Query 007128
Match_columns 617
No_of_seqs 673 out of 3502
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 19:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-136 5E-141 1091.1 28.3 500 92-604 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 1.4E-25 3E-30 241.1 4.2 197 390-606 35-262 (506)
3 PLN02336 phosphoethanolamine N 99.9 4.5E-24 9.8E-29 237.3 -6.2 308 216-562 39-370 (475)
4 PF01209 Ubie_methyltran: ubiE 99.6 7.2E-18 1.6E-22 170.4 -2.4 103 214-317 47-154 (233)
5 COG2226 UbiE Methylase involve 99.6 8.8E-18 1.9E-22 169.0 -2.9 102 214-316 51-156 (238)
6 PLN02233 ubiquinone biosynthes 99.4 2.1E-14 4.6E-19 147.8 1.7 102 215-317 74-183 (261)
7 KOG1540 Ubiquinone biosynthesi 99.4 2E-14 4.4E-19 142.7 0.2 129 186-317 65-215 (296)
8 PTZ00098 phosphoethanolamine N 99.4 3.5E-14 7.5E-19 146.4 0.3 114 195-318 41-158 (263)
9 PLN02244 tocopherol O-methyltr 99.4 4.9E-14 1.1E-18 150.5 0.7 102 214-317 118-224 (340)
10 PF08241 Methyltransf_11: Meth 99.4 6.5E-15 1.4E-19 125.8 -4.9 92 219-314 1-95 (95)
11 COG2227 UbiG 2-polyprenyl-3-me 99.4 3.1E-14 6.8E-19 141.4 -2.4 104 215-320 60-165 (243)
12 PF13489 Methyltransf_23: Meth 99.3 3.4E-14 7.3E-19 133.7 -3.7 137 192-346 7-160 (161)
13 PLN02396 hexaprenyldihydroxybe 99.3 1E-13 2.2E-18 146.4 -1.3 134 215-350 132-290 (322)
14 TIGR02752 MenG_heptapren 2-hep 99.3 4.4E-13 9.6E-18 134.9 2.3 101 215-316 46-151 (231)
15 PRK11036 putative S-adenosyl-L 99.3 1.6E-13 3.5E-18 140.7 -2.3 100 215-316 45-149 (255)
16 PRK11088 rrmA 23S rRNA methylt 99.3 9.1E-13 2E-17 136.4 3.3 152 151-320 18-185 (272)
17 PRK14103 trans-aconitate 2-met 99.3 4.5E-13 9.8E-18 137.3 -0.8 95 215-318 30-128 (255)
18 PRK01544 bifunctional N5-gluta 99.3 1.2E-12 2.7E-17 146.4 1.8 295 216-580 140-483 (506)
19 PLN02336 phosphoethanolamine N 99.2 1.6E-12 3.6E-17 144.8 1.5 102 215-318 267-371 (475)
20 PLN02490 MPBQ/MSBQ methyltrans 99.2 2.2E-12 4.7E-17 137.0 2.2 131 215-349 114-256 (340)
21 PRK10258 biotin biosynthesis p 99.2 2.2E-12 4.7E-17 131.7 1.3 99 215-319 43-143 (251)
22 PRK15068 tRNA mo(5)U34 methylt 99.2 3.1E-12 6.6E-17 135.6 0.7 129 216-346 124-271 (322)
23 PF08241 Methyltransf_11: Meth 99.2 2.8E-13 6E-18 115.7 -6.0 90 463-559 1-95 (95)
24 PF08242 Methyltransf_12: Meth 99.2 1.8E-12 3.9E-17 113.0 -1.8 93 219-312 1-99 (99)
25 PRK05785 hypothetical protein; 99.2 2.4E-12 5.2E-17 129.8 -1.6 87 215-310 52-141 (226)
26 TIGR00740 methyltransferase, p 99.2 5.9E-12 1.3E-16 127.8 0.8 102 215-318 54-163 (239)
27 PRK11873 arsM arsenite S-adeno 99.2 5.4E-12 1.2E-16 130.4 0.4 130 215-346 78-227 (272)
28 PRK15451 tRNA cmo(5)U34 methyl 99.1 7.8E-12 1.7E-16 127.7 0.7 101 215-317 57-165 (247)
29 PRK08317 hypothetical protein; 99.1 1.2E-11 2.7E-16 123.7 2.1 116 193-318 6-126 (241)
30 PF12847 Methyltransf_18: Meth 99.1 1.8E-12 4E-17 115.0 -3.6 101 215-316 2-111 (112)
31 TIGR00477 tehB tellurite resis 99.1 7.1E-12 1.5E-16 123.5 -0.3 98 216-315 32-132 (195)
32 TIGR00452 methyltransferase, p 99.1 8.8E-12 1.9E-16 131.3 0.1 129 216-346 123-270 (314)
33 PRK11207 tellurite resistance 99.1 7.8E-12 1.7E-16 123.4 -0.5 97 216-314 32-132 (197)
34 COG2226 UbiE Methylase involve 99.1 4.9E-12 1.1E-16 127.5 -2.1 99 460-564 53-159 (238)
35 PF13847 Methyltransf_31: Meth 99.1 3.7E-12 8E-17 120.1 -3.2 100 216-318 5-112 (152)
36 KOG4300 Predicted methyltransf 99.1 1.8E-11 3.9E-16 118.4 0.8 99 217-316 79-182 (252)
37 PRK01683 trans-aconitate 2-met 99.1 2.3E-11 5E-16 124.6 0.8 97 215-318 32-132 (258)
38 PF13649 Methyltransf_25: Meth 99.1 2.2E-12 4.8E-17 113.2 -6.0 92 218-310 1-101 (101)
39 TIGR02072 BioC biotin biosynth 99.1 3.1E-11 6.7E-16 121.1 1.5 99 216-319 36-138 (240)
40 COG4106 Tam Trans-aconitate me 99.0 7.3E-11 1.6E-15 115.0 2.8 119 214-344 30-152 (257)
41 COG2230 Cfa Cyclopropane fatty 99.0 5.1E-11 1.1E-15 122.4 1.1 126 179-316 45-176 (283)
42 smart00828 PKS_MT Methyltransf 99.0 2.3E-11 5E-16 121.8 -1.9 127 217-346 2-141 (224)
43 PRK00121 trmB tRNA (guanine-N( 99.0 4.1E-11 9E-16 118.8 -0.3 121 215-344 41-176 (202)
44 PLN02233 ubiquinone biosynthes 99.0 2.1E-11 4.7E-16 125.5 -3.2 97 460-562 75-183 (261)
45 TIGR02021 BchM-ChlM magnesium 99.0 7.5E-11 1.6E-15 118.0 0.6 130 215-348 56-205 (219)
46 PF02353 CMAS: Mycolic acid cy 99.0 3.5E-11 7.5E-16 124.6 -2.0 124 180-315 36-165 (273)
47 COG4976 Predicted methyltransf 99.0 4.3E-11 9.3E-16 117.4 -1.6 161 185-351 89-267 (287)
48 PLN02396 hexaprenyldihydroxybe 99.0 4.3E-11 9.4E-16 126.5 -1.9 95 461-562 134-236 (322)
49 PRK00107 gidB 16S rRNA methylt 99.0 6.9E-11 1.5E-15 115.8 -0.6 115 215-345 46-165 (187)
50 KOG1270 Methyltransferases [Co 99.0 4.7E-11 1E-15 119.7 -1.9 100 215-319 90-198 (282)
51 PF13489 Methyltransf_23: Meth 99.0 8.5E-12 1.8E-16 117.3 -7.1 96 458-564 22-118 (161)
52 PRK12335 tellurite resistance 99.0 5E-11 1.1E-15 124.5 -2.1 98 216-315 122-222 (287)
53 PF01209 Ubie_methyltran: ubiE 99.0 1.2E-11 2.6E-16 125.2 -6.7 116 437-564 33-156 (233)
54 PRK10258 biotin biosynthesis p 99.0 1.3E-10 2.7E-15 118.8 0.5 99 458-563 42-142 (251)
55 smart00138 MeTrc Methyltransfe 98.9 6.8E-11 1.5E-15 122.0 -2.0 103 214-316 99-242 (264)
56 PRK06922 hypothetical protein; 98.9 6.6E-11 1.4E-15 133.2 -2.6 101 216-317 420-538 (677)
57 COG4976 Predicted methyltransf 98.9 3.8E-10 8.2E-15 110.9 2.4 169 429-605 88-286 (287)
58 TIGR02752 MenG_heptapren 2-hep 98.9 1.6E-10 3.4E-15 116.4 -0.3 134 460-604 47-231 (231)
59 PF03848 TehB: Tellurite resis 98.9 1.5E-10 3.3E-15 113.2 -0.5 97 216-315 32-132 (192)
60 PRK06202 hypothetical protein; 98.9 3.7E-10 8E-15 114.1 2.0 96 215-315 61-165 (232)
61 PRK00107 gidB 16S rRNA methylt 98.9 6.1E-10 1.3E-14 109.1 3.1 152 437-605 27-187 (187)
62 PRK14103 trans-aconitate 2-met 98.9 1.4E-10 3E-15 119.0 -1.7 95 458-561 29-126 (255)
63 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 4.9E-10 1.1E-14 111.3 2.1 99 215-316 40-143 (223)
64 PRK11207 tellurite resistance 98.9 8.5E-11 1.8E-15 116.1 -3.6 114 460-581 32-166 (197)
65 PRK11036 putative S-adenosyl-L 98.9 2.5E-10 5.3E-15 117.1 -0.5 95 460-561 46-149 (255)
66 PLN02244 tocopherol O-methyltr 98.9 1.3E-10 2.8E-15 124.3 -3.0 95 459-561 119-223 (340)
67 PTZ00098 phosphoethanolamine N 98.9 1.6E-10 3.5E-15 119.2 -2.4 98 460-562 54-157 (263)
68 TIGR00138 gidB 16S rRNA methyl 98.9 4E-10 8.7E-15 109.9 0.4 95 215-316 43-142 (181)
69 KOG3010 Methyltransferase [Gen 98.9 1.8E-10 3.9E-15 114.2 -2.2 139 185-343 10-158 (261)
70 TIGR00452 methyltransferase, p 98.9 1.8E-10 3.9E-15 121.4 -2.8 141 460-615 123-295 (314)
71 TIGR00091 tRNA (guanine-N(7)-) 98.9 3.3E-10 7.2E-15 111.5 -0.7 101 216-318 18-134 (194)
72 PRK00216 ubiE ubiquinone/menaq 98.8 8.2E-10 1.8E-14 110.9 1.8 101 215-316 52-158 (239)
73 PLN02585 magnesium protoporphy 98.8 4E-10 8.6E-15 118.9 -0.7 96 215-314 145-248 (315)
74 TIGR03840 TMPT_Se_Te thiopurin 98.8 4E-10 8.7E-15 112.7 -0.7 101 216-316 36-152 (213)
75 PRK09489 rsmC 16S ribosomal RN 98.8 1.9E-10 4E-15 122.9 -3.3 102 216-320 198-307 (342)
76 PF07021 MetW: Methionine bios 98.8 3.5E-10 7.6E-15 109.7 -1.3 94 216-319 15-112 (193)
77 TIGR02716 C20_methyl_CrtF C-20 98.8 8.6E-10 1.9E-14 116.1 1.4 99 215-317 150-255 (306)
78 PRK15068 tRNA mo(5)U34 methylt 98.8 6.4E-10 1.4E-14 118.0 0.3 140 460-614 124-295 (322)
79 TIGR00406 prmA ribosomal prote 98.8 1.3E-09 2.7E-14 114.0 2.2 140 184-345 135-279 (288)
80 PF05401 NodS: Nodulation prot 98.8 4.2E-10 9.2E-15 109.3 -1.3 102 212-316 41-146 (201)
81 KOG1541 Predicted protein carb 98.8 4.3E-09 9.4E-14 103.0 5.6 130 196-343 38-181 (270)
82 PF08242 Methyltransf_12: Meth 98.8 1.8E-10 3.8E-15 100.4 -4.0 90 463-557 1-99 (99)
83 PRK13944 protein-L-isoaspartat 98.8 2.4E-09 5.3E-14 106.3 3.3 92 216-315 74-172 (205)
84 TIGR02469 CbiT precorrin-6Y C5 98.8 1.3E-09 2.8E-14 97.9 1.1 97 216-316 21-122 (124)
85 PRK11705 cyclopropane fatty ac 98.8 6.7E-10 1.4E-14 120.5 -1.2 96 215-316 168-267 (383)
86 COG2264 PrmA Ribosomal protein 98.8 1E-09 2.2E-14 113.8 0.2 144 185-347 139-286 (300)
87 TIGR00537 hemK_rel_arch HemK-r 98.8 8.9E-10 1.9E-14 106.9 -0.4 119 216-345 21-161 (179)
88 PF08003 Methyltransf_9: Prote 98.8 1.7E-09 3.6E-14 111.5 1.5 128 215-346 116-264 (315)
89 PRK04266 fibrillarin; Provisio 98.8 1.7E-09 3.6E-14 109.1 1.2 126 215-347 73-208 (226)
90 TIGR03587 Pse_Me-ase pseudamin 98.8 1.4E-09 3.1E-14 108.0 0.6 93 216-316 45-142 (204)
91 smart00828 PKS_MT Methyltransf 98.8 8E-10 1.7E-14 110.7 -1.9 114 461-581 2-140 (224)
92 PRK13942 protein-L-isoaspartat 98.8 4.2E-09 9.1E-14 105.2 3.2 108 192-315 62-175 (212)
93 PLN02232 ubiquinone biosynthes 98.7 1E-09 2.3E-14 104.7 -1.1 78 238-316 1-81 (160)
94 PRK05134 bifunctional 3-demeth 98.7 2E-09 4.4E-14 108.5 0.6 101 215-317 49-152 (233)
95 TIGR01983 UbiG ubiquinone bios 98.7 1.3E-09 2.8E-14 109.0 -0.8 101 215-317 46-150 (224)
96 PRK05785 hypothetical protein; 98.7 1.3E-09 2.9E-14 109.9 -0.8 94 460-562 53-149 (226)
97 PRK01683 trans-aconitate 2-met 98.7 1.7E-09 3.6E-14 110.9 -0.3 116 457-580 30-153 (258)
98 KOG4300 Predicted methyltransf 98.7 1.1E-09 2.5E-14 106.0 -1.4 133 437-575 51-201 (252)
99 KOG1271 Methyltransferases [Ge 98.7 4E-09 8.6E-14 100.4 2.2 120 216-345 69-201 (227)
100 TIGR01177 conserved hypothetic 98.7 2.8E-09 6E-14 113.6 0.7 120 215-347 183-313 (329)
101 PRK08287 cobalt-precorrin-6Y C 98.7 5.2E-09 1.1E-13 102.2 2.6 118 215-347 32-154 (187)
102 COG2227 UbiG 2-polyprenyl-3-me 98.7 1.6E-09 3.5E-14 108.1 -1.5 97 461-564 62-164 (243)
103 PRK15001 SAM-dependent 23S rib 98.7 1.9E-09 4E-14 116.3 -1.2 99 216-316 230-340 (378)
104 PRK00517 prmA ribosomal protei 98.7 4.7E-09 1E-13 107.5 1.6 113 215-346 120-235 (250)
105 PRK11188 rrmJ 23S rRNA methylt 98.7 1.5E-09 3.3E-14 108.2 -2.1 90 216-317 53-166 (209)
106 TIGR00080 pimt protein-L-isoas 98.7 1E-08 2.3E-13 102.5 3.5 106 194-315 65-176 (215)
107 PF02353 CMAS: Mycolic acid cy 98.7 1.1E-09 2.3E-14 113.6 -4.1 99 460-562 64-167 (273)
108 PRK13255 thiopurine S-methyltr 98.7 3.4E-09 7.4E-14 106.4 -0.4 99 216-314 39-153 (218)
109 PRK07580 Mg-protoporphyrin IX 98.7 2.3E-09 5E-14 107.5 -1.7 96 215-314 64-164 (230)
110 PF12847 Methyltransf_18: Meth 98.7 2.5E-10 5.4E-15 101.3 -7.9 97 461-561 4-111 (112)
111 PF06325 PrmA: Ribosomal prote 98.7 2.2E-09 4.7E-14 112.1 -2.1 144 182-347 135-281 (295)
112 KOG2940 Predicted methyltransf 98.7 1.9E-09 4.2E-14 105.8 -2.5 133 215-350 73-228 (325)
113 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.4E-09 3.1E-14 111.1 -3.6 99 460-563 58-166 (247)
114 PRK12335 tellurite resistance 98.6 2.5E-09 5.5E-14 111.7 -2.0 112 461-581 123-255 (287)
115 PF05175 MTS: Methyltransferas 98.6 4.1E-10 8.8E-15 108.6 -7.6 98 216-316 33-140 (170)
116 PRK08317 hypothetical protein; 98.6 1.7E-09 3.8E-14 108.2 -3.4 102 457-562 18-125 (241)
117 PRK14121 tRNA (guanine-N(7)-)- 98.6 5.4E-09 1.2E-13 112.5 -0.3 99 216-316 124-235 (390)
118 TIGR00477 tehB tellurite resis 98.6 1.2E-09 2.6E-14 107.6 -4.9 113 460-581 32-165 (195)
119 COG2813 RsmC 16S RNA G1207 met 98.6 1.7E-09 3.8E-14 111.5 -4.0 134 176-319 127-269 (300)
120 PF05219 DREV: DREV methyltran 98.6 1.2E-09 2.7E-14 110.2 -5.0 126 176-315 60-187 (265)
121 TIGR03534 RF_mod_PrmC protein- 98.6 1.8E-08 4E-13 102.3 3.4 120 216-346 89-238 (251)
122 TIGR00740 methyltransferase, p 98.6 1.6E-09 3.5E-14 110.0 -4.7 99 460-563 55-163 (239)
123 PRK14967 putative methyltransf 98.6 1.4E-08 3.1E-13 102.1 2.1 118 216-343 38-178 (223)
124 PLN03075 nicotianamine synthas 98.6 4.8E-09 1E-13 109.1 -1.4 102 214-316 123-233 (296)
125 KOG1540 Ubiquinone biosynthesi 98.6 3.8E-09 8.3E-14 105.5 -2.3 122 454-580 96-234 (296)
126 smart00138 MeTrc Methyltransfe 98.6 4.8E-09 1E-13 108.3 -2.3 133 428-565 69-246 (264)
127 PF07021 MetW: Methionine bios 98.6 5.9E-09 1.3E-13 101.2 -1.8 102 451-563 8-111 (193)
128 TIGR02081 metW methionine bios 98.6 3.9E-09 8.4E-14 103.8 -3.3 85 216-308 15-104 (194)
129 PRK14968 putative methyltransf 98.6 1.1E-08 2.4E-13 99.0 -0.1 120 216-345 25-169 (188)
130 PLN02490 MPBQ/MSBQ methyltrans 98.6 5.7E-09 1.2E-13 111.0 -2.3 120 460-586 115-256 (340)
131 PTZ00146 fibrillarin; Provisio 98.6 1.6E-08 3.5E-13 104.8 0.7 124 215-346 133-268 (293)
132 PF13847 Methyltransf_31: Meth 98.5 1.8E-09 4E-14 101.7 -6.4 96 460-563 5-112 (152)
133 PRK11705 cyclopropane fatty ac 98.5 6E-09 1.3E-13 113.1 -3.8 97 460-561 169-267 (383)
134 PRK00377 cbiT cobalt-precorrin 98.5 1.9E-08 4.2E-13 99.3 -0.4 115 215-342 41-163 (198)
135 PF05148 Methyltransf_8: Hypot 98.5 1.6E-08 3.5E-13 99.1 -1.1 109 216-347 74-183 (219)
136 PRK00312 pcm protein-L-isoaspa 98.5 6.6E-08 1.4E-12 96.3 3.2 94 215-316 79-175 (212)
137 KOG2361 Predicted methyltransf 98.5 2.7E-08 5.9E-13 98.9 0.3 149 194-348 57-236 (264)
138 TIGR02072 BioC biotin biosynth 98.5 2.1E-08 4.5E-13 100.5 -0.9 98 460-562 36-136 (240)
139 KOG1270 Methyltransferases [Co 98.5 1.2E-08 2.7E-13 102.5 -2.6 98 460-564 91-198 (282)
140 PF13659 Methyltransf_26: Meth 98.5 5.3E-09 1.2E-13 93.5 -4.8 101 216-317 2-116 (117)
141 PRK04266 fibrillarin; Provisio 98.5 3.9E-08 8.5E-13 99.2 0.8 134 461-605 75-226 (226)
142 PRK11188 rrmJ 23S rRNA methylt 98.5 8E-08 1.7E-12 95.9 2.7 137 461-604 54-206 (209)
143 KOG3045 Predicted RNA methylas 98.4 5.9E-08 1.3E-12 97.1 1.5 110 215-348 181-290 (325)
144 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 3.3E-08 7.2E-13 98.2 -0.5 100 459-562 40-144 (223)
145 PRK11088 rrmA 23S rRNA methylt 98.4 3.7E-08 8E-13 102.1 -0.7 101 460-572 87-193 (272)
146 PF05401 NodS: Nodulation prot 98.4 1.5E-08 3.2E-13 98.7 -3.6 107 454-564 39-149 (201)
147 PRK00517 prmA ribosomal protei 98.4 3.2E-08 6.9E-13 101.4 -1.4 127 460-604 121-249 (250)
148 PRK15001 SAM-dependent 23S rib 98.4 6.5E-08 1.4E-12 104.4 0.6 128 460-604 230-373 (378)
149 PRK06202 hypothetical protein; 98.4 2.8E-08 6.1E-13 100.4 -2.2 100 457-561 59-166 (232)
150 PRK14966 unknown domain/N5-glu 98.4 6.8E-08 1.5E-12 104.7 0.6 120 216-345 253-401 (423)
151 TIGR00138 gidB 16S rRNA methyl 98.4 4.6E-08 1E-12 95.4 -0.7 129 437-579 25-160 (181)
152 cd02440 AdoMet_MTases S-adenos 98.4 2.5E-08 5.3E-13 84.7 -2.3 99 217-315 1-103 (107)
153 PF06080 DUF938: Protein of un 98.4 1.3E-07 2.9E-12 93.0 2.5 130 217-348 28-191 (204)
154 TIGR03438 probable methyltrans 98.4 4.7E-08 1E-12 102.9 -0.9 100 216-316 65-177 (301)
155 COG4106 Tam Trans-aconitate me 98.4 8E-08 1.7E-12 94.1 0.7 121 448-580 21-152 (257)
156 PF13649 Methyltransf_25: Meth 98.4 3.2E-09 6.9E-14 93.0 -8.4 92 462-555 1-101 (101)
157 TIGR03533 L3_gln_methyl protei 98.4 7.3E-08 1.6E-12 100.6 0.0 116 216-343 123-268 (284)
158 PF03848 TehB: Tellurite resis 98.4 1.1E-08 2.4E-13 100.1 -5.7 115 461-581 33-165 (192)
159 PRK11873 arsM arsenite S-adeno 98.4 1.5E-08 3.2E-13 104.9 -5.2 96 461-562 80-184 (272)
160 PRK00811 spermidine synthase; 98.3 2.4E-07 5.1E-12 96.8 3.2 101 215-316 77-191 (283)
161 PRK00121 trmB tRNA (guanine-N( 98.3 4.4E-08 9.6E-13 97.1 -2.1 121 459-580 41-176 (202)
162 TIGR00537 hemK_rel_arch HemK-r 98.3 4E-08 8.7E-13 95.3 -2.4 115 460-580 21-160 (179)
163 PRK14968 putative methyltransf 98.3 6.2E-08 1.3E-12 93.8 -1.3 136 460-604 25-188 (188)
164 PF08003 Methyltransf_9: Prote 98.3 7.7E-08 1.7E-12 99.4 -0.7 144 458-615 115-289 (315)
165 PRK10901 16S rRNA methyltransf 98.3 2E-07 4.3E-12 102.8 2.2 105 215-320 245-376 (427)
166 PRK13943 protein-L-isoaspartat 98.3 2.4E-07 5.2E-12 98.1 2.8 92 216-315 82-179 (322)
167 PRK07402 precorrin-6B methylas 98.3 1E-07 2.2E-12 93.9 -0.1 97 215-317 41-143 (196)
168 TIGR00406 prmA ribosomal prote 98.3 4.4E-08 9.4E-13 102.5 -2.9 112 460-581 161-279 (288)
169 PRK08287 cobalt-precorrin-6Y C 98.3 5.7E-08 1.2E-12 94.9 -1.9 114 459-581 32-152 (187)
170 TIGR00438 rrmJ cell division p 98.3 9.5E-08 2.1E-12 93.5 -0.6 91 215-316 33-146 (188)
171 TIGR00438 rrmJ cell division p 98.3 2.1E-07 4.5E-12 91.0 1.5 137 460-603 34-186 (188)
172 COG2230 Cfa Cyclopropane fatty 98.3 5.9E-08 1.3E-12 100.0 -2.6 97 460-560 74-175 (283)
173 PRK09328 N5-glutamine S-adenos 98.3 7E-07 1.5E-11 92.2 5.3 120 215-344 109-257 (275)
174 TIGR00563 rsmB ribosomal RNA s 98.3 2.3E-07 4.9E-12 102.4 1.8 106 215-321 239-373 (426)
175 TIGR02021 BchM-ChlM magnesium 98.3 7.1E-08 1.5E-12 96.5 -2.0 118 459-581 56-202 (219)
176 COG4123 Predicted O-methyltran 98.3 8.1E-08 1.7E-12 97.3 -1.7 121 215-344 45-189 (248)
177 PRK13256 thiopurine S-methyltr 98.3 1.2E-07 2.6E-12 95.4 -0.5 102 216-317 45-164 (226)
178 PRK06922 hypothetical protein; 98.3 5.5E-08 1.2E-12 110.0 -4.0 100 460-562 420-538 (677)
179 PRK00216 ubiE ubiquinone/menaq 98.3 3.6E-07 7.8E-12 91.7 2.3 98 460-561 53-158 (239)
180 PF01135 PCMT: Protein-L-isoas 98.3 2.6E-07 5.7E-12 92.1 1.1 109 192-315 58-171 (209)
181 PRK14901 16S rRNA methyltransf 98.2 3.5E-07 7.6E-12 101.1 1.9 120 215-340 253-403 (434)
182 PRK05134 bifunctional 3-demeth 98.2 1E-07 2.2E-12 96.2 -2.3 95 460-562 50-152 (233)
183 TIGR00536 hemK_fam HemK family 98.2 1.9E-07 4.2E-12 97.4 -0.5 99 216-316 116-244 (284)
184 PRK14904 16S rRNA methyltransf 98.2 1.6E-07 3.5E-12 104.1 -1.3 118 215-339 251-395 (445)
185 PTZ00146 fibrillarin; Provisio 98.2 3.2E-07 6.9E-12 95.3 0.7 134 461-605 135-287 (293)
186 KOG1975 mRNA cap methyltransfe 98.2 2.1E-07 4.4E-12 96.0 -0.9 105 215-320 118-241 (389)
187 PRK11805 N5-glutamine S-adenos 98.2 2.3E-07 4.9E-12 98.0 -1.2 99 216-316 135-263 (307)
188 TIGR03704 PrmC_rel_meth putati 98.2 9.2E-07 2E-11 90.7 3.2 117 216-344 88-235 (251)
189 TIGR01983 UbiG ubiquinone bios 98.2 3.8E-07 8.2E-12 91.2 0.2 97 459-562 46-150 (224)
190 TIGR03587 Pse_Me-ase pseudamin 98.2 1.2E-07 2.5E-12 94.4 -3.6 94 459-562 44-143 (204)
191 PF03291 Pox_MCEL: mRNA cappin 98.2 1.2E-07 2.6E-12 100.8 -3.7 106 214-319 62-189 (331)
192 PRK00377 cbiT cobalt-precorrin 98.1 1.8E-07 4E-12 92.3 -2.8 114 460-580 42-165 (198)
193 smart00650 rADc Ribosomal RNA 98.1 6E-07 1.3E-11 86.3 0.7 95 216-315 15-112 (169)
194 TIGR02081 metW methionine bios 98.1 1.5E-07 3.2E-12 92.5 -3.8 87 461-554 16-105 (194)
195 COG2518 Pcm Protein-L-isoaspar 98.1 1.5E-06 3.2E-11 85.9 3.1 106 194-315 60-168 (209)
196 PRK14903 16S rRNA methyltransf 98.1 6.2E-07 1.4E-11 99.0 0.4 105 215-320 238-370 (431)
197 TIGR00446 nop2p NOL1/NOP2/sun 98.1 2.3E-07 4.9E-12 95.9 -2.9 106 215-321 72-204 (264)
198 PF06325 PrmA: Ribosomal prote 98.1 1.9E-07 4E-12 97.7 -3.6 126 460-605 163-295 (295)
199 COG2264 PrmA Ribosomal protein 98.1 7E-07 1.5E-11 92.9 0.2 115 458-581 162-284 (300)
200 PLN02366 spermidine synthase 98.1 2E-06 4.4E-11 90.6 3.4 102 215-317 92-207 (308)
201 PRK14902 16S rRNA methyltransf 98.1 6.8E-07 1.5E-11 99.1 -0.5 102 216-319 252-382 (444)
202 TIGR02716 C20_methyl_CrtF C-20 98.1 2.2E-07 4.7E-12 97.9 -4.3 103 454-562 145-255 (306)
203 TIGR00417 speE spermidine synt 98.1 1.7E-06 3.6E-11 89.8 2.3 102 215-317 73-187 (270)
204 PHA03411 putative methyltransf 98.1 1.1E-06 2.3E-11 90.5 0.7 119 216-344 66-209 (279)
205 KOG3010 Methyltransferase [Gen 98.0 7E-07 1.5E-11 89.0 -0.7 115 457-579 32-158 (261)
206 TIGR00091 tRNA (guanine-N(7)-) 98.0 2.6E-07 5.7E-12 91.0 -3.8 121 460-581 18-154 (194)
207 PRK04457 spermidine synthase; 98.0 6.8E-07 1.5E-11 92.3 -1.4 116 193-315 52-176 (262)
208 PRK01581 speE spermidine synth 98.0 1.1E-06 2.3E-11 93.8 -0.2 140 193-343 135-291 (374)
209 PRK07580 Mg-protoporphyrin IX 98.0 3.8E-07 8.2E-12 91.5 -3.4 99 459-562 64-167 (230)
210 PRK03612 spermidine synthase; 98.0 2.4E-06 5.3E-11 96.5 1.9 123 215-342 298-437 (521)
211 COG4123 Predicted O-methyltran 98.0 1.8E-06 3.8E-11 87.7 0.7 128 449-581 35-190 (248)
212 PRK09328 N5-glutamine S-adenos 98.0 1.7E-06 3.8E-11 89.2 0.3 136 460-604 110-275 (275)
213 KOG3987 Uncharacterized conser 98.0 1.9E-06 4.2E-11 83.8 0.5 126 174-315 78-206 (288)
214 TIGR02469 CbiT precorrin-6Y C5 98.0 4.8E-07 1.1E-11 81.1 -3.5 92 460-560 21-121 (124)
215 TIGR03840 TMPT_Se_Te thiopurin 98.0 4.6E-07 9.9E-12 90.7 -4.1 93 460-557 36-148 (213)
216 PRK10611 chemotaxis methyltran 97.9 1.4E-06 3E-11 90.8 -0.9 125 184-316 93-262 (287)
217 PF05891 Methyltransf_PK: AdoM 97.9 1.9E-07 4.1E-12 92.5 -7.1 135 214-348 55-200 (218)
218 PRK13255 thiopurine S-methyltr 97.9 7.4E-07 1.6E-11 89.5 -3.6 93 461-558 40-152 (218)
219 TIGR03534 RF_mod_PrmC protein- 97.9 1.1E-06 2.3E-11 89.3 -2.5 118 460-581 89-237 (251)
220 PF05148 Methyltransf_8: Hypot 97.9 2.5E-05 5.3E-10 77.0 6.9 104 461-581 75-181 (219)
221 PF02390 Methyltransf_4: Putat 97.9 8.9E-07 1.9E-11 87.4 -3.5 99 217-316 20-133 (195)
222 PRK14966 unknown domain/N5-glu 97.8 2.6E-06 5.6E-11 92.6 -0.9 135 461-604 254-418 (423)
223 TIGR00536 hemK_fam HemK family 97.8 3.4E-06 7.4E-11 88.1 -0.2 134 460-604 116-282 (284)
224 COG2519 GCD14 tRNA(1-methylade 97.8 7.9E-06 1.7E-10 82.5 2.1 118 214-347 94-218 (256)
225 COG0220 Predicted S-adenosylme 97.8 2.4E-06 5.2E-11 86.1 -1.9 99 216-316 50-164 (227)
226 PRK11783 rlmL 23S rRNA m(2)G24 97.8 2.1E-06 4.5E-11 100.4 -3.0 100 216-316 540-656 (702)
227 PRK14967 putative methyltransf 97.8 2.3E-06 5E-11 86.0 -2.7 117 460-580 38-179 (223)
228 PLN02781 Probable caffeoyl-CoA 97.8 5.1E-06 1.1E-10 84.4 -0.2 95 216-315 70-177 (234)
229 PF00891 Methyltransf_2: O-met 97.8 2E-06 4.3E-11 87.4 -3.5 95 215-319 101-202 (241)
230 PRK11727 23S rRNA mA1618 methy 97.8 2.5E-05 5.4E-10 82.8 4.6 97 191-287 91-198 (321)
231 PRK13168 rumA 23S rRNA m(5)U19 97.7 8.9E-06 1.9E-10 90.2 1.3 97 216-318 299-402 (443)
232 TIGR03438 probable methyltrans 97.7 2.5E-06 5.3E-11 89.9 -3.0 99 460-561 65-177 (301)
233 COG2890 HemK Methylase of poly 97.7 5.3E-06 1.1E-10 86.5 -0.8 114 217-342 113-255 (280)
234 PF01728 FtsJ: FtsJ-like methy 97.7 3.6E-05 7.8E-10 74.7 4.9 143 454-604 19-180 (181)
235 PRK13944 protein-L-isoaspartat 97.7 1.9E-06 4.1E-11 85.6 -4.2 88 460-561 74-173 (205)
236 TIGR03533 L3_gln_methyl protei 97.7 5.1E-06 1.1E-10 86.8 -1.3 117 460-580 123-269 (284)
237 PRK09489 rsmC 16S ribosomal RN 97.7 1.8E-06 4E-11 92.4 -5.0 131 461-605 199-337 (342)
238 PRK15128 23S rRNA m(5)C1962 me 97.7 4.8E-06 1E-10 90.9 -1.8 100 216-316 222-339 (396)
239 COG2242 CobL Precorrin-6B meth 97.7 1.2E-05 2.7E-10 77.8 1.0 114 215-342 35-153 (187)
240 PRK14121 tRNA (guanine-N(7)-)- 97.7 6E-06 1.3E-10 89.2 -1.4 115 461-576 125-251 (390)
241 PRK07402 precorrin-6B methylas 97.7 1.3E-05 2.8E-10 78.9 1.0 106 460-576 42-158 (196)
242 PF01739 CheR: CheR methyltran 97.7 8.9E-06 1.9E-10 80.3 -0.3 131 185-316 3-175 (196)
243 KOG1541 Predicted protein carb 97.7 9E-06 2E-10 80.1 -0.4 120 457-580 49-179 (270)
244 PLN02585 magnesium protoporphy 97.7 2.9E-06 6.3E-11 89.8 -4.2 94 460-559 146-248 (315)
245 KOG3045 Predicted RNA methylas 97.6 4.2E-05 9.1E-10 77.1 4.2 117 462-605 184-303 (325)
246 TIGR00479 rumA 23S rRNA (uraci 97.6 1.9E-05 4.1E-10 87.3 1.7 97 216-317 294-397 (431)
247 TIGR03704 PrmC_rel_meth putati 97.6 6.7E-06 1.5E-10 84.4 -1.8 121 461-586 89-239 (251)
248 PHA03412 putative methyltransf 97.6 9.8E-06 2.1E-10 81.8 -0.7 90 216-311 51-158 (241)
249 PRK03522 rumB 23S rRNA methylu 97.6 1.4E-05 3E-10 84.8 0.3 98 216-318 175-276 (315)
250 TIGR00478 tly hemolysin TlyA f 97.6 1.4E-05 3.1E-10 80.7 0.1 89 215-315 76-170 (228)
251 COG2890 HemK Methylase of poly 97.6 2.4E-05 5.2E-10 81.6 1.8 134 461-604 113-276 (280)
252 PRK04457 spermidine synthase; 97.6 1.3E-05 2.8E-10 82.9 -0.4 101 457-559 65-175 (262)
253 PF05724 TPMT: Thiopurine S-me 97.6 7.1E-06 1.5E-10 82.4 -2.2 100 215-314 38-153 (218)
254 TIGR00080 pimt protein-L-isoas 97.6 3E-06 6.6E-11 84.7 -4.9 90 460-560 79-176 (215)
255 PRK11805 N5-glutamine S-adenos 97.6 1.3E-05 2.8E-10 84.7 -0.4 114 460-577 135-278 (307)
256 PRK10909 rsmD 16S rRNA m(2)G96 97.6 2.1E-05 4.5E-10 78.0 0.9 131 175-317 22-160 (199)
257 COG2521 Predicted archaeal met 97.6 8.5E-06 1.8E-10 80.9 -1.8 149 192-348 118-276 (287)
258 PLN02232 ubiquinone biosynthes 97.6 6.2E-06 1.3E-10 78.8 -2.8 49 511-563 35-83 (160)
259 TIGR01177 conserved hypothetic 97.6 5.8E-06 1.3E-10 88.2 -3.5 114 461-581 185-311 (329)
260 cd02440 AdoMet_MTases S-adenos 97.6 5.6E-06 1.2E-10 70.0 -3.1 94 461-560 1-103 (107)
261 PF12147 Methyltransf_20: Puta 97.5 1.6E-05 3.4E-10 81.8 -0.4 135 211-347 132-296 (311)
262 PLN02672 methionine S-methyltr 97.5 2.2E-05 4.7E-10 94.4 0.5 119 216-344 120-298 (1082)
263 KOG2899 Predicted methyltransf 97.5 9.6E-06 2.1E-10 80.9 -2.2 101 215-315 59-208 (288)
264 PF05219 DREV: DREV methyltran 97.5 9.2E-06 2E-10 82.5 -2.4 92 458-560 94-187 (265)
265 PRK14896 ksgA 16S ribosomal RN 97.5 4.7E-05 1E-09 78.4 2.0 83 193-287 16-100 (258)
266 PRK00274 ksgA 16S ribosomal RN 97.5 4.1E-05 8.9E-10 79.5 1.5 81 194-285 30-112 (272)
267 PF05175 MTS: Methyltransferas 97.5 5.8E-06 1.2E-10 79.7 -4.6 111 460-573 33-154 (170)
268 KOG1331 Predicted methyltransf 97.5 2.8E-05 6E-10 79.7 0.0 97 215-317 46-144 (293)
269 PF08704 GCD14: tRNA methyltra 97.5 2.8E-05 6.1E-10 79.4 0.0 127 197-346 31-168 (247)
270 PF07942 N2227: N2227-like pro 97.5 1.6E-05 3.5E-10 82.0 -1.8 132 214-348 56-241 (270)
271 PF00891 Methyltransf_2: O-met 97.5 6E-06 1.3E-10 83.9 -5.0 102 453-563 95-201 (241)
272 PRK13942 protein-L-isoaspartat 97.4 9.8E-06 2.1E-10 81.0 -3.4 91 460-561 78-176 (212)
273 COG0500 SmtA SAM-dependent met 97.4 2.1E-05 4.5E-10 69.9 -1.4 100 218-320 52-159 (257)
274 PRK11783 rlmL 23S rRNA m(2)G24 97.4 2.1E-05 4.5E-10 92.1 -1.8 116 460-586 540-679 (702)
275 PF05891 Methyltransf_PK: AdoM 97.4 1.9E-05 4.1E-10 78.4 -1.8 123 458-584 55-200 (218)
276 COG2813 RsmC 16S RNA G1207 met 97.4 2.1E-05 4.7E-10 81.6 -1.7 128 461-605 161-300 (300)
277 KOG2361 Predicted methyltransf 97.4 2.6E-05 5.6E-10 78.0 -1.4 119 461-581 74-233 (264)
278 COG1041 Predicted DNA modifica 97.4 4.4E-05 9.5E-10 80.7 -0.0 103 215-317 198-311 (347)
279 PRK00811 spermidine synthase; 97.3 2.4E-05 5.3E-10 81.7 -2.4 100 457-561 75-191 (283)
280 TIGR02085 meth_trns_rumB 23S r 97.3 5E-05 1.1E-09 82.5 -0.2 97 216-317 235-335 (374)
281 PF11968 DUF3321: Putative met 97.3 7.2E-05 1.6E-09 74.1 0.8 116 216-348 53-180 (219)
282 KOG1499 Protein arginine N-met 97.3 3.7E-05 7.9E-10 80.9 -1.4 98 215-315 61-166 (346)
283 TIGR00417 speE spermidine synt 97.3 4.8E-05 1E-09 78.9 -0.6 105 457-562 71-187 (270)
284 PLN02476 O-methyltransferase 97.3 4.9E-05 1.1E-09 78.9 -0.6 95 216-315 120-227 (278)
285 COG4122 Predicted O-methyltran 97.3 4.2E-05 9.1E-10 76.5 -1.3 95 216-315 61-165 (219)
286 PF01596 Methyltransf_3: O-met 97.3 3E-05 6.5E-10 77.2 -2.4 96 216-316 47-155 (205)
287 TIGR00478 tly hemolysin TlyA f 97.2 0.00011 2.4E-09 74.3 1.5 35 460-496 77-112 (228)
288 PF13659 Methyltransf_26: Meth 97.2 6E-06 1.3E-10 73.7 -7.0 97 461-561 3-115 (117)
289 COG2263 Predicted RNA methylas 97.2 0.00018 4E-09 69.7 2.7 67 215-285 46-115 (198)
290 PRK00312 pcm protein-L-isoaspa 97.2 2.5E-05 5.3E-10 77.8 -3.4 88 460-562 80-176 (212)
291 PRK01544 bifunctional N5-gluta 97.2 4.7E-05 1E-09 85.8 -1.6 101 214-316 347-462 (506)
292 PLN03075 nicotianamine synthas 97.2 3.4E-05 7.3E-10 80.6 -3.0 137 458-606 123-276 (296)
293 PTZ00338 dimethyladenosine tra 97.2 0.00017 3.6E-09 75.8 2.1 83 193-285 23-108 (294)
294 PF10294 Methyltransf_16: Puta 97.2 3.2E-05 6.9E-10 74.9 -3.3 102 215-319 46-159 (173)
295 KOG1269 SAM-dependent methyltr 97.1 7.6E-05 1.6E-09 80.3 -1.5 98 216-315 112-214 (364)
296 TIGR00755 ksgA dimethyladenosi 97.1 0.00024 5.1E-09 73.0 1.9 67 215-285 30-101 (253)
297 KOG2904 Predicted methyltransf 97.1 0.00016 3.5E-09 73.5 0.7 120 192-317 131-286 (328)
298 PLN02366 spermidine synthase 97.1 5.3E-05 1.2E-09 80.0 -3.0 101 457-561 90-206 (308)
299 PRK01581 speE spermidine synth 97.0 0.00024 5.1E-09 76.1 1.3 145 456-607 148-316 (374)
300 COG2521 Predicted archaeal met 97.0 0.001 2.2E-08 66.5 5.3 116 459-581 135-273 (287)
301 PLN02823 spermine synthase 96.9 0.00019 4.1E-09 76.7 -0.4 100 215-315 104-219 (336)
302 PF05185 PRMT5: PRMT5 arginine 96.9 0.00011 2.3E-09 81.5 -2.5 98 215-315 187-296 (448)
303 PRK10901 16S rRNA methyltransf 96.9 0.00013 2.7E-09 80.7 -2.2 115 460-575 246-390 (427)
304 PHA03411 putative methyltransf 96.9 6.4E-05 1.4E-09 77.5 -4.4 118 460-580 66-209 (279)
305 PRK14904 16S rRNA methyltransf 96.8 0.00011 2.4E-09 81.6 -3.5 112 460-575 252-395 (445)
306 PRK14902 16S rRNA methyltransf 96.8 0.00012 2.6E-09 81.3 -3.2 121 460-580 252-403 (444)
307 PRK14901 16S rRNA methyltransf 96.8 9.9E-05 2.2E-09 81.7 -3.9 120 460-580 254-408 (434)
308 COG1352 CheR Methylase of chem 96.8 0.00031 6.6E-09 72.6 -0.2 102 214-315 96-240 (268)
309 TIGR00563 rsmB ribosomal RNA s 96.7 0.0001 2.2E-09 81.4 -4.4 101 460-561 240-368 (426)
310 KOG1661 Protein-L-isoaspartate 96.7 0.00061 1.3E-08 67.0 1.0 94 215-315 83-192 (237)
311 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.7 0.0004 8.6E-09 71.3 -0.4 64 278-347 158-237 (256)
312 PLN02589 caffeoyl-CoA O-methyl 96.6 0.00024 5.3E-09 72.7 -2.0 95 216-315 81-189 (247)
313 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.00021 4.5E-09 74.0 -2.7 101 461-561 74-199 (264)
314 PRK03612 spermidine synthase; 96.6 0.00031 6.6E-09 79.6 -1.5 121 458-579 297-438 (521)
315 PRK04338 N(2),N(2)-dimethylgua 96.6 0.0002 4.3E-09 78.0 -3.1 95 216-316 59-158 (382)
316 KOG3420 Predicted RNA methylas 96.6 0.00037 8.1E-09 64.6 -0.9 71 215-286 49-122 (185)
317 PF06080 DUF938: Protein of un 96.6 0.00053 1.1E-08 67.8 -0.2 133 461-604 28-204 (204)
318 PF02527 GidB: rRNA small subu 96.5 0.00054 1.2E-08 67.1 -0.3 136 434-580 26-170 (184)
319 PRK15128 23S rRNA m(5)C1962 me 96.5 0.00054 1.2E-08 74.9 -0.4 101 460-562 222-340 (396)
320 PF02390 Methyltransf_4: Putat 96.5 0.0002 4.4E-09 70.7 -3.5 116 461-580 20-155 (195)
321 PRK13943 protein-L-isoaspartat 96.5 0.00016 3.4E-09 76.9 -4.8 91 460-561 82-180 (322)
322 KOG3191 Predicted N6-DNA-methy 96.5 0.0018 3.9E-08 62.4 2.8 131 215-361 44-199 (209)
323 KOG1271 Methyltransferases [Ge 96.5 0.00053 1.1E-08 66.0 -0.8 122 461-584 70-204 (227)
324 PRK11933 yebU rRNA (cytosine-C 96.5 0.00065 1.4E-08 75.7 -0.4 120 214-339 113-260 (470)
325 PRK14903 16S rRNA methyltransf 96.4 0.00019 4.1E-09 79.5 -4.9 111 460-574 239-383 (431)
326 PF01170 UPF0020: Putative RNA 96.4 0.00075 1.6E-08 65.7 -0.2 96 216-315 30-150 (179)
327 COG3963 Phospholipid N-methylt 96.4 0.00097 2.1E-08 63.4 0.5 96 215-315 49-155 (194)
328 PRK00536 speE spermidine synth 96.4 0.0014 3.1E-08 67.5 1.7 112 193-319 57-174 (262)
329 TIGR02143 trmA_only tRNA (urac 96.3 0.00088 1.9E-08 72.2 -0.2 93 217-318 200-313 (353)
330 KOG2940 Predicted methyltransf 96.3 0.002 4.3E-08 64.1 2.2 115 461-581 75-223 (325)
331 COG0421 SpeE Spermidine syntha 96.2 0.0015 3.2E-08 68.2 0.8 102 215-318 77-192 (282)
332 COG2242 CobL Precorrin-6B meth 96.2 0.00048 1E-08 66.9 -2.6 108 461-580 37-156 (187)
333 PLN02781 Probable caffeoyl-CoA 96.2 0.00023 4.9E-09 72.4 -5.3 96 456-561 66-178 (234)
334 COG0030 KsgA Dimethyladenosine 96.2 0.0026 5.6E-08 65.3 2.2 82 194-285 18-102 (259)
335 KOG2352 Predicted spermine/spe 96.1 0.0014 3.1E-08 71.9 0.1 100 217-317 51-162 (482)
336 PF01728 FtsJ: FtsJ-like methy 96.1 0.00073 1.6E-08 65.5 -1.9 96 211-318 20-141 (181)
337 PF02475 Met_10: Met-10+ like- 96.1 0.0012 2.7E-08 65.4 -0.4 126 171-313 68-199 (200)
338 COG4627 Uncharacterized protei 96.1 0.00086 1.9E-08 62.9 -1.7 52 269-320 38-90 (185)
339 PRK05031 tRNA (uracil-5-)-meth 96.0 0.0019 4.2E-08 69.9 0.5 94 216-318 208-322 (362)
340 PRK13168 rumA 23S rRNA m(5)U19 96.0 0.0024 5.2E-08 71.0 0.9 108 460-580 299-419 (443)
341 PF01135 PCMT: Protein-L-isoas 96.0 0.00015 3.3E-09 72.4 -7.8 92 454-562 70-173 (209)
342 PF01564 Spermine_synth: Sperm 95.9 0.00068 1.5E-08 69.5 -3.4 119 191-316 59-191 (246)
343 COG1189 Predicted rRNA methyla 95.9 0.0045 9.8E-08 62.3 2.1 131 460-605 81-243 (245)
344 PRK03522 rumB 23S rRNA methylu 95.8 0.0017 3.6E-08 69.0 -1.1 107 460-580 175-291 (315)
345 TIGR00095 RNA methyltransferas 95.8 0.003 6.4E-08 62.1 0.7 97 216-316 51-159 (189)
346 PF05185 PRMT5: PRMT5 arginine 95.8 0.00077 1.7E-08 74.8 -3.9 128 428-558 152-294 (448)
347 KOG1269 SAM-dependent methyltr 95.8 0.0014 3E-08 70.7 -2.0 95 461-563 113-217 (364)
348 KOG3178 Hydroxyindole-O-methyl 95.7 0.0014 3E-08 69.3 -2.0 96 215-317 178-276 (342)
349 PF03291 Pox_MCEL: mRNA cappin 95.7 0.0005 1.1E-08 73.4 -5.5 105 458-564 62-189 (331)
350 KOG1499 Protein arginine N-met 95.7 0.0013 2.8E-08 69.5 -2.4 93 460-558 62-164 (346)
351 PF09243 Rsm22: Mitochondrial 95.6 0.0036 7.9E-08 65.1 0.4 99 215-319 34-142 (274)
352 PRK13256 thiopurine S-methyltr 95.6 0.0012 2.5E-08 66.8 -3.3 115 460-581 45-195 (226)
353 PF02527 GidB: rRNA small subu 95.5 0.0015 3.3E-08 64.0 -2.6 92 217-315 51-147 (184)
354 COG1092 Predicted SAM-dependen 95.5 0.0026 5.6E-08 69.1 -1.2 105 215-320 218-340 (393)
355 KOG0820 Ribosomal RNA adenine 95.4 0.01 2.2E-07 60.8 2.8 67 214-285 58-130 (315)
356 COG4627 Uncharacterized protei 95.4 0.0084 1.8E-07 56.4 2.1 44 518-563 45-88 (185)
357 PHA03412 putative methyltransf 95.4 0.00089 1.9E-08 67.8 -4.8 94 461-556 52-158 (241)
358 KOG2904 Predicted methyltransf 95.4 0.0092 2E-07 61.1 2.3 121 435-562 129-286 (328)
359 COG2265 TrmA SAM-dependent met 95.4 0.008 1.7E-07 66.5 2.0 96 215-319 294-399 (432)
360 KOG1331 Predicted methyltransf 95.3 0.0056 1.2E-07 63.0 0.8 92 462-559 49-141 (293)
361 smart00650 rADc Ribosomal RNA 95.3 0.0014 3E-08 63.0 -3.7 97 459-564 14-116 (169)
362 COG2518 Pcm Protein-L-isoaspar 95.2 0.00099 2.2E-08 66.0 -5.2 90 460-562 74-170 (209)
363 PLN02476 O-methyltransferase 95.2 0.0048 1E-07 64.2 -0.5 98 455-562 115-229 (278)
364 PRK04148 hypothetical protein; 95.1 0.014 3E-07 54.2 2.6 66 215-287 17-86 (134)
365 COG0357 GidB Predicted S-adeno 95.1 0.01 2.2E-07 59.4 1.9 157 433-604 44-212 (215)
366 TIGR00479 rumA 23S rRNA (uraci 95.1 0.009 1.9E-07 66.2 1.6 110 460-580 294-415 (431)
367 KOG1500 Protein arginine N-met 95.1 0.0052 1.1E-07 64.2 -0.3 96 215-315 178-281 (517)
368 PF02384 N6_Mtase: N-6 DNA Met 95.1 0.0022 4.7E-08 67.7 -3.3 119 192-319 32-186 (311)
369 COG0500 SmtA SAM-dependent met 95.0 0.0033 7.1E-08 55.5 -1.9 95 462-564 52-158 (257)
370 COG3897 Predicted methyltransf 95.0 0.0061 1.3E-07 59.5 -0.2 100 214-319 79-181 (218)
371 COG2519 GCD14 tRNA(1-methylade 95.0 0.0035 7.5E-08 63.7 -2.0 110 461-581 97-216 (256)
372 KOG1975 mRNA cap methyltransfe 94.9 0.018 3.9E-07 60.3 3.0 54 519-572 195-250 (389)
373 PLN02672 methionine S-methyltr 94.9 0.004 8.6E-08 75.4 -2.2 120 461-581 121-299 (1082)
374 KOG2915 tRNA(1-methyladenosine 94.7 0.037 7.9E-07 56.8 4.4 127 196-345 95-231 (314)
375 TIGR03439 methyl_EasF probable 94.6 0.0075 1.6E-07 64.1 -0.7 101 216-316 78-197 (319)
376 TIGR02987 met_A_Alw26 type II 94.6 0.017 3.7E-07 65.6 2.1 71 215-285 32-119 (524)
377 KOG2187 tRNA uracil-5-methyltr 94.6 0.026 5.7E-07 62.4 3.4 82 175-267 350-438 (534)
378 TIGR00308 TRM1 tRNA(guanine-26 94.4 0.0038 8.2E-08 67.8 -3.6 94 216-315 46-146 (374)
379 PF11968 DUF3321: Putative met 94.4 0.021 4.5E-07 56.9 1.9 110 460-581 53-177 (219)
380 PRK00536 speE spermidine synth 94.4 0.0057 1.2E-07 63.1 -2.2 97 453-564 67-174 (262)
381 COG0357 GidB Predicted S-adeno 94.4 0.022 4.8E-07 57.1 2.0 119 215-345 68-191 (215)
382 PF01596 Methyltransf_3: O-met 94.4 0.0029 6.3E-08 63.1 -4.3 101 454-563 41-157 (205)
383 KOG1663 O-methyltransferase [S 94.3 0.012 2.7E-07 58.9 0.0 95 216-315 75-182 (237)
384 COG0220 Predicted S-adenosylme 94.3 0.0047 1E-07 62.5 -3.0 112 461-575 51-180 (227)
385 COG2520 Predicted methyltransf 94.2 0.031 6.8E-07 59.7 3.0 120 215-342 189-313 (341)
386 PF05724 TPMT: Thiopurine S-me 94.2 0.0044 9.6E-08 62.3 -3.5 114 461-580 40-185 (218)
387 PRK11760 putative 23S rRNA C24 94.1 0.024 5.3E-07 60.3 1.8 84 214-309 211-296 (357)
388 KOG2899 Predicted methyltransf 94.1 0.0078 1.7E-07 60.6 -1.8 44 519-562 165-210 (288)
389 PF03602 Cons_hypoth95: Conser 94.0 0.0043 9.4E-08 60.7 -3.7 131 175-316 10-153 (183)
390 PF05958 tRNA_U5-meth_tr: tRNA 93.9 0.019 4.1E-07 62.0 0.6 53 217-270 199-254 (352)
391 TIGR02085 meth_trns_rumB 23S r 93.9 0.015 3.3E-07 63.2 -0.3 106 460-580 235-351 (374)
392 COG0144 Sun tRNA and rRNA cyto 93.5 0.019 4.1E-07 62.0 -0.4 122 213-340 155-307 (355)
393 PF08123 DOT1: Histone methyla 93.5 0.009 1.9E-07 59.6 -2.6 119 187-315 23-157 (205)
394 KOG2798 Putative trehalase [Ca 93.4 0.013 2.8E-07 61.0 -1.6 71 277-348 258-336 (369)
395 PRK00050 16S rRNA m(4)C1402 me 93.4 0.023 5E-07 59.7 0.2 54 216-271 21-79 (296)
396 COG0293 FtsJ 23S rRNA methylas 93.4 0.013 2.9E-07 58.0 -1.6 93 216-319 47-162 (205)
397 PLN02823 spermine synthase 93.2 0.014 3.1E-07 62.4 -1.9 99 457-561 102-220 (336)
398 PRK04148 hypothetical protein; 93.1 0.0052 1.1E-07 57.0 -4.7 87 460-581 18-106 (134)
399 PF10672 Methyltrans_SAM: S-ad 93.0 0.004 8.7E-08 65.1 -6.2 100 216-316 125-238 (286)
400 PF10294 Methyltransf_16: Puta 93.0 0.0081 1.8E-07 58.1 -3.7 123 435-563 17-158 (173)
401 PF00398 RrnaAD: Ribosomal RNA 92.8 0.046 1E-06 56.4 1.2 74 192-275 16-91 (262)
402 PRK14896 ksgA 16S ribosomal RN 92.8 0.0089 1.9E-07 61.6 -4.1 69 459-530 30-101 (258)
403 PF09445 Methyltransf_15: RNA 92.7 0.016 3.5E-07 55.6 -2.1 68 217-285 2-76 (163)
404 COG1352 CheR Methylase of chem 92.5 0.024 5.3E-07 58.7 -1.2 132 430-565 69-245 (268)
405 COG5459 Predicted rRNA methyla 92.5 0.031 6.7E-07 59.1 -0.5 102 216-318 115-227 (484)
406 COG0742 N6-adenine-specific me 92.5 0.062 1.3E-06 52.6 1.6 131 175-316 11-154 (187)
407 PRK10909 rsmD 16S rRNA m(2)G96 92.4 0.013 2.9E-07 58.1 -3.2 95 461-563 56-161 (199)
408 PRK10611 chemotaxis methyltran 92.3 0.05 1.1E-06 57.0 0.7 45 519-565 222-266 (287)
409 PRK00274 ksgA 16S ribosomal RN 92.2 0.011 2.4E-07 61.3 -4.3 39 460-501 44-83 (272)
410 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.1 0.051 1.1E-06 56.0 0.6 86 517-604 155-256 (256)
411 COG4122 Predicted O-methyltran 92.0 0.012 2.6E-07 59.1 -4.0 98 454-561 55-166 (219)
412 COG0293 FtsJ 23S rRNA methylas 91.8 0.3 6.4E-06 48.6 5.5 132 460-604 47-200 (205)
413 PF08704 GCD14: tRNA methyltra 91.8 0.016 3.5E-07 59.4 -3.6 115 454-581 38-167 (247)
414 PF01269 Fibrillarin: Fibrilla 91.4 0.029 6.2E-07 56.2 -2.1 125 214-345 73-208 (229)
415 PF01739 CheR: CheR methyltran 91.2 0.044 9.5E-07 54.3 -1.1 45 519-565 135-179 (196)
416 PF07942 N2227: N2227-like pro 90.9 0.069 1.5E-06 55.4 0.0 59 519-581 164-238 (270)
417 KOG3201 Uncharacterized conser 90.9 0.013 2.9E-07 55.5 -4.7 74 275-356 100-174 (201)
418 COG1041 Predicted DNA modifica 90.8 0.084 1.8E-06 56.3 0.6 113 461-581 200-326 (347)
419 KOG3987 Uncharacterized conser 90.6 0.017 3.6E-07 56.9 -4.5 90 460-560 114-206 (288)
420 PRK11760 putative 23S rRNA C24 90.4 0.041 8.9E-07 58.6 -2.1 90 460-562 213-306 (357)
421 KOG1709 Guanidinoacetate methy 90.4 0.072 1.6E-06 52.9 -0.4 112 192-314 88-204 (271)
422 TIGR02143 trmA_only tRNA (urac 90.2 0.099 2.1E-06 56.5 0.5 105 461-580 200-329 (353)
423 COG1092 Predicted SAM-dependen 89.6 0.22 4.8E-06 54.4 2.6 111 460-576 219-357 (393)
424 COG4262 Predicted spermidine s 89.3 0.12 2.6E-06 55.0 0.3 120 215-343 290-430 (508)
425 COG1189 Predicted rRNA methyla 88.8 0.51 1.1E-05 47.8 4.3 121 215-345 80-220 (245)
426 COG0116 Predicted N6-adenine-s 88.8 0.17 3.8E-06 54.6 1.0 69 216-285 193-306 (381)
427 PRK05031 tRNA (uracil-5-)-meth 88.7 0.091 2E-06 57.0 -1.2 105 461-580 209-338 (362)
428 COG3129 Predicted SAM-dependen 88.6 0.55 1.2E-05 47.3 4.3 101 189-291 55-166 (292)
429 TIGR00755 ksgA dimethyladenosi 88.5 0.05 1.1E-06 55.8 -3.2 39 458-499 29-68 (253)
430 COG4076 Predicted RNA methylas 88.5 0.19 4E-06 49.1 0.9 91 216-313 34-132 (252)
431 PF13578 Methyltransf_24: Meth 88.4 0.16 3.5E-06 44.4 0.4 92 463-561 1-105 (106)
432 PF13679 Methyltransf_32: Meth 88.4 0.25 5.5E-06 46.0 1.8 39 213-251 24-70 (141)
433 KOG3115 Methyltransferase-like 88.2 0.66 1.4E-05 45.9 4.5 35 542-576 164-199 (249)
434 PTZ00338 dimethyladenosine tra 87.7 0.039 8.5E-07 58.1 -4.7 64 461-527 39-108 (294)
435 PF03269 DUF268: Caenorhabditi 86.9 0.29 6.2E-06 46.7 1.1 51 514-564 57-114 (177)
436 PF09243 Rsm22: Mitochondrial 86.9 0.12 2.6E-06 53.9 -1.6 117 458-580 33-163 (274)
437 TIGR01444 fkbM_fam methyltrans 86.7 0.19 4.1E-06 46.3 -0.2 35 217-251 1-39 (143)
438 PF13578 Methyltransf_24: Meth 86.6 0.024 5.1E-07 49.8 -6.1 93 219-315 1-104 (106)
439 PLN02589 caffeoyl-CoA O-methyl 86.5 0.064 1.4E-06 55.0 -3.8 99 454-561 75-190 (247)
440 COG2263 Predicted RNA methylas 86.4 0.043 9.4E-07 53.6 -4.7 113 461-580 48-163 (198)
441 KOG1500 Protein arginine N-met 85.6 0.14 3.1E-06 53.8 -1.7 91 459-558 178-279 (517)
442 COG1889 NOP1 Fibrillarin-like 85.6 0.47 1E-05 46.9 1.9 129 213-347 75-212 (231)
443 PF05971 Methyltransf_10: Prot 85.4 0.49 1.1E-05 49.8 2.1 94 191-287 82-186 (299)
444 PF03492 Methyltransf_7: SAM d 84.9 1.2 2.6E-05 47.8 4.8 85 211-296 13-124 (334)
445 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.9 0.039 8.5E-07 57.8 -6.4 108 215-323 86-226 (283)
446 PF04816 DUF633: Family of unk 84.5 0.14 3.1E-06 51.0 -2.3 115 218-347 1-122 (205)
447 PLN02668 indole-3-acetate carb 84.5 1.7 3.6E-05 47.5 5.7 45 270-315 154-198 (386)
448 PF04672 Methyltransf_19: S-ad 84.4 0.23 5E-06 51.3 -0.8 104 214-319 68-193 (267)
449 KOG2798 Putative trehalase [Ca 84.3 0.45 9.8E-06 49.9 1.2 59 519-581 258-333 (369)
450 COG0421 SpeE Spermidine syntha 83.6 0.16 3.4E-06 53.2 -2.5 101 454-560 72-189 (282)
451 PF01269 Fibrillarin: Fibrilla 83.4 0.095 2.1E-06 52.6 -4.0 132 461-603 76-226 (229)
452 COG4798 Predicted methyltransf 83.2 0.37 8E-06 47.3 0.0 102 461-564 51-169 (238)
453 COG4798 Predicted methyltransf 82.8 0.63 1.4E-05 45.8 1.5 129 215-347 49-203 (238)
454 KOG1661 Protein-L-isoaspartate 82.8 0.1 2.2E-06 51.7 -4.0 36 519-564 161-196 (237)
455 PRK13699 putative methylase; P 82.3 1.7 3.7E-05 44.0 4.5 65 541-605 52-121 (227)
456 PRK11933 yebU rRNA (cytosine-C 82.3 0.12 2.6E-06 57.9 -4.2 101 461-562 116-243 (470)
457 PF02475 Met_10: Met-10+ like- 81.8 0.089 1.9E-06 52.2 -4.9 91 454-558 99-199 (200)
458 PF06859 Bin3: Bicoid-interact 81.4 0.16 3.5E-06 45.3 -2.9 60 521-580 2-71 (110)
459 KOG3178 Hydroxyindole-O-methyl 80.4 0.47 1E-05 50.5 -0.3 100 457-563 176-277 (342)
460 KOG3115 Methyltransferase-like 80.3 0.58 1.2E-05 46.3 0.2 26 217-242 63-92 (249)
461 KOG0822 Protein kinase inhibit 80.1 0.83 1.8E-05 51.0 1.3 101 215-316 368-478 (649)
462 KOG1122 tRNA and rRNA cytosine 79.1 0.57 1.2E-05 51.0 -0.2 109 211-323 238-378 (460)
463 KOG1709 Guanidinoacetate methy 79.1 0.94 2E-05 45.3 1.3 100 457-564 100-209 (271)
464 PF13679 Methyltransf_32: Meth 78.3 0.87 1.9E-05 42.3 0.8 47 442-491 5-61 (141)
465 PF01564 Spermine_synth: Sperm 78.2 0.2 4.3E-06 51.4 -3.9 103 457-561 75-191 (246)
466 KOG3201 Uncharacterized conser 78.1 0.66 1.4E-05 44.4 -0.1 114 460-580 31-161 (201)
467 COG5459 Predicted rRNA methyla 78.0 0.51 1.1E-05 50.2 -1.0 99 462-563 117-227 (484)
468 PRK04338 N(2),N(2)-dimethylgua 77.4 0.26 5.6E-06 53.9 -3.6 91 461-562 60-159 (382)
469 COG3963 Phospholipid N-methylt 76.3 0.28 6.2E-06 47.0 -3.1 110 449-560 39-155 (194)
470 PF12147 Methyltransf_20: Puta 75.0 0.27 5.8E-06 51.3 -4.0 106 457-563 134-251 (311)
471 PF01861 DUF43: Protein of unk 74.8 0.62 1.3E-05 47.4 -1.3 128 215-353 45-182 (243)
472 KOG3191 Predicted N6-DNA-methy 72.7 0.95 2E-05 44.1 -0.6 120 459-580 44-188 (209)
473 PF03059 NAS: Nicotianamine sy 72.6 0.51 1.1E-05 49.2 -2.7 100 214-315 120-229 (276)
474 PF07757 AdoMet_MTase: Predict 72.2 1.3 2.9E-05 39.4 0.3 29 215-243 59-87 (112)
475 PF06962 rRNA_methylase: Putat 71.7 0.26 5.7E-06 46.1 -4.5 100 237-339 2-112 (140)
476 PF05430 Methyltransf_30: S-ad 71.6 2.6 5.6E-05 38.6 2.0 78 513-605 43-124 (124)
477 COG1064 AdhP Zn-dependent alco 70.8 1 2.2E-05 48.3 -1.0 93 213-318 165-261 (339)
478 PRK00050 16S rRNA m(4)C1402 me 69.2 0.26 5.7E-06 51.8 -5.7 41 461-501 22-63 (296)
479 KOG2920 Predicted methyltransf 66.2 1.2 2.6E-05 46.3 -1.5 44 278-321 196-239 (282)
480 PF01555 N6_N4_Mtase: DNA meth 65.9 2.1 4.7E-05 42.0 0.3 68 540-607 35-113 (231)
481 PF07091 FmrO: Ribosomal RNA m 65.9 3.7 8.1E-05 42.1 2.0 71 215-287 106-180 (251)
482 PF10354 DUF2431: Domain of un 65.6 1.4 3E-05 42.5 -1.2 116 221-345 3-148 (166)
483 PF01170 UPF0020: Putative RNA 63.8 0.45 9.7E-06 46.3 -5.0 117 460-580 30-166 (179)
484 PF03269 DUF268: Caenorhabditi 63.4 1.1 2.5E-05 42.8 -2.1 45 276-320 61-115 (177)
485 TIGR00308 TRM1 tRNA(guanine-26 63.1 0.69 1.5E-05 50.4 -4.1 92 461-562 47-148 (374)
486 PF14740 DUF4471: Domain of un 61.1 6.1 0.00013 41.5 2.6 65 276-346 220-286 (289)
487 KOG2198 tRNA cytosine-5-methyl 59.8 3.7 7.9E-05 44.3 0.7 126 194-324 138-304 (375)
488 PRK11727 23S rRNA mA1618 methy 59.3 3 6.4E-05 44.6 -0.1 33 456-490 112-145 (321)
489 COG1889 NOP1 Fibrillarin-like 59.2 3.9 8.4E-05 40.7 0.7 133 461-604 79-228 (231)
490 KOG1663 O-methyltransferase [S 58.5 0.76 1.6E-05 46.3 -4.4 98 454-561 69-183 (237)
491 PRK11524 putative methyltransf 57.5 13 0.00028 38.8 4.4 65 540-605 59-130 (284)
492 PF04989 CmcI: Cephalosporin h 56.9 1.1 2.3E-05 44.8 -3.7 101 216-319 34-150 (206)
493 PF06859 Bin3: Bicoid-interact 56.8 0.65 1.4E-05 41.5 -4.6 39 278-316 1-44 (110)
494 KOG4058 Uncharacterized conser 56.1 7.7 0.00017 36.7 2.0 83 195-283 58-145 (199)
495 KOG2730 Methylase [General fun 55.5 1.4 3E-05 44.2 -3.1 94 216-313 96-199 (263)
496 TIGR00095 RNA methyltransferas 55.3 4.5 9.8E-05 39.7 0.4 28 461-490 52-79 (189)
497 TIGR03439 methyl_EasF probable 54.2 17 0.00038 38.7 4.6 99 461-562 79-198 (319)
498 TIGR01444 fkbM_fam methyltrans 53.6 4.5 9.7E-05 37.0 0.1 29 461-489 1-31 (143)
499 KOG4589 Cell division protein 53.6 29 0.00063 34.3 5.6 123 462-604 73-225 (232)
500 KOG1099 SAM-dependent methyltr 53.5 1.7 3.8E-05 43.8 -2.8 86 216-313 43-160 (294)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.5e-136 Score=1091.12 Aligned_cols=500 Identities=57% Similarity=1.051 Sum_probs=478.0
Q ss_pred ccccccchhhHHHhhccc--ccchhhhhhhcCCCCCCccccccCCCCCCcccccCCCchhhhhhcCCCCcccccccCCCC
Q 007128 92 ELIPCLDRNLIYQMRLKL--DLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQN 169 (617)
Q Consensus 92 ~~~pc~d~~~~~~~~~~~--~~~~~~~~er~Cp~~~~~~~Clvp~P~~y~~P~~wP~s~d~~w~~n~~h~~L~~~~~~q~ 169 (617)
|||||+|+ ++++++ ++++|||||||||+.+++++||||+|++|+.||+||+|||++|++|+||++|+.+|..||
T Consensus 1 dy~PC~D~----~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qn 76 (506)
T PF03141_consen 1 DYIPCLDN----SRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQN 76 (506)
T ss_pred CCcCCCCH----HHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhccccc
Confidence 79999999 444444 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccchhhhhccCCCccch
Q 007128 170 WMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQ 249 (617)
Q Consensus 170 w~~~~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~ 249 (617)
|++.+|+.+.||||+++|.+++..|++.|.++++. +..++..+++||||||+|+|+++|++++|+++.+++.+.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~----~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPL----IKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhc----cccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 99999999999999999999999999999999987 34678889999999999999999999999999999999999
Q ss_pred hhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhh-cCCHHHHH
Q 007128 250 NQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLR 328 (617)
Q Consensus 250 a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~ 328 (617)
+++|+|++||+++.+.+....+|||++++||+|||++|++.|..+.+.+|.|++|+|||||||+++.|+.+ ...++...
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~ 232 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEE 232 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHH
Confidence 99999999999999998888999999999999999999999999888899999999999999999999998 55566778
Q ss_pred HHHHHHHHHHHhhhhhhhccCceEEEeccCCccccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCC
Q 007128 329 IWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGL 408 (617)
Q Consensus 329 ~w~~l~~l~~~~gf~~v~~~~~~~iw~k~~~~~c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~ 408 (617)
.|+.++++++++||+++.++++++|||||.+++||..++....|++|..+++++++||++|++||+++|+..++.+++++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~ 312 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWL 312 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCC
Confidence 89999999999999999999999999999999999998877789999988999999999999999999999888999999
Q ss_pred CcCCCccCCCCCcccc---cCCChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEE
Q 007128 409 APWPARLTAPSPRLAD---FGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMS 485 (617)
Q Consensus 409 ~~wp~Rl~~~p~~~~~---~g~~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~ 485 (617)
++||+||+++|+|+.+ .|++.|.|.+|++.|+++|++|+++++..+++++||||||||||+|||||+|++++|||||
T Consensus 313 ~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMN 392 (506)
T PF03141_consen 313 PKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMN 392 (506)
T ss_pred CCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEE
Confidence 9999999999999987 6889999999999999999999999887799999999999999999999999999999999
Q ss_pred eecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 486 VVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 486 v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
|+|+.++|||++||+|||||+||||||+|+|||||||||||+++|+.. +++|+++++|+||||||||||++||||+.++
T Consensus 393 VVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 393 VVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred ecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 999999999999999999999999999999999999999999999955 5899999999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 566 VDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 566 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++|++|+++|+|++ +++| +|+++.++|+||+|||
T Consensus 472 l~~v~~i~~~lrW~~--~~~d--~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEV--RIHD--TEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceE--EEEe--cCCCCCCCceEEEEEC
Confidence 999999999999999 8999 5666689999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.91 E-value=1.4e-25 Score=241.10 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=146.5
Q ss_pred ceeeccCCccccccCCCCCCcCCCccC------CCCCccccc-C----C----ChhhhhhhHHHHHHHHHHHHHhhcccc
Q 007128 390 EACITPYSDHDQKARGSGLAPWPARLT------APSPRLADF-G----Y----SSEMFEKDTESWRNRVDSYWNLLSPKI 454 (617)
Q Consensus 390 ~~ci~~~~~~~~~~~~~~~~~wp~Rl~------~~p~~~~~~-g----~----~~e~F~~D~~~Wk~~V~~y~~~l~~~i 454 (617)
..|+-|.|..+. .+-+||+.-. .+-..+.+. + + ..=.|......+.+.+.+|.+.|.+++
T Consensus 35 ~~CLVp~P~gYk-----~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 35 LRCLVPPPKGYK-----TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CccccCCCccCC-----CCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 458888887654 2467887652 222333221 1 1 122367777777888888887777655
Q ss_pred ----CccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhh-hhhcccCCcchhhhhhhh
Q 007128 455 ----QSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNW-CEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 455 ----~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~-~e~~~~~p~tfDlvh~~~ 528 (617)
..+.||.+||+|||+|+|||+|.+++|.+|++.|.|. ++++++|.|||+.+++... ...+|.+.++||+|||..
T Consensus 110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccc
Confidence 3489999999999999999999999999999999996 7999999999986555443 245663349999999988
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeE
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEV 598 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 598 (617)
.+..-.. +-...|.|+||||||||+||++.++. .+++|++++++|||+.+++.. .
T Consensus 190 c~i~W~~---~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~------------~ 254 (506)
T PF03141_consen 190 CLIPWHP---NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG------------D 254 (506)
T ss_pred ccccchh---cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC------------C
Confidence 7763221 22479999999999999999998863 677899999999999963222 2
Q ss_pred EEEEEecc
Q 007128 599 VFIVQKKI 606 (617)
Q Consensus 599 ~l~~~K~~ 606 (617)
+.|-||+.
T Consensus 255 ~aIwqKp~ 262 (506)
T PF03141_consen 255 TAIWQKPT 262 (506)
T ss_pred EEEEeccC
Confidence 88888854
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.86 E-value=4.5e-24 Score=237.29 Aligned_cols=308 Identities=16% Similarity=0.195 Sum_probs=176.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc--ccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK--RLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~--~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..|++. .|+++|+++.++..+.. ......++.+.++|+. .+|+++++||+|+|..+++|+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 58999999999999999875 58999999988765432 1111234667777764 567888999999999886555
Q ss_pred ccc-cceEEEEecccccCCceeeecChhhhcC-------CHHHHHHHHHHHHHHHHhhhhhhhccCce--EEEeccCCcc
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSSPEAYAQ-------DEEDLRIWKEMSALVERMCWRIAAKRNQT--VVWQKPLNND 361 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~-------~~~~~~~w~~l~~l~~~~gf~~v~~~~~~--~iw~k~~~~~ 361 (617)
.++ ...+++++.|+|||||++++........ ++........+.+++.+.+|......... ..+.+..+
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-- 194 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIG-- 194 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechh--
Confidence 432 2569999999999999999964332211 11111112567778888888655433111 11111111
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCCCcCCCccCCCCCcccccCC-ChhhhhhhHHHHH
Q 007128 362 CYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGY-SSEMFEKDTESWR 440 (617)
Q Consensus 362 c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~~~wp~Rl~~~p~~~~~~g~-~~e~F~~D~~~Wk 440 (617)
-|... ...|...+..= .++... ....+..+-+|+.-.+ .|+ ..+.|......+.
T Consensus 195 ~~~~~---------------~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~y~~-----~~i~~~~~f~g~~~~v~ 249 (475)
T PLN02336 195 AYVKN---------------KKNQNQICWLW-QKVSST----NDKGFQRFLDNVQYKS-----SGILRYERVFGEGFVST 249 (475)
T ss_pred hhhhc---------------cCCcceEEEEE-EeecCC----cchhHHHHhhhhcccc-----ccHHHHHHHhCCCCCCC
Confidence 11111 11111111000 000000 0001122222211011 122 1122222222222
Q ss_pred HHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec--cc---ccc-hhhhhh
Q 007128 441 NRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR--GL---IGS-IHNWCE 512 (617)
Q Consensus 441 ~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r--gl---~~~-~~~~~e 512 (617)
..+..-..++.. +....-.+|||+|||+|.++..|++. +. +|+.+|. +.++..|.++ ++ +.. ..++.
T Consensus 250 ~~v~~te~l~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~- 324 (475)
T PLN02336 250 GGLETTKEFVDK-LDLKPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCT- 324 (475)
T ss_pred chHHHHHHHHHh-cCCCCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-
Confidence 223222333332 22233457999999999999999875 44 4666663 5677666544 22 111 11222
Q ss_pred hcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 513 AYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 513 ~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. .+| ++||+|+|..++.|+. +.+.+|.|+.|+|||||.++|.+.
T Consensus 325 ~~-~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 325 KK-TYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cC-CCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 11 244 7899999999999887 788999999999999999999864
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=7.2e-18 Score=170.45 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=76.5
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
++.+|||+|||||.++..++++ .|+++|+|+.|+..++.+.......++.+.++|++.+||++++||+|+|++++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4579999999999999888764 58999999999998886555444447899999999999999999999999985
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+ ..+...+|+|++|+|||||++++...
T Consensus 127 rn-~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 127 RN-FPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Hh-hCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 54 44557899999999999999998643
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=8.8e-18 Score=168.97 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=86.1
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
++.+|||||||||.++..+++. .|+++|+|+.|++.++.+.......++.|.++|++.|||+|++||+|++++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl- 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL- 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh-
Confidence 4589999999999999999875 59999999999988885444332233889999999999999999999999985
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+...+.+.+|+|++|||||||.+++..
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 555666899999999999999888853
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.44 E-value=2.1e-14 Score=147.77 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHH--H-hCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFAL--E-RGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~--~-rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+|||||||+|.++..|++. .|+|+|+|+.|+..++.+... . ...++.+.++|+..+|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999988887653 589999999998877643221 1 12357788899999999999999999998
Q ss_pred cccccccccceEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++ +..++..+++|+.|+|||||++++.+.
T Consensus 154 ~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 GLR-NVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccc-cCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 854 445667899999999999999988643
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.43 E-value=2e-14 Score=142.70 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=98.2
Q ss_pred cccCchhhHHHHHHhHhcCCCCCCC--------CCCceeEEEeecccccccccccccc----------hhhhhccCCCcc
Q 007128 186 HFHYGADKYIASIANMLNFSNDNIN--------NEGRLRTVLDVGCGVASFGAYLLSS----------DVITMSLAPNDV 247 (617)
Q Consensus 186 ~F~~~a~~Y~~~l~~lL~~~~~~l~--------~~~~~~~VLDVGCG~G~~~~~L~~~----------~V~gvDis~~dl 247 (617)
.|.+.+..| +.+.+++.+..+++| .++.+.++|||+||||.++..+.+. +|+++|+++.|+
T Consensus 65 vF~~vA~~Y-D~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 65 VFESVAKKY-DIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHH-HHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 355555555 555566655554443 2345689999999999888777653 589999999999
Q ss_pred chhhhHHHHHhCCC----cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 248 HQNQIQFALERGIP----AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 248 ~~a~~~~a~~rg~~----~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..+. +.+.++++. +.+..+|+++|||++++||+.++++.+-.+.+ +++.|+|++|||||||+|.+-.+
T Consensus 144 ~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 144 AVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 9887 445445543 66888899999999999999999988665554 47899999999999999998543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=3.5e-14 Score=146.39 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=86.7
Q ss_pred HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 195 IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 195 ~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
.+.+.+.+.+ .+ ..+|||||||+|..+..|+.. .|+++|+++.++..++.+... ..++.+..+|+..
T Consensus 41 ~~~~l~~l~l------~~--~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIEL------NE--NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCC------CC--CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc
Confidence 4455555554 33 368999999999988888653 589999988777666533221 2356777888888
Q ss_pred cCCCCCcccccccccccccccc-ccceEEEEecccccCCceeeecChh
Q 007128 272 LPYPSRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 272 lpf~~~sFDlV~~s~~l~h~~~-~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.|+++++||+|++..+++|+.. +...+++++.++|||||+|+++++.
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8999999999999887777642 5567999999999999999998653
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.40 E-value=4.9e-14 Score=150.47 Aligned_cols=102 Identities=23% Similarity=0.417 Sum_probs=84.1
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
++.+|||||||+|.++..|++. .|+|+|+++.++..++. .+.+.++ ++.+.++|+..+|+++++||+|++..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3468999999999999988864 68999999988877763 4444444 4788889999999999999999998886
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+|+. +...+++++.|+|||||++++++.
T Consensus 197 ~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 6654 446799999999999999999753
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.40 E-value=6.5e-15 Score=125.84 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=69.3
Q ss_pred Eeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 295 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~ 295 (617)
||+|||+|.++..|+++ .|+++|+++.++..++.. ... ..+.+..+|...+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~-~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKR-LKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHH-TTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhc-ccc--cCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999876 488888877655544421 111 12337888999999999999999999885554 666
Q ss_pred ceEEEEecccccCCceeee
Q 007128 296 GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 296 ~~~L~el~RvLrPGG~lvi 314 (617)
..+++|+.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 7899999999999999986
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.37 E-value=3.1e-14 Score=141.43 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=92.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
+.+|||||||.|.++..|++. .|+|+|+++..++.|+ ..|.+.++.+.+....++++-...++||+|+|..+++|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 368999999999999999986 5999999999999998 6788889998898888888887778999999999976655
Q ss_pred cccceEEEEecccccCCceeeecChhhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
++..+++.+.+.+||||.+++++.+..
T Consensus 139 -dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 139 -DPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 447899999999999999999987754
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.35 E-value=3.4e-14 Score=133.74 Aligned_cols=137 Identities=27% Similarity=0.499 Sum_probs=93.9
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT 269 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~ 269 (617)
..+.+.+.++++. ..+..+|||||||+|.++..|++. .++++|+++.++.. ........+.
T Consensus 7 ~~~~~~~~~~~~~-------~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~ 69 (161)
T PF13489_consen 7 RAYADLLERLLPR-------LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDA 69 (161)
T ss_dssp HCHHHHHHHHHTC-------TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEEC
T ss_pred HHHHHHHHHHhcc-------cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhh
Confidence 3455556666642 122368999999999999999776 58888888765543 2222233333
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHH---------------HHHH
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIW---------------KEMS 334 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w---------------~~l~ 334 (617)
...++++++||+|+|+.++. +..++..+|+++.++|||||+++++++............| +++.
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~-~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLE-HLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGG-GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred hhhhccccchhhHhhHHHHh-hcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence 45556788999999998854 5556688999999999999999998776421000000000 7888
Q ss_pred HHHHHhhhhhhh
Q 007128 335 ALVERMCWRIAA 346 (617)
Q Consensus 335 ~l~~~~gf~~v~ 346 (617)
.+++++||++++
T Consensus 149 ~ll~~~G~~iv~ 160 (161)
T PF13489_consen 149 QLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCEEEE
Confidence 999999987754
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.34 E-value=1e-13 Score=146.45 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=99.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC--CCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG--IPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+.+|||||||+|.++..|+.. .|+|+|+++.++..++.. +...+ .++.+.+++++.+++++++||+|+|..+++|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 468999999999999988765 599999999888777643 32222 2567788888899988889999999998655
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcC-------CHHHH--------HHH------HHHHHHHHHhhhhhhhccC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ-------DEEDL--------RIW------KEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~-------~~~~~--------~~w------~~l~~l~~~~gf~~v~~~~ 349 (617)
+ .++..+++++.++|||||.+++++++.... ..+.. ..| +++.+++++.||+++...+
T Consensus 211 v-~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 211 V-ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 5 455789999999999999999986443210 00000 012 7788999999998776543
Q ss_pred c
Q 007128 350 Q 350 (617)
Q Consensus 350 ~ 350 (617)
.
T Consensus 290 ~ 290 (322)
T PLN02396 290 F 290 (322)
T ss_pred e
Confidence 3
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.32 E-value=4.4e-13 Score=134.92 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=79.9
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++...+.....++.+..+|...+++++++||+|++..++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l- 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL- 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc-
Confidence 368999999999998888753 58999999988877764433222224677788888889888999999988774
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.++...+++++.++|+|||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 555565779999999999999999864
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=1.6e-13 Score=140.65 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=80.2
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC-CCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP-YPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..|++. .|+++|+++.++..++. .+.+.++ ++.+.++|+..++ +++++||+|+|..++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl- 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL- 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH-
Confidence 468999999999999999876 58999999998888773 4444443 4567777877764 667899999999874
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++..++..++.++.++|||||++++..
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 555566789999999999999998763
No 16
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=9.1e-13 Score=136.44 Aligned_cols=152 Identities=20% Similarity=0.356 Sum_probs=99.1
Q ss_pred hhhcCCCCcccccccCCCCeEEEeCceeecCCCCccccCchhh------H---HHHHHhHhcCCCCCCCCCCceeEEEee
Q 007128 151 VWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADK------Y---IASIANMLNFSNDNINNEGRLRTVLDV 221 (617)
Q Consensus 151 ~w~~n~~h~~L~~~~~~q~w~~~~~~~~~Fpgg~~~F~~~a~~------Y---~~~l~~lL~~~~~~l~~~~~~~~VLDV 221 (617)
.|.+...|+.-.+++++-|.+....+...-||....+...+.. | .+.+.+.+... + .....+|||+
T Consensus 18 ~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~---l--~~~~~~vLDi 92 (272)
T PRK11088 18 SWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAER---L--DEKATALLDI 92 (272)
T ss_pred EEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHh---c--CCCCCeEEEE
Confidence 4777777887666666666555433443444444333332221 1 22233333221 1 1223579999
Q ss_pred cccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 222 GCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 222 GCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
|||+|.++..|++. .++|+|+|+.++. .|.++..++.+.++|...+|+++++||+|++..+
T Consensus 93 GcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~-----~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------- 160 (272)
T PRK11088 93 GCGEGYYTHALADALPEITTMQLFGLDISKVAIK-----YAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA------- 160 (272)
T ss_pred CCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH-----HHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-------
Confidence 99999998887653 3678888776554 4445555677888999999999999999986542
Q ss_pred cceEEEEecccccCCceeeecChhhh
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
...+.|+.|+|||||+|++..+...
T Consensus 161 -~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 161 -PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred -CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 2356899999999999999876543
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.27 E-value=4.5e-13 Score=137.28 Aligned_cols=95 Identities=23% Similarity=0.429 Sum_probs=75.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..|++. .|+|+|+++.++..+ ++++ +.+..+|+..++ ++++||+|+|+.+ +|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a-----~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 100 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAA-----RERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQ 100 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HhcC--CcEEEcChhhCC-CCCCceEEEEehh-hh
Confidence 368999999999999888764 589999988766544 3333 556778887775 5679999999887 55
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|..+...+++++.++|||||++++..+.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 6666678999999999999999997543
No 18
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=1.2e-12 Score=146.43 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=153.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ .+.+..+|... ++++++||+|+|+--.+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 58999999999998877643 69999999988887774 3444444 35566666432 23456899999853211
Q ss_pred cccc-------------------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DWLQ-------------------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~~~-------------------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.... ....++.++.++|+|||.+++..- ... -+.+.+++...||..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----~~q-----~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----FKQ-----EEAVTQIFLDHGYNI 288 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----Cch-----HHHHHHHHHhcCCCc
Confidence 1000 001245677889999999998521 111 145677777778743
Q ss_pred hhccCceEEEeccCCccccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCCCcCCCccCCCCCcccc
Q 007128 345 AAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLAD 424 (617)
Q Consensus 345 v~~~~~~~iw~k~~~~~c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~~~wp~Rl~~~p~~~~~ 424 (617)
+. +++.-.+........ +.+ -..+.. .. +| .|
T Consensus 289 ~~------~~~D~~g~~R~v~~~-----~~~-----~~rs~~-rr--------------~g-------~~---------- 320 (506)
T PRK01544 289 ES------VYKDLQGHSRVILIS-----PIN-----LNRSYA-RR--------------IG-------KS---------- 320 (506)
T ss_pred eE------EEecCCCCceEEEec-----ccc-----CCccee-cc--------------CC-------CC----------
Confidence 32 233333333111110 000 000111 00 00 00
Q ss_pred cCCChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-----CCceEEEe
Q 007128 425 FGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-----PNTLKLIY 499 (617)
Q Consensus 425 ~g~~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-----~~~l~~~~ 499 (617)
++...-.--...|....-...++++ ..-..+||+|||.|.|...+|...=. .|++.++. ...+..+.
T Consensus 321 --~~~~q~~~~e~~~p~~~i~~eklf~-----~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~ 392 (506)
T PRK01544 321 --LSGVQQNLLDNELPKYLFSKEKLVN-----EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAG 392 (506)
T ss_pred --CCHHHHHHHHhhhhhhCCCHHHhCC-----CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHH
Confidence 0100000000111110001011111 12356999999999999999976211 14444442 13333344
Q ss_pred ecccccchhhhhhh----cccCC-cchhhhhhhhhhhhhh------hcCCCcccchhhccccccCcceEEEecC-hhHHH
Q 007128 500 DRGLIGSIHNWCEA----YSTYP-RTYDLLHAWTVFSDIE------KRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVD 567 (617)
Q Consensus 500 ~rgl~~~~~~~~e~----~~~~p-~tfDlvh~~~~~~~~~------~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~ 567 (617)
++|+ .++.-.+.+ ...+| +++|-||.+ |++=+ +.|=--...|.++.|+|||||.+.++.. .+..+
T Consensus 393 ~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 393 EQNI-TNFLLFPNNLDLILNDLPNNSLDGIYIL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred HcCC-CeEEEEcCCHHHHHHhcCcccccEEEEE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 4454 111111111 12344 889988752 33111 2232334889999999999998866544 55555
Q ss_pred HHHHhhhhc-cccc
Q 007128 568 FVKKYLRAL-NWEA 580 (617)
Q Consensus 568 ~~~~~~~~~-~w~~ 580 (617)
.+...+... +|+.
T Consensus 470 ~~~~~~~~~~~f~~ 483 (506)
T PRK01544 470 EAIELIQQNGNFEI 483 (506)
T ss_pred HHHHHHHhCCCeEe
Confidence 555555443 3554
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=1.6e-12 Score=144.81 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=81.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..|++. .|+|+|+|+.++..++. .+......+.+..+|...+++++++||+|+|..+++|+
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE-RAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence 468999999999988877764 58999999887776653 22223345778888988889988899999998886655
Q ss_pred ccccceEEEEecccccCCceeeecChh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.++..++++++|+|||||.++++++.
T Consensus 346 -~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 346 -QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred -CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 45578999999999999999997543
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.24 E-value=2.2e-12 Score=136.95 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=94.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..+++. .++++|+++.++..++.+.. ..++.+..+|...+++++++||+|+++.++.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 368999999999988777553 58899999887776653322 12456778899999999999999999887655
Q ss_pred cccccceEEEEecccccCCceeeecChhh--hcCCHHHHHHH------HHHHHHHHHhhhhhhhccC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA--YAQDEEDLRIW------KEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~~~~~~~~~w------~~l~~l~~~~gf~~v~~~~ 349 (617)
+. +...+|+++.|+|+|||.+++..+.. .+........| +++.++++++||+.+....
T Consensus 191 ~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 191 WP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 44 44679999999999999998864321 11111111112 7788999999998766443
No 21
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=2.2e-12 Score=131.74 Aligned_cols=99 Identities=26% Similarity=0.459 Sum_probs=80.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||+|||+|.++..|++. .++++|+++.++..+ +++.....+.++|++.+|+++++||+|+++.+ +||.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a-----~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQA-----RQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHH-----HhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhc
Confidence 468999999999998888764 588898888665544 33333345678899999999999999998876 6788
Q ss_pred cccceEEEEecccccCCceeeecChhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.++..+|.++.|+|+|||+++++.+..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 777889999999999999999987654
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=3.1e-12 Score=135.63 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=91.3
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHH-HhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++|||||||+|.++..+++. .|+|+|+++.++..+...... ....++.+..++++.+|+ +++||+|+|..+++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H- 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH- 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc-
Confidence 68999999999999888765 399999998776543321111 112357788888999998 789999999887655
Q ss_pred ccccceEEEEecccccCCceeeecChhhhc-----CCHHHH-----HHH-----HHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEEDL-----RIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~~~-----~~w-----~~l~~l~~~~gf~~v~ 346 (617)
..++..+|++++++|+|||.+++.+..... ..+... ..| .++..+++++||+.+.
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEE
Confidence 455578999999999999999986322110 000000 011 5788889999997654
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.19 E-value=2.8e-13 Score=115.66 Aligned_cols=90 Identities=27% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccccc---chhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 463 MDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIG---SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~---~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
||+|||+|.++..|+++ +. +|+.+|. +++++.+.++.... ..+.-.+.++.-+++||+|++..+|+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---
Confidence 79999999999999998 66 5666663 56777666664321 22222234432239999999999999884
Q ss_pred CCcccchhhccccccCcceEEE
Q 007128 538 CSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii 559 (617)
+...++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 789999999999999999987
No 24
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.18 E-value=1.8e-12 Score=113.01 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=57.6
Q ss_pred Eeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-C-CCCccccccccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-f-~~~sFDlV~~s~~l~h~~ 292 (617)
||||||+|.++..+++. .++++|+|+.++..++.+..............+..... . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999875 58999999999987776665544333222222222221 1 22699999999886554
Q ss_pred cccceEEEEecccccCCcee
Q 007128 293 QRDGILLLELDRLLRPGGYF 312 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~l 312 (617)
++...+++.+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66678999999999999986
No 25
>PRK05785 hypothetical protein; Provisional
Probab=99.17 E-value=2.4e-12 Score=129.84 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=71.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..|++. .|+|+|+|+.|++.++. +. .+.++|++.+|+++++||+|+|+.++ |+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-----~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-----AD---DKVVGSFEALPFRDKSFDVVMSSFAL-HA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-----cc---ceEEechhhCCCCCCCEEEEEecChh-hc
Confidence 368999999999999888775 58999999988776542 21 24567889999999999999999985 55
Q ss_pred ccccceEEEEecccccCCc
Q 007128 292 LQRDGILLLELDRLLRPGG 310 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG 310 (617)
..++..+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 5666889999999999953
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.16 E-value=5.9e-12 Score=127.75 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred eeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++.+..... ..++.+..+|+..++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 358999999999988777652 59999999988888774433221 23567888898888876 4899998887
Q ss_pred cccccc-ccceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQ-RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~-~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
++++.. +...+++++.|+|+|||.++++.+.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 544432 2356999999999999999998643
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.16 E-value=5.4e-12 Score=130.42 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=91.5
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|..+..++.. .|+++|+++.++..++.. ....++ ++.+..+|++.+|+++++||+|++..+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 469999999999866554432 489999999888877643 333343 566777889999998899999997765
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhcCCHH----HHHH----------HHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE----DLRI----------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~----~~~~----------w~~l~~l~~~~gf~~v~ 346 (617)
+|+..+...+++++.|+|||||+|++++......... .... ..++.++++..||..+.
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 4555555679999999999999999964322111110 0011 25677778888886553
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.14 E-value=7.8e-12 Score=127.72 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=77.1
Q ss_pred eeEEEeeccccccccccccc------chhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS------SDVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~------~~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
..+|||||||+|..+..+++ ..++++|+++.|+..++.+..... ..++.+.++|+..+|++ .||+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 36899999999998877654 269999999999988885544322 12567788888888775 4999998887
Q ss_pred ccccccc-cceEEEEecccccCCceeeecCh
Q 007128 288 RIDWLQR-DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 l~h~~~~-~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++...+ ...++++++++|||||.|+++..
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5444322 24689999999999999999753
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.14 E-value=1.2e-11 Score=123.75 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=86.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
.|.+.+.+.+.. .. +.+|||+|||+|.++..+++. .++++|+++.++..++.+ ......++.+...
T Consensus 6 ~~~~~~~~~~~~------~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~ 76 (241)
T PRK08317 6 RYRARTFELLAV------QP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHcCC------CC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEec
Confidence 444555555554 32 368999999999998888653 588999988776655533 1122345677778
Q ss_pred cccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|...+++++++||+|++..++.|+ .++..+++++.++|+|||++++..+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 888888888999999999885554 45577999999999999999987543
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.14 E-value=1.8e-12 Score=115.02 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH-HhCCCcccccccc-cccCCCCCccccccccc-c
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGVLGT-KRLPYPSRSFELAHCSR-C 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~~d~-~~lpf~~~sFDlV~~s~-~ 287 (617)
+.+|||||||+|.++..+++. .|+++|+++.+++.++.+... ....++.+...|+ ...... +.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 368999999999999999883 599999999999888855523 2245678888888 333333 5699999987 4
Q ss_pred ccccc--cccceEEEEecccccCCceeeecC
Q 007128 288 RIDWL--QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~--~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.++. ++...+++++.+.|+|||++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33232 233568999999999999999864
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.13 E-value=7.1e-12 Score=123.51 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=76.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..|+++ .|+++|+++.++..++ +.+...++++.+...|....+++ ++||+|+|+.++++...
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCH
Confidence 58999999999999999876 5999999998888776 34555666666667777666665 57999999887544432
Q ss_pred -ccceEEEEecccccCCceeeec
Q 007128 294 -RDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 -~~~~~L~el~RvLrPGG~lvis 315 (617)
+...+++++.|+|+|||++++.
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEE
Confidence 3356899999999999996653
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.12 E-value=8.8e-12 Score=131.26 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhh-HHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQI-QFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~-~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++|||||||+|.++..++.. .|+|+|+++.++..+.. +........+.+..+++..+|.. ++||+|+|..+++|+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhcc
Confidence 68999999999988777664 48999999987754321 11111122455666777888765 489999999886665
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCC-----HHHH-----HHH-----HHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQD-----EEDL-----RIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~-----~~~~-----~~w-----~~l~~l~~~~gf~~v~ 346 (617)
.++..+|++++|+|||||.|++.+....... +... ..| .++...++++||+.+.
T Consensus 202 -~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 202 -KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred -CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 4557899999999999999998643221100 0000 011 6778888999997654
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=7.8e-12 Score=123.44 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=75.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..|+++ .|+++|+|+.++..++. .+...++. +.+.+.|...++++ ++||+|+|+.+++++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLE 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCC
Confidence 58999999999999999876 58999999988887774 34444443 66777787777765 5799999988754332
Q ss_pred c-ccceEEEEecccccCCceeee
Q 007128 293 Q-RDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 293 ~-~~~~~L~el~RvLrPGG~lvi 314 (617)
. +...+++++.++|+|||++++
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 335799999999999999655
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=4.9e-12 Score=127.53 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=81.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeeccc------ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGL------IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl------~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||++||||-+|..+++... -..|+.+| +++||..+.+|-. +--++.-.|.+| || +|||+|.+...+.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehhh
Confidence 3699999999999999998643 45788888 4799999999854 223444456677 55 9999999999888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++. |++.+|.||.|||||||.+++-+...
T Consensus 131 nv~----d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 131 NVT----DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred cCC----CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 776 99999999999999999999888754
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.11 E-value=3.7e-12 Score=120.12 Aligned_cols=100 Identities=22% Similarity=0.381 Sum_probs=81.9
Q ss_pred eEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..|++ ..++|+|+++.++..++. .+.+.+. ++.+.+.|+.+++ ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 6899999999999999883 259999999999888874 4444555 5888999998887 66 79999998877
Q ss_pred ccccccccceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+ ++..+...+++++.++|++||.++++.+.
T Consensus 83 l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 L-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp G-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred h-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 55566567999999999999999998766
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=1.8e-11 Score=118.38 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=82.8
Q ss_pred EEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcc-cccccccccC-CCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAY-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~-~~~~d~~~lp-f~~~sFDlV~~s~~l~h~ 291 (617)
.||+||||||..-.++... .||++|.++.|.+-+....+..+...+. |++++.+++| ++++++|.|+|..++- -
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-S 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-S 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-c
Confidence 5899999999877777632 5999999999988887666666666666 8899999999 8999999999998854 4
Q ss_pred ccccceEEEEecccccCCceeeecC
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
..++.+.|+|+.|+|||||++++..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 4556789999999999999999863
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.08 E-value=2.3e-11 Score=124.64 Aligned_cols=97 Identities=23% Similarity=0.406 Sum_probs=76.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++ ++..++.+..+|+..++ ++++||+|+|+.+ +|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~-----~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR-----SRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----HhCCCCeEEECchhccC-CCCCccEEEEccC-hh
Confidence 468999999999999888764 5899999887665443 33334667777877665 4469999999887 56
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|..+...+++++.++|||||.+++..+.
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 7766678999999999999999997544
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.07 E-value=2.2e-12 Score=113.15 Aligned_cols=92 Identities=29% Similarity=0.499 Sum_probs=70.7
Q ss_pred EEeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 218 VLDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 218 VLDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
|||+|||+|..+..+.+. .++++|+++.++..++. ...+.+.++.+.++|+.++++.+++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~-~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKK-RFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHH-HSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHH-hchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999888877643 58899999988887773 3444567899999999999988899999999665344
Q ss_pred cccc--cceEEEEecccccCCc
Q 007128 291 WLQR--DGILLLELDRLLRPGG 310 (617)
Q Consensus 291 ~~~~--~~~~L~el~RvLrPGG 310 (617)
+..+ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4443 2469999999999998
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.07 E-value=3.1e-11 Score=121.06 Aligned_cols=99 Identities=26% Similarity=0.490 Sum_probs=78.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..+++. .++++|+++.++..+..... .++.+..+|...+++++++||+|+++.+ +||
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-LQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-hhh
Confidence 68999999999998888764 36888888766544432111 2456777888899988899999999887 566
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
..++..++.++.++|+|||.++++.+..
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 6666789999999999999999986544
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.05 E-value=7.3e-11 Score=115.05 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=93.9
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..++|.|+|||+|..+..|+++ .++|+|-|+.|++ .|+++.+++.|..+|+..+. ++..+|+++++.+ +
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla-----~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-l 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLA-----KAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-L 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHH-----HHHHhCCCCceecccHhhcC-CCCccchhhhhhh-h
Confidence 3478999999999999999886 5888888876654 45578889999999988876 4578999997655 8
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
||.++-..+|..+...|.|||.|.+-.|...-...+ ..|.+.+++.-|..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH-----~~mr~~A~~~p~~~ 152 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSH-----RLMRETADEAPFAQ 152 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECCCccCchhH-----HHHHHHHhcCchhh
Confidence 998887889999999999999999987765433332 34666666666644
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=5.1e-11 Score=122.41 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=90.8
Q ss_pred ecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHH
Q 007128 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFA 255 (617)
Q Consensus 179 ~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a 255 (617)
.|+..+.........-.+.+.+.+.+ .+| .+|||||||.|.++.+++++ +|+|+++|++....++ +.+
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L------~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGL------KPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRI 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCC------CCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHH
Confidence 35555545555545555667777776 545 89999999999999999986 5889999887777766 334
Q ss_pred HHhCCC--cccccccccccCCCCCcccccccccccccccc-ccceEEEEecccccCCceeeecC
Q 007128 256 LERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 256 ~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~-~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.|+. +++...|...+ ++.||-|++..++.|+.. ....+++.+.++|+|||.+++-+
T Consensus 116 ~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHcCCCcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 455654 55554444443 355999999888666543 23569999999999999999854
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.02 E-value=2.3e-11 Score=121.83 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+|||||||+|.++..+++. .++++|+++.++..++.+ ..+.++ .+.+...|....|++ ++||+|++..++.|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999988888754 488999988776666533 333333 356677777666665 58999999887655
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCH---HHHH----HHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE---EDLR----IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~---~~~~----~w~~l~~l~~~~gf~~v~ 346 (617)
. .+...+++++.++|+|||++++.++....... .... .-.++.+++++.||+++.
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 4 45578999999999999999997643211000 0000 015677788888886654
No 43
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.02 E-value=4.1e-11 Score=118.76 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=87.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccc-cccC--CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~-~~lp--f~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..|++. .|+++|+++.++..++.+.......++.+.++|+ ..++ +++++||+|++...
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 368999999999998888654 5899999998888777443332223577888888 7776 77889999997654
Q ss_pred ccccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.+|... ...+++++.++|||||+|+++.+... ....+.+.++..||..
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------YAEYMLEVLSAEGGFL 176 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--------HHHHHHHHHHhCcccc
Confidence 233221 13478999999999999999764331 1245666677777743
No 44
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.00 E-value=2.1e-11 Score=125.54 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=71.8
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc---------ccchhhhhhhcccCC-cchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL---------IGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl---------~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|+++ +.. .+|+.+|. ++|++.|.+|.- +..+..-.+.++ ++ ++||+|++.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEEe
Confidence 46999999999999988874 210 15777774 689888866521 111222223344 44 899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+++++. ++..+|.||.|+|||||.++|.|-
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9998776 789999999999999999998864
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.00 E-value=7.5e-11 Score=118.05 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=90.1
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .|+|+|+++.++..++.+.. ..+. ++.+.+.|+..++ ++||+|++..+++|
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 468999999999999999865 58999999988877774433 3333 5677777877765 78999999888766
Q ss_pred ccc-ccceEEEEecccccCCceeeecChhhhcC-CHHHHH--------------HHHHHHHHHHHhhhhhhhcc
Q 007128 291 WLQ-RDGILLLELDRLLRPGGYFAYSSPEAYAQ-DEEDLR--------------IWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 291 ~~~-~~~~~L~el~RvLrPGG~lvis~p~~~~~-~~~~~~--------------~w~~l~~l~~~~gf~~v~~~ 348 (617)
+.. +...++.++.+++++++++.+........ ...... .-+++.++++.+||+++..+
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 643 33568899999999888777753221100 000000 01678888888888776543
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.99 E-value=3.5e-11 Score=124.60 Aligned_cols=124 Identities=19% Similarity=0.358 Sum_probs=80.1
Q ss_pred cCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHH
Q 007128 180 FPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFAL 256 (617)
Q Consensus 180 Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~ 256 (617)
|+.+...+.....+-.+.+.+.+.+ ++| .+|||||||.|.++.+++++ .|+|+++|+.....++ +.+.
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l------~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~ 106 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGL------KPG--DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIR 106 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--------TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCC------CCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHH
Confidence 4444444544444445556666655 444 79999999999999999987 4778877775555544 3344
Q ss_pred HhCCC--cccccccccccCCCCCccccccccccccccc-cccceEEEEecccccCCceeeec
Q 007128 257 ERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 257 ~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~-~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.|+. +.+...|..+++. +||.|++..++.|.. .+...+++++.++|+|||.+++.
T Consensus 107 ~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 107 EAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp CSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred hcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 55654 5666677766654 899999998877763 33357999999999999999975
No 47
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.99 E-value=4.3e-11 Score=117.42 Aligned_cols=161 Identities=23% Similarity=0.308 Sum_probs=106.8
Q ss_pred ccccCchhhHHHHHHhHhcCCCCC-------CCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHH
Q 007128 185 THFHYGADKYIASIANMLNFSNDN-------INNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFA 255 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~-------l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a 255 (617)
+.|++.+..|...+.+.|...... ....+..+++||+|||||.++..|... .++|+|||.+| +..|
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nM-----l~kA 163 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENM-----LAKA 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHH-----HHHH
Confidence 456666666655544333321100 013344789999999999999998765 67888777655 4566
Q ss_pred HHhCCCcccccccccc-cC-CCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCC---HHHHHHH
Q 007128 256 LERGIPAYLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD---EEDLRIW 330 (617)
Q Consensus 256 ~~rg~~~~~~~~d~~~-lp-f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~---~~~~~~w 330 (617)
.++++.-.+.+++... ++ ..++.||+|++..+ +.+....+.++.-+...|+|||.|.+|+-...... -.....|
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 6788766666666543 22 45678999999887 45677777899999999999999999853221110 0001112
Q ss_pred ----HHHHHHHHHhhhhhhhccCce
Q 007128 331 ----KEMSALVERMCWRIAAKRNQT 351 (617)
Q Consensus 331 ----~~l~~l~~~~gf~~v~~~~~~ 351 (617)
..+..+++..||+++..+..+
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeeccc
Confidence 557888999999887765433
No 48
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.98 E-value=4.3e-11 Score=126.54 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=73.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----c---ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----L---IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.|.++. + +..++.-.+.++..+++||+|.|..++.|
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999998776 5777774 68888776552 1 11222222444433489999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. ++..+|.|+.|+|||||.++|...
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 87 789999999999999999998853
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.98 E-value=6.9e-11 Score=115.76 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=87.2
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++. .+.+.++ ++.+..+|+..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 36899999999998887764 269999999998888874 4444555 47788888888776 679999997632
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.+...++.++.++|||||++++..+... -..+..+.+.+||.+.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEe
Confidence 2335688999999999999998743321 1457778888898654
No 50
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.97 E-value=4.7e-11 Score=119.71 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=74.7
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-------CcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-------PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-------~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+++|||+|||+|.++..|++. .|+|+|++..++..|+.. +...-+ ...+.+.+.+.+. +.||+|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 367999999999999999986 699999999988888754 321111 1223334444432 459999999
Q ss_pred ccccccccccceEEEEecccccCCceeeecChhh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+++|. .++..++..+.+.|||||.+++++-+.
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 996655 555789999999999999999986443
No 51
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.97 E-value=8.5e-12 Score=117.33 Aligned_cols=96 Identities=23% Similarity=0.393 Sum_probs=69.9
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
.-.+|||+|||+|.++..|++.+. .++.+|. +.+++. +......++-. .....+++||+|+|..+|+|+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~-~~~~~~~~fD~i~~~~~l~~~~-- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQ-DPPFPDGSFDLIICNDVLEHLP-- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECH-THHCHSSSEEEEEEESSGGGSS--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhh-hhhccccchhhHhhHHHHhhcc--
Confidence 344799999999999999999888 4555553 344332 22212212111 1111239999999999999987
Q ss_pred CCCcccchhhccccccCcceEEEecChh
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..+|.+|.|+|||||+++|.++..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 78999999999999999999999863
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.97 E-value=5e-11 Score=124.50 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=77.0
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~- 292 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++ +.+.+.++++.+...|....++ +++||+|++..++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 48999999999999999875 5999999998888766 4556667777777777766655 57899999887754432
Q ss_pred cccceEEEEecccccCCceeeec
Q 007128 293 QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis 315 (617)
++...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13356899999999999997664
No 53
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.96 E-value=1.2e-11 Score=125.20 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc------ccchhh
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL------IGSIHN 509 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl------~~~~~~ 509 (617)
..|++.+... +. ...+ ..|||++||+|-++..|+++-..-..|+.+|. ++||+++.+|.- |-.+..
T Consensus 33 ~~wr~~~~~~---~~--~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKL---LG--LRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHH---HT----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhc---cC--CCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 6677755442 22 2222 27999999999999999875322236777774 799999988732 222222
Q ss_pred hhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 510 WCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 510 ~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
-.+.+| || ++||.|.+...+..+. |+..+|.||.|||||||.++|-|...
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~~----d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNFP----DRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S----SHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhhC----CHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 234455 44 9999999988888665 88999999999999999999887654
No 54
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.96 E-value=1.3e-10 Score=118.77 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=73.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
...+|||+|||+|.++..|++.+. .|+.+|. +.|++.+.++.. ...+..-.+.++..+++||+|.++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcC-
Confidence 455799999999999999988765 5666674 688877776642 1111111133332238999999998888655
Q ss_pred cCCCcccchhhccccccCcceEEEecCh
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++..+|.|+.|+|||||.+++....
T Consensus 118 ---d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 ---NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7889999999999999999998543
No 55
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.95 E-value=6.8e-11 Score=122.02 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=75.8
Q ss_pred ceeEEEeecccccc----ccccccc---------chhhhhccCCCccchhhhHHH---HHhC------------------
Q 007128 214 RLRTVLDVGCGVAS----FGAYLLS---------SDVITMSLAPNDVHQNQIQFA---LERG------------------ 259 (617)
Q Consensus 214 ~~~~VLDVGCG~G~----~~~~L~~---------~~V~gvDis~~dl~~a~~~~a---~~rg------------------ 259 (617)
+..+|||+|||+|. ++..|++ ..|+|+|+++.+++.|+...- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34789999999994 4444432 258999999988877764210 0001
Q ss_pred ------CCcccccccccccCCCCCccccccccccccccccc-cceEEEEecccccCCceeeecC
Q 007128 260 ------IPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 260 ------~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
-.+.|.+.|....++++++||+|+|.++++++..+ ...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13677788888888878899999999987766432 2469999999999999999963
No 56
>PRK06922 hypothetical protein; Provisional
Probab=98.94 E-value=6.6e-11 Score=133.17 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=79.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--CCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--YPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--f~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..+++. .++|+|+++.++..++.+ +...+.++.+.++|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 68999999999988777643 699999999888877643 2333456667778888887 7889999999887765
Q ss_pred cccc------------ccceEEEEecccccCCceeeecCh
Q 007128 290 DWLQ------------RDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~------------~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++.. +...+|+++.|+|||||++++.+.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5431 234689999999999999999754
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.92 E-value=3.8e-10 Score=110.86 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=121.0
Q ss_pred hhhhhhhHHHHHHHHH---HHH--Hhhccc---cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe
Q 007128 429 SEMFEKDTESWRNRVD---SYW--NLLSPK---IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY 499 (617)
Q Consensus 429 ~e~F~~D~~~Wk~~V~---~y~--~~l~~~---i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~ 499 (617)
+..|..-++.+...+- .|. .+|.++ .+.+..+.+||+|||||-++.+|.+..- -++.+|. .|||..|.
T Consensus 88 e~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 88 ETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAH 164 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHH
Confidence 3456666777765442 343 223332 4557799999999999999999988533 5778885 79999999
Q ss_pred eccccc-chhhhhhhcc--cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------
Q 007128 500 DRGLIG-SIHNWCEAYS--TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------ 564 (617)
Q Consensus 500 ~rgl~~-~~~~~~e~~~--~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------ 564 (617)
+||+.- .+|.=...|. .-++.||||.+..||+++- +++.++.=..+.|.|||.|+++...-
T Consensus 165 eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG----~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~ 240 (287)
T COG4976 165 EKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG----ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ 240 (287)
T ss_pred hccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc----chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh
Confidence 999843 2332223344 2349999999999999998 89999999999999999999986543
Q ss_pred ----HHHHHHHhhhhcccccccccccCC--CCCCCCCCeEEEEEEec
Q 007128 565 ----VVDFVKKYLRALNWEAVATTADAS--SDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 565 ----~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~l~~~K~ 605 (617)
.-..|+..+.+-+.++| .+.++- .+.+..-+..+.|++|+
T Consensus 241 RyAH~~~YVr~~l~~~Gl~~i-~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 241 RYAHSESYVRALLAASGLEVI-AIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hhccchHHHHHHHHhcCceEE-EeecccchhhcCCCCCCceEEEecC
Confidence 23458899999999987 554321 12233345667778775
No 58
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.92 E-value=1.6e-10 Score=116.37 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=89.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.-.-..+|+.+|. +++++.+.++ ++ +..++.-.+.++ ++ ++||+|++..++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecccc
Confidence 46999999999999999864100114555563 5666555443 22 111221112222 34 8999999988888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh-------------------------------------------HHHH
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------------------------------------VVDF 568 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------------------------------------~~~~ 568 (617)
++. +...+|.|+.|+|||||++++.+... ..++
T Consensus 126 ~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 126 NVP----DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cCC----CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 665 67889999999999999999876421 1256
Q ss_pred HHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 569 VKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 569 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++++++.+++.+ ++.. ...+...+.+++|
T Consensus 202 l~~~l~~aGf~~~-~~~~-----~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDV-EVKS-----YTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCee-EEEE-----cccceEEEEEEEC
Confidence 7888889898875 4443 2245667777776
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.92 E-value=1.5e-10 Score=113.25 Aligned_cols=97 Identities=24% Similarity=0.450 Sum_probs=76.2
Q ss_pred eEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.++||+|||.|..+.+|++++ |+++|+++..++..+ +.|.+.++++...+.|.....++ +.||+|++..++ ++..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~-~fL~ 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVF-MFLQ 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSG-GGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEe-ccCC
Confidence 489999999999999999984 999999998887765 67888889988888998888776 689999976554 4444
Q ss_pred cc--ceEEEEecccccCCceeeec
Q 007128 294 RD--GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 ~~--~~~L~el~RvLrPGG~lvis 315 (617)
.. ..++..+...++|||++++.
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 32 34788999999999999985
No 60
>PRK06202 hypothetical protein; Provisional
Probab=98.91 E-value=3.7e-10 Score=114.09 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=69.1
Q ss_pred eeEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
..+|||||||+|.++..|++ ..|+|+|+++.++..++.+. ... ++.+.+.+...+++++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~--~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRP--GVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccC--CCeEEEEecccccccCCCccEEEECC
Confidence 46899999999998887764 15899999998877665322 122 34455556667777788999999999
Q ss_pred cccccccc-cceEEEEecccccCCceeeec
Q 007128 287 CRIDWLQR-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 287 ~l~h~~~~-~~~~L~el~RvLrPGG~lvis 315 (617)
+++|..++ ...+++++.|+++ |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 86555433 2359999999998 444443
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.91 E-value=6.1e-10 Score=109.12 Aligned_cols=152 Identities=18% Similarity=0.289 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcC--CceEEEEeecCCC-CCceEEEeec----cc--ccch
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSI 507 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~ 507 (617)
+.|++++-+-..+. ..+.. -.+|||+|||+|.++..++. .+. .|+.+|. +.|++.|.++ |+ +-.+
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~~---~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPEL---KVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 47887775433222 22332 24699999999999988874 334 5666664 5666555432 33 2223
Q ss_pred hhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccC
Q 007128 508 HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 508 ~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
+.-.+.+.. +++||+|.++.. .+++.++.++.|+|||||.+++-+......++..++..++|...+.++-
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 170 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL- 170 (187)
T ss_pred eccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE-
Confidence 332333333 479999998542 2567899999999999999999999999999999999999997533332
Q ss_pred CCCCCCCCCeEEEEEEec
Q 007128 588 SSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~ 605 (617)
+. ++-.++.-+.|.+|+
T Consensus 171 ~~-~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 171 TL-PGLDGERHLVIIRKK 187 (187)
T ss_pred ec-CCCCCcEEEEEEecC
Confidence 12 233455667777774
No 62
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.90 E-value=1.4e-10 Score=118.97 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=72.9
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.-..|||+|||+|.++..|+++ +. .|+.+|. +.|++.|.++++--...+. +.++ .+++||+|+++.+|+|+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC
Confidence 3357999999999999999886 34 5667774 6888888887751111121 2222 238999999999999886
Q ss_pred hcCCCcccchhhccccccCcceEEEec
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++..+|.++.|+|||||+++|..
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEEc
Confidence 77899999999999999999964
No 63
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.90 E-value=4.9e-10 Score=111.35 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ...++.+..+|+..+++++++||+|+++.++
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~- 116 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL- 116 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee-
Confidence 468999999999998887654 47788887765554442222 1234667778888888888899999988774
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|+..+...+++++.++|+|||++++..
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 445555779999999999999999854
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.89 E-value=8.5e-11 Score=116.05 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=77.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++++. +|+.+|. +.+++.+.++ |+ ..++.-+.++.. ++.+||+|.|..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 4699999999999999999876 5666674 5666554432 33 112222223322 3578999999999876
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
+. ..+...++.+|.|+|||||++++-...+ ..+++.+.+. .|+.+
T Consensus 108 ~~--~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~ 166 (197)
T PRK11207 108 LE--AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMV 166 (197)
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEE
Confidence 54 2256789999999999999965532211 2345777776 67764
No 65
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.89 E-value=2.5e-10 Score=117.14 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=71.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cccc---chhhhhhhcccC-Ccchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIG---SIHNWCEAYSTY-PRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~---~~~~~~e~~~~~-p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++.+. +|+.+|. ++|++.|.++ |+.. .++.-.+.+..+ +++||+|.|+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999999876 5667774 6787777654 3321 122111223323 4899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|+. ++..+|.++.|+|||||.++|..
T Consensus 123 ~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVA----DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9886 67899999999999999998764
No 66
>PLN02244 tocopherol O-methyltransferase
Probab=98.88 E-value=1.3e-10 Score=124.29 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhh---hhhcccCC-cchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNW---CEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~---~e~~~~~p-~tfDlvh~~~ 528 (617)
-.+|||+|||+|+++..|+++ +. +|+.+|. +.|++.+.++ |+...+... .+.++ ++ ++||+|++..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECC
Confidence 346999999999999999985 55 4555553 4565544332 431111111 12222 33 8999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.|+. +...+|.||.|+|||||.|+|.+
T Consensus 195 ~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 998876 77899999999999999999865
No 67
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.87 E-value=1.6e-10 Score=119.19 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=67.8
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccc-cchhhhhhhcc--cCC-cchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLI-GSIHNWCEAYS--TYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~-~~~~~~~e~~~--~~p-~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|+++..|++. ++ .|+.+|. +++++.+.++..- ..+...+.++. .|| ++||+|++..++.|+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 35999999999999999764 44 4666663 5676666554210 01111112211 244 899999998888765
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. ..+...+|.|+.|+|||||+|+|.|.
T Consensus 131 ~--~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 131 S--YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred C--HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 12678899999999999999999875
No 68
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.87 E-value=4e-10 Score=109.86 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=71.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..++.. .|+++|+++.+++.++ +.+.+.++ ++.+..+|+..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 368999999999988877642 5999999998887666 34444454 4778888888765 357999998753 2
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.. ..+++.+.++|+|||.+++..
T Consensus 119 ~~~---~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASL---NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCH---HHHHHHHHHhcCCCCEEEEEc
Confidence 222 346778899999999999863
No 69
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.86 E-value=1.8e-10 Score=114.21 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=85.7
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCc
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPA 262 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~ 262 (617)
..|...++.|.-...+.+... ..+ .+.++|||||+|..+.-+++. +|+|+|+++.|+. .+.+. .++
T Consensus 10 ~~Y~~ARP~YPtdw~~~ia~~-----~~~-h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~-----~a~k~-~~~ 77 (261)
T KOG3010|consen 10 ADYLNARPSYPTDWFKKIASR-----TEG-HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLK-----VAKKH-PPV 77 (261)
T ss_pred HHHhhcCCCCcHHHHHHHHhh-----CCC-cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHH-----HhhcC-CCc
Confidence 445555666654444444330 223 348999999999777777765 7999988876654 44333 222
Q ss_pred ccc-----cccccccCCC--CCccccccccccccccccccceEEEEecccccCCc-eeeecChhhhcCCHHHHHHHHHHH
Q 007128 263 YLG-----VLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFAYSSPEAYAQDEEDLRIWKEMS 334 (617)
Q Consensus 263 ~~~-----~~d~~~lpf~--~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG-~lvis~p~~~~~~~~~~~~w~~l~ 334 (617)
.+. ..+.+..++. ++|.|+|+|.+| +||.+. +++.+++.|+||+.| .+++=..+.. .-.|.+..
T Consensus 78 ~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWFdl-e~fy~~~~rvLRk~Gg~iavW~Y~dd------~v~~pE~d 149 (261)
T KOG3010|consen 78 TYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWFDL-ERFYKEAYRVLRKDGGLIAVWNYNDD------FVDWPEFD 149 (261)
T ss_pred ccccCCccccccccccccCCCcceeeehhhhh-HHhhch-HHHHHHHHHHcCCCCCEEEEEEccCC------CcCCHHHH
Confidence 221 2222333443 899999999999 789876 789999999999877 5544111111 11144555
Q ss_pred HHHHHhhhh
Q 007128 335 ALVERMCWR 343 (617)
Q Consensus 335 ~l~~~~gf~ 343 (617)
.++.+.+++
T Consensus 150 sv~~r~~~~ 158 (261)
T KOG3010|consen 150 SVMLRLYDS 158 (261)
T ss_pred HHHHHHhhc
Confidence 566666653
No 70
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.86 E-value=1.8e-10 Score=121.40 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=90.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe--ec--ccccchhhh---hhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY--DR--GLIGSIHNW---CEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~--~r--gl~~~~~~~---~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+.|||+|||+|.++..|+..+.. .|+.+|. +.|+..+. .+ +....++-. .+.++. +.+||+|.|.+++.
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 57999999999999999887652 3455552 34432210 01 000111111 123332 36899999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh------------h------------HHHHHHHhhhhcccccccccccC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------S------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------~------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|+. ++.++|.|+.|+|||||.|++.+.. . ...+++.++++.+++.+ ++++
T Consensus 200 H~~----dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V-~i~~- 273 (314)
T TIGR00452 200 HRK----SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF-RILD- 273 (314)
T ss_pred ccC----CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE-EEEe-
Confidence 775 8899999999999999999986321 0 24568888999999987 5554
Q ss_pred CCCCCCCCCeEEEEEEecccccCCCCCC
Q 007128 588 SSDSDKDGDEVVFIVQKKIWLTSESLRD 615 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~~w~~~~~~~~ 615 (617)
...- ... =-+|+=|-..+|+.+
T Consensus 274 -~~~t-t~~----eqr~t~w~~~~sl~~ 295 (314)
T TIGR00452 274 -VLKT-TPE----EQRKTDWILGESLED 295 (314)
T ss_pred -ccCC-CHH----HhhhhhhhhccchHh
Confidence 1111 111 235777877776653
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.85 E-value=3.3e-10 Score=111.52 Aligned_cols=101 Identities=16% Similarity=0.264 Sum_probs=75.7
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC---CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
.+|||||||+|.++..++.+ .++|+|+++.++..+..+. .+.++ ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 58999999999999888865 5899999998887776433 33343 5778888887654 55679999987654
Q ss_pred cccccccc--------ceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQRD--------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~~~--------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+|.... ..+++++.|+|||||.|++.+..
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3443321 24788999999999999997543
No 72
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.85 E-value=8.2e-10 Score=110.94 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=76.9
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||+|||+|.++..++. ..++++|+++.++..++.+..... ..++.+...|...+++++++||+|+++.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 36899999999998877764 358899998877776664332211 234667778888888877899999998875
Q ss_pred cccccccceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|+..+...++.++.++|+|||++++..
T Consensus 132 -~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 -RNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred -ccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 444555778999999999999998753
No 73
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.84 E-value=4e-10 Score=118.89 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=65.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHH-----hCCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALE-----RGIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~-----rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++.+.... ....+.+...|...+ +++||+|+|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 368999999999999999876 5899999999998877443321 022345666665443 578999999998
Q ss_pred cccccccc-ceEEEEecccccCCceeee
Q 007128 288 RIDWLQRD-GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 288 l~h~~~~~-~~~L~el~RvLrPGG~lvi 314 (617)
++|+.++. ..+++.+.+ +.+||.++.
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 87765542 224455554 456655443
No 74
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.84 E-value=4e-10 Score=112.67 Aligned_cols=101 Identities=18% Similarity=0.025 Sum_probs=74.7
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH------------HhCCCcccccccccccCCC-CCccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL------------ERGIPAYLGVLGTKRLPYP-SRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~------------~rg~~~~~~~~d~~~lpf~-~~sFD 280 (617)
.+|||+|||.|..+..|+++ .|+|+|+|+..++.++.+... .++..+.+.++|+..++.. .+.||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 58999999999999999987 599999999877754321110 1234567788888877643 35799
Q ss_pred ccccccccccccccc-ceEEEEecccccCCceeeecC
Q 007128 281 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 281 lV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~ 316 (617)
.|+-..+++|...+. ..++..+.++|||||++++.+
T Consensus 116 ~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 116 AVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 998776666654432 458999999999999866653
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.84 E-value=1.9e-10 Score=122.90 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=74.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++++ .|+++|+++.++..++. .....++...+...|... ..++.||+|+|+..++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~-nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA-TLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 37999999999999888764 58999999988888774 344455665555555433 235789999998764321
Q ss_pred c----cccceEEEEecccccCCceeeecChhhh
Q 007128 292 L----QRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 292 ~----~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
. .....++.++.+.|+|||.|+++.....
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 1 1224689999999999999999865543
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.84 E-value=3.5e-10 Score=109.66 Aligned_cols=94 Identities=28% Similarity=0.448 Sum_probs=68.7
Q ss_pred eEEEeecccccccccccccc-h--hhhhccCCCccchhhhHHHHHhCCCccccccccccc-CCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-D--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-PYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-pf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||.|.+..+|.+. + ..|+|+++ +.+..+.++|+++.-..++. .| .|++++||.|++++++-+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~- 87 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQA- 87 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHh-
Confidence 68999999999999999874 3 45565544 55667778898854443332 34 499999999999998554
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...+..+|.|+.|+ |...+++-|+.
T Consensus 88 ~~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 88 VRRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HhHHHHHHHHHHHh---cCeEEEEecCh
Confidence 44557788888666 56777776665
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.83 E-value=8.6e-10 Score=116.13 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=73.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++ +.+.+.++ .+.+..+|+...++++ +|+|++++++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 368999999999999888875 4778887 44555544 34444444 3667778877666653 7999988887
Q ss_pred ccccccc-ceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
++|.++. ..+|++++++|+|||++++.+.
T Consensus 226 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6665442 4689999999999999999753
No 78
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.83 E-value=6.4e-10 Score=117.99 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=89.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE--eeccc-----ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI--YDRGL-----IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~--~~rgl-----~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+.|||+|||+|.++..|++.+.. .|+.+|. +.++..+ ..+.. +-.+..-.+.++. +++||+|+|..++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 57999999999999999987642 2445552 3333211 01100 1111111133443 68999999999998
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh------------h------------HHHHHHHhhhhcccccccccccC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------S------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------~------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|.. ++..+|.++.|+|||||.+++.+-. . ..+++..++.+.+++.+ ++.+.
T Consensus 201 H~~----dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i-~~~~~ 275 (322)
T PRK15068 201 HRR----SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV-RIVDV 275 (322)
T ss_pred ccC----CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE-EEEeC
Confidence 765 7889999999999999999986311 0 23568889999999987 66552
Q ss_pred CCCCCCCCCeEEEEEEecccccCCCCC
Q 007128 588 SSDSDKDGDEVVFIVQKKIWLTSESLR 614 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~~w~~~~~~~ 614 (617)
...+.+ --+|+-|-..+|+.
T Consensus 276 --~~t~~~-----eqr~t~w~~~~sl~ 295 (322)
T PRK15068 276 --SVTTTE-----EQRKTEWMTTESLA 295 (322)
T ss_pred --CCCCcc-----ccccccCcccCcHh
Confidence 211111 12367776655543
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.82 E-value=1.3e-09 Score=114.04 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred CccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC
Q 007128 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI 260 (617)
Q Consensus 184 ~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~ 260 (617)
+..|..+.........+++.. +.. ++.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~----~~~--~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~ 207 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLED----LDL--KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQV 207 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHh----hcC--CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCC
Confidence 445655555444444455443 112 2368999999999888777654 58999999988887774 3444444
Q ss_pred Ccc--cccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHH
Q 007128 261 PAY--LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVE 338 (617)
Q Consensus 261 ~~~--~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~ 338 (617)
... +...+ ..++.+++||+|+++.. .+. ...++.++.++|||||+++++..... ...++.+.++
T Consensus 208 ~~~~~~~~~~--~~~~~~~~fDlVvan~~-~~~---l~~ll~~~~~~LkpgG~li~sgi~~~--------~~~~v~~~~~ 273 (288)
T TIGR00406 208 SDRLQVKLIY--LEQPIEGKADVIVANIL-AEV---IKELYPQFSRLVKPGGWLILSGILET--------QAQSVCDAYE 273 (288)
T ss_pred CcceEEEecc--cccccCCCceEEEEecC-HHH---HHHHHHHHHHHcCCCcEEEEEeCcHh--------HHHHHHHHHH
Confidence 322 22222 23445678999998643 222 23578899999999999999865321 1245555555
Q ss_pred Hhhhhhh
Q 007128 339 RMCWRIA 345 (617)
Q Consensus 339 ~~gf~~v 345 (617)
+. |+.+
T Consensus 274 ~~-f~~~ 279 (288)
T TIGR00406 274 QG-FTVV 279 (288)
T ss_pred cc-Ccee
Confidence 54 6554
No 80
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.82 E-value=4.2e-10 Score=109.34 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 212 EGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 212 ~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.....++||+|||.|.++..|+.+ .++++|+++..++.++.+.+.. .++.+.++++... .|+++||+|+++.+++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 345688999999999999999987 6999999987776666444332 3577787777554 4678999999998855
Q ss_pred cccc--ccceEEEEecccccCCceeeecC
Q 007128 290 DWLQ--RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~--~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+.+ +...++..+...|+|||.+++.+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4432 23458899999999999999964
No 81
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.82 E-value=4.3e-09 Score=102.98 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=90.5
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc-ccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRL 272 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~-~~l 272 (617)
+...++|.+ +.+...-|||||||+|..+..|.+. .++|+|+|+.|++.|+.+ .+...+..+|. +-+
T Consensus 38 eRaLELLal------p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-----e~egdlil~DMG~Gl 106 (270)
T KOG1541|consen 38 ERALELLAL------PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-----ELEGDLILCDMGEGL 106 (270)
T ss_pred HHHHHHhhC------CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-----hhhcCeeeeecCCCC
Confidence 334455555 4445678999999999999999875 478999999998877742 22223333442 779
Q ss_pred CCCCCcccccccccccccccccc-----------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 273 PYPSRSFELAHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 273 pf~~~sFDlV~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
||..++||.|++..+ ++|.-+. ..++..++.+|++|+..++.. |+..+... +.+.+.+..+|
T Consensus 107 pfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf---Ypen~~q~---d~i~~~a~~aG 179 (270)
T KOG1541|consen 107 PFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF---YPENEAQI---DMIMQQAMKAG 179 (270)
T ss_pred CCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe---cccchHHH---HHHHHHHHhhc
Confidence 999999999997644 5774332 126888999999999999853 33333322 55666677777
Q ss_pred hh
Q 007128 342 WR 343 (617)
Q Consensus 342 f~ 343 (617)
|.
T Consensus 180 F~ 181 (270)
T KOG1541|consen 180 FG 181 (270)
T ss_pred cC
Confidence 73
No 82
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.81 E-value=1.8e-10 Score=100.40 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeeccc-cc-----chhhhhhhc-ccCC-cchhhhhhhhhhhhh
Q 007128 463 MDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGL-IG-----SIHNWCEAY-STYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl-~~-----~~~~~~e~~-~~~p-~tfDlvh~~~~~~~~ 533 (617)
||+|||+|.++..|++.- ....++.+| ++.|++.+.+|-- .+ .+..-..+. ...+ ++||+|.+..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998872 223667777 4788877766632 11 111111222 2222 599999999999999
Q ss_pred hhcCCCcccchhhccccccCcceE
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ 557 (617)
. ++..+|..+.++|||||.+
T Consensus 80 ~----~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E----DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-----HHHHHHHHTTT-TSS-EE
T ss_pred h----hHHHHHHHHHHHcCCCCCC
Confidence 5 8899999999999999986
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.80 E-value=2.4e-09 Score=106.32 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=68.1
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+. ...+. ++.+..+|........++||+|++..+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 68999999999988777642 5899999998877666333 33443 2667777876654456799999987664
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+. ..++.++|+|||++++.
T Consensus 153 ~~~-------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI-------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh-------hHHHHHhcCcCcEEEEE
Confidence 332 24688999999999884
No 84
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.79 E-value=1.3e-09 Score=97.94 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=69.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..+++. .|+++|+++.+++.++.........++.+...|... ++...++||+|++..+..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh
Confidence 58999999999999888764 589999999888777643333222245565566543 3333468999998654221
Q ss_pred cccccceEEEEecccccCCceeeecC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
...+++++.++|+|||++++..
T Consensus 101 ----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 101 ----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----HHHHHHHHHHHcCCCCEEEEEe
Confidence 2368999999999999999863
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.79 E-value=6.7e-10 Score=120.50 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=71.3
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..+++. .|+++|+|+.++..++.+. .++.+.+...|...+ +++||+|++..++.|.
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 368999999999999988764 5888998887766655322 234455666666554 4689999988775554
Q ss_pred cc-ccceEEEEecccccCCceeeecC
Q 007128 292 LQ-RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~-~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.. +...+++++.++|||||++++..
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 22 23568999999999999999964
No 86
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1e-09 Score=113.75 Aligned_cols=144 Identities=20% Similarity=0.247 Sum_probs=94.3
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP 261 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~ 261 (617)
..|..|...-.....+.|.. ...++++|||+|||+|.++...++. .++|+|+++..+..++ ..++.++++
T Consensus 139 lAFGTG~HpTT~lcL~~Le~------~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~ 211 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEK------LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVE 211 (300)
T ss_pred cccCCCCChhHHHHHHHHHH------hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCc
Confidence 34655554444455555544 2224579999999999887776654 4899999998888877 466666766
Q ss_pred cccccccccccCCCC-CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 262 AYLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 262 ~~~~~~d~~~lpf~~-~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
......-...+..+. +.||+|+++-. - +....+..++.+.|||||++++|+.-.. .-+.+.+.+.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~DvIVANIL-A---~vl~~La~~~~~~lkpgg~lIlSGIl~~--------q~~~V~~a~~~~ 279 (300)
T COG2264 212 LLVQAKGFLLLEVPENGPFDVIVANIL-A---EVLVELAPDIKRLLKPGGRLILSGILED--------QAESVAEAYEQA 279 (300)
T ss_pred hhhhcccccchhhcccCcccEEEehhh-H---HHHHHHHHHHHHHcCCCceEEEEeehHh--------HHHHHHHHHHhC
Confidence 311111122223333 59999998742 2 2224578889999999999999973321 125567777788
Q ss_pred hhhhhhc
Q 007128 341 CWRIAAK 347 (617)
Q Consensus 341 gf~~v~~ 347 (617)
||+++..
T Consensus 280 gf~v~~~ 286 (300)
T COG2264 280 GFEVVEV 286 (300)
T ss_pred CCeEeEE
Confidence 9976653
No 87
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.79 E-value=8.9e-10 Score=106.88 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=84.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++.+. ...+..+.+..+|....+ .++||+|+++...++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 57999999999999888876 4899999998887776443 344556666777765543 358999998865443322
Q ss_pred c--------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 294 R--------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 294 ~--------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
. ...++.++.|+|+|||.+++..+.... -.++...+++.||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--------~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--------EPDTFDKLDERGFRYE 161 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--------hHHHHHHHHhCCCeEE
Confidence 1 123688999999999999987533211 1456677788888543
No 88
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.78 E-value=1.7e-09 Score=111.55 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=86.7
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh-CCC--cccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER-GIP--AYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r-g~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+++|||||||.|.++-.|+.+ .|+|+|.++... .|.+++++- +.. +.+.-..++.+|. .++||+|+|..++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 369999999999999998876 388888776543 332333222 222 2233346788887 6899999999887
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhc-----CCHH-----HHHHH-----HHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEE-----DLRIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~-----~~~~w-----~~l~~l~~~~gf~~v~ 346 (617)
.|..++ -..|.++...|+|||.+++-+..... ..+. -...| ..+...++++||+.+.
T Consensus 193 YHrr~P-l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 193 YHRRSP-LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hccCCH-HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 775554 67999999999999999974321100 0000 00112 6788999999997553
No 89
>PRK04266 fibrillarin; Provisional
Probab=98.77 E-value=1.7e-09 Score=109.13 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=82.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc----cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR----LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~----lpf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+++|+++.|++... +.++++ .++.+..+|+.. .++. ++||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 368999999999999988875 4999999998887655 344433 345566666653 1223 5699998542
Q ss_pred cccccccccceEEEEecccccCCceeeecChhh--hcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA--YAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
. . ......++.++.|+|||||+++++.+.. .+..+. .+.+++..+.++.+||+.+..
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHcCCeEEEE
Confidence 2 1 1111246899999999999999953321 111111 233455668888899976643
No 90
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.77 E-value=1.4e-09 Score=108.04 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=70.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..|++. .++|+|+++.++..++ ++...+.+.++|+.. |+++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~-----~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK-----AYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH-----hhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 57999999999998888654 4888988887665554 332345566777777 8889999999999887776
Q ss_pred ccc-cceEEEEecccccCCceeeecC
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
.++ ...+++++.|++ ++++++..
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 422 356889999998 46777754
No 91
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.75 E-value=8e-10 Score=110.69 Aligned_cols=114 Identities=24% Similarity=0.368 Sum_probs=79.7
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcc--cCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYS--TYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~--~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||+|+++..+++. ++ +|+.+|. +++++.+.++ |+-..+.....++. .++.+||+|++..+|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence 5899999999999999865 34 3444443 4555555443 33221121112221 2358999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~ 581 (617)
|+. ++..++.++.|+|||||++++.+... ...++.+++.+.+++.+
T Consensus 79 ~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 79 HIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred hCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 876 67899999999999999999987531 24567778888888875
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=4.2e-09 Score=105.23 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-Ccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLG 265 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~ 265 (617)
+.....+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.... ..+. ++.+.
T Consensus 62 p~~~~~~~~~l~~------~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~ 132 (212)
T PRK13942 62 IHMVAIMCELLDL------KE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVI 132 (212)
T ss_pred HHHHHHHHHHcCC------CC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEE
Confidence 3444555566554 33 368999999999998777643 58999999988777764433 3344 47788
Q ss_pred cccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 266 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 266 ~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+|......+.+.||+|++.....+ ....+.+.|||||++++.
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEE
Confidence 8887766666789999997654322 334678899999999984
No 93
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.75 E-value=1e-09 Score=104.74 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=61.7
Q ss_pred hhhccCCCccchhhhHHHHHh---CCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeee
Q 007128 238 ITMSLAPNDVHQNQIQFALER---GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 238 ~gvDis~~dl~~a~~~~a~~r---g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvi 314 (617)
+|+|+|+.|+..++.+..... ..++.+.++|+.++|+++++||+|+++.++ |+..+...+|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 478999999888764332211 225788899999999999999999999875 4445667899999999999999987
Q ss_pred cC
Q 007128 315 SS 316 (617)
Q Consensus 315 s~ 316 (617)
.+
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 64
No 94
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.74 E-value=2e-09 Score=108.51 Aligned_cols=101 Identities=20% Similarity=0.357 Sum_probs=74.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-CCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-YPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..+.+. .++++|+++..+..++... ...+..+.+...+...++ ..+++||+|+++.++.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 368999999999998888765 4888999887766555332 223445556666666554 345789999998875544
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+...+|+++.++|+|||+++++.+
T Consensus 128 -~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 -PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4446789999999999999998754
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.74 E-value=1.3e-09 Score=108.98 Aligned_cols=101 Identities=19% Similarity=0.350 Sum_probs=75.8
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC-CCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP-SRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..++ ++.+...+...++.. .++||+|++..++ +
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l-~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL-E 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH-H
Confidence 468999999999988877654 48888988877766653332 3344 466666777666654 3789999998774 4
Q ss_pred cccccceEEEEecccccCCceeeecCh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+..++..++.++.++|+|||.++++..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 555557799999999999999998754
No 96
>PRK05785 hypothetical protein; Provisional
Probab=98.74 E-value=1.3e-09 Score=109.89 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=70.7
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|.++..|++. +. +|+.+|. ++|++.+.++.- .++...+.++.-+++||+|.+..++.|+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--- 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALHASD--- 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhhccC---
Confidence 47999999999999999987 44 6788884 799998877642 22333345542239999999999888665
Q ss_pred CCcccchhhccccccCcc-eEEEecC
Q 007128 538 CSGEDLLLEMDRILRPTG-FVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG-~~ii~~~ 562 (617)
+++.+|.||.|+|||.+ .+.+..+
T Consensus 125 -d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred -CHHHHHHHHHHHhcCceEEEEeCCC
Confidence 88999999999999954 3444433
No 97
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=1.7e-09 Score=110.92 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=76.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..-.+|||+|||+|.++..|++. +. +|+.+|. +.|++.+.++.- +..+..-.+.+. .+++||+|+++.+|++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhh
Confidence 44467999999999999999875 33 4666664 567766655421 111111011111 2379999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh----HHHHHHHhhhhccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~~~~w~~ 580 (617)
+. +...+|.+|.|+|||||.+++..+.. ....++++.....|..
T Consensus 106 ~~----d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 106 LP----DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred CC----CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 76 67899999999999999999964321 1122444544445543
No 98
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.1e-09 Score=106.03 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhcccc----CccchhhHHHhhhcchhhHhhhc-CCceEEEEeecCCCCCceEEEeecc-----c-cc
Q 007128 437 ESWRNRVDSYWNLLSPKI----QSNSLRNLMDMKAHLGSFAAALK-EKDVWVMSVVPEDGPNTLKLIYDRG-----L-IG 505 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i----~~~~~r~vLD~g~G~G~fa~~L~-~~~~~v~~v~~~~~~~~l~~~~~rg-----l-~~ 505 (617)
..+.+.++.|++.|-..+ ..+.=--||.+|||+|.---++- ..+..|.-+.| +++|-+++..+- + +.
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDp--n~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDP--NEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCC--cHHHHHHHHHHHhhccCcceE
Confidence 444556666665443211 11111237999999995444444 44564444444 356655543331 1 22
Q ss_pred -chhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----HHH-HHHHhhhh
Q 007128 506 -SIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVD-FVKKYLRA 575 (617)
Q Consensus 506 -~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~-~~~~~~~~ 575 (617)
.+|.-.|.++..+ .+||.|+|..++...+ +.+.+|.|+.|+|||||.+++-+... .++ -++.+++.
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve----~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVE----DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccC----CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 4555567777676 9999999999998555 88999999999999999999998876 333 34555555
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.73 E-value=4e-09 Score=100.43 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=88.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCR- 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l- 288 (617)
.+|||+|||.|.+...|++. ..+|+|.++..+..|+ ..|...+.+ +.|.++|+..-.+..++||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 48999999999999999886 3889999999888877 677777776 789999988877878889998742221
Q ss_pred -cccc-----cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 289 -IDWL-----QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 289 -~h~~-----~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+-.. ..+..++..+.++|+|||+|+|+.-++. .+++.+.++..+|+..
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYL 201 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEE
Confidence 1111 1123478889999999999999753331 1456666666666443
No 100
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.72 E-value=2.8e-09 Score=113.56 Aligned_cols=120 Identities=22% Similarity=0.239 Sum_probs=86.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccc---
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCR--- 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l--- 288 (617)
+.+|||+|||+|.++..++.. .++|+|+++.++..++.+ +...++. +.+..+|+.++|+++++||+|++..-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 368999999999887665433 689999999888877644 3334443 567788999999888899999985210
Q ss_pred --c--ccc-cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 289 --I--DWL-QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 289 --~--h~~-~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
. +.. .-...++.++.|+|+|||++++..+.. .++..+++..|| ++..
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------IDLESLAEDAFR-VVKR 313 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------CCHHHHHhhcCc-chhe
Confidence 0 001 112458899999999999999876543 134567888999 6554
No 101
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.71 E-value=5.2e-09 Score=102.19 Aligned_cols=118 Identities=13% Similarity=0.036 Sum_probs=81.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..++.. .|+++|+++.++..++... ...++ ++.+...|.. .+++ ++||+|++....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCch-hhcC-cCCCEEEECCCc-
Confidence 368999999999998888754 5899999998877776333 33333 3555555543 3333 589999986542
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+. ...++.++.++|+|||++++..... ....++.+++++.||+.+..
T Consensus 108 ~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 GN---LTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred cC---HHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceE
Confidence 21 2346788999999999999853221 11356778889999976543
No 102
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.70 E-value=1.6e-09 Score=108.11 Aligned_cols=97 Identities=14% Similarity=0.251 Sum_probs=77.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccccc-----chhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIG-----SIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~-----~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.|||+|||-|.++..||..|. +|+.+|. +.++++|..+.+.. ....-.|++..--.+||+|.|..|+.|++
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 499999999999999999997 8889995 78888887664421 11222244332116999999999999887
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..++.+..+.+||||.++++...-
T Consensus 139 ----dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 139 ----DPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEecccc
Confidence 88999999999999999999988754
No 103
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.70 E-value=1.9e-09 Score=116.28 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=69.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC----CcccccccccccCCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI----PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~----~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..++++ .|+++|+++.+++.++...+ ..+. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 48999999999999988765 58999999988877774433 2222 34555555432 234468999999755
Q ss_pred ccccc--c--ccceEEEEecccccCCceeeecC
Q 007128 288 RIDWL--Q--RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~--~--~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.-. . ...+++.++.++|+|||.|+++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 32211 1 11357889999999999999985
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.70 E-value=4.7e-09 Score=107.52 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=76.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++... ..++..+.+||+|+++.. .+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~------~~~~~~~~~fD~Vvani~-~~~ 191 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELN------VYLPQGDLKADVIVANIL-ANP 191 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCce------EEEccCCCCcCEEEEcCc-HHH
Confidence 368999999999888776654 38899999988877764 3333443211 112222337999997643 121
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
...++.++.++|||||+++++..... ..+.+...++..||+++.
T Consensus 192 ---~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 ---LLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEE
Confidence 23578899999999999999854321 125677788888987654
No 105
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.69 E-value=1.5e-09 Score=108.22 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=66.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDlV 282 (617)
.+|||||||+|.++..+++. .|+++|+++ +. ...++.+.++|+...+ +.+++||+|
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 58999999999999888764 489999987 21 1123567777877643 667899999
Q ss_pred ccccccccccccc-----------ceEEEEecccccCCceeeecCh
Q 007128 283 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p 317 (617)
+|+.+ .++...+ ..+|.++.++|+|||.|++..+
T Consensus 122 ~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 98754 3443221 2478999999999999999653
No 106
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.68 E-value=1e-08 Score=102.46 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-Ccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVL 267 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~ 267 (617)
....+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.. +.+.++ ++.+..+
T Consensus 65 ~~~~~~~~l~~------~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~ 135 (215)
T TIGR00080 65 MVAMMTELLEL------KP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVG 135 (215)
T ss_pred HHHHHHHHhCC------CC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEEC
Confidence 33455555554 33 368999999999999888764 289999999888777643 334444 4677777
Q ss_pred cccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|........+.||+|++..+. ..+...+.+.|+|||++++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAG-------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCc-------ccccHHHHHhcCcCcEEEEE
Confidence 876554445689999976542 23445688999999999985
No 107
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.67 E-value=1.1e-09 Score=113.56 Aligned_cols=99 Identities=16% Similarity=0.345 Sum_probs=67.9
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceE----EEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLK----LIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~----~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||.|+++.+++++ |+.|..|+.. +++.+ .+.++|+...+.-.+.++..++.+||.|.+-.+|.|+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 37999999999999999998 8865555543 34443 34566775444444456666778999999999999984
Q ss_pred hcCCCcccchhhccccccCcceEEEecC
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. -+....+.+++|+|||||.+++...
T Consensus 142 ~--~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 142 R--KNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp G--GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred h--hHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2 2678899999999999999987543
No 108
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=3.4e-09 Score=106.37 Aligned_cols=99 Identities=16% Similarity=0.018 Sum_probs=71.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH------------HhCCCcccccccccccCCC-CCccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL------------ERGIPAYLGVLGTKRLPYP-SRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~------------~rg~~~~~~~~d~~~lpf~-~~sFD 280 (617)
.+|||+|||.|..+..|+++ .|+|+|+|+..++.+..+... .....+.+.++|+..++.. ...||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 58999999999999999987 599999999877654321111 0123456677888777543 25899
Q ss_pred ccccccccccccccc-ceEEEEecccccCCceeee
Q 007128 281 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 281 lV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvi 314 (617)
+|+-..+++|..... ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999776655554332 4589999999999997554
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.66 E-value=2.3e-09 Score=107.53 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=68.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. .+.+..+| ++..+++||+|++..+++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---chhccCCcCEEEEcchhhc
Confidence 368999999999999888765 489999999888877744333 333 45566655 4445688999999988767
Q ss_pred cccc-cceEEEEecccccCCceeee
Q 007128 291 WLQR-DGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 291 ~~~~-~~~~L~el~RvLrPGG~lvi 314 (617)
+..+ ...+++++.+++++++.+.+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5433 23577778787765555444
No 110
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.66 E-value=2.5e-10 Score=101.27 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred hHHHhhhcchhhHhhhcC--CceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhc---ccCCcchhhhhhhh-h
Q 007128 461 NLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAY---STYPRTYDLLHAWT-V 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~---~~~p~tfDlvh~~~-~ 529 (617)
+|||+|||+|.++.+|++ .+. .|+.+|. +.+++.+.++- .-..++-.+.++ ...+..||+|.+.. .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 589999999999999999 677 4666663 67887777764 222222222233 33447799999988 2
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.++... .+...+|.++.+.|||||+++|.+
T Consensus 81 ~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3322111 245678999999999999999975
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.66 E-value=2.2e-09 Score=112.07 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh
Q 007128 182 GGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER 258 (617)
Q Consensus 182 gg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r 258 (617)
..+..|..|...-.+...++|.. ...++.+|||||||+|.++...+.. .|+++|+++..+..++ +.+..+
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~------~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N 207 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEK------YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELN 207 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHH------HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHT
T ss_pred CCCCcccCCCCHHHHHHHHHHHH------hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHc
Confidence 33566888877666666666654 1122369999999999776555543 5999999998887777 566667
Q ss_pred CCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHH
Q 007128 259 GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVE 338 (617)
Q Consensus 259 g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~ 338 (617)
++...+.+.. ......+.||+|+++-. .+ ....++..+.++|+|||++++|+.-... .+.+.+.++
T Consensus 208 ~~~~~~~v~~--~~~~~~~~~dlvvANI~-~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------~~~v~~a~~ 273 (295)
T PF06325_consen 208 GVEDRIEVSL--SEDLVEGKFDLVVANIL-AD---VLLELAPDIASLLKPGGYLILSGILEEQ--------EDEVIEAYK 273 (295)
T ss_dssp T-TTCEEESC--TSCTCCS-EEEEEEES--HH---HHHHHHHHCHHHEEEEEEEEEEEEEGGG--------HHHHHHHHH
T ss_pred CCCeeEEEEE--ecccccccCCEEEECCC-HH---HHHHHHHHHHHhhCCCCEEEEccccHHH--------HHHHHHHHH
Confidence 7665554322 22234589999997642 12 1234677799999999999998654421 245556666
Q ss_pred Hhhhhhhhc
Q 007128 339 RMCWRIAAK 347 (617)
Q Consensus 339 ~~gf~~v~~ 347 (617)
+ ||+++..
T Consensus 274 ~-g~~~~~~ 281 (295)
T PF06325_consen 274 Q-GFELVEE 281 (295)
T ss_dssp T-TEEEEEE
T ss_pred C-CCEEEEE
Confidence 5 8876543
No 112
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1.9e-09 Score=105.76 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=99.3
Q ss_pred eeEEEeecccccccccccccch---hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
...++|||||.|.+..+|...+ ++-+|.|..|+..++ -+...++.....+.|-+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 3579999999999999998874 567788887765543 3444566677788999999999999999999887 799
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHH--------------------HHHHHHHHHHHHHHhhhhhhhccCc
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE--------------------DLRIWKEMSALVERMCWRIAAKRNQ 350 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~--------------------~~~~w~~l~~l~~~~gf~~v~~~~~ 350 (617)
.++.+..+..+...|||+|.|+-+........+- ....-+++..++.++||.......+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 9999999999999999999999764332110000 0001166788888888876655433
No 113
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.65 E-value=1.4e-09 Score=111.10 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=71.6
Q ss_pred hhHHHhhhcchhhHhhhcC----CceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE----KDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++ .+. .|+.+|. +.|++.|.++- +...+.-.+.++..+| ..||+|.++.+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~---~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3599999999999988875 234 5777774 78888886662 2112222233344444 56999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++++... +...++.||.|+|||||.+++.|..
T Consensus 135 l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 135 LQFLEPS--ERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHhCCHH--HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9987522 4578999999999999999999854
No 114
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.65 E-value=2.5e-09 Score=111.68 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=78.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----cccccchhhhhhhccc--CCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGLIGSIHNWCEAYST--YPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++.+|++++. .|+.+|. +.+++.+.+ .|+ .+...+.++.. .+++||+|.+..+|+++
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999999876 5666674 566554433 344 12211222222 25899999999999877
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
. ..++..++.+|.|+|||||++++-...+ ..++++++... |+.+
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~ 255 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIV 255 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEE
Confidence 4 2267789999999999999966532111 34568888876 7775
No 115
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.64 E-value=4.1e-10 Score=108.58 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=69.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++ +.+...++. +.+...|... +.++++||+|+|+--+ +
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-H 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-B
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccch-h
Confidence 58999999999999888874 4899999998887776 344445555 6666666543 2346899999987542 2
Q ss_pred cccc-----cceEEEEecccccCCceeeecC
Q 007128 291 WLQR-----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~-----~~~~L~el~RvLrPGG~lvis~ 316 (617)
...+ ...++.+..+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2111 2458889999999999998754
No 116
>PRK08317 hypothetical protein; Provisional
Probab=98.64 E-value=1.7e-09 Score=108.18 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=69.8
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec--ccccchhhhhhhcc--cCC-cchhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR--GLIGSIHNWCEAYS--TYP-RTYDLLHAWTVF 530 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r--gl~~~~~~~~e~~~--~~p-~tfDlvh~~~~~ 530 (617)
..-.+|||+|||+|.++..+++...-.-+++.+|. +++++.+.++ +....++....++. .++ .+||+|++..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 33457999999999999999875210114666663 5666666555 11111111111211 133 899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.|+. ++..++.++.++|||||++++.+.
T Consensus 98 ~~~~----~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 98 QHLE----DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hccC----CHHHHHHHHHHHhcCCcEEEEEec
Confidence 9876 788999999999999999998764
No 117
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.63 E-value=5.4e-09 Score=112.45 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=77.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc--CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL--PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l--pf~~~sFDlV~~s~~l 288 (617)
..+||||||+|.++..++.. .++|+|+++.++..+..+ +.+.++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 57999999999999999865 689999999888888744 444454 577778887654 578899999997654
Q ss_pred ccccccc------ceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRD------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~------~~~L~el~RvLrPGG~lvis~ 316 (617)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4554332 257999999999999999964
No 118
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.63 E-value=1.2e-09 Score=107.64 Aligned_cols=113 Identities=20% Similarity=0.303 Sum_probs=76.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccc--cchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLI--GSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~--~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++ |+- ....+. ..+ .++.+||+|.+..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 4799999999999999999875 5677774 5676654332 331 111121 111 23578999999999987
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecCh-----------h---HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----------S---VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----------~---~~~~~~~~~~~~~w~~~ 581 (617)
+.. .+...++.++.|+|||||+++|-+.. . ..+++.+++.. |+.+
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~ 165 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELL 165 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEE
Confidence 642 25678999999999999996553211 1 34567777764 6654
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.7e-09 Score=111.53 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=86.2
Q ss_pred ceeecCCCCccccCchhhH-HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchh
Q 007128 176 EKIIFPGGGTHFHYGADKY-IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQN 250 (617)
Q Consensus 176 ~~~~Fpgg~~~F~~~a~~Y-~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a 250 (617)
..+.|......|....-.+ .+.+.+.++. ..+ .+|||+|||.|.++..|++. .++-+|++...++.+
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~------~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPP------DLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA 198 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCc------cCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH
Confidence 4455556666676654332 2334555554 222 38999999999999999875 578888888777777
Q ss_pred hhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc----ceEEEEecccccCCceeeecChhh
Q 007128 251 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 251 ~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+. .+..+++.......+....+..+ +||+|+|+--++.-..-. .+++.+..+.|++||.|.|+....
T Consensus 199 r~-Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 199 RK-NLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred HH-hHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 74 34444444422222333344454 999999986533221111 258889999999999999987633
No 120
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.62 E-value=1.2e-09 Score=110.17 Aligned_cols=126 Identities=20% Similarity=0.302 Sum_probs=86.8
Q ss_pred ceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhH
Q 007128 176 EKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 176 ~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~ 253 (617)
+..-+-|.|.||.-...++.+.+. .............++||||+|.|..+..|+.. .|++.++|+.|. .
T Consensus 60 ~iNG~LgRG~MFvfS~~Q~~~LL~----~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~ 130 (265)
T PF05219_consen 60 DINGILGRGSMFVFSEEQFRKLLR----ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----W 130 (265)
T ss_pred hHhhhhcCCcEEEecHHHHHHHhh----hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----H
Confidence 334556788888888777754443 21111112224568999999999999999875 688888887653 3
Q ss_pred HHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 254 FALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 254 ~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.-+++|.. +.+..++.-.+.+||+|.|.+++ .-...+..+|+++++.|+|+|+++++
T Consensus 131 rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 131 RLSKKGFT----VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred HHHhCCCe----EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 33456654 23334444345689999999874 45566678999999999999999985
No 121
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.62 E-value=1.8e-08 Score=102.29 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=82.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++. .+...++. +.+..+|... ++++++||+|+|+.-.+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999888864 58999999988877763 33444443 6677777655 456789999998532111
Q ss_pred ------cccc-------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 ------WLQR-------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ------~~~~-------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+... ...++.++.++|+|||.+++.... .. -..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----~~-----~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----DQ-----GEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc----cH-----HHHHHHHHHhCCCCce
Confidence 0000 013567889999999999985311 11 1457778888888654
Q ss_pred h
Q 007128 346 A 346 (617)
Q Consensus 346 ~ 346 (617)
.
T Consensus 238 ~ 238 (251)
T TIGR03534 238 E 238 (251)
T ss_pred E
Confidence 3
No 122
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.61 E-value=1.6e-09 Score=109.96 Aligned_cols=99 Identities=12% Similarity=0.185 Sum_probs=70.5
Q ss_pred hhHHHhhhcchhhHhhhcCC----ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK----DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|+++ +. +++.+|. ++|++.|.++ +....++-.+.++..+| ..+|+|.+..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~---~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 36999999999999988764 34 5667774 6888777654 11111111223333444 56999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++|+... +...+|.++.|+|||||.+++.|..
T Consensus 132 l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPE--DRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCeEEEEeecc
Confidence 9877422 4578999999999999999999864
No 123
>PRK14967 putative methyltransferase; Provisional
Probab=98.61 E-value=1.4e-08 Score=102.09 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++ +.+...++++.+...|... .+++++||+|+++.-..+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 68999999999998887764 5889999998777666 3344445566666667654 34567899999874321111
Q ss_pred cc--------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 293 QR--------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 293 ~~--------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
.. ...++.++.++|||||++++...... . ..++.+.++..||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~------~~~~~~~l~~~g~~ 178 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--G------VERTLTRLSEAGLD 178 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--C------HHHHHHHHHHCCCC
Confidence 00 12356778999999999998533321 0 13344555666663
No 124
>PLN03075 nicotianamine synthase; Provisional
Probab=98.61 E-value=4.8e-09 Score=109.06 Aligned_cols=102 Identities=10% Similarity=0.193 Sum_probs=76.1
Q ss_pred ceeEEEeeccccccccccccc------chhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLS------SDVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~------~~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
.+++|+|||||.|.++..++. ..++++|+++.+++.|+.......++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 347899999998854433322 14899999998888887444333444 4788888877764335789999988
Q ss_pred ccccccc-cccceEEEEecccccCCceeeecC
Q 007128 286 RCRIDWL-QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 286 ~~l~h~~-~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++++|. .+...++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 777774 455679999999999999999975
No 125
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.60 E-value=3.8e-09 Score=105.53 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEE-----EEeecCC-CCCceEEEeecc----cccc-----hhhhhhhcccCC
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWV-----MSVVPED-GPNTLKLIYDRG----LIGS-----IHNWCEAYSTYP 518 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v-----~~v~~~~-~~~~l~~~~~rg----l~~~-----~~~~~e~~~~~p 518 (617)
++.+.--+||||+||+|-+|..+.++--.. .+|+..| +++||.++.+|. +-.. +-.-.|++| ||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd 174 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD 174 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence 444555779999999999998888652221 4677777 478988877775 3222 111235667 66
Q ss_pred -cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHH-HHHHHhhhhccccc
Q 007128 519 -RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVV-DFVKKYLRALNWEA 580 (617)
Q Consensus 519 -~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~-~~~~~~~~~~~w~~ 580 (617)
++||......-.- ...+++.+|.|+.|||||||.|.+-+...+. +.|+.+.+.--.++
T Consensus 175 d~s~D~yTiafGIR----N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR----NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCcceeEEEeccee----cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999987533333 3447889999999999999999998887655 34444444433333
No 126
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.58 E-value=4.8e-09 Score=108.33 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=87.0
Q ss_pred ChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchh----hHhhhcCCc----eEEEEeecCCC-CCceEEE
Q 007128 428 SSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGS----FAAALKEKD----VWVMSVVPEDG-PNTLKLI 498 (617)
Q Consensus 428 ~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~----fa~~L~~~~----~~v~~v~~~~~-~~~l~~~ 498 (617)
+...|-.|...|....+.....+......+.-.+|+|+|||+|- +|..|++.. .+-..|+++|. +.||+.|
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 45668888888887665543322111122233579999999994 566665531 12347888884 6888777
Q ss_pred eecccc-----------------------------------cchhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCccc
Q 007128 499 YDRGLI-----------------------------------GSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGED 542 (617)
Q Consensus 499 ~~rgl~-----------------------------------~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~ 542 (617)
.+. .. -..|+..+. .+| +.||+|+|..+|.|+... +...
T Consensus 149 r~~-~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~~--~~~~ 223 (264)
T smart00138 149 RAG-IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDEP--TQRK 223 (264)
T ss_pred HcC-CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCHH--HHHH
Confidence 542 11 011222221 133 899999999999988522 4568
Q ss_pred chhhccccccCcceEEEecChhH
Q 007128 543 LLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 543 ~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
++.++.|+|+|||++++-+....
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHhCCCeEEEEECcccC
Confidence 99999999999999999877543
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.57 E-value=5.9e-09 Score=101.23 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=79.1
Q ss_pred ccccCccchhhHHHhhhcchhhHhhhcC-CceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCC-cchhhhhhhh
Q 007128 451 SPKIQSNSLRNLMDMKAHLGSFAAALKE-KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 451 ~~~i~~~~~r~vLD~g~G~G~fa~~L~~-~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~ 528 (617)
...|..+ .+|||+|||.|.+-++|.+ +++.+..|.- .+..+..+.+||+--...|..+.++.|| ++||.|..++
T Consensus 8 ~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 8 AEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred HHHcCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 3345554 3699999999999999987 6775444432 2456677788998656668888888898 9999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++++. +++.+|.||-|| |...|++=+.
T Consensus 84 tLQ~~~----~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 84 TLQAVR----RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHhHh----HHHHHHHHHHHh---cCeEEEEecC
Confidence 999987 788999999777 5567776554
No 128
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.56 E-value=3.9e-09 Score=103.76 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=60.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-c-CCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-L-PYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-l-pf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..+++. .++++|+++.++. .+.++++ .+..+|+.. + ++++++||+|+|+.++ |
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~-----~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l-~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL-----ACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTL-Q 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH-----HHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHh-H
Confidence 58999999999999888653 3577887765443 3334443 455566654 4 4778899999999875 4
Q ss_pred cccccceEEEEecccccC
Q 007128 291 WLQRDGILLLELDRLLRP 308 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrP 308 (617)
+..++..+++++.|++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred cCcCHHHHHHHHHHhCCe
Confidence 555667788888877664
No 129
>PRK14968 putative methyltransferase; Provisional
Probab=98.56 E-value=1.1e-08 Score=99.04 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=81.0
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC---cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++... ...+.. +.+...|... ++.+++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 58999999999998888765 6889999988777665333 333332 5566666544 345568999997643222
Q ss_pred cc--------------------cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 WL--------------------QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~--------------------~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.. .....+++++.++|+|||.+++..+... . -+.+.+++.+.||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~------~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--G------EDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--C------HHHHHHHHHHCCCeee
Confidence 10 0012368899999999999988653321 1 1456778888898654
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.56 E-value=5.7e-09 Score=111.01 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=84.3
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||+|.++..+++. +. .+|+.+|. ++|++.+.++.- +..++.-.+.++.-+++||+|.+..++.++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 36999999999998888763 21 25666664 577776655421 1222222233332238999999999998766
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh-----------------HHHHHHHhhhhccccccccccc
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------VVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
+...+|.|+.|+|||||.+++.++.. ..+++.+++++.+++.+ ++.+
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V-~i~~ 256 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV-KLKR 256 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE-EEEE
Confidence 67889999999999999998865321 24678899999999986 5544
No 131
>PTZ00146 fibrillarin; Provisional
Probab=98.55 E-value=1.6e-08 Score=104.79 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=78.8
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc---cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR---LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~---lpf~~~sFDlV~~s~ 286 (617)
..+|||+|||+|.++.++++. .|+++|+++.+... +++.+.++ .++.+...|+.. +.+..++||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d-Ll~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD-LTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 468999999999999999875 39999999754432 22344333 355566667543 222345899999775
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhh---cCCHHHHHHH-HHHHHHHHHhhhhhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY---AQDEEDLRIW-KEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~---~~~~~~~~~w-~~l~~l~~~~gf~~v~ 346 (617)
. . .++...++.++.++|||||+|++...... ..+++ ..+ +++ +.+++.||+.+.
T Consensus 211 a-~--pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe--~~f~~ev-~~L~~~GF~~~e 268 (293)
T PTZ00146 211 A-Q--PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE--VVFASEV-QKLKKEGLKPKE 268 (293)
T ss_pred C-C--cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH--HHHHHHH-HHHHHcCCceEE
Confidence 3 2 22223466789999999999999522111 11122 122 334 667888897553
No 132
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.53 E-value=1.8e-09 Score=101.74 Aligned_cols=96 Identities=20% Similarity=0.347 Sum_probs=71.2
Q ss_pred hhHHHhhhcchhhHhhhcC-C--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc----CCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE-K--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST----YPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~-~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~----~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++ . +. .++.+|. +.|++.|.++ |+- .++.-+.++.. |++.||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 3699999999999999994 2 45 4666663 6888877774 331 23322233322 33789999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.++.++. +...+|.+|.|.|+|||.+++.+..
T Consensus 81 ~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP----DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc----CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9997665 7788999999999999999999988
No 133
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.52 E-value=6e-09 Score=113.10 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=69.7
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|+++..+++. ++ .|+.+|. +++++.+.++.---.+.-.+.++...+++||+|++..+|.|+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~-- 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP-- 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh--
Confidence 47999999999999999875 55 5666663 67777776653100111112233334589999999999998741
Q ss_pred CCcccchhhccccccCcceEEEec
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.++..++.++.|+|||||++++.+
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 256789999999999999999865
No 134
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.50 E-value=1.9e-08 Score=99.25 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=79.4
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++. .+...++ ++.+...|.... +..++.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 36899999999998887653 258999999988877663 3444442 456666666543 33346899998743
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
. ......++.++.++|+|||++++..... ....++...+++.||
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGF 163 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 2 1223468889999999999999854322 113566777788887
No 135
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.49 E-value=1.6e-08 Score=99.12 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=69.2
Q ss_pred eEEEeecccccccccccccc-hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
..|-|+|||.+.++..+... .|...|+.+. +-.+..+|+..+|+++++.|++++..+++ -.+
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn 136 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTN 136 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCC
Confidence 57999999999999877643 5777776542 22356689999999999999999877654 344
Q ss_pred cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
...++.|+.|+|||||.|.|..-...... -+.+.+.++..||+....
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~------~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFEN------VKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcC------HHHHHHHHHHCCCeEEec
Confidence 46799999999999999999743332221 256777889999987653
No 136
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.49 E-value=6.6e-08 Score=96.34 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=65.8
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||+|||+|.++..|+.. .++++|+++.++..++..+.. .++ ++.+...|........++||+|++..+..+
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcCCCcCEEEEccCchh-
Confidence 368999999999988876654 588999998777666643333 233 366666665443223478999998765322
Q ss_pred ccccceEEEEecccccCCceeeecC
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+..++.+.|+|||.+++..
T Consensus 157 ------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 157 ------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ------hhHHHHHhcCCCcEEEEEE
Confidence 2345789999999999853
No 137
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=2.7e-08 Score=98.86 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=93.0
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHH-HhCCCccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGV 266 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~ 266 (617)
..+...+++.. ......+||+||||.|.....+++. .|.+.|+|+..+..-..+... +....+.+..
T Consensus 57 L~~Efpel~~~------~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~D 130 (264)
T KOG2361|consen 57 LLREFPELLPV------DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWD 130 (264)
T ss_pred HHHhhHHhhCc------cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccccee
Confidence 33445555554 3333348999999999988888763 488999999766544322111 1111122222
Q ss_pred cccc--ccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeecChhhhcCCHHH-----------------
Q 007128 267 LGTK--RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQDEED----------------- 326 (617)
Q Consensus 267 ~d~~--~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~~~~~----------------- 326 (617)
++.. .-|...+++|+|++.+++....++. ..++.++.++|||||.+++.+...+......
T Consensus 131 lt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDG 210 (264)
T KOG2361|consen 131 LTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDG 210 (264)
T ss_pred ccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCC
Confidence 2222 2356678999999988866554432 4599999999999999999865543221100
Q ss_pred HHHH----HHHHHHHHHhhhhhhhcc
Q 007128 327 LRIW----KEMSALVERMCWRIAAKR 348 (617)
Q Consensus 327 ~~~w----~~l~~l~~~~gf~~v~~~ 348 (617)
...| +++..++..+||..+...
T Consensus 211 T~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 211 TRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred ceeeeccHHHHHHHHHhcccchhccc
Confidence 0001 678888889998766543
No 138
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.47 E-value=2.1e-08 Score=100.53 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=67.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccchhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+..+ .++.+|. +.+++.+.++.- +-.+..-.+.++..+++||+|++..+++|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 469999999999999998764211 2455553 455444433321 1111111123332348999999999999775
Q ss_pred CCCcccchhhccccccCcceEEEecC
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++..+|.++.|+|||||++++...
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 788999999999999999999764
No 139
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.47 E-value=1.2e-08 Score=102.52 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=75.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----ccc----hhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-----IGS----IHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~----~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
++|||+|||.|-++.-|++.|. +|+.+|. +.|+++|.+.-- .+. +---|++....-..||.|.|..|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 5699999999999999999998 6777775 577777776621 120 11122333333366999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+.|+. |+..++.-+-+.|||||.++|++-.-
T Consensus 168 leHV~----dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 168 LEHVK----DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHh----CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 99998 88999999999999999999987653
No 140
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.47 E-value=5.3e-09 Score=93.53 Aligned_cols=101 Identities=26% Similarity=0.395 Sum_probs=70.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..+++. .++++|+++..+..++..... .+. ++.+.+.|..... +++++||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 58999999999988887754 588899988766666533333 232 4678888887765 778999999987543
Q ss_pred cccccc-------cceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQR-------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~-------~~~~L~el~RvLrPGG~lvis~p 317 (617)
...... ...+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 322111 12468899999999999998654
No 141
>PRK04266 fibrillarin; Provisional
Probab=98.46 E-value=3.9e-08 Score=99.23 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=80.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE----EEeec-ccccchhhhhhhc--ccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK----LIYDR-GLIGSIHNWCEAY--STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~----~~~~r-gl~~~~~~~~e~~--~~~p~tfDlvh~~~~~~~ 532 (617)
.|||+|||+|.++..|++.-- -..|..+|. +.|++ .+.++ ++.....+-..+. ..++.+||+|.++.....
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~ 153 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPN 153 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChh
Confidence 699999999999999988521 124666664 45554 33332 2222222222211 123467998864321110
Q ss_pred hhhcCCCcccchhhccccccCcceEEEe------cC----hhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIR------DK----QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIV 602 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~------~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 602 (617)
....+|.|+.|+|||||.++|. |. ....++..+.++..+++.+ +.++ ..+.. .....+++
T Consensus 154 ------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i-~~~~--l~p~~-~~h~~~v~ 223 (226)
T PRK04266 154 ------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL-EVVD--LEPYH-KDHAAVVA 223 (226)
T ss_pred ------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE-EEEc--CCCCc-CCeEEEEE
Confidence 1124588999999999999993 22 1223345588888889887 6665 44432 35778888
Q ss_pred Eec
Q 007128 603 QKK 605 (617)
Q Consensus 603 ~K~ 605 (617)
+|+
T Consensus 224 ~~~ 226 (226)
T PRK04266 224 RKK 226 (226)
T ss_pred EcC
Confidence 774
No 142
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.45 E-value=8e-08 Score=95.86 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=74.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc---ccchhh---hhhhcccC-Ccchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL---IGSIHN---WCEAYSTY-PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~---~~e~~~~~-p~tfDlvh~~~~~~~~ 533 (617)
.|||+|||+|.++..++++..-...|+.+|...|... .++ .+.+.+ ..+-...+ +.+||+|.++......
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccC
Confidence 6999999999999988876321124555554323221 121 111111 00000112 2789999986543211
Q ss_pred hh-------cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhc--ccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 534 EK-------RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRAL--NWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 534 ~~-------~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.. .-...+.+|.|+.|+|||||.|++..... +.+.+++..+ +|+.+....+ ...-+...|.+++|+.
T Consensus 131 g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp--~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 131 GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKP--DSSRARSREVYIVATG 206 (209)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECC--ccccccCceeEEEeec
Confidence 00 00012579999999999999999965432 1233334443 5555422223 2223456788888864
No 143
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.44 E-value=5.9e-08 Score=97.14 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=80.7
Q ss_pred eeEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
...|-|+|||.+.++..- ...|+.+|+.+ ++-.+..+|+.++|+++++.|++++..++ +..+
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 357899999999888622 23577777754 23345678999999999999999876554 3455
Q ss_pred cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
...++.|++|+|+|||.|+|..-.....+- ..+.+.+..+||.+....
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv------~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDV------KGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccH------HHHHHHHHHcCCeeeehh
Confidence 567999999999999999997433322221 347788899999876544
No 144
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.44 E-value=3.3e-08 Score=98.19 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=64.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..+++....-..++.+|. +.+++.+.++.- +-.++.-....+.-+.+||+|++..++.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 357999999999999999875321013444453 344444433321 111111111222113789999998888755
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. ++..++.++.++|||||++++.+.
T Consensus 120 ~----~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 120 T----DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred c----cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 778999999999999999998653
No 145
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.42 E-value=3.7e-08 Score=102.11 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=65.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceE--EEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCC-cchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVW--VMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~--v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||+|.++..|++..-- ..+|+.+|. +++++.|.++.- +.....-.+.++ ++ ++||+|.+. |.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp-~~~~sfD~I~~~--~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-FADQSLDAIIRI--YA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-CcCCceeEEEEe--cC---
Confidence 46999999999999998764111 125677774 688887766632 111111112233 33 899999862 22
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh-HHHHHHHh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKY 572 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~ 572 (617)
...+.|+.|+|||||+|++..+.. .+.+++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 235789999999999999987654 33344443
No 146
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.41 E-value=1.5e-08 Score=98.67 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=73.6
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccC-C-cchhhhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTY-P-RTYDLLHAWTV 529 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~-p-~tfDlvh~~~~ 529 (617)
+....++++||+|||.|.|++.|+.+- -.++.+|. +..++.|.+|-- .+.+.-...+++.+ | .+|||||++-|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 567899999999999999999999973 35666664 567777777632 12222122333433 4 99999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+-++. +.-++..++..|...|+|||.+|+.+..+
T Consensus 116 lYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 116 LYYLD-DAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 99885 22245678999999999999999988765
No 147
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.41 E-value=3.2e-08 Score=101.38 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=83.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c 538 (617)
.+|||+|||+|.++.++++.+.. .|+.+|. +.+++.|.++.-...+.+. ..+..-..+||+|+|+.....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~~fD~Vvani~~~~------ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDLKADVIVANILANP------ 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCCCcCEEEEcCcHHH------
Confidence 46999999999999988877652 3667774 5677666554211111010 011110127999998755442
Q ss_pred CcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 539 SGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 539 ~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+..++.++.|+|||||++++++... ..+++...+...+|+.+ ++.. .+.-..++++|
T Consensus 192 -~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~-~~~~-------~~~W~~~~~~~ 249 (250)
T PRK00517 192 -LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD-EVLE-------RGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE-EEEE-------eCCEEEEEEEe
Confidence 3467889999999999999997654 55678888888999885 3332 23455666665
No 148
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.40 E-value=6.5e-08 Score=104.39 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=76.8
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc-----ccchhhhhhhcccCC-cchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL-----IGSIHNWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl-----~~~~~~~~e~~~~~p-~tfDlvh~ 526 (617)
.+|||+|||+|.++..|+++ .. .|+.+|. +.+++.+.+. +. +..+.+ ..+...+ .+||+|.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~---~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCCEEEEEE
Confidence 47999999999999999876 23 4556664 3555554432 11 111111 1123333 68999999
Q ss_pred hhhhhhhhh-cCCCcccchhhccccccCcceEEEecC--hhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 527 WTVFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDK--QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 527 ~~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
+--|+.... ..-....++.+..|+|||||.++|-.. ......+++++. .+ +++. +..+-+|+-++
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~--~~va------~~~kf~vl~a~ 372 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NC--TTIA------TNNKFVVLKAV 372 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----Cc--eEEc------cCCCEEEEEEE
Confidence 877653210 000124688999999999999988742 234445555332 22 3332 24567888888
Q ss_pred e
Q 007128 604 K 604 (617)
Q Consensus 604 K 604 (617)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 8
No 149
>PRK06202 hypothetical protein; Provisional
Probab=98.39 E-value=2.8e-08 Score=100.37 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=68.0
Q ss_pred cchhhHHHhhhcchhhHhhhcCC----ceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK----DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+-.+|||+|||+|.++..|++. +. ..+|+.+|. ++|++.+.++.. +.....-.+.++.-+++||+|.|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 34457999999999999888742 21 126788884 788887776632 1111111233333348999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|+|+... ++..+|.||.|++| |.++|.|
T Consensus 138 ~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 138 FLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 99988632 35679999999999 5555555
No 150
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.39 E-value=6.8e-08 Score=104.71 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=80.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC-CCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP-SRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are-Na~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK-NAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 48999999999998877643 58999999999888874 4444566777888887544332 458999998642111
Q ss_pred ccc--------------------c----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 WLQ--------------------R----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~~--------------------~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
-.+ + ...++.++.+.|+|||++++.... .+ -+.+.++++..||..+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----~Q-----~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----DQ-----GAAVRGVLAENGFSGV 401 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----cH-----HHHHHHHHHHCCCcEE
Confidence 000 0 013455566789999998874311 11 1467788888888543
No 151
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.39 E-value=4.6e-08 Score=95.41 Aligned_cols=129 Identities=14% Similarity=0.230 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----ccc--ccchhh
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGL--IGSIHN 509 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl--~~~~~~ 509 (617)
+.|++.+-+-...+.. +. -.+|||+|||+|.++..|+...- ...|+.+|. ++|++.+.+ .|+ +-.++.
T Consensus 25 ~~~~~~~~d~i~~~~~-~~---~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEY-LD---GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHh-cC---CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 4566655432222221 32 24799999999998888764321 024666664 455544332 233 222221
Q ss_pred hhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccc
Q 007128 510 WCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 510 ~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~ 579 (617)
-.+.+. .+++||+|.+.. +. ++.+++.++.|+|||||.+++.+......++..+.++++-.
T Consensus 100 d~~~~~-~~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~ 160 (181)
T TIGR00138 100 RAEDFQ-HEEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVL 160 (181)
T ss_pred chhhcc-ccCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhc
Confidence 122222 248999999866 33 45678899999999999999999988888888888875433
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.39 E-value=2.5e-08 Score=84.66 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=68.7
Q ss_pred EEEeeccccccccccccc---chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCC-CCCccccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLS---SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY-PSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~---~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~~ 292 (617)
+|||+|||+|.++..+++ ..++++|+++..+..++............+...|...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 489999999998888876 2588888887655544421111112235555666655543 457899999988744324
Q ss_pred cccceEEEEecccccCCceeeec
Q 007128 293 QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis 315 (617)
.....++..+.+.|+|||+++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 44467899999999999999875
No 153
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.39 E-value=1.3e-07 Score=92.99 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=78.1
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcc--ccccccccc--CC------CCCccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAY--LGVLGTKRL--PY------PSRSFELA 282 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~--~~~~d~~~l--pf------~~~sFDlV 282 (617)
+|||||||||..+.+++++ ...-.|+.+..... ......+.+.+.. =...|+..- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~s-I~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPS-IRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhh-HHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999888888765 23333444422111 1112223332210 112333322 22 34689999
Q ss_pred ccccccccccccc--ceEEEEecccccCCceeeecChhhhc--CCHHHHHH----------------HHHHHHHHHHhhh
Q 007128 283 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFAYSSPEAYA--QDEEDLRI----------------WKEMSALVERMCW 342 (617)
Q Consensus 283 ~~s~~l~h~~~~~--~~~L~el~RvLrPGG~lvis~p~~~~--~~~~~~~~----------------w~~l~~l~~~~gf 342 (617)
+|.++ +|+..-. +.+++.+.++|+|||.|++-+|.... ...++... .+++.+++.+.|+
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99997 5654432 45999999999999999997654421 11111111 2789999999999
Q ss_pred hhhhcc
Q 007128 343 RIAAKR 348 (617)
Q Consensus 343 ~~v~~~ 348 (617)
+.....
T Consensus 186 ~l~~~~ 191 (204)
T PF06080_consen 186 ELEEDI 191 (204)
T ss_pred ccCccc
Confidence 876544
No 154
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.38 E-value=4.7e-08 Score=102.86 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=68.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHH-hCCCcccccccccc-cCCCCCc---cc-cccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVLGTKR-LPYPSRS---FE-LAHC 284 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~d~~~-lpf~~~s---FD-lV~~ 284 (617)
.+|||+|||+|..+..|+++ .++++|+|+.|++.++.+.... .++++...++|..+ ++++... .+ ++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 57999999999988888754 5899999999988887554433 23556666778765 4444332 23 3333
Q ss_pred cccccccccc--cceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDWLQR--DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis~ 316 (617)
..+ +++..+ ...+|++++++|+|||.|++..
T Consensus 145 gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 333 333332 2458999999999999999864
No 155
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.38 E-value=8e-08 Score=94.09 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=96.8
Q ss_pred HhhccccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc-----ccchhhhhhhcccCCcc
Q 007128 448 NLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL-----IGSIHNWCEAYSTYPRT 520 (617)
Q Consensus 448 ~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~~~~~~e~~~~~p~t 520 (617)
+++. .|.....++|.|+|||+|.-++.|+++ +.- -|+.+|+ ++||..|.+|+. .|++++|+-. +.
T Consensus 21 dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 3444 366788999999999999999999987 321 4788886 799999988876 5889999832 78
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~~~~w~~ 580 (617)
+|||.++.+|+-++ |-..+|.-+---|.|||++.+.-+-. ...-|.+.++..-|..
T Consensus 93 ~dllfaNAvlqWlp----dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~ 152 (257)
T COG4106 93 TDLLFANAVLQWLP----DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQ 152 (257)
T ss_pred cchhhhhhhhhhcc----ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhh
Confidence 99999999999777 44667777777899999999987754 3335888888888887
No 156
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.38 E-value=3.2e-09 Score=93.05 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=63.0
Q ss_pred HHHhhhcchhhHhhhcCCc--eEEEEeecCCC-CCceEEEeecccc-c-chhhhhhhcccC---Ccchhhhhh-hhhhhh
Q 007128 462 LMDMKAHLGSFAAALKEKD--VWVMSVVPEDG-PNTLKLIYDRGLI-G-SIHNWCEAYSTY---PRTYDLLHA-WTVFSD 532 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~--~~v~~v~~~~~-~~~l~~~~~rgl~-~-~~~~~~e~~~~~---p~tfDlvh~-~~~~~~ 532 (617)
|||+|||+|..+..|++.- ..-..+..+|. ++|++.+.++.-. + .++..+.++..+ .++||+|.| ..+|.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998752 00136778884 7898888777620 0 112222222222 279999999 455888
Q ss_pred hhhcCCCcccchhhccccccCcc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTG 555 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG 555 (617)
+..+ +.+.++.+|.++|||||
T Consensus 81 ~~~~--~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPE--ELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHH--HHHHHHHHHHHTEEEEE
T ss_pred CCHH--HHHHHHHHHHHHhCCCC
Confidence 7644 67899999999999998
No 157
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.37 E-value=7.3e-08 Score=100.60 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|... ++++++||+|+|+--.+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 58999999999999888864 5899999998888877 34455554 36677777643 34556899999862100
Q ss_pred ------------cccc------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 290 ------------DWLQ------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 290 ------------h~~~------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
++.+ ....++.++.++|+|||++++.... . ++.+.+++...||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~------~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----S------MEALEEAYPDVPFT 268 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----C------HHHHHHHHHhCCCc
Confidence 0000 0123577888999999999986432 1 13456666666653
No 158
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.37 E-value=1.1e-08 Score=100.15 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=76.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC--CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhhhc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG--PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~--~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~~~ 536 (617)
++||+|||.|.-|.+|+++|..|..+...+. ....++|.++++- ++.++.++.++ +..||+|.+..||.++..
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~- 109 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQR- 109 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-G-
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCCH-
Confidence 6999999999999999999994433333221 2344555566762 44444454443 489999999999998863
Q ss_pred CCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
..+..++..|..-|+|||+++|-..++ .-++++.+.. .|+.+
T Consensus 110 -~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il 165 (192)
T PF03848_consen 110 -ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEIL 165 (192)
T ss_dssp -GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEE
T ss_pred -HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEE
Confidence 366789999999999999998843222 2235666666 58875
No 159
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.36 E-value=1.5e-08 Score=104.85 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc----c--ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG----L--IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg----l--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
+|||+|||+|..+..++.. +. -..|+.+|. +.|++.|.++. + +-.++.--+.++ ++ ++||+|+++.++.
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCVIN 157 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCccc
Confidence 7999999999876555442 11 114666664 67777766542 2 111111112233 33 7999999999888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.. +...++.|+.|+|||||+|++.+.
T Consensus 158 ~~~----d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP----DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 678899999999999999999753
No 160
>PRK00811 spermidine synthase; Provisional
Probab=98.34 E-value=2.4e-07 Score=96.76 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=70.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH-----hCCCcccccccccc-cCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE-----RGIPAYLGVLGTKR-LPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~-----rg~~~~~~~~d~~~-lpf~~~sFDlV~~ 284 (617)
+++||+||||.|.++..++++ .|+++|+++.++..++..+... ...++.+...|+.. +...+++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 468999999999999988765 4889999998887776433321 12346667777654 2334678999997
Q ss_pred ccccccccccc----ceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDWLQRD----GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~ 316 (617)
... .++.... ..+++.+.+.|+|||.+++..
T Consensus 157 D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 532 2221111 346788999999999999854
No 161
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.34 E-value=4.4e-08 Score=97.12 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=77.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhccc-C-Ccchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYST-Y-PRTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~-~-p~tfDlvh~~~ 528 (617)
-.+|||+|||+|.++..|++..-. .+|+.+|. +.+++.+.++ ++ +-.++ +..+.++. + +.+||+|.++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 357999999999999999875210 15666663 5666655432 22 11122 22133332 4 38999998743
Q ss_pred hhhhhh----hcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhccccc
Q 007128 529 VFSDIE----KRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~w~~ 580 (617)
..+... ..+.....+|.++.|+|||||.|+|. +......++.+.+..-+|++
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 322110 11123567899999999999999886 45556777888888888877
No 162
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.34 E-value=4e-08 Score=95.28 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=78.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..++..+. .|+.+|. +.+++.+.++ ++ +-.++ ++.+ ..+.+||+|.++..+.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 3599999999999999998765 5666663 5666555443 22 11111 2222 12479999998766643
Q ss_pred hhhc-----------------CCCcccchhhccccccCcceEEEecChhH-HHHHHHhhhhccccc
Q 007128 533 IEKR-----------------GCSGEDLLLEMDRILRPTGFVIIRDKQSV-VDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~~-----------------~c~~~~~l~Em~RiLrPgG~~ii~~~~~~-~~~~~~~~~~~~w~~ 580 (617)
.... ...++.+|.++.|+|||||.+++.+.... ..++.+.++..+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY 160 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence 3210 11145689999999999999999876654 677888888889987
No 163
>PRK14968 putative methyltransferase; Provisional
Probab=98.34 E-value=6.2e-08 Score=93.84 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=84.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec---------ccccchhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR---------GLIGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r---------gl~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
.+|||+|||.|.++..|++++. +|..+|. +++++.+.++ ++.-..+++.+.+.. .+||+|.++..
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence 4699999999999999998865 5666664 5666555222 122223344443322 58999976543
Q ss_pred hhhh-----------------hhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccccccccCCCCC
Q 007128 530 FSDI-----------------EKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 530 ~~~~-----------------~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
+... ......+..++.++.|+|||||.+++-.+. ...+++.+++...+|+.. .+. ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~---~~~ 175 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE-VVA---EEK 175 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee-eee---ecc
Confidence 3210 000112456899999999999998776543 246779999999999873 222 122
Q ss_pred CCCCCeEEEEEEe
Q 007128 592 DKDGDEVVFIVQK 604 (617)
Q Consensus 592 ~~~~~~~~l~~~K 604 (617)
...+.-.++..+|
T Consensus 176 ~~~~~~~~~~~~~ 188 (188)
T PRK14968 176 FPFEELIVLELVK 188 (188)
T ss_pred cCCceEEEEEEeC
Confidence 2344444555544
No 164
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.33 E-value=7.7e-08 Score=99.40 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=98.5
Q ss_pred chhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEeeccccc---chhhh---hhhcccCCcchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIYDRGLIG---SIHNW---CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~~rgl~~---~~~~~---~e~~~~~p~tfDlvh~~~~~ 530 (617)
.=|.|||||||.|-+.-.|+.+|. .|..|.|... -.+++-.-+-++| .+|.. -|.++. .++||+|.|-+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 445799999999999999999877 5666666542 1111111111121 11111 144444 5999999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEec-----Chh-------------------HHHHHHHhhhhccccccccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRD-----KQS-------------------VVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-----~~~-------------------~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
=|.. ++.+.|.++...|||||-+|+-. ... ...-++..+++.+++.+ +++|
T Consensus 193 YHrr----~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v-~~v~ 267 (315)
T PF08003_consen 193 YHRR----SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV-RCVD 267 (315)
T ss_pred hccC----CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE-EEec
Confidence 8766 88999999999999999998533 222 46679999999999988 7776
Q ss_pred CCCCCCCCCCeEEEEEEecccccCCCCCC
Q 007128 587 ASSDSDKDGDEVVFIVQKKIWLTSESLRD 615 (617)
Q Consensus 587 ~~~~~~~~~~~~~l~~~K~~w~~~~~~~~ 615 (617)
. .. ...+|. ||+=|-..+|+.+
T Consensus 268 ~--~~-Tt~~EQ----R~T~Wm~~~SL~d 289 (315)
T PF08003_consen 268 V--SP-TTIEEQ----RKTDWMDFQSLED 289 (315)
T ss_pred C--cc-CCHHHh----ccCCCcCcccHHH
Confidence 2 21 122332 6788887777654
No 165
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.32 E-value=2e-07 Score=102.85 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--CCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--YPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--f~~~sFDlV~~---- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+...++.+.+..+|+..++ +++++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 368999999999998888764 5899999998888776 444555666677778877654 34578999984
Q ss_pred ccc-cc------ccccc----------cceEEEEecccccCCceeeecChhhh
Q 007128 285 SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 285 s~~-l~------h~~~~----------~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
+.. .+ .|... ...+|.++.++|||||++++++-...
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 321 11 11111 12478899999999999999865443
No 166
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.32 E-value=2.4e-07 Score=98.14 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++. .+...+. ++.+..+|....+...++||+|++.....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence 68999999999999888753 38899999988777763 3333444 36667777766655557899999875432
Q ss_pred ccccccceEEEEecccccCCceeeec
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+. ...+.+.|+|||.+++.
T Consensus 161 ~i-------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 161 EV-------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred Hh-------HHHHHHhcCCCCEEEEE
Confidence 22 12367899999998884
No 167
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.32 E-value=1e-07 Score=93.85 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc-cCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR-LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~-lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++.+ +.+.++ ++.+..+|+.. ++.....+|.++..
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~--- 116 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE--- 116 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE---
Confidence 36899999999999888764 2599999999888777643 333443 45666666543 22222345665432
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
...+...++.++.++|+|||++++..+
T Consensus 117 --~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 --GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred --CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 112224689999999999999999754
No 168
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.32 E-value=4.4e-08 Score=102.49 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=75.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccC-Ccchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTY-PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~-p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++.++++.+. ..|..+|. +.+++.+.++. +-..+.....+.... +..||+|+|+.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 4799999999999988887764 25667774 56666665542 111111111112222 379999999766553
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~ 581 (617)
+..++.++.|+|||||+++++.... ..+++.+.+++. |+.+
T Consensus 238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 3468999999999999999987643 445667766665 7764
No 169
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.32 E-value=5.7e-08 Score=94.88 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=76.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~~~~~~~ 532 (617)
-.+|||+|||+|.++..++++.- -.+|+.+|. +.+++.+.++ ++ ..+.-.+.+. ..++..||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~~- 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSGG- 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCcc-
Confidence 34799999999999999886521 124666664 4566555432 22 1111111111 12357899999865443
Q ss_pred hhhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~~ 581 (617)
.+..++.++.|+|+|||++++.. .....+++.+++++.+|+.+
T Consensus 109 ------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 ------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 35568899999999999999976 45567788899999998764
No 170
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.31 E-value=9.5e-08 Score=93.45 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDl 281 (617)
+.+|||+|||+|.++..++.. .|+++|+++.+ ...++.+..+|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 368999999999988877653 38999998843 1123445555655432 45678999
Q ss_pred cccccccc---cccc-------ccceEEEEecccccCCceeeecC
Q 007128 282 AHCSRCRI---DWLQ-------RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 282 V~~s~~l~---h~~~-------~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|++..+.. +|.. ....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99854310 1111 11358899999999999999964
No 171
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.30 E-value=2.1e-07 Score=91.03 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=70.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc---ccchhhhh---hhcccCC-cchhhhhhhhh---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL---IGSIHNWC---EAYSTYP-RTYDLLHAWTV--- 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~~~---e~~~~~p-~tfDlvh~~~~--- 529 (617)
.+|||+|||+|+++..++++..-...|..+|...+.. ..++ .+...++. +....++ ++||+|.++..
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 3699999999999988876421111355555422221 1122 11221111 0011233 78999997543
Q ss_pred -----hhhhhhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 530 -----FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 530 -----~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
+.|.. ..++.+.+|.++.|+|||||.+++.. ....++++-..++..=|.. ....| .-......|++++|.
T Consensus 111 ~g~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 111 SGYWDIDHLR-SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKV-KVTKP--QASRKRSAEVYIVAK 186 (188)
T ss_pred CCCccccHHH-HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceE-EEeCC--CCCCcccceEEEEEe
Confidence 11111 11234689999999999999999943 2222222222221111222 11222 223345678898885
No 172
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=5.9e-08 Score=100.00 Aligned_cols=97 Identities=22% Similarity=0.391 Sum_probs=73.5
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEE----EeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKL----IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~----~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
..|||+|||-|+++.+++++ +|.|..|+-. +++... +.++|+-..++-.-++..+++..||-|.+-.+|.|+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg 151 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVG 151 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhC
Confidence 36999999999999999987 8955444443 344444 4556886455544455555666799999999999986
Q ss_pred hcCCCcccchhhccccccCcceEEEe
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.. +..+.+.-++++|+|||.+++-
T Consensus 152 ~~--~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 152 KE--NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cc--cHHHHHHHHHhhcCCCceEEEE
Confidence 33 6789999999999999998654
No 173
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.29 E-value=7e-07 Score=92.19 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=76.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..++.. .++++|+++.++..++.........++.+..+|... ++++++||+|+++.-.+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 358999999999988888754 588999998877766643331122346666666533 234578999998532110
Q ss_pred c------cc-------------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 291 W------LQ-------------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 291 ~------~~-------------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
. .. ....++.++.++|+|||++++... + .. -+.+.+++...||..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~-~~-----~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y-DQ-----GEAVRALLAAAGFAD 257 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c-hH-----HHHHHHHHHhCCCce
Confidence 0 00 001245566699999999998431 1 11 145677777888853
No 174
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.29 E-value=2.3e-07 Score=102.37 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=72.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCccc--ccccccccCC--CCCccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYL--GVLGTKRLPY--PSRSFELAHC-- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~--~~~d~~~lpf--~~~sFDlV~~-- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+.+.+ ..+|....++ ++++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 368999999999888777653 58999999988877763 44445655333 4455554443 4678999984
Q ss_pred --c-ccccccccc----------------cceEEEEecccccCCceeeecChhhhc
Q 007128 285 --S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYA 321 (617)
Q Consensus 285 --s-~~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~ 321 (617)
+ ...++..++ ...+|.++.++|||||++++++-...+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 222221111 135888999999999999998765543
No 175
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.29 E-value=7.1e-08 Score=96.52 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=82.4
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccc----cchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLI----GSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~----~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..|++.+. .|+.+|. ++|+..|.++.-. ..+...+.++...+++||+|.+..++.|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 45799999999999999998766 5667774 6888777766321 11222223444445899999998888776
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh------------------------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------~~~~~~~~~~~~~w~~~ 581 (617)
.. .++..++.++.|+++|++++.+..... ..+++.++++..+|+.+
T Consensus 133 ~~--~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 133 PA--SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred CH--HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 32 256789999999999888887754322 23456677777777764
No 176
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.29 E-value=8.1e-08 Score=97.32 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccC--CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lp--f~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..++++ .+++|++.+.+...|+...+... .-.+.+.+.|+..+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 468999999999999999876 58899998887777775444422 123667777877654 33447999999732
Q ss_pred cccc-----------------ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDW-----------------LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~-----------------~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.+.- ..+.+.+++-..++|||||++.+..++. ...++..++.+.+|+.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~ 189 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEP 189 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCc
Confidence 1110 1112346667788999999999986543 2356778888887754
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=1.2e-07 Score=95.42 Aligned_cols=102 Identities=17% Similarity=0.024 Sum_probs=77.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHH------------HHHhCCCcccccccccccCCC---CCc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQF------------ALERGIPAYLGVLGTKRLPYP---SRS 278 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~------------a~~rg~~~~~~~~d~~~lpf~---~~s 278 (617)
.+||+.|||.|.-+.+|+++ .|+|+|+|+..+..+..+. ...++..+.+.++|+..++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 58999999999999999987 4999999998776653211 112356788889999888742 268
Q ss_pred ccccccccccccccccc-ceEEEEecccccCCceeeecCh
Q 007128 279 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 279 FDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
||+|+-..+++++.++. .++.+.+.++|+|||.+++...
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 99988665655554432 4599999999999999888643
No 178
>PRK06922 hypothetical protein; Provisional
Probab=98.26 E-value=5.5e-08 Score=109.99 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeecc----c-ccchhhhhhhccc-CC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRG----L-IGSIHNWCEAYST-YP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rg----l-~~~~~~~~e~~~~-~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.|++.+.++. . +-.++.-+..++. ++ ++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~---kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDK---RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46999999999999888764 33 6777774 57777766542 1 1111111233442 33 89999998887
Q ss_pred hhhhhh---------cCCCcccchhhccccccCcceEEEecC
Q 007128 530 FSDIEK---------RGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 530 ~~~~~~---------~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++++.. ...++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 775421 112567899999999999999999985
No 179
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.26 E-value=3.6e-07 Score=91.71 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=63.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.++..++........++.+|. +++++.+.++ ++ +-.++.-.+.++.-+.+||+|++..++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 46999999999999998875410114555553 3444444333 12 1111111112221137999999988887
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.. ++..+|.++.++|+|||.+++.+
T Consensus 133 ~~~----~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 133 NVP----DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cCC----CHHHHHHHHHHhccCCcEEEEEE
Confidence 554 78899999999999999998864
No 180
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.26 E-value=2.6e-07 Score=92.07 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=71.3
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~ 266 (617)
+.....+.+.|.. .++ .+|||||||+|.+++.|+.. .|+++|+.+.....|+...+.....++.+..
T Consensus 58 P~~~a~~l~~L~l------~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDL------KPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-------TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhc------CCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4455666677765 444 79999999999999888763 3789999886666666444433333577777
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+|...---....||.|++..+.. ..-..+.+.|++||++++-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~-------~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVP-------EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBS-------S--HHHHHTEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeeccc-------hHHHHHHHhcCCCcEEEEE
Confidence 77654333456899999876532 1224477889999999984
No 181
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.24 E-value=3.5e-07 Score=101.11 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=82.1
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC----CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP----YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp----f~~~sFDlV~~ 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+ ++.+..+|+..++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE-NAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH-HHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 368999999999998888753 48999999988877764 4444555 4677778887765 44678999985
Q ss_pred c----c-cccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 285 S----R-CRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 285 s----~-~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
. . ..++..++ ...+|.++.++|||||++++++-..++...+ ..+..++++.
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene-----~~v~~~l~~~ 403 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE-----AQIEQFLARH 403 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHH-----HHHHHHHHhC
Confidence 2 1 11111111 1357899999999999999886555433322 3455555543
No 182
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.24 E-value=1e-07 Score=96.16 Aligned_cols=95 Identities=13% Similarity=0.284 Sum_probs=67.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh--hhhhhcc-cCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH--NWCEAYS-TYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~--~~~e~~~-~~p~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.++..|++.+. +++.+|. ++++..+.++ ++...++ +. +.++ ..+.+||+|++..++.
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTA-EELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH-HHhhhhcCCCccEEEEhhHhh
Confidence 3599999999999999998765 4666663 4555554443 2211111 22 2222 1238999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|.. +...+|.++.++|+|||.+++...
T Consensus 126 ~~~----~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVP----DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccC----CHHHHHHHHHHHcCCCcEEEEEec
Confidence 775 678899999999999999999764
No 183
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.23 E-value=1.9e-07 Score=97.43 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=68.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++. .+...++. +.+..+|... ++++++||+|+++--.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999998888753 59999999988887774 44444443 6677777644 34545899999862110
Q ss_pred ------------cccc------------ccceEEEEecccccCCceeeecC
Q 007128 290 ------------DWLQ------------RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 ------------h~~~------------~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.+ ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1100 11235677888999999999854
No 184
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.23 E-value=1.6e-07 Score=104.14 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=80.3
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~---- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+.+.|+. +.+...|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 368999999999887776642 5999999999888776 444555653 677778877765 5578999984
Q ss_pred cc-ccc------cccc----------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 285 SR-CRI------DWLQ----------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 285 s~-~l~------h~~~----------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
+. ..+ .|.. ....+|.++.++|||||++++++-...+...+ ..+..+++.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene-----~~v~~~l~~ 395 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE-----LQIEAFLQR 395 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH-----HHHHHHHHh
Confidence 21 111 1111 11247999999999999999987655443322 334555554
No 185
>PTZ00146 fibrillarin; Provisional
Probab=98.21 E-value=3.2e-07 Score=95.27 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=80.9
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-C----CceEEEeec-ccccchhhhhhhc--ccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-P----NTLKLIYDR-GLIGSIHNWCEAY--STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~----~~l~~~~~r-gl~~~~~~~~e~~--~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|+++..|++.-..-..|..+|. + ++++.+.+| +++..+.|...+. .....+||+|.++....+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence 6999999999999999986210012444443 2 366666554 4544444543221 112268999987654221
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
+...++.|+.|+|||||+|+|.-... +-+++ +.++..+++.+ ++++ .++. +.+..+++
T Consensus 215 ------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~-e~v~--L~Py-~~~h~~v~ 283 (293)
T PTZ00146 215 ------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPK-EQLT--LEPF-ERDHAVVI 283 (293)
T ss_pred ------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceE-EEEe--cCCc-cCCcEEEE
Confidence 22346679999999999999942211 12234 66777788876 5665 5554 23344555
Q ss_pred EEec
Q 007128 602 VQKK 605 (617)
Q Consensus 602 ~~K~ 605 (617)
++++
T Consensus 284 ~~~~ 287 (293)
T PTZ00146 284 GVYR 287 (293)
T ss_pred EEEc
Confidence 5553
No 186
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.20 E-value=2.1e-07 Score=95.99 Aligned_cols=105 Identities=20% Similarity=0.354 Sum_probs=75.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhC------CCcccccccc------cccCCCCCcc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERG------IPAYLGVLGT------KRLPYPSRSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg------~~~~~~~~d~------~~lpf~~~sF 279 (617)
+..+||+|||-|.-+.....+ .++++||+...+.+++.+.-.-++ .++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 467999999999765555444 578999998888877755432211 2356666663 3456677679
Q ss_pred ccccccccccccc-ccc---ceEEEEecccccCCceeeecChhhh
Q 007128 280 ELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 280 DlV~~s~~l~h~~-~~~---~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
|+|-|-+|+ |+. ... ..+|.++.+.|||||+|+-+.|...
T Consensus 198 DivScQF~~-HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 198 DIVSCQFAF-HYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred ceeeeeeeE-eeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 999998884 542 221 3499999999999999999988764
No 187
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.18 E-value=2.3e-07 Score=97.96 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=69.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 57999999999999888764 5999999998888877 34444454 36677777643 23456899999862110
Q ss_pred ------------ccccc------------cceEEEEecccccCCceeeecC
Q 007128 290 ------------DWLQR------------DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 ------------h~~~~------------~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.+. ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 00000 0235678889999999999853
No 188
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.18 E-value=9.2e-07 Score=90.73 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=75.5
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCC-CCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPY-PSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf-~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++.+ +...+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 47999999999998887653 589999999888777633 33333 3456666543 221 135799999863211
Q ss_pred cc-----cc----------------c----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DW-----LQ----------------R----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~-----~~----------------~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.. .+ + ...++..+.++|+|||++++..... . -.++..+++..||+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~-----~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----Q-----APLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----h-----HHHHHHHHHHCCCCc
Confidence 10 00 0 0135566779999999999864321 1 245777778888753
No 189
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.17 E-value=3.8e-07 Score=91.19 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=66.5
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc-CCcchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST-YPRTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~-~p~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..+++.+.. ++.+|. +.++..+.++ ++ +.....-.+.++. .+.+||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 346999999999999999877653 555553 4454444332 11 1111111122221 24899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.|.. ++..+|.++.++|+|||.+++...
T Consensus 123 ~~~~----~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP----DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC----CHHHHHHHHHHhcCCCcEEEEEec
Confidence 8776 778999999999999999998764
No 190
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.17 E-value=1.2e-07 Score=94.38 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred hhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchh-hhhhhcccCC-cchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIH-NWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
...|||+|||+|.++..|++. +. +++.+|. +++++.|.++.- +..++ +..+ .++ ++||+|.+..++.|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~---~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFD---PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccC---CCCCCCEEEEEECChhhh
Confidence 346999999999999999875 34 5777774 678887766421 11111 2222 233 89999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. .-++..++.||.|++ +++++|.+-
T Consensus 118 l~--p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 IN--PDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CC--HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 84 226789999999998 578888764
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.17 E-value=1.2e-07 Score=100.78 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=68.7
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH------hC----CCcccccccccc------cCC
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE------RG----IPAYLGVLGTKR------LPY 274 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~------rg----~~~~~~~~d~~~------lpf 274 (617)
+..+|||+|||-|.-+...... .++|+|++...+.+|+.+...- +. ..+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4579999999988655444443 5889999999888887665221 11 234445555432 222
Q ss_pred CCCcccccccccccccccccc---ceEEEEecccccCCceeeecChhh
Q 007128 275 PSRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
....||+|.|-+++|+..... ..+|..+...|+|||+|+.+.|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999998855544443 249999999999999999998766
No 192
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.14 E-value=1.8e-07 Score=92.30 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=70.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh----hhhhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH----NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~----~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
..|||+|||+|.++..++..-.....|+.+|. +.+++.+.++ |+...+. +..+.++.++..||+|.+...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 36999999999999887653111124666664 5666654433 3211111 221222233468999886331
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~w~~ 580 (617)
..++..++.++.|+|||||.+++. -+.+.+.++...++.++++.
T Consensus 121 ------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 121 ------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred ------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 125677999999999999999883 23445667777777777643
No 193
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.13 E-value=6e-07 Score=86.32 Aligned_cols=95 Identities=16% Similarity=0.034 Sum_probs=65.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..++++ .++++|+++.++..++..... ..++.+..+|+..+++++.+||.|+++.- ++...
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~~~ 91 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNIST 91 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCC-cccHH
Confidence 58999999999999999876 589999998776665533321 23567788899999888778999987632 33322
Q ss_pred c-cceEEEEecccccCCceeeec
Q 007128 294 R-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 ~-~~~~L~el~RvLrPGG~lvis 315 (617)
. ...++.+. .+.++|.+++.
T Consensus 92 ~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 92 PILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred HHHHHHHhcC--CCcceEEEEEE
Confidence 1 12233322 24588888874
No 194
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.12 E-value=1.5e-07 Score=92.54 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=61.1
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~ 537 (617)
+|||+|||+|.++..|++. +. ++..+|. ++++..+.++++--...+..+.++.++ ++||+|.++.+|+|+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 6999999999999999764 33 3445553 566666656664211122222233344 8999999999999887
Q ss_pred CCcccchhhccccccCc
Q 007128 538 CSGEDLLLEMDRILRPT 554 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPg 554 (617)
++..+|.||.|+++++
T Consensus 90 -d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 -NPEEILDEMLRVGRHA 105 (194)
T ss_pred -CHHHHHHHHHHhCCeE
Confidence 7889999998888764
No 195
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.5e-06 Score=85.86 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTK 270 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~ 270 (617)
....+.+.|.. .. +.+|||||||+|..++-|++. .|++++..+.-...|+.++.. .|. ++.+.++|..
T Consensus 60 ~vA~m~~~L~~------~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-lg~~nV~v~~gDG~ 130 (209)
T COG2518 60 MVARMLQLLEL------KP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-LGYENVTVRHGDGS 130 (209)
T ss_pred HHHHHHHHhCC------CC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-cCCCceEEEECCcc
Confidence 33455666655 33 379999999999999998875 688888877555555533332 344 6777777754
Q ss_pred ccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 271 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.---+...||.|++..+.-.. =..+.+.|+|||++++-
T Consensus 131 ~G~~~~aPyD~I~Vtaaa~~v-------P~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAAPEV-------PEALLDQLKPGGRLVIP 168 (209)
T ss_pred cCCCCCCCcCEEEEeeccCCC-------CHHHHHhcccCCEEEEE
Confidence 432244789999976553222 23456789999999984
No 196
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.11 E-value=6.2e-07 Score=98.95 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=74.4
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCcccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAHCS-- 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~~s-- 285 (617)
+.+|||+|||+|..+.++++. .|+++|+++.++..++. .+.+.|++ +.+...|...++ +.+++||.|++.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 368999999999888777653 59999999988887774 44455654 567778877766 456789999852
Q ss_pred ---cccccccc----------------ccceEEEEecccccCCceeeecChhhh
Q 007128 286 ---RCRIDWLQ----------------RDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 286 ---~~l~h~~~----------------~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
...+...+ ....+|.++.+.|||||++++++-...
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 11111101 112468899999999999999865543
No 197
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.11 E-value=2.3e-07 Score=95.92 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=73.5
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccc---
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCS--- 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s--- 285 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++.+. ...++ ++.+...|...++...+.||.|++.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 368999999999988777653 4899999998887776433 34454 4567777777766555679999852
Q ss_pred -c-cccc--------ccc--------ccceEEEEecccccCCceeeecChhhhc
Q 007128 286 -R-CRID--------WLQ--------RDGILLLELDRLLRPGGYFAYSSPEAYA 321 (617)
Q Consensus 286 -~-~l~h--------~~~--------~~~~~L~el~RvLrPGG~lvis~p~~~~ 321 (617)
. ..+. +.. ....+|.++.++|||||+++.++-...+
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 1111 100 1123888899999999999998655443
No 198
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.11 E-value=1.9e-07 Score=97.68 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=79.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh-hhhhhcccCCcchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH-NWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
..|||+|||+|.+|.+-++.|.- .|+.+|. +..++.|.+. |+-..+. ...+++.. ..||+|.|+-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH-
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH-
Confidence 38999999999888777777662 3555553 4444444333 4322111 01122222 99999999877772
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+..++-.+.+.|+|||++|++--.. -.++|.+.++. +|+.+.... .+.=..|+++|+
T Consensus 238 ------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~--------~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE--------EGEWVALVFKKK 295 (295)
T ss_dssp ------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE--------ETTEEEEEEEE-
T ss_pred ------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE--------ECCEEEEEEEeC
Confidence 3457788999999999999987765 44567777776 888752332 245678888875
No 199
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7e-07 Score=92.86 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=76.8
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC--cchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
+-++|||+|||+|.++.+.++.|.. .|+.+|. +-.++.+++. |+-...+.-.-.....+ ..||+|.|+-+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 4568999999999999999998773 3666664 4555555554 22111121111112233 599999996633
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~ 581 (617)
. . +..+.-++.|.|||||++|++--.+ ..+.+.+.+.+-+|+.+
T Consensus 240 ~-v------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 240 E-V------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred H-H------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEe
Confidence 3 2 2457788999999999999998654 34457777777788885
No 200
>PLN02366 spermidine synthase
Probab=98.08 E-value=2e-06 Score=90.63 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=67.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCccccccccccc--CCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKRL--PYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~l--pf~~~sFDlV~~ 284 (617)
.++||+||||.|.++..++++ +|+.+|+++..+..++..+... ....+.+..+|.... ..+++.||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 468999999999999988875 4677888887666665433221 123466666775332 123568999997
Q ss_pred cccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 285 SRCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 285 s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
... .++... ...+++.+.++|+|||.++.-..
T Consensus 172 D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 172 DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 532 222111 02468889999999999987543
No 201
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.07 E-value=6.8e-07 Score=99.10 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=70.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSR- 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~- 286 (617)
.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+.+.++ ++.+..+|+..++ ++ ++||+|++.-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 68999999999998887753 4899999998877776 34444554 3677777876653 33 6899998631
Q ss_pred ----cccc------cccc----------cceEEEEecccccCCceeeecChhh
Q 007128 287 ----CRID------WLQR----------DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 287 ----~l~h------~~~~----------~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
..+. |... ...+|.++.++|||||.+++++-..
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1010 0000 0236888999999999999875443
No 202
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.06 E-value=2.2e-07 Score=97.95 Aligned_cols=103 Identities=14% Similarity=0.290 Sum_probs=67.3
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEee----cccccchhhhhhhcc--cCCcchhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYD----RGLIGSIHNWCEAYS--TYPRTYDLLH 525 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~----rgl~~~~~~~~e~~~--~~p~tfDlvh 525 (617)
++....+.|||+|||+|.++..++++ ++ +++.+|.+.+++.+.+ .|+-..++..+.++. .+| .+|+|.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~---~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~ 220 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVL 220 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC---EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEE
Confidence 34455678999999999999999876 23 4555555556554433 344222222223322 234 479988
Q ss_pred hhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 526 AWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 526 ~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
..+++++.... ....+|.++.|.|||||.++|.|.
T Consensus 221 ~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77777643211 235799999999999999999875
No 203
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.06 E-value=1.7e-06 Score=89.75 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=65.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
+++||+||||+|.++..+++. .++++|+++..++.++..+.... ...+.+...|... +...+++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 358999999999988877654 48888998877766654332211 1234444455432 22224689999975
Q ss_pred ccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 286 RCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 286 ~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
.. .+.... ...+++.+.++|+|||.+++...
T Consensus 153 ~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 153 ST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred CC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 43 222111 12456789999999999998743
No 204
>PHA03411 putative methyltransferase; Provisional
Probab=98.06 E-value=1.1e-06 Score=90.54 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.+ .|+++|+++.++..++ ++..++.+..+|+..+.. +.+||+|+++-.+.+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar-----~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK-----RLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 48999999999988777553 5889999886654443 333356677788776653 4689999997664442
Q ss_pred ccc-------------------cceEEEEecccccCCceeeec--ChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 292 LQR-------------------DGILLLELDRLLRPGGYFAYS--SPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 292 ~~~-------------------~~~~L~el~RvLrPGG~lvis--~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
... ....+..+.++|+|+|.+.+. ..+.|+-. -. -+++.+++++.||..
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s-l~---~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT-MK---SNKYLKWSKQTGLVT 209 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc-CC---HHHHHHHHHhcCcEe
Confidence 111 012446667888999977654 22222111 11 167889999999954
No 205
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.05 E-value=7e-07 Score=89.04 Aligned_cols=115 Identities=18% Similarity=0.092 Sum_probs=75.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchh-------hhhhhcccCCcchhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIH-------NWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~-------~~~e~~~~~p~tfDlvh~~~ 528 (617)
..-|.++|+|||+|--+..+++.-- +|+++|- +.||++|...=-+...| +-.+++..-++|.|||.|.+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3445799999999944445555433 7888884 79999876553322222 21123332269999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcc-eEE---EecChhHHHHHHHhhhhcccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTG-FVI---IRDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG-~~i---i~~~~~~~~~~~~~~~~~~w~ 579 (617)
.++- ||++.++.++.|||||.| .+. .+|.....-+.-++..+++|+
T Consensus 109 a~HW-----Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AVHW-----FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hHHh-----hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 9984 489999999999999977 442 232333334455555555553
No 206
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.05 E-value=2.6e-07 Score=90.97 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=72.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcc--cCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYS--TYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~--~~p-~tfDlvh~~~~ 529 (617)
..|||+|||+|.++..|+.+.-. .+|+.+|. +.++..|..+ |+ +-.++.-...++ .+| .+||.|+.+.-
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 46999999999999999976211 26666664 5666555432 32 111111111111 134 68999986532
Q ss_pred hhhhh----hcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhcc-cccc
Q 007128 530 FSDIE----KRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALN-WEAV 581 (617)
Q Consensus 530 ~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~-w~~~ 581 (617)
.++.. ..+...+.+|.++.|+|||||.|++... ....+++.+.+.... |+.+
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 22111 1334446799999999999999987654 445666666655543 6653
No 207
>PRK04457 spermidine synthase; Provisional
Probab=98.03 E-value=6.8e-07 Score=92.31 Aligned_cols=116 Identities=15% Similarity=0.221 Sum_probs=74.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-CCCcccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-GIPAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~ 267 (617)
.|.+.+...+.. . ..+++|||||||+|.++..++.. .++++|+++..++.++..+.... ..++.+..+
T Consensus 52 ~y~~~m~~~l~~------~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~ 124 (262)
T PRK04457 52 AYTRAMMGFLLF------N-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA 124 (262)
T ss_pred HHHHHHHHHHhc------C-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC
Confidence 466666444432 1 22368999999999999888654 58999999987776664433221 234666777
Q ss_pred ccccc-CCCCCccccccccccc-ccccc--ccceEEEEecccccCCceeeec
Q 007128 268 GTKRL-PYPSRSFELAHCSRCR-IDWLQ--RDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 d~~~l-pf~~~sFDlV~~s~~l-~h~~~--~~~~~L~el~RvLrPGG~lvis 315 (617)
|.... +-..++||+|++...- ..... ....+++++.++|+|||.+++.
T Consensus 125 Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 125 DGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 75432 2223689999864210 01110 0135788999999999999984
No 208
>PRK01581 speE spermidine synthase; Validated
Probab=98.02 E-value=1.1e-06 Score=93.85 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=84.9
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHH--H--HH---hCCC
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQF--A--LE---RGIP 261 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~--a--~~---rg~~ 261 (617)
.|.+.+.+..-. .....++||+||||+|..+..+++. .|+++|+++.+++.|+.-. . .. ....
T Consensus 135 iYHE~Lvhp~m~------~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR 208 (374)
T PRK01581 135 IYHEALVHPIMS------KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR 208 (374)
T ss_pred HHHHHHHHHHHH------hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc
Confidence 566776653322 1223468999999999988888764 4888999887776665210 0 00 1235
Q ss_pred cccccccccc-cCCCCCccccccccccccccccc-----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHH
Q 007128 262 AYLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSA 335 (617)
Q Consensus 262 ~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~ 335 (617)
+.+...|+.. ++-.++.||+|++... -..... ...+++.+.+.|+|||++++........ ...+..+.+
T Consensus 209 V~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~----~~~~~~i~~ 283 (374)
T PRK01581 209 VNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA----PLVYWSIGN 283 (374)
T ss_pred eEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh----HHHHHHHHH
Confidence 6666777655 3444568999997631 111000 0237788999999999998864322111 122234566
Q ss_pred HHHHhhhh
Q 007128 336 LVERMCWR 343 (617)
Q Consensus 336 l~~~~gf~ 343 (617)
.+++.++.
T Consensus 284 tL~~af~~ 291 (374)
T PRK01581 284 TIEHAGLT 291 (374)
T ss_pred HHHHhCCc
Confidence 66766663
No 209
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.02 E-value=3.8e-07 Score=91.49 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=68.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..|++.+. .|+.+|. +++++.|.++- +...++....+++..+.+||+|.+..++.|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 35799999999999999998776 4667774 67777776552 1112222223344334899999999999875
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
... ++..++.++.+++++++.+.+...
T Consensus 141 ~~~--~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 PQE--DAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CHH--HHHHHHHHHHhhcCCeEEEEECCc
Confidence 422 567889999998876666555443
No 210
>PRK03612 spermidine synthase; Provisional
Probab=97.98 E-value=2.4e-06 Score=96.51 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=80.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhH--HHH-H----hCCCcccccccccc-cCCCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQ--FAL-E----RGIPAYLGVLGTKR-LPYPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~--~a~-~----rg~~~~~~~~d~~~-lpf~~~sFDlV 282 (617)
.++|||||||+|..+..++++ .|+++|+++.+++.++.. +.. . ...++++...|... +...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 468999999999999887754 588899988877766631 111 0 11345666677654 23334689999
Q ss_pred ccccccccccccc-----ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 283 HCSRCRIDWLQRD-----GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
++... .+..... ..+++.+.+.|+|||.+++........ .+.+.++.+.+++.||
T Consensus 378 i~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 378 IVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCC
Confidence 97643 2221111 135678899999999999865333222 2234567778888888
No 211
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=1.8e-06 Score=87.67 Aligned_cols=128 Identities=17% Similarity=0.247 Sum_probs=86.5
Q ss_pred hhccccCccchhhHHHhhhcchhhHhhhcCC-c-eEEEEeecCCC-CCceEEEee----ccc---c----cchhhhhhhc
Q 007128 449 LLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-D-VWVMSVVPEDG-PNTLKLIYD----RGL---I----GSIHNWCEAY 514 (617)
Q Consensus 449 ~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~-~~v~~v~~~~~-~~~l~~~~~----rgl---~----~~~~~~~e~~ 514 (617)
+|+..+.......|||+|||.|..+-.|+++ . + -|+.++. +.+.+.|.+ .++ | +++..|...+
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 3444344444778999999999999999987 3 4 3444443 222222211 112 3 3333444433
Q ss_pred ccCCcchhhhhhhhhhh----------h----hhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 515 STYPRTYDLLHAWTVFS----------D----IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 515 ~~~p~tfDlvh~~~~~~----------~----~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.. .+||+|.|+==|- + -+.-.|++++++.=-.++|||||++.+-.+++-+.++-.++++++|..
T Consensus 112 ~~--~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 112 VF--ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEP 189 (248)
T ss_pred cc--cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCc
Confidence 32 6799997643221 1 113568889999999999999999999999999999999999999997
Q ss_pred c
Q 007128 581 V 581 (617)
Q Consensus 581 ~ 581 (617)
.
T Consensus 190 k 190 (248)
T COG4123 190 K 190 (248)
T ss_pred e
Confidence 3
No 212
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.97 E-value=1.7e-06 Score=89.23 Aligned_cols=136 Identities=20% Similarity=0.340 Sum_probs=82.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec---cc---ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR---GL---IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r---gl---~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|+...- ...|+.+|. +.+++.+.++ +. +-.++ ++.+++. +++||+|.++--+.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~ 186 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYI 186 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCcC
Confidence 3699999999999999987531 114556663 4555554443 11 11111 2222221 27899998742111
Q ss_pred ----------hhhhcC------------CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCC
Q 007128 532 ----------DIEKRG------------CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASS 589 (617)
Q Consensus 532 ----------~~~~~~------------c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 589 (617)
.+..+. -....++.++.++|+|||++++.......+.++.++...+|..+....| .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d--~ 264 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD--L 264 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC--C
Confidence 000000 0124677888899999999999776666677899999888876522223 2
Q ss_pred CCCCCCCeEEEEEEe
Q 007128 590 DSDKDGDEVVFIVQK 604 (617)
Q Consensus 590 ~~~~~~~~~~l~~~K 604 (617)
.+.+++++++|
T Consensus 265 ----~~~~r~~~~~~ 275 (275)
T PRK09328 265 ----AGRDRVVLGRR 275 (275)
T ss_pred ----CCCceEEEEEC
Confidence 45678888765
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.96 E-value=1.9e-06 Score=83.77 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=84.3
Q ss_pred eCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhh
Q 007128 174 KGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 174 ~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~ 251 (617)
..+..-|.|.|.||--..++|.+ +|.+.. -..+....++||+|+|.|.++..++.. .|.+.++|..|...
T Consensus 78 ~TdING~lgrGsMFifSe~QF~k----lL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-- 149 (288)
T KOG3987|consen 78 QTDINGFLGRGSMFIFSEEQFRK----LLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-- 149 (288)
T ss_pred hhccccccccCceEEecHHHHHH----HHhcCC--CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH--
Confidence 34555677888999888776644 333311 114455679999999999999999886 68888887765432
Q ss_pred hHHHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccC-Cceeeec
Q 007128 252 IQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFAYS 315 (617)
Q Consensus 252 ~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrP-GG~lvis 315 (617)
-...+.++ ......--.+-+||+|.|.+.+ .-..++..+|+.++.+|+| +|.++++
T Consensus 150 ---L~kk~ynV----l~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 150 ---LKKKNYNV----LTEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ---HhhcCCce----eeehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 22333332 2222222233469999998764 4444557899999999999 8988874
No 214
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.96 E-value=4.8e-07 Score=81.13 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=58.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh----cccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA----YSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~----~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..+++..-- ..|+.+|. +.+++.+.++ ++ ..+...+.+ ....+.+||.|.+....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCcc
Confidence 47999999999999999875211 24566663 4555444321 22 111111111 11223789999875544
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
. ....++.++.|+|||||+|++.
T Consensus 99 ~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 3 2357899999999999999985
No 215
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.96 E-value=4.6e-07 Score=90.71 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=60.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-eecccc--------------cchhhhhhhcccCC----c
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-YDRGLI--------------GSIHNWCEAYSTYP----R 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-~~rgl~--------------~~~~~~~e~~~~~p----~ 519 (617)
.+|||+|||.|.-+.+|+++|. +|+.+|. +..++.+ .+.|+- ..+.-.+.++..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3799999999999999999988 5666663 3333321 112220 01222334443333 4
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceE
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ 557 (617)
+||+|....+|.|+.. ...+..+..|.+.|||||++
T Consensus 113 ~fD~i~D~~~~~~l~~--~~R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 113 PVDAVYDRAALIALPE--EMRQRYAAHLLALLPPGARQ 148 (213)
T ss_pred CcCEEEechhhccCCH--HHHHHHHHHHHHHcCCCCeE
Confidence 6888887777777642 24567899999999999963
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.94 E-value=1.4e-06 Score=90.81 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=79.4
Q ss_pred CccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccc----ccccccccc--------hhhhhccCCCccchhh
Q 007128 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVA----SFGAYLLSS--------DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 184 ~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G----~~~~~L~~~--------~V~gvDis~~dl~~a~ 251 (617)
.|.|.+...++ +.+.+.+.. .. ..-+|+..||++| +++..|.+. .|+|+|++...++.|+
T Consensus 93 eT~FFRd~~~f-~~L~~~~~~------~~-~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 93 LTAFFREAHHF-PILAEHARR------RS-GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred CCCccCCcHHH-HHHHHHHHh------cC-CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 34555655555 334333321 11 2368999999999 444444331 4888899888777665
Q ss_pred hHHHH---HhC----------------------------CCcccccccccccCCC-CCccccccccccccccccc-cceE
Q 007128 252 IQFAL---ERG----------------------------IPAYLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR-DGIL 298 (617)
Q Consensus 252 ~~~a~---~rg----------------------------~~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h~~~~-~~~~ 298 (617)
...=. -++ -.+.|...|....+++ .+.||+|+|.++++++... ...+
T Consensus 165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~v 244 (287)
T PRK10611 165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERI 244 (287)
T ss_pred hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHH
Confidence 32100 000 0134555666554443 5789999999998877443 2469
Q ss_pred EEEecccccCCceeeecC
Q 007128 299 LLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 299 L~el~RvLrPGG~lvis~ 316 (617)
+..+.+.|+|||+|++..
T Consensus 245 l~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHhCCCcEEEEeC
Confidence 999999999999998853
No 217
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.93 E-value=1.9e-07 Score=92.46 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=80.6
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
...++||.|+|.|..+..|+-. .|..+|..+..+..|+........-...+.+...+++..+.++||+|.+-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999877654 4555666665555554332222222234444556666545679999999999887
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhh-------cCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAY-------AQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~-------~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
..++. ..+|+.+...|+|+|++++-..... ..+....+.-+.+.++++++|++++..+
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 76543 4699999999999999998432221 1111111222678999999999887654
No 218
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=7.4e-07 Score=89.52 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=63.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-eecccc--------------cchhhhhhhcccC---C-cc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-YDRGLI--------------GSIHNWCEAYSTY---P-RT 520 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-~~rgl~--------------~~~~~~~e~~~~~---p-~t 520 (617)
+|||+|||.|.-+.+|+++|. +|+++|. +..++.+ .++|+. ..++-++.++..+ + .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999988 5666663 3433322 234441 1122234444333 2 57
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
||+|....+|.|+.. ......+..|.++|||||+++
T Consensus 117 fd~v~D~~~~~~l~~--~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 117 VDAVYDRAALIALPE--EMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred eeEEEehHhHhhCCH--HHHHHHHHHHHHHcCCCCeEE
Confidence 899988888887742 245688999999999999643
No 219
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.91 E-value=1.1e-06 Score=89.34 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=76.3
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccCC-cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STYP-RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~p-~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..+++. +. +++.+|. +.+++.+.++ |+ ..++-.+.++ ..++ ++||+|.++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcCCceeEEEECCCC
Confidence 36999999999999999975 33 4556663 4555544332 32 1111111111 2233 889999874322
Q ss_pred h------hhhhcCC----------------CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 531 S------DIEKRGC----------------SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~------~~~~~~c----------------~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
. ++..... ....++.++.|+|+|||.+++.......++++++++..+|+.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 1 1100000 1236788999999999999999887777889999999999876
No 220
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=2.5e-05 Score=77.00 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=61.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~ 540 (617)
.|=|+|||-+.+|.++. .+..|.+..-+...+.+-. .++.. .|+++ .+.|++.+-..+. ..|+
T Consensus 75 viaD~GCGdA~la~~~~-~~~~V~SfDLva~n~~Vta-------cdia~--vPL~~--~svDv~VfcLSLM-----GTn~ 137 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP-NKHKVHSFDLVAPNPRVTA-------CDIAN--VPLED--ESVDVAVFCLSLM-----GTNW 137 (219)
T ss_dssp -EEEES-TT-HHHHH---S---EEEEESS-SSTTEEE-------S-TTS---S--T--T-EEEEEEES--------SS-H
T ss_pred EEEECCCchHHHHHhcc-cCceEEEeeccCCCCCEEE-------ecCcc--CcCCC--CceeEEEEEhhhh-----CCCc
Confidence 49999999999998865 3445555555443222111 11111 22222 9999988655555 2288
Q ss_pred ccchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccc
Q 007128 541 EDLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~ 581 (617)
.+.|.|-.|||||||.++|.+-.+ ..+.-.+.+++++++..
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999877 34455567888999984
No 221
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.88 E-value=8.9e-07 Score=87.44 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=69.2
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cC--CCCCcccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LP--YPSRSFELAHCSRCRI 289 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lp--f~~~sFDlV~~s~~l~ 289 (617)
.+||||||.|.+...++.. +++|+|+...-+..+..+.......++.+..+|+.. ++ ++++++|.|+..+- -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 7999999999999999875 689999998877777644444444467787777665 22 56689999986543 3
Q ss_pred cccccc--------ceEEEEecccccCCceeeecC
Q 007128 290 DWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
+|.... ..++.++.++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333221 248899999999999999864
No 222
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.85 E-value=2.6e-06 Score=92.59 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=86.3
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.++ |+ +-.++ |+.+....-..+||+|.|+-=+-
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a---~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA---FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 6999999999999988753 33 5666664 6777666554 22 11111 33222110125799998743110
Q ss_pred -----h-------------hhhcCC---CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCC
Q 007128 532 -----D-------------IEKRGC---SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSD 590 (617)
Q Consensus 532 -----~-------------~~~~~c---~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 590 (617)
+ +..... .+..++.+..+.|+|||++++-...+--+.+++++...+|+.+....| .
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l- 407 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--L- 407 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--C-
Confidence 0 000000 122566777889999999999888888889999999999987633434 2
Q ss_pred CCCCCCeEEEEEEe
Q 007128 591 SDKDGDEVVFIVQK 604 (617)
Q Consensus 591 ~~~~~~~~~l~~~K 604 (617)
.+.++++++++
T Consensus 408 ---~G~dR~v~~~~ 418 (423)
T PRK14966 408 ---AGLDRVTLGKY 418 (423)
T ss_pred ---CCCcEEEEEEE
Confidence 56788988876
No 223
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.84 E-value=3.4e-06 Score=88.07 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=86.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc---ccch-hhhhhhcccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSI-HNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~-~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|.++.+|+.. +. .|+.+|. +.++++|.+. |+ +-.+ .++.++++. ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~---~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA---EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999874 23 5666664 5666655543 22 1111 244443321 4899998741
Q ss_pred -------------hhhhhh-----h---cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhh-hccccccccccc
Q 007128 529 -------------VFSDIE-----K---RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLR-ALNWEAVATTAD 586 (617)
Q Consensus 529 -------------~~~~~~-----~---~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 586 (617)
++.|-. . ..-.+..++.+..++|+|||++++-.....-+.+++++. ..+|..+....|
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 111100 0 000234688899999999999999888887788888887 578876523333
Q ss_pred CCCCCCCCCCeEEEEEEe
Q 007128 587 ASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 587 ~~~~~~~~~~~~~l~~~K 604 (617)
. .+.++++++++
T Consensus 271 --~----~g~~R~~~~~~ 282 (284)
T TIGR00536 271 --L----NGKERVVLGFY 282 (284)
T ss_pred --C----CCCceEEEEEe
Confidence 2 55788888875
No 224
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.9e-06 Score=82.55 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=82.6
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-C-cccccccccccCCCCCccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-P-AYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~-~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
++.+|||.|.|+|.++.+|+.. .|++.|+-+.....|+.++.. .++ + +.+...|+...-+++ .||+|+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~--- 168 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVF--- 168 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEE---
Confidence 3479999999999999999852 588888887666666644333 233 2 666677877766665 899997
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+...+ +..++..+..+|+|||.+++-.|..... +.....++..||..+..
T Consensus 169 --LDmp~-PW~~le~~~~~Lkpgg~~~~y~P~veQv--------~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 169 --LDLPD-PWNVLEHVSDALKPGGVVVVYSPTVEQV--------EKTVEALRERGFVDIEA 218 (256)
T ss_pred --EcCCC-hHHHHHHHHHHhCCCcEEEEEcCCHHHH--------HHHHHHHHhcCccchhh
Confidence 33333 4679999999999999999976665311 23334445558865543
No 225
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.80 E-value=2.4e-06 Score=86.13 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=77.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC---CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
..+||||||.|.+...+|++ +++||++...-+..+. +.+.+.++ ++.+...|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999986 5899999887776665 66777888 8888888876542 45569999986654
Q ss_pred cccccccc--------ceEEEEecccccCCceeeecC
Q 007128 288 RIDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
-+|+... ..+++.+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 3454332 238889999999999999975
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.79 E-value=2.1e-06 Score=100.39 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=70.0
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---Cccccccccccc-CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRL-PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~l-pf~~~sFDlV~~s~~l 288 (617)
++|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ .+.+..+|+.+. .-..++||+|++.--.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~-N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER-NFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 68999999999999998865 49999999999888874 4444444 367777776442 1114689999975211
Q ss_pred cc----------cccccceEEEEecccccCCceeeecC
Q 007128 289 ID----------WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h----------~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+. ...+...++..+.++|+|||.++++.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 10 01111235677889999999998864
No 227
>PRK14967 putative methyltransferase; Provisional
Probab=97.77 E-value=2.3e-06 Score=86.04 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccch-hhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSI-HNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~-~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..|||+|||+|.++..++..+. -.|+.+|. +.++..+.++ |+ +-.+ .++.+.++ +++||+|+++.-|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999999988653 25666663 4565544332 22 1111 13322222 279999998643221
Q ss_pred hhh-----------------cCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhccccc
Q 007128 533 IEK-----------------RGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~-----------------~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~ 580 (617)
... ....+..++.++.|+|||||.+++..+. ...+++...+++-+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0011456788999999999999985433 23445555555545543
No 228
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.77 E-value=5.1e-06 Score=84.38 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=65.4
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-----f~~~sFDlV 282 (617)
++|||+|||+|..+..|+.. .|+++|+++.....++. ...+.++ .+.+..+|+... + .+.++||+|
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~-n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLE-FIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 68999999999866655432 59999999987776664 3344454 356666665442 1 124689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
++..- ......++.++.++|||||.+++.
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 85421 122245778889999999999875
No 229
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.75 E-value=2e-06 Score=87.38 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=68.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||+|.|.++..++++ .++.+|+ |..+..+. + ...+.+..+|+. -++|. +|+++..+++++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H-TTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c-ccccccccccHH-hhhcc--ccceeeehhhhh
Confidence 368999999999999999876 3566666 22333332 2 446778888887 67775 999999999888
Q ss_pred ccccc-ceEEEEecccccCC--ceeeecChhh
Q 007128 291 WLQRD-GILLLELDRLLRPG--GYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPG--G~lvis~p~~ 319 (617)
|.++. ..+|+++++.|+|| |.|+|.....
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 87653 35999999999999 9999975443
No 230
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.75 E-value=2.5e-05 Score=82.76 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=60.7
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--ccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYL 264 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~ 264 (617)
+..|+..+.++|........+.+...+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++. +.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 467888888887542111123344578999999999776666543 58999999988888875444331343 223
Q ss_pred cc-cccccc----CCCCCcccccccccc
Q 007128 265 GV-LGTKRL----PYPSRSFELAHCSRC 287 (617)
Q Consensus 265 ~~-~d~~~l----pf~~~sFDlV~~s~~ 287 (617)
.. .+...+ ..+++.||+|+|+--
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCC
Confidence 21 222221 124578999999854
No 231
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.75 E-value=8.9e-06 Score=90.25 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=67.8
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc----cCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR----LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~----lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..+|+.. +++.+++||+|++.--
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 68999999999999998865 58999999999888874 4444444 47777777653 3455678999986532
Q ss_pred cccccccceEEEEecccccCCceeeecChh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.... ...+..+.+ ++|+++++++..+
T Consensus 377 --r~g~-~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 377 --RAGA-AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred --CcCh-HHHHHHHHh-cCCCeEEEEEeCh
Confidence 1111 123333333 6899999998543
No 232
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.75 E-value=2.5e-06 Score=89.91 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc------c--ccchhhhhhhcccCCcch-----hhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG------L--IGSIHNWCEAYSTYPRTY-----DLLH 525 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg------l--~~~~~~~~e~~~~~p~tf-----Dlvh 525 (617)
.+|||+|||+|.++..|++...-..+++++|. +.||+.+.++- + .+...|-.+.++ ++..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 46999999999999999876211237889995 68887776651 1 111112221111 22222 2344
Q ss_pred hhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 526 AWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 526 ~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+...|.++.. -+...+|.++.+.|+|||.|+|.-
T Consensus 144 ~gs~~~~~~~--~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTP--EEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCH--HHHHHHHHHHHHhcCCCCEEEEec
Confidence 4556665531 245678999999999999999744
No 233
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=5.3e-06 Score=86.50 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=73.9
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+|||+|||+|.++..++.. .|+++|+++..+..|+ +.+...++ ++.+...|.. -+.. ++||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 7999999999999888865 5899999998888777 56666664 2223322211 1222 489999987321111
Q ss_pred c-----c-----c--------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 292 L-----Q-----R--------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 292 ~-----~-----~--------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
. + + ...++.++.+.|+|||.+++..-.. . -+.+.+++...|+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~----q-----~~~v~~~~~~~~~ 255 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT----Q-----GEAVKALFEDTGF 255 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC----c-----HHHHHHHHHhcCC
Confidence 1 0 0 0136677888999999999852111 1 1457778888883
No 234
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.72 E-value=3.6e-05 Score=74.67 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=70.6
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCc---eEEEeecccccchhhhhhhcccCC----cchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNT---LKLIYDRGLIGSIHNWCEAYSTYP----RTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~---l~~~~~rgl~~~~~~~~e~~~~~p----~tfDlvh~ 526 (617)
++.++-.+|||+||++|||+.++.+++.....|+.+|...+ -.+-.-+|-+-.. .....+.... ..||+|.|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~-~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNP-ENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEE-EHSHHGGGSHGTTTCSESEEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchh-hHHHhhhhhccccccCcceecc
Confidence 44556688999999999999999998722234555553222 1111112221110 0111222221 58999999
Q ss_pred hhhhhhhhh----cCC---CcccchhhccccccCcceEEEecCh-----hHHHHHHHhhhhcccccccccccCCCCCCCC
Q 007128 527 WTVFSDIEK----RGC---SGEDLLLEMDRILRPTGFVIIRDKQ-----SVVDFVKKYLRALNWEAVATTADASSDSDKD 594 (617)
Q Consensus 527 ~~~~~~~~~----~~c---~~~~~l~Em~RiLrPgG~~ii~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 594 (617)
+..+.-... +.- ....+|.=+-..|||||.+|+.--. ..+..++...+..++-. +.. ..+.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K------p~~-sr~~ 170 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK------PPS-SRSE 170 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-------TT-SBTT
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE------CcC-CCCC
Confidence 884431000 000 1123344444679999988874322 34555555444444433 212 1235
Q ss_pred CCeEEEEEEe
Q 007128 595 GDEVVFIVQK 604 (617)
Q Consensus 595 ~~~~~l~~~K 604 (617)
..|.+|||++
T Consensus 171 s~E~Ylv~~~ 180 (181)
T PF01728_consen 171 SSEEYLVCRG 180 (181)
T ss_dssp CBEEEEESEE
T ss_pred ccEEEEEEcC
Confidence 6888998875
No 235
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.71 E-value=1.9e-06 Score=85.62 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccc---cchh-hhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLI---GSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~---~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.+++.|++. +. .|+.+|. +++++.+.++ |+. -.++ +..+.++. ..+||+|+++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 36999999999999888753 23 3555553 4555544432 321 1122 21122221 2789999987
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
..+.++. .|+.|+|+|||.+++-.
T Consensus 150 ~~~~~~~----------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP----------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh----------HHHHHhcCcCcEEEEEE
Confidence 7665443 47889999999999854
No 236
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.71 E-value=5.1e-06 Score=86.83 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=73.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC-cchhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP-RTYDLLHAWT-- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p-~tfDlvh~~~-- 528 (617)
.+|||+|||+|.++.+|+.. +. .|+.+|. +.+++.|.++ |+-..+...+.+ +..++ .+||+|.++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 46999999999999999975 33 5666674 5666666544 331111111111 12234 6899998751
Q ss_pred ----hhhhhhh---c--C----------CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 529 ----VFSDIEK---R--G----------CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ----~~~~~~~---~--~----------c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.+.++.. + . -....++.+..++|+|||++++-..... +++++++...+|.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCce
Confidence 1111100 0 0 0124678899999999999998776655 68888888766654
No 237
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.70 E-value=1.8e-06 Score=92.40 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=77.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----cccccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
+|||+|||+|.++..++++.-. ..|+.+|. +.+++.+.+ .++-+.++ +..-++..++.||+|.++--|++...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCcc
Confidence 5999999999999999876211 13555553 355544432 23322221 11112223589999999887764210
Q ss_pred -cCCCcccchhhccccccCcceEEEecCh--hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 536 -RGCSGEDLLLEMDRILRPTGFVIIRDKQ--SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 536 -~~c~~~~~l~Em~RiLrPgG~~ii~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
..-..+.++.++.|.|||||.++|-... ..-..+++.... .+. +.+ ..+-+|+-|+|.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~---la~-------~~~f~v~~a~~~ 337 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEV---LAQ-------TGRFKVYRAIMT 337 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEE---EEe-------CCCEEEEEEEcc
Confidence 1113468899999999999999775432 223334433332 122 222 346788888763
No 238
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.70 E-value=4.8e-06 Score=90.87 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccC--C--CCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLP--Y--PSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lp--f--~~~sFDlV~~s 285 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+.... + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 68999999999988664432 5899999998888777 44444554 3567777765531 1 24689999976
Q ss_pred ccccccc--------cccceEEEEecccccCCceeeecC
Q 007128 286 RCRIDWL--------QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 286 ~~l~h~~--------~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
--.+.-. .....++..+.++|+|||++++.+
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 3211100 011223445678999999999754
No 239
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.68 E-value=1.2e-05 Score=77.85 Aligned_cols=114 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+++|||||+|+++..++. ..|+++|-++..+...+ +.+.+.++ ++.+..+++...--...+||.|+....
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--
Confidence 46899999999999988873 25899998887766655 34444444 466666665443112227999987654
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
.....+|+.+...|||||++++..-.. +......+.+++.||
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~naitl--------E~~~~a~~~~~~~g~ 153 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAITL--------ETLAKALEALEQLGG 153 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 233568888999999999999853221 112345556677777
No 240
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.68 E-value=6e-06 Score=89.19 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe----eccc--ccchh-hhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY----DRGL--IGSIH-NWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~----~rgl--~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.|||+|||+|.|+..|+.+.-. .|++++|. +.++..+. .+|+ +-.++ |..+-+..+| +++|.|+++.-.+
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 5999999999999999976210 16666664 34443333 3344 11111 2211122344 9999998752222
Q ss_pred hhh-hc-CCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhc
Q 007128 532 DIE-KR-GCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRAL 576 (617)
Q Consensus 532 ~~~-~~-~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~ 576 (617)
... .| |-.....|.|+.|+|||||.+.++.. ....+.+.+.+...
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 100 00 11125799999999999999877544 44555555554443
No 241
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.67 E-value=1.3e-05 Score=78.94 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=61.9
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~ 529 (617)
..|||+|||+|.++..++.. +. .|+.+|. +.+++.+.++ |+ +-.++ +..+.+......+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 36999999999999888743 33 4556663 5565554432 22 11111 1111122122334555431
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRAL 576 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~ 576 (617)
...++..++.++.|+|+|||++++..... .+.++.+.++.+
T Consensus 117 ------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 117 ------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred ------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 12256789999999999999998886543 334455556554
No 242
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.66 E-value=8.9e-06 Score=80.35 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=68.5
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccc----ccccccccc---------hhhhhccCCCccchhh
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVA----SFGAYLLSS---------DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G----~~~~~L~~~---------~V~gvDis~~dl~~a~ 251 (617)
|.|.+....+......+++...... ..+..-+|+..||++| +++..|.+. .|+|+|+++..++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~-~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARA-RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhcccc-CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555444444443211111 2235578999999999 455555441 4788888887776654
Q ss_pred hHHH---HHhCC-------------------------CcccccccccccCCCCCcccccccccccccccccc-ceEEEEe
Q 007128 252 IQFA---LERGI-------------------------PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLEL 302 (617)
Q Consensus 252 ~~~a---~~rg~-------------------------~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el 302 (617)
...= .-+++ .+.|...|..+.+.+.+.||+|+|.++++.+.... ..+++.+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l 161 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRL 161 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHH
Confidence 2100 00011 13344455555333457899999999988775543 4599999
Q ss_pred cccccCCceeeecC
Q 007128 303 DRLLRPGGYFAYSS 316 (617)
Q Consensus 303 ~RvLrPGG~lvis~ 316 (617)
++.|+|||+|++..
T Consensus 162 ~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 162 HRSLKPGGYLFLGH 175 (196)
T ss_dssp GGGEEEEEEEEE-T
T ss_pred HHHcCCCCEEEEec
Confidence 99999999999964
No 243
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.65 E-value=9e-06 Score=80.09 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=85.5
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchh--hhhhhcccCCcchhhhhhhhhhh--
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIH--NWCEAYSTYPRTYDLLHAWTVFS-- 531 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~--~~~e~~~~~p~tfDlvh~~~~~~-- 531 (617)
..-+-|||||||+|--++.|.+.|- -.+.+|. +.||++|.+|-+-|.+. |--|.+|+=|.|||-+.+-++.+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 3456699999999999999998874 2455664 79999999875543322 44577886679999876433332
Q ss_pred -hhhhcCCCcc-----cchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 532 -DIEKRGCSGE-----DLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 532 -~~~~~~c~~~-----~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
+.. ..|+-. ..+.-+...|++|+..++.=.++..+.+.-|.....|.-
T Consensus 126 cnA~-~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 126 CNAD-KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG 179 (270)
T ss_pred cccC-ccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence 211 122222 346668899999999999999888888888887777765
No 244
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.65 E-value=2.9e-06 Score=89.78 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-----cch-hhh-hhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-----GSI-HNW-CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-----~~~-~~~-~e~~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++++. +|+.+|. ++|++.+.+|.- . +.. ..+ +.++...+++||+|.|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999999876 6778884 688888777631 0 000 111 12333446899999999998
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEE
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
.|+... ....++..+.++ .+||.++.
T Consensus 223 ~H~p~~--~~~~ll~~l~~l-~~g~liIs 248 (315)
T PLN02585 223 IHYPQD--KADGMIAHLASL-AEKRLIIS 248 (315)
T ss_pred EecCHH--HHHHHHHHHHhh-cCCEEEEE
Confidence 876522 233456666654 56666554
No 245
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.65 E-value=4.2e-05 Score=77.06 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred HHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcc
Q 007128 462 LMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGE 541 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~ 541 (617)
|-|+|||-+-+|.. ....|.-+.+++++.. -..-++.+ .++. ++|.|++++-..+. ..|+.
T Consensus 184 IaD~GCGEakiA~~-~~~kV~SfDL~a~~~~---------V~~cDm~~--vPl~--d~svDvaV~CLSLM-----gtn~~ 244 (325)
T KOG3045|consen 184 IADFGCGEAKIASS-ERHKVHSFDLVAVNER---------VIACDMRN--VPLE--DESVDVAVFCLSLM-----GTNLA 244 (325)
T ss_pred EEecccchhhhhhc-cccceeeeeeecCCCc---------eeeccccC--CcCc--cCcccEEEeeHhhh-----cccHH
Confidence 89999999988762 2235555666665421 00111111 1222 29999987544444 23888
Q ss_pred cchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 542 DLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 542 ~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+.+.|.+|||||||.++|.+-.+ .......-+..|+++. ...| . ...+.+|+--|+
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~--~~~d--~----~n~~F~lfefkK 303 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV--KHKD--V----SNKYFTLFEFKK 303 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee--eehh--h----hcceEEEEEEec
Confidence 99999999999999999998776 2334566678899998 3443 1 234555555443
No 246
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.63 E-value=1.9e-05 Score=87.29 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=66.2
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc----CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL----PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l----pf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..+|+... ++.+++||+|++.-..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 58999999999999999864 59999999988887774 4444444 567777786542 3445679999854221
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..-...++..+. .++|++.++++..
T Consensus 373 ---~G~~~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 373 ---KGCAAEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred ---CCCCHHHHHHHH-hcCCCEEEEEcCC
Confidence 110122444433 3789998888743
No 247
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.63 E-value=6.7e-06 Score=84.40 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=76.2
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc-CCcchhhhhhhhhh--
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST-YPRTYDLLHAWTVF-- 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~-~p~tfDlvh~~~~~-- 530 (617)
+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.+. |.--...|+.+.++. +...||+|.++-=+
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 6999999999999998754 22 4566664 4565554432 210011133222221 23579999865211
Q ss_pred ----hhhh----hc--CC------C----cccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccccc
Q 007128 531 ----SDIE----KR--GC------S----GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 531 ----~~~~----~~--~c------~----~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
..+. .+ +. + +..++....++|+|||.+++....+-..++..++...+|+. .+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~--~~~~ 239 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIA--RVAS 239 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCc--eeeE
Confidence 1000 00 01 1 23677778899999999999888888888999999989988 5654
No 248
>PHA03412 putative methyltransferase; Provisional
Probab=97.62 E-value=9.8e-06 Score=81.76 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=58.1
Q ss_pred eEEEeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..++.+ .|+++|+++.++..++ +....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-----~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-----RIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-----hhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999998876542 5888888776554443 333346677788776665 4689999987432
Q ss_pred cccc-cc----------cceEEEEecccccCCce
Q 007128 289 IDWL-QR----------DGILLLELDRLLRPGGY 311 (617)
Q Consensus 289 ~h~~-~~----------~~~~L~el~RvLrPGG~ 311 (617)
.... .+ ...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2110 00 01255666676676665
No 249
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.62 E-value=1.4e-05 Score=84.80 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC-CCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY-PSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+..+.. ..++||+|++.-- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 68999999999999999875 5999999999888877 45555555 47888888876542 3457999986521 0
Q ss_pred ccccceEEEEecccccCCceeeecChh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. ....+.++...++|++.++++..+
T Consensus 251 ~G-~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 RG-IGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CC-ccHHHHHHHHHcCCCeEEEEECCc
Confidence 00 011122223335788888887544
No 250
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.60 E-value=1.4e-05 Score=80.68 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=53.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH---hCCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE---RGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~---rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|.|+..+++. .|+++|+++.++.....+.++- ...++. ..+.+.++..-..||+++++.+.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCCceeeeEEEeehHh
Confidence 468999999999999999876 4899999987665422221110 011222 11222222222367877766542
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+..+.++|+| |.+++-
T Consensus 154 ---------~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEEE
Confidence 25567888888 766653
No 251
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=2.4e-05 Score=81.60 Aligned_cols=134 Identities=24% Similarity=0.302 Sum_probs=85.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhh----
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWT---- 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~---- 528 (617)
+|||||||+|.+|.+|+...-. .+|+.+|. +..+..|.+. |+ .-...+|.+. .+..||+|.++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---LRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc---cCCceeEEEeCCCCCC
Confidence 8999999999999999976331 26777774 5555554333 43 1111144433 446889886421
Q ss_pred ---------hhhh-----hhhcCC---CcccchhhccccccCcceEEEecChhHHHHHHHhhhhccc-ccccccccCCCC
Q 007128 529 ---------VFSD-----IEKRGC---SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNW-EAVATTADASSD 590 (617)
Q Consensus 529 ---------~~~~-----~~~~~c---~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~ 590 (617)
++.| +..... ....++.+..++|+|||++++.......+.+++++...++ ..+....|
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d---- 264 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKD---- 264 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEec----
Confidence 1000 000111 2237888999999999999999998888899999999994 43312222
Q ss_pred CCCCCCeEEEEEEe
Q 007128 591 SDKDGDEVVFIVQK 604 (617)
Q Consensus 591 ~~~~~~~~~l~~~K 604 (617)
-.+.++++++++
T Consensus 265 --~~g~~rv~~~~~ 276 (280)
T COG2890 265 --LFGRDRVVLAKL 276 (280)
T ss_pred --CCCceEEEEEEe
Confidence 245677777665
No 252
>PRK04457 spermidine synthase; Provisional
Probab=97.59 E-value=1.3e-05 Score=82.87 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=62.0
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-ccc------cchh-hhhhhcccCCcchhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-GLI------GSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-gl~------~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
..-++|||+|||.|.++..++...- ...|+.+|. +.+++.|.+. ++. -.++ |..+-+...+.+||+|.++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3456899999999999998876421 124566664 5666666544 111 1111 2112233445789999865
Q ss_pred hhhhhhhh-cCCCcccchhhccccccCcceEEE
Q 007128 528 TVFSDIEK-RGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 528 ~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
.|..... ....-..++.++.++|+|||.+++
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 2331110 111235889999999999999998
No 253
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.59 E-value=7.1e-06 Score=82.44 Aligned_cols=100 Identities=23% Similarity=0.198 Sum_probs=66.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh------------CCCcccccccccccCCCC-Ccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER------------GIPAYLGVLGTKRLPYPS-RSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r------------g~~~~~~~~d~~~lpf~~-~sF 279 (617)
..+||+.|||.|.-+..|+++ .|+|+|+|+..+..+..+..... .-++.+.++|+..++... ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 368999999999999999987 49999999876655432211100 012355677887776543 579
Q ss_pred ccccccccccccccc-cceEEEEecccccCCceeee
Q 007128 280 ELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 280 DlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvi 314 (617)
|+|+=..++.....+ ..++.+.+.++|+|||.+++
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 999744333322222 24599999999999999444
No 254
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.59 E-value=3e-06 Score=84.72 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=55.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc-CC--cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST-YP--RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~-~p--~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.+++.|++....-..|+.+|. +.+++.|.++ |+ ..++-.+.+... ++ ..||+|+++...
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~- 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAAG- 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCCc-
Confidence 36999999999999999875221113555553 5666555443 33 222222222111 12 689999875433
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
..+..++.+.|+|||++++-
T Consensus 157 ---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 ---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------ccccHHHHHhcCcCcEEEEE
Confidence 33556778999999999985
No 255
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.58 E-value=1.3e-05 Score=84.66 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=69.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCCcchhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYPRTYDLLHAWT-- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p~tfDlvh~~~-- 528 (617)
.+|||+|||+|.++.+|+...- ..+|+.+|. +.+++.|.++ |+ +-.++ |+.+.++ +++||+|.++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 4699999999999999986521 125677774 5666666544 33 22222 3222222 26899999751
Q ss_pred ----hhhhhh---hcCC------------CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcc
Q 007128 529 ----VFSDIE---KRGC------------SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALN 577 (617)
Q Consensus 529 ----~~~~~~---~~~c------------~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~ 577 (617)
-+.++. .+.. ....++.+..++|+|||++++-.... ..++.+++....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 111000 0000 12467899999999999999866554 445777777654
No 256
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.58 E-value=2.1e-05 Score=78.00 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=74.1
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~ 251 (617)
+..+..|.+. .+....+...+.+.+.+... . ...+|||+|||+|.++..++.+ .|+++|+++..+..++
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-----~--~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-----I--VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-----c--CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3444444332 22334444445555555320 1 1258999999999999764332 5889999887766555
Q ss_pred hHHHHHhCC-Ccccccccccc-cCCCCCcccccccccccccccccc-ceEEEEec--ccccCCceeeecCh
Q 007128 252 IQFALERGI-PAYLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD-GILLLELD--RLLRPGGYFAYSSP 317 (617)
Q Consensus 252 ~~~a~~rg~-~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~--RvLrPGG~lvis~p 317 (617)
+.+...++ ++.+...|+.. ++...++||+|++.-- +.... ..++..+. .+|+|+|++++...
T Consensus 94 -~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 94 -KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 33333343 46666667644 2223457999987632 11111 12233222 34788999888744
No 257
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.58 E-value=8.5e-06 Score=80.89 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=91.8
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh--CCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER--GIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r--g~~~~~~~ 266 (617)
+.+.+.+.+.-.. +...+.+|||...|-|.++...+++ .|+.++.+++-+..|.++--... ...+.+..
T Consensus 118 dP~~Dt~~Kv~~V------~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iil 191 (287)
T COG2521 118 DPLEDTLAKVELV------KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIIL 191 (287)
T ss_pred CcHHHHHhhhhee------ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEec
Confidence 4555666554333 3445689999999999999888876 47778888877766654321111 11345666
Q ss_pred cccccc--CCCCCccccccccccccccccc--cceEEEEecccccCCceeeecChhhh-cCCHHHHHHHHHHHHHHHHhh
Q 007128 267 LGTKRL--PYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 267 ~d~~~l--pf~~~sFDlV~~s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~~w~~l~~l~~~~g 341 (617)
+|+.++ .|+|.+||+|+-.--.+..... -..+-+|++|+|||||.++--+-+.. .+.. ......+.+.+++.|
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG--~d~~~gVa~RLr~vG 269 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG--LDLPKGVAERLRRVG 269 (287)
T ss_pred ccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc--CChhHHHHHHHHhcC
Confidence 676554 4889999999632110000000 13477899999999999986432221 1111 112356788899999
Q ss_pred hhhhhcc
Q 007128 342 WRIAAKR 348 (617)
Q Consensus 342 f~~v~~~ 348 (617)
|.++...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9866543
No 258
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.57 E-value=6.2e-06 Score=78.75 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=40.0
Q ss_pred hhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 511 CEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 511 ~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.++++.-+++||+|.+..++.++. +...+|.|+.|+|||||.|+|.|..
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV----DRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC----CHHHHHHHHHHHcCcCeEEEEEECC
Confidence 344542238999999998888775 7889999999999999999988764
No 259
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.56 E-value=5.8e-06 Score=88.16 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=71.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC---Ccchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY---PRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~---p~tfDlvh~~~~~~~ 532 (617)
.|||.|||+|++...++..+. .|..+|. +.|+..+..+ |+-. ++-.+.++... +++||+|.++--|..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 599999999999877776665 5666674 5665544332 3311 11112222222 379999998532210
Q ss_pred ---hhhc--CCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 533 ---IEKR--GCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ---~~~~--~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
...+ ......+|.|+.|+|||||++++-.+... .+++.++..+| ++
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-ch
Confidence 0000 01236799999999999999987765432 56677888888 64
No 260
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.55 E-value=5.6e-06 Score=69.98 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=58.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe---eccc---ccchhhhhhhccc-CCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY---DRGL---IGSIHNWCEAYST-YPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~---~rgl---~~~~~~~~e~~~~-~p~tfDlvh~~~~~~~ 532 (617)
+|+|+|||.|.++..+++... ..+..+|. ++.+..+. ..+. +-.++.-...+.. .+.+||+|.+..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 379999999999999987321 24444443 22222221 1111 1112211112221 2488999999888875
Q ss_pred -hhhcCCCcccchhhccccccCcceEEEe
Q 007128 533 -IEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 533 -~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.. ....++..+.+.|||||.+++.
T Consensus 79 ~~~----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh----HHHHHHHHHHHHcCCCCEEEEE
Confidence 32 5678999999999999999986
No 261
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.55 E-value=1.6e-05 Score=81.82 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCCceeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHhCCC--ccccccccccc---CCCCCcc
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRL---PYPSRSF 279 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~l---pf~~~sF 279 (617)
..+..-+||||.||.|......+.. .|.-.|+++..++..+ +.++++|+. +.|...|+.+. .--+-..
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 4455678999999999766555432 4666788888777776 566777775 36777775432 1112346
Q ss_pred cccccccccccccccc---ceEEEEecccccCCceeeecChhhhcCCHHHH---------HHH-------HHHHHHHHHh
Q 007128 280 ELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSPEAYAQDEEDL---------RIW-------KEMSALVERM 340 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~---------~~w-------~~l~~l~~~~ 340 (617)
++++.+.. +...++. ...|.-+.+++.|||+++.+.-++.+..+... ..| .+|.++.+.+
T Consensus 211 ~l~iVsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 211 TLAIVSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred CEEEEecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 88887754 5554442 23688899999999999999866655443211 235 8899999999
Q ss_pred hhhhhhc
Q 007128 341 CWRIAAK 347 (617)
Q Consensus 341 gf~~v~~ 347 (617)
||+.+..
T Consensus 290 GF~K~~q 296 (311)
T PF12147_consen 290 GFEKIDQ 296 (311)
T ss_pred CCchhhh
Confidence 9976553
No 262
>PLN02672 methionine S-methyltransferase
Probab=97.54 E-value=2.2e-05 Score=94.41 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=76.1
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhC-----------------CCcccccccccccCC
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERG-----------------IPAYLGVLGTKRLPY 274 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg-----------------~~~~~~~~d~~~lpf 274 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+... .+ -++.+..+|.....-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhcc
Confidence 58999999999999888764 599999999988888744432 21 136677777654321
Q ss_pred C-CCccccccccccccccc---------------------ccc----------------ceEEEEecccccCCceeeecC
Q 007128 275 P-SRSFELAHCSRCRIDWL---------------------QRD----------------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 275 ~-~~sFDlV~~s~~l~h~~---------------------~~~----------------~~~L~el~RvLrPGG~lvis~ 316 (617)
. ...||+|+++--.+... ++. .+++.++.++|+|||++++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999863211000 000 124455667999999999842
Q ss_pred hhhhcCCHHHHHHHHHHH-HHHHHhhhhh
Q 007128 317 PEAYAQDEEDLRIWKEMS-ALVERMCWRI 344 (617)
Q Consensus 317 p~~~~~~~~~~~~w~~l~-~l~~~~gf~~ 344 (617)
-. .+. +.+. +++++.||+.
T Consensus 279 G~----~q~-----~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 279 GG----RPG-----QAVCERLFERRGFRI 298 (1082)
T ss_pred Cc----cHH-----HHHHHHHHHHCCCCe
Confidence 11 111 4566 5888888854
No 263
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=9.6e-06 Score=80.94 Aligned_cols=101 Identities=16% Similarity=0.431 Sum_probs=64.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH--Hh--CCC-------------------------
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL--ER--GIP------------------------- 261 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~--~r--g~~------------------------- 261 (617)
+..+|||||-.|.++..+++. .|.|+||++.-+..|..+.-. .. .+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 357999999999999888864 699999999877666532110 00 000
Q ss_pred ------cccc----cccc-cccCCCCCccccccccc----ccccccccc-ceEEEEecccccCCceeeec
Q 007128 262 ------AYLG----VLGT-KRLPYPSRSFELAHCSR----CRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 262 ------~~~~----~~d~-~~lpf~~~sFDlV~~s~----~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
+.+. +.+. +-+.+....||+|.|.. +.+.|.++. ..++..+.++|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 0000 01223446799998853 223444442 35999999999999999995
No 264
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.52 E-value=9.2e-06 Score=82.45 Aligned_cols=92 Identities=21% Similarity=0.381 Sum_probs=69.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
+..++||+|||-|+.+..|+.. .-.|...+. +.|...-.+||. +=...+|.+ -+..||+|-|-.|+..-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRCD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhccC-
Confidence 4557999999999999999873 334555553 577777778887 223334542 246899999999998443
Q ss_pred cCCCcccchhhccccccCcceEEEe
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
++..+|.+|++.|+|+|.+|+.
T Consensus 166 ---~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 166 ---RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---CHHHHHHHHHHHhCCCCEEEEE
Confidence 5668999999999999999885
No 265
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.48 E-value=4.7e-05 Score=78.44 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=59.1
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. .. +.+|||||||+|.++..|+++ .|+++|+++.++..+...... ..++.+..+|+.
T Consensus 16 ~~~~~iv~~~~~------~~--~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 16 RVVDRIVEYAED------TD--GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHHHhcCC------CC--cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 445566666554 22 368999999999999999876 589999998777665533222 235677888888
Q ss_pred ccCCCCCcccccccccc
Q 007128 271 RLPYPSRSFELAHCSRC 287 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~ 287 (617)
.++++ .||.|+++..
T Consensus 86 ~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 86 KVDLP--EFNKVVSNLP 100 (258)
T ss_pred cCCch--hceEEEEcCC
Confidence 87776 4898887643
No 266
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.47 E-value=4.1e-05 Score=79.50 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
..+.+.+.+.. .. +.+|||||||+|.++..|+++ .|+++|+++.+++.++.... ..++.+..+|+..
T Consensus 30 i~~~i~~~l~~------~~--~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAAGP------QP--GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhcCC------CC--cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhc
Confidence 34455555543 22 368999999999999999876 58999999987766653221 1357778888888
Q ss_pred cCCCCCcccccccc
Q 007128 272 LPYPSRSFELAHCS 285 (617)
Q Consensus 272 lpf~~~sFDlV~~s 285 (617)
+++++-.+|.|+++
T Consensus 99 ~~~~~~~~~~vv~N 112 (272)
T PRK00274 99 VDLSELQPLKVVAN 112 (272)
T ss_pred CCHHHcCcceEEEe
Confidence 87664224677655
No 267
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.47 E-value=5.8e-06 Score=79.70 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=64.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--cc-chhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IG-SIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~-~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|+.+.-.. .|+.+|. +++++.+.+. ++ +- ..+|+.+.+. +..||+|.++-=|.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPFH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccchh
Confidence 359999999999999998863321 3666664 4555555332 22 11 2234444433 39999999864332
Q ss_pred hhhh-cCCCcccchhhccccccCcceEE--EecChhHHHHHHHhh
Q 007128 532 DIEK-RGCSGEDLLLEMDRILRPTGFVI--IRDKQSVVDFVKKYL 573 (617)
Q Consensus 532 ~~~~-~~c~~~~~l~Em~RiLrPgG~~i--i~~~~~~~~~~~~~~ 573 (617)
.... .......++.+-.++|||||.++ +.........++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f 154 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELF 154 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhc
Confidence 1110 00124678999999999999884 333333333344433
No 268
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=2.8e-05 Score=79.68 Aligned_cols=97 Identities=26% Similarity=0.223 Sum_probs=69.1
Q ss_pred eeEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
+..+||+|||.|-.+..=..-.+.+.|++...+. .++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~-----~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLG-----GAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhcc-----ccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4679999999996654332224667777664433 33333332 46678999999999999999988776666543
Q ss_pred c--ceEEEEecccccCCceeeecCh
Q 007128 295 D--GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 295 ~--~~~L~el~RvLrPGG~lvis~p 317 (617)
. ..+++|+.|+|||||...+..-
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 2 3599999999999999777543
No 269
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.46 E-value=2.8e-05 Score=79.40 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=81.2
Q ss_pred HHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccc
Q 007128 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGT 269 (617)
Q Consensus 197 ~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~ 269 (617)
.|...+.+ .+| .+|||.|.|+|+++..|+.. .|+..|+.......|+.++. ..++ ++.+...|+
T Consensus 31 ~I~~~l~i------~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 31 YILMRLDI------RPG--SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHTT--------TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-G
T ss_pred HHHHHcCC------CCC--CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecce
Confidence 45555555 334 79999999999999999864 47788887766666654433 3454 367777787
Q ss_pred cccCCC---CCccccccccccccccccccceEEEEecccc-cCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 270 KRLPYP---SRSFELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 270 ~~lpf~---~~sFDlV~~s~~l~h~~~~~~~~L~el~RvL-rPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
..-.|. ++.||.|+ +...+ +..++..+.++| ||||++++-.|... . -......+++.||..+
T Consensus 102 ~~~g~~~~~~~~~Davf-----LDlp~-Pw~~i~~~~~~L~~~gG~i~~fsP~ie----Q----v~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVF-----LDLPD-PWEAIPHAKRALKKPGGRICCFSPCIE----Q----VQKTVEALREHGFTDI 167 (247)
T ss_dssp GCG--STT-TTSEEEEE-----EESSS-GGGGHHHHHHHE-EEEEEEEEEESSHH----H----HHHHHHHHHHTTEEEE
T ss_pred ecccccccccCcccEEE-----EeCCC-HHHHHHHHHHHHhcCCceEEEECCCHH----H----HHHHHHHHHHCCCeee
Confidence 655553 35799987 33333 367899999999 99999998666552 1 1344555666788655
Q ss_pred h
Q 007128 346 A 346 (617)
Q Consensus 346 ~ 346 (617)
.
T Consensus 168 ~ 168 (247)
T PF08704_consen 168 E 168 (247)
T ss_dssp E
T ss_pred E
Confidence 3
No 270
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.46 E-value=1.6e-05 Score=81.95 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred ceeEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHh---------------------------C-----
Q 007128 214 RLRTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALER---------------------------G----- 259 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~r---------------------------g----- 259 (617)
...+||-=|||.|.++..++.++ +.|.++|--|+-... +.... .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34689999999999999998874 566666665542221 11110 0
Q ss_pred ----------CCcccccccccccCCCC---CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHH-
Q 007128 260 ----------IPAYLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE- 325 (617)
Q Consensus 260 ----------~~~~~~~~d~~~lpf~~---~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~- 325 (617)
.+.....+|+..+..++ ++||+|++.+ ++.-..+.-.+|..|.++|||||+++=.+|-.|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 01112233443333333 6899998764 24444444568999999999999998888877765553
Q ss_pred ------HHHHHHHHHHHHHHhhhhhhhcc
Q 007128 326 ------DLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 326 ------~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
..-.|+++..+++..||+.+..+
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 33447999999999999876543
No 271
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.45 E-value=6e-06 Score=83.88 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred ccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeeccccc-chhhhhhhcccCCcchhhhhhhhh
Q 007128 453 KIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIG-SIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 453 ~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~-~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
...+.+.+.|+|+|+|.|.++.+++++ ++ .++-.|.|..++.+.+..-+. .-+|. |.++|. +|++...++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHV 167 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC---cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehh
Confidence 356788889999999999999999865 34 334445555555544421111 11222 244667 999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCc--ceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPT--GFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPg--G~~ii~~~~ 563 (617)
+++.... +...+|..+.+.|+|| |.|+|-|..
T Consensus 168 Lh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDE--DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9866544 3468999999999999 999999886
No 272
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.44 E-value=9.8e-06 Score=81.02 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC--cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP--RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p--~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.+++.|++...-...|+.+|. +++++.+.++ |+ ..+.-.+.+ +..++ ..||+|++...+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 47999999999999888764210013444553 4666555443 22 111111111 11222 7899999865444
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+..++.+.|||||.+++-.
T Consensus 157 ----------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 157 ----------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ----------cchHHHHHhhCCCcEEEEEE
Confidence 33456677999999998854
No 273
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.41 E-value=2.1e-05 Score=69.86 Aligned_cols=100 Identities=29% Similarity=0.386 Sum_probs=66.9
Q ss_pred EEeeccccccc--ccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccc--cCCCC-Ccccccccccccc
Q 007128 218 VLDVGCGVASF--GAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKR--LPYPS-RSFELAHCSRCRI 289 (617)
Q Consensus 218 VLDVGCG~G~~--~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~--lpf~~-~sFDlV~~s~~l~ 289 (617)
++|+|||+|.. ...+... .++++|+++.++..+...... .... +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 466778877666552221111 2222 3555566555 78877 489999 666656
Q ss_pred ccccccceEEEEecccccCCceeeecChhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5554 45789999999999999999765543
No 274
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.41 E-value=2.1e-05 Score=92.07 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=77.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+|||+|+|+.+++..|.. .|+.+|. +.+++.|.+. |+ .+.+-+|.+ .+.++||+|.+
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~---~~~~~fDlIil 614 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK---EAREQFDLIFI 614 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH---HcCCCcCEEEE
Confidence 47999999999999999987653 3666664 4555555443 22 122222222 23578999986
Q ss_pred h-----------hhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccccc
Q 007128 527 W-----------TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 527 ~-----------~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
+ .++.... +...++....++|+|||.+++......+......+...+++. ++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~----~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~--~~i~ 679 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQR----DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKA--EEIT 679 (702)
T ss_pred CCCCCCCCCccchhhhHHH----HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeE--EEEe
Confidence 4 2232222 345678888999999999998776665556677777778877 4543
No 275
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.41 E-value=1.9e-05 Score=78.38 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=78.6
Q ss_pred chhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEe-----ecccccchhhh-hhhcccCCcchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIY-----DRGLIGSIHNW-CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~-----~rgl~~~~~~~-~e~~~~~p~tfDlvh~~~~~ 530 (617)
.....||.|||.|..+..|.-.-. .|-=|.|+ +..++.|. +.+-++.+... -+.|..-+..||+|.+.=++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 455699999999999998765433 33234443 34444444 22223433321 13443223799999988888
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhccccccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~~~~ 584 (617)
.||.+. ++...|.--..-|+|+|.++|.+..+ ..+.++++.++.+++.++..
T Consensus 133 ghLTD~--dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDE--DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HH--HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHH--HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 888755 77889999999999999999999876 46679999999999987433
No 276
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=2.1e-05 Score=81.55 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=72.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe----eccccc--chhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY----DRGLIG--SIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~----~rgl~~--~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|-++..|+++.- ...|+-+|. ...++.+. ..++-+ ++++ --++.-...||+|.|+==|+.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998642 113444442 12222221 112222 2221 1122233699999876666521
Q ss_pred hhcCC---CcccchhhccccccCcceEEEec--ChhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 534 EKRGC---SGEDLLLEMDRILRPTGFVIIRD--KQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 534 ~~~~c---~~~~~l~Em~RiLrPgG~~ii~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
. .- --..++.+-.+-|++||.++|=- ......+|+++.. ++ +++. ..+.-+||-++|.
T Consensus 238 ~--~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v--~~la------~~~gf~Vl~a~k~ 300 (300)
T COG2813 238 K--AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NV--EVLA------KNGGFKVLRAKKA 300 (300)
T ss_pred c--chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CE--EEEE------eCCCEEEEEEecC
Confidence 1 00 01267888899999999885543 3445556666655 22 3332 1456788888773
No 277
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=2.6e-05 Score=78.01 Aligned_cols=119 Identities=15% Similarity=0.254 Sum_probs=81.4
Q ss_pred hHHHhhhcchhhHhhhcCCce-EEEEeecCC-CCCceEEEeeccc------ccchhhhhhhcccCC---cchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDV-WVMSVVPED-GPNTLKLIYDRGL------IGSIHNWCEAYSTYP---RTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~-~~~~l~~~~~rgl------~~~~~~~~e~~~~~p---~tfDlvh~~~~ 529 (617)
.||.+|||.|.-.--|.+..- --..|-..| +++.+++..++-- -+.++|.+.+-...| .++|+|.+--|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999987766664311 012344555 3555444433321 455666654432232 99999999889
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh------------------------------HHHHHHHhhhhcccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------------VVDFVKKYLRALNWE 579 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------------~~~~~~~~~~~~~w~ 579 (617)
|+-++ .-.+..+|..+.|+|||||.+++||--. ..+++.++....+..
T Consensus 154 LSAi~--pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIH--PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccC--hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 98664 3367799999999999999999998754 356777787777777
Q ss_pred cc
Q 007128 580 AV 581 (617)
Q Consensus 580 ~~ 581 (617)
.+
T Consensus 232 ~~ 233 (264)
T KOG2361|consen 232 EV 233 (264)
T ss_pred hh
Confidence 64
No 278
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=4.4e-05 Score=80.69 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred eeEEEeeccccccccccc--ccchhhhhccCCCccchhhhHHHHHhCCCcccc-cccccccCCCCCcccccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYL--LSSDVITMSLAPNDVHQNQIQFALERGIPAYLG-VLGTKRLPYPSRSFELAHCSRC---- 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L--~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~-~~d~~~lpf~~~sFDlV~~s~~---- 287 (617)
+..|||==||||+++... ....++|.|++..|+..+..++..-+--+..+. ..|+..+|+++++||.|++---
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 368999999999887554 445688999988888777654443321223233 3499999999999999987421
Q ss_pred -ccccc---cccceEEEEecccccCCceeeecCh
Q 007128 288 -RIDWL---QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 -l~h~~---~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
-..-. .-...+|..+.++|++||++++..|
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 00000 1113578889999999999999877
No 279
>PRK00811 spermidine synthase; Provisional
Probab=97.32 E-value=2.4e-05 Score=81.68 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=61.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------cc---------ccchhhhhhhcccCCc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------GL---------IGSIHNWCEAYSTYPR 519 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------gl---------~~~~~~~~e~~~~~p~ 519 (617)
.+-++|||+|||.|+++..++++ ++ .+|+.++. +.+++.+.+. |+ ++....+ +..-++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCC
Confidence 45678999999999999999876 44 25666664 5666555432 11 1211111 122247
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+||+|.++..-+......---...+.++.|.|+|||.+++..
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 999998754322100000001456789999999999999864
No 280
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.31 E-value=5e-05 Score=82.46 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=65.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC-CCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY-PSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++ +.+...++ ++.+..+|+..... ..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 58999999999999988865 5899999998887776 44444555 56777778755321 1246999986522 1
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..-...++..+ ..++|++.++++..
T Consensus 311 ~G~~~~~l~~l-~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 RGIGKELCDYL-SQMAPKFILYSSCN 335 (374)
T ss_pred CCCcHHHHHHH-HhcCCCeEEEEEeC
Confidence 11011233333 24789999999853
No 281
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.30 E-value=7.2e-05 Score=74.15 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=75.6
Q ss_pred eEEEeeccccccccccccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC---CCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP---SRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~---~~sFDlV~~s~~l~h~ 291 (617)
-++|||||=+......-.. -.|+.||+.+... .+...|+...|.| ++.||+|+|+.+ +.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSLV-LNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEEE-Eee
Confidence 6899999875543332211 1477777766221 1334566666653 679999999987 456
Q ss_pred cccc---ceEEEEecccccCCce-----eeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 292 LQRD---GILLLELDRLLRPGGY-----FAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 292 ~~~~---~~~L~el~RvLrPGG~-----lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
.+++ ..+++.+.+.|+|+|. |+++.|..--..... ..-+.+..+++.+||..+..+
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy-~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY-MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc-cCHHHHHHHHHhCCcEEEEEE
Confidence 5544 3599999999999999 888876653211100 001568889999999776543
No 282
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.29 E-value=3.7e-05 Score=80.94 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=66.4
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRC-- 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~-- 287 (617)
.++|||||||+|.++..-+++ .|+++|.|... ..+ .+.+..++.. +++..+.++++.+|....|+|++-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a-~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFA-RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHH-HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 368999999999888777665 58888887633 333 3566666654 45556666666666779999997542
Q ss_pred -ccccccccceEEEEecccccCCceeeec
Q 007128 288 -RIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 288 -l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+++ ..-...+|-.=.+.|+|||.++=+
T Consensus 139 ~Ll~-EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 139 FLLY-ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHH-hhhhhhhhhhhhhccCCCceEccc
Confidence 221 112234666678899999988743
No 283
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.29 E-value=4.8e-05 Score=78.91 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=60.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-----c-c----ccchh-hhhhhcccCCcchhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-----G-L----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-----g-l----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
.+-++||++|||.|+++..+++... +.+|+.+|. +++++.+.+. + + +-.++ |-.+-+...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3455899999999999988877641 234555553 4454444332 0 0 00111 1111122235899999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.++...........-....+..+.++|+|||.+++...
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 87654321110000024677899999999999998643
No 284
>PLN02476 O-methyltransferase
Probab=97.28 E-value=4.9e-05 Score=78.86 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc-cC-C----CCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR-LP-Y----PSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~-lp-f----~~~sFDlV 282 (617)
++|||||+|+|..+..++.. .|+++|.++.....|+. ...+.|+. +.+..+|+.. |+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~-n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKR-YYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 68999999999988888753 48899999877666663 44445553 5666666533 22 1 13689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.-. .......++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8542 2223345778888999999999985
No 285
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.26 E-value=4.2e-05 Score=76.54 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=68.0
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--ccccc-ccccc-cC-CCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGV-LGTKR-LP-YPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~-~d~~~-lp-f~~~sFDlV~~s 285 (617)
++||+||.+.|..+..|+.. .++++|+++.....|+..+ ++.|+. +.... +|..+ +. ...++||+|+.-
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 68999999999888888753 4899999998887777443 344543 33333 34322 22 456899999843
Q ss_pred ccccccccccceEEEEecccccCCceeeec
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.-.+...++..+.++|||||.+++.
T Consensus 140 ----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 140 ----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 23344467899999999999999985
No 286
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.26 E-value=3e-05 Score=77.16 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=65.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cC-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LP-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lp-----f~~~sFDlV 282 (617)
++||+|||++|..+..|++. .|+++|+++.....|+ +...+.|. .+.+..+|+.. ++ ...++||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999988888753 5899999887666655 34444454 35566666533 22 123589999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.-.. ......++..+.++|+|||.+++..
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 85432 2223446777889999999999863
No 287
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.25 E-value=0.00011 Score=74.32 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK 496 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~ 496 (617)
.+|||+|||+|+|+..|+++|+ -.|..+|. ++|+.
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~ 112 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLA 112 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHH
Confidence 4699999999999999999865 24666664 34543
No 288
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.24 E-value=6e-06 Score=73.70 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=58.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-------ccchhhhhhhcccCCcchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-------IGSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-------~~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
+|||+|||+|.|+.++++.+ ..++..+|. +..++.+..+ ++ .+.+.+..+.++. +.||+|.++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 58999999999999999876 225666653 3333333222 11 2333333222222 9999999877
Q ss_pred hhhhhhh----cCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEK----RGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~----~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
-|..... ..-....++.++.|+|||||.+++--
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7652210 11123577999999999999998753
No 289
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00018 Score=69.74 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred eeEEEeecccccccccc--ccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAY--LLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~--L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+++|+|+|||||.++.. ++. ..|+++|+++..++.+. +.+.+.+..+.+.++|+.+.. ..||.|+.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEEC
Confidence 36899999999976544 333 36999999998877776 555556667888888887764 458877654
No 290
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.23 E-value=2.5e-05 Score=77.85 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=55.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC--cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++... .|..+|. +++++.+.++ |+ +-..+. ..+..++ ++||+|.++..+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccCc
Confidence 4699999999999998887643 3555553 4555544443 22 111111 0112232 789999986655
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+ +..++.+.|+|||.+++.-.
T Consensus 155 ~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh----------hhHHHHHhcCCCcEEEEEEc
Confidence 53 34567799999999988644
No 291
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.22 E-value=4.7e-05 Score=85.78 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=72.1
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc--CCCCCccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL--PYPSRSFELAHCSR 286 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l--pf~~~sFDlV~~s~ 286 (617)
....+||||||.|.++..++.. +++|+|+...-+..+. +.+.+.++ ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3468999999999999999875 6899999886666555 33444455 444555554322 26788999998765
Q ss_pred ccccccccc--------ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
. -+|.... ..++..+.++|+|||.+.+.+
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4 3453321 237889999999999999975
No 292
>PLN03075 nicotianamine synthase; Provisional
Probab=97.19 E-value=3.4e-05 Score=80.57 Aligned_cols=137 Identities=8% Similarity=0.085 Sum_probs=79.3
Q ss_pred chhhHHHhhhcchhhHhhhcC----CceEEEEeecCCCCCceEEEee-----ccc---cc-chhhhhhhcccCCcchhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKE----KDVWVMSVVPEDGPNTLKLIYD-----RGL---IG-SIHNWCEAYSTYPRTYDLL 524 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~~~~l~~~~~-----rgl---~~-~~~~~~e~~~~~p~tfDlv 524 (617)
.-++|+|||||.|++++.+.. .+..+.++.-. +.+++.|.+ .|+ +- ..+|..+. ......||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d--~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID--PSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEE
Confidence 557899999999988766543 23333344332 333332221 233 11 11122221 1112789999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHH---H-HHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVD---F-VKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~---~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
.+. ++.+.. .-+...+|..+.|.|||||+++++...-... . +..-..+ +|+.+..++ ++. ..-.-++
T Consensus 200 F~~-ALi~~d--k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~-gf~~~~~~~-P~~----~v~Nsvi 270 (296)
T PLN03075 200 FLA-ALVGMD--KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR-GFEVLSVFH-PTD----EVINSVI 270 (296)
T ss_pred EEe-cccccc--cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC-CeEEEEEEC-CCC----CceeeEE
Confidence 998 766542 2377899999999999999999997422111 1 1111111 999974444 222 3456799
Q ss_pred EEEecc
Q 007128 601 IVQKKI 606 (617)
Q Consensus 601 ~~~K~~ 606 (617)
+++|.-
T Consensus 271 ~~r~~~ 276 (296)
T PLN03075 271 IARKPG 276 (296)
T ss_pred EEEeec
Confidence 999965
No 293
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.18 E-value=0.00017 Score=75.82 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=58.2
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-CCCcccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~ 269 (617)
...+.+.+.+.. . +..+|||||||+|.++..|++. .|+++|+++.++..++..++... ..++.+..+|+
T Consensus 23 ~i~~~Iv~~~~~------~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 23 LVLDKIVEKAAI------K--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred HHHHHHHHhcCC------C--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 344555555544 2 2368999999999999999875 58999999988777764443322 23567788888
Q ss_pred cccCCCCCcccccccc
Q 007128 270 KRLPYPSRSFELAHCS 285 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s 285 (617)
...+++ .||+|+++
T Consensus 95 l~~~~~--~~d~VvaN 108 (294)
T PTZ00338 95 LKTEFP--YFDVCVAN 108 (294)
T ss_pred hhhccc--ccCEEEec
Confidence 776654 68988865
No 294
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.16 E-value=3.2e-05 Score=74.92 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=56.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhC----CCcccccccccc-c--C-CCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERG----IPAYLGVLGTKR-L--P-YPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg----~~~~~~~~d~~~-l--p-f~~~sFDlV 282 (617)
+.+|||+|||+|..+..++.. .|+..|..+ -+...+ ..+..++ ..+.+...+-.. . . ...++||+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 368999999999666655544 588888877 333332 3333322 223333333211 1 1 234689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+++.+++. ....+.++.-+.++|+|+|.++++.+..
T Consensus 124 lasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99998653 3444568888999999999988765443
No 295
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.10 E-value=7.6e-05 Score=80.31 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=74.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..++|+|||.|....+++.. ++++++.++..+..+...... .++. ..+...+....||+++.||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~- 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC- 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecc-
Confidence 47999999999888777653 688888888766665533322 2222 3346678888999999999999888754
Q ss_pred cccccceEEEEecccccCCceeeec
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.++...++.|++|+++|||+++..
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 4555578999999999999999984
No 296
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.08 E-value=0.00024 Score=72.96 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccc---ccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE---LAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFD---lV~~s 285 (617)
..+|||+|||+|.++..|+++ .++++|+++.++..++..... ..++.+..+|+..++++ +|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 368999999999999999875 588999988776655432211 23567778888887765 466 55544
No 297
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.00016 Score=73.55 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=70.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
..+.+.+.+.+... .--....+||+|||+|.++..|+.. .|+++|.|+..+..+. +.+...++...+.+.
T Consensus 131 EE~V~~Vid~~~~~-----~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-----EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhh-----hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEE
Confidence 45666666655541 1112247999999999877766543 6899999887776665 344444333222221
Q ss_pred ------c-ccccCCCCCccccccccccccccccc------------c-------------ceEEEEecccccCCceeeec
Q 007128 268 ------G-TKRLPYPSRSFELAHCSRCRIDWLQR------------D-------------GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 ------d-~~~lpf~~~sFDlV~~s~~l~h~~~~------------~-------------~~~L~el~RvLrPGG~lvis 315 (617)
| ....+..++.+|+++|+--.+...+. . ..++.-+.|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 1 12334567899999987321111000 0 01344567889999999986
Q ss_pred Ch
Q 007128 316 SP 317 (617)
Q Consensus 316 ~p 317 (617)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 54
No 298
>PLN02366 spermidine synthase
Probab=97.06 E-value=5.3e-05 Score=79.99 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec------cc--------ccchhhhhhhcccC-Ccc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR------GL--------IGSIHNWCEAYSTY-PRT 520 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r------gl--------~~~~~~~~e~~~~~-p~t 520 (617)
.+-++|||+|||.|+++..+++.+ .+..|+.++. +.+++.+.+. ++ ++....+- ... ++.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l---~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL---KNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH---hhccCCC
Confidence 456789999999999999998863 1234444442 2333333221 11 22221222 223 378
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
||+|.++...+......---...+..+.|.|+|||.+++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99998754332110000001357889999999999998743
No 299
>PRK01581 speE spermidine synthase; Validated
Probab=97.02 E-value=0.00024 Score=76.13 Aligned_cols=145 Identities=10% Similarity=0.059 Sum_probs=82.3
Q ss_pred ccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee--------cc-c--------ccchhhhhhhcccC
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD--------RG-L--------IGSIHNWCEAYSTY 517 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~--------rg-l--------~~~~~~~~e~~~~~ 517 (617)
..+-++||++|||.|+.+..+.+.+. +.+|+.+|. +.++++|.+ ++ + ++..-.+ +..-
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~ 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSP 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhc
Confidence 35567899999999999888887641 236677774 677777664 11 1 1222222 2223
Q ss_pred Ccchhhhhhhhhhhhhh-hcCCCcccchhhccccccCcceEEEecChh-----HHHHHHHhhhhcccccccccccCCCCC
Q 007128 518 PRTYDLLHAWTVFSDIE-KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~-~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
++.||+|.++...+... ....--...+..+.+.|+|||.+++..... ....+.+.++.....+. .... .-|
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~-~y~t--~vP 300 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK-SYHT--IVP 300 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE-EEEE--ecC
Confidence 47899998763211000 000011357889999999999998875532 22234555555555542 1111 111
Q ss_pred CCCCCeEEEEEEeccc
Q 007128 592 DKDGDEVVFIVQKKIW 607 (617)
Q Consensus 592 ~~~~~~~~l~~~K~~w 607 (617)
--...-.+++|.|.-.
T Consensus 301 syg~~WgF~~as~~~~ 316 (374)
T PRK01581 301 SFGTDWGFHIAANSAY 316 (374)
T ss_pred CCCCceEEEEEeCCcc
Confidence 1122367888877544
No 300
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.99 E-value=0.001 Score=66.51 Aligned_cols=116 Identities=27% Similarity=0.359 Sum_probs=77.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEe----eccc----ccchh-hhhhhcccCC-cchhhh-hh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIY----DRGL----IGSIH-NWCEAYSTYP-RTYDLL-HA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~----~rgl----~~~~~-~~~e~~~~~p-~tfDlv-h~ 526 (617)
=.+|||.=.|.|-+|..-+++|. .|.+|.- .+|-|+.|. .|+| |-.++ |..+-..+|+ .+||.| |-
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk--dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEK--DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEee--CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 34699999999999999999988 6655432 256666663 3455 23333 3345566676 889976 42
Q ss_pred hhhhh---hhhhcCCCcccchhhccccccCcceEEEe--cCh------hHHHHHHHhhhhcccccc
Q 007128 527 WTVFS---DIEKRGCSGEDLLLEMDRILRPTGFVIIR--DKQ------SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 527 ~~~~~---~~~~~~c~~~~~l~Em~RiLrPgG~~ii~--~~~------~~~~~~~~~~~~~~w~~~ 581 (617)
---|+ +|+ -+..-.||.|||||||.++=- .+- +....+.+-+.+.++.++
T Consensus 213 PPRfS~AgeLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 213 PPRFSLAGELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred CCccchhhhHh-----HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 22222 122 146789999999999998532 222 255668888888999876
No 301
>PLN02823 spermine synthase
Probab=96.93 E-value=0.00019 Score=76.71 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=64.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
.++||.||+|.|..+.++++. .|+.+|+++..++.++..+... ....+.+...|... +....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 468999999999999887764 4788888887766665333211 12345666666544 23345789999965
Q ss_pred ccccccccc------cceEEE-EecccccCCceeeec
Q 007128 286 RCRIDWLQR------DGILLL-ELDRLLRPGGYFAYS 315 (617)
Q Consensus 286 ~~l~h~~~~------~~~~L~-el~RvLrPGG~lvis 315 (617)
.. -++... ...+++ .+.+.|+|||++++-
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 21 111100 013555 788999999999874
No 302
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.91 E-value=0.00011 Score=81.52 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=59.8
Q ss_pred eeEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhC--CCcccccccccccCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERG--IPAYLGVLGTKRLPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~~d~~~lpf~~~sFDlV~~ 284 (617)
...|||||||+|.+....++ ..|++++-++......+ +.....+ -.+++..+|++.+..+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 36799999999977643322 25888888775443333 2223333 35788888999888774 8999996
Q ss_pred cccccccccc--cceEEEEecccccCCceeeec
Q 007128 285 SRCRIDWLQR--DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 285 s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis 315 (617)
=..- .+..+ ....|....|.|||||.++=+
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 3211 11111 123677889999999988743
No 303
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.88 E-value=0.00013 Score=80.74 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=65.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccch-hhhhhhcccCC-cchhhhhh----h
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSI-HNWCEAYSTYP-RTYDLLHA----W 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~-~~~~e~~~~~p-~tfDlvh~----~ 527 (617)
..|||+|||+|+++..+++..-- ..|+.+|. +.+++.+.++ |+ +..+ +|..+....++ .+||.|.+ +
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 36999999999999999875311 25667774 5666555433 22 1111 12111111123 78999983 2
Q ss_pred h--hhhhhh-----hc-------CCCcccchhhccccccCcceEEEecC----hhHHHHHHHhhhh
Q 007128 528 T--VFSDIE-----KR-------GCSGEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRA 575 (617)
Q Consensus 528 ~--~~~~~~-----~~-------~c~~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~ 575 (617)
. ++.+-. .+ ......+|.+..++|||||.++++.- .+-.+.+...+++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 2 111000 00 00123689999999999999998763 3333445555554
No 304
>PHA03411 putative methyltransferase; Provisional
Probab=96.87 E-value=6.4e-05 Score=77.55 Aligned_cols=118 Identities=10% Similarity=0.083 Sum_probs=73.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC--cchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP--RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p--~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..++.+.. ..+|+.+|. +.+++.+.++- ..+.-.+.++..++ ++||+|.++--|.++...
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 3699999999999988876420 025677774 67777665541 11111223333332 789999987777643200
Q ss_pred ------CC----------CcccchhhccccccCcceEEEecChh-------HHHHHHHhhhhccccc
Q 007128 537 ------GC----------SGEDLLLEMDRILRPTGFVIIRDKQS-------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 537 ------~c----------~~~~~l~Em~RiLrPgG~~ii~~~~~-------~~~~~~~~~~~~~w~~ 580 (617)
+. .+...+....++|+|+|.+++.-.-. .-++.+++++.-+...
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 11 13567788899999999887763322 2346777777665543
No 305
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.80 E-value=0.00011 Score=81.64 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=65.2
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC-C-cchhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY-P-RTYDLLHAW-- 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~-p-~tfDlvh~~-- 527 (617)
..|||+|||+|+++..|++. +. .|+.+|. +.+++.+.++ |+ ..+...+.+...+ + .+||+|.++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 46999999999998877753 23 4666674 5666555443 43 1122222222222 2 789999742
Q ss_pred ----hhhhhhhh--cC---C-------CcccchhhccccccCcceEEEecCh----hHHHHHHHhhhh
Q 007128 528 ----TVFSDIEK--RG---C-------SGEDLLLEMDRILRPTGFVIIRDKQ----SVVDFVKKYLRA 575 (617)
Q Consensus 528 ----~~~~~~~~--~~---c-------~~~~~l~Em~RiLrPgG~~ii~~~~----~~~~~~~~~~~~ 575 (617)
+++.+-.. .. . ....+|.++.++|||||.+++..-. +-...++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 22211000 00 0 1125899999999999999997732 223346666664
No 306
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.80 E-value=0.00012 Score=81.27 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=65.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhh---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWT--- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~--- 528 (617)
.+|||+|||+|+++..+++.-.-...|+.+|. +++++.+.++ |+ +-.++ |..+....++++||+|.++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 46999999999999998874100114666664 4555544332 33 11111 22111122347899997532
Q ss_pred ---hhhhhhh-----cCCC-------cccchhhccccccCcceEEEecCh----hHHHHHHHhhhhc-cccc
Q 007128 529 ---VFSDIEK-----RGCS-------GEDLLLEMDRILRPTGFVIIRDKQ----SVVDFVKKYLRAL-NWEA 580 (617)
Q Consensus 529 ---~~~~~~~-----~~c~-------~~~~l~Em~RiLrPgG~~ii~~~~----~~~~~~~~~~~~~-~w~~ 580 (617)
++.+-.. +..+ ...+|.+..|+|||||.++++.-. +....++.+++.- .|+.
T Consensus 332 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 332 GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 2211000 0001 135799999999999999965322 2233455666653 3554
No 307
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.80 E-value=9.9e-05 Score=81.73 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=68.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc---c----cCCcchhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY---S----TYPRTYDLLHA- 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~---~----~~p~tfDlvh~- 526 (617)
..|||+|||+|+++..|++.---...|+.+|. +.+++.+.++ |+ ..+...+.+. + ..+++||.|.+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEEEEe
Confidence 36999999999999998864110114666674 5666555433 32 1222222222 2 12378999874
Q ss_pred ---h--hhhhhhhh--cC---CC-------cccchhhccccccCcceEEEecC----hhHHHHHHHhhhhc-cccc
Q 007128 527 ---W--TVFSDIEK--RG---CS-------GEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRAL-NWEA 580 (617)
Q Consensus 527 ---~--~~~~~~~~--~~---c~-------~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~~-~w~~ 580 (617)
+ +++.+-.. ++ .+ ...+|.++.++|||||.++++.- .+..+.++..+++- .|+.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 2 23321110 00 00 24789999999999999987642 23444566666654 3543
No 308
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.79 E-value=0.00031 Score=72.64 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=65.8
Q ss_pred ceeEEEeeccccc----ccccccccc---------hhhhhccCCCccchhhhHH----HHHhCCC---------------
Q 007128 214 RLRTVLDVGCGVA----SFGAYLLSS---------DVITMSLAPNDVHQNQIQF----ALERGIP--------------- 261 (617)
Q Consensus 214 ~~~~VLDVGCG~G----~~~~~L~~~---------~V~gvDis~~dl~~a~~~~----a~~rg~~--------------- 261 (617)
..-+|+-.||++| +++..|.+. .|+|+|++...+..|+.-. ...++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3578999999999 444444332 4778888777666554211 1111221
Q ss_pred ----------cccccccccccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeec
Q 007128 262 ----------AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 262 ----------~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
+.|...|...-++..+.||+|+|-++++.+..+. .+++..++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1222333333332446799999999988765543 35999999999999999995
No 309
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.73 E-value=0.0001 Score=81.39 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=58.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh---ccc--CCcchhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA---YST--YPRTYDLLHAW-- 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~---~~~--~p~tfDlvh~~-- 527 (617)
..|||||||+|+++..+++.-- -..|+.+|. +++++.+.++ |+-..++.-+.+ .+. -+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 4799999999999999886411 124666674 5665554333 331011001111 111 12789999742
Q ss_pred ----hhhhhhhh--cCC----------CcccchhhccccccCcceEEEec
Q 007128 528 ----TVFSDIEK--RGC----------SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ----~~~~~~~~--~~c----------~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+++.+.+. .+- .-..+|.+..|+|||||.++++.
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 34432110 000 01469999999999999999873
No 310
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00061 Score=67.01 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=61.5
Q ss_pred eeEEEeeccccccccccccc----ch--hhhhccCCCccchhhhHHHHHh----------CCCcccccccccccCCCCCc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SD--VITMSLAPNDVHQNQIQFALER----------GIPAYLGVLGTKRLPYPSRS 278 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~--V~gvDis~~dl~~a~~~~a~~r----------g~~~~~~~~d~~~lpf~~~s 278 (617)
+.+.||+|.|+|.++..++. .+ +.|+|..+.-++.+....-..- .-...+.++|....--+.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 36899999999988776653 22 3677766644433331111100 11244557777776667789
Q ss_pred cccccccccccccccccceEEEEecccccCCceeeec
Q 007128 279 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 279 FDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
||.|||... .....+++...|+|||.+++-
T Consensus 163 YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVGAA-------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEccC-------ccccHHHHHHhhccCCeEEEe
Confidence 999998743 135677788899999999983
No 311
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.65 E-value=0.0004 Score=71.28 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=44.8
Q ss_pred cccccccccccccccccc---ceEEEEecccccCCceeeecCh-------------hhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 278 SFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSP-------------EAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p-------------~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
.||+|++.+|+.-...+. ..+++++.++|||||+|++..- +.....+ +.+++.++.+|
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~e------e~v~~al~~aG 231 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNE------EFVREALEEAG 231 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-H------HHHHHHHHHTT
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCH------HHHHHHHHHcC
Confidence 599999999976555543 3589999999999999998521 1111221 56788889999
Q ss_pred hhhhhc
Q 007128 342 WRIAAK 347 (617)
Q Consensus 342 f~~v~~ 347 (617)
|.+...
T Consensus 232 ~~i~~~ 237 (256)
T PF01234_consen 232 FDIEDL 237 (256)
T ss_dssp EEEEEE
T ss_pred CEEEec
Confidence 966543
No 312
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.65 E-value=0.00024 Score=72.66 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=63.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cCC------CCCcccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LPY------PSRSFEL 281 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lpf------~~~sFDl 281 (617)
++||+||+++|..+..|+.. .++++|..+.....|+. ...+.|+ .+.+..+++.. ++- ..++||+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~-~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLP-VIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 58999999999887777643 58899998866655553 3333443 35566665433 221 1368999
Q ss_pred ccccccccccccccceEEEEecccccCCceeeec
Q 007128 282 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 282 V~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|+.-. .......++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 98542 2222345667778999999999885
No 313
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.64 E-value=0.00021 Score=73.96 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=56.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCCcchhhhhhhh-----
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYPRTYDLLHAWT----- 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p~tfDlvh~~~----- 528 (617)
.|||+|||+|+++..|++.--....|+.+|. +.+++.+.++ |+ +-.++.-...++.....||.|.++-
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~ 153 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGE 153 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCC
Confidence 5999999999999888763100014666674 4555544333 33 1122211122332235699987421
Q ss_pred -hhhhhhhc--CC----------CcccchhhccccccCcceEEEec
Q 007128 529 -VFSDIEKR--GC----------SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 -~~~~~~~~--~c----------~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.+-+.. .- .-.++|.+..++|||||+++.+.
T Consensus 154 G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 154 GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12110000 00 11358999999999999998874
No 314
>PRK03612 spermidine synthase; Provisional
Probab=96.64 E-value=0.00031 Score=79.62 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=70.8
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc---------c----ccchh-hhhhhcccCCcchh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG---------L----IGSIH-NWCEAYSTYPRTYD 522 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg---------l----~~~~~-~~~e~~~~~p~tfD 522 (617)
+-++|||+|||.|..+..+++++. +..|+.+|. +++++.+.+.- + +-.++ |-.+-+...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999998887642 124555563 56666665520 0 11111 11111223458999
Q ss_pred hhhhhhhhhhhhh-cCCCcccchhhccccccCcceEEEecC-----hhHHHHHHHhhhhcccc
Q 007128 523 LLHAWTVFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDK-----QSVVDFVKKYLRALNWE 579 (617)
Q Consensus 523 lvh~~~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~-----~~~~~~~~~~~~~~~w~ 579 (617)
+|.++.-.+.... .+---++.+.++.|.|||||.+++... .....++.+.+++.++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9988633221100 000012577899999999999998543 33445566666666553
No 315
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.62 E-value=0.0002 Score=77.96 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||++||+|.++..++.. .|+++|+++..+..++ +.+..+++. ..+...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 57999999999999888643 4899999987777666 344444443 4466677655432145799998542
Q ss_pred cccccceEEEEecccccCCceeeecC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+ ..+..++..+.+.+++||++.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 222346677678899999999974
No 316
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.00037 Score=64.64 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred eeEEEeecccccccc--ccccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFG--AYLLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~--~~L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+++|+|||.|-+. ..+.+ ..|+|+|+.+..++... +.+.+..+++.+.++|+.++-+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 367999999999655 33333 36999999998877666 6777777888889999999888889999998553
No 317
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.57 E-value=0.00053 Score=67.81 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=85.9
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEE----Eeeccc----ccchhh-----hh--hhcccCCcchhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKL----IYDRGL----IGSIHN-----WC--EAYSTYPRTYDL 523 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~----~~~rgl----~~~~~~-----~~--e~~~~~p~tfDl 523 (617)
.||.||||+|.-+++++.. +- +.--|.|- ++.+.- +.+.|+ .....| |. .+-+.++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999999888864 21 12445553 222111 223333 111112 21 112224589999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------HHHHHHHhhhhc
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------------------VVDFVKKYLRAL 576 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------------------~~~~~~~~~~~~ 576 (617)
|.|..+++ +....| .+.++.+..++|+|||.|++=.+-. .++.|..++.+-
T Consensus 106 i~~~N~lH-I~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 106 IFCINMLH-ISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeehhHHH-hcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 99999888 432333 4789999999999999999877653 466799999998
Q ss_pred ccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 577 NWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 577 ~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++.. .+++ + -...++||-+|
T Consensus 184 GL~l~-~~~~----M--PANN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELE-EDID----M--PANNLLLVFRK 204 (204)
T ss_pred CCccC-cccc----c--CCCCeEEEEeC
Confidence 88874 3433 2 23567888776
No 318
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.55 E-value=0.00054 Score=67.08 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC-CCceEEEeec-cc--ccch
Q 007128 434 KDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-GL--IGSI 507 (617)
Q Consensus 434 ~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-gl--~~~~ 507 (617)
+..+.|.+++-+=...+. .+..... +|+|||+|-| |+--+++.....+.=|.++.. -+.|+.+..+ || +-++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhh-hhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 446788887765444433 2333332 5999999999 555555555553333444332 2333333333 55 4455
Q ss_pred hhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHH---hhhhccccc
Q 007128 508 HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKK---YLRALNWEA 580 (617)
Q Consensus 508 ~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~---~~~~~~w~~ 580 (617)
|.-.|. ..++..||+|.|-. ...+..++.-+.+.|+|||.+++---....+|+++ ..+.++++.
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA--------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA--------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES--------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred Eeeecc-cccCCCccEEEeeh--------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 555555 44679999998732 23456677778899999999988776665555554 444444444
No 319
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.54 E-value=0.00054 Score=74.92 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+|||+|+|+.+.+..+. -.|+.+|. +.+++.|.+. |+ .+.+-++...+..-.++||+|.+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999877655443 14555553 4555444322 22 12222221111111258999986
Q ss_pred hhhh-h----hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 527 WTVF-S----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 527 ~~~~-~----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+-=+ . .+.....+..+++.-..++|+|||.++.+..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5111 0 0110111345566667799999999998543
No 320
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.52 E-value=0.0002 Score=70.72 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=66.5
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-C----CceEEEeecccccchhhhhhh----ccc-C-Ccchhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-P----NTLKLIYDRGLIGSIHNWCEA----YST-Y-PRTYDLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~----~~l~~~~~rgl~~~~~~~~e~----~~~-~-p~tfDlvh~~ 527 (617)
.+||+|||.|.|...+|.. +. |+++++. . ..+..+..+|+ .+++-.+.+ +.. + |+++|-||.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 5999999999999999864 44 5555553 2 33333444454 222211111 111 2 3888888742
Q ss_pred hhhhhh----hhcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhc--cccc
Q 007128 528 TVFSDI----EKRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRAL--NWEA 580 (617)
Q Consensus 528 ~~~~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~--~w~~ 580 (617)
.=-+.. .+.|---...|.+|.|+|+|||.|.+. |..+..+.+.+.+... .++.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEE
Confidence 111110 123333357899999999999999665 5555667777777764 5554
No 321
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.49 E-value=0.00016 Score=76.89 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=52.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc---CCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST---YPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~---~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.+++.|++.......|+.+|. +.+++.|.++ |+ ..++..+.+... ....||+|.+.....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECCchH
Confidence 36999999999999999864210012445553 4555554432 32 112211222111 126799998754443
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++ ...+.+.|||||.+++-.
T Consensus 161 ~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 EV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred Hh----------HHHHHHhcCCCCEEEEEe
Confidence 22 234568999999988854
No 322
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0018 Score=62.41 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=80.8
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..-+||||||+|..+..|++. -..++|+++...+... +.|+.++..+...+.|...- ...++.|+++.+.-..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl-~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL-ETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH-HHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 467999999999888888765 2567899986655443 56666666655555554322 1226777776542211
Q ss_pred --------------ccc--cc----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhccC
Q 007128 290 --------------DWL--QR----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 290 --------------h~~--~~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~~ 349 (617)
.|. .+ ..+++..+..+|.|.|.+++..-..+.. +++-..++..||.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--------~ei~k~l~~~g~~------ 187 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--------KEILKILEKKGYG------ 187 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--------HHHHHHHhhcccc------
Confidence 121 11 1247778888999999999975443321 3455567777773
Q ss_pred ceEEEeccCCcc
Q 007128 350 QTVVWQKPLNND 361 (617)
Q Consensus 350 ~~~iw~k~~~~~ 361 (617)
....|++..+.+
T Consensus 188 ~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 188 VRIAMQRKAGGE 199 (209)
T ss_pred eeEEEEEecCCc
Confidence 344566555443
No 323
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.47 E-value=0.00053 Score=66.02 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=76.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceE----EEeecccc---c-chhhhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLK----LIYDRGLI---G-SIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~----~~~~rgl~---~-~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||-|.+-..|++.+..- ..+.+| .+..++ +|..+|+- - ...|.-.+ ...+.-||+||--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999876421 255555 332222 23333441 1 11122222 22358888888444333
Q ss_pred h--hh--hcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccc
Q 007128 532 D--IE--KRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 532 ~--~~--~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~ 584 (617)
- |. ...-.+...+--++++|+|||.|+|..=.=..++|.+.......+.+.++
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEee
Confidence 1 11 11112245566788999999999999888788899888888877765333
No 324
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.45 E-value=0.00065 Score=75.72 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCcccccc---
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAH--- 283 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~--- 283 (617)
++.+|||++||+|.=+.++++. .|++.|+++.-+...+ +...+.|+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3478999999999777666653 4788888876555444 333444654 455566666553 2236799998
Q ss_pred -ccccc-c--------ccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 284 -CSRCR-I--------DWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 284 -~s~~l-~--------h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
|+..- + .|... ...+|..+.+.|||||+++.++-...+...+ +.+..++++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE-----~vV~~~L~~ 260 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ-----AVCLWLKET 260 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH-----HHHHHHHHH
Confidence 55211 1 11110 0247788899999999999987554433322 334555554
No 325
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.43 E-value=0.00019 Score=79.45 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=64.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc--ccch-hhhhhhcccC-Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSI-HNWCEAYSTY-PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~-~~~~e~~~~~-p~tfDlvh~~ 527 (617)
.+|||||||+|+.+.++++. +. .|+.+|. +++++.+.++ |+ +-.. .|. ..++.+ +++||.|.++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADA-ERLTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch-hhhhhhhhccCCEEEEC
Confidence 36999999999999888764 33 5677774 5666665544 33 1111 122 123322 3789998742
Q ss_pred ------hhhhhhhh--cCC----------CcccchhhccccccCcceEEEecChh----HHHHHHHhhh
Q 007128 528 ------TVFSDIEK--RGC----------SGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLR 574 (617)
Q Consensus 528 ------~~~~~~~~--~~c----------~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~ 574 (617)
+++.+-.. .+- .-..+|.+..+.|||||.++++.-.- ..+.|+.+++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 12210000 000 11367889999999999998865432 2333555554
No 326
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.41 E-value=0.00075 Score=65.74 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=63.2
Q ss_pred eEEEeeccccccccccccc--chh-----------hhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccc
Q 007128 216 RTVLDVGCGVASFGAYLLS--SDV-----------ITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~--~~V-----------~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFD 280 (617)
..|||--||+|++..+.+. ..+ +|.|+++.+++.++. .+...++. +.+...|+..+++.++++|
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceEEEecchhhcccccCCCC
Confidence 6899999999988755433 233 489999988877764 44444543 5677889999998888999
Q ss_pred cccccccccccccc----------cceEEEEecccccCCceeeec
Q 007128 281 LAHCSRCRIDWLQR----------DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 281 lV~~s~~l~h~~~~----------~~~~L~el~RvLrPGG~lvis 315 (617)
+|+++- +|-.. ...+++++.|+|++...++++
T Consensus 109 ~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999862 22111 124788999999994444443
No 327
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.40 E-value=0.00097 Score=63.42 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.1
Q ss_pred eeEEEeecccccccccccccch-----hhhhccCCCccchhhhHHHHHhCCCcccccccccccC-----CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSD-----VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-----YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~-----V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-----f~~~sFDlV~~ 284 (617)
+.-||++|.|||-++..+++++ +++++.++ .....-.+....+.+..+|+..+. +.+..||.|+|
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 3679999999999999999875 45555554 333334445555667777776654 56778999998
Q ss_pred ccccccccccc-ceEEEEecccccCCceeeec
Q 007128 285 SRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 285 s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
.--++.+.... .++|+++...|++||-++--
T Consensus 124 ~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 124 GLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 75444443321 34888899999999988864
No 328
>PRK00536 speE spermidine synthase; Provisional
Probab=96.39 E-value=0.0014 Score=67.54 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=69.8
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHH---HH-HhCCCccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQF---AL-ERGIPAYLGV 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~---a~-~rg~~~~~~~ 266 (617)
-|.+.+.+..-. ..+.+++||=||.|.|..++.++++ .|+.+|+++..++.++.-+ +. -....+.+..
T Consensus 57 iYHEmLvHppl~------~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~ 130 (262)
T PRK00536 57 IESELLAHMGGC------TKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK 130 (262)
T ss_pred hHHHHHHHHHHh------hCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee
Confidence 465666554333 3344689999999999999999987 5888888876665444211 00 0112222221
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
... .-..++||+|++-.. ....+.+.+.|+|+|||.++.-.-..
T Consensus 131 -~~~--~~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 131 -QLL--DLDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -hhh--hccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 111 112368999996532 22457788999999999999964433
No 329
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.34 E-value=0.00088 Score=72.24 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--------C---C-----CC
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--------Y---P-----SR 277 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--------f---~-----~~ 277 (617)
+|||++||+|.++..|++. .|+++|+++.++..++ +.+...++ ++.+..+|+.++- + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988764 6999999999888777 44555555 4667777765421 1 0 11
Q ss_pred ccccccccccccccccccce-EEEEe-cccccCCceeeecChh
Q 007128 278 SFELAHCSRCRIDWLQRDGI-LLLEL-DRLLRPGGYFAYSSPE 318 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~-~L~el-~RvLrPGG~lvis~p~ 318 (617)
.||+|+. +++.. +..++ ..+++|+++++++..+
T Consensus 279 ~~d~v~l--------DPPR~G~~~~~l~~l~~~~~ivYvsC~p 313 (353)
T TIGR02143 279 NCSTIFV--------DPPRAGLDPDTCKLVQAYERILYISCNP 313 (353)
T ss_pred CCCEEEE--------CCCCCCCcHHHHHHHHcCCcEEEEEcCH
Confidence 3677753 22222 22333 3445688999997543
No 330
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.32 E-value=0.002 Score=64.12 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=80.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee---cccccchhhhhhhcccCC-cchhhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD---RGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~---rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~ 535 (617)
.++|+||+.|..+..|...+| -.+.-+|. ..|++-+.+ -+++..+..-.|.|.+|- ++||||.++..++-.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~-- 150 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT-- 150 (325)
T ss_pred ceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh--
Confidence 599999999999999999886 23444443 355544333 355444444346665565 999999988877733
Q ss_pred cCCCcccchhhccccccCcceEEEec----Chh-------------------------HHHHHHHhhhhcccccc
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRD----KQS-------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~----~~~-------------------------~~~~~~~~~~~~~w~~~ 581 (617)
-+++.-|....-+|||.|.||-+- +.. .+..+..++.+.+++.+
T Consensus 151 --NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 378889999999999999997542 211 23346678888888885
No 331
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.24 E-value=0.0015 Score=68.18 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=64.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCccccccccccc-CCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPAYLGVLGTKRL-PYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~~~~~~d~~~l-pf~~~sFDlV~~s 285 (617)
.++||-||-|.|.+++.++++ +++.+||.+..++.++.-+..-. ...+.+...|.... .-..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 369999999999999999876 47888887765554442221111 12234444454332 2223489999865
Q ss_pred ccccccccc-----cceEEEEecccccCCceeeecChh
Q 007128 286 RCRIDWLQR-----DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 286 ~~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. -+ ..+ ...+++.+.|.|+++|+++.-.-.
T Consensus 157 ~t-dp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 157 ST-DP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CC-CC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 32 22 111 134778899999999999997433
No 332
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.23 E-value=0.00048 Score=66.91 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=68.0
Q ss_pred hHHHhhhcchhhHhhhc--CCceEEEEeecCCC-CCceEEE---eec-cc--ccchhhhh-hhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALK--EKDVWVMSVVPEDG-PNTLKLI---YDR-GL--IGSIHNWC-EAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~--~~~~~v~~v~~~~~-~~~l~~~---~~r-gl--~~~~~~~~-e~~~~~p~tfDlvh~~~~~ 530 (617)
.++|+|||+|+.+..++ .... .|.+++. +..++.+ .+| |+ +-.+..+. +.++.+| +||.|.-..-
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~---~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg- 111 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSG---RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG- 111 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCc---eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-
Confidence 59999999999998888 3233 4555553 2222222 222 21 12222222 4455555 8888875222
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccc-cc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNW-EA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w-~~ 580 (617)
-+++.+|...-..|||||.+|+.-- .+....+-+.++.+++ ++
T Consensus 112 -------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei 156 (187)
T COG2242 112 -------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREI 156 (187)
T ss_pred -------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceE
Confidence 3667888888899999999988654 3455566777777888 55
No 333
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.22 E-value=0.00023 Score=72.37 Aligned_cols=96 Identities=7% Similarity=0.053 Sum_probs=53.9
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc-------ccchhhhhhhc-ccC-C
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL-------IGSIHNWCEAY-STY-P 518 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl-------~~~~~~~~e~~-~~~-p 518 (617)
..+-++|||+|||+|.-+.+|+.. +.. |+.+|. +.+++.|.+. |+ .|..-+....+ +.. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~---v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR---ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 345667999999999755555432 233 444442 3444443322 33 22222221111 111 2
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+||+|.++.-=. .....+.++.|.|||||.+++.+
T Consensus 143 ~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEEc
Confidence 6899998643222 23456778889999999998744
No 334
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.0026 Score=65.33 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=57.5
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
.++.+.+.+.. .. ..+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...++.+..+|+..
T Consensus 18 v~~kIv~~a~~------~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk 87 (259)
T COG0030 18 VIDKIVEAANI------SP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALK 87 (259)
T ss_pred HHHHHHHhcCC------CC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhc
Confidence 34566666554 22 478999999999999999987 58999998865543332222 23456778888888
Q ss_pred cCCCCC-cccccccc
Q 007128 272 LPYPSR-SFELAHCS 285 (617)
Q Consensus 272 lpf~~~-sFDlV~~s 285 (617)
.++++. .++.|+++
T Consensus 88 ~d~~~l~~~~~vVaN 102 (259)
T COG0030 88 FDFPSLAQPYKVVAN 102 (259)
T ss_pred CcchhhcCCCEEEEc
Confidence 888753 57777755
No 335
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0014 Score=71.89 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=76.4
Q ss_pred EEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
++|-+|||.-.+...+-+. .|+.+|+|+..++..+...+.++ .-..+...|...+.|++++||+|+--..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999888888764 58889999988777766655332 3456778899999999999999987655444433
Q ss_pred ccc---------eEEEEecccccCCceeeecCh
Q 007128 294 RDG---------ILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 294 ~~~---------~~L~el~RvLrPGG~lvis~p 317 (617)
+.. ..+.++.|+|+|||+++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 322 356899999999999776543
No 336
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.13 E-value=0.00073 Score=65.47 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccc---------cc-cCCC
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT---------KR-LPYP 275 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~---------~~-lpf~ 275 (617)
..+...+|||+||++|.|+..++++ .|+|+|+.+..... .+....+|. .. ++-.
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~-----------~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQ-----------NVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-T-----------TEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccccccc-----------ceeeeecccchhhHHHhhhhhcccc
Confidence 3334589999999999999998875 38899988752110 111111111 11 1112
Q ss_pred CCccccccccccccccccc----c-------ceEEEEecccccCCceeeecChh
Q 007128 276 SRSFELAHCSRCRIDWLQR----D-------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~~~----~-------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+.||+|+|-.+ .....+ . ...+.-+...|+|||.+++..+.
T Consensus 89 ~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999997642 111110 0 12344455779999998886544
No 337
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.13 E-value=0.0012 Score=65.40 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=71.8
Q ss_pred EEEeCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccccccccccc--c--hhhhhccCCCc
Q 007128 171 MVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS--S--DVITMSLAPND 246 (617)
Q Consensus 171 ~~~~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~--~--~V~gvDis~~d 246 (617)
.+..|-.+.+.-...+|..+-..-...+.+.+ .. +.+|||+-||.|.|+..++. . .|+++|+.|..
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--------~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a 137 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLV--------KP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA 137 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC----------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcC--------Cc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH
Confidence 44445555555555666554333333343332 22 37999999999999999887 2 49999999976
Q ss_pred cchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceee
Q 007128 247 VHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 247 l~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lv 313 (617)
++-.. +.++.+++. +....+|...+.. .+.||-|++.. +.....+|..+.+++++||.+-
T Consensus 138 ~~~L~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 138 VEYLK-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHH-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHH-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 65554 455555554 3455677776654 68999888653 2222347777889999998764
No 338
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.00086 Score=62.91 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=43.2
Q ss_pred ccccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeecChhhh
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
....+|.+++.|+|.|.+++.|..-+. ..++++.+|+|||||+|-++.|...
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 456789999999999999988876543 3489999999999999999877653
No 339
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.04 E-value=0.0019 Score=69.85 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=61.7
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc-C-CC--------------C
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL-P-YP--------------S 276 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l-p-f~--------------~ 276 (617)
.+|||++||+|.++..|+.. .|+++|+++.++..++ +.+...++ ++.+..+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 36999999999999988764 6999999998888777 44555555 467777776542 1 10 1
Q ss_pred Cccccccccccccccccccc-eEEEEe-cccccCCceeeecChh
Q 007128 277 RSFELAHCSRCRIDWLQRDG-ILLLEL-DRLLRPGGYFAYSSPE 318 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~~~~-~~L~el-~RvLrPGG~lvis~p~ 318 (617)
..||+|+.. +|. .+-.++ ..+.+|+++++++..+
T Consensus 287 ~~~D~v~lD--------PPR~G~~~~~l~~l~~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVD--------PPRAGLDDETLKLVQAYERILYISCNP 322 (362)
T ss_pred CCCCEEEEC--------CCCCCCcHHHHHHHHccCCEEEEEeCH
Confidence 258988732 211 122333 3334578888887544
No 340
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.97 E-value=0.0024 Score=71.00 Aligned_cols=108 Identities=15% Similarity=0.291 Sum_probs=66.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh----hhhhhccc--C-Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH----NWCEAYST--Y-PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~----~~~e~~~~--~-p~tfDlvh~~ 527 (617)
..|||+|||+|.|+..|++... .|+.+|. +.|++.|.+. |+ ..+. |+.+.+.. + +++||+|.++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3699999999999999998764 5666674 5676666543 22 1111 22222222 2 2679998752
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.++..+..++..+.+ |+|++.++++-.+..+.+ +..+. .-+|+.
T Consensus 375 -------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l 419 (443)
T PRK13168 375 -------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRL 419 (443)
T ss_pred -------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEE
Confidence 123233455555555 699999999977765543 55443 345765
No 341
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.95 E-value=0.00015 Score=72.37 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEeec----cc--ccchh-hhhhhcccCC--cch
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIYDR----GL--IGSIH-NWCEAYSTYP--RTY 521 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p--~tf 521 (617)
++.+. +|||+|||+|-++|.|+.. ...|.+|... +...+.|.++ |+ +..++ |-. ..+| ..|
T Consensus 70 l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~nv~~~~gdg~---~g~~~~apf 142 (209)
T PF01135_consen 70 LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDNVEVVVGDGS---EGWPEEAPF 142 (209)
T ss_dssp C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHSEEEEES-GG---GTTGGG-SE
T ss_pred cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCceeEEEcchh---hccccCCCc
Confidence 44443 6999999999999998864 2233333322 3333344333 22 12222 211 2233 679
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|.||++.... . +-.++-+-|||||.+|+=-.
T Consensus 143 D~I~v~~a~~-------~---ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVP-------E---IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBS-------S-----HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccc-------h---HHHHHHHhcCCCcEEEEEEc
Confidence 9999855444 2 23344466999999987544
No 342
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.94 E-value=0.00068 Score=69.46 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPA 262 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~ 262 (617)
...|.+.+....-. ...+.++||=||-|.|..+..+++. .|+.+|+++..++.++.-+.... ..++
T Consensus 59 e~~y~e~l~h~~~~------~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~ 132 (246)
T PF01564_consen 59 EFIYHEMLVHPPLL------LHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV 132 (246)
T ss_dssp HHHHHHHHHHHHHH------HSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE
T ss_pred hHHHHHHHhhhHhh------cCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce
Confidence 35676666544332 1224579999999999999998875 48888888876666553222221 2345
Q ss_pred cccccccccc-CCCCC-ccccccccccccccccc----cceEEEEecccccCCceeeecC
Q 007128 263 YLGVLGTKRL-PYPSR-SFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 263 ~~~~~d~~~l-pf~~~-sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+...|.... .-..+ +||+|+.-.. -..... ...+++.+.+.|+|||.+++-.
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6666665432 22233 8999986432 111111 1357888999999999999865
No 343
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.0045 Score=62.29 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=82.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCc---------eEEEeecccccchhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNT---------LKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~---------l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
+.+||+|+-||||+-.|.++|+. -|.++| +-++ .-+.+||-=+-.+.. +.|. .-.|++.|+-.
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~~~---~~~d~~v~DvS 153 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--EDFT---EKPDLIVIDVS 153 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HHcc---cCCCeEEEEee
Confidence 45999999999999999998763 244444 2222 223344421111111 2222 35678888887
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccccccccC
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|- .+..+|-.+..+|.|+|.++..-.+. +++++.+.+...+|... .+.-.
T Consensus 154 FI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~-gl~~S 225 (245)
T COG1189 154 FI-------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK-GLIKS 225 (245)
T ss_pred hh-------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe-eeEcc
Confidence 77 34568888888888888876655544 67789999999999985 33322
Q ss_pred CCCCCCCCCeEEEEEEec
Q 007128 588 SSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~ 605 (617)
....+...-|+++..+|.
T Consensus 226 pi~G~~GNiE~l~~~~k~ 243 (245)
T COG1189 226 PIKGGKGNIEFLLLLKKS 243 (245)
T ss_pred CccCCCCcEeeeeeeecc
Confidence 222222344777766663
No 344
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.84 E-value=0.0017 Score=68.98 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=66.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc----CCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST----YPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~----~p~tfDlvh~~~~~ 530 (617)
..|||+|||+|.|+..|++++. .|+.+|. +.+++.|.+. |+ ..++..+.+... .+..||+|..+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 4699999999999999999765 5677774 5666555433 33 222222222211 12579998864
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.+|..+...+.++-.-++|++.++++-.+..+-+ ++.+ . +|+.
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~ 291 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRI 291 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEE
Confidence 1333444444455555789999999988875543 4444 3 5654
No 345
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.83 E-value=0.003 Score=62.14 Aligned_cols=97 Identities=13% Similarity=-0.036 Sum_probs=57.1
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cC-C-CCC-ccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LP-Y-PSR-SFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lp-f-~~~-sFDlV~~s~ 286 (617)
.+|||++||+|.++..++.+ .|+++|.++..+..++ +.+...+. ++.+...|+.. +. + ... .||+|+..-
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 58999999999999999876 4889999887666555 33333343 24566666633 22 1 122 367776432
Q ss_pred cccccccc-cceEEEEe--cccccCCceeeecC
Q 007128 287 CRIDWLQR-DGILLLEL--DRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~-~~~~L~el--~RvLrPGG~lvis~ 316 (617)
- +... ...++..+ ..+|+++|.+++..
T Consensus 130 P---y~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 P---FFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred C---CCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 1110 01122211 34678888887753
No 346
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.80 E-value=0.00077 Score=74.79 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=64.8
Q ss_pred ChhhhhhhHHHHHHHHHHHHHhhccccCccc----hhhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCc---eE
Q 007128 428 SSEMFEKDTESWRNRVDSYWNLLSPKIQSNS----LRNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNT---LK 496 (617)
Q Consensus 428 ~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~----~r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~---l~ 496 (617)
|-|.|+.|...+..-=+.-.+.|...+.... -..|||+|||+|.+...-++.+ .-...|.+++. ++. ++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 6799999988775422211112222222222 3459999999999864333221 00113444443 222 21
Q ss_pred -EEeeccc---ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 497 -LIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 497 -~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.+...|+ |-+++.-.+.+. .|...|+|.+-.+=+.+ .+. .+...|.-.+|.|||||.+|
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 1123343 555554444443 35799999854333311 122 44567888999999999875
No 347
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.78 E-value=0.0014 Score=70.74 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----ccc-----ccchhhhhhhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGL-----IGSIHNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl-----~~~~~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
.++|+|||+|+...+.+.... -++..++. +..+..+.+ .++ + .+++ +..-++=+++||.+-+..+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~-~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVAD-FGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhh-hhcCCCCccccCcEEEEeec
Confidence 788999999999998876432 13444442 211111111 111 2 2222 21112112999999998888
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.|.. +.+.++.|+.|+|+|||+++.-+-.
T Consensus 189 ~~~~----~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAP----DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCC----cHHHHHHHHhcccCCCceEEeHHHH
Confidence 8776 7899999999999999999886654
No 348
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.74 E-value=0.0014 Score=69.29 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=67.7
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
....+|+|.|.|..+..+... .|.++++....+-.++...+ .| +....+|..+- .| +-|+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~-~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQD-TP--KGDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceeccccccc-CC--CcCeEEEEeecccCC
Confidence 468999999999999888874 46677766544444332332 23 44444453332 33 236999999999997
Q ss_pred ccc-ceEEEEecccccCCceeeecCh
Q 007128 293 QRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 293 ~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
+.. ..+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 753 5699999999999999999754
No 349
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.73 E-value=0.0005 Score=73.38 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=60.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc---------------cccc-hh-hhh-hhc-ccC
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG---------------LIGS-IH-NWC-EAY-STY 517 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg---------------l~~~-~~-~~~-e~~-~~~ 517 (617)
.-..|||||||=||=..-....++ -.++.+|. ...++.|.+|- .... ++ |.. +.+ ..+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 445699999999984433333333 24455553 45555566665 1111 11 100 111 122
Q ss_pred C---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 518 P---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 518 p---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+ ..||+|=|-..|++.-...-....+|..+...|||||+||.+-+-+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2 5999998777777654444455679999999999999999887754
No 350
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.71 E-value=0.0013 Score=69.47 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=58.2
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCC-cchhhhhh----hhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYP-RTYDLLHA----WTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p-~tfDlvh~----~~~ 529 (617)
+.|||+|||+|.++..-++.|. .|+.|...+. .-..+++.+.|+ |-++..--|++ ..| .-.|+|.+ +-+
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhHHH
Confidence 3599999999999888787765 3444443332 222344555555 44555555555 356 89999874 112
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEE
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
|. .. -+..+|.-=||.|+|||.++
T Consensus 141 l~---Es--MldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LY---ES--MLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH---hh--hhhhhhhhhhhccCCCceEc
Confidence 21 11 23467777899999999874
No 351
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.60 E-value=0.0036 Score=65.15 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=55.4
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCCCcc---ccc-ccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIPAY---LGV-LGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~~~---~~~-~d~~~lpf~~~sFDlV~~s 285 (617)
+.+|||+|||+|..+....+ ..++++|.|+.++..++. .... ..... ... .-....++. ..|+|+++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRA-GPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhc-ccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 46899999999965443332 257788888877765542 2221 11111 110 001123333 34999999
Q ss_pred cccccccccc-ceEEEEecccccCCceeeecChhh
Q 007128 286 RCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+++.+..+.. ..+++.+.+.+.+ +|+|..|..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 9987765421 1244555555544 888876544
No 352
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.57 E-value=0.0012 Score=66.79 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=71.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-----------------eecccccchhhhhhhcccCC---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-----------------YDRGLIGSIHNWCEAYSTYP--- 518 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-----------------~~rgl~~~~~~~~e~~~~~p--- 518 (617)
..||+.|||.|-=+.+|+++|.. |+.+|. +..++.+ ..+|. .+.-+|.+|-+++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~--~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGD--DIEIYVADIFNLPKIA 119 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccC--ceEEEEccCcCCCccc
Confidence 37999999999999999999984 444442 2111111 11222 2333445544443
Q ss_pred ---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh--h---------HHHHHHHhhhh-cccccc
Q 007128 519 ---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ--S---------VVDFVKKYLRA-LNWEAV 581 (617)
Q Consensus 519 ---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~--~---------~~~~~~~~~~~-~~w~~~ 581 (617)
+.||+|.-...|.++..+ .-.....-|.++|||||.+++---. . ..++|+.+... ...+.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred cccCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEe
Confidence 479998876777766422 3457888899999999987543211 1 34567776643 344444
No 353
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.54 E-value=0.0015 Score=63.97 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=57.2
Q ss_pred EEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+++|||+|.|.=+.-|+ +..++-+|-...-+.--. ..+.+-+++ +.+....++. +....+||+|++- ++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR-Av~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR-AVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE-SSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEee-hhc--
Confidence 79999999996444443 335676766554332221 233444655 6677666766 5556799999854 322
Q ss_pred ccccceEEEEecccccCCceeeec
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+...++.-+.+.|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 2235677788899999988874
No 354
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.50 E-value=0.0026 Score=69.15 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=72.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC---ccccccccccc-C---CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRL-P---YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~l-p---f~~~sFDlV~~ 284 (617)
+++|||+=|=||.++.+.+.. .|++||+|...+.-++.++ .-+++. ..+.++|+... . -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~-~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHH-HhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 479999999999988887764 6999999998888887444 444543 56777775432 2 22348999986
Q ss_pred cccc--------cccccccceEEEEecccccCCceeeecChhhh
Q 007128 285 SRCR--------IDWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 285 s~~l--------~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
.--. .....+...++..+.++|+|||.+++++....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 4210 11112223477888999999999999865443
No 355
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.44 E-value=0.01 Score=60.80 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=50.6
Q ss_pred ceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC----cccccccccccCCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP----AYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~----~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+...||+||.|||.++..|++. .|+++++++.|+.+-..+.. |.+ ..+..+|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~---gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQ---GTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhc---CCCccceeeEEecccccCCCc--ccceeecc
Confidence 3478999999999999999986 59999999988765553322 333 45666777777766 69999865
No 356
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.0084 Score=56.44 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=37.8
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+|.|+|-|.+|+.|+.-. ....+++|-.|+|||||++-|.-+-
T Consensus 45 dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3999999999999998632 4468999999999999999888764
No 357
>PHA03412 putative methyltransferase; Provisional
Probab=95.40 E-value=0.00089 Score=67.78 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=53.6
Q ss_pred hHHHhhhcchhhHhhhcCCce--EEEEeecCCC-CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhh-
Q 007128 461 NLMDMKAHLGSFAAALKEKDV--WVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIE- 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~--~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~- 534 (617)
+|||+|||+|.|+.+++++-. ...+|+.+|. +.+++.|.+.- ...+-...++..+ +.+||+|.++==|..+.
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 699999999999998875310 0126777774 56666655332 1122222344333 36899997643332111
Q ss_pred ---hcC---CCc-ccchhhccccccCcce
Q 007128 535 ---KRG---CSG-EDLLLEMDRILRPTGF 556 (617)
Q Consensus 535 ---~~~---c~~-~~~l~Em~RiLrPgG~ 556 (617)
..+ ..+ ..++....|+|+||++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 011 122 2366667788888887
No 358
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.37 E-value=0.0092 Score=61.08 Aligned_cols=121 Identities=23% Similarity=0.302 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec-------ccc
Q 007128 435 DTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR-------GLI 504 (617)
Q Consensus 435 D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r-------gl~ 504 (617)
+++.|-++|.+-.+... +.+--.+||+|||+|-++-.|+.- .+ .|+++|- +..+..|.+. |-|
T Consensus 129 ETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred cHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 47788888765332221 111116999999999999888753 22 3455552 3333333222 446
Q ss_pred cchhhhh--hhcccCC---cchhhhhhhh--hhh----hhh------hcC--------C--CcccchhhccccccCcceE
Q 007128 505 GSIHNWC--EAYSTYP---RTYDLLHAWT--VFS----DIE------KRG--------C--SGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 505 ~~~~~~~--e~~~~~p---~tfDlvh~~~--~~~----~~~------~~~--------c--~~~~~l~Em~RiLrPgG~~ 557 (617)
.+.|... +.+.++| ..+|++.++- +++ .+. .+. | .+..+..=.-|.|+|||++
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 7666422 2244454 8899887542 111 010 000 0 0113334456999999999
Q ss_pred EEecC
Q 007128 558 IIRDK 562 (617)
Q Consensus 558 ii~~~ 562 (617)
++.-.
T Consensus 282 ~le~~ 286 (328)
T KOG2904|consen 282 QLELV 286 (328)
T ss_pred EEEec
Confidence 88655
No 359
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.008 Score=66.46 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=68.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC---CCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP---SRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~---~~sFDlV~~s~~l 288 (617)
..++||+=||.|.|+..|+++ .|+|+++++.+++.|+ +.|+..++ ++.|..+++++.... ...||.|+..
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD--- 369 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD--- 369 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence 368999999999999999975 6999999999998888 55665655 488888887776533 2478998732
Q ss_pred cccccccceEE----EEecccccCCceeeecChhh
Q 007128 289 IDWLQRDGILL----LELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 289 ~h~~~~~~~~L----~el~RvLrPGG~lvis~p~~ 319 (617)
++..-+ -+...-++|-.++++|..+.
T Consensus 370 -----PPR~G~~~~~lk~l~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 370 -----PPRAGADREVLKQLAKLKPKRIVYVSCNPA 399 (432)
T ss_pred -----CCCCCCCHHHHHHHHhcCCCcEEEEeCCHH
Confidence 222211 12233356778899986543
No 360
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.35 E-value=0.0056 Score=63.04 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=59.1
Q ss_pred HHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCc
Q 007128 462 LMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~ 540 (617)
++|+|||.|- ++...+. ..+.+.|. ...+..+...|-....-.-+...+.=+.+||..-...|.+|+. .++.-
T Consensus 49 ~~d~gCGngk---y~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhls-T~~RR 122 (293)
T KOG1331|consen 49 GLDVGCGNGK---YLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLS-TRERR 122 (293)
T ss_pred eeecccCCcc---cCcCCCc--ceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhh-hHHHH
Confidence 9999999883 2332221 12444453 4555555555542111111222332229999999999999987 77778
Q ss_pred ccchhhccccccCcceEEE
Q 007128 541 EDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii 559 (617)
+.+|.||-|+|||||...|
T Consensus 123 ~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 123 ERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHhcCCCceEE
Confidence 8999999999999999443
No 361
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.29 E-value=0.0014 Score=62.98 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=55.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
-.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++-- +-.++.-.+.++ ++ ..||.|.++--|.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN- 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc-
Confidence 34799999999999999999854 4566663 455555443311 112221112222 23 4689987765443
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+. ...+..++.+. .+.++|.+++.....
T Consensus 89 ~~--~~~i~~~l~~~--~~~~~~~l~~q~e~a 116 (169)
T smart00650 89 IS--TPILFKLLEEP--PAFRDAVLMVQKEVA 116 (169)
T ss_pred cH--HHHHHHHHhcC--CCcceEEEEEEHHHh
Confidence 21 11233343332 256899998887643
No 362
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.00099 Score=66.03 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=54.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----ccccchhhhhhh-cccCC--cchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEA-YSTYP--RTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~-~~~~p--~tfDlvh~~~~~~~ 532 (617)
..||+||||+|--+|.|++....|.+|.-+ +...+.|..+ |+ .+++-.+-+ .--|| ..||.|+.+....
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~- 149 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPYDRIIVTAAAP- 149 (209)
T ss_pred CeEEEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCcCEEEEeeccC-
Confidence 579999999999999999865544333322 2222222221 22 112211111 22344 7899999877776
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+...|+ +-|||||.+++=.-
T Consensus 150 ------~vP~~Ll---~QL~~gGrlv~PvG 170 (209)
T COG2518 150 ------EVPEALL---DQLKPGGRLVIPVG 170 (209)
T ss_pred ------CCCHHHH---HhcccCCEEEEEEc
Confidence 3344555 67999999988554
No 363
>PLN02476 O-methyltransferase
Probab=95.15 E-value=0.0048 Score=64.22 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEE----eeccc-------ccchhhhhhhc--ccC
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLI----YDRGL-------IGSIHNWCEAY--STY 517 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~----~~rgl-------~~~~~~~~e~~--~~~ 517 (617)
...+-++||++|+++|..+.+|+.. +.. |+.++. +...++| .+-|+ .|...+....+ ..-
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccc
Confidence 3445678999999999999988852 332 333332 2333322 22243 23322222111 111
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.+||+|..+.-=. +....+...-+.|||||.+++.+.
T Consensus 192 ~~~FD~VFIDa~K~-------~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 192 GSSYDFAFVDADKR-------MYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCcEEEEecC
Confidence 36899998533211 334566777799999999987654
No 364
>PRK04148 hypothetical protein; Provisional
Probab=95.14 E-value=0.014 Score=54.19 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred eeEEEeecccccc-cccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC-CCcccccccccc
Q 007128 215 LRTVLDVGCGVAS-FGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP-SRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~-~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~-~~sFDlV~~s~~ 287 (617)
..+|||||||+|. ++..|.+. .|+++|+++. .++.+++.++ .+.+.|...-.+. -+.+|+|.+.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~-----aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK-----AVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 3689999999995 88888775 5888888775 3455555554 3455565544432 246888876543
No 365
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.14 E-value=0.01 Score=59.37 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC----CCceEEEe-eccc--
Q 007128 433 EKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG----PNTLKLIY-DRGL-- 503 (617)
Q Consensus 433 ~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~----~~~l~~~~-~rgl-- 503 (617)
.+..+.|.+++-+=...+. ..... -.+++|+|+|.| |.--++...+. +|+-+|+ -+.|+.+. +=||
T Consensus 44 ~~~~e~~~rHilDSl~~~~-~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 44 RDPEELWQRHILDSLVLLP-YLDGK-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCHHHHHHHHHHHHhhhhh-ccccc-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCC
Confidence 3446788887765333322 11111 367999999999 44444555555 3555553 13343332 2355
Q ss_pred ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE---EecChhHHHHHHHhhhhccccc
Q 007128 504 IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI---IRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 504 ~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i---i~~~~~~~~~~~~~~~~~~w~~ 580 (617)
+..+|.-.|.|..=++-||+|.|-.+ . ++..++.=.-..||+||.++ +..-.+.+.+.+.......+..
T Consensus 119 v~i~~~RaE~~~~~~~~~D~vtsRAv-a-------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 119 VEIVHGRAEEFGQEKKQYDVVTSRAV-A-------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred eEEehhhHhhcccccccCcEEEeehc-c-------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence 55666666665531111999986222 2 33334444457899988874 4444456777888888888887
Q ss_pred ccccccCCCCCCCCCCeEEEEEEe
Q 007128 581 VATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+ .+.....+....+..+++.+|
T Consensus 191 ~--~~~~~~~p~~~~~r~l~ii~~ 212 (215)
T COG0357 191 E--KVFSLTVPELDGERHLVIIRK 212 (215)
T ss_pred E--EEEEeecCCCCCceEEEEEec
Confidence 4 333334444444455555555
No 366
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.13 E-value=0.009 Score=66.15 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccC---Ccchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTY---PRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~---p~tfDlvh~~~ 528 (617)
..|||+|||+|.|+..|++... .|+.+|. +.+++.|.+. |+ +-.++ +..+.++.+ +++||+|..+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC-
Confidence 3699999999999999998654 4555553 4555544432 22 11111 222222222 2578988741
Q ss_pred hhhhhhhcCCC-cccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 529 VFSDIEKRGCS-GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~~~~c~-~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.++-. ...++.++.+ |+|++.++++-.+..+.+--..+..-+|+.
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 12222 2455556555 899999999988777665555555566765
No 367
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.12 E-value=0.0052 Score=64.22 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=58.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
++.|||||||+|.+....+.. .|.+++.|. |...|+ +....+.+. +.+..+-++++.+| +..|+|++--.-.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 468999999999776655543 588887765 433333 222323332 34445557777777 5799998643211
Q ss_pred ccccccceEEE---EecccccCCceeeec
Q 007128 290 DWLQRDGILLL---ELDRLLRPGGYFAYS 315 (617)
Q Consensus 290 h~~~~~~~~L~---el~RvLrPGG~lvis 315 (617)
-.. + +++|. ...|.|+|.|..+=+
T Consensus 255 mL~-N-ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLV-N-ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhh-h-HHHHHHHHHHHhhcCCCCcccCc
Confidence 111 1 22222 245899999998854
No 368
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.08 E-value=0.0022 Score=67.69 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=68.0
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccccccccccc-----------chhhhhccCCCccchhhhHHHHHhCC
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS-----------SDVITMSLAPNDVHQNQIQFALERGI 260 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~-----------~~V~gvDis~~dl~~a~~~~a~~rg~ 260 (617)
....+.+.+++.. .. ..+|||-.||+|.|...+.+ ..++|+|+++.....++..... +++
T Consensus 32 ~~i~~l~~~~~~~------~~--~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP------KK--GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGI 102 (311)
T ss_dssp HHHHHHHHHHHTT-------T--TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHhhhhc------cc--cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcc
Confidence 3455666777754 33 36899999999998776654 2578888887666655544333 232
Q ss_pred Cc---ccccccccccCCC--CCccccccccccc--ccccc-----cc-------------ceEEEEecccccCCceeeec
Q 007128 261 PA---YLGVLGTKRLPYP--SRSFELAHCSRCR--IDWLQ-----RD-------------GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 261 ~~---~~~~~d~~~lpf~--~~sFDlV~~s~~l--~h~~~-----~~-------------~~~L~el~RvLrPGG~lvis 315 (617)
.. .+...|....+.. ...||+|+++--+ ..|.. +. ..++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 22 2444454333322 4689999986311 10100 00 12567788999999999888
Q ss_pred Chhh
Q 007128 316 SPEA 319 (617)
Q Consensus 316 ~p~~ 319 (617)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 7764
No 369
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.01 E-value=0.0033 Score=55.52 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHhhhcchh--hHhhhcCCceEEEEeecCCC-CCceEEEeecc-------cccchhhhhhhcccCC--cchhhhhhhhh
Q 007128 462 LMDMKAHLGS--FAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG-------LIGSIHNWCEAYSTYP--RTYDLLHAWTV 529 (617)
Q Consensus 462 vLD~g~G~G~--fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg-------l~~~~~~~~e~~~~~p--~tfDlvh~~~~ 529 (617)
|+|+|||+|. +.+.+...+..+.. +|. +.++..+..+. +.....+.......+. .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554433333 332 23333222111 1111112211111233 389999 6555
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
..+.. +...++.++.|+|+|+|.+++.....
T Consensus 128 ~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLL----PPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcC----CHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44332 26789999999999999999988764
No 370
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.00 E-value=0.0061 Score=59.54 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=63.7
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+++|||+|.|+|..+..-+.. .|+..|+.+. ...+..-.+..+++.+.+...|..- .+..||+|+.+..++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3479999999999655444332 5888888863 3344434566677777666554333 5678999999887554
Q ss_pred cccccceEEEEecccccCCceeeecChhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.... .+++. ..+.|+..|..++..-+.
T Consensus 155 ~~~a-~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 HTEA-DRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred chHH-HHHHH-HHHHHHhCCCEEEEeCCC
Confidence 4332 34555 666666666655544333
No 371
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.0035 Score=63.70 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=64.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccch----hhhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSI----HNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~----~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.|||.|.|+|.++++|+..-.-...|...+. ++..+.|.+. |+.-.+ -|.++... +..||.|..
T Consensus 97 rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~~~vDav~L----- 169 (256)
T COG2519 97 RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--EEDVDAVFL----- 169 (256)
T ss_pred EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--ccccCEEEE-----
Confidence 5999999999999999953111112333332 3333333322 331101 13333322 268888765
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~ 581 (617)
++. ++-.+|..++.+|+|||.+++-.+- +-++++-..++..+|--+
T Consensus 170 Dmp----~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 170 DLP----DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred cCC----ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 233 6678888899999999999877663 344444444444466543
No 372
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.93 E-value=0.018 Score=60.26 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=39.2
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--HHHHHHHh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--VVDFVKKY 572 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--~~~~~~~~ 572 (617)
..||+|-|.-+|++-........-+|..+.+.|||||+||-+-|.+ ++.+|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 4499998877777543333344568999999999999999888765 45555544
No 373
>PLN02672 methionine S-methyltransferase
Probab=94.88 E-value=0.004 Score=75.40 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=73.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-------------------cc---ccchh-hhhhhccc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-------------------GL---IGSIH-NWCEAYST 516 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-------------------gl---~~~~~-~~~e~~~~ 516 (617)
.|||+|||+|.++.+|+++.-. -.|+.+|. +.+++.|.+. ++ +-.++ ||.+.+..
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5999999999999999875210 14555663 4555444211 11 11122 45444321
Q ss_pred CCcchhhhhhhh---------hhh-hhh-----------hcCCCc-------------ccchhhccccccCcceEEEecC
Q 007128 517 YPRTYDLLHAWT---------VFS-DIE-----------KRGCSG-------------EDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 517 ~p~tfDlvh~~~---------~~~-~~~-----------~~~c~~-------------~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
....||+|.++= .++ .+. .+.|.+ ..++.+..++|||||++++---
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 112599987431 111 110 123333 3578888999999999999988
Q ss_pred hhHHHHHH-Hhhhhcccccc
Q 007128 563 QSVVDFVK-KYLRALNWEAV 581 (617)
Q Consensus 563 ~~~~~~~~-~~~~~~~w~~~ 581 (617)
...-+.++ +++.+.+|+.+
T Consensus 280 ~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 280 GRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccHHHHHHHHHHHHCCCCee
Confidence 88888888 69988887764
No 374
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.68 E-value=0.037 Score=56.77 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLG 268 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d 268 (617)
..|..+|.. .+| .+||+-|.|+|+++.+++.. .+...|+...-...|. +.-++.++ ++.+..-|
T Consensus 95 a~I~~~L~i------~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~-eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 95 AMILSMLEI------RPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKAL-EEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHhcC------CCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHH-HHHHHhCCCcceEEEEee
Confidence 567777776 444 79999999999999888764 4666777443222222 22233444 46666777
Q ss_pred ccccCCC--CCccccccccccccccccccceEEEEecccccCCc-eeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 269 TKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 269 ~~~lpf~--~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG-~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+....|. +..+|.|+ +..+.+ ..++--++.+||.+| +|+--.|... .-+.--+++.+.||..+
T Consensus 166 Vc~~GF~~ks~~aDaVF-----LDlPaP-w~AiPha~~~lk~~g~r~csFSPCIE--------Qvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVF-----LDLPAP-WEAIPHAAKILKDEGGRLCSFSPCIE--------QVQRTCEALRSLGFIEI 231 (314)
T ss_pred cccCCccccccccceEE-----EcCCCh-hhhhhhhHHHhhhcCceEEeccHHHH--------HHHHHHHHHHhCCCceE
Confidence 7776665 56789886 333333 456777777999877 5554344331 11344556777788544
No 375
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.63 E-value=0.0075 Score=64.08 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=61.3
Q ss_pred eEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhCCCccc--ccccccc----cCC--CCCcc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERGIPAYL--GVLGTKR----LPY--PSRSF 279 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg~~~~~--~~~d~~~----lpf--~~~sF 279 (617)
..++|+|||.|.=+..|++. .++++|+|...+..+..+........+.+ ..+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999765544432 36788888888777765554223222333 3444432 221 12345
Q ss_pred cccccccccccccccc--ceEEEEecc-cccCCceeeecC
Q 007128 280 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFAYSS 316 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~--~~~L~el~R-vLrPGG~lvis~ 316 (617)
.+++.....+.-.++. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 6665543333333322 358899999 999999999953
No 376
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.62 E-value=0.017 Score=65.65 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=38.7
Q ss_pred eeEEEeecccccccccccccc------------hhhhhccCCCccchhhhHHHHHhCCCccccccccccc-----CCCCC
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-----PYPSR 277 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-----pf~~~ 277 (617)
..+|||.|||+|.+...++.. .++++|+++..+..+.............+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 468999999999888776542 3566666665554444332221112222222221111 11125
Q ss_pred cccccccc
Q 007128 278 SFELAHCS 285 (617)
Q Consensus 278 sFDlV~~s 285 (617)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999986
No 377
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=0.026 Score=62.45 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=57.8
Q ss_pred CceeecCCCCccccCchh----hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccc
Q 007128 175 GEKIIFPGGGTHFHYGAD----KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVH 248 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~----~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~ 248 (617)
+-+++|+.+ .|.+... .+...+.+.+.+ +.+ ..+||+-||||.++..+++. .|+|+++++.++.
T Consensus 350 ~ltF~iSp~--AFFQ~Nt~~aevLys~i~e~~~l------~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 350 GLTFRISPG--AFFQTNTSAAEVLYSTIGEWAGL------PAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE 419 (534)
T ss_pred CeEEEECCc--hhhccCcHHHHHHHHHHHHHhCC------CCC--cEEEEEeecCCceehhhhccccceeeeecChhhcc
Confidence 445555443 3555433 344455666665 434 68999999999999999886 6999999999988
Q ss_pred hhhhHHHHHhCC-Ccccccc
Q 007128 249 QNQIQFALERGI-PAYLGVL 267 (617)
Q Consensus 249 ~a~~~~a~~rg~-~~~~~~~ 267 (617)
.|. ..|..+|+ +++|.++
T Consensus 420 dA~-~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 420 DAE-KNAQINGISNATFIVG 438 (534)
T ss_pred hhh-hcchhcCccceeeeec
Confidence 887 56666776 4666665
No 378
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.43 E-value=0.0038 Score=67.79 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=65.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~~s~~l 288 (617)
.+|||+.||+|..+..++.+ .|+++|+++..++..+ +.+...++. +.+...|+..+- .....||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999888764 3889999987766555 333434443 556666655442 1235799997432
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+ ..+..++..+.+.+++||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 22235888899999999999997
No 379
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.39 E-value=0.021 Score=56.94 Aligned_cols=110 Identities=14% Similarity=0.255 Sum_probs=70.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhh-hhcccCC-cchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWC-EAYSTYP-RTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~-e~~~~~p-~tfDlvh~~~~~~~~~~~~ 537 (617)
-++|||||=....+..- .+ |. +|+++|....-+-|.+. |+. -++|+-+ +.||+|.++.|+.+++++.
T Consensus 53 lrlLEVGals~~N~~s~--~~-~f-dvt~IDLns~~~~I~qq-------DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG-WF-DVTRIDLNSQHPGILQQ-------DFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc--cC-ce-eeEEeecCCCCCCceee-------ccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 36999998754433222 12 33 58888853332222222 221 1233333 8999999999999886221
Q ss_pred CCcccchhhccccccCcce-----EEEecCh-h-------HHHHHHHhhhhcccccc
Q 007128 538 CSGEDLLLEMDRILRPTGF-----VIIRDKQ-S-------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~-----~ii~~~~-~-------~~~~~~~~~~~~~w~~~ 581 (617)
.--+.+.-..+.|||+|. ++|--|. + ..+.++.|+.+|++..+
T Consensus 122 -~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 122 -QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred -HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEE
Confidence 122788889999999999 5554443 3 34579999999999986
No 380
>PRK00536 speE spermidine synthase; Provisional
Probab=94.38 E-value=0.0057 Score=63.11 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=63.2
Q ss_pred ccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee------ccc----ccchhhhhhhcccCCcch
Q 007128 453 KIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD------RGL----IGSIHNWCEAYSTYPRTY 521 (617)
Q Consensus 453 ~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~------rgl----~~~~~~~~e~~~~~p~tf 521 (617)
+....+-++||=+|.|-|+.+..+.+.+- +|+-+|. +..++.+.+ .++ +- ++.+.. ....++|
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~-l~~~~~--~~~~~~f 140 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFT-HAKQLL--DLDIKKY 140 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEE-Eeehhh--hccCCcC
Confidence 34457789999999999999999999863 5555554 344333322 011 00 001111 1113789
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
|+|..++.|+ +.....+.|.|+|||.++......
T Consensus 141 DVIIvDs~~~---------~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 141 DLIICLQEPD---------IHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred CEEEEcCCCC---------hHHHHHHHHhcCCCcEEEECCCCc
Confidence 9999987665 345577899999999999976543
No 381
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.38 E-value=0.022 Score=57.06 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred eeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+++|||.|.|.=+.-|+ +.+|+-+|-...-+.--+ +.+.+-+++ +.+....++.+.-....||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~-~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLR-EVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHH-HHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 4689999999996555544 335666655443222111 233455665 77777777776532111999985432
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.+...++.-....+++||.++.--.. .....+.+.+......+|.+.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~------~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL------AGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH------hhhhhHHHHHHHHHhhcCcEE
Confidence 12223455567788999987652111 112224556666666666443
No 382
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.37 E-value=0.0029 Score=63.06 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=58.3
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEE----eeccc---ccchh-hhhhhcccC-----
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLI----YDRGL---IGSIH-NWCEAYSTY----- 517 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~----~~rgl---~~~~~-~~~e~~~~~----- 517 (617)
+...+-++||++|+++|--+.+|++. +..+..+... +...++| ..-|+ |-.++ +..+-++.+
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~ 118 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE 118 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC
Confidence 44456778999999999888888853 4544444432 2333333 22244 22222 222223322
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++||+|..+.-=. +....+...-+.|||||.+|+.+..
T Consensus 119 ~~~fD~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 119 EGQFDFVFIDADKR-------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp TTSEEEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred CCceeEEEEccccc-------chhhHHHHHhhhccCCeEEEEcccc
Confidence 25899998533222 2234555666899999999998765
No 383
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.28 E-value=0.012 Score=58.85 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=62.9
Q ss_pred eEEEeecccccccccccc----cc-hhhhhccCCCccchhhhHHHHHhCCC--ccccccccc-cc-----CCCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLL----SS-DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTK-RL-----PYPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~----~~-~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~-~l-----pf~~~sFDlV 282 (617)
++.||||.=||..+..++ +. .|+++|+.+....... +..+..|+. +.+.++.+. .| ....++||++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 589999977775443333 33 5899999887666664 455555543 444444322 11 1356899999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+. -+|-.....+..++.++||+||.+++.
T Consensus 154 Fv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 FV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 73 345554456888899999999999985
No 384
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.28 E-value=0.0047 Score=62.50 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=67.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-----CCceEEEeeccc--ccchh-hhhhhcccCC--cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-----PNTLKLIYDRGL--IGSIH-NWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-----~~~l~~~~~rgl--~~~~~-~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
.+|+||||.|.|...||.++=.+ |+.+++. ...++.+.+.|+ +-++. |-.+-+..++ ++.|-|+- -|
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 59999999999999999763211 3444432 355556666666 33332 2222234343 48888864 23
Q ss_pred hhhh------hcCCCcccchhhccccccCcceEEEecChh-HHHH-HHHhhhh
Q 007128 531 SDIE------KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDF-VKKYLRA 575 (617)
Q Consensus 531 ~~~~------~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~-~~~~~~~ 575 (617)
++=+ +.|=--...|.++.|+|+|||.|.+..+.+ ..+. +...+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3111 233333578999999999999997776655 4444 4444444
No 385
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.25 E-value=0.031 Score=59.68 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+=+|.|.|+..++.. .|+++|+.|..+.-.+ +.++.+++. +....+|....+..-+.||-|++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~--- 264 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL--- 264 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC---
Confidence 479999999999999998875 3889999997766555 344444443 4566788887776657899998653
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
......++..+.+.+++||.+-+-........+. .....+.......|+
T Consensus 265 --p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 --PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGY 313 (341)
T ss_pred --CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccC
Confidence 2222457888899999999988754333222111 112556666666655
No 386
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.15 E-value=0.0044 Score=62.33 Aligned_cols=114 Identities=19% Similarity=0.303 Sum_probs=69.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe-eccc--------------ccchhhhhhhcccCC----cc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY-DRGL--------------IGSIHNWCEAYSTYP----RT 520 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~-~rgl--------------~~~~~~~~e~~~~~p----~t 520 (617)
.||+-|||.|.-+.+|+++|. +|+.+|. +..++.++ ++++ .+.+.-+|.+|-.++ +.
T Consensus 40 rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp EEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred eEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 599999999999999999997 5666663 33333332 2222 112223444544443 56
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcce--EEEecChh----------HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGF--VIIRDKQS----------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~--~ii~~~~~----------~~~~~~~~~~~~~w~~ 580 (617)
||+|.=...|.-+. ...-.+...-|.++|||||. ++.-+... ..++|++++. -+|++
T Consensus 117 fD~iyDr~~l~Alp--p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i 185 (218)
T PF05724_consen 117 FDLIYDRTFLCALP--PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEI 185 (218)
T ss_dssp EEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEE
T ss_pred ceEEEEecccccCC--HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEE
Confidence 99997444454332 11345777889999999999 43333221 4567888887 56665
No 387
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.12 E-value=0.024 Score=60.28 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=53.2
Q ss_pred ceeEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++.++|||||++|.|+..|.+++ |++||..+-+- .......+.....|..+...+.+.+|+|+|-.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 45799999999999999999875 88888655221 111223455555554443322578999998643
Q ss_pred ccccceEEEEecccccCC
Q 007128 292 LQRDGILLLELDRLLRPG 309 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPG 309 (617)
..+.++..-+.+.|..|
T Consensus 280 -e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -EKPARVAELMAQWLVNG 296 (357)
T ss_pred -cCHHHHHHHHHHHHhcC
Confidence 22334555566666554
No 388
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.12 E-value=0.0078 Score=60.61 Aligned_cols=44 Identities=9% Similarity=0.334 Sum_probs=32.6
Q ss_pred cchhhhhhhhhhh--hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 519 RTYDLLHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 519 ~tfDlvh~~~~~~--~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+-||+|.|-++=. ||--+.-.+...+..+.|.|+|||++|+--.
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 7899988865543 4433334566888999999999999998544
No 389
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.03 E-value=0.0043 Score=60.69 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=68.9
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~ 251 (617)
|..+..|.+. ......+..-+.+.++|.. ..-.+.++||+-||+|.++...+.++ |+.+|.++..+...+
T Consensus 10 gr~l~~p~~~-~~RPT~drvrealFniL~~------~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~ 82 (183)
T PF03602_consen 10 GRKLKTPKGD-NTRPTTDRVREALFNILQP------RNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK 82 (183)
T ss_dssp T-EEE-TT---TS-SSSHHHHHHHHHHHHC------H-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH
T ss_pred CCEecCCCCC-CcCCCcHHHHHHHHHHhcc------cccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 3445555442 2223334555667777764 10123689999999999999888774 778888775544333
Q ss_pred hHHHHHhCCC--ccccccccc-ccC---CCCCcccccccccccccccccc--ceEEEEec--ccccCCceeeecC
Q 007128 252 IQFALERGIP--AYLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQRD--GILLLELD--RLLRPGGYFAYSS 316 (617)
Q Consensus 252 ~~~a~~rg~~--~~~~~~d~~-~lp---f~~~sFDlV~~s~~l~h~~~~~--~~~L~el~--RvLrPGG~lvis~ 316 (617)
+....-+.. ..+...|+. .++ -....||+|++.- ++.... ..++..+. .+|+++|.+++-.
T Consensus 83 -~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 83 -KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 233333332 344444532 221 2457899998642 222111 23444444 7888999998853
No 390
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.95 E-value=0.019 Score=62.01 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=38.5
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTK 270 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~ 270 (617)
+|||+=||.|.++..|++. .|+|+++++.++..|+ +.|..+++ ++.|..++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeecc
Confidence 6999999999999999885 6999999998888887 45555555 4666655544
No 391
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=93.86 E-value=0.015 Score=63.19 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=61.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh---cc-cCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA---YS-TYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~---~~-~~p~tfDlvh~~~~~ 530 (617)
++|||++||+|.|+..|+.++. .|+.+|. +.+++.|.+. |+ ..+...+.+ +. .....||+|..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 4799999999999999998765 4556663 4444444332 22 111111111 11 111458888763
Q ss_pred hhhhhcCCCcc-cchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 531 SDIEKRGCSGE-DLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~-~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.+|..+. .++..+. -++|++.++++..+..+.+ ++.+ -+|+.
T Consensus 308 ----PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l 351 (374)
T TIGR02085 308 ----PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQI 351 (374)
T ss_pred ----CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceE
Confidence 1333322 3333333 4799999999998886554 5555 35765
No 392
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.019 Score=62.05 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred CceeEEEeecccccccccccccc-----h-hhhhccCCCccchhhhHHHHHhCCC-cccccccccccC---CCCCccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS-----D-VITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP---YPSRSFELA 282 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~-----~-V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp---f~~~sFDlV 282 (617)
.++.+|||+.++.|.=+.+|++. . |+++|+++.-+..-. ....+-|+. +.....|...++ ...+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 34489999999999766666654 2 588888885544433 334444554 455566655543 222359999
Q ss_pred ccc-----ccccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 283 HCS-----RCRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 283 ~~s-----~~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
++- ...++-.++ ...+|..+.++|||||.|+.++=...+...+ +.+..++++.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE-----~vV~~~L~~~ 307 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE-----EVVERFLERH 307 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH-----HHHHHHHHhC
Confidence 752 111211010 0248888999999999999987555444333 3355555543
No 393
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.50 E-value=0.009 Score=59.55 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred ccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHH--HHH---
Q 007128 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQF--ALE--- 257 (617)
Q Consensus 187 F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~--a~~--- 257 (617)
|..........+.+.+.. . +....+|||||.|......+-. ..+|+++.+.-...+.... ..+
T Consensus 23 YGEi~~~~~~~il~~~~l------~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~ 94 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL------T--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK 94 (205)
T ss_dssp GGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHhCC------C--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 333334444555555554 3 2368999999999765544422 3778888774333332111 111
Q ss_pred -hCC---CcccccccccccCCCC---CccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 258 -RGI---PAYLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 258 -rg~---~~~~~~~d~~~lpf~~---~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+. ++.+..+|....++.. ..-|+|++++.. +.++....|.++..-||+|-+++-+
T Consensus 95 ~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 95 HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred HhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 121 2344455544332211 246889887653 3344344567777888888777643
No 394
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.42 E-value=0.013 Score=61.01 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHH--------HHHHHHHHHHHHHHhhhhhhhcc
Q 007128 277 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE--------DLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~--------~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
++||+|+..+ ++.-..+.-.+|..+..+|+|||+++=.+|-.|+.... ..-..+++.+++...||+++..+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699997653 23323333458889999999999999888877765441 11224889999999999887654
No 395
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=93.41 E-value=0.023 Score=59.69 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=37.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
..+||.+||.|..+..+++. .|+|+|.++.++..++..... .-++.+...+...
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~ 79 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSN 79 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHH
Confidence 58999999999999988865 489999999877766533322 2234445444443
No 396
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.39 E-value=0.013 Score=58.02 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=59.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDlV 282 (617)
.+|+|+|+-+|+|+..+++. .|+++|+.|.+.... +.+.++|+..-+ +....+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~-----------V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG-----------VIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC-----------ceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 78999999999999988765 389999988654332 444555544322 333457999
Q ss_pred cccccc---ccccccc-------ceEEEEecccccCCceeeecChhh
Q 007128 283 HCSRCR---IDWLQRD-------GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 283 ~~s~~l---~h~~~~~-------~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+|-.+- -++..+. ..++.-+..+|+|||.+++..+..
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 864221 1111110 125556677999999999975443
No 397
>PLN02823 spermine synthase
Probab=93.16 E-value=0.014 Score=62.44 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------c--------ccchhhhhhhcccCCcc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------L--------IGSIHNWCEAYSTYPRT 520 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------l--------~~~~~~~~e~~~~~p~t 520 (617)
.+.++||-+|+|.|+.+..+++. ++ ..|+.++. ++.++++.+.- + ++.--.+- ..-++.
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCC
Confidence 35678999999999999988775 34 24444443 44444443221 0 11111211 122478
Q ss_pred hhhhhhhhhhhhhhhcCCC---cccchh-hccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCS---GEDLLL-EMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~---~~~~l~-Em~RiLrPgG~~ii~~ 561 (617)
||+|.++. +.......|. -...+. .+.|.|+|||.+++..
T Consensus 177 yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999763 2101000010 123555 7899999999998753
No 398
>PRK04148 hypothetical protein; Provisional
Probab=93.07 E-value=0.0052 Score=56.96 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=55.6
Q ss_pred hhHHHhhhcchh-hHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGS-FAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~-fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
+.|||||||+|. +|..|++.|. .|+.+|. ++.++.+.++++-...-|+.++=...=..+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 569999999996 9999999887 6667774 55566666666533333433221110033444332
Q ss_pred CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
||-+.+....+.+++++++=+.+
T Consensus 84 ---------------------irpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 84 ---------------------IRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred ---------------------eCCCHHHHHHHHHHHHHcCCCEE
Confidence 45567777778888888877763
No 399
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.04 E-value=0.004 Score=65.06 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC---cccccccccc-cC-C-CCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKR-LP-Y-PSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~-lp-f-~~~sFDlV~~s~ 286 (617)
++|||+=|=||.|+.+.+.. .|+.+|.|...++.++.+.+. ++++ +.+...|+.. +. . ..+.||+|++.-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 68999999999999876654 489999999888888754443 4443 4566666543 21 1 246899999742
Q ss_pred cc-----cccccccceEEEEecccccCCceeeecC
Q 007128 287 CR-----IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l-----~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
-. .....+...++..+.++|+|||++++++
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 11 1111222347778889999999988764
No 400
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.00 E-value=0.0081 Score=58.13 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=56.2
Q ss_pred hHHHHHHHHH--HHHHhhcc---ccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEE---Eeec----
Q 007128 435 DTESWRNRVD--SYWNLLSP---KIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKL---IYDR---- 501 (617)
Q Consensus 435 D~~~Wk~~V~--~y~~~l~~---~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~---~~~r---- 501 (617)
....|...+- .|...... ......-++||++|||+|-.+.+++.. +. ..|+..|.+..++. ..++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSL 94 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhcccc
Confidence 4567765443 55543210 012234457999999999544444443 11 12333332212111 1111
Q ss_pred --c-cccchhhhhhhc--ccC-CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 502 --G-LIGSIHNWCEAY--STY-PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 502 --g-l~~~~~~~~e~~--~~~-p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+ +-....+|.++. ... ++.||+|.+..++-.-. ..+.++.=++++|+|+|.+++..+.
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~----~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEE----LFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GG----GHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchHH----HHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 1 123445887643 222 27899999877765322 3456777788999999998887764
No 401
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.77 E-value=0.046 Score=56.44 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=48.0
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT 269 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~ 269 (617)
....+.+.+.+.. . +...|||||+|+|.++..|++. .++++++++.....-...+. ...++.+...|+
T Consensus 16 ~~~~~~Iv~~~~~------~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL------S--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC------G--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC------C--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecch
Confidence 4566777777765 2 3368999999999999999876 58888887744322221111 233566666676
Q ss_pred cccCCC
Q 007128 270 KRLPYP 275 (617)
Q Consensus 270 ~~lpf~ 275 (617)
..+...
T Consensus 86 l~~~~~ 91 (262)
T PF00398_consen 86 LKWDLY 91 (262)
T ss_dssp TTSCGG
T ss_pred hccccH
Confidence 665544
No 402
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=92.76 E-value=0.0089 Score=61.61 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=41.2
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCC-cchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYP-RTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++-- .+.+.-.+.++..++ ..||.|.++.=+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc
Confidence 35799999999999999999865 4555563 455555544311 122222223333333 457888765433
No 403
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.68 E-value=0.016 Score=55.57 Aligned_cols=68 Identities=24% Similarity=0.261 Sum_probs=44.6
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC--CCCCc-ccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP--YPSRS-FELAHCS 285 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp--f~~~s-FDlV~~s 285 (617)
.|+|+.||.|..+..++.. .|+++|+++..+.-++ ..|.--|+ ++.+..+|...+. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999886 5999999997776666 45665565 4677778865542 22122 8999876
No 404
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.51 E-value=0.024 Score=58.68 Aligned_cols=132 Identities=21% Similarity=0.321 Sum_probs=81.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch----hhHhhhcCCce----EEEEeecCCC-CCce----E
Q 007128 430 EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG----SFAAALKEKDV----WVMSVVPEDG-PNTL----K 496 (617)
Q Consensus 430 e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G----~fa~~L~~~~~----~v~~v~~~~~-~~~l----~ 496 (617)
..|--+.+.|....+.-...|-. -..++.-+|.-+||++| ++|..|.+... +...|.+.|. ...| .
T Consensus 69 T~FFR~~~~f~~l~~~v~p~l~~-~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 69 TEFFRDPEHFEELRDEVLPELVK-RKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred chhccCcHHHHHHHHHHHHHHHh-hccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 34555666665544432221111 01124556999999999 67777766542 3457777774 2332 3
Q ss_pred EEee-----cccc-------------c--------------chhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccch
Q 007128 497 LIYD-----RGLI-------------G--------------SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLL 544 (617)
Q Consensus 497 ~~~~-----rgl~-------------~--------------~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l 544 (617)
-+|. +|+. | ..|+...+-+ +++-||+|.|-.|+-++... .-..++
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~--~q~~il 224 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE--TQERIL 224 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH--HHHHHH
Confidence 3344 4441 1 1233222211 56889999999999877422 456899
Q ss_pred hhccccccCcceEEEecChhH
Q 007128 545 LEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 545 ~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..+...|+|||++++=++..+
T Consensus 225 ~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 225 RRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHHHHHhCCCCEEEEccCccc
Confidence 999999999999999888654
No 405
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.031 Score=59.05 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=52.1
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccCCC-CCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLPYP-SRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lpf~-~~sFDlV~~s~ 286 (617)
.+|||+|.|+|.-+..+-.- .++.++.++ .+...-...+..-.. +..-......+++++ ...|++|+...
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56999999998655444321 233334333 111111111111111 001111112344544 35688887766
Q ss_pred ccccccccc--ceEEEEecccccCCceeeecChh
Q 007128 287 CRIDWLQRD--GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 287 ~l~h~~~~~--~~~L~el~RvLrPGG~lvis~p~ 318 (617)
-+++..... ...++.+..+++|||.|+|..+.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 555432221 12677888999999999997543
No 406
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.062 Score=52.58 Aligned_cols=131 Identities=22% Similarity=0.210 Sum_probs=73.3
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~ 251 (617)
+..+.+|.+. ......++.-+.+.+++... .-.+.++||+=+|+|.++...+.++ ++.+|.+.......+
T Consensus 11 gr~L~~p~~~-~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 11 GRKLKTPDGP-GTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCcccCCCCC-CcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 4445555542 22233344556666766531 1234689999999999999988874 777777765444333
Q ss_pred hHHHHHhC--CCccccccccccc-CCCCC--cccccccccccccccccc---ce--EEEEecccccCCceeeecC
Q 007128 252 IQFALERG--IPAYLGVLGTKRL-PYPSR--SFELAHCSRCRIDWLQRD---GI--LLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 252 ~~~a~~rg--~~~~~~~~d~~~l-pf~~~--sFDlV~~s~~l~h~~~~~---~~--~L~el~RvLrPGG~lvis~ 316 (617)
+....-+ ..+.+...|+... +-... .||+|+..-- +.... .. .+.+-..+|+|+|.+++-.
T Consensus 84 -~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP---y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 84 -ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP---YAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred -HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC---CccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 2222223 3455555565432 22222 4999985422 11110 11 1222457799999999953
No 407
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.37 E-value=0.013 Score=58.06 Aligned_cols=95 Identities=7% Similarity=0.021 Sum_probs=48.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..++.++. -.|+.++. +..++.+.+. |+ +-.++ |..+.+......||+|.++==|.
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 699999999999985444432 13444443 2332222111 11 11111 22222221225699998743321
Q ss_pred hhhcCCC-cccchhhc--cccccCcceEEEecCh
Q 007128 533 IEKRGCS-GEDLLLEM--DRILRPTGFVIIRDKQ 563 (617)
Q Consensus 533 ~~~~~c~-~~~~l~Em--~RiLrPgG~~ii~~~~ 563 (617)
.. .+.++.-+ ..+|+|+|.+++....
T Consensus 133 -----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 -----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 12233322 3468999999999775
No 408
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=92.25 E-value=0.05 Score=57.01 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=38.7
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..||+|.|..||.|+... ....++..+.+.|+|||++++-+....
T Consensus 222 ~~fD~I~cRNvliyF~~~--~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDKT--TQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred CCcceeeHhhHHhcCCHH--HHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 899999999999988422 567899999999999999999887543
No 409
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.16 E-value=0.011 Score=61.35 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR 501 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r 501 (617)
..|||+|||+|.++..|++++. .|+.+|. +.|++.+.++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 4699999999999999999865 5666774 6777766554
No 410
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.15 E-value=0.051 Score=55.97 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhccccc
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~ 580 (617)
.|+.||+|.+...+...-...-....++..|-+.|||||.||+..-.. ..+.|++.++..+.++
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEE
Confidence 456799987666555332222234589999999999999999876543 4567999999999987
Q ss_pred ccccccCCCCCCCCCCeEEEEEEe
Q 007128 581 VATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+ ... .....-..+...+|+|||
T Consensus 235 ~-~~~-~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 235 E-DLE-KQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp E-EEE-G-TTTB---EEEEEEEEE
T ss_pred E-ecc-cccCcCCCCcEEEEEEeC
Confidence 4 222 112333356677888887
No 411
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.02 E-value=0.012 Score=59.06 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=61.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh--hhhhhccc-CCc
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH--NWCEAYST-YPR 519 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~--~~~e~~~~-~p~ 519 (617)
+...+-++||.+|.+.|--|.+|+.. +. -++.++. +++.++|++- |+ |-.+. ++-+-++. ...
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g---~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~ 131 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDG---RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDG 131 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCC---eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCC
Confidence 34457788999999999888888742 33 2444442 4444444322 33 22222 55555663 569
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+||+|..+.- .-+....+.+.-+.|||||.+|+.+
T Consensus 132 ~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 132 SFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred CccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 9999985222 2245677888889999999997754
No 412
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.81 E-value=0.3 Score=48.60 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=69.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---c--eEEEEeecCCCCCceEEEeecccc---cchhhhhhhcccCCcchhhhhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEK---D--VWVMSVVPEDGPNTLKLIYDRGLI---GSIHNWCEAYSTYPRTYDLLHAWTVF- 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~--~~v~~v~~~~~~~~l~~~~~rgl~---~~~~~~~e~~~~~p~tfDlvh~~~~~- 530 (617)
..|+|+||-+||.+-.++++ + +....|.|++....+..+ +|-+ .......+.+.. ..+|+|.++..=
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~l~~--~~~DvV~sD~ap~ 122 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEALGG--APVDVVLSDMAPN 122 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHHcCC--CCcceEEecCCCC
Confidence 35999999999998877654 2 344555555532223332 2321 122222333333 446777532221
Q ss_pred -------hhhhhcCCCcccchhhcc-ccccCcceEEEecChh-----HHHHHHHhhhhcccccccccccCCCCCCCCCCe
Q 007128 531 -------SDIEKRGCSGEDLLLEMD-RILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEAVATTADASSDSDKDGDE 597 (617)
Q Consensus 531 -------~~~~~~~c~~~~~l~Em~-RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 597 (617)
.|... -.+..+..||. ++|+|||.|++..... .+..++.....+.=... +.- -+.+.|
T Consensus 123 ~~g~~~~Dh~r~--~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP------~aS-R~~S~E 193 (205)
T COG0293 123 TSGNRSVDHARS--MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKP------KAS-RKRSRE 193 (205)
T ss_pred cCCCccccHHHH--HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecC------ccc-cCCCce
Confidence 11100 01234555555 4999999999987654 45555555554433221 111 123458
Q ss_pred EEEEEEe
Q 007128 598 VVFIVQK 604 (617)
Q Consensus 598 ~~l~~~K 604 (617)
-+++|.+
T Consensus 194 ~y~v~~~ 200 (205)
T COG0293 194 IYLVAKG 200 (205)
T ss_pred EEEEEec
Confidence 8888865
No 413
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=91.76 E-value=0.016 Score=59.35 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=61.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEe----eccc---ccchh-hhhh-hcc-cCCcc
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIY----DRGL---IGSIH-NWCE-AYS-TYPRT 520 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~----~rgl---~~~~~-~~~e-~~~-~~p~t 520 (617)
|..|. .||+.|.|+|+++.+|+.. ...|.+..-- ++..+.|. +-|+ +...| |.|+ -|. ...+.
T Consensus 38 i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~--~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 38 IRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFR--EDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp --TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred CCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccC--HHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 44444 5999999999999999853 2334333322 22222222 2244 23333 5663 342 12356
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccc-cCcceEEEecC-hhHHHHHHHhhhhcccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRIL-RPTGFVIIRDK-QSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiL-rPgG~~ii~~~-~~~~~~~~~~~~~~~w~~~ 581 (617)
||.|. -++. ++-.+|.-+.++| ||||.+++-.+ .+-+.++-..++..+|..|
T Consensus 114 ~Davf-----LDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 114 FDAVF-----LDLP----DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEEE-----EESS----SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred ccEEE-----EeCC----CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 67655 3444 6677888888999 99999976654 3333344444555577665
No 414
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=91.35 E-value=0.029 Score=56.21 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=73.7
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccccccccc---CCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL---PYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l---pf~~~sFDlV~~s 285 (617)
++.+||-+|+.+|+...++.+- .|.++++|+..... .+..|.+|. ++.-...|+..- ..--+..|+|++.
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rd-L~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRD-LLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH-HHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHH-HHHHhccCC-ceeeeeccCCChHHhhcccccccEEEec
Confidence 3479999999999888887652 48899999955433 335666653 433233444321 1112478999854
Q ss_pred ccccccccccceEEEEecccccCCceeeecChhh--hc-CCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA--YA-QDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~-~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
-+ -.+....++.++...||+||+++++.... .. ..+ ...|.+-.+.++..+|+..
T Consensus 151 Va---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP--EEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--HHHHHHHHHHHHCTTCEEE
T ss_pred CC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--HHHHHHHHHHHHHcCCChh
Confidence 22 22332457788889999999999875332 21 222 2346555556666677654
No 415
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.19 E-value=0.044 Score=54.27 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=33.1
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..||+|.|-.|+-++... ....++.-+.+.|+|||++++-.....
T Consensus 135 ~~fD~I~CRNVlIYF~~~--~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 135 GRFDLIFCRNVLIYFDPE--TQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp --EEEEEE-SSGGGS-HH--HHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred CCccEEEecCEEEEeCHH--HHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 999999999999987532 446899999999999999999888643
No 416
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.88 E-value=0.069 Score=55.36 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=41.6
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh-----h-----------HHHHHHHhhhhcccccc
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----S-----------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----~-----------~~~~~~~~~~~~~w~~~ 581 (617)
++||.|...-...-.+ ++.+.|..|.++|||||+.|=--|. + ..++|+.+++.++|+.+
T Consensus 164 ~~~d~VvT~FFIDTA~----Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 164 GSFDVVVTCFFIDTAE----NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CcccEEEEEEEeechH----HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 4889876432222122 6677888999999999976522211 1 47899999999999985
No 417
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=0.013 Score=55.51 Aligned_cols=74 Identities=19% Similarity=0.396 Sum_probs=50.9
Q ss_pred CCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhccC-ceEE
Q 007128 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRN-QTVV 353 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~~-~~~i 353 (617)
..++||+|+|+.|++ +.+.-..+++.+.+.|+|.|..++..|..... .+.+.+.....||.+.-.++ +..+
T Consensus 100 eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s-------L~kF~de~~~~gf~v~l~enyde~i 171 (201)
T KOG3201|consen 100 EQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQS-------LQKFLDEVGTVGFTVCLEENYDEAI 171 (201)
T ss_pred hhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecCcccch-------HHHHHHHHHhceeEEEecccHhHHH
Confidence 346899999999964 44443568889999999999988876654322 34566667777887654443 3445
Q ss_pred Eec
Q 007128 354 WQK 356 (617)
Q Consensus 354 w~k 356 (617)
|++
T Consensus 172 wqr 174 (201)
T KOG3201|consen 172 WQR 174 (201)
T ss_pred HHH
Confidence 654
No 418
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.82 E-value=0.084 Score=56.27 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=68.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccch---hhhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSI---HNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~---~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
+|||==||||||.....=.|. ++...|. ..|+.-|.. .| +-.+ ..|......++ ++||.|.++-=.-
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~-Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKI-NLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhh-hhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 499999999999877666666 6777775 566554322 22 1111 12222222255 5699987532111
Q ss_pred hhh-hcCC----CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 532 DIE-KRGC----SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~-~~~c----~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
... ...- -..++|.++.++|++||++++--+...++++.+ +.|+++
T Consensus 276 rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~----~~f~v~ 326 (347)
T COG1041 276 RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE----LGFKVL 326 (347)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh----cCceEE
Confidence 000 0111 135789999999999999999998666655444 455554
No 419
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=90.60 E-value=0.017 Score=56.92 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=57.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.++||+|||-|-++..|+.. +--|-+.+. ..|......++. +=...+|.+. +=.||+|-|-.++..-.
T Consensus 114 ~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc~--- 183 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRCF--- 183 (288)
T ss_pred eeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhhc---
Confidence 45999999999999888763 112333332 234332223332 2223455411 12399999988887433
Q ss_pred CCcccchhhccccccC-cceEEEe
Q 007128 538 CSGEDLLLEMDRILRP-TGFVIIR 560 (617)
Q Consensus 538 c~~~~~l~Em~RiLrP-gG~~ii~ 560 (617)
++-.+|.++.-+|+| .|.+|+.
T Consensus 184 -~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 -DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -ChHHHHHHHHHHhccCCCcEEEE
Confidence 566899999999999 9998875
No 420
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=90.45 E-value=0.041 Score=58.61 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccC--CcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~~~~ 537 (617)
..+||+||.+|||+-.|+++|. .|+.+|...|-+...+-+.+-.+.. ..|... ++.+|+|.|+.+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv-------- 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV-------- 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc--------
Confidence 3699999999999999999987 4555664333333333333211111 112111 478999999555
Q ss_pred CCcccchhhccccccCc--ceEEEecC
Q 007128 538 CSGEDLLLEMDRILRPT--GFVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPg--G~~ii~~~ 562 (617)
|.+..++.=|.+.|..| ..+|+.=+
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 34566777777888776 34555433
No 421
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.35 E-value=0.072 Score=52.95 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=62.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhhhHHHHHhCCCccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQIQFALERGIPAYLGVLG 268 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d 268 (617)
..|...+++.+.. ++ .+||.||-|-|.....+.++. -+.++..+. +-+.+...+-...-++.+..+-
T Consensus 88 tpiMha~A~ai~t------kg---grvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~-V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 88 TPIMHALAEAIST------KG---GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPD-VLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hHHHHHHHHHHhh------CC---ceEEEeccchHHHHHHHhhcCCcceEEEecCHH-HHHHHHhcccccccceEEEecc
Confidence 3455666666654 33 599999999998887776652 123344442 2112212221111123322222
Q ss_pred ccc-c-CCCCCccccccccccccccccccceEEEEecccccCCceeee
Q 007128 269 TKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 269 ~~~-l-pf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvi 314 (617)
-++ + .++++.||-|.-. +.-+..++...+.+.+.|+|||+|.+-+
T Consensus 158 WeDvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hHhhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 111 1 2578889999743 2223334444566788999999998876
No 422
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=90.20 E-value=0.099 Score=56.47 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=59.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc------ccchhhhhhhccc---C---------
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL------IGSIHNWCEAYST---Y--------- 517 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl------~~~~~~~~e~~~~---~--------- 517 (617)
.|||++||+|.|+.+|++... .|+.+|. +.+++.|.+. |+ .+...++...... +
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 399999999999999988644 4566663 4555554433 21 1222222211100 1
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcc-cchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGE-DLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~-~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
...||+|.. ..+|..+. .++ +.+++|++.++|+-.+..+.+ ++.+.+. |+.
T Consensus 277 ~~~~d~v~l-------DPPR~G~~~~~l---~~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l 329 (353)
T TIGR02143 277 SYNCSTIFV-------DPPRAGLDPDTC---KLVQAYERILYISCNPETLKANLEQLSET--HRV 329 (353)
T ss_pred cCCCCEEEE-------CCCCCCCcHHHH---HHHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEE
Confidence 012566553 12343322 232 345669999999988886553 6666555 665
No 423
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=89.64 E-value=0.22 Score=54.38 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=69.2
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
+.|||+=|-||+|+.+.+..|. .|++|.... ..|+.|.+. |+ .+++-.|-+....=-.+||+|..
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 3699999999999999999888 666665433 333333332 33 23333333222211149999962
Q ss_pred ---------hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhc
Q 007128 527 ---------WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRAL 576 (617)
Q Consensus 527 ---------~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~ 576 (617)
.+.|+-.. +..+++..--+||+|||.++++.... .++.|..-+..+
T Consensus 297 DPPsF~r~k~~~~~~~r----dy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 297 DPPSFARSKKQEFSAQR----DYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred CCcccccCcccchhHHH----HHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 22233222 45578899999999999999987654 344455555555
No 424
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.30 E-value=0.12 Score=55.00 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=74.1
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-------CCCccccccccccc-CCCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-------GIPAYLGVLGTKRL-PYPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-------g~~~~~~~~d~~~l-pf~~~sFDlV 282 (617)
.++||-+|.|.|.-++.|.+. +|+-+|++|.|++.+....+... ...+.+...|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 478999999999999999875 58889999999887763333222 12234444444332 2234589999
Q ss_pred cccccccccccccc---------eEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 283 HCSRCRIDWLQRDG---------ILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 283 ~~s~~l~h~~~~~~---------~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
+.. ..++.. .+-.-+.|.|+++|.+++..-..+..... |=.+...++++||.
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v----fw~i~aTik~AG~~ 430 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV----FWRIDATIKSAGYR 430 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce----eeeehhHHHhCcce
Confidence 843 222211 13334567889999999965444433321 22345566777764
No 425
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.82 E-value=0.51 Score=47.81 Aligned_cols=121 Identities=16% Similarity=0.258 Sum_probs=71.4
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCccc-ccccccccC---CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYL-GVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~-~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
++.+||+|+.||.|+..++++ .|+++|+.-..++. ..+....+.. ...++..+. +. +..|+++|.-+
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvS 153 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVS 153 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEee
Confidence 479999999999999999987 48899886654433 2233222221 122233222 22 26788887655
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhc-------------CCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA-------------QDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~-------------~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
++. ...+|-.+..+|+|+|.++.-.-+... ........-..+.+.+...||...
T Consensus 154 FIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 154 FIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred hhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 332 235777888889998877764322210 011112233667777777777543
No 426
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.80 E-value=0.17 Score=54.64 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=54.2
Q ss_pred eEEEeecccccccccccccch-------------------------------------------hhhhccCCCccchhhh
Q 007128 216 RTVLDVGCGVASFGAYLLSSD-------------------------------------------VITMSLAPNDVHQNQI 252 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~-------------------------------------------V~gvDis~~dl~~a~~ 252 (617)
..++|-=||+|+++...+-.. ++|+|+++.++..|+
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 579999999998765443211 559999999998887
Q ss_pred HHHHHhCCC--cccccccccccCCCCCcccccccc
Q 007128 253 QFALERGIP--AYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 253 ~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
..|++.|+. +.|.++|+..++-+-+.+|+|+|+
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 677777876 788899998887554789999987
No 427
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=88.67 E-value=0.091 Score=56.95 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=58.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc------ccchhhhhhhccc---C---------
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL------IGSIHNWCEAYST---Y--------- 517 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl------~~~~~~~~e~~~~---~--------- 517 (617)
.|||++||+|+|+.+|++..- .|+.+|. +.+++.|.+. |+ .+.+.++...+.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 499999999999999987644 3555553 4555444432 22 1222222211110 0
Q ss_pred CcchhhhhhhhhhhhhhhcCCCc-ccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSG-EDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~-~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
...||+|.. ..+|-.+ +.++ ..+++|++.++++-.+..+-+ ++.+.+ +|+.
T Consensus 286 ~~~~D~v~l-------DPPR~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l 338 (362)
T PRK05031 286 SYNFSTIFV-------DPPRAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKV 338 (362)
T ss_pred CCCCCEEEE-------CCCCCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEE
Confidence 014787765 1123221 1222 345568999999988876554 666654 6765
No 428
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.59 E-value=0.55 Score=47.32 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=60.4
Q ss_pred CchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccc----cccccccchhhhhccCCCccchhhhHHHHHhCCCcc-
Q 007128 189 YGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVAS----FGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAY- 263 (617)
Q Consensus 189 ~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~----~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~- 263 (617)
.++..|+..++++|....+.+. ++.-++||||.|.-- ++.+.-.-..+|.|+++..++.|+.......++...
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 3567899999999987544443 445789999988763 233333335788888888777776544443233211
Q ss_pred -ccc-cccc----ccCCCCCcccccccccccccc
Q 007128 264 -LGV-LGTK----RLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 264 -~~~-~d~~----~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.. -|.. .+--.++.||++.|+--++..
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchh
Confidence 111 1111 111235789999998764433
No 429
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=88.51 E-value=0.05 Score=55.80 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=27.6
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY 499 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~ 499 (617)
.-..|||+|||+|.++..|+++... |+.+|. +.+++.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILR 68 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHH
Confidence 3457999999999999999987653 444443 45544443
No 430
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=88.46 E-value=0.19 Score=49.06 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=54.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-----CCCcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-----GIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-----g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+.|+|+|+|.++...++. +|++++..|.-. +.|.++ ..++.+.++|+....| ...|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37999999999776555443 688888877432 233333 2356778888888888 368999985310
Q ss_pred cccc-cccceEEEEecccccCCceee
Q 007128 289 IDWL-QRDGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 289 ~h~~-~~~~~~L~el~RvLrPGG~lv 313 (617)
-... ......+..+...||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 0011 111224444444556666554
No 431
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.42 E-value=0.16 Score=44.43 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHhhhcchhhHhhhcCC----c-eEEEEeecCCC-CCceEEEeecccccchhhhh----hhcccCC-cchhhhhhhh--h
Q 007128 463 MDMKAHLGSFAAALKEK----D-VWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWC----EAYSTYP-RTYDLLHAWT--V 529 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~----~-~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~----e~~~~~p-~tfDlvh~~~--~ 529 (617)
|.+|+..|..+..|++. + ..+..|.+... +...+++.+.++-..++-.. +-++.++ ..||+|+-+. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 57898899888777753 2 13445555442 23444444445522222111 2244555 8999998433 3
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.. ....+..+.+.|+|||.+++-|
T Consensus 81 ~~~-------~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 YEA-------VLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHH-------HHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHH-------HHHHHHHHHHHcCCCeEEEEeC
Confidence 332 2345677778999999999876
No 432
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=88.40 E-value=0.25 Score=45.96 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=30.9
Q ss_pred CceeEEEeeccccccccccccc-----c---hhhhhccCCCccchhh
Q 007128 213 GRLRTVLDVGCGVASFGAYLLS-----S---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~-----~---~V~gvDis~~dl~~a~ 251 (617)
.+..+|+|+|||.|.++..|+. . .|+++|..+..++.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~ 70 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ 70 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH
Confidence 3457899999999999988887 3 5889998887665554
No 433
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.22 E-value=0.66 Score=45.90 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=23.5
Q ss_pred cchhhccccccCcceEEEecCh-hHHHHHHHhhhhc
Q 007128 542 DLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRAL 576 (617)
Q Consensus 542 ~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~ 576 (617)
..|.|..=+||+||.++..... +.-+.|.+.+.+-
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h 199 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH 199 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence 5677888899999999765554 4444455555444
No 434
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=87.66 E-value=0.039 Score=58.06 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
.|||+|||+|.++..|++.+. .|+.+|. +++++.+.++ |+.+.+.-.+.++..++ ..||+|.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVAN 108 (294)
T ss_pred EEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEec
Confidence 699999999999999998765 4555563 4565555443 22122221222322233 567887764
No 435
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.93 E-value=0.29 Score=46.72 Aligned_cols=51 Identities=10% Similarity=0.331 Sum_probs=38.8
Q ss_pred cccCCcchhhhhhhhhhhhhh----hcCCC---cccchhhccccccCcceEEEecChh
Q 007128 514 YSTYPRTYDLLHAWTVFSDIE----KRGCS---GEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 514 ~~~~p~tfDlvh~~~~~~~~~----~~~c~---~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+-.|.++||.+-|.+++.|.- ...-| -...|+++.|+|||||.+++.-|.-
T Consensus 57 ~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 57 WQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred HHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 346889999999999998743 11111 1378899999999999999998864
No 436
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.90 E-value=0.12 Score=53.88 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=67.1
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEee--cccccchhh-hhhhc----ccCCcchhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYD--RGLIGSIHN-WCEAY----STYPRTYDLLHAWT 528 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~--rgl~~~~~~-~~e~~----~~~p~tfDlvh~~~ 528 (617)
.-+.|||+|||+|+-.-+..+. + ....++.+|. +.|++++.. +......+. |-..+ ..+ ...|||.+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEeh
Confidence 3456999999999755444432 2 2346667774 566553221 111111111 21111 111 3349999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh-----HHHHHHHhhhhccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~ 580 (617)
++..+.. -....++..|=+.+.+ ++||-++-. .+.++++.+...++.+
T Consensus 111 ~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 111 VLNELPS--AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred hhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 9998863 3445566555454555 888888754 5667777776655554
No 437
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=86.68 E-value=0.19 Score=46.27 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.0
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhh
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~ 251 (617)
++||||||.|.++..++.. .++++|.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999998888754 4888999887666555
No 438
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=86.55 E-value=0.024 Score=49.79 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=35.6
Q ss_pred Eeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc--CCCCCcccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL--PYPSRSFELAHCSRC 287 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l--pf~~~sFDlV~~s~~ 287 (617)
||||+..|..+..+++. .++++|..+. .+..+ +..++.+. .+.+..++.... .++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777653 3778887773 11111 22222222 355555554322 122568999986532
Q ss_pred ccccccccceEEEEecccccCCceeeec
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|-.......+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22222245678889999999999874
No 439
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=86.47 E-value=0.064 Score=55.02 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=52.9
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEE----eeccc---ccchh-hhhhhccc------
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLI----YDRGL---IGSIH-NWCEAYST------ 516 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~----~~rgl---~~~~~-~~~e~~~~------ 516 (617)
+...+-++||++|+++|--|.+|+.. +..+..+... +...++| ..-|+ |-.++ +..+-++.
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc
Confidence 34456778999999999777666642 3444444432 2222222 22243 21111 11122222
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.+||+|..+.-=. .....+...-+.|||||.+++.+
T Consensus 153 ~~~~fD~iFiDadK~-------~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 153 YHGTFDFIFVDADKD-------NYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cCCcccEEEecCCHH-------HhHHHHHHHHHhcCCCeEEEEcC
Confidence 346899998533211 12234444458999999988764
No 440
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.43 E-value=0.043 Score=53.56 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=60.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc--cccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG--LIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg--l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.|+|+|||+|.||-..+-.|.. .|..+|. +..++++.+.- +.|.+-..+.+.+.+..-||.|..+==|- .+...
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG-~~~rh 124 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG-SQRRH 124 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc-ccccc
Confidence 4999999999877666655531 2344442 34444443321 34555555667777778888765433333 11122
Q ss_pred CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
-|.+.++. -|+=.=.++=.+.....+-+++.....+..+
T Consensus 125 aDr~Fl~~----Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 125 ADRPFLLK----ALEISDVVYSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred CCHHHHHH----HHHhhheEEEeeccccHHHHHHHHHhcCCeE
Confidence 34443222 1111223444445556667777777776554
No 441
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=85.61 E-value=0.14 Score=53.79 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEee----ccc---ccchhhhhhhcccCCcchhhhhh----h
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYD----RGL---IGSIHNWCEAYSTYPRTYDLLHA----W 527 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~----rgl---~~~~~~~~e~~~~~p~tfDlvh~----~ 527 (617)
-|.|||+|||.|.+...-+..|.. .|-++++.+|.+.|.. ..+ |.++-.--|++. .|...|+|.+ +
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccchh
Confidence 455999999999877655555542 3444455556443321 111 334444445554 6788898864 2
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.++. . .+...-+--+|.|+|.|...
T Consensus 255 mL~N----E--RMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVN----E--RMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhh----H--HHHHHHHHHHhhcCCCCccc
Confidence 2222 0 11222233459999999764
No 442
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.59 E-value=0.47 Score=46.95 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=75.3
Q ss_pred CceeEEEeecccccccccccccc---h-hhhhccCCCccchhhhHHHHHhCCCcccccccccccC----CCCCccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS---D-VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----YPSRSFELAHC 284 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~---~-V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----f~~~sFDlV~~ 284 (617)
.++.+||=+|+.+|+...++.+- + +.++++|+.....-. ..+.+|. ++.=...|+. .| +-=+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~-Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRP-NIIPILEDAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCC-CceeeecccC-CcHHhhhhcccccEEEE
Confidence 44579999999999888777652 3 889999997765544 5665553 2222223332 22 11245788874
Q ss_pred cccccccccccceEEEEecccccCCceeeecChhhh-cCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 285 SRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 285 s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.-+ -.+....+..++...|++||+++++..... .........|.+-..-++..+|++.+.
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 321 112223477888999999998887532211 011112344655555556667776543
No 443
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=85.38 E-value=0.49 Score=49.78 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=46.1
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC--ccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP--AYL 264 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~--~~~ 264 (617)
+..|+..+.++|......+ ...-++||||+|.-.+=-.|. .-.++|.|+++..++.|+....+..++. +.+
T Consensus 82 R~nYi~~i~DlL~~~~~~~---~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGI---PEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHHT--TCGC---S---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred hHHHHHHHHHHhhcccccc---ccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 3578888888887622111 114689999999874332232 2258899999988888875444432443 222
Q ss_pred ccccc-----cccCCCCCcccccccccc
Q 007128 265 GVLGT-----KRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 265 ~~~d~-----~~lpf~~~sFDlV~~s~~ 287 (617)
..... ..+-.+++.||+..|+--
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EEcCCccccchhhhcccceeeEEecCCc
Confidence 21111 112223467999988754
No 444
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.90 E-value=1.2 Score=47.83 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCceeEEEeecccccccccccccch--------------------hhhhccCCCccchhhhHHHHH-----hCCCccc-
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSSD--------------------VITMSLAPNDVHQNQIQFALE-----RGIPAYL- 264 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~~--------------------V~gvDis~~dl~~a~~~~a~~-----rg~~~~~- 264 (617)
...+.-+|+|+||..|..+..+...= |.--|+-.+|-+.-....... ...++..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 34456789999999997776665431 122233333332222111111 1111111
Q ss_pred -ccccccccCCCCCccccccccccccccccccc
Q 007128 265 -GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 296 (617)
Q Consensus 265 -~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~ 296 (617)
.-++...--||+++.|+++++.+ +||....+
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP 124 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYA-LHWLSQVP 124 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES--TTB-SSS-
T ss_pred ecCchhhhccCCCCceEEEEEech-hhhcccCC
Confidence 11233444488999999999987 78987643
No 445
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.85 E-value=0.039 Score=57.75 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=64.6
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-ccccccccccc-C-CCCCccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRL-P-YPSRSFELAHC-- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~l-p-f~~~sFDlV~~-- 284 (617)
+.+|||+.++.|.=+.++++. .+++.|++..-+..-. ....+-|+. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 367999999999777666653 4788888775544433 233344554 33333555444 1 23346999975
Q ss_pred --ccc-ccc------cccc----------cceEEEEecccc----cCCceeeecChhhhcCC
Q 007128 285 --SRC-RID------WLQR----------DGILLLELDRLL----RPGGYFAYSSPEAYAQD 323 (617)
Q Consensus 285 --s~~-l~h------~~~~----------~~~~L~el~RvL----rPGG~lvis~p~~~~~~ 323 (617)
+.. .+. |... ...+|..+.+.+ ||||+++.++=...+..
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 211 111 1000 024788899999 99999999875554443
No 446
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.49 E-value=0.14 Score=51.00 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=66.2
Q ss_pred EEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCC-ccccccccccccc
Q 007128 218 VLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSR-SFELAHCSRCRID 290 (617)
Q Consensus 218 VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~-sFDlV~~s~~l~h 290 (617)
|.||||--|.+..+|.+. .++++|+++.-+..|+...+. .++. +.+..+|... +++.+ ..|.|+.+.+-=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 689999999999999986 488999999888877754443 4432 4455555332 22333 3788876542111
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.. ...|.+....++..-.|++. |.. ....+++.+.++||.++++
T Consensus 79 lI---~~ILe~~~~~~~~~~~lILq-P~~---------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 LI---IEILEAGPEKLSSAKRLILQ-PNT---------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HH---HHHHHHTGGGGTT--EEEEE-ESS----------HHHHHHHHHHTTEEEEEE
T ss_pred HH---HHHHHhhHHHhccCCeEEEe-CCC---------ChHHHHHHHHHCCCEEEEe
Confidence 11 12444444555555567664 211 1357889999999977654
No 447
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=84.46 E-value=1.7 Score=47.52 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
..--||+++.+++|++.+ +||....+.-+..-....--.|.+++.
T Consensus 154 Y~RLfP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~ 198 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIH 198 (386)
T ss_pred cccccCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEec
Confidence 334489999999999988 689876544332111111135666664
No 448
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=84.41 E-value=0.23 Score=51.29 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=51.6
Q ss_pred ceeEEEeeccccc--cccccccc-----chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----------C--
Q 007128 214 RLRTVLDVGCGVA--SFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----------Y-- 274 (617)
Q Consensus 214 ~~~~VLDVGCG~G--~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----------f-- 274 (617)
..+..||||||-- .....+++ ..|.-+|..|.-+..++.-.+....-...+..+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 3678999999954 33444433 258888999877666653333222112556666654321 0
Q ss_pred CCCccccccccccccccccc---cceEEEEecccccCCceeeecChhh
Q 007128 275 PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~---~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+...=+++ ..++||..+ +..++..+...|.||.+|+|+....
T Consensus 148 ~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 148 FDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 012232333 234566544 2458999999999999999985543
No 449
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=84.34 E-value=0.45 Score=49.92 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=38.9
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE--------EecChh---------HHHHHHHhhhhcccccc
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI--------IRDKQS---------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i--------i~~~~~---------~~~~~~~~~~~~~w~~~ 581 (617)
++||+|...-...-.+ ++-+.|.-+..+|+|||..| +.|+.. ..+.|..+++.++|+.+
T Consensus 258 ~~~d~VvTcfFIDTa~----NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ 333 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAH----NILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVE 333 (369)
T ss_pred CccceEEEEEEeechH----HHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEE
Confidence 4699986321111111 44456666778999999986 333221 56789999999999985
No 450
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=83.61 E-value=0.16 Score=53.21 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=59.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe------------ecc--cccchhhhhhhcccCC
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY------------DRG--LIGSIHNWCEAYSTYP 518 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~------------~rg--l~~~~~~~~e~~~~~p 518 (617)
+..++.|+||=+|-|.|+.+..+.+.+- +-.++.++. ++.++.++ .|- +|+.--.|-. .++
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~---~~~ 147 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR---DCE 147 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH---hCC
Confidence 4456668999999999999999998752 123333332 23322221 111 1333333333 345
Q ss_pred cchhhhhhhhhhhhhhhcCCC--cccchhhccccccCcceEEEe
Q 007128 519 RTYDLLHAWTVFSDIEKRGCS--GEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~--~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.+||+|..+..=. . .+... =........|.|+|+|.++..
T Consensus 148 ~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 7999998643333 1 01000 135777889999999999998
No 451
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=83.45 E-value=0.095 Score=52.56 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEE--EeecCCCCCceEEEeec-ccccchhhhhhhcccCC---cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVM--SVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYP---RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~--~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p---~tfDlvh~~~~~~ 531 (617)
+||-+|+.+|+....+.+- ...|- ...|-...+.+.+|..| .+++.+.|-..+. .|. ...|+|.+
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~~lv~~VDvI~~----- 149 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYRMLVEMVDVIFQ----- 149 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGTTTS--EEEEEE-----
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-HhhcccccccEEEe-----
Confidence 5999999999888777642 22222 22332224666677676 4666666644221 122 45566554
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
++. ..-..+-++.-++..||+||.++|.-... +..+-.+-++.-+++.+ +..+ .||+..+ -.+++
T Consensus 150 DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~-e~i~--LePy~~d-H~~vv 224 (229)
T PF01269_consen 150 DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL-EQIT--LEPYERD-HAMVV 224 (229)
T ss_dssp E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE-EEEE---TTTSTT-EEEEE
T ss_pred cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh-eEec--cCCCCCC-cEEEE
Confidence 332 11133457778889999999999876553 22233334444566766 4555 7775433 34444
Q ss_pred EE
Q 007128 602 VQ 603 (617)
Q Consensus 602 ~~ 603 (617)
++
T Consensus 225 ~~ 226 (229)
T PF01269_consen 225 GR 226 (229)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 452
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=83.23 E-value=0.37 Score=47.35 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=62.3
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC--CC------ceEEEeecccccchhhhhh---hcccCCcchhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG--PN------TLKLIYDRGLIGSIHNWCE---AYSTYPRTYDLLHA 526 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~--~~------~l~~~~~rgl~~~~~~~~e---~~~~~p~tfDlvh~ 526 (617)
+|.|+=-|-|-|++-|... ...|.+++|.+. .. +-..+.|.+. .+..-... .+. -|.-.|++..
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq~~d~~~~ 128 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQKLDLVPT 128 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCCccccccc
Confidence 5999999999999888754 237889998874 11 1112222222 11111111 112 2377777765
Q ss_pred hhhhhhhh---hcCCCcccchhhccccccCcceEEEecChh
Q 007128 527 WTVFSDIE---KRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 527 ~~~~~~~~---~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..+.++ .+--...++-.++.+.|||||.+.+-|.+.
T Consensus 129 ~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 129 AQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred chhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 44444332 122344688999999999999999888765
No 453
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=82.80 E-value=0.63 Score=45.76 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred eeEEEeecccccccccccccc----h-hhhhccCCCcc-----ch-hhhH-HHHHhC-CCcccccccccccCCCCCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----D-VITMSLAPNDV-----HQ-NQIQ-FALERG-IPAYLGVLGTKRLPYPSRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~-V~gvDis~~dl-----~~-a~~~-~a~~rg-~~~~~~~~d~~~lpf~~~sFDl 281 (617)
+.+|+|+=.|.|.|++-+... + |++ +.+.+. .. .+.. .+++.. -++...-.+...++ +.+..|+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~--~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYA--YVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEE--ecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 479999999999999888764 2 332 222222 11 1111 111111 11222211222233 2233444
Q ss_pred ccccc-------cccccccccceEEEEecccccCCceeeecChhhhc---CCHHHHHHH---HHHHHHHHHhhhhhhhc
Q 007128 282 AHCSR-------CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA---QDEEDLRIW---KEMSALVERMCWRIAAK 347 (617)
Q Consensus 282 V~~s~-------~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~---~~~~~~~~w---~~l~~l~~~~gf~~v~~ 347 (617)
+...+ -.+| ......+..++++.|||||.+++.+....+ ........+ ..+.+..+..||++..+
T Consensus 126 ~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 126 VPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 43321 1122 222345788899999999999986433221 111000001 45667778889876543
No 454
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=0.1 Score=51.70 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=27.8
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
.-||.||+-. ....+.+||--.|+|||.++|---++
T Consensus 161 a~YDaIhvGA----------aa~~~pq~l~dqL~~gGrllip~~~~ 196 (237)
T KOG1661|consen 161 APYDAIHVGA----------AASELPQELLDQLKPGGRLLIPVGQD 196 (237)
T ss_pred CCcceEEEcc----------CccccHHHHHHhhccCCeEEEeeccc
Confidence 8899999832 34567778888999999998876554
No 455
>PRK13699 putative methylase; Provisional
Probab=82.34 E-value=1.7 Score=43.99 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=38.1
Q ss_pred ccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCC-----CCCCCCeEEEEEEec
Q 007128 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSD-----SDKDGDEVVFIVQKK 605 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~l~~~K~ 605 (617)
+.++.|+.|||||||.+++--.......+..+++..+|.....++=+|.. -.....|.+++..|.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 46889999999999999864333223445555566555432122211111 112445888888875
No 456
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=82.31 E-value=0.12 Score=57.88 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=54.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE---EEeec-ccccchhhhhh---hc-ccCCcchhhhh----hh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK---LIYDR-GLIGSIHNWCE---AY-STYPRTYDLLH----AW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~---~~~~r-gl~~~~~~~~e---~~-~~~p~tfDlvh----~~ 527 (617)
.||||.||+||=+..|++.----..|+.+|. ++.++ ...+| |+ .+++-.+. .+ ..+|.+||.|. |+
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 6999999999988888764100013555553 22222 22233 43 22111111 12 23457899997 54
Q ss_pred hh--hhhhhhcCCCc------------ccchhhccccccCcceEEEecC
Q 007128 528 TV--FSDIEKRGCSG------------EDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~--~~~~~~~~c~~------------~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. |.+-+...-.+ ..+|....+.|||||++|.+.=
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 32 22111000000 2678888899999999987643
No 457
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=81.79 E-value=0.089 Score=52.24 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=44.9
Q ss_pred cCccchhhHHHhhhcchhhHhhhcC--CceEEEEeecCCC-C---CceE-EEeeccc---ccchhhhhhhcccCCcchhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-P---NTLK-LIYDRGL---IGSIHNWCEAYSTYPRTYDL 523 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~---~~l~-~~~~rgl---~~~~~~~~e~~~~~p~tfDl 523 (617)
+..+. .|+||-||.|.|+-.+++ ++.. |.++|. | ..|. -+...++ +-.++.=+..+.. ...||-
T Consensus 99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE
T ss_pred CCcce--EEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 44443 699999999999999987 5553 334342 2 1221 1111122 2222221222222 477886
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
|.+..-- .-...|.+..+++|+||.+-
T Consensus 173 vim~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred EEECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 6552211 12357777889999999864
No 458
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=81.35 E-value=0.16 Score=45.32 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=34.8
Q ss_pred hhhhhhhhhhh--hhhhcCCCcccchhhccccccCcceEEEecChh--------HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~--~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------~~~~~~~~~~~~~w~~ 580 (617)
||+|-|-+|-. |+......+..++.-|.+.|||||.||+--.+- ..+++.+-.+++.+..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 78777765554 443333456788999999999999999965542 2344555555555543
No 459
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=80.42 E-value=0.47 Score=50.53 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
..+...+|+|+|.|..+..+..+ .+...|.+. +--++.+-.-+ .|+-|--+..|-+-| .=|+|..--+++|..
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdl---p~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL---PFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHhCCCCceeecCH---HHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCC
Confidence 35777999999999999888764 233233322 22222221111 333444445555544 335888888888876
Q ss_pred hcCCCcccchhhccccccCcceEEEecCh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+. +...+|+-...-|+|||.+|+-|..
T Consensus 251 De--dcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 251 DE--DCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred hH--HHHHHHHHHHHhCCCCCEEEEEecc
Confidence 55 4578999999999999999999883
No 460
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=80.30 E-value=0.58 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEeecccccccccccccc----hhhhhcc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSL 242 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDi 242 (617)
.+.|||||.|.+...|+.. -++|++|
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 5899999999999998875 2666655
No 461
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=80.09 E-value=0.83 Score=51.03 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=65.7
Q ss_pred eeEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
...|+-+|+|-|-+.....+. .+++++=.|+.+..-+...-..-.-.+++...|...++-|..+.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 567889999999766554432 366777777655443322222223457778888888886668999998632
Q ss_pred ccccccccc--ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQRD--GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~~--~~~L~el~RvLrPGG~lvis~ 316 (617)
+=-+.++. ...|.-+-+.|||.|+.+=+.
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 11222221 358999999999998877543
No 462
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=79.14 E-value=0.57 Score=50.98 Aligned_cols=109 Identities=18% Similarity=0.307 Sum_probs=64.8
Q ss_pred CCCceeEEEeeccccccccccccc----ch-hhhhccCCCccchhhhHHHHHhCCCc-ccccccccccC---CCCCcccc
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLS----SD-VITMSLAPNDVHQNQIQFALERGIPA-YLGVLGTKRLP---YPSRSFEL 281 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~----~~-V~gvDis~~dl~~a~~~~a~~rg~~~-~~~~~d~~~lp---f~~~sFDl 281 (617)
.+.++.+|||+.+-+|.=+.+++. .+ |++.|....-+..-. +.+.+-|++. .....|...+| |+. +||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 445668999999999965555443 23 566665553333222 3444556653 33445555554 444 8998
Q ss_pred cc----cccccc-------------------ccccccceEEEEecccccCCceeeecChhhhcCC
Q 007128 282 AH----CSRCRI-------------------DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD 323 (617)
Q Consensus 282 V~----~s~~l~-------------------h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~ 323 (617)
|. |+..-+ +|.+ .++|..+..++++||+|+.|+-......
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ--r~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ--RELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHH--HHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 86 332101 1111 2477778889999999999876554433
No 463
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=79.08 E-value=0.94 Score=45.25 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=55.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCCce---EEEEeecCCCCCceEEEeecc------cccchhhhhhhcccCC-cchhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDV---WVMSVVPEDGPNTLKLIYDRG------LIGSIHNWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~---~v~~v~~~~~~~~l~~~~~rg------l~~~~~~~~e~~~~~p-~tfDlvh~ 526 (617)
++-+.||.||=|.|..+..+.+++. |+ |.+-+ .-++..++-| +|..-..|...+++.| ..||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp--~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHP--DVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEE--EecCH--HHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 4456799999999999999987643 22 22211 1211111111 2334445655566666 66776652
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+..-.+-+ ++-..-.-+-|+|||||.+-+..-.+
T Consensus 176 DTy~e~yE----dl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 176 DTYSELYE----DLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred echhhHHH----HHHHHHHHHhhhcCCCceEEEecCcc
Confidence 21111111 22233334559999999998776654
No 464
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=78.33 E-value=0.87 Score=42.33 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=31.8
Q ss_pred HHHHHHHhhccccCc----cchhhHHHhhhcchhhHhhhcC-----C-ceEEEEeecCCC
Q 007128 442 RVDSYWNLLSPKIQS----NSLRNLMDMKAHLGSFAAALKE-----K-DVWVMSVVPEDG 491 (617)
Q Consensus 442 ~V~~y~~~l~~~i~~----~~~r~vLD~g~G~G~fa~~L~~-----~-~~~v~~v~~~~~ 491 (617)
.|..+.+.+...+.. .....|+|+|||-|-++..|+. . +. .|+.+|.
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~---~v~~iD~ 61 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNL---RVLGIDC 61 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCC---eEEEEEC
Confidence 344445555443333 5677899999999999999988 3 45 5556664
No 465
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=78.25 E-value=0.2 Score=51.36 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=56.8
Q ss_pred cchhhHHHhhhcchhhHhhhcCCc-eEEEEeecCCC-CCceEEEeec-cc---------ccchh-hhhhhcccCCc-chh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKD-VWVMSVVPEDG-PNTLKLIYDR-GL---------IGSIH-NWCEAYSTYPR-TYD 522 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~-~~v~~v~~~~~-~~~l~~~~~r-gl---------~~~~~-~~~e~~~~~p~-tfD 522 (617)
.+.++||=+|-|.|+.+..|.+.+ +. +|+.++. +..++++.+- +. +-.++ |-..-+...++ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 367889999999999999999875 32 3444443 3444443221 00 00111 11111234555 999
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|..+..-+.......--...+..+.|.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 997533222110000011367888999999999999864
No 466
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=0.66 Score=44.36 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=65.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-C---CceEEEeecc----c----ccchhhhhhhcccCC-cchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-P---NTLKLIYDRG----L----IGSIHNWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~---~~l~~~~~rg----l----~~~~~~~~e~~~~~p-~tfDlvh~ 526 (617)
|.||.+|.|+=++|.-|....+.+-.|--.|+ . ..++-+.-+. + +--.|.| .+.+.-- +|||.|.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEEe
Confidence 66999999999999988765333333333343 1 2222222222 2 1112222 2222222 79999986
Q ss_pred hh-hh-hhhhhcCCCcccchhhccccccCcceEEEecChh--HHHHHHHhhhhccccc
Q 007128 527 WT-VF-SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--VVDFVKKYLRALNWEA 580 (617)
Q Consensus 527 ~~-~~-~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--~~~~~~~~~~~~~w~~ 580 (617)
.. +| +.. -++++.-+.+.|||.|..++..|-- .+++-.+.+...++.+
T Consensus 110 ADClFfdE~------h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 110 ADCLFFDEH------HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred ccchhHHHH------HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 43 22 312 1457777889999999999888753 4555555555555443
No 467
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.98 E-value=0.51 Score=50.17 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHHhhhcchhhHhhhcCCceEE--EEeecCCCCCceE-EE--eecccccchhhhh-----hhcccCC--cchhhhhhhhh
Q 007128 462 LMDMKAHLGSFAAALKEKDVWV--MSVVPEDGPNTLK-LI--YDRGLIGSIHNWC-----EAYSTYP--RTYDLLHAWTV 529 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~~~v--~~v~~~~~~~~l~-~~--~~rgl~~~~~~~~-----e~~~~~p--~tfDlvh~~~~ 529 (617)
|||+|+|+|+-+-++ .++|- -+++-+.....|. ++ .++.....-.+|. ++...+| ..|+++.+.+-
T Consensus 117 iLDvG~GPgtgl~A~--n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 117 ILDVGAGPGTGLWAL--NDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred hhccCCCCchhhhhh--cccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 999999999665444 33441 1111121111110 00 1111122223343 2233454 78888765433
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+-+.. ..-.+.+.+.-+=-++.|||.++|.++-
T Consensus 195 Ll~d~-~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 195 LLPDG-NEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hcccc-CcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 33221 1111223444556789999999998874
No 468
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=77.38 E-value=0.26 Score=53.86 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=50.5
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.|||++||+|.++..++.. ++ -.|+.+|. ++.++.+.+. |+ +-.++ |..+-++. ...||+|..+- |.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~G 135 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-FG 135 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-CC
Confidence 5999999999999998753 42 23455553 3333333221 22 11111 11111221 35699998742 11
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
....+|...-+.++|||.+.++-+
T Consensus 136 -------s~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 136 -------SPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -------CcHHHHHHHHHHhcCCCEEEEEec
Confidence 123445553567899999999844
No 469
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=76.28 E-value=0.28 Score=47.05 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=58.3
Q ss_pred hhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCC-cch
Q 007128 449 LLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYP-RTY 521 (617)
Q Consensus 449 ~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p-~tf 521 (617)
.|...|++..=.+||.+|.|+|-|+.++.++++---++..++- ++....-.++ .+ -|..-+....+..++ .-|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 3344566666668999999999999999999874334443331 1111100000 01 122222111122233 566
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|.|.|..=+-.+..+ .-..+|.+..--|++||-++--
T Consensus 119 D~viS~lPll~~P~~--~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 119 DSVISGLPLLNFPMH--RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeEEeccccccCcHH--HHHHHHHHHHHhcCCCCeEEEE
Confidence 666653322212211 1135777788889999988643
No 470
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=74.97 E-value=0.27 Score=51.25 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=63.5
Q ss_pred cchhhHHHhhhcchhhHhhhc-CCceEEEEeecCC-C----CCceEEEeecccccc--hh-hhhhhcccCC---cchhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALK-EKDVWVMSVVPED-G----PNTLKLIYDRGLIGS--IH-NWCEAYSTYP---RTYDLL 524 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~-~~~~~v~~v~~~~-~----~~~l~~~~~rgl~~~--~~-~~~e~~~~~p---~tfDlv 524 (617)
+.--+||||-||.|..--..+ +.+.-+.+|.-.| + +.--+.|.+|||-.+ ++ .-|-+..+|. -..+|+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 444469999999996544333 3222122444444 1 233356778888332 11 2122222232 556888
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
..+++|..+.++ --+...|.=+.++|.|||++|.+-.+
T Consensus 214 iVsGL~ElF~Dn-~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 214 IVSGLYELFPDN-DLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred EEecchhhCCcH-HHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 888888866522 12445788899999999999999854
No 471
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.84 E-value=0.62 Score=47.38 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=65.5
Q ss_pred eeEEEeeccccc-cccccccc--chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC---CCccccccccccc
Q 007128 215 LRTVLDVGCGVA-SFGAYLLS--SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP---SRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G-~~~~~L~~--~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~---~~sFDlV~~s~~l 288 (617)
+++||-||=.-- +++..|.. ..|+.+|++...++--. +.|.+.|+++.....|... |+| .++||++++.-
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE---TTS----TTTSS-BSEEEE----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCC--
Confidence 468999995443 33444422 36899999987766544 6788889888888777543 343 37999998642
Q ss_pred cccccc-cceEEEEecccccCCc---eeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhccCceEE
Q 007128 289 IDWLQR-DGILLLELDRLLRPGG---YFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVV 353 (617)
Q Consensus 289 ~h~~~~-~~~~L~el~RvLrPGG---~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~~~~~i 353 (617)
.+... ...++......||.-| +|.++. .+.....|.++++.+.++|+-+.+....+..
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~------~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGFTH------KEASPDKWLEVQRFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-T------TT--HHHHHHHHHHHHTS--EEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEEec------CcCcHHHHHHHHHHHHHCCcCHHHHHhhhcc
Confidence 12111 1235566666776555 333332 2223456889999999999966554444333
No 472
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.68 E-value=0.95 Score=44.14 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=61.6
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEE--eecCCCCCceEEEeeccc--ccchhhhhhhcccCCcchhhhh------
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMS--VVPEDGPNTLKLIYDRGL--IGSIHNWCEAYSTYPRTYDLLH------ 525 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~--v~~~~~~~~l~~~~~rgl--~~~~~~~~e~~~~~p~tfDlvh------ 525 (617)
...+|++|||+|-..+.|++. ++..|. +-|.....|++-|.-.+. ..+..|....+.. ++.|++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN--ESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc--CCccEEEECCCcC
Confidence 445999999999999999875 222221 222111234433333322 1122222222221 4444432
Q ss_pred --------hhh-hhhhh--hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhccccc
Q 007128 526 --------AWT-VFSDI--EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEA 580 (617)
Q Consensus 526 --------~~~-~~~~~--~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~ 580 (617)
... .+... ...+.-+..+|.-++-||-|-|.+++---.+ ...+|-++++.-+|..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGV 188 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccce
Confidence 111 11111 1111123356667778889999987654332 4456666888888887
No 473
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=72.57 E-value=0.51 Score=49.17 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=53.1
Q ss_pred ceeEEEeecccccccccccc-cc-----hhhhhccCCCccchhhhHHHH-H--hCCCcccccccccccCCCCCccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLL-SS-----DVITMSLAPNDVHQNQIQFAL-E--RGIPAYLGVLGTKRLPYPSRSFELAHC 284 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~-~~-----~V~gvDis~~dl~~a~~~~a~-~--rg~~~~~~~~d~~~lpf~~~sFDlV~~ 284 (617)
..++|+=||||+=-++.-+. +. .|+++|+++..++.++ +... . -+-...|..+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 35699999999765444333 22 3678888887666665 2222 1 133456777777766655568999986
Q ss_pred ccccccccc-ccceEEEEecccccCCceeeec
Q 007128 285 SRCRIDWLQ-RDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 285 s~~l~h~~~-~~~~~L~el~RvLrPGG~lvis 315 (617)
+.. ..... +-..+|..+.+.++||..+++.
T Consensus 199 Aal-Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AAL-VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhh-cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 532 22222 2246999999999999999986
No 474
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=72.17 E-value=1.3 Score=39.43 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=22.7
Q ss_pred eeEEEeecccccccccccccchhhhhccC
Q 007128 215 LRTVLDVGCGVASFGAYLLSSDVITMSLA 243 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~V~gvDis 243 (617)
....+|||||+|.+..-|...+..|..++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccc
Confidence 34699999999999888887776665553
No 475
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=71.69 E-value=0.26 Score=46.05 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=52.9
Q ss_pred hhhhccCCCccchhhhHHHHHhCC-CcccccccccccC-C-CCCcccccccccccccccccc--------ceEEEEeccc
Q 007128 237 VITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQRD--------GILLLELDRL 305 (617)
Q Consensus 237 V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp-f-~~~sFDlV~~s~~l~h~~~~~--------~~~L~el~Rv 305 (617)
|+++||-+..+...+.+....... ++.+...+=+.+. + +++.+|+|+.+...++-.+.. -.+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 667888776666666444433221 2445444333333 2 225899998876654432221 1378889999
Q ss_pred ccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 306 LRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 306 LrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
|+|||.+.++..+. .+...+..+.+.+.++.
T Consensus 82 L~~gG~i~iv~Y~G---H~gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 82 LKPGGIITIVVYPG---HPGGKEESEAVEEFLAS 112 (140)
T ss_dssp EEEEEEEEEEE--S---TCHHHHHHHHHHHHHHT
T ss_pred hccCCEEEEEEeCC---CCCCHHHHHHHHHHHHh
Confidence 99999999975433 22222233455555554
No 476
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=71.59 E-value=2.6 Score=38.64 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=49.9
Q ss_pred hcccCCcchhhhhhhhhhhhhhhcCCCcc----cchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCC
Q 007128 513 AYSTYPRTYDLLHAWTVFSDIEKRGCSGE----DLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADAS 588 (617)
Q Consensus 513 ~~~~~p~tfDlvh~~~~~~~~~~~~c~~~----~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 588 (617)
.++..+..||+|.-+. |+ +..+++ +++.+|.|+++|||.+.--... ..|+.-+...++++ ....
T Consensus 43 ~l~~l~~~~Da~ylDg-Fs----P~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---~~Vr~~L~~aGF~v--~~~~-- 110 (124)
T PF05430_consen 43 MLPQLDARFDAWYLDG-FS----PAKNPELWSEELFKKLARLSKPGGTLATYSSA---GAVRRALQQAGFEV--EKVP-- 110 (124)
T ss_dssp HHHHB-T-EEEEEE-S-S-----TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B---HHHHHHHHHCTEEE--EEEE--
T ss_pred HHHhCcccCCEEEecC-CC----CcCCcccCCHHHHHHHHHHhCCCcEEEEeech---HHHHHHHHHcCCEE--EEcC--
Confidence 3444457888887543 44 334443 8999999999999988764443 35889999999998 3332
Q ss_pred CCCCCCCCeEEEEEEec
Q 007128 589 SDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 589 ~~~~~~~~~~~l~~~K~ 605 (617)
+...+...|++.|+
T Consensus 111 ---g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 111 ---GFGRKREMLRAVKP 124 (124)
T ss_dssp ----STTSSEEEEEEC-
T ss_pred ---CCCCcchheEEEcC
Confidence 23456677888774
No 477
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=70.79 E-value=1 Score=48.31 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=56.8
Q ss_pred CceeEEEeeccc-ccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 213 GRLRTVLDVGCG-VASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 213 ~~~~~VLDVGCG-~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+++.+|+=+|+| .|.++..+++. .|+++|.++. ..+.|++-|-+..+...|.....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence 345788888876 44677666653 6888877663 4456666655433332122222211234999974321
Q ss_pred cccccccceEEEEecccccCCceeeecChh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
...+....+.||+||.+++...+
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 24677788999999999998655
No 478
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=69.21 E-value=0.26 Score=51.84 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=29.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR 501 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r 501 (617)
.++|++||.||.+.++++..---..|..+|. +.+++.+.++
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 5999999999999999986311125777775 6776666544
No 479
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=66.24 E-value=1.2 Score=46.28 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=25.8
Q ss_pred ccccccccccccccccccceEEEEecccccCCceeeecChhhhc
Q 007128 278 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA 321 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~ 321 (617)
.||+|.++...+........++.....++++.|.+++.....|.
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yF 239 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYF 239 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhcc
Confidence 68888877664332222111245666777888888876544443
No 480
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.95 E-value=2.1 Score=41.97 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=35.0
Q ss_pred cccchhhccccccCcceEEEecChhHH-----HHHHHhhh------hcccccccccccCCCCCCCCCCeEEEEEEeccc
Q 007128 540 GEDLLLEMDRILRPTGFVIIRDKQSVV-----DFVKKYLR------ALNWEAVATTADASSDSDKDGDEVVFIVQKKIW 607 (617)
Q Consensus 540 ~~~~l~Em~RiLrPgG~~ii~~~~~~~-----~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~~w 607 (617)
+...+.|+.|+|||||.++|--..... ..+.+.+. -+-|..-...-...........|.||++.|.--
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~il~~~K~~~ 113 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKRFSNSHEYILVFSKDKK 113 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS-B--EEEEEEEESSTT
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEecCccccccccccccchhhhhccccccc
Confidence 457999999999999999876443322 22222222 223332000000001133456799999999543
No 481
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=65.94 E-value=3.7 Score=42.08 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=41.5
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
..+|+|||||.=-++...... .++|.||+...++.-. .+...-+++..+...|...-+ +....|+.+..-.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 579999999988777655433 4778888775544333 233344566666666655443 3457888875543
No 482
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=65.58 E-value=1.4 Score=42.51 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=66.2
Q ss_pred ecccccccccccccc-----hhhhhccCCCccc-------hhhhHHHHHhCCCcccccccccccC----CCCCccccccc
Q 007128 221 VGCGVASFGAYLLSS-----DVITMSLAPNDVH-------QNQIQFALERGIPAYLGVLGTKRLP----YPSRSFELAHC 284 (617)
Q Consensus 221 VGCG~G~~~~~L~~~-----~V~gvDis~~dl~-------~a~~~~a~~rg~~~~~~~~d~~~lp----f~~~sFDlV~~ 284 (617)
||=|.=+|+..|++. ++++..+...+.- ...++.-++.|+.+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 455555677777654 3444444332210 01122223456555544 3665554 35688999986
Q ss_pred cccccccc-----cc---------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 285 SRCRIDWL-----QR---------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 285 s~~l~h~~-----~~---------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
++- |.- .. ...+++.+.++|+++|.+.++.....++.. | .++.+++..|+.+.
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~-----W-~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDS-----W-NIEELAAEAGLVLV 148 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcc-----c-cHHHHHHhcCCEEE
Confidence 642 222 00 023778899999999999998655544332 3 34577888887554
No 483
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=63.83 E-value=0.45 Score=46.31 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=57.9
Q ss_pred hhHHHhhhcchhhHh--hhcCCceE------EEEeecCCC-CCceEEEeec----ccccchhhhh---hhcccCCcchhh
Q 007128 460 RNLMDMKAHLGSFAA--ALKEKDVW------VMSVVPEDG-PNTLKLIYDR----GLIGSIHNWC---EAYSTYPRTYDL 523 (617)
Q Consensus 460 r~vLD~g~G~G~fa~--~L~~~~~~------v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~---e~~~~~p~tfDl 523 (617)
..|||-=||+|+|.. ++...++. -..+...|. +++++.+.+. |+-..++.-. ..++..+.++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 359999999999973 33322221 001334453 3454433332 3222222111 223322389999
Q ss_pred hhhhhhhhhh-h---hcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 524 LHAWTVFSDI-E---KRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 524 vh~~~~~~~~-~---~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
|.++-=|-.- . ...--...++.|+.|+|+|...+++.+..+. .+.+....|+.
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~ 166 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRK 166 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhce
Confidence 9864332200 0 0000124689999999999767777776644 33444446665
No 484
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=63.41 E-value=1.1 Score=42.75 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCccccccccccccccc-----cc--c---ceEEEEecccccCCceeeecChhhh
Q 007128 276 SRSFELAHCSRCRIDWL-----QR--D---GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~-----~~--~---~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
.++||.+.|..++.|.- ++ + .+.+.++.++|||||.|+++.|-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36899998876655531 11 1 2478889999999999999876653
No 485
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=63.09 E-value=0.69 Score=50.38 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=54.1
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
+|||+-||+|.++..++.. ++ -.|+.+|. +..++.+.+. ++ +-.++ |...-+..-...||+|..+- |
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 5999999999999999876 43 24555553 3333322221 11 11121 11111111125689988754 3
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. .....+...-+.+++||.+.++-+
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEEec
Confidence 2 234577777789999999999843
No 486
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.14 E-value=6.1 Score=41.51 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=46.2
Q ss_pred CCccccccccccccccccccceEEEEecccccCCceeeecCh-hhhcCCHHHHHHH-HHHHHHHHHhhhhhhh
Q 007128 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP-EAYAQDEEDLRIW-KEMSALVERMCWRIAA 346 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p-~~~~~~~~~~~~w-~~l~~l~~~~gf~~v~ 346 (617)
.+-||+|+.+....|...+ ++.++++|+|.|++-+. ..-....+....| +.+.++++.+||+...
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 3679999987766666554 28889999999999753 2223333434444 7899999999997643
No 487
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=59.78 E-value=3.7 Score=44.27 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=63.6
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhC--CCcc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERG--IPAY 263 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg--~~~~ 263 (617)
|......+++-..-.+ .++.+|||+.+.+|+=+..|++. .|++=|+++.-++. +.....+- ....
T Consensus 138 ~rqeavSmlPvL~L~v---~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~--L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGV---KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNM--LVHQLKRLPSPNLL 212 (375)
T ss_pred hhhhhhhccchhhccc---CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHH--HHHHHhccCCccee
Confidence 3344455554322112 33479999999999888777664 23333444322221 11222221 1122
Q ss_pred cccccccccC---------CCCCcccccccc-----ccccc---------ccccc--------ceEEEEecccccCCcee
Q 007128 264 LGVLGTKRLP---------YPSRSFELAHCS-----RCRID---------WLQRD--------GILLLELDRLLRPGGYF 312 (617)
Q Consensus 264 ~~~~d~~~lp---------f~~~sFDlV~~s-----~~l~h---------~~~~~--------~~~L~el~RvLrPGG~l 312 (617)
+...++...| .....||-|.|- .+.+. |.... -.+|..-.++||+||.+
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 2222222222 233468988762 11110 11110 13666778899999999
Q ss_pred eecChhhhcCCH
Q 007128 313 AYSSPEAYAQDE 324 (617)
Q Consensus 313 vis~p~~~~~~~ 324 (617)
+.|+=..++...
T Consensus 293 VYSTCSLnpieN 304 (375)
T KOG2198|consen 293 VYSTCSLNPIEN 304 (375)
T ss_pred EEeccCCCchhh
Confidence 999765554443
No 488
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=59.28 E-value=3 Score=44.57 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=22.6
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCC
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPED 490 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~ 490 (617)
.+.-.+|||+|||+|.++..|+.+ ..| .++.+|
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atD 145 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSD 145 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEe
Confidence 344457999999999998888654 223 455555
No 489
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=59.23 E-value=3.9 Score=40.66 Aligned_cols=133 Identities=18% Similarity=0.278 Sum_probs=76.1
Q ss_pred hHHHhhhcchhhHhhhcCC---c-eEEEEeecCCCCCceEEEeec-ccccchhhhhhhcccCCcchhhh--hhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---D-VWVMSVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYPRTYDLL--HAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~-~~v~~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p~tfDlv--h~~~~~~~~ 533 (617)
.||=+||-+|+-.....+- | +...-+.|--..+.|.++.+| .+++.+-|-. +|.+|-.+ |.+-+|+++
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~-----~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDAR-----KPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccC-----CcHHhhhhcccccEEEEec
Confidence 4999999999888777652 3 222333343334666677776 4566666532 44444433 244445555
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC----------hhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK----------QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
.++ -..+-+...++.-||+||+++|.-. ..+..+-.+.+..=+++.+ ...+ .+|+. +.-++|.-
T Consensus 154 AQp-~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~-e~~~--LePye--~DH~~i~~ 227 (231)
T COG1889 154 AQP-NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEIL-EVVD--LEPYE--KDHALIVA 227 (231)
T ss_pred CCc-hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceee-EEec--cCCcc--cceEEEEE
Confidence 422 2334566778999999998776533 2244433334445567776 5666 77754 44444443
Q ss_pred e
Q 007128 604 K 604 (617)
Q Consensus 604 K 604 (617)
|
T Consensus 228 ~ 228 (231)
T COG1889 228 K 228 (231)
T ss_pred e
Confidence 3
No 490
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.51 E-value=0.76 Score=46.33 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=51.5
Q ss_pred cCccchhhHHHhhhcch--hhHhhhc-CCceEEEEeecCCC-----CCceEEEeeccc---ccchhhh-hh----hcccC
Q 007128 454 IQSNSLRNLMDMKAHLG--SFAAALK-EKDVWVMSVVPEDG-----PNTLKLIYDRGL---IGSIHNW-CE----AYSTY 517 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G--~fa~~L~-~~~~~v~~v~~~~~-----~~~l~~~~~rgl---~~~~~~~-~e----~~~~~ 517 (617)
|+.-+-+++||+|.-+| .++.||+ ..+.- |+.+|. .-..++..-.|+ |...+.- ++ -+..+
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGr---v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGR---VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCce---EEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC
Confidence 44444567999996555 5555554 22332 233331 112222223343 3333321 22 24455
Q ss_pred C-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 518 P-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 518 p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+ +|||+++.+. .+. +-.....+.=|+|||||.+++..
T Consensus 146 ~~~tfDfaFvDa-----dK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVDA-----DKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEcc-----chH--HHHHHHHHHHhhcccccEEEEec
Confidence 4 9999987421 111 11245666679999999998876
No 491
>PRK11524 putative methyltransferase; Provisional
Probab=57.55 E-value=13 Score=38.77 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred cccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCCCC-------CCCCeEEEEEEec
Q 007128 540 GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSD-------KDGDEVVFIVQKK 605 (617)
Q Consensus 540 ~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~~~K~ 605 (617)
+...|.|+.|+|||||.++|-.....+..+..+++.. |.....++=++..++ ....|.+|+..|.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~~~~~-f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~ 130 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLYCRKL-FTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKD 130 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHHHhcC-cceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcC
No 492
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=56.85 E-value=1.1 Score=44.77 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=45.3
Q ss_pred eEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----C----CCCcc
Q 007128 216 RTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----Y----PSRSF 279 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----f----~~~sF 279 (617)
+.|+++|.-.|..+..+++ ..|+++|+..........+. ......+.+.++|..+.. . ....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 5899999888755544432 36999999654433322211 001123556666543321 0 11123
Q ss_pred ccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 280 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+|+ -.+ .|...+....|+....++++|+|+++-+...
T Consensus 113 vlVi-lDs-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 113 VLVI-LDS-SHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp EEEE-ESS-----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred eEEE-ECC-CccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 3443 222 3333333445666889999999999976443
No 493
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=56.83 E-value=0.65 Score=41.52 Aligned_cols=39 Identities=21% Similarity=0.525 Sum_probs=26.6
Q ss_pred ccccccccccc----cccccc-cceEEEEecccccCCceeeecC
Q 007128 278 SFELAHCSRCR----IDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 278 sFDlV~~s~~l----~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
.||+|.|..+. ++|-++ ...+++.+++.|+|||+|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999886542 222222 2358999999999999999963
No 494
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.10 E-value=7.7 Score=36.70 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccccccccc
Q 007128 195 IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGT 269 (617)
Q Consensus 195 ~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~ 269 (617)
.+++.+.|.+. .+.+..+.+|+|.|.|.+....++. ..+|+++.+..+.-++.. +.+.+. ...|..-|.
T Consensus 58 teQv~nVLSll-----~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~-a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 58 TEQVENVLSLL-----RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH-AWRAGCAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHHHc-----cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH-HHHHhcccchhhhhhhh
Confidence 35566666541 2223357999999999887776654 467888888766655533 222332 355665566
Q ss_pred cccCCCCCcccccc
Q 007128 270 KRLPYPSRSFELAH 283 (617)
Q Consensus 270 ~~lpf~~~sFDlV~ 283 (617)
....+.+-.+=+|+
T Consensus 132 wK~dl~dy~~vviF 145 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIF 145 (199)
T ss_pred hhccccccceEEEe
Confidence 55555544444443
No 495
>KOG2730 consensus Methylase [General function prediction only]
Probab=55.54 E-value=1.4 Score=44.23 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=56.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC--ccccccccccc----CCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRL----PYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~l----pf~~~sFDlV~~s~~ 287 (617)
..|+|.-||.|..+...+.+ .|+++|++|.-+.-|+ ..+.--|++ +.|.++|..++ .+....+|+|..+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s-- 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS-- 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC--
Confidence 57999999999887777665 4889999997665554 344444665 67778876543 3333334565543
Q ss_pred ccccccc--cceEEEEecccccCCceee
Q 007128 288 RIDWLQR--DGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 288 l~h~~~~--~~~~L~el~RvLrPGG~lv 313 (617)
-.|..+ ...-+-.+...+.|.|.-+
T Consensus 173 -ppwggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 173 -PPWGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred -CCCCCcchhhhhhhhhhhhcchhHHHH
Confidence 233222 1224444555566654433
No 496
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=55.27 E-value=4.5 Score=39.67 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED 490 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~ 490 (617)
+|||++||+|.++..++.++.- .|+.+|
T Consensus 52 ~vLDLfaGsG~lglea~srga~--~v~~vE 79 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK--VAFLEE 79 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC--EEEEEe
Confidence 5999999999999999998762 345555
No 497
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=54.18 E-value=17 Score=38.75 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=51.5
Q ss_pred hHHHhhhcchhhHhhhcC----CceEEEEeecCCC-CCceEEEee------------cccccchhhhhhhccc--CCcch
Q 007128 461 NLMDMKAHLGSFAAALKE----KDVWVMSVVPEDG-PNTLKLIYD------------RGLIGSIHNWCEAYST--YPRTY 521 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~-~~~l~~~~~------------rgl~~~~~~~~e~~~~--~p~tf 521 (617)
.|+|+|||.|.=+..|.+ .+. ....+|+|. ..+|+.+.+ +|+.|.|.+--.-++. .+...
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 599999999976654432 211 125778884 344433222 2444544432111111 11223
Q ss_pred hhhh-hhhhhhhhhhcCCCcccchhhccc-cccCcceEEEecC
Q 007128 522 DLLH-AWTVFSDIEKRGCSGEDLLLEMDR-ILRPTGFVIIRDK 562 (617)
Q Consensus 522 Dlvh-~~~~~~~~~~~~c~~~~~l~Em~R-iLrPgG~~ii~~~ 562 (617)
.++. --+.|..+... .....|.+|.+ .|+|||.++|--.
T Consensus 158 r~~~flGSsiGNf~~~--ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 158 TTILWLGSSIGNFSRP--EAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred cEEEEeCccccCCCHH--HHHHHHHHHHHhhCCCCCEEEEecC
Confidence 3332 11222222111 22378899999 9999999999544
No 498
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=53.61 E-value=4.5 Score=37.00 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=21.3
Q ss_pred hHHHhhhcchhhHhhhcCCce--EEEEeecC
Q 007128 461 NLMDMKAHLGSFAAALKEKDV--WVMSVVPE 489 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~--~v~~v~~~ 489 (617)
.|||+|||.|.++..++..+- .+..+.|.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~ 31 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPL 31 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecC
Confidence 379999999999999987643 34455554
No 499
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.59 E-value=29 Score=34.27 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHhhhcchhhHhhhcCC--------ceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhh---------
Q 007128 462 LMDMKAHLGSFAAALKEK--------DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLL--------- 524 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~--------~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlv--------- 524 (617)
|||+||.+|+..---.++ ||-..++.|..+.+.++-. +=--...+....|.++. +-.|+|
T Consensus 73 VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~-dvtdp~~~~ki~e~lp~--r~VdvVlSDMapnaT 149 (232)
T KOG4589|consen 73 VLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGN-DVTDPETYRKIFEALPN--RPVDVVLSDMAPNAT 149 (232)
T ss_pred EEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCccccccc-ccCCHHHHHHHHHhCCC--CcccEEEeccCCCCc
Q ss_pred ------------hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCC
Q 007128 525 ------------HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 525 ------------h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
.|..+|. +-.+|.+ |+|.|+..--.- ...+++.-+.+.==++ +++-++.--
T Consensus 150 Gvr~~Dh~~~i~LC~s~l~-----------~al~~~~---p~g~fvcK~w~g~e~~~l~r~l~~~f~~V--k~vKP~Asr 213 (232)
T KOG4589|consen 150 GVRIRDHYRSIELCDSALL-----------FALTLLI---PNGSFVCKLWDGSEEALLQRRLQAVFTNV--KKVKPDASR 213 (232)
T ss_pred CcchhhHHHHHHHHHHHHH-----------HhhhhcC---CCcEEEEEEecCCchHHHHHHHHHHhhhc--EeeCCcccc
Q ss_pred CCCCCeEEEEEEe
Q 007128 592 DKDGDEVVFIVQK 604 (617)
Q Consensus 592 ~~~~~~~~l~~~K 604 (617)
. .+.|.+|+|++
T Consensus 214 ~-eS~E~y~v~~~ 225 (232)
T KOG4589|consen 214 D-ESAETYLVCLN 225 (232)
T ss_pred c-cccceeeeeee
No 500
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.47 E-value=1.7 Score=43.77 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred eEEEeecccccccccccccc-------------hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC--------
Q 007128 216 RTVLDVGCGVASFGAYLLSS-------------DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-------- 273 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-------------~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-------- 273 (617)
.+++|+.+.+|+|+..|.++ .|+++|+-+... ++ +.-.++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP------------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP------------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc------------cCceEEeecccCCHhHHHHHHHH
Q ss_pred CCCCccccccc-----cccccccccccce-----EEEEecccccCCceee
Q 007128 274 YPSRSFELAHC-----SRCRIDWLQRDGI-----LLLELDRLLRPGGYFA 313 (617)
Q Consensus 274 f~~~sFDlV~~-----s~~l~h~~~~~~~-----~L~el~RvLrPGG~lv 313 (617)
|..+..|+|+| .-.+|.+.+..+. +|.-...+|||||.|+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Done!