Your job contains 1 sequence.
>007130
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNK
SGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSS
IKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQ
SSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSP
KEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVA
GALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFL
DSPLFRHLGNNIYGGGREIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL
MQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADR
VVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNY
CLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQL
SHVGHWQTRFGRDAEEL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007130
(617 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2102102 - symbol:SS2 "starch synthase 2" speci... 1578 4.5e-162 1
TAIR|locus:2169749 - symbol:SS1 "starch synthase 1" speci... 480 8.7e-69 2
TAIR|locus:2037950 - symbol:GBSS1 "granule bound starch s... 405 1.1e-59 2
UNIPROTKB|Q42968 - symbol:WAXY "Granule-bound starch synt... 374 2.0e-54 2
TIGR_CMR|GSU_1023 - symbol:GSU_1023 "glycogen synthase" s... 379 5.0e-47 2
TIGR_CMR|BA_5120 - symbol:BA_5120 "glycogen synthase" spe... 390 6.3e-36 1
TIGR_CMR|GSU_3257 - symbol:GSU_3257 "glycogen synthase" s... 388 1.1e-35 1
UNIPROTKB|Q9KRB6 - symbol:glgA "Glycogen synthase" specie... 337 1.5e-28 1
TIGR_CMR|VC_1726 - symbol:VC_1726 "glycogen synthase" spe... 337 1.5e-28 1
UNIPROTKB|P0A6U8 - symbol:glgA species:83333 "Escherichia... 329 1.4e-27 1
TAIR|locus:2141936 - symbol:SS4 "starch synthase 4" speci... 235 9.6e-23 3
UNIPROTKB|Q4KCP0 - symbol:glgA "Glycogen synthase" specie... 229 7.0e-16 1
POMBASE|SPCC63.04 - symbol:mok14 "alpha-1,4-glucan syntha... 170 8.7e-09 1
TIGR_CMR|SO_1499 - symbol:SO_1499 "glycogen synthase" spe... 104 2.7e-07 2
UNIPROTKB|Q9XHN9 - symbol:Q9XHN9 "Granule bound starch sy... 120 1.8e-06 1
ASPGD|ASPL0000036014 - symbol:agsB species:162425 "Emeric... 149 3.1e-06 1
POMBASE|SPBC16D10.05 - symbol:mok13 "alpha-1,3-glucan syn... 134 0.00012 1
>TAIR|locus:2102102 [details] [associations]
symbol:SS2 "starch synthase 2" species:3702 "Arabidopsis
thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016757
"transferase activity, transferring glycosyl groups" evidence=ISS]
[GO:0009011 "starch synthase activity" evidence=IMP] [GO:0010021
"amylopectin biosynthetic process" evidence=IMP] [GO:0001666
"response to hypoxia" evidence=RCA] [GO:0010264 "myo-inositol
hexakisphosphate biosynthetic process" evidence=RCA] [GO:0019375
"galactolipid biosynthetic process" evidence=RCA] HAMAP:MF_00484
InterPro:IPR001296 InterPro:IPR011835 Pfam:PF00534
UniPathway:UPA00152 GO:GO:0009507 EMBL:CP002686
GenomeReviews:BA000014_GR CAZy:GT5 InterPro:IPR013534 Pfam:PF08323
EMBL:AC008261 GO:GO:0009501 eggNOG:COG0297 HOGENOM:HOG000294940
KO:K00703 GO:GO:0009011 TIGRFAMs:TIGR02095 GO:GO:0010021
GO:GO:0019252 EMBL:AY054467 EMBL:BT002555 IPI:IPI00531533
RefSeq:NP_186767.1 UniGene:At.18317 ProteinModelPortal:Q9MAC8
SMR:Q9MAC8 IntAct:Q9MAC8 STRING:Q9MAC8 PaxDb:Q9MAC8 PRIDE:Q9MAC8
EnsemblPlants:AT3G01180.1 GeneID:820294 KEGG:ath:AT3G01180
TAIR:At3g01180 InParanoid:Q9MAC8 OMA:ECAPFSK PhylomeDB:Q9MAC8
ProtClustDB:CLSN2684979 Genevestigator:Q9MAC8 Uniprot:Q9MAC8
Length = 792
Score = 1578 (560.5 bits), Expect = 4.5e-162, P = 4.5e-162
Identities = 307/456 (67%), Positives = 343/456 (75%)
Query: 164 PSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTW 223
P D +T N P SS D K S SPEK S + S + + W
Sbjct: 192 PQKPSDVAT-NGKP--WSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFW 248
Query: 224 SDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILV 283
SD LPS+L++ S+ K E++ + V SE EP +E KPPPLAGANVMNVILV
Sbjct: 249 SDPLPSYLTKAPQTSTMKTEKYVEKTPDVAS--SETNEPGKDEEKPPPLAGANVMNVILV 306
Query: 284 AAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDI 343
AAEC P+SKTGGLGDVAGALPK+LARRGHRVMVV P Y YAE +D G+RKRY+V QD+
Sbjct: 307 AAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDM 366
Query: 344 EVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR---------------EIPWYVPCGGV 388
EV YF A+IDGVDFVF+DSP FRHL NNIYGG R E+PWYVPCGGV
Sbjct: 367 EVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGV 426
Query: 389 CYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTD 448
CYGDGNL FIANDWHTALLPVYLKAYYRD+G+M+YTRS+LVIHNIAHQGRGPV DF Y D
Sbjct: 427 CYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVD 486
Query: 449 LPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEV 508
LP HYLD FKLYDPVGGEHFNIFAAGLK ADRV+TVS GYSWE+KT EGGWGLHNIINE
Sbjct: 487 LPSHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINEN 546
Query: 509 DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDV 568
DWK GIVNGIDT+EW+P +D +L SD YTNY L+ LH GKPQCKAALQ+E GLPVR DV
Sbjct: 547 DWKFRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDV 606
Query: 569 PVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
P+IGFIGRLDHQKGVDLIAEA+PWMM QDVQL +G
Sbjct: 607 PLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLG 642
Score = 191 (72.3 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 75/242 (30%), Positives = 111/242 (45%)
Query: 10 MVETKADSYVVLFS-KNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLK-V 67
M S+ +L K Q R +SS R + + S+S F RS GH K V
Sbjct: 1 MASVAESSFPLLCQIKTQRRINSS--TLRHSRVSYHDLPSGSLS-FRSRSFVLGHRCKCV 57
Query: 68 KHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIAN 127
V+A+G+ +D+ EPED+LQATI+KSKKVLAMQ+ LL QI+ERRKLVSSIK +
Sbjct: 58 SRVEASGS---DDD---EPEDALQATIDKSKKVLAMQRNLLHQIAERRKLVSSIKESTPD 111
Query: 128 XXXXXXXXXXXXXXXXXXXXXXXXXXXVVENQNGII-PSSSGDHSTANE------APKLQ 180
+ + NG + PS+ G S + E +P +
Sbjct: 112 LDDAKASSKQESASSVNANTDATKKEIMDGDANGSVSPSTYGKSSLSKEPEAKTFSPSTE 171
Query: 181 SSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSP 240
S + A S SP+K S D+ ++ G S + + ++V++SP
Sbjct: 172 SLKNRKQSSASVISSSPVTSPQKPS-DVATN----GKPWSSVVASSVDPPYKPSSVMTSP 226
Query: 241 KE 242
++
Sbjct: 227 EK 228
>TAIR|locus:2169749 [details] [associations]
symbol:SS1 "starch synthase 1" species:3702 "Arabidopsis
thaliana" [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009058
"biosynthetic process" evidence=IEA] [GO:0009250 "glucan
biosynthetic process" evidence=IEA] [GO:0016757 "transferase
activity, transferring glycosyl groups" evidence=ISS] [GO:0009011
"starch synthase activity" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0010021 "amylopectin biosynthetic process"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0001666
"response to hypoxia" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019375 "galactolipid
biosynthetic process" evidence=RCA] [GO:0043085 "positive
regulation of catalytic activity" evidence=RCA] InterPro:IPR001296
InterPro:IPR011835 Pfam:PF00534 UniPathway:UPA00152 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 EMBL:AB006701 CAZy:GT5
InterPro:IPR013534 Pfam:PF08323 GO:GO:0009501 eggNOG:COG0297
HOGENOM:HOG000294940 KO:K00703 GO:GO:0009011 TIGRFAMs:TIGR02095
OMA:ADVIMVP GO:GO:0010021 GO:GO:0019252 EMBL:AY128273 EMBL:AK226881
EMBL:AF121673 IPI:IPI00518916 RefSeq:NP_001190378.1
RefSeq:NP_197818.1 UniGene:At.22528 ProteinModelPortal:Q9FNF2
SMR:Q9FNF2 STRING:Q9FNF2 PaxDb:Q9FNF2 PRIDE:Q9FNF2
EnsemblPlants:AT5G24300.1 EnsemblPlants:AT5G24300.2 GeneID:832497
KEGG:ath:AT5G24300 TAIR:At5g24300 InParanoid:Q9FNF2
PhylomeDB:Q9FNF2 ProtClustDB:CLSN2686324 Genevestigator:Q9FNF2
GermOnline:AT5G24300 Uniprot:Q9FNF2
Length = 652
Score = 480 (174.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 97/241 (40%), Positives = 144/241 (59%)
Query: 378 EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQG 437
E P +P GG YG+ +L F+ NDWH L+P+ L A YR G+ + RS+L+IHN+AHQG
Sbjct: 266 EAPLVLPLGGFTYGEKSL-FLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQG 324
Query: 438 RGPVSDFVYTDLPGHYLDLFKLYDPVG--------GEHFNIFAAGLKTADRVVTVSRGYS 489
P + + LP + P GE N+ + T+DR++TVS+GY+
Sbjct: 325 VEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYA 384
Query: 490 WELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGK 549
WE+ T EGG+GL ++++ ++GI NGI+ EW+P D H+ +Y D + + K
Sbjct: 385 WEITTVEGGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPF----HYSADDV-SEK 439
Query: 550 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTR 609
+CK ALQ+E GLP+R + P+IGFIGRLD+QKG+DLI A P +M D+Q +G +
Sbjct: 440 IKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPK 499
Query: 610 F 610
+
Sbjct: 500 Y 500
Score = 236 (88.1 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 62/148 (41%), Positives = 81/148 (54%)
Query: 242 EERHEKDLDQVQQID-SEPIEPKTEEAKPP---PLAGANVMN-VILVAAECGPWSKTGGL 296
EE+ E +DQ+ D P EE P A V+N ++ V +E P+SKTGGL
Sbjct: 102 EEKKEA-IDQIVMADFGVPGNRAVEEGAAEVGIPSGKAEVVNNLVFVTSEAAPYSKTGGL 160
Query: 297 GDVAGALPKALARRGHRVMVVAPHY--G-----NYAEPQDTGIRKRYRVDRQDIEVAYFQ 349
GDV G+LP ALA RGHRVMV++P Y G NYA +D GIR EV+++
Sbjct: 161 GDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLGIRVTVNCFGGSQEVSFYH 220
Query: 350 AYIDGVDFVFLDSPLFRHLGNNIYGGGR 377
Y DGVD+VF+D + GN YG +
Sbjct: 221 EYRDGVDWVFVDHKSYHRPGNP-YGDSK 247
>TAIR|locus:2037950 [details] [associations]
symbol:GBSS1 "granule bound starch synthase 1"
species:3702 "Arabidopsis thaliana" [GO:0009011 "starch synthase
activity" evidence=IEA] [GO:0009058 "biosynthetic process"
evidence=IEA] [GO:0009250 "glucan biosynthetic process"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0016757 "transferase activity, transferring glycosyl groups"
evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001666 "response to hypoxia" evidence=RCA] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
[GO:0019375 "galactolipid biosynthetic process" evidence=RCA]
InterPro:IPR001296 InterPro:IPR011835 Pfam:PF00534
UniPathway:UPA00152 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009507 CAZy:GT5 InterPro:IPR013534 Pfam:PF08323
EMBL:AC006424 eggNOG:COG0297 HOGENOM:HOG000294940 GO:GO:0009011
TIGRFAMs:TIGR02095 GO:GO:0004373 GO:GO:0019252 EMBL:AY094405
EMBL:AY123983 EMBL:AY149948 EMBL:AY088544 IPI:IPI00520957
PIR:F86453 RefSeq:NP_174566.1 UniGene:At.11953
ProteinModelPortal:Q9MAQ0 SMR:Q9MAQ0 IntAct:Q9MAQ0 STRING:Q9MAQ0
PaxDb:Q9MAQ0 PRIDE:Q9MAQ0 EnsemblPlants:AT1G32900.1 GeneID:840184
KEGG:ath:AT1G32900 TAIR:At1g32900 InParanoid:Q9MAQ0 KO:K13679
OMA:ERYPQNI PhylomeDB:Q9MAQ0 ProtClustDB:CLSN2682839
Genevestigator:Q9MAQ0 GermOnline:AT1G32900 GO:GO:0009568
GO:GO:0033840 Uniprot:Q9MAQ0
Length = 610
Score = 405 (147.6 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 94/220 (42%), Positives = 128/220 (58%)
Query: 390 YGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDL 449
YG+ ++VF+ANDWHTALLP YLK+ Y+ G+ + + IHNIA+QGR D+ +L
Sbjct: 225 YGE-DVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNL 283
Query: 450 PGHYLDLFKLYD----PVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTA-EGGWGLHNI 504
P + F D PV G N A + A RV+TVS Y+ EL + + G LH
Sbjct: 284 PISFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKY 343
Query: 505 INEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPV 564
+ +SGI+NG+D +EW+P D ++ Y + T+ KP K ALQ GLPV
Sbjct: 344 LRMKT--VSGIINGMDVQEWNPSTDKYID----IKYDITTVTDAKPLIKEALQAAVGLPV 397
Query: 565 RDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
DVPVIGFIGRL+ QKG D++ EAI MG +VQ+ +G
Sbjct: 398 DRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILG 437
Score = 260 (96.6 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 64/155 (41%), Positives = 86/155 (55%)
Query: 249 LDQVQQ-IDSEPIEPKTEE-AKPPPLAGANV----MNVILVAAECGPWSKTGGLGDVAGA 302
+D +Q+ ++P+ K+ + + AG V M+VI + AE GPWSKTGGLGDV G
Sbjct: 49 VDNLQRRSQAKPVSAKSSKRSSKVKTAGKIVCEKGMSVIFIGAEVGPWSKTGGLGDVLGG 108
Query: 303 LPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDS 362
LP ALA RGHRVM + P Y Y + DT + + +V + V +F Y GVD VF+D
Sbjct: 109 LPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDH 168
Query: 363 PLFRHLGNNIYGGGREIPWYVPCGGVCYGDGNLVF 397
P+F L + G +I Y P GV Y D L F
Sbjct: 169 PIF--LAKVVGKTGSKI--YGPITGVDYNDNQLRF 199
>UNIPROTKB|Q42968 [details] [associations]
symbol:WAXY "Granule-bound starch synthase 1,
chloroplastic/amyloplastic" species:4538 "Oryza glaberrima"
[GO:0004373 "glycogen (starch) synthase activity" evidence=ISS]
[GO:0005982 "starch metabolic process" evidence=ISS] [GO:0009501
"amyloplast" evidence=ISS] InterPro:IPR001296 InterPro:IPR011835
Pfam:PF00534 UniPathway:UPA00152 GO:GO:0009507 CAZy:GT5
InterPro:IPR013534 Pfam:PF08323 GO:GO:0009501 GO:GO:0005982
GO:GO:0009011 TIGRFAMs:TIGR02095 GO:GO:0004373 GO:GO:0019252
GO:GO:0033840 EMBL:D10472 ProteinModelPortal:Q42968
EnsemblPlants:ORGLA06G0020500.1 Gramene:Q42968 Uniprot:Q42968
Length = 609
Score = 374 (136.7 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 92/226 (40%), Positives = 127/226 (56%)
Query: 390 YGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDL 449
YG+ ++VF+ NDWHT L YLK Y+ NG+ + + IHNI++QGR D+ +L
Sbjct: 224 YGE-DVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNL 282
Query: 450 PGHYLDLFKL---YD-PVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEG-GWGLHNI 504
+ F YD PV G N AG+ ADRV+TVS Y+ EL + G L NI
Sbjct: 283 SERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342
Query: 505 INEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPV 564
+ ++GIVNG+D EW P D ++T+ Y T K K ALQ E GLPV
Sbjct: 343 MRLTG--ITGIVNGMDVSEWDPSKDKYITA----KYDATTAIEAKALNKEALQAEAGLPV 396
Query: 565 RDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRF 610
+P+I FIGRL+ QKG D++A AIP +M +DVQ+ +G + +F
Sbjct: 397 DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 442
Score = 251 (93.4 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 59/126 (46%), Positives = 73/126 (57%)
Query: 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR 333
GA MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT +
Sbjct: 80 GAG-MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVV 138
Query: 334 KRYRV-DRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG-GREIPWYVPCGGVCYG 391
+V DR + V +F Y GVD VF+D P F ++G G +I Y P GV Y
Sbjct: 139 AEIKVADRYE-RVRFFHCYKRGVDRVFIDHPSFLE---KVWGKTGEKI--YGPDTGVDYK 192
Query: 392 DGNLVF 397
D + F
Sbjct: 193 DNQMRF 198
>TIGR_CMR|GSU_1023 [details] [associations]
symbol:GSU_1023 "glycogen synthase" species:243231
"Geobacter sulfurreducens PCA" [GO:0004373 "glycogen (starch)
synthase activity" evidence=ISS] [GO:0005978 "glycogen biosynthetic
process" evidence=ISS] HAMAP:MF_00484 InterPro:IPR001296
InterPro:IPR011835 Pfam:PF00534 UniPathway:UPA00164 GO:GO:0005978
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR013534
Pfam:PF08323 RefSeq:NP_952077.1 ProteinModelPortal:Q74ED9
GeneID:2685960 KEGG:gsu:GSU1023 PATRIC:22024816 eggNOG:COG0297
HOGENOM:HOG000294940 KO:K00703 OMA:IYFIDHE ProtClustDB:CLSK924464
BioCyc:GSUL243231:GH27-1018-MONOMER GO:GO:0009011
TIGRFAMs:TIGR02095 Uniprot:Q74ED9
Length = 501
Score = 379 (138.5 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 84/209 (40%), Positives = 118/209 (56%)
Query: 396 VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD 455
VF A+DWHTA +PV+L YRD+ L+ S+L +HN+ HQG + +
Sbjct: 139 VFHAHDWHTAAVPVFLNTLYRDDPLVGGAASVLTVHNMQHQGNFYPGAMEVLGIGWEHFT 198
Query: 456 LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGI 515
L N+ GL A + TVS GY+ E++T E GWGL ++ L GI
Sbjct: 199 FLGLEKD---NQTNLLKGGLYHATVLNTVSEGYAREMQTPEYGWGLDGVVRARSADLVGI 255
Query: 516 VNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIG 575
+NG+D +EW+P D H+ + NY L +GK CK +QR FGLP RDDVP+ G +G
Sbjct: 256 LNGVDYEEWNPETDPHIVA----NYSRSDL-SGKKLCKRDVQRFFGLPERDDVPLFGLVG 310
Query: 576 RLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
RL QKG+D++AEAI ++ DVQ+ +G
Sbjct: 311 RLVKQKGIDILAEAIHRILALDVQVVMLG 339
Score = 137 (53.3 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRK 334
+N+++ A+EC P++K GGL DV G LPK LA GH V VV P Y +P+ G+ +
Sbjct: 4 LNILMAASECVPFAKEGGLADVVGVLPKYLAHMGHDVRVVMPLYSRI-DPERFGLER 59
>TIGR_CMR|BA_5120 [details] [associations]
symbol:BA_5120 "glycogen synthase" species:198094 "Bacillus
anthracis str. Ames" [GO:0005978 "glycogen biosynthetic process"
evidence=ISS] [GO:0009011 "starch synthase activity" evidence=ISS]
HAMAP:MF_00484 InterPro:IPR001296 InterPro:IPR011835 Pfam:PF00534
UniPathway:UPA00164 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005978 CAZy:GT5 InterPro:IPR013534
Pfam:PF08323 eggNOG:COG0297 HOGENOM:HOG000294940 KO:K00703
GO:GO:0009011 TIGRFAMs:TIGR02095 RefSeq:NP_847306.1
RefSeq:YP_021773.2 RefSeq:YP_031002.1 ProteinModelPortal:Q81K85
IntAct:Q81K85 DNASU:1084436 EnsemblBacteria:EBBACT00000008312
EnsemblBacteria:EBBACT00000017669 EnsemblBacteria:EBBACT00000022941
GeneID:1084436 GeneID:2819822 GeneID:2849958 KEGG:ban:BA_5120
KEGG:bar:GBAA_5120 KEGG:bat:BAS4758 OMA:ADVIMVP
ProtClustDB:PRK00654 BioCyc:BANT260799:GJAJ-4812-MONOMER
BioCyc:BANT261594:GJ7F-4972-MONOMER Uniprot:Q81K85
Length = 476
Score = 390 (142.3 bits), Expect = 6.3e-36, P = 6.3e-36
Identities = 106/345 (30%), Positives = 179/345 (51%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTG--IRKR 335
MN++ +EC P+ K+GGL DVAGALPK L + G V ++ P+Y + G + K
Sbjct: 1 MNILFAVSECVPFVKSGGLADVAGALPKELKKLGVEVRIILPNYSLIPQKLRDGCTLHKV 60
Query: 336 YRVDR--QDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYG---GGREIPWYVPCGGVC- 389
V ++ + DG+ + +D+ + +++YG G ++ C
Sbjct: 61 INVPLGWRNQYCGILKGEQDGITYYLIDNEYY-FKRDSLYGHYDDGERFSYFSKAVLECI 119
Query: 390 -YGDGNL-VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYT 447
+ D + V ++DWHTA++ L+ Y+DN L ++ +++ IHN+ QG P + +Y
Sbjct: 120 PHLDFEVDVLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVYTIHNLQFQGVFP-PEVMYD 178
Query: 448 --DLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNII 505
+L Y +L + G + N G+ +D++ VS Y E++ G L ++
Sbjct: 179 LLELGDEYFHSEQL-EFYG--NVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLL 235
Query: 506 NEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVR 565
+ + KLSGIVNGIDT ++P D ++T+ Y D+L+ K + K ALQR FGLP +
Sbjct: 236 RKYNDKLSGIVNGIDTSVYNPETDSYITAQ----YDADSLYE-KNENKRALQRYFGLPEK 290
Query: 566 DDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRF 610
+D P+I + RL QKG+DL+ +M +DVQ +G + +
Sbjct: 291 EDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEY 335
>TIGR_CMR|GSU_3257 [details] [associations]
symbol:GSU_3257 "glycogen synthase" species:243231
"Geobacter sulfurreducens PCA" [GO:0004373 "glycogen (starch)
synthase activity" evidence=ISS] [GO:0005978 "glycogen biosynthetic
process" evidence=ISS] HAMAP:MF_00484 InterPro:IPR001296
InterPro:IPR011835 Pfam:PF00534 UniPathway:UPA00164 GO:GO:0005978
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR013534
Pfam:PF08323 eggNOG:COG0297 HOGENOM:HOG000294940 KO:K00703
GO:GO:0009011 TIGRFAMs:TIGR02095 RefSeq:NP_954298.1
ProteinModelPortal:Q747K8 GeneID:2685785 KEGG:gsu:GSU3257
PATRIC:22029355 OMA:DEWNPAA ProtClustDB:CLSK829188
BioCyc:GSUL243231:GH27-3233-MONOMER Uniprot:Q747K8
Length = 484
Score = 388 (141.6 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 112/343 (32%), Positives = 164/343 (47%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRK-RY 336
M V++VA+E P+++TGGL +V ALP AL R GH V V+ P Y A + G+RK R
Sbjct: 1 MKVLMVASEVAPFARTGGLAEVTAALPAALRRMGHDVRVIMPFY-RCAAQTELGVRKARK 59
Query: 337 RVD---RQDIEVAYF-QAYIDGVDFVFLDSPLFRHLGNNIYGGGR-EIP-----WYVPCG 386
+ + + QA + V +++ F + +YG + P + C
Sbjct: 60 SAEVSLNGETHKGFLRQAALGDVPVYLVENREF-FSRDYLYGTPEGDYPDNPRRFAFFCR 118
Query: 387 GVCYGDGNL-----VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPV 441
V + V +DW TAL+P+ L+ D+ T ++ IHN+A+QG P
Sbjct: 119 SVLQFLKRMDFRPDVIHCHDWQTALIPIILRLEAADDPFFARTATVFTIHNLAYQGLFPA 178
Query: 442 SDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 501
T LP L + + G N+ + TAD + TVS Y E+ T G GL
Sbjct: 179 PAIAETGLPSA-LFTTEWLEYYG--QLNLMKGAILTADLITTVSETYRREIMTPTQGCGL 235
Query: 502 HNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFG 561
++ L GIVNGIDT EW+P D + + NY L GK K LQRE G
Sbjct: 236 EGVLARRGDDLFGIVNGIDTDEWNPAADKRI----FRNYSARAL-AGKAADKLELQRELG 290
Query: 562 LPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
+P VP+IG + RL QKG+DL+ E +P + ++Q +G
Sbjct: 291 MPAAPSVPLIGMVSRLAEQKGIDLVLELLPRLAESELQFVLLG 333
>UNIPROTKB|Q9KRB6 [details] [associations]
symbol:glgA "Glycogen synthase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004373 "glycogen
(starch) synthase activity" evidence=ISS] [GO:0005978 "glycogen
biosynthetic process" evidence=ISS] HAMAP:MF_00484
InterPro:IPR001296 InterPro:IPR011835 Pfam:PF00534
UniPathway:UPA00164 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005978 CAZy:GT5 InterPro:IPR013534 Pfam:PF08323
eggNOG:COG0297 KO:K00703 GO:GO:0009011 TIGRFAMs:TIGR02095
ProtClustDB:PRK00654 GO:GO:0004373 PIR:F82165 RefSeq:NP_231362.1
ProteinModelPortal:Q9KRB6 DNASU:2613731 GeneID:2613731
KEGG:vch:VC1726 PATRIC:20082512 OMA:VSATHIT Uniprot:Q9KRB6
Length = 484
Score = 337 (123.7 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 106/338 (31%), Positives = 156/338 (46%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV 338
NV +E K+GGL DVA ALP+AL +V + P Y + +D + +
Sbjct: 5 NVWFTVSEVQGLVKSGGLADVAKALPQALKALHQQVAIALPAYRSVPGKEDAELVLETEL 64
Query: 339 DR-QDIEVAYFQAYIDGVDFVFLDSPLF-----RHLGNN-IYG-GGREIPWY-VPCGGVC 389
+ + +DGV +D P + + NN Y G ++ C V
Sbjct: 65 THWPHTQYRVLKRDLDGVPIYLIDCPAYFDRPALYAENNQAYADNGERFGFFSAACLDVL 124
Query: 390 --YGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDF-VY 446
G + ANDWHT L+P LK YR + + +S+L +HN +G V
Sbjct: 125 PKLGIQPDIIHANDWHTGLVPFLLKTRYRYDSFFEQVKSVLTVHNAIFKGIFSYHQLEVI 184
Query: 447 TDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIIN 506
+L ++ F Y G +H ++ AG+ AD+V VS Y+ EL T G GL +
Sbjct: 185 PELNLSGME-FLQY---GHDHVSMLRAGIAFADKVNAVSPNYAAELLTPLGAHGLVDDFV 240
Query: 507 EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRD 566
L GIVNG D EW+P D +L + Y++ +++ GK CK ALQ E LPV D
Sbjct: 241 RRARDLHGIVNGCDYSEWNPRTDHYLPAT-YSDEP-ESMRKGKALCKTALQEELHLPVTD 298
Query: 567 DVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
VP+ G + RL HQKG + + + +VQ+ VG
Sbjct: 299 -VPLFGMVCRLTHQKGFHYLLPILEQFLRNNVQVVIVG 335
>TIGR_CMR|VC_1726 [details] [associations]
symbol:VC_1726 "glycogen synthase" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004373 "glycogen (starch) synthase
activity" evidence=ISS] [GO:0005978 "glycogen biosynthetic process"
evidence=ISS] HAMAP:MF_00484 InterPro:IPR001296 InterPro:IPR011835
Pfam:PF00534 UniPathway:UPA00164 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005978 CAZy:GT5 InterPro:IPR013534
Pfam:PF08323 eggNOG:COG0297 KO:K00703 GO:GO:0009011
TIGRFAMs:TIGR02095 ProtClustDB:PRK00654 GO:GO:0004373 PIR:F82165
RefSeq:NP_231362.1 ProteinModelPortal:Q9KRB6 DNASU:2613731
GeneID:2613731 KEGG:vch:VC1726 PATRIC:20082512 OMA:VSATHIT
Uniprot:Q9KRB6
Length = 484
Score = 337 (123.7 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 106/338 (31%), Positives = 156/338 (46%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV 338
NV +E K+GGL DVA ALP+AL +V + P Y + +D + +
Sbjct: 5 NVWFTVSEVQGLVKSGGLADVAKALPQALKALHQQVAIALPAYRSVPGKEDAELVLETEL 64
Query: 339 DR-QDIEVAYFQAYIDGVDFVFLDSPLF-----RHLGNN-IYG-GGREIPWY-VPCGGVC 389
+ + +DGV +D P + + NN Y G ++ C V
Sbjct: 65 THWPHTQYRVLKRDLDGVPIYLIDCPAYFDRPALYAENNQAYADNGERFGFFSAACLDVL 124
Query: 390 --YGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDF-VY 446
G + ANDWHT L+P LK YR + + +S+L +HN +G V
Sbjct: 125 PKLGIQPDIIHANDWHTGLVPFLLKTRYRYDSFFEQVKSVLTVHNAIFKGIFSYHQLEVI 184
Query: 447 TDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIIN 506
+L ++ F Y G +H ++ AG+ AD+V VS Y+ EL T G GL +
Sbjct: 185 PELNLSGME-FLQY---GHDHVSMLRAGIAFADKVNAVSPNYAAELLTPLGAHGLVDDFV 240
Query: 507 EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRD 566
L GIVNG D EW+P D +L + Y++ +++ GK CK ALQ E LPV D
Sbjct: 241 RRARDLHGIVNGCDYSEWNPRTDHYLPAT-YSDEP-ESMRKGKALCKTALQEELHLPVTD 298
Query: 567 DVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
VP+ G + RL HQKG + + + +VQ+ VG
Sbjct: 299 -VPLFGMVCRLTHQKGFHYLLPILEQFLRNNVQVVIVG 335
>UNIPROTKB|P0A6U8 [details] [associations]
symbol:glgA species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0009011 "starch synthase activity" evidence=IEA;IDA]
[GO:0005978 "glycogen biosynthetic process" evidence=IEA;IMP]
HAMAP:MF_00484 InterPro:IPR001296 InterPro:IPR011835 Pfam:PF00534
UniPathway:UPA00164 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0005978 GO:GO:0006974 InterPro:IPR013534 Pfam:PF08323
eggNOG:COG0297 KO:K00703 GO:GO:0009011 TIGRFAMs:TIGR02095
OMA:ADVIMVP ProtClustDB:PRK00654 EMBL:V00281 EMBL:J02616
EMBL:J01616 PIR:H65138 RefSeq:NP_417887.1 RefSeq:YP_492004.1
PDB:2QZS PDB:2R4T PDB:2R4U PDB:3COP PDB:3CX4 PDB:3D1J PDB:3GUH
PDBsum:2QZS PDBsum:2R4T PDBsum:2R4U PDBsum:3COP PDBsum:3CX4
PDBsum:3D1J PDBsum:3GUH ProteinModelPortal:P0A6U8 SMR:P0A6U8
IntAct:P0A6U8 PRIDE:P0A6U8 EnsemblBacteria:EBESCT00000004694
EnsemblBacteria:EBESCT00000004695 EnsemblBacteria:EBESCT00000004696
EnsemblBacteria:EBESCT00000016997 GeneID:12933507 GeneID:947932
KEGG:ecj:Y75_p3748 KEGG:eco:b3429 PATRIC:32122298 EchoBASE:EB0372
EcoGene:EG10377 HOGENOM:HOG000294941
BioCyc:EcoCyc:GLYCOGENSYN-MONOMER BioCyc:ECOL316407:JW3392-MONOMER
BioCyc:MetaCyc:GLYCOGENSYN-MONOMER EvolutionaryTrace:P0A6U8
Genevestigator:P0A6U8 Uniprot:P0A6U8
Length = 477
Score = 329 (120.9 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 106/346 (30%), Positives = 160/346 (46%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREIPWYVPCG-- 386
V R+D + + +GV +D+P L+ G+ N++ + + G
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWV 116
Query: 387 GVCYGDGNLVFI------ANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
G G F A+DWH L P YL A R +S+ +HN+A+QG
Sbjct: 117 GAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFY 170
Query: 441 VSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 500
LP + ++ L G+ + AGL AD + VS Y+ E+ + +G
Sbjct: 171 AHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTYAREITEPQFAYG 227
Query: 501 LHNIINEV--DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 558
+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL K + K LQ
Sbjct: 228 MEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLED-KAENKRQLQI 282
Query: 559 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>TAIR|locus:2141936 [details] [associations]
symbol:SS4 "starch synthase 4" species:3702 "Arabidopsis
thaliana" [GO:0009011 "starch synthase activity" evidence=IEA]
[GO:0009058 "biosynthetic process" evidence=IEA] [GO:0009250
"glucan biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016757 "transferase activity,
transferring glycosyl groups" evidence=ISS] [GO:0005982 "starch
metabolic process" evidence=RCA;IMP] [GO:0000272 "polysaccharide
catabolic process" evidence=RCA] [GO:0001666 "response to hypoxia"
evidence=RCA] [GO:0009664 "plant-type cell wall organization"
evidence=RCA] [GO:0019252 "starch biosynthetic process"
evidence=RCA] [GO:0019375 "galactolipid biosynthetic process"
evidence=RCA] HAMAP:MF_00484 InterPro:IPR001296 InterPro:IPR011835
Pfam:PF00534 UniPathway:UPA00152 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR InterPro:IPR013534 Pfam:PF08323
EMBL:AL161548 GO:GO:0009501 GO:GO:0005982 GO:GO:0009011
TIGRFAMs:TIGR02095 GO:GO:0019252 EMBL:AL021713 EMBL:AK226610
IPI:IPI00524471 PIR:T04926 RefSeq:NP_193558.3 UniGene:At.46236
ProteinModelPortal:Q0WVX5 STRING:Q0WVX5 PRIDE:Q0WVX5
EnsemblPlants:AT4G18240.1 GeneID:827550 KEGG:ath:AT4G18240
TAIR:At4g18240 InParanoid:Q0WVX5 OMA:LVGCITR PhylomeDB:Q0WVX5
ProtClustDB:PLN02939 Genevestigator:Q0WVX5 Uniprot:Q0WVX5
Length = 1040
Score = 235 (87.8 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
Identities = 77/219 (35%), Positives = 107/219 (48%)
Query: 400 NDWHTALL-PVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDL-F 457
+DW TA + P+Y Y GL R HN +QG S+ L + L+
Sbjct: 677 HDWQTAFVAPLYWDLY-APKGL-DSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPD 734
Query: 458 KLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN 517
++ D G+ N + ++ V TVS Y+ E++TAEGG GLH+ +N K GI+N
Sbjct: 735 RMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILN 794
Query: 518 GIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDV-PVIGFIGR 576
GIDT W+P D L + + L GK + K AL+++ GL + P++G I R
Sbjct: 795 GIDTDSWNPATDPFLKAQ----FNAKDLQ-GKEENKHALRKQLGLSSAESRRPLVGCITR 849
Query: 577 LDHQKGVDLIAEAIPWMM---GQDVQL--SHVGHWQTRF 610
L QKGV LI AI + GQ V L S V H Q F
Sbjct: 850 LVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREF 888
Score = 121 (47.7 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 241 KEER-HEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDV 299
K+ R H+ +D + + + I + P +G + V+ +AAE P +K GGLGDV
Sbjct: 507 KDRRIHDTYIDVKDKNERDAISAFLKLVSSPTSSG---LYVVHIAAEMAPVAKVGGLGDV 563
Query: 300 AGALPKALARRGHRVMVVAPHY 321
L KAL R+GH V ++ P Y
Sbjct: 564 VAGLGKALQRKGHLVEIILPKY 585
Score = 37 (18.1 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 88 DSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDI 125
++LQ ++++ K +LQQ + R V I+ +
Sbjct: 359 ETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESL 396
Score = 37 (18.1 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
Identities = 22/106 (20%), Positives = 50/106 (47%)
Query: 2 ASIRSLSFMVE--TK-ADSYVVLFSKNQ-YRPSSSFSAFRPKKSPIFAFLNNSVSGFSFR 57
A + +L +++ TK A+ V++ +NQ R K++ ++ + + ++
Sbjct: 356 AKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESLKEANVYKESSEKIQQYNEL 415
Query: 58 SNKSGHLLKVKHVKATGA--GFVE--DESGNEPEDSLQATIEKSKK 99
LL+ + K+ +V+ ES E +++L++ E+SKK
Sbjct: 416 MQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQETLESLKEESKK 461
>UNIPROTKB|Q4KCP0 [details] [associations]
symbol:glgA "Glycogen synthase" species:220664 "Pseudomonas
protegens Pf-5" [GO:0004373 "glycogen (starch) synthase activity"
evidence=ISS] [GO:0005978 "glycogen biosynthetic process"
evidence=ISS] HAMAP:MF_00484 InterPro:IPR001296 InterPro:IPR011835
Pfam:PF00534 UniPathway:UPA00164 GO:GO:0005978 EMBL:CP000076
GenomeReviews:CP000076_GR CAZy:GT5 InterPro:IPR013534 Pfam:PF08323
eggNOG:COG0297 KO:K00703 GO:GO:0009011 TIGRFAMs:TIGR02095
ProtClustDB:PRK00654 HOGENOM:HOG000294941 RefSeq:YP_259993.2
STRING:Q4KCP0 GeneID:3477958 KEGG:pfl:PFL_2887 PATRIC:19875075
BioCyc:PFLU220664:GIX8-2901-MONOMER GO:GO:0004373 Uniprot:Q4KCP0
Length = 522
Score = 229 (85.7 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 105/371 (28%), Positives = 159/371 (42%)
Query: 257 SEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMV 316
S P+ P + P N V+ V +E KTGGLGDV+ ALP+A+A H V V
Sbjct: 24 SVPV-PGNKTVLPLARPNPNRKRVLFVTSEIADLVKTGGLGDVSAALPRAMAHL-HDVRV 81
Query: 317 VAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVD----FVFLDSPLFRHLGNNI 372
+ P Y ++ I + A +D D +V + L+ G
Sbjct: 82 LIPGYPQVLHSENP-IHIIGELGGHAALPACKIGRMDMPDGLVIYVLICPELYEREGTP- 139
Query: 373 YGG--GREIPW-YVPCG--GVCYGD--GNLVFI--------ANDWHTALLPVYLKAYYRD 417
YG GR+ P ++ G+ D NL I A+DW L P Y+ ++R
Sbjct: 140 YGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWCPDLVHAHDWPAGLAPAYM--HWRG 197
Query: 418 NGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDL--FKLYDPVGGEHFNIFAAGL 475
Q T +L IHN+A+QG ++ +P H L + Y G+ + AG+
Sbjct: 198 ----QRTPTLFTIHNLAYQGVVSLASCPELGIPEHALQQEGMEFY----GK-LSFLKAGM 248
Query: 476 KTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWK--LSGIVNGIDTKEWSPMYDIHLT 533
A + TVS Y+ E+ T G GL + + LSGI NGID + W D HL
Sbjct: 249 AYASHITTVSATYAQEITTPAFGCGLDGFLASKTQQGLLSGIPNGID-ESWDAATDAHLL 307
Query: 534 SDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWM 593
T + + GK A +++ FGL P+ + RL +QKG+DL ++
Sbjct: 308 ----TPFSIGDWD-GKAANAAHVRQMFGLDASSG-PLFAVVSRLVYQKGLDLTEAVAEFI 361
Query: 594 MGQDVQLSHVG 604
+ Q++ +G
Sbjct: 362 VQSGGQIAIIG 372
>POMBASE|SPCC63.04 [details] [associations]
symbol:mok14 "alpha-1,4-glucan synthase Mok14"
species:4896 "Schizosaccharomyces pombe" [GO:0005619 "ascospore
wall" evidence=IDA] [GO:0005628 "prospore membrane" evidence=NAS]
[GO:0030476 "ascospore wall assembly" evidence=IMP] [GO:0030979
"alpha-glucan biosynthetic process" evidence=IMP] [GO:0033201
"alpha-1,4-glucan synthase activity" evidence=IMP] [GO:0047657
"alpha-1,3-glucan synthase activity" evidence=IEA] [GO:0070630
"(1->4)-alpha-glucan biosynthetic process" evidence=IMP]
InterPro:IPR001296 Pfam:PF00534 PomBase:SPCC63.04 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030476 GO:GO:0005628 GO:GO:0005619
CAZy:GT5 GO:GO:0047657 GO:GO:0033201 InterPro:IPR013534
Pfam:PF08323 eggNOG:COG0297 KO:K00749 EMBL:AB018383 PIR:T43433
RefSeq:NP_587978.1 ProteinModelPortal:Q9Y704
EnsemblFungi:SPCC63.04.1 GeneID:2539506 KEGG:spo:SPCC63.04
HOGENOM:HOG000089812 OrthoDB:EOG422DVQ NextBio:20800668
GO:GO:0070630 Uniprot:Q9Y704
Length = 1369
Score = 170 (64.9 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 97/403 (24%), Positives = 167/403 (41%)
Query: 238 SSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAA-ECG-P-WS--- 291
S K+ ++ D++ + DS + + +P + + IL A E P W+
Sbjct: 214 SKKKDSWLKRSKDELLRTDSANLLTLNDNDEPVMIRHSCKRTCILFATLEYNIPEWNIKI 273
Query: 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEP-QDTGIRKRYRVDRQDIEVAYFQA 350
K GGLG +A + K L + + ++ V P G+ P +T +V QD EV F
Sbjct: 274 KIGGLGVMAELMSKTLKQ--YDLVWVVPCVGDITYPVAETAPSLVVKVVNQDYEVKVFYH 331
Query: 351 YIDGVDFVFLDSPLFR-HLGNNIYGGGRE-IP-------WYVPCGGVCYGDGNLVFIAND 401
Y D + +V LDSP+FR ++ Y + I W + + ++ ND
Sbjct: 332 YKDNIKYVLLDSPIFRKRTSHDPYPPRMDDISSAIFYSVWNQSIAAIIRREKVDIYHIND 391
Query: 402 WHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFV-YTDLPGHY---LDLF 457
+H AL P+Y L + + +HN QG P+ + ++ G + +
Sbjct: 392 YHGALAPIY--------NLPEVIPCAISLHNAEFQGLWPLQSSIDEREVCGLFNVSKTIC 443
Query: 458 KLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIIN-EVDWKLSGIV 516
+ Y G FN+ G+ R + GY + +G + + V W L I
Sbjct: 444 REYIQFGNA-FNLMHCGVSYVRRHQS---GYG--VVGVSNKYGQRSWVRYPVFWSLKKI- 496
Query: 517 NGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTG--KPQCKAALQREFGLPVRDDVPVIGFI 574
G P DI L+ + D + + K Q GL + D+ ++ F+
Sbjct: 497 -G-QLPNPDPT-DIGLSVNPVNQQLPDFAEYASVRKENKRKAQEWAGLTIDDEADLLVFV 553
Query: 575 GRLDHQKGVDLIAEAIPWMMGQ-DVQLSHVGHWQTRFGRDAEE 616
GR QKG+D++A+ P ++ + ++QL VG +G+ A E
Sbjct: 554 GRWSVQKGIDILADLAPTLLEKFNIQLIVVGPLIDLYGKFAAE 596
>TIGR_CMR|SO_1499 [details] [associations]
symbol:SO_1499 "glycogen synthase" species:211586
"Shewanella oneidensis MR-1" [GO:0004373 "glycogen (starch)
synthase activity" evidence=ISS] [GO:0005978 "glycogen biosynthetic
process" evidence=ISS] InterPro:IPR001296 Pfam:PF00534
GO:GO:0009058 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR013534 Pfam:PF08323 HOGENOM:HOG000294940 KO:K00703
GO:GO:0009011 RefSeq:NP_717116.1 ProteinModelPortal:Q8EGU2
GeneID:1169309 KEGG:son:SO_1499 PATRIC:23522640 OMA:TKFAFLC
ProtClustDB:CLSK906292 Uniprot:Q8EGU2
Length = 534
Score = 104 (41.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 43/139 (30%), Positives = 67/139 (48%)
Query: 400 NDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPV----SDFV--YTDLPGHY 453
+DWHT L + L+A + +Q + IHN+A QG P+ S F + L H
Sbjct: 144 HDWHTGCLAM-LRALAPEYQALQAIECVFSIHNLALQGIRPLGHDASSFAAWFPSLFAH- 201
Query: 454 LDLFKLYDPVGGEH---FNIFAAGLKTADRVVTVSRGYSWELKTAE-------GGWGLH- 502
LD+ +L D + + N G++ ADRV VS Y+ E+ GG GL
Sbjct: 202 LDVTQLADIIDPRYPHCINPMRMGIRLADRVHLVSPTYAKEVLLPSQPERGFFGGEGLEA 261
Query: 503 NIINEVDW-KLSGIVNGID 520
++ ++ D ++ GI+NG D
Sbjct: 262 DLQHKADQGRVLGILNGCD 280
Score = 95 (38.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 280 VILVAAECGPW--SKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
+++VAAE G +K GG+ DV LP+ALA G + V+ P YG + Q +
Sbjct: 4 ILMVAAENGALKGAKVGGMADVIRDLPQALAGVGIQADVIMPSYG-FLTAQGAKQIGEFD 62
Query: 338 VD---RQDIEVAYFQAY--IDGVDFVFLDSPLFRHLGNNIYGGG 376
V R ++ Y+ A+ + G + L+ L++ + IY G
Sbjct: 63 VSFAGRHELIKLYWLAHPLVPGANIYLLEHGLWQSIPGQIYSQG 106
>UNIPROTKB|Q9XHN9 [details] [associations]
symbol:Q9XHN9 "Granule bound starch synthase" species:39947
"Oryza sativa Japonica Group" [GO:0005982 "starch metabolic
process" evidence=IEP] GO:GO:0009507 CAZy:GT5 InterPro:IPR013534
Pfam:PF08323 GO:GO:0005982 EMBL:AF092444 STRING:Q9XHN9
Gramene:Q9XHN9 Uniprot:Q9XHN9
Length = 113
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALA 308
GA MNV+ V AE PWSKTGGLGDV G LP A+A
Sbjct: 80 GAG-MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMA 113
>ASPGD|ASPL0000036014 [details] [associations]
symbol:agsB species:162425 "Emericella nidulans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0043169 "cation
binding" evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0009277 "fungal-type cell wall" evidence=IEA] [GO:0044117
"growth of symbiont in host" evidence=IEA] [GO:0035690 "cellular
response to drug" evidence=IEA] [GO:0006582 "melanin metabolic
process" evidence=IEA] [GO:0009847 "spore germination"
evidence=IEA] [GO:0070596 "(1->3)-alpha-glucan biosynthetic
process" evidence=IMP] InterPro:IPR001296 InterPro:IPR006047
InterPro:IPR013781 Pfam:PF00128 Pfam:PF00534 GO:GO:0009058
GO:GO:0003824 GO:GO:0043169 Gene3D:3.20.20.80 InterPro:IPR017853
SUPFAM:SSF51445 CAZy:GH13 eggNOG:COG0366 GO:GO:0005975
EMBL:BN001306 CAZy:GT5 HOGENOM:HOG000163916 OrthoDB:EOG4WT0JK
InterPro:IPR013534 Pfam:PF08323 EMBL:AACD01000055 KO:K00749
RefSeq:XP_660911.1 ProteinModelPortal:Q5B823
EnsemblFungi:CADANIAT00009751 GeneID:2874399 KEGG:ani:AN3307.2
OMA:QLIAVGP Uniprot:Q5B823
Length = 2444
Score = 149 (57.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 102/375 (27%), Positives = 156/375 (41%)
Query: 272 LAGA--NVMNVILVAA---ECGPWS---KTGGLGDVAGALPKALARRGHRVMV-VAPHYG 322
LAGA ++L+A + W K GGLG +A + K L GH+ ++ V P G
Sbjct: 1177 LAGAASGKRRMVLIATMEYDIEDWGIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVG 1233
Query: 323 NYAEPQDTGIRKR-YRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR---- 377
P DT + Q +V + + +V LD+P+FR + R
Sbjct: 1234 GVDYPVDTPAEPMTVTILGQAYQVNVQYHVLKNITYVLLDAPVFRQQTKSEPYPARMDDL 1293
Query: 378 EIPWYVPCGGVCYGDG------NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIH 431
+ Y C + +L I ND+H ++ P+YL G + + L +H
Sbjct: 1294 DSAVYYSAWNQCIAEAIKRFPVDLYHI-NDYHGSVAPLYLLP-----GTIP---ACLSLH 1344
Query: 432 NIAHQGRGPV-SDFVYTDLPGHY-LDLFKLYDPVG-GEHFNIFAAG---LKTADR---VV 482
N QG P+ + ++ + LD+ + + V GE FN+ AG L+ + V
Sbjct: 1345 NAEFQGLWPMRTQKEKEEVCSVFNLDVEVVRNYVQFGEVFNLLHAGASYLRVHQQGFGAV 1404
Query: 483 TVSRGYSWELKTAEG-GWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYC 541
VS+ Y WGL I N + S + G TKE S + D + D
Sbjct: 1405 GVSKKYGKRSYARYPIFWGLRKIGNLPNPDPSDV--GEWTKEDSLIKDEDIKVD------ 1456
Query: 542 LDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQ 599
G+ + K Q GL D ++ F+GR QKGVDLIA+ +P ++ +VQ
Sbjct: 1457 -PEFEAGRAELKRQAQEWAGLDQNPDADLLVFVGRWSMQKGVDLIADVMPAVLEARPNVQ 1515
Query: 600 LSHVGHWQTRFGRDA 614
L VG +GR A
Sbjct: 1516 LICVGPVIDLYGRFA 1530
>POMBASE|SPBC16D10.05 [details] [associations]
symbol:mok13 "alpha-1,3-glucan synthase Mok13"
species:4896 "Schizosaccharomyces pombe" [GO:0004556 "alpha-amylase
activity" evidence=ISM] [GO:0005619 "ascospore wall" evidence=IDA]
[GO:0005628 "prospore membrane" evidence=NAS] [GO:0030476
"ascospore wall assembly" evidence=IGI;IMP] [GO:0043169 "cation
binding" evidence=IEA] [GO:0047657 "alpha-1,3-glucan synthase
activity" evidence=IMP] [GO:0070600 "fungal-type cell wall
(1->3)-alpha-glucan biosynthetic process" evidence=IMP]
InterPro:IPR001296 InterPro:IPR006047 InterPro:IPR013781
Pfam:PF00128 Pfam:PF00534 PomBase:SPBC16D10.05 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13
eggNOG:COG0366 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030476 GO:GO:0005628 GO:GO:0005619 CAZy:GT5
HOGENOM:HOG000163916 OrthoDB:EOG4WT0JK GO:GO:0047657 GO:GO:0004556
InterPro:IPR013534 Pfam:PF08323 KO:K00749 EMBL:AB018382 PIR:T39569
PIR:T43432 RefSeq:NP_596500.1 ProteinModelPortal:Q9Y719
EnsemblFungi:SPBC16D10.05.1 GeneID:2540007 KEGG:spo:SPBC16D10.05
OMA:NDMINAN NextBio:20801150 GO:GO:0070600 Uniprot:Q9Y719
Length = 2358
Score = 134 (52.2 bits), Expect = 0.00012, P = 0.00012
Identities = 104/432 (24%), Positives = 170/432 (39%)
Query: 212 KLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPP 271
+L KG + + W ++L SR + + + H+ L+ + S + PK
Sbjct: 1088 RLNKGIEKKQEWKEKLLGPFSRISQSNINQGFSHQVALNN--SVKS--VHPKISR----- 1138
Query: 272 LAGANVMNVILVAAECGPWS---KTGGLGDVAGALPKALARRGHRVMVVAPHYG--NYAE 326
++ V + + W K GGLG +A + K L H ++ V P G NY +
Sbjct: 1139 ----KLILVATLEYDIPDWDIKIKIGGLGVMAELMGKHLTH--HDLIWVVPRVGDVNYPD 1192
Query: 327 PQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFR-HLGNNIYGGGRE------- 378
Q+ + +D Q EV + + + ++ L++P+FR Y +
Sbjct: 1193 GQELAPLEVVVLD-QVYEVRVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIF 1251
Query: 379 -IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQG 437
W G+ V+ ND+H AL P YL L +L +HN QG
Sbjct: 1252 YSAWNQCIAGIIRRYPIDVYHINDYHGALAPCYL--------LPNVIPCVLSLHNAEFQG 1303
Query: 438 RGPV-SDFVYTDLPGHYLDLFKLYDPV--GGEHFNIFAAGL------KTADRVVTVSRGY 488
P+ + ++ Y K+ G FN+ AG+ + VV VS Y
Sbjct: 1304 LWPLRTQAEKNEVCAVYNISTKICTKYIQFGNVFNLLHAGVSYIRIHQKGYGVVGVSNKY 1363
Query: 489 SWELKTAEG-GWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLD-TLH 546
K WGL + KL + +DT + +I ++ T +D T
Sbjct: 1364 GKRSKARYPIFWGLKKV-----GKLPN-PDPLDTAQLDDPTNI---TEEIT---IDLTAE 1411
Query: 547 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQD--VQLSHVG 604
K K Q+ L + D ++ F+GR QKG+DLIA+ P ++ QD QL +G
Sbjct: 1412 AEKRAFKRDAQKWTNLELDDSADLLVFVGRWSMQKGIDLIADIAPTLL-QDFNAQLITIG 1470
Query: 605 HWQTRFGRDAEE 616
+G+ A E
Sbjct: 1471 PIIDLYGKFAAE 1482
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 617 590 0.00083 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 622 (66 KB)
Total size of DFA: 343 KB (2171 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.52u 0.10s 56.62t Elapsed: 00:00:03
Total cpu time: 56.52u 0.10s 56.62t Elapsed: 00:00:03
Start: Tue May 21 03:28:47 2013 End: Tue May 21 03:28:50 2013