BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007130
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 187/366 (51%), Gaps = 39/366 (10%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT + +
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYG------------------ 374
V + V +F Y GVD VF+D P F G IYG
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 375 -GGREIPWYVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLV 429
E P + Y G ++VF+ NDWHT L YLK Y+ NG+ + +
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 430 IHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYD----PVGGEHFNIFAAGLKTADRVVTVS 485
IHNI++QGR D+ +L + F D PV G N AG+ ADRV+TVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 486 RGYSWELKTAEG-GWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDT 544
Y+ EL + G L NI+ ++GIVNG+D EW P D ++T+ Y T
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTG--ITGIVNGMDVSEWDPSKDKYITA----KYDATT 303
Query: 545 LHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
K K ALQ E GLPV +P+I FIGRL+ QKG D++A AIP +M +DVQ+ +G
Sbjct: 304 AIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLG 363
Query: 605 HWQTRF 610
+ +F
Sbjct: 364 TGKKKF 369
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 151/330 (45%), Gaps = 34/330 (10%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GREIP--W----YVPCGGVC 389
D + + + +D + LD+P + Y G G++ P W +
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAAR 120
Query: 390 YGDGNL------VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSD 443
G G L + A+DW A+ PVY++ Y + + SLL IHNIA QG+ +
Sbjct: 121 IGAGVLPGWRPDMVHAHDWQAAMTPVYMR--YAETPEIP---SLLTIHNIAFQGQFGANI 175
Query: 444 FVYTDLPGHYLDLFKLYDPVGGEHFN---IFAAGLKTADRVVTVSRGYSWELKTAEGGWG 500
F LP H + G E++N GL+TA + TVS Y+ E+ TAE G G
Sbjct: 176 FSKLALPAHAFGM------EGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMG 229
Query: 501 LHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREF 560
L +I L GIVNGID W+P D HL D Y+ L + K A+ F
Sbjct: 230 LEGVIGSRAHVLHGIVNGIDADVWNPATD-HLIHDNYSAANLKN----RALNKKAVAEHF 284
Query: 561 GLPVRDDVPVIGFIGRLDHQKGVDLIAEAI 590
+ D P+ I RL QKG+DL+AEA+
Sbjct: 285 RID-DDGSPLFCVISRLTWQKGIDLMAEAV 313
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 161/346 (46%), Gaps = 37/346 (10%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V++E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREIPWYVPCG-- 386
V R+D + + +GV +D+P L+ G+ N++ + + G
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWV 116
Query: 387 GVCYGDGNLVFI------ANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
G G F A+DWH L P YL A R +S+ +HN+A+QG
Sbjct: 117 GAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFY 170
Query: 441 VSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 500
LP + ++ L G+ + AGL AD + VS Y+ E+ + +G
Sbjct: 171 AHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTYAREITEPQFAYG 227
Query: 501 LHNIINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 558
+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL K + K LQ
Sbjct: 228 MEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLED-KAENKRQLQI 282
Query: 559 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 160/346 (46%), Gaps = 37/346 (10%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREIPWYVPCG-- 386
V R+D + + +GV +D+P L+ G+ N++ + + G
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWV 116
Query: 387 GVCYGDGNLVFI------ANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
G G F A+DWH L P YL A R +S+ +HN+A+QG
Sbjct: 117 GAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFY 170
Query: 441 VSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 500
LP + ++ L G+ + AGL AD + VS Y+ E+ + +G
Sbjct: 171 AHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTYAREITEPQFAYG 227
Query: 501 LHNIINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 558
+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL K + K LQ
Sbjct: 228 MEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLED-KAENKRQLQI 282
Query: 559 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 160/346 (46%), Gaps = 37/346 (10%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREIPWYVPCG-- 386
V R+D + + +GV +D+P L+ G+ N++ + + G
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWV 116
Query: 387 GVCYGDGNLVFI------ANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
G G F A+DWH L P YL A R +S+ +HN+A+QG
Sbjct: 117 GAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFY 170
Query: 441 VSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 500
LP + ++ L G+ + AGL AD + VS Y+ E+ + +G
Sbjct: 171 AHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTYAREITEPQFAYG 227
Query: 501 LHNIINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 558
+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL K + K LQ
Sbjct: 228 MEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLED-KAENKRQLQI 282
Query: 559 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 604
GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 146/329 (44%), Gaps = 34/329 (10%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV 338
NV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61
Query: 339 DRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GREIP--W----YVPCGGVCY 390
D + + + +D + LD+P + Y G G++ P W +
Sbjct: 62 DLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARI 121
Query: 391 GDGNL------VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDF 444
G G L A+DW A PVY + Y + + SLL IHNIA QG+ + F
Sbjct: 122 GAGVLPGWRPDXVHAHDWQAAXTPVYXR--YAETPEIP---SLLTIHNIAFQGQFGANIF 176
Query: 445 VYTDLPGHYLDLFKLYDPVGGEHFN---IFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 501
LP H + G E++N GL+TA + TVS Y+ E+ TAE G GL
Sbjct: 177 SKLALPAH------AFGXEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGXGL 230
Query: 502 HNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFG 561
+I L GIVNGID W+P D HL D Y+ L + K A+ F
Sbjct: 231 EGVIGSRAHVLHGIVNGIDADVWNPATD-HLIHDNYSAANLKN----RALNKKAVAEHFR 285
Query: 562 LPVRDDVPVIGFIGRLDHQKGVDLIAEAI 590
+ D P+ I RL QKG+DL AEA+
Sbjct: 286 ID-DDGSPLFCVISRLTWQKGIDLXAEAV 313
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 135/336 (40%), Gaps = 87/336 (25%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREIPWYVPCGGVCYGDGN 394
+ ++V+Y + I + LDS ++YG G + + V +G +
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWD---GLIRKAVTFGRAS 109
Query: 395 LVFIAN--------------DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
++ + + DWHT +K Y++ ++ IH +
Sbjct: 110 VLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK----- 157
Query: 441 VSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTA 495
+ LP Y L Y + EH G AD V TVSRGY +
Sbjct: 158 ------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLID---- 202
Query: 496 EGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAA 555
WG + K++ + NGID W+ Y L + + K +
Sbjct: 203 --EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRDERKKS 241
Query: 556 LQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 590
L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 242 LLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 274
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 135/336 (40%), Gaps = 87/336 (25%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 4 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 60
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREIPWYVPCGGVCYGDGN 394
+ ++V+Y + I + LDS ++YG G + + V +G +
Sbjct: 61 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWD---GLIRKAVTFGRAS 110
Query: 395 LVFIAN--------------DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGP 440
++ + + DWHT +K Y++ ++ IH +
Sbjct: 111 VLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK----- 158
Query: 441 VSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTA 495
+ LP Y L Y + EH G AD V TVSRGY +
Sbjct: 159 ------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLID---- 203
Query: 496 EGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAA 555
WG + K++ + NGID W+ Y L + + K +
Sbjct: 204 --EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRDERKKS 242
Query: 556 LQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 590
L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 243 LLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 275
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 89/337 (26%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREIPW-YVPCGGVCYGDG 393
+ ++V+Y + I + LDS ++YG G W + V +G
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPG----WDGLIRKAVTFGRA 108
Query: 394 NLVFIAN--------------DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRG 439
+++ + + DWHT +K Y++ ++ IH +
Sbjct: 109 SVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK---- 157
Query: 440 PVSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKT 494
+ LP Y L Y + EH G AD V TVSRGY +
Sbjct: 158 -------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLID--- 202
Query: 495 AEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKA 554
WG + K++ + NGID W+ Y L + + K
Sbjct: 203 ---EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRDERKK 240
Query: 555 ALQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 590
+L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 241 SLLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 274
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 47 LNNSVSGFSFRS-NKSGHLLKVKHVKAT--GAGFVEDESGNEPEDSLQATIEKSKKVLAM 103
LN ++ F+ R ++GH ++V + A AG+ D+SG P SK+ A
Sbjct: 37 LNGALKNFAIRHLQQAGHEVQVSDLYAXRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96
Query: 104 QKQLLQQISERRKLV 118
Q ++E+ KL+
Sbjct: 97 GTQSADIVAEQEKLL 111
>pdb|3D1L|A Chain A, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
pdb|3D1L|B Chain B, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
Length = 266
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 295 GLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354
G G++A L KAL R+G R++ V A + Y D ++ Y + YI
Sbjct: 17 GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVN-PYAKLYI-- 73
Query: 355 VDFVFLDSPLFRHLGNNIYGGGREIPWYVPCGG 387
V L F L I G RE V G
Sbjct: 74 ---VSLKDSAFAELLQGIVEGKREEALXVHTAG 103
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 550 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVG 604
P+ K+A +++ G D PVI RL +KG D + +A+P ++ D QL VG
Sbjct: 182 PEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 550 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVG 604
P+ K+A +++ G D PVI RL +KG D + +A+P ++ D QL VG
Sbjct: 182 PEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 197 NRLSPE--KESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQ 254
N PE K +D D++ L G++TQ W+ P+ +T+VIS+ E + D Q
Sbjct: 298 NIYKPEFAKTVLDKDTAGSLTGSNTQYNWN---PT--GKTSVISNGSESLNVDLFDSSQD 352
Query: 255 IDSEPIEPKTEEAKPPPLAGANVM 278
DS+ K K L G+ +
Sbjct: 353 TDSK----KNNHGKSVTLRGSGTL 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,736,679
Number of Sequences: 62578
Number of extensions: 848005
Number of successful extensions: 1957
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1907
Number of HSP's gapped (non-prelim): 30
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)