BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007131
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD-LRAHKCDIAMAA 96
V W SLPD+ ++ + SCL + +S C+ W L + LW +LD R D++ +
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSV 66
Query: 97 -------SLASRCMNLQKLRFRGAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIV 147
+ S+C LQ L G +D I++ A+ NL L+ C ++ L ++
Sbjct: 67 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 126
Query: 148 ARHEALESLQLG--PDFCERITSDAVKAIALCCPKLKKLRLSGIR-DICGDAINALAKLC 204
+ L+ L L DF E+ AV ++ + +L LSG R ++ ++ L + C
Sbjct: 127 SSCSRLDELNLSWCFDFTEKHVQVAVAHVS---ETITQLNLSGYRKNLQKSDLSTLVRRC 183
Query: 205 PNLTDIGFLD 214
PNL + D
Sbjct: 184 PNLVHLDLSD 193
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 52/245 (21%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR----------- 86
V W SLPD+ ++ + SCL + +S C+ W L + LW +LDL
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGR 66
Query: 87 -------AHKC----------------------------DIAMAASLASRCMNLQKLRFR 111
A +C +++ + S+C LQ L
Sbjct: 67 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126
Query: 112 GAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD 169
G +D I++ A+ NL L+ C ++ L +++ L+ L L +C T
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS--WCFDFTEK 184
Query: 170 AVK-AIALCCPKLKKLRLSGIR-DICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVL 227
V+ A+A + +L LSG R ++ ++ L + CPNL + D + +
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244
Query: 228 SVRFL 232
+ +L
Sbjct: 245 QLNYL 249
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 12/193 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L+ L+ ST + Q+ AA LA E AS +A++ GG+ +L+ L S
Sbjct: 7 LVKLLTSTDSETQKEAARDLA-------EIASGPASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 444 LQSEAAKAIANL-SVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAAGGLWNLSVG-EE 501
+Q EAA+A+AN+ S + +L L S + V +EAA L N++ G +E
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVALAGGVHALVM 561
AI DAGGV+ LV L+ S+ + E D+ + AGGV LV
Sbjct: 120 AIKAIVDAGGVEVLVKLL--TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 177
Query: 562 LARSCKFEGVQEQ 574
L S E VQ++
Sbjct: 178 LLTSTDSE-VQKE 189
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 45 DDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCM 103
DD + Q+M+ + + +DR S S CR W + + ++ L C A L+ R
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL----CYTATPDRLSRRFP 73
Query: 104 NLQKLRFRGAESADSI--------------IHLQARNLRELSGDYCRK--ITDATLSVIV 147
NL+ L+ +G A + + NLR+L + R+ ++D L +
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133
Query: 148 -ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184
AR + LE+L+L D C T+D + +I C K+K L
Sbjct: 134 KARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTL 169
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84
V W SLPD+ ++ + SCL + +S C+ W L + LW +LD
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 19/238 (7%)
Query: 387 LMQSTQE----DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L Q TQ+ D+QE+ + +++D N I +AV+ G + L+ L S E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI-----QAVIDAGALPALVQLLSSPNE 68
Query: 443 GLQSEAAKAIANL-SVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAAGGLWNL-SVGE 500
+ EA A++N+ S + L L S N + +EA L N+ S G
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGGVHAL 559
E A+ DAG + ALV L+ SS + +L+ ++ + AG + AL
Sbjct: 129 EQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 560 VMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
V L S + +QE N AV +EAGALE L QL +E ++
Sbjct: 186 VQLLSSPNEQILQE---ALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQ 239
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449
S+Q++ + DE+A + V + GGI L+DL +S + +Q AA
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESAK------QQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Query: 450 KAIANLSVNXXXXXXXXXXXX--INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA-I 506
A+ NL +++L R+ N + ++ G LWNLS +E K I
Sbjct: 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125
Query: 507 ADAGGVKALVD-LIFKWSSGGDG 528
ADA + L D +I +S DG
Sbjct: 126 ADA--LPVLADRVIIPFSGWCDG 146
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
AV +EAGA AL QL SP+E ++
Sbjct: 173 KQAV-KEAGAEPALEQLQSSPNEKIQ 197
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGG 555
S G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 556 VHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 98 LPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQ 153
Query: 616 V 616
+
Sbjct: 154 I 154
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AG 554
LS G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 555 GVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 97 ALPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNE 152
Query: 615 GV 616
+
Sbjct: 153 QI 154
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
AV +EAGALE L QL +E ++
Sbjct: 173 KQAV-KEAGALEKLEQLQSHENEKIQ 197
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
W SLPD+ ++ + SCL + +S C+ W L + LW
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>pdb|2IQC|A Chain A, Crystal Structure Of Human Fancf Protein That Functions In
The Assembly Of A Dna Damage Signaling Complex
Length = 210
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 113 AESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG--PDFCERITSDA 170
E + ++H N E+ +CR + L+++ +RH AL + LG D+ +R+ D
Sbjct: 84 GEGSQVLVHWLLGN-SEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDL 142
Query: 171 VKAI 174
K I
Sbjct: 143 QKGI 146
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
AV +EAGALE L QL +E ++
Sbjct: 173 KQAV-KEAGALEKLEQLQSHENEKIQ 197
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGG 555
S G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 556 VHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 98 LPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQ 153
Query: 616 V 616
+
Sbjct: 154 I 154
>pdb|2GJV|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|B Chain B, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|C Chain C, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|D Chain D, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|E Chain E, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|F Chain F, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
Length = 175
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 118 SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177
S+IH A LREL+ D I+ V + + + L +C + ++ A
Sbjct: 29 SVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLI---HYCGSVFAEPENTDATV 85
Query: 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215
+L ++ + I DAINAL +L +L I DC
Sbjct: 86 QKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDC 123
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
LP + + ++S L +D + TCR WR L LW
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 37/178 (20%)
Query: 42 SLPDDTVIQLMSCLNY-RDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLAS 100
S P++ + + S + +DR S+S C++W + W + C A++
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVFIGNCYAVSPATVIR 63
Query: 101 RCMNLQKLRFRGAESADSIIHLQARNL-------------RELSGDYC---------RKI 138
R ++ + +G H NL +S Y +
Sbjct: 64 RFPKVRSVELKGKP------HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117
Query: 139 TDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKK--LRLSGIRDICG 194
TD L +I + + L L CE ++D + AIA C LK+ LR S + D+ G
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSS--CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,140,250
Number of Sequences: 62578
Number of extensions: 537867
Number of successful extensions: 1395
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 37
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)