Query 007131
Match_columns 617
No_of_seqs 367 out of 4357
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 19:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 1.3E-26 2.8E-31 209.6 11.7 243 35-282 93-391 (419)
2 KOG4341 F-box protein containi 99.9 7.1E-27 1.5E-31 221.2 8.8 266 38-305 70-347 (483)
3 KOG4224 Armadillo repeat prote 99.9 5.4E-23 1.2E-27 190.3 17.3 227 376-616 163-392 (550)
4 KOG4224 Armadillo repeat prote 99.9 1.3E-21 2.7E-26 181.3 15.8 227 376-617 205-434 (550)
5 PLN03200 cellulose synthase-in 99.9 9E-20 2E-24 208.2 25.3 222 379-614 57-288 (2102)
6 KOG0166 Karyopherin (importin) 99.9 1.8E-20 4E-25 186.5 17.2 232 370-615 100-379 (514)
7 PLN03200 cellulose synthase-in 99.8 4.7E-20 1E-24 210.5 22.3 234 370-616 437-710 (2102)
8 KOG0166 Karyopherin (importin) 99.8 7.4E-20 1.6E-24 182.2 21.0 224 382-617 69-296 (514)
9 COG5064 SRP1 Karyopherin (impo 99.8 1.2E-19 2.7E-24 166.8 14.2 237 364-617 99-344 (526)
10 COG5064 SRP1 Karyopherin (impo 99.8 6.1E-19 1.3E-23 162.2 17.2 223 381-616 73-301 (526)
11 KOG4199 Uncharacterized conser 99.8 2.8E-16 6E-21 144.8 22.8 236 376-616 185-431 (461)
12 KOG4341 F-box protein containi 99.7 2.2E-18 4.9E-23 163.9 8.4 235 54-300 176-448 (483)
13 PF05804 KAP: Kinesin-associat 99.7 1.3E-16 2.9E-21 168.3 18.8 201 392-609 262-462 (708)
14 KOG2122 Beta-catenin-binding p 99.7 7.3E-17 1.6E-21 172.4 13.5 214 393-616 365-588 (2195)
15 PF05804 KAP: Kinesin-associat 99.7 1.4E-14 3.1E-19 153.2 23.0 235 361-612 273-545 (708)
16 PF04826 Arm_2: Armadillo-like 99.6 3.2E-14 6.9E-19 133.4 18.9 227 376-617 9-250 (254)
17 KOG1048 Neural adherens juncti 99.6 1E-13 2.2E-18 143.1 19.1 221 378-612 274-666 (717)
18 KOG4199 Uncharacterized conser 99.6 5.6E-13 1.2E-17 123.3 19.7 230 372-611 138-383 (461)
19 KOG1048 Neural adherens juncti 99.5 4.7E-14 1E-18 145.5 13.2 201 376-584 230-452 (717)
20 KOG3665 ZYG-1-like serine/thre 99.5 2.1E-12 4.5E-17 138.5 26.0 474 81-588 63-591 (699)
21 PF04826 Arm_2: Armadillo-like 99.5 8.4E-13 1.8E-17 123.8 16.2 180 423-612 7-187 (254)
22 KOG2120 SCF ubiquitin ligase, 99.4 1.3E-12 2.7E-17 119.5 7.0 174 79-257 211-391 (419)
23 cd00020 ARM Armadillo/beta-cat 99.3 4E-11 8.6E-16 101.2 15.1 117 423-542 2-120 (120)
24 cd00116 LRR_RI Leucine-rich re 99.3 6.2E-11 1.3E-15 119.0 18.9 187 101-294 79-294 (319)
25 cd00020 ARM Armadillo/beta-cat 99.3 4.3E-11 9.3E-16 100.9 14.2 116 464-583 2-119 (120)
26 KOG3665 ZYG-1-like serine/thre 99.3 3.6E-10 7.7E-15 121.5 24.0 190 104-299 61-270 (699)
27 KOG1947 Leucine rich repeat pr 99.3 5.7E-12 1.2E-16 134.4 10.1 209 88-298 173-421 (482)
28 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-10 3.6E-15 115.8 18.8 203 81-290 26-262 (319)
29 KOG2122 Beta-catenin-binding p 99.3 3.1E-11 6.8E-16 130.3 11.7 198 379-586 393-603 (2195)
30 KOG1947 Leucine rich repeat pr 99.2 8.2E-11 1.8E-15 125.5 10.6 139 123-262 186-330 (482)
31 KOG1909 Ran GTPase-activating 99.2 2.2E-10 4.7E-15 107.7 11.1 186 98-290 87-310 (382)
32 KOG1222 Kinesin associated pro 99.2 8.6E-10 1.9E-14 107.1 15.1 200 391-607 275-474 (791)
33 PF10508 Proteasom_PSMB: Prote 99.1 7E-09 1.5E-13 109.1 19.6 216 382-615 41-258 (503)
34 PF12937 F-box-like: F-box-lik 99.1 1.3E-10 2.9E-15 78.8 3.4 46 40-85 1-46 (47)
35 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.3E-09 1.1E-13 103.6 16.2 220 382-610 58-293 (312)
36 KOG3207 Beta-tubulin folding c 99.0 7.4E-11 1.6E-15 113.8 2.4 191 102-297 120-320 (505)
37 KOG4500 Rho/Rac GTPase guanine 99.0 1.5E-08 3.2E-13 97.5 17.0 224 382-616 90-418 (604)
38 PF10508 Proteasom_PSMB: Prote 99.0 1.5E-08 3.2E-13 106.7 18.6 193 382-584 80-278 (503)
39 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.9E-08 4.2E-13 99.5 16.3 185 382-576 108-306 (312)
40 KOG1222 Kinesin associated pro 99.0 1.7E-08 3.7E-13 98.3 15.1 224 377-614 342-604 (791)
41 KOG2160 Armadillo/beta-catenin 98.9 9.2E-08 2E-12 91.3 18.9 185 390-584 94-282 (342)
42 PLN00113 leucine-rich repeat r 98.9 2.4E-09 5.3E-14 124.0 7.4 41 251-292 282-322 (968)
43 KOG1909 Ran GTPase-activating 98.8 7.3E-08 1.6E-12 91.0 14.4 192 95-292 22-255 (382)
44 PLN00113 leucine-rich repeat r 98.8 5.2E-09 1.1E-13 121.3 7.7 85 204-291 211-297 (968)
45 PRK09687 putative lyase; Provi 98.8 7.8E-08 1.7E-12 92.8 13.7 95 381-498 25-120 (280)
46 KOG4646 Uncharacterized conser 98.8 8E-08 1.7E-12 77.4 11.2 136 424-562 12-149 (173)
47 cd00256 VATPase_H VATPase_H, r 98.7 6.7E-07 1.5E-11 89.9 17.9 221 382-611 56-287 (429)
48 KOG3207 Beta-tubulin folding c 98.7 4.4E-09 9.5E-14 101.9 2.2 207 81-295 124-343 (505)
49 KOG4500 Rho/Rac GTPase guanine 98.7 6.5E-07 1.4E-11 86.5 16.4 187 422-612 308-502 (604)
50 KOG0168 Putative ubiquitin fus 98.7 6.8E-07 1.5E-11 93.2 16.1 216 382-612 170-392 (1051)
51 KOG2160 Armadillo/beta-catenin 98.6 2.1E-06 4.6E-11 82.1 16.4 170 440-614 95-267 (342)
52 KOG4194 Membrane glycoprotein 98.6 6.5E-09 1.4E-13 104.1 -1.9 131 150-293 292-431 (873)
53 PRK09687 putative lyase; Provi 98.6 1.9E-06 4E-11 83.3 14.9 184 382-616 57-269 (280)
54 cd00256 VATPase_H VATPase_H, r 98.5 1.4E-05 3.1E-10 80.5 21.4 173 382-563 104-286 (429)
55 PLN03210 Resistant to P. syrin 98.5 1.8E-07 4E-12 109.0 8.8 85 203-294 800-885 (1153)
56 KOG2759 Vacuolar H+-ATPase V1 98.4 8E-06 1.7E-10 79.3 14.9 154 382-545 117-274 (442)
57 KOG1293 Proteins containing ar 98.4 5E-05 1.1E-09 77.8 21.2 215 382-607 422-650 (678)
58 KOG0946 ER-Golgi vesicle-tethe 98.3 3.8E-05 8.2E-10 80.0 18.5 217 378-611 21-265 (970)
59 smart00256 FBOX A Receptor for 98.3 6.1E-07 1.3E-11 58.9 3.6 40 43-82 1-40 (41)
60 KOG1293 Proteins containing ar 98.3 8.7E-06 1.9E-10 83.2 13.4 159 423-585 372-534 (678)
61 KOG0444 Cytoskeletal regulator 98.3 1.6E-08 3.5E-13 102.1 -6.3 179 101-292 171-376 (1255)
62 KOG4646 Uncharacterized conser 98.3 2.8E-06 6E-11 68.7 7.2 110 471-584 18-128 (173)
63 PF14580 LRR_9: Leucine-rich r 98.3 1.5E-07 3.3E-12 83.2 -0.1 107 173-286 36-148 (175)
64 PF00646 F-box: F-box domain; 98.3 1.4E-07 3.1E-12 64.3 -0.2 43 39-81 2-44 (48)
65 PRK13800 putative oxidoreducta 98.2 4.1E-05 8.8E-10 87.0 18.6 191 382-617 624-855 (897)
66 KOG4194 Membrane glycoprotein 98.2 1.9E-07 4.2E-12 93.8 -0.6 196 81-289 81-280 (873)
67 PLN03210 Resistant to P. syrin 98.2 1.4E-06 3E-11 101.7 6.0 82 102-190 633-715 (1153)
68 PRK13800 putative oxidoreducta 98.2 3.1E-05 6.7E-10 88.0 16.5 200 382-617 655-887 (897)
69 KOG0168 Putative ubiquitin fus 98.2 4.6E-05 1E-09 80.0 15.8 217 378-611 210-437 (1051)
70 PF00514 Arm: Armadillo/beta-c 98.2 2.6E-06 5.6E-11 55.6 4.3 41 458-498 1-41 (41)
71 PF05536 Neurochondrin: Neuroc 98.1 9.6E-05 2.1E-09 78.2 17.6 194 382-586 8-215 (543)
72 KOG0618 Serine/threonine phosp 98.1 1.1E-06 2.4E-11 93.3 2.6 108 180-290 360-488 (1081)
73 KOG2982 Uncharacterized conser 98.1 2E-06 4.3E-11 79.6 3.7 179 106-289 48-235 (418)
74 PF14580 LRR_9: Leucine-rich r 98.1 1.5E-06 3.2E-11 76.9 2.5 127 124-262 18-149 (175)
75 KOG3678 SARM protein (with ste 98.1 5.6E-05 1.2E-09 74.1 13.3 165 378-555 179-349 (832)
76 KOG3678 SARM protein (with ste 98.1 9.8E-05 2.1E-09 72.4 13.9 180 422-611 174-359 (832)
77 KOG2973 Uncharacterized conser 98.0 0.00015 3.3E-09 67.7 14.0 193 382-587 6-207 (353)
78 COG5238 RNA1 Ran GTPase-activa 98.0 9.1E-06 2E-10 74.3 5.8 188 100-294 89-319 (388)
79 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00017 3.7E-09 70.3 13.9 224 382-608 68-298 (442)
80 KOG1259 Nischarin, modulator o 97.9 3.8E-06 8.3E-11 77.8 2.0 181 96-292 175-388 (490)
81 PF00514 Arm: Armadillo/beta-c 97.9 1.7E-05 3.7E-10 51.7 4.1 40 418-457 2-41 (41)
82 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00051 1.1E-08 72.0 16.5 237 376-612 58-327 (970)
83 KOG2171 Karyopherin (importin) 97.9 0.00053 1.1E-08 75.2 17.1 185 382-582 351-544 (1075)
84 KOG3864 Uncharacterized conser 97.8 1.8E-05 4E-10 69.4 4.4 81 153-237 103-186 (221)
85 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.4E-10 74.8 2.5 200 81-286 74-287 (418)
86 KOG2734 Uncharacterized conser 97.8 0.0026 5.6E-08 62.5 18.1 238 368-608 114-369 (536)
87 PF13646 HEAT_2: HEAT repeats; 97.8 0.00011 2.5E-09 57.5 7.6 87 430-538 1-88 (88)
88 PF05536 Neurochondrin: Neuroc 97.7 0.00076 1.7E-08 71.5 15.2 153 429-587 6-171 (543)
89 KOG2171 Karyopherin (importin) 97.7 0.00082 1.8E-08 73.7 14.7 175 429-613 349-529 (1075)
90 COG5238 RNA1 Ran GTPase-activa 97.6 0.0017 3.7E-08 59.9 14.0 195 94-294 22-258 (388)
91 KOG2023 Nuclear transport rece 97.6 0.0013 2.7E-08 67.8 14.6 215 382-617 177-451 (885)
92 PF01602 Adaptin_N: Adaptin N 97.6 0.00054 1.2E-08 73.9 12.4 64 381-455 116-179 (526)
93 PF01602 Adaptin_N: Adaptin N 97.6 0.00027 5.8E-09 76.3 10.0 198 382-614 82-281 (526)
94 PF13646 HEAT_2: HEAT repeats; 97.6 0.00037 8E-09 54.6 7.9 87 471-580 1-88 (88)
95 KOG3864 Uncharacterized conser 97.6 7.4E-05 1.6E-09 65.7 4.1 90 126-220 102-191 (221)
96 smart00185 ARM Armadillo/beta- 97.6 0.00022 4.8E-09 46.4 5.3 40 459-498 2-41 (41)
97 KOG1859 Leucine-rich repeat pr 97.5 1.4E-05 3E-10 82.9 -1.1 184 95-291 76-292 (1096)
98 KOG0444 Cytoskeletal regulator 97.5 2.8E-06 6.1E-11 86.3 -6.7 194 81-289 106-302 (1255)
99 KOG2973 Uncharacterized conser 97.5 0.0015 3.3E-08 61.2 11.3 153 430-589 5-166 (353)
100 PF14664 RICTOR_N: Rapamycin-i 97.4 0.011 2.3E-07 59.6 17.9 219 382-617 28-257 (371)
101 COG5369 Uncharacterized conser 97.4 0.0017 3.6E-08 65.3 11.4 206 372-583 465-740 (743)
102 PRK15387 E3 ubiquitin-protein 97.4 0.00012 2.5E-09 80.1 3.4 79 205-293 382-460 (788)
103 PRK15387 E3 ubiquitin-protein 97.3 0.00027 5.9E-09 77.3 4.8 26 442-467 546-571 (788)
104 smart00185 ARM Armadillo/beta- 97.2 0.0008 1.7E-08 43.7 5.2 38 420-457 4-41 (41)
105 KOG0618 Serine/threonine phosp 97.2 6.8E-05 1.5E-09 80.2 -0.1 159 125-299 359-520 (1081)
106 PRK15370 E3 ubiquitin-protein 97.2 0.00031 6.8E-09 77.1 4.7 56 227-291 325-380 (754)
107 TIGR02270 conserved hypothetic 97.2 0.03 6.6E-07 57.1 18.2 117 382-540 89-205 (410)
108 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00082 1.8E-08 47.1 5.0 55 442-496 1-55 (55)
109 PTZ00429 beta-adaptin; Provisi 97.2 0.014 3E-07 64.0 16.6 173 382-579 71-243 (746)
110 KOG1259 Nischarin, modulator o 97.1 0.00021 4.6E-09 66.5 1.3 133 150-295 283-416 (490)
111 KOG0212 Uncharacterized conser 97.0 0.037 7.9E-07 56.4 16.6 187 382-584 253-444 (675)
112 PTZ00429 beta-adaptin; Provisi 97.0 0.025 5.3E-07 62.2 16.6 178 382-584 108-285 (746)
113 PF11841 DUF3361: Domain of un 97.0 0.016 3.6E-07 49.6 12.1 124 462-587 4-134 (160)
114 KOG0472 Leucine-rich repeat pr 97.0 0.0016 3.5E-08 63.4 6.6 92 200-294 430-544 (565)
115 KOG2734 Uncharacterized conser 97.0 0.089 1.9E-06 52.1 18.3 197 377-584 173-400 (536)
116 PF09759 Atx10homo_assoc: Spin 97.0 0.0035 7.7E-08 49.4 7.3 65 444-508 2-70 (102)
117 TIGR02270 conserved hypothetic 97.0 0.017 3.7E-07 58.9 14.1 148 382-582 57-205 (410)
118 COG5369 Uncharacterized conser 97.0 0.0071 1.5E-07 61.0 10.8 149 447-599 408-560 (743)
119 KOG2123 Uncharacterized conser 96.9 0.00026 5.6E-09 65.4 0.6 110 125-248 19-135 (388)
120 PRK15370 E3 ubiquitin-protein 96.9 0.00062 1.3E-08 74.8 3.5 103 179-292 325-429 (754)
121 PF14664 RICTOR_N: Rapamycin-i 96.9 0.044 9.5E-07 55.3 16.1 180 391-582 80-267 (371)
122 KOG1789 Endocytosis protein RM 96.9 0.019 4.2E-07 62.4 13.7 141 444-588 1741-1887(2235)
123 PF12348 CLASP_N: CLASP N term 96.9 0.015 3.2E-07 55.0 12.1 184 389-585 17-207 (228)
124 KOG2739 Leucine-rich acidic nu 96.9 0.00013 2.8E-09 67.1 -2.0 89 204-292 42-130 (260)
125 KOG2123 Uncharacterized conser 96.8 0.00059 1.3E-08 63.1 2.1 101 179-284 19-123 (388)
126 COG1413 FOG: HEAT repeat [Ener 96.8 0.03 6.6E-07 56.4 14.3 152 381-584 45-209 (335)
127 PF10165 Ric8: Guanine nucleot 96.8 0.036 7.7E-07 57.7 14.8 161 422-582 16-216 (446)
128 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0022 4.8E-08 44.9 4.1 55 527-582 1-55 (55)
129 KOG4237 Extracellular matrix p 96.7 0.00039 8.4E-09 67.4 0.3 71 221-294 268-338 (498)
130 PF13855 LRR_8: Leucine rich r 96.6 0.00032 6.9E-09 50.5 -1.0 10 205-214 25-34 (61)
131 COG5231 VMA13 Vacuolar H+-ATPa 96.5 0.085 1.8E-06 50.0 13.9 221 386-617 156-416 (432)
132 smart00367 LRR_CC Leucine-rich 96.4 0.0039 8.3E-08 35.7 3.0 25 226-250 1-25 (26)
133 PF13855 LRR_8: Leucine rich r 96.4 0.00015 3.3E-09 52.2 -3.8 56 205-263 1-59 (61)
134 KOG2023 Nuclear transport rece 96.4 0.073 1.6E-06 55.4 13.3 167 381-561 130-306 (885)
135 smart00367 LRR_CC Leucine-rich 96.3 0.0045 9.8E-08 35.5 2.8 22 179-200 2-23 (26)
136 KOG1789 Endocytosis protein RM 96.3 0.12 2.5E-06 56.8 15.0 143 395-543 1741-1884(2235)
137 PF04063 DUF383: Domain of unk 96.3 0.017 3.7E-07 52.0 7.7 115 395-509 11-143 (192)
138 KOG0281 Beta-TrCP (transducin 96.2 0.0018 3.9E-08 61.2 1.3 73 37-110 72-148 (499)
139 KOG2259 Uncharacterized conser 96.2 0.036 7.8E-07 57.5 10.3 203 384-617 203-463 (823)
140 PF11841 DUF3361: Domain of un 96.2 0.19 4.2E-06 43.3 13.1 117 373-497 5-130 (160)
141 KOG2611 Neurochondrin/leucine- 96.2 0.76 1.7E-05 46.3 18.8 190 383-583 15-224 (698)
142 KOG4413 26S proteasome regulat 96.1 0.11 2.5E-06 49.3 12.3 178 382-564 85-265 (524)
143 KOG1242 Protein containing ada 96.1 0.3 6.5E-06 50.9 16.4 177 389-584 226-444 (569)
144 PF09759 Atx10homo_assoc: Spin 96.1 0.026 5.7E-07 44.6 6.9 66 486-552 3-70 (102)
145 PF12799 LRR_4: Leucine Rich r 96.1 0.0067 1.4E-07 39.9 3.0 37 253-291 1-37 (44)
146 KOG4413 26S proteasome regulat 96.0 0.18 3.8E-06 48.1 13.2 177 431-614 85-269 (524)
147 PF04063 DUF383: Domain of unk 96.0 0.046 1E-06 49.3 9.1 119 440-561 7-154 (192)
148 KOG4308 LRR-containing protein 96.0 0.0039 8.5E-08 64.9 2.6 60 229-289 235-301 (478)
149 KOG1859 Leucine-rich repeat pr 95.9 0.00091 2E-08 70.0 -2.4 107 148-265 184-291 (1096)
150 KOG0617 Ras suppressor protein 95.9 0.00027 5.9E-09 60.3 -5.2 109 178-292 55-164 (264)
151 KOG2997 F-box protein FBX9 [Ge 95.9 0.0047 1E-07 58.1 2.2 44 38-81 105-153 (366)
152 KOG4308 LRR-containing protein 95.8 0.0032 6.9E-08 65.6 1.0 164 127-296 89-280 (478)
153 KOG0212 Uncharacterized conser 95.8 0.12 2.5E-06 53.0 11.7 194 382-588 211-410 (675)
154 KOG0617 Ras suppressor protein 95.8 6.7E-05 1.4E-09 63.9 -9.3 33 124-159 55-87 (264)
155 COG1413 FOG: HEAT repeat [Ener 95.8 0.24 5.3E-06 49.8 14.4 151 382-582 77-240 (335)
156 COG4886 Leucine-rich repeat (L 95.8 0.01 2.2E-07 61.4 4.4 175 103-294 116-293 (394)
157 KOG1062 Vesicle coat complex A 95.6 0.23 5E-06 53.1 13.6 206 381-614 144-399 (866)
158 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.04 8.6E-07 44.8 6.2 68 429-496 44-113 (119)
159 PF05004 IFRD: Interferon-rela 95.5 1.3 2.7E-05 43.7 17.8 193 382-584 46-257 (309)
160 PLN03150 hypothetical protein; 95.5 0.023 5E-07 62.1 6.1 81 207-291 420-503 (623)
161 PRK15386 type III secretion pr 95.5 0.046 1E-06 55.1 7.6 159 99-292 48-214 (426)
162 PF12348 CLASP_N: CLASP N term 95.5 0.031 6.8E-07 52.7 6.3 169 438-617 17-194 (228)
163 KOG4658 Apoptotic ATPase [Sign 95.4 0.018 3.9E-07 64.8 5.1 106 101-215 543-652 (889)
164 COG5096 Vesicle coat complex, 95.4 0.47 1E-05 51.6 15.3 67 511-583 128-194 (757)
165 PF08045 CDC14: Cell division 95.4 0.35 7.6E-06 45.5 12.7 99 443-542 106-207 (257)
166 KOG3036 Protein involved in ce 95.4 1.9 4.1E-05 39.8 16.6 177 396-584 96-291 (293)
167 PF12717 Cnd1: non-SMC mitotic 95.4 0.64 1.4E-05 41.8 14.1 110 392-520 1-111 (178)
168 PF10165 Ric8: Guanine nucleot 95.3 0.3 6.5E-06 50.9 13.3 159 448-610 1-190 (446)
169 KOG1059 Vesicle coat complex A 95.2 0.82 1.8E-05 48.5 15.7 178 380-584 182-365 (877)
170 KOG4658 Apoptotic ATPase [Sign 95.1 0.019 4.1E-07 64.6 4.1 182 105-294 525-733 (889)
171 KOG1242 Protein containing ada 95.0 0.48 1E-05 49.4 13.3 207 382-614 137-347 (569)
172 PF12799 LRR_4: Leucine Rich r 95.0 0.035 7.6E-07 36.5 3.4 13 224-236 21-33 (44)
173 KOG4237 Extracellular matrix p 94.9 0.018 3.9E-07 56.3 2.7 71 101-172 89-161 (498)
174 KOG1517 Guanine nucleotide bin 94.9 0.4 8.6E-06 52.9 12.6 160 423-585 507-672 (1387)
175 KOG2739 Leucine-rich acidic nu 94.8 0.018 3.9E-07 53.3 2.3 19 197-215 83-101 (260)
176 KOG4535 HEAT and armadillo rep 94.8 0.21 4.6E-06 50.1 9.6 191 388-586 358-561 (728)
177 KOG2999 Regulator of Rac1, req 94.7 0.72 1.6E-05 47.3 13.3 157 429-587 84-245 (713)
178 KOG1517 Guanine nucleotide bin 94.7 0.66 1.4E-05 51.3 13.7 197 377-584 509-732 (1387)
179 COG5181 HSH155 U2 snRNP splice 94.6 0.16 3.6E-06 52.4 8.6 143 382-542 607-759 (975)
180 KOG0213 Splicing factor 3b, su 94.6 0.43 9.2E-06 50.6 11.6 195 381-610 885-1081(1172)
181 KOG1059 Vesicle coat complex A 94.6 0.38 8.2E-06 50.9 11.2 105 429-545 145-251 (877)
182 PF11701 UNC45-central: Myosin 94.5 0.16 3.5E-06 44.4 7.5 147 430-582 5-157 (157)
183 PF05004 IFRD: Interferon-rela 94.5 0.72 1.6E-05 45.5 12.8 183 430-617 45-245 (309)
184 KOG1241 Karyopherin (importin) 94.5 3.3 7.2E-05 44.5 17.9 189 382-583 262-476 (859)
185 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.26 5.7E-06 38.9 7.8 69 427-496 26-94 (97)
186 KOG0213 Splicing factor 3b, su 94.4 0.2 4.4E-06 52.9 8.9 146 382-542 802-954 (1172)
187 PF13764 E3_UbLigase_R4: E3 ub 94.4 1.1 2.3E-05 49.8 14.9 191 423-614 112-333 (802)
188 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.2 4.4E-06 39.6 7.0 90 486-582 3-94 (97)
189 KOG1062 Vesicle coat complex A 94.4 1.1 2.4E-05 48.2 14.2 188 380-585 314-545 (866)
190 KOG1241 Karyopherin (importin) 94.3 0.59 1.3E-05 49.9 12.1 158 425-587 357-533 (859)
191 PF14668 RICTOR_V: Rapamycin-i 94.3 0.17 3.7E-06 37.3 6.0 68 486-555 4-71 (73)
192 COG4886 Leucine-rich repeat (L 94.2 0.046 1E-06 56.5 4.1 171 107-294 97-271 (394)
193 PLN03215 ascorbic acid mannose 94.0 0.044 9.6E-07 54.5 3.3 37 39-75 3-40 (373)
194 KOG1061 Vesicle coat complex A 94.0 1.4 3.1E-05 47.3 14.3 141 382-545 52-192 (734)
195 KOG1644 U2-associated snRNP A' 94.0 0.051 1.1E-06 48.3 3.3 82 203-286 62-148 (233)
196 PLN03150 hypothetical protein; 94.0 0.091 2E-06 57.5 5.9 104 127-239 420-527 (623)
197 KOG4151 Myosin assembly protei 93.9 0.21 4.7E-06 53.4 8.3 184 422-616 498-686 (748)
198 COG5096 Vesicle coat complex, 93.9 0.77 1.7E-05 50.0 12.3 139 382-543 58-196 (757)
199 PF12719 Cnd3: Nuclear condens 93.8 1.4 2.9E-05 43.5 13.4 169 382-565 30-208 (298)
200 COG5231 VMA13 Vacuolar H+-ATPa 93.8 1.7 3.8E-05 41.5 12.9 130 474-605 154-285 (432)
201 KOG4535 HEAT and armadillo rep 93.7 0.11 2.4E-06 52.0 5.4 157 424-584 429-603 (728)
202 KOG3036 Protein involved in ce 93.7 4.2 9E-05 37.6 14.6 137 365-508 106-257 (293)
203 PF02985 HEAT: HEAT repeat; I 93.6 0.14 2.9E-06 30.7 3.7 28 430-457 2-29 (31)
204 COG5181 HSH155 U2 snRNP splice 93.6 2 4.3E-05 44.9 13.9 183 381-588 690-874 (975)
205 PF04078 Rcd1: Cell differenti 93.6 1.1 2.4E-05 41.9 11.3 172 398-582 69-260 (262)
206 KOG1644 U2-associated snRNP A' 93.5 0.022 4.8E-07 50.5 0.2 87 205-294 42-129 (233)
207 PF08045 CDC14: Cell division 93.4 0.53 1.2E-05 44.3 9.0 85 526-613 104-189 (257)
208 KOG0531 Protein phosphatase 1, 93.3 0.025 5.4E-07 58.7 0.2 56 178-237 117-172 (414)
209 KOG0531 Protein phosphatase 1, 93.2 0.0085 1.8E-07 62.2 -3.4 175 102-295 94-272 (414)
210 KOG2611 Neurochondrin/leucine- 93.2 4.2 9E-05 41.3 15.1 130 433-564 16-162 (698)
211 PF02985 HEAT: HEAT repeat; I 93.1 0.16 3.4E-06 30.4 3.5 28 471-498 2-29 (31)
212 COG5240 SEC21 Vesicle coat com 93.1 4.1 8.9E-05 42.3 15.1 197 378-584 302-555 (898)
213 PF13516 LRR_6: Leucine Rich r 93.1 0.1 2.2E-06 29.1 2.4 23 178-201 1-23 (24)
214 KOG2259 Uncharacterized conser 93.1 0.74 1.6E-05 48.3 10.1 109 378-503 371-480 (823)
215 PF11698 V-ATPase_H_C: V-ATPas 93.0 0.29 6.3E-06 39.9 5.8 68 471-541 45-114 (119)
216 KOG0472 Leucine-rich repeat pr 92.8 0.07 1.5E-06 52.5 2.3 109 146-266 430-541 (565)
217 KOG4151 Myosin assembly protei 92.5 1.2 2.6E-05 48.0 11.1 174 397-581 560-738 (748)
218 PF08569 Mo25: Mo25-like; Int 92.2 8.7 0.00019 38.2 16.1 199 382-588 79-287 (335)
219 PF14668 RICTOR_V: Rapamycin-i 92.0 0.67 1.4E-05 34.2 6.1 66 396-469 4-70 (73)
220 KOG0301 Phospholipase A2-activ 91.9 5.2 0.00011 42.4 14.4 180 385-576 550-738 (745)
221 COG5240 SEC21 Vesicle coat com 91.9 18 0.0004 37.8 18.9 219 382-617 267-543 (898)
222 PRK15386 type III secretion pr 91.9 0.22 4.8E-06 50.3 4.7 122 147-292 48-170 (426)
223 COG5215 KAP95 Karyopherin (imp 91.6 2.9 6.2E-05 43.4 12.0 216 382-615 97-336 (858)
224 KOG2062 26S proteasome regulat 91.4 3.8 8.3E-05 43.9 13.0 158 431-615 522-680 (929)
225 KOG1824 TATA-binding protein-i 91.2 4.6 9.9E-05 44.6 13.6 188 382-584 820-1036(1233)
226 KOG0567 HEAT repeat-containing 91.2 3.3 7.1E-05 38.7 10.9 58 381-456 69-128 (289)
227 KOG0414 Chromosome condensatio 91.0 4.2 9.1E-05 46.0 13.5 137 381-542 921-1064(1251)
228 PF13516 LRR_6: Leucine Rich r 90.8 0.18 4E-06 28.0 1.7 15 254-268 3-17 (24)
229 PF06371 Drf_GBD: Diaphanous G 90.3 1.3 2.8E-05 40.1 7.9 76 422-497 101-186 (187)
230 KOG1060 Vesicle coat complex A 90.3 6.7 0.00015 42.5 13.6 169 382-583 38-208 (968)
231 PF06371 Drf_GBD: Diaphanous G 90.2 0.98 2.1E-05 40.9 7.0 77 462-541 100-186 (187)
232 PF12717 Cnd1: non-SMC mitotic 89.7 3.1 6.6E-05 37.4 9.7 93 441-543 1-93 (178)
233 PF13764 E3_UbLigase_R4: E3 ub 89.7 38 0.00083 38.0 19.5 53 378-438 116-173 (802)
234 KOG1824 TATA-binding protein-i 88.8 37 0.00081 38.0 17.9 167 431-612 571-746 (1233)
235 KOG1967 DNA repair/transcripti 88.6 4.5 9.8E-05 44.5 11.2 191 382-578 818-1018(1030)
236 KOG3763 mRNA export factor TAP 88.4 0.79 1.7E-05 47.4 5.2 68 172-239 211-282 (585)
237 PF08324 PUL: PUL domain; Int 88.2 0.96 2.1E-05 43.8 5.8 186 382-576 66-266 (268)
238 KOG1077 Vesicle coat complex A 88.0 25 0.00054 37.9 15.6 112 459-583 321-432 (938)
239 KOG1061 Vesicle coat complex A 87.5 3.6 7.9E-05 44.3 9.6 103 382-500 89-191 (734)
240 KOG1077 Vesicle coat complex A 87.5 5 0.00011 42.8 10.4 101 381-497 331-432 (938)
241 PF11701 UNC45-central: Myosin 87.2 3.2 6.9E-05 36.3 7.8 142 383-538 7-155 (157)
242 KOG2025 Chromosome condensatio 86.9 7.4 0.00016 41.7 11.2 105 428-538 85-189 (892)
243 PF04078 Rcd1: Cell differenti 86.9 11 0.00024 35.5 11.4 185 392-586 8-220 (262)
244 KOG1991 Nuclear transport rece 86.8 16 0.00034 40.9 14.0 132 382-520 413-557 (1010)
245 PF12031 DUF3518: Domain of un 86.5 1.6 3.5E-05 40.2 5.6 79 443-521 139-227 (257)
246 PF08569 Mo25: Mo25-like; Int 86.3 6.6 0.00014 39.0 10.3 190 422-616 70-270 (335)
247 KOG1943 Beta-tubulin folding c 86.1 7.8 0.00017 43.6 11.4 156 424-584 337-500 (1133)
248 PF13013 F-box-like_2: F-box-l 85.9 1 2.3E-05 36.2 3.7 30 39-68 21-50 (109)
249 KOG0414 Chromosome condensatio 85.4 12 0.00027 42.5 12.5 140 429-585 920-1065(1251)
250 PF06025 DUF913: Domain of Unk 85.3 47 0.001 33.9 18.3 92 382-480 109-207 (379)
251 KOG0274 Cdc4 and related F-box 85.2 0.42 9.1E-06 50.8 1.5 46 35-80 103-148 (537)
252 KOG1943 Beta-tubulin folding c 85.2 28 0.00061 39.4 15.0 212 381-614 343-596 (1133)
253 PF12719 Cnd3: Nuclear condens 85.0 23 0.0005 34.8 13.6 109 428-544 26-145 (298)
254 KOG0915 Uncharacterized conser 85.0 11 0.00023 44.2 12.0 173 429-611 999-1183(1702)
255 KOG2999 Regulator of Rac1, req 84.4 5.2 0.00011 41.4 8.5 143 471-616 85-229 (713)
256 KOG4579 Leucine-rich repeat (L 84.1 0.85 1.9E-05 38.2 2.4 38 251-290 75-112 (177)
257 COG5218 YCG1 Chromosome conden 83.3 17 0.00036 38.2 11.6 119 470-598 92-210 (885)
258 smart00368 LRR_RI Leucine rich 83.1 1.6 3.5E-05 25.3 2.8 18 254-271 3-20 (28)
259 KOG0567 HEAT repeat-containing 83.0 43 0.00093 31.7 13.2 92 471-584 189-280 (289)
260 COG5116 RPN2 26S proteasome re 82.8 10 0.00023 39.4 9.9 125 469-614 551-676 (926)
261 smart00368 LRR_RI Leucine rich 82.7 1.8 3.8E-05 25.1 2.8 24 227-251 2-25 (28)
262 PF11707 Npa1: Ribosome 60S bi 82.4 56 0.0012 32.6 15.4 155 430-587 58-240 (330)
263 PF12460 MMS19_C: RNAPII trans 81.9 38 0.00082 35.2 14.3 183 382-586 192-396 (415)
264 cd03568 VHS_STAM VHS domain fa 81.2 12 0.00025 32.2 8.4 70 382-457 40-110 (144)
265 PF12031 DUF3518: Domain of un 81.1 5.9 0.00013 36.6 6.8 83 484-566 139-228 (257)
266 KOG1240 Protein kinase contain 80.7 20 0.00044 41.1 11.8 106 382-498 425-537 (1431)
267 KOG4653 Uncharacterized conser 80.4 38 0.00083 37.5 13.4 187 385-583 733-963 (982)
268 KOG2062 26S proteasome regulat 79.7 30 0.00064 37.6 12.1 121 428-567 554-678 (929)
269 PF12530 DUF3730: Protein of u 79.3 57 0.0012 30.7 13.6 139 431-584 3-151 (234)
270 KOG1060 Vesicle coat complex A 79.3 1.1E+02 0.0023 33.9 17.4 173 382-585 74-247 (968)
271 KOG1240 Protein kinase contain 79.3 15 0.00032 42.1 10.3 137 435-584 585-725 (1431)
272 KOG1248 Uncharacterized conser 78.3 49 0.0011 38.1 13.9 201 389-611 664-880 (1176)
273 KOG2274 Predicted importin 9 [ 78.3 26 0.00056 38.9 11.5 157 427-584 529-689 (1005)
274 PF12460 MMS19_C: RNAPII trans 78.1 36 0.00078 35.3 12.6 116 382-500 274-396 (415)
275 cd03569 VHS_Hrs_Vps27p VHS dom 78.1 17 0.00037 31.1 8.5 70 382-457 44-114 (142)
276 KOG1832 HIV-1 Vpr-binding prot 78.0 7.7 0.00017 42.6 7.5 163 422-584 595-824 (1516)
277 KOG2032 Uncharacterized conser 77.3 23 0.0005 36.5 10.2 152 426-584 252-415 (533)
278 PF14225 MOR2-PAG1_C: Cell mor 77.2 70 0.0015 30.7 20.3 208 383-612 11-240 (262)
279 PF06685 DUF1186: Protein of u 76.8 69 0.0015 30.4 14.7 115 427-565 30-165 (249)
280 PF08167 RIX1: rRNA processing 76.1 13 0.00028 32.8 7.5 107 429-541 26-142 (165)
281 KOG1949 Uncharacterized conser 75.9 23 0.0005 38.1 10.1 144 431-583 177-330 (1005)
282 cd03567 VHS_GGA VHS domain fam 75.8 23 0.00049 30.2 8.5 70 382-457 41-116 (139)
283 cd03568 VHS_STAM VHS domain fa 75.8 13 0.00028 31.9 7.1 72 428-499 37-111 (144)
284 KOG2025 Chromosome condensatio 75.6 22 0.00048 38.3 9.9 111 470-590 86-196 (892)
285 COG5218 YCG1 Chromosome conden 75.2 15 0.00032 38.6 8.4 109 427-544 90-198 (885)
286 PF06025 DUF913: Domain of Unk 74.5 1.1E+02 0.0023 31.4 14.7 129 423-552 100-243 (379)
287 KOG2137 Protein kinase [Signal 73.9 53 0.0011 35.7 12.3 130 470-611 390-519 (700)
288 COG5215 KAP95 Karyopherin (imp 73.9 26 0.00056 36.8 9.6 121 393-521 570-691 (858)
289 KOG4653 Uncharacterized conser 73.5 24 0.00052 38.9 9.7 147 436-584 735-918 (982)
290 KOG1078 Vesicle coat complex C 73.2 1.5E+02 0.0033 32.7 17.5 64 382-457 248-311 (865)
291 KOG4579 Leucine-rich repeat (L 73.1 1.6 3.5E-05 36.6 0.9 81 179-265 53-135 (177)
292 PF14726 RTTN_N: Rotatin, an a 73.0 20 0.00044 28.3 7.0 68 426-493 28-95 (98)
293 COG5209 RCD1 Uncharacterized p 72.1 21 0.00045 32.7 7.5 144 397-550 118-276 (315)
294 PF05918 API5: Apoptosis inhib 72.1 13 0.00029 39.4 7.5 97 382-496 26-123 (556)
295 PF10363 DUF2435: Protein of u 71.9 8.3 0.00018 30.1 4.6 69 430-499 5-73 (92)
296 PF08324 PUL: PUL domain; Int 71.7 13 0.00027 36.0 7.0 155 430-585 65-232 (268)
297 KOG1248 Uncharacterized conser 71.2 80 0.0017 36.5 13.3 185 386-584 704-898 (1176)
298 PF09372 PRANC: PRANC domain; 71.0 4 8.6E-05 32.3 2.7 26 38-63 70-95 (97)
299 COG5209 RCD1 Uncharacterized p 70.8 19 0.00041 32.9 7.0 139 445-586 117-270 (315)
300 PF14500 MMS19_N: Dos2-interac 69.9 37 0.0008 32.6 9.5 144 432-584 3-153 (262)
301 KOG2274 Predicted importin 9 [ 69.9 96 0.0021 34.8 13.2 182 390-584 461-646 (1005)
302 KOG2137 Protein kinase [Signal 69.4 32 0.0007 37.2 9.6 134 425-566 386-520 (700)
303 cd03569 VHS_Hrs_Vps27p VHS dom 69.3 23 0.0005 30.3 7.2 71 428-498 41-114 (142)
304 cd03567 VHS_GGA VHS domain fam 69.3 25 0.00053 30.0 7.3 69 429-497 39-115 (139)
305 cd03561 VHS VHS domain family; 69.1 42 0.00091 28.3 8.7 70 382-457 40-112 (133)
306 PF13504 LRR_7: Leucine rich r 68.8 4.5 9.8E-05 20.3 1.7 12 278-289 1-12 (17)
307 KOG2933 Uncharacterized conser 68.8 82 0.0018 30.6 11.1 140 430-582 90-232 (334)
308 smart00288 VHS Domain present 68.3 39 0.00084 28.5 8.3 70 382-457 40-111 (133)
309 PF11791 Aconitase_B_N: Aconit 68.3 4.4 9.5E-05 34.4 2.5 32 468-499 91-124 (154)
310 PF05918 API5: Apoptosis inhib 68.0 28 0.0006 37.1 8.7 69 377-457 57-125 (556)
311 KOG1020 Sister chromatid cohes 67.4 82 0.0018 37.5 12.6 143 428-587 816-963 (1692)
312 cd03561 VHS VHS domain family; 67.1 30 0.00065 29.2 7.4 71 429-499 38-113 (133)
313 KOG1020 Sister chromatid cohes 67.0 83 0.0018 37.4 12.6 103 382-499 819-922 (1692)
314 COG5116 RPN2 26S proteasome re 66.8 85 0.0018 33.2 11.5 139 427-584 550-692 (926)
315 PF11865 DUF3385: Domain of un 66.2 74 0.0016 27.8 9.9 143 428-583 10-156 (160)
316 KOG0211 Protein phosphatase 2A 65.2 1.2E+02 0.0026 33.9 13.3 209 382-617 440-652 (759)
317 KOG1566 Conserved protein Mo25 64.9 1.4E+02 0.0031 29.1 17.3 225 377-611 76-311 (342)
318 KOG1967 DNA repair/transcripti 64.8 18 0.00039 40.2 6.7 178 431-617 818-1012(1030)
319 KOG0211 Protein phosphatase 2A 64.6 62 0.0013 36.1 10.9 178 428-616 237-414 (759)
320 PF07723 LRR_2: Leucine Rich R 64.3 5.6 0.00012 22.6 1.7 25 127-151 2-26 (26)
321 KOG1832 HIV-1 Vpr-binding prot 64.0 24 0.00053 39.0 7.4 107 392-512 675-787 (1516)
322 PF11707 Npa1: Ribosome 60S bi 64.0 1.6E+02 0.0035 29.4 18.9 159 381-545 58-240 (330)
323 KOG1058 Vesicle coat complex C 63.9 89 0.0019 34.3 11.4 30 471-500 245-274 (948)
324 PF10521 DUF2454: Protein of u 63.8 90 0.002 30.4 11.1 70 428-497 119-202 (282)
325 KOG1991 Nuclear transport rece 63.4 2E+02 0.0044 32.7 14.3 191 384-585 467-672 (1010)
326 KOG3763 mRNA export factor TAP 62.5 12 0.00026 39.1 4.8 20 170-189 235-254 (585)
327 KOG2956 CLIP-associating prote 62.5 2E+02 0.0043 29.9 15.1 173 391-584 299-477 (516)
328 smart00288 VHS Domain present 60.8 42 0.0009 28.3 7.1 70 429-498 38-111 (133)
329 PF04564 U-box: U-box domain; 60.8 0.8 1.7E-05 34.0 -2.9 32 287-320 6-37 (73)
330 PF10363 DUF2435: Protein of u 60.1 47 0.001 25.9 6.7 85 513-613 6-90 (92)
331 PF13251 DUF4042: Domain of un 59.7 1.3E+02 0.0029 26.9 11.5 145 395-544 2-176 (182)
332 COG5098 Chromosome condensatio 58.4 63 0.0014 35.0 9.1 153 426-584 238-415 (1128)
333 KOG1820 Microtubule-associated 57.0 86 0.0019 35.4 10.5 171 433-617 258-431 (815)
334 PF13251 DUF4042: Domain of un 56.7 1.5E+02 0.0032 26.6 11.2 140 444-587 2-177 (182)
335 smart00638 LPD_N Lipoprotein N 56.5 1.3E+02 0.0029 32.7 12.1 137 429-582 394-543 (574)
336 PF14225 MOR2-PAG1_C: Cell mor 56.4 1.9E+02 0.0041 27.7 13.2 179 382-584 67-254 (262)
337 PF00790 VHS: VHS domain; Int 55.5 65 0.0014 27.4 7.5 70 382-457 45-118 (140)
338 KOG2032 Uncharacterized conser 55.3 71 0.0015 33.1 8.6 106 509-617 253-359 (533)
339 KOG0915 Uncharacterized conser 55.2 1.4E+02 0.003 35.7 11.8 109 471-584 1000-1113(1702)
340 KOG1243 Protein kinase [Genera 54.9 16 0.00034 39.4 4.2 147 425-584 327-476 (690)
341 PF08216 CTNNBL: Catenin-beta- 53.8 16 0.00034 29.3 3.1 43 445-487 63-105 (108)
342 KOG1078 Vesicle coat complex C 53.4 3.6E+02 0.0078 30.0 16.3 53 525-583 478-531 (865)
343 cd08050 TAF6 TATA Binding Prot 53.3 69 0.0015 32.2 8.4 111 429-540 211-338 (343)
344 PF06012 DUF908: Domain of Unk 53.2 74 0.0016 31.8 8.6 66 486-551 239-306 (329)
345 KOG1820 Microtubule-associated 52.0 4E+02 0.0086 30.4 14.5 183 382-584 256-443 (815)
346 KOG2956 CLIP-associating prote 51.9 3E+02 0.0064 28.6 13.4 139 382-541 332-476 (516)
347 PF04821 TIMELESS: Timeless pr 51.6 1.9E+02 0.0041 27.8 10.9 149 420-584 32-208 (266)
348 COG5656 SXM1 Importin, protein 50.6 97 0.0021 34.0 9.0 85 422-508 454-538 (970)
349 PF12231 Rif1_N: Rap1-interact 50.2 2.9E+02 0.0064 28.1 15.3 180 390-583 4-203 (372)
350 PF14663 RasGEF_N_2: Rapamycin 49.8 56 0.0012 26.7 6.0 40 429-468 9-48 (115)
351 PF07814 WAPL: Wings apart-lik 49.4 83 0.0018 31.9 8.4 92 513-610 24-116 (361)
352 PF12726 SEN1_N: SEN1 N termin 49.3 2.4E+02 0.0051 31.9 12.8 153 382-544 444-610 (727)
353 PF12830 Nipped-B_C: Sister ch 48.7 2E+02 0.0044 25.8 12.6 147 429-585 9-168 (187)
354 KOG1058 Vesicle coat complex C 48.3 4.3E+02 0.0093 29.4 13.7 102 382-500 246-348 (948)
355 PF07814 WAPL: Wings apart-lik 47.3 1.1E+02 0.0025 30.9 9.0 93 471-564 23-116 (361)
356 COG5098 Chromosome condensatio 45.6 3.5E+02 0.0076 29.7 12.0 107 382-497 302-414 (1128)
357 PF04821 TIMELESS: Timeless pr 45.2 2.7E+02 0.0058 26.8 10.8 107 505-612 35-190 (266)
358 KOG4464 Signaling protein RIC- 44.5 2.2E+02 0.0047 29.0 9.8 160 430-589 47-236 (532)
359 PF08167 RIX1: rRNA processing 43.9 2.2E+02 0.0049 24.9 9.8 110 471-584 27-143 (165)
360 KOG3926 F-box proteins [Amino 43.8 13 0.00029 34.8 1.5 47 37-83 199-246 (332)
361 PF10521 DUF2454: Protein of u 43.5 2.7E+02 0.0059 27.0 10.7 73 470-542 120-203 (282)
362 PF00790 VHS: VHS domain; Int 43.3 69 0.0015 27.3 5.8 69 429-497 43-117 (140)
363 PF12530 DUF3730: Protein of u 41.9 3E+02 0.0065 25.8 14.5 99 382-497 41-150 (234)
364 PF11865 DUF3385: Domain of un 41.2 2.4E+02 0.0053 24.6 9.3 30 382-411 13-43 (160)
365 PLN03205 ATR interacting prote 41.0 89 0.0019 31.4 6.6 111 471-582 325-444 (652)
366 PF01347 Vitellogenin_N: Lipop 40.7 80 0.0017 34.8 7.4 136 429-581 432-586 (618)
367 PF08506 Cse1: Cse1; InterPro 40.6 2.5E+02 0.0053 28.6 10.1 121 484-614 226-360 (370)
368 PF00560 LRR_1: Leucine Rich R 40.4 12 0.00026 20.1 0.5 9 280-288 2-10 (22)
369 PF14663 RasGEF_N_2: Rapamycin 40.2 47 0.001 27.2 4.1 39 470-508 9-47 (115)
370 KOG0301 Phospholipase A2-activ 38.5 4.3E+02 0.0094 28.8 11.4 167 433-610 549-726 (745)
371 PF01347 Vitellogenin_N: Lipop 37.7 5.9E+02 0.013 28.0 15.4 168 382-576 434-614 (618)
372 PF08216 CTNNBL: Catenin-beta- 37.3 49 0.0011 26.6 3.6 35 486-520 63-97 (108)
373 KOG0532 Leucine-rich repeat (L 37.1 5.7 0.00012 41.6 -2.1 106 181-295 145-251 (722)
374 cd03565 VHS_Tom1 VHS domain fa 37.0 2.6E+02 0.0057 23.8 8.9 70 382-457 41-115 (141)
375 KOG1087 Cytosolic sorting prot 35.8 1.1E+02 0.0024 32.0 6.8 86 358-454 22-109 (470)
376 smart00638 LPD_N Lipoprotein N 35.3 2E+02 0.0043 31.4 9.3 104 471-584 395-509 (574)
377 PF14726 RTTN_N: Rotatin, an a 35.0 2.3E+02 0.005 22.4 7.7 64 471-537 32-95 (98)
378 PF06012 DUF908: Domain of Unk 34.5 1.8E+02 0.0039 29.0 8.1 63 444-506 238-305 (329)
379 KOG4464 Signaling protein RIC- 33.9 5.4E+02 0.012 26.4 15.1 156 382-545 48-234 (532)
380 PF08389 Xpo1: Exportin 1-like 33.4 2.9E+02 0.0063 23.2 8.8 125 395-537 4-148 (148)
381 KOG0532 Leucine-rich repeat (L 33.1 25 0.00054 37.1 1.7 103 123-237 164-270 (722)
382 cd03565 VHS_Tom1 VHS domain fa 32.7 2.7E+02 0.0058 23.7 7.7 70 429-498 39-115 (141)
383 KOG2933 Uncharacterized conser 32.0 2.6E+02 0.0057 27.3 8.1 101 476-584 95-199 (334)
384 PF03130 HEAT_PBS: PBS lyase H 32.0 43 0.00093 19.0 1.9 26 485-520 1-26 (27)
385 PF13306 LRR_5: Leucine rich r 30.9 9.5 0.00021 31.7 -1.5 100 177-287 10-112 (129)
386 PF04388 Hamartin: Hamartin pr 30.9 7.9E+02 0.017 27.4 13.7 133 429-583 5-139 (668)
387 PF12830 Nipped-B_C: Sister ch 30.5 4E+02 0.0087 23.9 13.8 144 382-542 11-167 (187)
388 PF04064 DUF384: Domain of unk 29.7 1.6E+02 0.0035 20.7 4.7 49 537-585 2-50 (58)
389 smart00369 LRR_TYP Leucine-ric 29.4 45 0.00097 18.5 1.7 10 279-288 3-12 (26)
390 smart00370 LRR Leucine-rich re 29.4 45 0.00097 18.5 1.7 10 279-288 3-12 (26)
391 PF10274 ParcG: Parkin co-regu 28.4 2.3E+02 0.005 25.4 6.7 73 427-499 37-110 (183)
392 KOG2676 Uncharacterized conser 27.8 60 0.0013 32.0 3.1 62 447-508 375-440 (478)
393 PHA03100 ankyrin repeat protei 27.2 50 0.0011 35.0 2.9 30 38-67 446-475 (480)
394 KOG4231 Intracellular membrane 27.0 79 0.0017 32.8 3.9 60 523-583 338-398 (763)
395 KOG3735 Tropomodulin and leiom 26.7 1.4E+02 0.0031 29.4 5.4 84 193-277 186-279 (353)
396 PF12726 SEN1_N: SEN1 N termin 26.7 6.7E+02 0.015 28.3 11.8 113 428-547 441-557 (727)
397 PF14666 RICTOR_M: Rapamycin-i 26.2 5.4E+02 0.012 24.0 14.7 129 441-583 77-224 (226)
398 PF04499 SAPS: SIT4 phosphatas 25.9 2.2E+02 0.0047 30.1 7.2 69 509-584 20-92 (475)
399 PF08389 Xpo1: Exportin 1-like 25.9 1.8E+02 0.0039 24.5 5.8 108 382-493 29-148 (148)
400 PF07571 DUF1546: Protein of u 24.5 1.3E+02 0.0029 23.4 4.1 58 482-540 19-76 (92)
401 KOG3735 Tropomodulin and leiom 24.5 1.3E+02 0.0029 29.6 4.8 80 140-223 187-272 (353)
402 TIGR00117 acnB aconitate hydra 24.0 3.6E+02 0.0079 30.5 8.5 31 468-498 94-126 (844)
403 cd08050 TAF6 TATA Binding Prot 24.0 7.5E+02 0.016 24.9 10.9 101 482-582 230-338 (343)
404 KOG4231 Intracellular membrane 24.0 56 0.0012 33.8 2.3 61 478-541 337-398 (763)
405 PF07923 N1221: N1221-like pro 23.3 1.4E+02 0.0029 29.3 4.8 57 424-480 56-127 (293)
406 PF01365 RYDR_ITPR: RIH domain 22.9 2.3E+02 0.0049 26.0 6.1 103 502-611 35-153 (207)
407 PHA02989 ankyrin repeat protei 22.3 79 0.0017 33.7 3.3 28 38-65 457-484 (494)
408 KOG2199 Signal transducing ada 21.9 3.1E+02 0.0067 27.7 6.7 70 428-497 45-117 (462)
409 PHA02875 ankyrin repeat protei 21.8 51 0.0011 34.1 1.7 26 37-62 384-409 (413)
410 smart00567 EZ_HEAT E-Z type HE 21.7 1.3E+02 0.0029 17.2 2.8 28 570-611 2-29 (30)
411 KOG2502 Tub family proteins [G 20.9 63 0.0014 31.8 1.9 47 38-84 43-101 (355)
412 KOG2029 Uncharacterized conser 20.8 3.5E+02 0.0075 29.2 7.2 91 491-582 272-362 (697)
413 KOG2549 Transcription initiati 20.7 1E+03 0.022 25.5 10.4 146 377-540 203-368 (576)
414 PF07539 DRIM: Down-regulated 20.3 2E+02 0.0043 24.6 4.6 24 382-405 20-43 (141)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=209.64 Aligned_cols=243 Identities=26% Similarity=0.458 Sum_probs=172.5
Q ss_pred CCCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHH---------------------
Q 007131 35 NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIA--------------------- 93 (617)
Q Consensus 35 ~~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~--------------------- 93 (617)
.+...|..||||++..||+.|+.+++++++.|||+|++++.+.++|+++|+....+.+.
T Consensus 93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~ 172 (419)
T KOG2120|consen 93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD 172 (419)
T ss_pred CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence 34456999999999999999999999999999999999999999998888765433332
Q ss_pred ----------------------------HHHHHHHhCCCceEEEecCCCCccHHHHh--cCCCccEEeccCCCCCCHHHH
Q 007131 94 ----------------------------MAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATL 143 (617)
Q Consensus 94 ----------------------------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l 143 (617)
.+..+...|..|+.|.+.|....+.+..- ...+|+.|+++.|++++..++
T Consensus 173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH
Confidence 33344555566666666666666554432 667788888888887888888
Q ss_pred HHHHhcCCCcceEEEcCCCCCCCCHHHHHH-HHhcCCCCCeeeccCccC-CcHHHHHHHHhcCCCCceEeecCCCCCCHH
Q 007131 144 SVIVARHEALESLQLGPDFCERITSDAVKA-IALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDCLNVDEV 221 (617)
Q Consensus 144 ~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 221 (617)
..+..+|..|..|+|+ ||.-.++. +.. ++.--++|+.|+|+||.. +.++.+..+.+.||+|.+||+++|..+++.
T Consensus 253 ~ll~~scs~L~~LNls--Wc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLS--WCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHHHhhhhHhhcCch--Hhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 8888888888888884 67655555 333 334446788888887753 455567777777888888888887777775
Q ss_pred HH---hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 222 AL---GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 222 ~l---~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+ ..++-|++|+++.|..+....+.++ ...|.|.+|++.++ +++.++..+...+++|+.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~-vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC-VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc-cCchHHHHHHHhCccccc
Confidence 43 5677788888888877776665554 34677888887775 334444445555666643
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=7.1e-27 Score=221.17 Aligned_cols=266 Identities=24% Similarity=0.343 Sum_probs=232.7
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCC--CCCHHHHHHHHHhCC-CceEEEecCCC
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAH--KCDIAMAASLASRCM-NLQKLRFRGAE 114 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~--~~~~~~~~~l~~~~~-~L~~L~l~~~~ 114 (617)
..--.||+|++..||++|+.+.+.+++++|+.|...+.+...|+++|+..+ .++..++..+.++|. .|+.|.++||.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence 345569999999999999999999999999999999999999999999874 456678888888887 59999999996
Q ss_pred Ccc----HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCcc
Q 007131 115 SAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIR 190 (617)
Q Consensus 115 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 190 (617)
... ......|+++++|.+.+|..+||..+..+.++|++|++|++. .|..+++..++.++..|++|++|+++-|.
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 542 233448999999999999999999999999999999999996 48999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc-CCC
Q 007131 191 DICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR-TDV 265 (617)
Q Consensus 191 ~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~-~~~ 265 (617)
.++..+++.+.+.|..++.+...||...+++.+ .++..+.++++..|..++|.++..+..+|..|+.|+.++ +++
T Consensus 228 qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 228 QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC
Confidence 999999999999999999998889988888776 456778888888998899999988888999999999988 568
Q ss_pred CHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHhhcCc
Q 007131 266 GPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGK 305 (617)
Q Consensus 266 ~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 305 (617)
++..+..+..++++|+++.++.|...++.++.++...+.+
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 8899999999999999999999999999888877655433
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.4e-23 Score=190.33 Aligned_cols=227 Identities=28% Similarity=0.307 Sum_probs=205.3
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
++..|. ..+.++-++++..+|.++..+|.|++... ++ |+.++.+|++|.||.+++++++++|..++.++.+
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-En-------Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisn 234 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-EN-------RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISN 234 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hh-------hhhhhccCCchhhhhhhccCChhHHHHHHHHhhh
Confidence 355555 78888778999999999999999996543 33 3789999999999999999999999999999999
Q ss_pred hccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++.+..+|..+++.+ .|+.|+.++.++++.++-.|..+|.||+.+.+++..+++.|++|.++++++ ++.-+...+
T Consensus 235 IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llq---s~~~plila 311 (550)
T KOG4224|consen 235 IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQ---SPMGPLILA 311 (550)
T ss_pred hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHh---CcchhHHHH
Confidence 999999999999988 699999999999999999999999999999999999999999999999995 467788889
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...|+.|++.++-+...|+++|++.+|+++|+-+++++++-+|..+|+||+..++. +..++.+.|++|++++++.+.
T Consensus 312 sVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~---n~~~i~esgAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 312 SVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH---NVSVIRESGAIPKLIELLLDG 388 (550)
T ss_pred HHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh---hhHHHhhcCchHHHHHHHhcC
Confidence 99999999999999999999999999999999988889999999999999985444 677888999999999998876
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
.-.|
T Consensus 389 pvsv 392 (550)
T KOG4224|consen 389 PVSV 392 (550)
T ss_pred ChhH
Confidence 6554
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-21 Score=181.35 Aligned_cols=227 Identities=24% Similarity=0.297 Sum_probs=204.4
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
+...++|.|++++++.+.++|..++.++.+++.. ..+|+.+++.+ .++.|+.+..+++++++-.|.-+|+
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd--------~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--------RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhh--------HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 3445569999999999999999999999998643 34456788777 9999999999999999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
|++.+.+....|++.|++|.++++|+++.-....+.+.++.|++..+-|-.-|++.|.+.+|+.+|. ..++++++..|
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~--~~dnEeiqchA 354 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR--AGDNEEIQCHA 354 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHh--cCCchhhhhhH
Confidence 9999999999999999999999999888777777888899999999999999999999999999997 46778899999
Q ss_pred HHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..+||||+. ...++..|.+.|+++.+.+++.+++ -.+++...+++..|+. +...+..+.+.|.++.|+.+..+.
T Consensus 355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqseisac~a~Lal----~d~~k~~lld~gi~~iLIp~t~s~ 429 (550)
T KOG4224|consen 355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEISACIAQLAL----NDNDKEALLDSGIIPILIPWTGSE 429 (550)
T ss_pred HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHHHHHHHHHh----ccccHHHHhhcCCcceeecccCcc
Confidence 999999996 6778999999999999999999886 8999999999999998 333678888999999999999999
Q ss_pred CCCCC
Q 007131 613 HEGVR 617 (617)
Q Consensus 613 ~~~vr 617 (617)
+++||
T Consensus 430 s~Ev~ 434 (550)
T KOG4224|consen 430 SEEVR 434 (550)
T ss_pred chhhc
Confidence 98886
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=9e-20 Score=208.22 Aligned_cols=222 Identities=30% Similarity=0.310 Sum_probs=190.6
Q ss_pred cCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 379 QGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 379 ~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.|+ |.|+.+|.+++..+|.+|+.+|.+|+.. +++ +..+...|++++|+++|++++++.++.|+++|.+|+.
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~n-------k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~ 128 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDL-------RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSS 128 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHH-------HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHc
Confidence 555 9999999999999999999999999654 333 3678899999999999999999999999999999999
Q ss_pred c---hhhHH-HHHHhCCHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCcchH-HHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 458 N---AKVAK-AVAEEGGINILAVLARSMN---RLVAEEAAGGLWNLSVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 458 ~---~~~~~-~i~~~~~i~~L~~lL~~~~---~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
+ ++++. .++..|+||.|+++|++.+ ..+++.|+.+|.||+..++++ ..+++.|++|.++.+|. ++++.+
T Consensus 129 ~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs---S~d~~l 205 (2102)
T PLN03200 129 GGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS---SGNSDA 205 (2102)
T ss_pred CcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc---CCCHHH
Confidence 6 44453 4567999999999999863 346788899999999988877 45689999999999995 578899
Q ss_pred HHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHH
Q 007131 530 LERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (617)
Q Consensus 530 ~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~l 608 (617)
+.+|+++|.+++.. ++.+..+++.|+++.|+++++++++..++++|+++|.|||.+++. ....+++.|+++.|+++
T Consensus 206 Q~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e---~r~~Iv~aGgIp~LI~l 282 (2102)
T PLN03200 206 QANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE---AKQAIADAGGIPALINA 282 (2102)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHH
Confidence 99999999999865 568999999999999999998766579999999999999985433 67788899999999999
Q ss_pred hcCCCC
Q 007131 609 TRSPHE 614 (617)
Q Consensus 609 l~~~~~ 614 (617)
+.++++
T Consensus 283 L~sp~~ 288 (2102)
T PLN03200 283 TVAPSK 288 (2102)
T ss_pred HhCcch
Confidence 987654
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.8e-20 Score=186.50 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=192.3
Q ss_pred ccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHH
Q 007131 370 QGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSE 447 (617)
Q Consensus 370 ~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 447 (617)
++....+.. |+ +.+|+.|. ..++.+|..|+|+|.|+|+...+.- +.++++|++|.+++++.+++.++++.
T Consensus 100 ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-------~~vv~agavp~fi~Ll~s~~~~v~eQ 171 (514)
T KOG0166|consen 100 PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-------KVVVDAGAVPIFIQLLSSPSADVREQ 171 (514)
T ss_pred CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-------cccccCCchHHHHHHhcCCcHHHHHH
Confidence 445554444 66 99999996 5669999999999999998876653 57899999999999999999999999
Q ss_pred HHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh-------------------------------------------cCCH
Q 007131 448 AAKAIANLSVN-AKVAKAVAEEGGINILAVLAR-------------------------------------------SMNR 483 (617)
Q Consensus 448 a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~-------------------------------------------~~~~ 483 (617)
|+|+|+|++.+ +..|..+.+.|++++|+.++. +.++
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 99999999995 557888888888887776665 4556
Q ss_pred HHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHH
Q 007131 484 LVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVM 561 (617)
Q Consensus 484 ~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ 561 (617)
++...|+|||..|+.++ +.-+.+++.|+++.|+++|. ..+..++..|+.++.|++.+.+. ...++..|+++.|..
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ 328 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSN 328 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHH
Confidence 67778888888888544 66777788999999999995 46668889999999999876555 677789999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 562 LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 562 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
++...+.+.++..|||++.|+++. +......++++|.+|.|+++++...-+
T Consensus 329 ll~~s~~~~ikkEAcW~iSNItAG---~~~qiqaVida~l~p~Li~~l~~~ef~ 379 (514)
T KOG0166|consen 329 LLSSSPKESIKKEACWTISNITAG---NQEQIQAVIDANLIPVLINLLQTAEFD 379 (514)
T ss_pred HhccCcchhHHHHHHHHHHHhhcC---CHHHHHHHHHcccHHHHHHHHhccchH
Confidence 998655577999999999999983 333677788999999999999886544
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=4.7e-20 Score=210.51 Aligned_cols=234 Identities=25% Similarity=0.261 Sum_probs=193.1
Q ss_pred ccchHHHHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHH
Q 007131 370 QGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (617)
Q Consensus 370 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 449 (617)
.....+....+++.|+++|.+++++.|..|+++|.+++...+++ +..+.+.|++|.|+++|.++++++++.|+
T Consensus 437 e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden-------r~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 437 GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES-------KWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 33334334446699999999999999999999999998765554 36889999999999999999999999999
Q ss_pred HHHHHhccchhhHHH-HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--------------------------
Q 007131 450 KAIANLSVNAKVAKA-VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-------------------------- 502 (617)
Q Consensus 450 ~~L~~ls~~~~~~~~-i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-------------------------- 502 (617)
++|.|++.++++... +.+.|++++|+++|++.++++++.|+++|.||+...+.
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999997765544 55789999999999999999999999999999643211
Q ss_pred -----------HHH-HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCch
Q 007131 503 -----------KGA-IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFE 569 (617)
Q Consensus 503 -----------~~~-i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~ 569 (617)
+.. ....|+++.|++++. ++++..++.|+++|+|++... +....++..|++++++.++.+++ .
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~ 665 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT-E 665 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-h
Confidence 111 123689999999995 578899999999999999654 45788999999999999999886 8
Q ss_pred hHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++..|+++|.+++.... ..+...+++.|++++|++++.+++.++
T Consensus 666 ~v~keAA~AL~nL~~~~~--~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 666 AVATQSARALAALSRSIK--ENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHHHHHHHHHHhCCC--HHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 999999999999997432 234455578999999999999887654
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.4e-20 Score=182.19 Aligned_cols=224 Identities=24% Similarity=0.265 Sum_probs=189.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~~ 459 (617)
+.++.++.+++++.+..+...++.|.+.... ..+ ..++..|.++.+|+.|... ++.++..|+|+|.|+|. +.
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi-----~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts 142 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPI-----DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS 142 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCH-----HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCch
Confidence 7788888899999999999999998665544 444 5677779999999999755 69999999999999999 55
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+....+++.|++|.++.++.++++.+++.|+|||+|++.++ ..|..++..|++++|+.++.. +....+.++++|+|.
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTLS 220 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999765 788888899999999999974 223479999999999
Q ss_pred HhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 539 NLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 539 ~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
|||.+... ...-.-...++.|..++++.+ +.+...|+|+|.+|+..+.. ...++++.|+++.|+++|.+....|+
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne---~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGSNE---KIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChH---HHHHHHHccchHHHHHHHcCCCcccc
Confidence 99987643 332233468899999999986 89999999999999875544 56778899999999999999876553
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.82 E-value=1.2e-19 Score=166.81 Aligned_cols=237 Identities=23% Similarity=0.260 Sum_probs=195.4
Q ss_pred hhccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC
Q 007131 364 TAESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR 441 (617)
Q Consensus 364 l~~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 441 (617)
++....++.+.. ..+|+ |.++++|. ....-.+..|+|+|.|+++.....- +.+++.|++|.++.+|.+++
T Consensus 99 LS~E~~PPIq~V-IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-------kvVvd~~AVPlfiqlL~s~~ 170 (526)
T COG5064 99 LSKETSPPIQPV-IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-------KVVVDAGAVPLFIQLLSSTE 170 (526)
T ss_pred hccccCCCchhH-HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-------EEEEeCCchHHHHHHHcCch
Confidence 444455555553 46666 99999995 4555678999999999987765443 35789999999999999999
Q ss_pred HHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCH--HHHHHHHHHHHHhcCCcc---hHHHHHhcCChHHH
Q 007131 442 EGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNR--LVAEEAAGGLWNLSVGEE---HKGAIADAGGVKAL 515 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~--~~~~~a~~~L~nL~~~~~---~~~~i~~~g~i~~L 515 (617)
.++++.|+|+|.|++.+.+ .|+.+.+.|++++++.++.+.-. .+...+.|+|.||+.... .-..+. .++|.|
T Consensus 171 ~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL 248 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPIL 248 (526)
T ss_pred HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHH
Confidence 9999999999999999655 68888999999999999987544 788999999999997652 223333 478999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 516 VDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 516 ~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
.+++ .+.++++...|+|++..|+..+. ....+++.|..+.|+++|.+++ ..++.-|...+.|+...++. ...
T Consensus 249 ~KLi---ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~---QTq 321 (526)
T COG5064 249 AKLI---YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDD---QTQ 321 (526)
T ss_pred HHHH---hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecCcc---cee
Confidence 9999 56889999999999999997654 4567789999999999999875 79999999999999885444 677
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
++++.|+++.+..+|.++.+.+|
T Consensus 322 viI~~G~L~a~~~lLs~~ke~ir 344 (526)
T COG5064 322 VIINCGALKAFRSLLSSPKENIR 344 (526)
T ss_pred hheecccHHHHHHHhcChhhhhh
Confidence 88899999999999999988776
No 10
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.82 E-value=6.1e-19 Score=162.25 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=184.8
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
+|.+.+-|-+++.+.|..|..-.+.+.+. +.+..+ +.++++|.+|.+++++.+. ..-.+..|+|+|.|+++..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~-E~~PPI-----q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSK-ETSPPI-----QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccCCCc-----hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 37788888888889999999988887544 444445 6899999999999999655 4557889999999999966
Q ss_pred hhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
... ..+++.|++|.++++|.+.+.+|++.|+|||.|+|.++ ..|..+.+.|++++++.++.. ...+-.+.+++.|+|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s-s~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh-ccchHHHHHHhHHHH
Confidence 554 45568999999999999999999999999999999877 567778889999999999975 444568999999999
Q ss_pred HHhccCC---CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAADD---KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~~---~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
.|||... +....|.+ .+|.|.+++.+.+ +++...|+|++.+|+-.+.. ....+.+.|..+.|+++|.+++.
T Consensus 226 SNlcRGknP~P~w~~isq--alpiL~KLiys~D-~evlvDA~WAiSYlsDg~~E---~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSRD-PEVLVDACWAISYLSDGPNE---KIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred HHhhCCCCCCCchHHHHH--HHHHHHHHHhhcC-HHHHHHHHHHHHHhccCcHH---HHHHHHhcCCcHHHHHHhcCccc
Confidence 9999753 33445544 7899999999886 89999999999999764333 45677799999999999999876
Q ss_pred CC
Q 007131 615 GV 616 (617)
Q Consensus 615 ~v 616 (617)
.|
T Consensus 300 ~i 301 (526)
T COG5064 300 KI 301 (526)
T ss_pred cc
Confidence 65
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.8e-16 Score=144.79 Aligned_cols=236 Identities=17% Similarity=0.274 Sum_probs=199.2
Q ss_pred HHhcCh-HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccC--CchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLM-QSTQEDVQERAATGLATFVVINDENASI--DCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAK 450 (617)
Q Consensus 376 ~~~~~i-~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~ 450 (617)
+.+.++ +.+...+ +.+..++.+.++++++.|...+|-.+.+ -..+.+.|+..|++..|++.++-. +|++...++.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~ 264 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLST 264 (461)
T ss_pred HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHH
Confidence 467777 7777555 4444578899999999998887766666 255667888999999999999886 8999999999
Q ss_pred HHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNR----LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 451 ~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
+|..|+..++.+..|.+.||++.|++++.+.+. +..+.++..|..|+.++.++..|++.||.+.++.++.. ++++
T Consensus 265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-h~~~ 343 (461)
T KOG4199|consen 265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-HSDD 343 (461)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH-cCCC
Confidence 999999999999999999999999999988443 35567899999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhc-CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHH
Q 007131 527 DGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~ 604 (617)
+.+..+++.++.-|| ..+++...+++.|+....++.++- +....++.+||++++|+...+.. +...+.. .|++.
T Consensus 344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~---~~~~~l~-~GiE~ 419 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE---NRTILLA-NGIEK 419 (461)
T ss_pred hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh---ccchHHh-ccHHH
Confidence 999999999999999 567778888999999999998864 44468999999999999986655 4556554 55999
Q ss_pred HHHHhcCCCCCC
Q 007131 605 LVQLTRSPHEGV 616 (617)
Q Consensus 605 L~~ll~~~~~~v 616 (617)
|++.....++.+
T Consensus 420 Li~~A~~~h~tc 431 (461)
T KOG4199|consen 420 LIRTAKANHETC 431 (461)
T ss_pred HHHHHHhcCccH
Confidence 999888877764
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.75 E-value=2.2e-18 Score=163.91 Aligned_cols=235 Identities=20% Similarity=0.281 Sum_probs=151.2
Q ss_pred cCChHhHHHHhhhchhHHHhhcCC-CcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcC----
Q 007131 54 CLNYRDRASLSSTCRTWRALGASP-CLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQA---- 124 (617)
Q Consensus 54 ~L~~~~~~~~~~vck~w~~~~~~~-~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~---- 124 (617)
++........+++|+.|+.+...+ ..| ++..++.+.+.|++|++|+++.|..... .....+
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~i----------T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~ 245 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSI----------TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELE 245 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchh----------HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhh
Confidence 677777789999999999988776 334 5667778888899999999887743221 112223
Q ss_pred ----------------------CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 125 ----------------------RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 125 ----------------------~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
.-+.++++..|..++|.+++.+..+|..|+.|+.+ .|..+++..+..+.++|++|+
T Consensus 246 ~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 246 KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceE
Confidence 33445555566556666666666666666666664 366666666666666666666
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHh---cCCCC
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWH---KLPKL 255 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L 255 (617)
.|.+++|.++++.++..+..+|+.|+.+++.+|..++|..+ .+|+.|+.|.++.|..++|+++..+.. +...|
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 66666666666666666666666666666666655555443 355666666666666666666555442 33456
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
+.+.++.+....+..-+.+..|++|+.+++.+|..++...+.++.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 666666655544444555556666666666666666666655554
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.73 E-value=1.3e-16 Score=168.34 Aligned_cols=201 Identities=24% Similarity=0.203 Sum_probs=177.7
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCH
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i 471 (617)
++++...+...|.|||.+... ...+.+.|.++.|+++|++++.++...++.+|.+||...+++..+.+.|.|
T Consensus 262 QeqLlrv~~~lLlNLAed~~v--------e~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRV--------ELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHH--------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 456667888899999755433 267889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 007131 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (617)
Q Consensus 472 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 551 (617)
+.|++++.+++.+++..|+.+|.|||++++.|..|++.|++|.|+.+|. ++..+..++.+|+++|.++++|..+.
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~-----d~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK-----DPNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC-----CCchHHHHHHHHHHhccCHhhHHHHh
Confidence 9999999999999999999999999999999999999999999999994 23456779999999999999999999
Q ss_pred HhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHh
Q 007131 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT 609 (617)
Q Consensus 552 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll 609 (617)
..++++.+++++.+++.+++...+.+++.|||.+. .+++.+.+.|+++.|++..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~----rnaqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK----RNAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH----HHHHHHHhcCcHHHHHHHH
Confidence 99999999998766555788888999999999833 3567777888999998854
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=7.3e-17 Score=172.43 Aligned_cols=214 Identities=22% Similarity=0.252 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch--hhHHHHHHhCC
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA--KVAKAVAEEGG 470 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~ 470 (617)
-.++..|.++|.||+..+..|+. ..+...|+++++|..|.+..+++....+.+|+||++.. ..+..+.+.|-
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa------~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~Gs 438 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKA------TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGS 438 (2195)
T ss_pred HHHHHHHHHHhhccccccccchh------hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhh
Confidence 46799999999999988887752 35668899999999999998899999999999999944 46888889999
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh-cCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhcc----
Q 007131 471 INILAVL-ARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD-AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAA---- 542 (617)
Q Consensus 471 i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~-~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~---- 542 (617)
|..|+.+ |....+..+...+.|||||+.+. +|+..|+. .|++..||.+|.. +.+....+++.|.++|.|++.
T Consensus 439 VtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt 518 (2195)
T KOG2122|consen 439 VTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT 518 (2195)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc
Confidence 9999988 66677788999999999998654 99999998 8999999999976 345567899999999999975
Q ss_pred CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 543 DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 543 ~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.++.|..+.+.+.+..|+..|++.. -.+..++|++||||+..... ..+++++.|+|+.|..++++++.++
T Consensus 519 ~E~yRQILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~---DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 519 CEDYRQILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPE---DQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHH---HHHHHHhcccHHHHHHHHhhhhhhh
Confidence 4556888889999999999999874 79999999999999985443 6788999999999999999998765
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.65 E-value=1.4e-14 Score=153.16 Aligned_cols=235 Identities=24% Similarity=0.255 Sum_probs=187.3
Q ss_pred HHHhhccCCccchHHHHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc
Q 007131 361 LLRTAESNPQGLDDFWLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (617)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~ 439 (617)
+..+++........ ...|+ +.|+++|.+++.++...++..|.+|+...+ |+ ..|.+.|+++.|++++.+
T Consensus 273 LlNLAed~~ve~kM--~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK-------~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 273 LLNLAEDPRVELKM--VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NK-------DEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHhcChHHHHHH--HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HH-------HHHHHcCCHHHHHHHhcC
Confidence 34445544444433 45555 999999999999999999999999965543 33 689999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI 519 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll 519 (617)
++.+++..++++|.|||.+++.|..+++.|.+|.|+.+|.++ ..+..+..+|++||.+++.|..+...+++|.+++++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999754 456779999999999999999999999999999998
Q ss_pred hhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH------------------------------------
Q 007131 520 FKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA------------------------------------ 563 (617)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll------------------------------------ 563 (617)
.. .+.+.+...+++++.|||.+..+.+.|.+.|+++.|++..
T Consensus 421 l~--~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~ 498 (708)
T PF05804_consen 421 LE--NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKI 498 (708)
T ss_pred Hh--CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 64 3455666778888888888888877777767766655422
Q ss_pred -hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 564 -RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 564 -~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..+++++..-.+.++|.||+..+. .....+.+.+.+|.|..++..+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~l---d~~~ll~~~~llp~L~~~L~~g 545 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDL---DWAQLLQEYNLLPWLKDLLKPG 545 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCc---CHHHHHHhCCHHHHHHHHhCCC
Confidence 222346777788899999986322 2445555789999999998754
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=3.2e-14 Score=133.36 Aligned_cols=227 Identities=20% Similarity=0.185 Sum_probs=183.7
Q ss_pred HHhcChHHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
|..+.++.++.+|+ +.++.+++.|+.++.+.+..+ ..+..+.+.|+++.+..+|.++++.+++.|+.+|.|
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--------~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP--------FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--------hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 43444588999997 478999999999999986543 334678899999999999999999999999999999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
+|.+.+++..|.. .++.+++...+. +.+++..++.+|.||+..++++..+.. .++.++.+|. +++..++..
T Consensus 81 ls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~~~~k~~ 153 (254)
T PF04826_consen 81 LSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGSEKTKVQ 153 (254)
T ss_pred cCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCChHHHHH
Confidence 9999999998854 477777766553 668999999999999988888777754 7999999995 588899999
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc-----------ccccccC-
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS-----------AVGQEAG- 600 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----------~~~~~~g- 600 (617)
++.+|.|||.++.....++.++++..++.++....+.++...+.....||..+-..+.... ..+.+.+
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~ 233 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQ 233 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHH
Confidence 9999999999999988999889999999999877667899999999999975332221111 1122333
Q ss_pred cHHHHHHHhcCCCCCCC
Q 007131 601 ALEALVQLTRSPHEGVR 617 (617)
Q Consensus 601 ~~~~L~~ll~~~~~~vr 617 (617)
..++|..+..+++++||
T Consensus 234 ~~~~l~~l~~h~d~ev~ 250 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVK 250 (254)
T ss_pred HHHHHHHHHcCCCHHHh
Confidence 56777778888888775
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.58 E-value=1e-13 Score=143.14 Aligned_cols=221 Identities=24% Similarity=0.285 Sum_probs=180.4
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCC--cccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDE--NASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ 454 (617)
-.||+.+|.++.+...+++.+||++|+||...... |+ ..|.+.++++.++++|+. .|.++++.++.+|+|
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK-------lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK-------LAIKELNGVPTLVRLLRHTQDDEVRELITGILWN 346 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc-------hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 35779999999999999999999999999876555 43 578899999999999997 489999999999999
Q ss_pred hccchhhHHHHHHh--------------------------------------------------------CCHHHHHHHH
Q 007131 455 LSVNAKVAKAVAEE--------------------------------------------------------GGINILAVLA 478 (617)
Q Consensus 455 ls~~~~~~~~i~~~--------------------------------------------------------~~i~~L~~lL 478 (617)
|++++..|..+... |.|+.|+..+
T Consensus 347 LSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i 426 (717)
T KOG1048|consen 347 LSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI 426 (717)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence 99876655444321 3466666554
Q ss_pred h-------------------------------------------------------------------------------
Q 007131 479 R------------------------------------------------------------------------------- 479 (617)
Q Consensus 479 ~------------------------------------------------------------------------------- 479 (617)
.
T Consensus 427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 4
Q ss_pred -----------------------cCCHHHHHHHHHHHHHhcCCc-----chHHHH-HhcCChHHHHHHHhhcCCCCHHHH
Q 007131 480 -----------------------SMNRLVAEEAAGGLWNLSVGE-----EHKGAI-ADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 480 -----------------------~~~~~~~~~a~~~L~nL~~~~-----~~~~~i-~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
+.++.+.|++++||-||+... ..+..+ ..+.+++.|+++|+ .+++.++
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~---~~~~~vv 583 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR---NDDSDVV 583 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh---cCCchHH
Confidence 123456778899999998654 345555 56899999999995 5888999
Q ss_pred HHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCc-----hhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-----EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
+.++++|.||+.+..+++.|. .++++.|++.|..+.. +++...++.+|+|+... +..++..+.+.+++++|
T Consensus 584 ~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~---~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 584 RSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK---NVLNAKDLLEIKGIPKL 659 (717)
T ss_pred HHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH---hHHHHHHHHhccChHHH
Confidence 999999999999999999998 5889999999976543 78999999999999864 44477888899999999
Q ss_pred HHHhcCC
Q 007131 606 VQLTRSP 612 (617)
Q Consensus 606 ~~ll~~~ 612 (617)
+.+..+.
T Consensus 660 ~~I~~s~ 666 (717)
T KOG1048|consen 660 RLISKSQ 666 (717)
T ss_pred HHHhccc
Confidence 9988774
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=5.6e-13 Score=123.29 Aligned_cols=230 Identities=21% Similarity=0.248 Sum_probs=183.3
Q ss_pred chHHHHhcChHHHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHH
Q 007131 372 LDDFWLKQGAGLLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEA 448 (617)
Q Consensus 372 ~~~~~~~~~i~~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a 448 (617)
.|.++...|...++++|. .++.++.......+..-+.. ++.+|+.+++.+..+.+...|..+ ..++.+.+
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-------hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel 210 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM-------HEVNRQLFMELKILELILQVLNREGKTRTVREL 210 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHH
Confidence 344455566678888884 45566655555555543222 356678999999999999777654 45688899
Q ss_pred HHHHHHhccchhh----------HHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 449 AKAIANLSVNAKV----------AKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 449 ~~~L~~ls~~~~~----------~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
+++++.|..+++. ...|++.|+...|++.++. -+|++...++.+|..|+...+.+..|.+.||+..|+.
T Consensus 211 ~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 211 YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLR 290 (461)
T ss_pred HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999987653 4677788889999999987 4688899999999999999999999999999999999
Q ss_pred HHhhcC-CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH-hcCCchhHHHHHHHHHHHHhccCCCCCCcccc
Q 007131 518 LIFKWS-SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA-RSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (617)
Q Consensus 518 ll~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (617)
++.++. .++..+.+.++..|+.|+..++++..|++.|+.+.++.++ ++.+++.+.+.++.++.-||...+. ....
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd---hsa~ 367 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD---HSAK 367 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc---hHHH
Confidence 997511 1233466889999999999999999999999999999855 6666799999999999999986554 5677
Q ss_pred ccccCcHHHHHHHhcC
Q 007131 596 GQEAGALEALVQLTRS 611 (617)
Q Consensus 596 ~~~~g~~~~L~~ll~~ 611 (617)
+++.|+-...++.++.
T Consensus 368 ~ie~G~a~~avqAmka 383 (461)
T KOG4199|consen 368 AIEAGAADLAVQAMKA 383 (461)
T ss_pred HHhcchHHHHHHHHHh
Confidence 8899999888887764
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.54 E-value=4.7e-14 Score=145.51 Aligned_cols=201 Identities=25% Similarity=0.292 Sum_probs=168.6
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
|.....+..+.||.+.++.+|-+|+..+..++..+.+-+ ..+...|+|+.||.+|.+.+.+++..||++|+||
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik-------~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIK-------SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHH-------HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 555556888999999999999999999999976654432 5788999999999999999999999999999999
Q ss_pred cc---chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC-------
Q 007131 456 SV---NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS------- 524 (617)
Q Consensus 456 s~---~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~------- 524 (617)
++ +++++-.|.+.+||+.++++|+. .+.++++...++||||+..+..+..++. .++..|..-+-..++
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCc
Confidence 99 34589999999999999999997 7889999999999999999888877776 467777665543222
Q ss_pred C----CHHHHHHHHHHHHHhcc-CCCchHHHHHh-CCHHHHHHHHhc-----CCchhHHHHHHHHHHHHhc
Q 007131 525 G----GDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS-----CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 525 ~----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-~~~~~L~~ll~~-----~~~~~~~~~a~~~L~~l~~ 584 (617)
. ...+..++++||+|++. ..+.|+++.+. |.|..|+..+++ ..+++..++++.+|+||+.
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 1 35788999999999987 66779999875 668888887762 2347899999999999986
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.54 E-value=2.1e-12 Score=138.51 Aligned_cols=474 Identities=18% Similarity=0.176 Sum_probs=249.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH------------HH----H-hcCCCccEEeccCCCCCCHHHH
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS------------II----H-LQARNLRELSGDYCRKITDATL 143 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~------------~~----~-~~~~~L~~L~l~~~~~~~~~~l 143 (617)
.++++.+.......+..+.+.+ |+++.+.+...... +. . ..-.+|++|++++...+...-.
T Consensus 63 tki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~ 140 (699)
T KOG3665|consen 63 TKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP 140 (699)
T ss_pred EEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence 5677777777777777766654 88888876422110 11 1 1446899999988765655556
Q ss_pred HHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---
Q 007131 144 SVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--- 220 (617)
Q Consensus 144 ~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--- 220 (617)
..+...+|.|+.|.+.+ . .+..+.+..+..++|||..|+++++ ++++- ..+ +..++|+.|.+.+-..-+-
T Consensus 141 ~kig~~LPsL~sL~i~~--~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISG--R-QFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred HHHhhhCcccceEEecC--c-eecchhHHHHhhccCccceeecCCC-CccCc--HHH-hccccHHHHhccCCCCCchhhH
Confidence 77888899999999952 3 5656668888888999999999988 66552 222 3568888888877533322
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHH----HHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHH
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVS----QVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~----~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
..+..+++|+.||+|......+..+. +....+|+|+.||.++++++.+.+..++...|+|+.+.+.+|........
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~ 293 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAVSS 293 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccccc
Confidence 34577899999999987665544221 22246899999999999999999999999999999888776542222211
Q ss_pred HHHHhhcCceehhhhhcHHHHHHHHhccCCcCcchhhhhhhcccc-----C-CcchhhHHHHHHHHHHHHHHHhhccCCc
Q 007131 297 ISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKN-----K-DKNLNEIMTWLEWILSHILLRTAESNPQ 370 (617)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~-----~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 370 (617)
.++ .-+..+......+.+.++.... +.....+|-..- . +........-+.....+.......
T Consensus 294 ~~i----~~ln~at~~s~i~~L~~~~~l~----r~~~v~~cl~~l~~~~~~~~~~~~~~~~~~l~~i~~sm~~~~s---- 361 (699)
T KOG3665|consen 294 TEI----RVLNTATLDSSIQALTYYLNLK----RPSEVSRCLNELLDLLKSLDSTREYDISECLKLIINSMNTFSS---- 361 (699)
T ss_pred cCc----eeeeecchhHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC----
Confidence 010 1112223333344444433332 111111111100 0 000000000000000000000000
Q ss_pred cchHHHHhcChHHHHHhhcc----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH------hc-
Q 007131 371 GLDDFWLKQGAGLLLSLMQS----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA------KS- 439 (617)
Q Consensus 371 ~~~~~~~~~~i~~l~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL------~~- 439 (617)
+..+ .|..-+..+..+ -.+..+..++..|.|.......-. ......+. ..+-.++.++ .+
T Consensus 362 --~~~i--~~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~~~~~~---~~~~~~~~--~~i~~~~~~~~~~~~~~~~ 432 (699)
T KOG3665|consen 362 --SNQI--QGSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEKLDTLD---SNDELTLC--NSIILLLSLLVSRRKLLSV 432 (699)
T ss_pred --hhhh--hHHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhcccccc---cchhHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 0000 011111222211 122334445555555432211100 00000000 0000000000 00
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHH----hCCHHHHHHHH---hc--CC--HHHHHHHHHHHHHhcC-CcchHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAE----EGGINILAVLA---RS--MN--RLVAEEAAGGLWNLSV-GEEHKGAIA 507 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~~~i~~L~~lL---~~--~~--~~~~~~a~~~L~nL~~-~~~~~~~i~ 507 (617)
.++..+..+...+.........+..+.. .|..+....++ .- .. ..+.+.. +||+++. .++++..+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~t~~~~~~C~~~l 510 (699)
T KOG3665|consen 433 LDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFT--ALWNITDENPETCKEFL 510 (699)
T ss_pred cchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHH--HHHhhhcCCHHHHHHHH
Confidence 1111122222222211111111111110 11112222211 11 11 1222222 9999995 558999999
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHH--HHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVH--ALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~--~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+.||+..+.+.+.. . ...+++..+++.+.|++...+.+........+. .+-.++..-++.+.-+.|+++|+.+..+
T Consensus 511 ~~~g~~~~~~~l~~-f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 511 DNGGMKLLFKCLES-F-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSD 588 (699)
T ss_pred hcccHHHHHHHHhh-c-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhC
Confidence 99999999999986 3 677999999999999998766544443322222 3333444444348889999999999986
Q ss_pred CCC
Q 007131 586 GDS 588 (617)
Q Consensus 586 ~~~ 588 (617)
+++
T Consensus 589 ~~~ 591 (699)
T KOG3665|consen 589 SEK 591 (699)
T ss_pred CCc
Confidence 554
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=8.4e-13 Score=123.85 Aligned_cols=180 Identities=23% Similarity=0.217 Sum_probs=156.2
Q ss_pred HHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc
Q 007131 423 AVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE 501 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 501 (617)
.+.+.+.++.|+.+|+.. +|.+++.|..++.+.+..+.+++.+.+.||++.+..+|.++++.+++.|+.+|.|++.+.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 457888899999999965 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 502 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
++..+-. .++.+++.... ..-+..++..++++|.||+..++.+..+.. .++.++.++.+++ ..++..+..+|.|
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~-~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGS-EKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHHH--HHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 9988754 57777776653 334668999999999999988888777754 7899999999986 8999999999999
Q ss_pred HhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|+..++ ....+..+.++..++.+++..
T Consensus 161 LS~np~----~~~~Ll~~q~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 161 LSENPD----MTRELLSAQVLSSFLSLFNSS 187 (254)
T ss_pred hccCHH----HHHHHHhccchhHHHHHHccC
Confidence 998433 456666778899999998875
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-12 Score=119.53 Aligned_cols=174 Identities=18% Similarity=0.262 Sum_probs=143.0
Q ss_pred cccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 007131 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALE 154 (617)
Q Consensus 79 ~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~ 154 (617)
..+.+.+.+.+.++.++..+.+. .+|..|++++|..... .+..+|+.|..|+++.|...++..-..+..--++|.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 34677888889999999888887 8999999999966533 344589999999999999666664444555668999
Q ss_pred eEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH---hcCcCCCe
Q 007131 155 SLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSVRF 231 (617)
Q Consensus 155 ~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~~~~L~~ 231 (617)
.|+|+| +..++.+..+..++..||+|.+|+|++|..+++..+..+. .++.|++|.++.|..+....+ ...|.|.+
T Consensus 290 ~LNlsG-~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSG-YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhh-hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 999985 5557778889999999999999999999999997777666 469999999999998888764 67799999
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++.+| ++|..+.-+...||+|+.
T Consensus 368 Ldv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 368 LDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EEeccc--cCchHHHHHHHhCccccc
Confidence 999997 667777777778888764
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=4e-11 Score=101.15 Aligned_cols=117 Identities=39% Similarity=0.529 Sum_probs=107.0
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE- 500 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~- 500 (617)
.+.+.|+++.+++++.+.+++++..|+.+|.+++.+ ++.+..+.+.|+++.++++|.++++.++..|+++|+||+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999997 788889999999999999999999999999999999999877
Q ss_pred chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 501 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
..+..+.+.|+++.+++++. +.+..+++.++++|++|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~---~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLD---SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHh---cCCHHHHHHHHHHHHHhhC
Confidence 56777788999999999996 4678999999999999973
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=6.2e-11 Score=118.96 Aligned_cols=187 Identities=22% Similarity=0.239 Sum_probs=124.4
Q ss_pred hCCCceEEEecCCCCccHH---HHh--cCCCccEEeccCCCCCCHHHHHHH---HhcC-CCcceEEEcCCCCCCCCHHHH
Q 007131 101 RCMNLQKLRFRGAESADSI---IHL--QARNLRELSGDYCRKITDATLSVI---VARH-EALESLQLGPDFCERITSDAV 171 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~l~~i---~~~~-~~L~~L~l~~~~~~~i~~~~l 171 (617)
.+++|++|++++|.+.... +.. ..++|++|++++|. +++.++..+ ...+ ++|+.|+++ +| .++..+.
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~--~n-~l~~~~~ 154 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLG--RN-RLEGASC 154 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcC--CC-cCCchHH
Confidence 3678888888888765321 111 11568888888876 665554443 3345 788888885 35 5664443
Q ss_pred HH---HHhcCCCCCeeeccCccCCcHHHHHHHHh---cCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCC
Q 007131 172 KA---IALCCPKLKKLRLSGIRDICGDAINALAK---LCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTS 238 (617)
Q Consensus 172 ~~---l~~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~ 238 (617)
.. ....+++|++|++++| .+++.++..+.. .+++|++|++++| .+++.+ +..+++|++|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n- 231 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN- 231 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence 33 3344678888888887 677666655443 3358888888888 565433 346678888888887
Q ss_pred CCCHHHHHHHHhcC----CCCCeEEeccCCCCHH---HHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 239 NMKWGVVSQVWHKL----PKLVGLDVSRTDVGPI---TISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 239 ~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++.++..+...+ +.|++|++++|.+++. .+...+..+++|+++++++|....+.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 57777776666554 6888888888887643 33445555678888888888755443
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=4.3e-11 Score=100.95 Aligned_cols=116 Identities=43% Similarity=0.508 Sum_probs=105.0
Q ss_pred HHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 464 AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 464 ~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
.+++.|+++.++++|.+.++.+++.|+.+|++++.. ++.+..+.+.|+++.++++|. +.++.++..|+++|+|++.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHcc
Confidence 467889999999999999999999999999999987 688889999999999999995 4788999999999999998
Q ss_pred CCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 543 DDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 543 ~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+ .+..+.+.|+++.+++++..++ .++++.|+++|.+|+
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhh
Confidence 764 4666788899999999999874 899999999999997
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.31 E-value=3.6e-10 Score=121.53 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=132.3
Q ss_pred CceEEEecCCCCccHHHHh-cCCCccEEeccCCCCCCHHH-----------HHHHH--hcCCCcceEEEcCCCCCCCCHH
Q 007131 104 NLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDAT-----------LSVIV--ARHEALESLQLGPDFCERITSD 169 (617)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----------l~~i~--~~~~~L~~L~l~~~~~~~i~~~ 169 (617)
+++.+++.+.......... ....|++|.+.+...+.... +..++ ..-.+|++|+++| ...++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G--~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG--SELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc--cchhhcc
Confidence 5777887776554443322 44458888877654322211 11121 1234899999975 6677888
Q ss_pred HHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 170 AVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 170 ~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
....++..+|+|++|.+.+. .+..+.+..++..+|||..||++++ .+++ .|++.+++|+.|.+.+-.--+...+..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHH
Confidence 88899999999999999987 5555568889999999999999999 4554 8899999999999977533344666666
Q ss_pred HhcCCCCCeEEeccCCC--CHHHHHHHHh---cCCCCCEEEccCCCCCChhHHHHH
Q 007131 249 WHKLPKLVGLDVSRTDV--GPITISRLLT---SSKSLKVLCALNCPVLEEENNISA 299 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~--~~~~l~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~ 299 (617)
+ ++.+|+.||+|.... ....+...+. .+|+|++||.++.. +.+..++.+
T Consensus 217 F-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~l 270 (699)
T KOG3665|consen 217 F-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEEL 270 (699)
T ss_pred h-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHH
Confidence 6 489999999999422 2223333333 38999999999665 444444443
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.31 E-value=5.7e-12 Score=134.37 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=150.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcCCCccEEeccC-CCCCCHHH--HHHHHhcCCCcceEEEcC
Q 007131 88 HKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDY-CRKITDAT--LSVIVARHEALESLQLGP 160 (617)
Q Consensus 88 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~-~~~~~~~~--l~~i~~~~~~L~~L~l~~ 160 (617)
...+......+...+++|+.|.+.+|..... .+...+++|+.|++++ |..+++.. ...+...|++|+.|++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~- 251 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS- 251 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-
Confidence 3456667777777789999999988855432 2334888999999887 34343333 44567788899999995
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAG 236 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~ 236 (617)
+|..++|.++..++..|++|++|.+.+|..++++++..++..||+|++|++++|..+++.++ .+|++|+.|.+..
T Consensus 252 -~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 252 -GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 58778999999988889999999988886689999999998899999999999888877654 4566655554433
Q ss_pred C---CCCC------------HHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC--------------CEEEccC
Q 007131 237 T---SNMK------------WGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL--------------KVLCALN 287 (617)
Q Consensus 237 ~---~~i~------------~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L--------------~~L~l~~ 287 (617)
+ ..++ +........+|++|+++.+.++..++..+..++.+||+| +.|+++.
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 2 2232 244445557788888888888665555556666677766 6677777
Q ss_pred CCCCChhHHHH
Q 007131 288 CPVLEEENNIS 298 (617)
Q Consensus 288 c~~~~~~~~~~ 298 (617)
|...++..+..
T Consensus 411 ~~~~t~~~l~~ 421 (482)
T KOG1947|consen 411 CRLVTDKGLRC 421 (482)
T ss_pred CccccccchHH
Confidence 77666666444
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=1.7e-10 Score=115.85 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred cccCCCCCCCCHHH---HHHHHHhCCCceEEEecCCCCc--cH----HH--HhcCCCccEEeccCCCCC--CHHHHHHHH
Q 007131 81 SSLDLRAHKCDIAM---AASLASRCMNLQKLRFRGAESA--DS----II--HLQARNLRELSGDYCRKI--TDATLSVIV 147 (617)
Q Consensus 81 ~~l~l~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~--~~----~~--~~~~~~L~~L~l~~~~~~--~~~~l~~i~ 147 (617)
..+++.+..++... +.......+++++++++++... .. .. ...+++|++|++++|... ....+..+.
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 45555555554432 2223334455777777665443 11 00 114567777777766522 112233333
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHH---hcC-CCCCeeeccCccCCcHHHHHH---HHhcCCCCceEeecCCCCCCH
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIA---LCC-PKLKKLRLSGIRDICGDAINA---LAKLCPNLTDIGFLDCLNVDE 220 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~---~~~-~~L~~L~l~~~~~i~~~~l~~---l~~~~~~L~~L~l~~~~~~~~ 220 (617)
.. ++|+.|+++ +| .+++.++..+. ..+ ++|+.|++++| .++..+... ....+++|++|++++| .+++
T Consensus 106 ~~-~~L~~L~ls--~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 179 (319)
T cd00116 106 RS-SSLQELKLN--NN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GIGD 179 (319)
T ss_pred cc-CcccEEEee--CC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCch
Confidence 33 557777774 23 45554444332 223 66777777776 455333222 2334456777777776 4553
Q ss_pred HH-------HhcCcCCCeecccCCCCCCHHHHHHH---HhcCCCCCeEEeccCCCCHHHHHHHHhcC----CCCCEEEcc
Q 007131 221 VA-------LGNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVGPITISRLLTSS----KSLKVLCAL 286 (617)
Q Consensus 221 ~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~----~~L~~L~l~ 286 (617)
.+ +..+++|++|++++| .+++.+...+ ...+++|++|++++|.+++..+..+...+ +.|+.|+++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 32 233457777777776 4554444333 34566777777777766665555554443 577777777
Q ss_pred CCCC
Q 007131 287 NCPV 290 (617)
Q Consensus 287 ~c~~ 290 (617)
+|.+
T Consensus 259 ~n~i 262 (319)
T cd00116 259 CNDI 262 (319)
T ss_pred CCCC
Confidence 6653
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=3.1e-11 Score=130.31 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=168.2
Q ss_pred cCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhc
Q 007131 379 QGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 379 ~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls 456 (617)
.|+ +.+|..|.+..+++....+.+|+||.+..|.+.+ +.+-+.|-+..|+... ....+......+.+||||+
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK------kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS 466 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK------KVLRETGSVTALAACALRNKKESTLKAVLSALWNLS 466 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH------HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh
Confidence 344 9999999999999999999999999999888863 4566889999998864 4456677888899999999
Q ss_pred cc-hhhHHHHHHhC-CHHHHHHHHhcC----CHHHHHHHHHHHHHhc----CCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 457 VN-AKVAKAVAEEG-GINILAVLARSM----NRLVAEEAAGGLWNLS----VGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 457 ~~-~~~~~~i~~~~-~i~~L~~lL~~~----~~~~~~~a~~~L~nL~----~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
.+ .++|..|...+ ++..|+.+|... .-.+.+.|.++|.|++ ..+++|+.+.+.+.+..|++.|+ +.+
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK---S~S 543 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK---SHS 543 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh---hcc
Confidence 94 67899998855 499999999874 3368899999999876 46689999999999999999996 477
Q ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 527 DGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
-.++.+++++||||+ .+.+..+.+++.|+++.|-.++++.+ .-+-..++.+|.||-...
T Consensus 544 LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHHHhcCC
Confidence 789999999999997 56777899999999999999999875 677788999999998754
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.18 E-value=8.2e-11 Score=125.47 Aligned_cols=139 Identities=29% Similarity=0.433 Sum_probs=109.1
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHH--HHHHHhcCCCCCeeeccCccCCcHHHHHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDA--VKAIALCCPKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~--l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l 200 (617)
.++.|+.|.+..|..+++.++..+...|++|+.|++++ .|..++..+ ...+...|++|+.|+++++..+++.++..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG-CCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC-cccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 57888888888888888888888888888899988863 133333322 444667788888888888866888888888
Q ss_pred HhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 201 AKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+..||+|++|.+.+|..+++.++ ..|++|++|++++|..+++.++..+..+|++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 88888899888888876888765 567888888888888888888888888888887776555
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-10 Score=107.73 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=133.1
Q ss_pred HHHhCCCceEEEecCCCCccHHH------HhcCCCccEEeccCCCCCCHHHHHHH------------HhcCCCcceEEEc
Q 007131 98 LASRCMNLQKLRFRGAESADSII------HLQARNLRELSGDYCRKITDATLSVI------------VARHEALESLQLG 159 (617)
Q Consensus 98 l~~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~l~~i------------~~~~~~L~~L~l~ 159 (617)
....||.|+.|+|+.+.+....+ ..+|..|++|.|.+|. +...+-..+ ...-+.|+++..+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34467899999999886653221 1268999999999997 544432221 1245689999996
Q ss_pred CCCCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHH---hcCCCCceEeecCCCCCCHH-H------HhcC
Q 007131 160 PDFCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLDCLNVDEV-A------LGNV 226 (617)
Q Consensus 160 ~~~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~-~------l~~~ 226 (617)
.+.+.+.+.. ...+.+|+|+.+.++.+ .|..+++..+. .+||+|+.||+.+|. ++.. + ++.+
T Consensus 166 ---rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 166 ---RNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW 240 (382)
T ss_pred ---ccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc
Confidence 4455554443 44566789999999987 67766664333 679999999999994 4442 2 4677
Q ss_pred cCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEeccCCCCHHHHHHH---HhcCCCCCEEEccCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRL---LTSSKSLKVLCALNCPV 290 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~l~~~---~~~~~~L~~L~l~~c~~ 290 (617)
++|+.|++++| .+.+.+...+. ...|+|+.|.+.+|+++.++...+ ...-|.|+.|++++|..
T Consensus 241 ~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 89999999998 66666654444 568999999999999876654433 33478999999999985
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=8.6e-10 Score=107.07 Aligned_cols=200 Identities=18% Similarity=0.121 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 470 (617)
.++++.+.|...|.|||..-.-. .++.....+..||+.|...+.++.......|..||...+++..+.+.|.
T Consensus 275 KQeqLLrva~ylLlNlAed~~~E--------lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~i 346 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDISVE--------LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGI 346 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccH
Confidence 45677788899999997543222 3677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
|+.|+++.....++++..+...|.|++++..++.+++..|.+|.|+.++. ++.-..-|+..|..++.+++.+..+
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~-----~d~~~~iA~~~lYh~S~dD~~K~Mf 421 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD-----SDTKHGIALNMLYHLSCDDDAKAMF 421 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC-----CcccchhhhhhhhhhccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 3344556888999999999999999
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHH
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ 607 (617)
.....++.+++.+-++...++.......-.|||. +..+++.+.+..++..|.+
T Consensus 422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l----nkRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL----NKRNAQLVCEGQGLDLLME 474 (791)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh----ccccceEEecCcchHHHHH
Confidence 9999999999977666557887777777789997 3335666666666766655
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.08 E-value=7e-09 Score=109.11 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=176.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...++..+.+....++.+|..+...... .-...+..+.|...|.++++.+|..++..|.+++.+.+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~----------~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSP----------DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4466677776777778888888887533211 222677788999999999999999999999999987665
Q ss_pred -HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 -AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 -~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
...+.+.+.++.++.++.+++.++.+.|+.+|.+++..+.....+...+.++.|..++.. .++.++..+..++.++
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ---SSDIVRCRVYELLVEI 187 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc---cCHHHHHHHHHHHHHH
Confidence 455556777899999999999999999999999999988888888888889999999953 4678899999999999
Q ss_pred ccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 541 AADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 541 ~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
+..+ +....+.+.|.++.++..+.++ +.-++.+|+.+|..|+..+.+ ...+.+.|+++.|..++.....+
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g----~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHG----LQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhH----HHHHHhCCHHHHHHHHHhccccC
Confidence 8655 4567777789999999999985 488999999999999985554 56677899999999999876544
No 34
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.05 E-value=1.3e-10 Score=78.76 Aligned_cols=46 Identities=39% Similarity=0.763 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCC
Q 007131 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDL 85 (617)
Q Consensus 40 ~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l 85 (617)
|..||+|++.+||+||+.+|+.+++.|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 6789999999999999999999999999999999988899988765
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=5.3e-09 Score=103.56 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=157.1
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh------hCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 382 GLLLSLMQS--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMK------DGGIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 382 ~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~------~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
..++.+|+. .++++....+..+..+...+.... +.+.+ .....++++++..+|..++..|+.+|.
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~-------~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRV-------ELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSH-------HHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHH-------HHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 566677743 678889999999998866654332 33332 236788999998899999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh----cCCC
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----WSSG 525 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~ 525 (617)
.+....+.+..-...+.++.+++.|++ .+.+.+..|+.+|.+|...+++|..+.+.|+++.++.++.. ....
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 999855543333224557888888876 33456789999999999999999999999999999999921 1456
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 526 GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
..+++++++-|+|.|+.+++....+.+.+.++.|+++++....+++..-+.+++.|+...+... ....++..|+++.+
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~--~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS--NIELMVLCGLLKTL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT--HHHHHHHH-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH--HHHHHHHccHHHHH
Confidence 6789999999999999999999999999999999999987767999999999999999754432 55666667755555
Q ss_pred HHHhc
Q 007131 606 VQLTR 610 (617)
Q Consensus 606 ~~ll~ 610 (617)
-.+..
T Consensus 289 ~~L~~ 293 (312)
T PF03224_consen 289 QNLSE 293 (312)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 54443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.4e-11 Score=113.84 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=138.1
Q ss_pred CCCceEEEecCCCCccHH---HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 102 CMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
...|+.+.|.++...... ....|++++.|+|+..-.-....+..++..+|+|+.|+|+. + .+....=......+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-N--rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-N--RLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-c--cccCCccccchhhh
Confidence 355778888877655443 34479999999999876445667889999999999999972 1 12110001111246
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH--HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV--ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+.|+.|.|++| +++...+..+...||+|+.|.+.+|..+.-. ...-++.|+.|+|+++..++.+.+ .....+|.|+
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-cccccccchh
Confidence 88999999999 8999999999999999999999998533322 235578999999999877765443 3345789999
Q ss_pred eEEeccCCCCHHHHHHH-----HhcCCCCCEEEccCCCCCChhHHH
Q 007131 257 GLDVSRTDVGPITISRL-----LTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~-----~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
.|+++.+.++.-+.+.. ...+|+|++|++..|++..=..++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 99999986655443332 456899999999999875444433
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.02 E-value=1.5e-08 Score=97.46 Aligned_cols=224 Identities=22% Similarity=0.229 Sum_probs=170.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-------CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 454 (617)
+.|.+...+++.++-..++++|.|+++.+++++ ..+.+.||-..+++.|+.. +.+....++++|.|
T Consensus 90 e~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R-------~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 90 ELLRQTPSSPDTEVHEQCFRALGNICYDNNENR-------AAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred HHHHhCCCCCcccHHHHHHHHHhhhhccCchhH-------HHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 677777788888999999999999998888775 7899999988888888642 34678888999999
Q ss_pred hcc-chhhHHHHHHhCCHHHHHHHHh---------------------------------------------c-CCHHHHH
Q 007131 455 LSV-NAKVAKAVAEEGGINILAVLAR---------------------------------------------S-MNRLVAE 487 (617)
Q Consensus 455 ls~-~~~~~~~i~~~~~i~~L~~lL~---------------------------------------------~-~~~~~~~ 487 (617)
.+. +++.+..+.+.|.++.|...+- + .+++..+
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 887 5667888888888776654332 1 1223444
Q ss_pred HHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh----------------------------------------------
Q 007131 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---------------------------------------------- 521 (617)
Q Consensus 488 ~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---------------------------------------------- 521 (617)
....+|+..+.++..+..+.+.|.+..++++++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 5566667777777777777777776666665542
Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc----CCchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 522 -WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 522 -~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
.++++..++..+.-+++|+++.++....+++.+.+..|+.++.. .++-+++.+++.+|+|+.- +-. ++..+
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~---nka~~ 398 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVS---NKAHF 398 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCC---chhhc
Confidence 02245567778888999999999999999999999999998843 2236899999999999997 332 56677
Q ss_pred cccCcHHHHHHHhcCCCCCC
Q 007131 597 QEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~~v 616 (617)
..+|..+.+...++...+.|
T Consensus 399 ~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 399 APAGVTEAILLQLKLASPPV 418 (604)
T ss_pred cccchHHHHHHHHHhcCCcc
Confidence 78999999999888877655
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.01 E-value=1.5e-08 Score=106.72 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=162.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...|.++++.++..++..+.+++...+... ..+.+.+.++.++..+.+++..+...|+.+|.+++.++..
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-------~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-------QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-------HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 888899999999999999999999875554432 4667899999999999999999999999999999999888
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.+...+++..|..++...++.++..+..++.+++. +++....+.+.|.++.++..+. +++.-++.+|+.+|..|
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSEL 229 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHH
Confidence 8888888889999999988888899999999999985 4567777777999999999995 47777899999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchh-----HHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEG-----VQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~-----~~~~a~~~L~~l~~ 584 (617)
+..+.+...+.+.|+++.|..++.+...+. ..........+++.
T Consensus 230 a~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 230 AETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 998899999999999999999997543222 22333455566665
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=1.9e-08 Score=99.55 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=142.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~ls~ 457 (617)
..++.++.+++..++..|+..|..|+...+... .-...+.++.++.++.+ ++.+++..|+.+|.+|..
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~--------~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS--------EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT----------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc--------cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 677788888899999999999999987766542 22225677889988876 345678999999999999
Q ss_pred chhhHHHHHHhCCHHHHHHHH-----hc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLA-----RS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL-----~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
.++.|..+.+.+|++.++.+| .. .+..++.+++.++|-|+++++....+...+.++.|+++++. +..+++.
T Consensus 180 ~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvv 257 (312)
T PF03224_consen 180 SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVV 257 (312)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHH
T ss_pred cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHH
Confidence 999999999999999999999 22 34578899999999999999999999998999999999985 6788999
Q ss_pred HHHHHHHHHhccCCC--chHHHHHhCCHHHHHHHHhcC-CchhHHHHHH
Q 007131 531 ERAAGALANLAADDK--CSMEVALAGGVHALVMLARSC-KFEGVQEQAA 576 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~--~~~~i~~~~~~~~L~~ll~~~-~~~~~~~~a~ 576 (617)
+-+++++.|+...+. ....|+..|+++.+-.+.... .++++.+..-
T Consensus 258 Rv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 258 RVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999998766 788888877777666665432 2356655443
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.7e-08 Score=98.25 Aligned_cols=224 Identities=17% Similarity=0.118 Sum_probs=169.7
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
...|+ +.|+++....+++++...++.+.||+.... . |.+++..|.+|.+..+|.+.. -...|+.++.++
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-l-------r~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~ 411 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-L-------RPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHL 411 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-c-------cHHHhhccchHHHHHHhCCcc--cchhhhhhhhhh
Confidence 45566 999999999999999999999999854433 2 368999999999999998543 345789999999
Q ss_pred ccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH------------Hhh-
Q 007131 456 SVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL------------IFK- 521 (617)
Q Consensus 456 s~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~l------------l~~- 521 (617)
|.+++.+.++...++|+.+++.+-+ .+.++-......-.||+.+..|.+.+++..++..|++. ++.
T Consensus 412 S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 412 SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 9999999999999999999988655 45555555555556888877777777776676665532 211
Q ss_pred ----------------------cCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcC-CchhHHHHHHH
Q 007131 522 ----------------------WSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSC-KFEGVQEQAAR 577 (617)
Q Consensus 522 ----------------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~-~~~~~~~~a~~ 577 (617)
..+.++.....++++|+||+..+-....+.+ ...+|.+-.-|+.+ +.++++...+-
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 0124566788899999999988877777764 57789998887754 34677777777
Q ss_pred HHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 578 ~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++..++.+.+ -+..+..+|.|+.++++++...+
T Consensus 572 ~~GT~a~d~~----cA~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 572 ACGTMARDLD----CARLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred HhhhhhhhhH----HHHHhCccccHHHHHHHHHhhcc
Confidence 7887776433 24555678999999999998544
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.2e-08 Score=91.27 Aligned_cols=185 Identities=23% Similarity=0.197 Sum_probs=148.1
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHh
Q 007131 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEE 468 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~ 468 (617)
+.+.+.+..|+.-|..++..=|.. ..++..|++..++..+++.+..+|+.|+++|+.+++ ++...+.+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnA--------ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNA--------NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhH--------HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 346777888988888886543333 478999999999999999999999999999999999 67789999999
Q ss_pred CCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc
Q 007131 469 GGINILAVLARSMN-RLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC 546 (617)
Q Consensus 469 ~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 546 (617)
||.+.|+.++.+.+ ..++..|..|+.+|-.+. .....+...+|...|..+|.. .+.+..+++.|+..+..|...+..
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhh
Confidence 99999999998754 467799999999999755 688888899999999999976 557788999999999999865544
Q ss_pred hHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 547 SMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 547 ~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...+.. .++...+..+..+. +.++.+.|..++..+..
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 333544 44444455555555 47888888887776654
No 42
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=2.4e-09 Score=124.01 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=23.8
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+++|++|++++|.++.. ++..+.++++|+.|++++|....
T Consensus 282 ~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred hccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCC
Confidence 455666666666554332 24445566777777777766543
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=7.3e-08 Score=91.03 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=94.5
Q ss_pred HHHHHHhCCCceEEEecCCCCccHHH---H---hcCCCccEEeccCCCC--CCHHH------HHHHHhcCCCcceEEEcC
Q 007131 95 AASLASRCMNLQKLRFRGAESADSII---H---LQARNLRELSGDYCRK--ITDAT------LSVIVARHEALESLQLGP 160 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~~~~~~---~---~~~~~L~~L~l~~~~~--~~~~~------l~~i~~~~~~L~~L~l~~ 160 (617)
+.........++.++|+|+++..... . ...++|+..++++-.. ..+.. +......||+|++|+|+-
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33344444556666666665543211 1 1345566666554321 11111 222233566666666641
Q ss_pred CCCCCCCHH---HHHHHHhcCCCCCeeeccCccCCcHHHHHHHH------------hcCCCCceEeecCCCCCCHH----
Q 007131 161 DFCERITSD---AVKAIALCCPKLKKLRLSGIRDICGDAINALA------------KLCPNLTDIGFLDCLNVDEV---- 221 (617)
Q Consensus 161 ~~~~~i~~~---~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~------------~~~~~L~~L~l~~~~~~~~~---- 221 (617)
+-++.. ++..+..+|.+|++|.|.+| .++..+-..+. ...|+|+++....| .+.+.
T Consensus 102 ---NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~ 176 (382)
T KOG1909|consen 102 ---NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATA 176 (382)
T ss_pred ---cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHH
Confidence 133332 33344455666666666666 55444322211 12356666666655 33321
Q ss_pred ---HHhcCcCCCeecccCCCCCCHHHHHHH---HhcCCCCCeEEeccCCCC---HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 222 ---ALGNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVG---PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 222 ---~l~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.++.++.|+.+.+..+ .|...++..+ +.+||+|+.||+..|-++ ...+...+..+|+|+.|++++|..-+
T Consensus 177 ~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 2355566666666664 3433333222 245666666666665443 33444555556666666666665333
No 44
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.83 E-value=5.2e-09 Score=121.28 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=44.5
Q ss_pred CCCCceEeecCCCCCC--HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 204 CPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
+++|++|++++|.... ...+..+++|++|++++|. ++.. +......+++|++|++++|.++.. ++..+.++++|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 287 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLI 287 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcC
Confidence 4555555555552111 1334555666666666552 2211 122234566777777776654332 233344577777
Q ss_pred EEEccCCCCC
Q 007131 282 VLCALNCPVL 291 (617)
Q Consensus 282 ~L~l~~c~~~ 291 (617)
.|++++|...
T Consensus 288 ~L~Ls~n~l~ 297 (968)
T PLN00113 288 SLDLSDNSLS 297 (968)
T ss_pred EEECcCCeec
Confidence 7777777644
No 45
>PRK09687 putative lyase; Provisional
Probab=98.80 E-value=7.8e-08 Score=92.76 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=70.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.|.+.|.+.+..++..|+.+|..+. +...++.+.+++.+.++.+|..|+++|+.|...+.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~------------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG------------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC------------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 378888999999999999999988652 22345677888888899999999999998765332
Q ss_pred hHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcC
Q 007131 461 VAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~ 498 (617)
. ....++.|..+ ++++++.|+..|+.+|+++..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 1 12235666666 556778888888888888753
No 46
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.80 E-value=8e-08 Score=77.45 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred HHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch
Q 007131 424 VMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
+-..+.+..||.-.+.. +.+.++....-|+|.|+++-+-..+.+.++++.++..|..+++.+++.+.++|.|+|.++.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 34456677888877654 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVML 562 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~l 562 (617)
...|.+.+++|.++..+ ++..+.....|+..+..|+..+.. +..+.....+..+.+.
T Consensus 92 ~~~I~ea~g~plii~~l---ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVL---SSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHHHHHhcCCceEEeec---CCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999999999 567778889999999999965543 6777664444444443
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.73 E-value=6.7e-07 Score=89.86 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=161.2
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh-----CCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-----GGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-----~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
..++.++.. ..+++....+..+.-+...+ |.....+.+. ....+++++|...+..+...|+.+|..+
T Consensus 56 ~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-------~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 56 KTFVNLLSQIDKDDTVRYVLTLIDDMLQED-------DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 677888854 56777788877777775443 2223445543 5678889999888899999999999999
Q ss_pred ccchhhH-HHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVA-KAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~-~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
....... ......--++.+...+++. +...+..|+.+|.+|...++.|..+.+.++++.|+.+|.. .....++++.+
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~-~~~~~Ql~Y~~ 207 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN-ATLGFQLQYQS 207 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh-ccccHHHHHHH
Confidence 8632211 1000000234556666653 4667888889999999999999999999999999999975 33467899999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC---CCCccccccccCcHHHHHHHhc
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS---NSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
+-|+|-|+..++....+.+.+.++.++++++...-+++..-+..+|.|+...+.. .......+++.|..+ ++..|+
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 9999999998888777778899999999998876689999999999999974421 112334556666544 444444
Q ss_pred C
Q 007131 611 S 611 (617)
Q Consensus 611 ~ 611 (617)
.
T Consensus 287 ~ 287 (429)
T cd00256 287 Q 287 (429)
T ss_pred c
Confidence 3
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.4e-09 Score=101.87 Aligned_cols=207 Identities=19% Similarity=0.168 Sum_probs=141.6
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCcc--HH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD--SI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L 156 (617)
+.+.+.++.+........++.|++++.|+|+++-+.. .+ +...+|+|+.|+++.+... ...-...-..+++|+.|
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLKQL 202 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhheE
Confidence 4555666666554444788889999999999885432 22 3348999999999876521 11101111157899999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHH---HhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVA---LGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---l~~~~~L~~L~ 233 (617)
.|+ .| .++...+..+...||+|+.|.|.++..+....... +....|++|+|++|+.++.+- +..++.|.-|+
T Consensus 203 ~l~--~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 203 VLN--SC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred Eec--cC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 996 47 78888899999999999999999884332222211 123579999999998777653 36789999999
Q ss_pred ccCCCCCCH-----HHHHHHHhcCCCCCeEEeccCCCC-HHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 234 VAGTSNMKW-----GVVSQVWHKLPKLVGLDVSRTDVG-PITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 234 l~~~~~i~~-----~~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++.| .+++ .+.......+|+|++|++..|.+. +..+..+ ..+++|+.|.+-.++...+..
T Consensus 278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchhhhhhccccccccccc
Confidence 9886 3432 222333467899999999999873 4444433 347888888877666554443
No 49
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.71 E-value=6.5e-07 Score=86.45 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=145.1
Q ss_pred HHHHhhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 007131 422 EAVMKDG-GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWN 495 (617)
Q Consensus 422 ~~i~~~~-~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~n 495 (617)
+++.+.+ .+..++.++.+.+.+.+..+.-+++|++.+++++..+++.|.+..|+.+|.. ++.+++.+++.||+|
T Consensus 308 q~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 308 QKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 4566655 8899999999999999999999999999999999999999999999999865 456889999999999
Q ss_pred hcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH-hCCHHHHHHHHhcCCchhHHH
Q 007131 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL-AGGVHALVMLARSCKFEGVQE 573 (617)
Q Consensus 496 L~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~-~~~~~~L~~ll~~~~~~~~~~ 573 (617)
+.....++..+...|..+.++..++. .++.++..-++.++.+-...+ ...++.+ ...+..|++.-++++...+.-
T Consensus 388 l~IPv~nka~~~~aGvteaIL~~lk~---~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 388 LMIPVSNKAHFAPAGVTEAILLQLKL---ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred ccccCCchhhccccchHHHHHHHHHh---cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 99999999999999999999999964 677888888898888754333 2333332 234566777777776666666
Q ss_pred HHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..-+.+.-+-.++.-. .....+...|+|+..|.++...
T Consensus 465 ESnRll~~lIkHs~~k-dv~~tvpksg~ik~~Vsm~t~~ 502 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYK-DVILTVPKSGGIKEKVSMFTKN 502 (604)
T ss_pred hhhHHHHHHHHhhHhh-hhHhhccccccHHHHHHHHHHh
Confidence 6666666665543321 1334555788899999877654
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.8e-07 Score=93.18 Aligned_cols=216 Identities=19% Similarity=0.087 Sum_probs=168.3
Q ss_pred HHHHHhhccC-CHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-
Q 007131 382 GLLLSLMQST-QEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV- 457 (617)
Q Consensus 382 ~~l~~~l~~~-~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~- 457 (617)
..|+.-+... ++..|..|+.-|+.+-.. .++.. .-+--...+|.|+.+|+.+ +.+++..||++|.+|..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesL-------s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESL-------SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhh-------ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 5667777554 778888888777755433 33332 2334556789999999986 89999999999999998
Q ss_pred chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
-++....+++.++||.|++-|.. .-.++.|.++.||-.|+..+ -.++.+.|++...+..+.= -+-.+++.|+.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDF---FSi~aQR~Alai 317 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDF---FSIHAQRVALAI 317 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHH---HHHHHHHHHHHH
Confidence 67788889999999999987765 67789999999999999763 3466778999998888842 345789999999
Q ss_pred HHHhcc--CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 537 LANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 537 L~~l~~--~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
.+|+|. .++.-.-+++ .+|.|..+|...+ .+..+.++-++..++.......+...++...|.+....+|+...
T Consensus 318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHhcCCCccchHHHH--HHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 999995 3444555554 7899999998876 78999999999999876555555666777788888888887654
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-06 Score=82.11 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~l 518 (617)
.+.+-++.|..-|..+..+-++...+...||...++..+++.++++++.|+++|+..+. ++..+..+++.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999986 45889999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 519 IFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
+. .+.+..++.+|+.++.++-.+ .++...+...+|...|..++.++ .+...+..|+..+..|...... ....+
T Consensus 175 ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s---~~d~~ 249 (342)
T KOG2160|consen 175 LS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS---DEDIA 249 (342)
T ss_pred Hc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh---hhhHH
Confidence 97 466778899999999999976 56688899999999999999874 3478888899999999863222 22233
Q ss_pred cccCcHHHHHHHhcCCCC
Q 007131 597 QEAGALEALVQLTRSPHE 614 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~ 614 (617)
-..|....++.+..+.+.
T Consensus 250 ~~~~f~~~~~~l~~~l~~ 267 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDF 267 (342)
T ss_pred HHhhhhHHHHHHhhccch
Confidence 344555555555544433
No 52
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.56 E-value=6.5e-09 Score=104.08 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=88.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCc---HHHHHHHHhcCCCCceEeecCCCCCCH---HHH
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC---GDAINALAKLCPNLTDIGFLDCLNVDE---VAL 223 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~---~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l 223 (617)
+..|+.|+|+ + +.|.......+. .|++|++|+|+++ .++ ...+. ..+.|++|++++| .++. ..+
T Consensus 292 Lt~L~~L~lS--~-NaI~rih~d~Ws-ftqkL~~LdLs~N-~i~~l~~~sf~----~L~~Le~LnLs~N-si~~l~e~af 361 (873)
T KOG4194|consen 292 LTSLEQLDLS--Y-NAIQRIHIDSWS-FTQKLKELDLSSN-RITRLDEGSFR----VLSQLEELNLSHN-SIDHLAEGAF 361 (873)
T ss_pred cchhhhhccc--h-hhhheeecchhh-hcccceeEecccc-ccccCChhHHH----HHHHhhhhccccc-chHHHHhhHH
Confidence 4556666664 1 233333333333 3788888888876 443 33333 3467888888887 4443 456
Q ss_pred hcCcCCCeecccCCCC---CCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 224 GNVLSVRFLSVAGTSN---MKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 224 ~~~~~L~~L~l~~~~~---i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
..+++|+.|+++.|.- |.| ....+.+++.|+.|.+.+|++.... .+.+.+++.|++|+|.+|.+-+.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk~I~-krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLKSIP-KRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCceeeecc-hhhhccCcccceecCCCCcceee
Confidence 7889999999988621 223 3444567999999999999876554 56677899999999999986543
No 53
>PRK09687 putative lyase; Provisional
Probab=98.55 E-value=1.9e-06 Score=83.26 Aligned_cols=184 Identities=19% Similarity=0.099 Sum_probs=118.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhccch-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL-AKSWREGLQSEAAKAIANLSVNA- 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~- 459 (617)
+.+..+++++++.+|..|+++|..|...... ....++.|..+ ++++++.++..|+.+|+++....
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-------------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQLGMAKRC-------------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-------------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 6778888899999999999999987321100 12345777776 56678999999999999884311
Q ss_pred -------------------hhHHHHH----H---hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 460 -------------------KVAKAVA----E---EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 460 -------------------~~~~~i~----~---~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
..|...+ + ..+++.|+.+|+++++.++..|+.+|..+....+ .+++
T Consensus 124 ~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~ 195 (280)
T PRK09687 124 LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIRE 195 (280)
T ss_pred ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHH
Confidence 1111111 1 1236677777776667777777777776632211 3556
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS 593 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 593 (617)
.|+.+|. +.+..++..|+.+|..+- ...+++.|++.+.+++ ++..|+.+|.++-.
T Consensus 196 ~L~~~L~---D~~~~VR~~A~~aLg~~~----------~~~av~~Li~~L~~~~---~~~~a~~ALg~ig~--------- 250 (280)
T PRK09687 196 AFVAMLQ---DKNEEIRIEAIIGLALRK----------DKRVLSVLIKELKKGT---VGDLIIEAAGELGD--------- 250 (280)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHccC----------ChhHHHHHHHHHcCCc---hHHHHHHHHHhcCC---------
Confidence 6777773 466677777777776642 2246778888877643 56677777777732
Q ss_pred ccccccCcHHHHHHHhc-CCCCCC
Q 007131 594 AVGQEAGALEALVQLTR-SPHEGV 616 (617)
Q Consensus 594 ~~~~~~g~~~~L~~ll~-~~~~~v 616 (617)
.-+++.|.+++. +++..|
T Consensus 251 -----~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 251 -----KTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred -----HhHHHHHHHHHhhCCChhH
Confidence 135788888886 555443
No 54
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.55 E-value=1.4e-05 Score=80.47 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=132.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~ 460 (617)
..++.+++.++.-++..|+..|..++..+..+.. .....-...-+...|+.. +...+..|+.+|..|...++
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~-------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~ 176 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKME-------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE 176 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccc-------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch
Confidence 5667788888888999999999999765443311 111111223444555544 47788889999999999999
Q ss_pred hHHHHHHhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
.|..+.+.+|++.|+.+|+.. +..++..++-++|-|++.++....+.+.+.|+.++++++. +..+++.+-++.+|.
T Consensus 177 ~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--s~KEKvvRv~l~~l~ 254 (429)
T cd00256 177 YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--STKEKVIRIVLAIFR 254 (429)
T ss_pred HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--hhhHHHHHHHHHHHH
Confidence 999999999999999999873 4588999999999999998877777788999999999984 678899999999999
Q ss_pred HhccCC-------CchHHHHHhCCHHHHHHHH
Q 007131 539 NLAADD-------KCSMEVALAGGVHALVMLA 563 (617)
Q Consensus 539 ~l~~~~-------~~~~~i~~~~~~~~L~~ll 563 (617)
||...+ .....+++.|.++.+-.+.
T Consensus 255 Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 255 NLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 998643 1245666666655444444
No 55
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.53 E-value=1.8e-07 Score=109.00 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred cCCCCceEeecCCCCCCHH-HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDEV-ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
.+++|+.|++++|..++.- ....+++|++|++++|..+. .+....++|+.|+++++.++ .++..+..+++|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-----~~p~~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~ 872 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-----TFPDISTNISDLNLSRTGIE--EVPWWIEKFSNLS 872 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-----cccccccccCEeECCCCCCc--cChHHHhcCCCCC
Confidence 3455555555555433321 00134555555555554332 11222356777777776654 2455566788888
Q ss_pred EEEccCCCCCChh
Q 007131 282 VLCALNCPVLEEE 294 (617)
Q Consensus 282 ~L~l~~c~~~~~~ 294 (617)
+|++++|+.+...
T Consensus 873 ~L~L~~C~~L~~l 885 (1153)
T PLN03210 873 FLDMNGCNNLQRV 885 (1153)
T ss_pred EEECCCCCCcCcc
Confidence 8888888877654
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.41 E-value=8e-06 Score=79.25 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=124.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC-CHHHHHHHHhc-CCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG-GIRLLLDLAKS-WREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~-~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~ 459 (617)
+.++.++...+.-+...+.+++..++.....+.... +.. ....|...+++ .+.+....|+++|..+...+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~--------e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ 188 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELS--------ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD 188 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccch--------HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc
Confidence 778889988888887778889998887665553221 111 11344445555 57888899999999999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
+.|..++..+|+..++..+.+ .+-.++...+-++|-|++++...+.+...+.|+.|.+++. .+..++|.+-+++++
T Consensus 189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk--~~~KEKV~Rivlai~ 266 (442)
T KOG2759|consen 189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVK--ESTKEKVTRIVLAIF 266 (442)
T ss_pred chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999953 3557899999999999999988888888999999999998 467889999999999
Q ss_pred HHhccCCC
Q 007131 538 ANLAADDK 545 (617)
Q Consensus 538 ~~l~~~~~ 545 (617)
.|+...++
T Consensus 267 ~Nll~k~~ 274 (442)
T KOG2759|consen 267 RNLLDKGP 274 (442)
T ss_pred HHHhccCc
Confidence 99987663
No 57
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.41 E-value=5e-05 Score=77.84 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=141.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..|++++..++..++..++++|+|+...-...+ ..+.+.|+|+.+.+++.+.++.++..+.|+|+++..+.+.
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-------skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-------SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-------HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 889999988888899999999999986644432 5899999999999999999999999999999999996554
Q ss_pred HH--HHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 462 AK--AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 462 ~~--~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.. .....=+...++.+..+++++|++.+...|+||+.+. +.-.-+.+ ...+......++. ...++ +...-..-
T Consensus 495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~-a~~~p-i~ie~~~~ 572 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKI-AIGSP-ILIEFLAK 572 (678)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhh-ccCCc-eehhhHHH
Confidence 33 3333323466778888899999999999999998765 33333333 1223333333322 22332 22222222
Q ss_pred HHHhc-cCC-CchHHHHHhCCHHHHHHHH-------hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHH
Q 007131 537 LANLA-ADD-KCSMEVALAGGVHALVMLA-------RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (617)
Q Consensus 537 L~~l~-~~~-~~~~~i~~~~~~~~L~~ll-------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ 607 (617)
..++. ..+ ..+.++- |-++.++-.- +...+.....++.|.+.|+....++...+..+.--.|+.+....
T Consensus 573 ~~~l~~~~d~~~~~am~--~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~~n~i~e~~~k 650 (678)
T KOG1293|consen 573 KMRLLNPLDTQQKKAME--GIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLKLNCIWELNNK 650 (678)
T ss_pred HHHhccchhHHHHHHHH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcccchhhccccceechhhh
Confidence 33332 222 2233222 3333333211 12344788999999999999877777666666655565555443
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=3.8e-05 Score=80.02 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=168.7
Q ss_pred hcChHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ 454 (617)
+..|+.|++-+.+ .=.+-|+.|+.+|..+++. + +.-+...|+++|+..|+.. |+++...+...+.+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srk----------Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----------Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLI 89 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----------H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3445888888854 4567789999999988622 2 3445667789999999876 89999999999999
Q ss_pred hccchh-------h----------HHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchHHHHHh-cCChH
Q 007131 455 LSVNAK-------V----------AKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIAD-AGGVK 513 (617)
Q Consensus 455 ls~~~~-------~----------~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~-~g~i~ 513 (617)
+..+++ . .+.+.+ .+-|..++..+...+-.|+.+|...+.++-.. .+.+..+.. .-||.
T Consensus 90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS 169 (970)
T ss_pred HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence 998653 1 223333 45588888999888999999999999999643 367777766 78999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
.|+.+|. +..+.++-.|+-.|..|+.+.....+++. .+++..|...+.... .--|.+.+...|-||-.....
T Consensus 170 ~lmdlL~---DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S- 245 (970)
T KOG0946|consen 170 KLMDLLR---DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS- 245 (970)
T ss_pred HHHHHHh---hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc-
Confidence 9999995 46778888899999999988877666654 577888999886432 235888899999999986555
Q ss_pred CCccccccccCcHHHHHHHhcC
Q 007131 590 SNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+...+.+.+-||+|..+|..
T Consensus 246 --NQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 246 --NQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred --hhhHHhccccHHHHHhhcCc
Confidence 67788899999999988765
No 59
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.32 E-value=6.1e-07 Score=58.86 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=37.3
Q ss_pred CCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccc
Q 007131 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSS 82 (617)
Q Consensus 43 LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~ 82 (617)
||+|++..||.+++.+|+.+++.|||+|+.+...+..|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999988888753
No 60
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.32 E-value=8.7e-06 Score=83.19 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=120.6
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Cc
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GE 500 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~ 500 (617)
.+.+......+....-..+.+....|+-.+.+++.. ...+..+...+++++|++++..++..+...+.++|.|+.. .+
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 343333333333333445778888888888888874 3345556677889999999988888899999999999985 45
Q ss_pred chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHH-HhCCH-HHHHHHHhcCCchhHHHHHHHH
Q 007131 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA-LAGGV-HALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 501 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~~~~-~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
..|..+++.|||..+..++. +.+..++..+.|+|+++..+.+...+.. ..... ..+..+..++ +..|++.+...
T Consensus 452 ~~kskfl~~ngId~l~s~~~---~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fql 527 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLT---DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQL 527 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhc---CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHH
Confidence 89999999999999999995 5777899999999999998877644432 22333 4455565665 48999999999
Q ss_pred HHHHhcc
Q 007131 579 LANLAAH 585 (617)
Q Consensus 579 L~~l~~~ 585 (617)
|+|++..
T Consensus 528 lRNl~c~ 534 (678)
T KOG1293|consen 528 LRNLTCN 534 (678)
T ss_pred HHHhhcC
Confidence 9999863
No 61
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.30 E-value=1.6e-08 Score=102.07 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=102.5
Q ss_pred hCCCceEEEecCCCCccHHHHh--cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
+..+|+.|.|+++.....-... +..+|..|++++.. -|-..+..-...+.+|..+||+ |++++. +..-.-.+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS---~N~Lp~--vPecly~l 244 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS---ENNLPI--VPECLYKL 244 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc---ccCCCc--chHHHhhh
Confidence 3355777777776544322211 45566666666654 2222233334456688888885 555543 11112236
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHH-------
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVW------- 249 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~------- 249 (617)
++|+.|+|+++ .++.-.. -.....+|++|+++.| +++. +++..+++|+.|.+.+| .++.+++..=.
T Consensus 245 ~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhH
Confidence 78999999987 5654221 1223368888888887 4543 66777888888777665 33333321111
Q ss_pred ----------------hcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 250 ----------------HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 250 ----------------~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.-|+.|+.|.++.|.+ .++++.+.-++.|+.|++..++.+-
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCcc
Confidence 1366777777777642 2334444557777777777776653
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.28 E-value=2.8e-06 Score=68.73 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
++.|+.--.. .+.+.++....-|+|.|.++-|=..+.+.+++..+++.|. .+++.+++.+.+.|.|+|.++.++.-
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~---e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE---EQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh---cccHHHHHHhHHHHHhhccChHHHHH
Confidence 4555555444 6788999999999999999999999999999999999995 58889999999999999999999999
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|+++++++.++..+.+++ +.+...|+.++..|+.
T Consensus 95 I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPP-EITVHSAALFLQLLEF 128 (173)
T ss_pred HHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcC
Confidence 999999999999988875 7888889999999985
No 63
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=1.5e-07 Score=83.19 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHH-hcCcCCCeecccCCCCCCH-HHHHHH
Q 007131 173 AIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VAL-GNVLSVRFLSVAGTSNMKW-GVVSQV 248 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~~i~~-~~l~~l 248 (617)
.+...+.+|+.|+++++ .++. +..+. .+++|++|++++| .+++ .++ ..+++|++|.+++| .|.+ ..+..+
T Consensus 36 ~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L 109 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPL 109 (175)
T ss_dssp S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGG
T ss_pred chhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHH
Confidence 33333455555555555 3322 11111 2355555555555 2332 123 24555555555554 2211 111121
Q ss_pred HhcCCCCCeEEeccCCCCH--HHHHHHHhcCCCCCEEEcc
Q 007131 249 WHKLPKLVGLDVSRTDVGP--ITISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~--~~l~~~~~~~~~L~~L~l~ 286 (617)
..||+|+.|++.+|.++. .--..++..+|+|+.||-.
T Consensus 110 -~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 110 -SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 245555555555543321 1122334445555555543
No 64
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.27 E-value=1.4e-07 Score=64.31 Aligned_cols=43 Identities=35% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCccc
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWS 81 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~ 81 (617)
+|.+||+|++.+||++|+.+|+..++.|||+|+.+..+...|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3678999999999999999999999999999999987766664
No 65
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.25 E-value=4.1e-05 Score=87.04 Aligned_cols=191 Identities=26% Similarity=0.195 Sum_probs=116.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc---
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--- 458 (617)
+.|++.|+.+++.+|..|+.+|..+. ..++++.|++.|+++++.+|..|+.+|..+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~------------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~ 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT------------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc------------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc
Confidence 67888899999999999999988642 233567788888878888888888887766321
Q ss_pred ------------hhhHHHHHH------hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---------c--chHHHHHh-
Q 007131 459 ------------AKVAKAVAE------EGGINILAVLARSMNRLVAEEAAGGLWNLSVG---------E--EHKGAIAD- 508 (617)
Q Consensus 459 ------------~~~~~~i~~------~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---------~--~~~~~i~~- 508 (617)
+..|...++ .+....++..|.+.++.++..|+.+|..+... + +.|....+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~a 765 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKG 765 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHH
Confidence 111221211 12345666667777777777777777654211 1 11211111
Q ss_pred --------cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 509 --------AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 509 --------~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
...++.|..++. +.++.++..|+.+|..+... ...++.+...+.+++ ..|+..|+.+|.
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d-~~VR~~Aa~aL~ 832 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCP---------PDDVAAATAALRASA-WQVRQGAARALA 832 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCC-hHHHHHHHHHHH
Confidence 012345555553 34556666666666555221 011244666666654 778888888887
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.. ...++.|+.++.+++..||
T Consensus 833 ~l~~--------------~~a~~~L~~~L~D~~~~VR 855 (897)
T PRK13800 833 GAAA--------------DVAVPALVEALTDPHLDVR 855 (897)
T ss_pred hccc--------------cchHHHHHHHhcCCCHHHH
Confidence 7631 2346899999999988876
No 66
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.23 E-value=1.9e-07 Score=93.81 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=105.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH-HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS-IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
+.++++++++...-...+. ..|+|+.+++..+....- .......+|++|+|.++. |+...-..+ +..|.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhhhhh
Confidence 4678877766554333333 348899999887643321 111245678888888765 333222222 235677888885
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccC
Q 007131 160 PDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAG 236 (617)
Q Consensus 160 ~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~ 236 (617)
.+.++.-....... -+++++|+|+++ .|++-....+. .+.+|..|.++.| .++ ...++.+++|+.|++..
T Consensus 158 ---rN~is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 158 ---RNLISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred ---hchhhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccC-cccccCHHHhhhcchhhhhhccc
Confidence 22333321111111 247788888776 56554433333 2346777777766 333 24566677777777766
Q ss_pred CCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 237 TSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 237 ~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
| .|..... .-++++++|+.|.+..|++.--. .-.+-.+.++++|+|..|.
T Consensus 231 N-~irive~-ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 231 N-RIRIVEG-LTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred c-ceeeehh-hhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccch
Confidence 5 2321111 11255666676666666542110 1122346667777776664
No 67
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=1.4e-06 Score=101.70 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=36.3
Q ss_pred CCCceEEEecCCCCccHHHHh-cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++|+.|+|+++.....++.. .+++|++|++.+|..+.. +..-...+++|+.|+++ +|..+..-. . ...+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~--~c~~L~~Lp--~-~i~l~s 705 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMS--RCENLEILP--T-GINLKS 705 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCC--CCCCcCccC--C-cCCCCC
Confidence 445555555554322222111 345566666655543322 22223345556666663 354433211 0 013455
Q ss_pred CCeeeccCcc
Q 007131 181 LKKLRLSGIR 190 (617)
Q Consensus 181 L~~L~l~~~~ 190 (617)
|+.|++++|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 6666666553
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.21 E-value=3.1e-05 Score=88.00 Aligned_cols=200 Identities=25% Similarity=0.208 Sum_probs=137.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcc--cCCC----c-ccCCchhHHHHH------hhCCHHHHHHHHhcCCHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVV--INDE----N-ASIDCGRAEAVM------KDGGIRLLLDLAKSWREGLQSEA 448 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~--~~~~----~-~~~~~~~~~~i~------~~~~i~~Lv~lL~~~~~~~~~~a 448 (617)
+.|+..|..++++++..|+.+|..+.. .... . ..-++.-|...+ ..+....+++.|.++++.+|..|
T Consensus 655 ~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 655 PALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEA 734 (897)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHH
Confidence 788889988999999999888876631 1110 0 001233333332 12456788899999999999999
Q ss_pred HHHHHHhcc-----------chhhHHHH----HHhC-----CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 449 AKAIANLSV-----------NAKVAKAV----AEEG-----GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 449 ~~~L~~ls~-----------~~~~~~~i----~~~~-----~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
+.+|..+.. +++.|... ...+ +++.|..+++++++.++..|+.+|.++...+.
T Consensus 735 v~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~------- 807 (897)
T PRK13800 735 VRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPD------- 807 (897)
T ss_pred HHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-------
Confidence 999987531 12223222 2211 25788888888888888888888888754311
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.++.++..|. +.+..++..|+.+|..+. ....++.|+.++.+++ ..|+..|+.+|..+..
T Consensus 808 --~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~~~---- 867 (897)
T PRK13800 808 --DVAAATAALR---ASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPH-LDVRKAAVLALTRWPG---- 867 (897)
T ss_pred --hHHHHHHHhc---CCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCC-HHHHHHHHHHHhccCC----
Confidence 2355777784 467889999999998764 2345588999998875 8999999999998721
Q ss_pred CCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 589 NSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 589 ~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
+....+.|...+++++.+||
T Consensus 868 ---------~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 868 ---------DPAARDALTTALTDSDADVR 887 (897)
T ss_pred ---------CHHHHHHHHHHHhCCCHHHH
Confidence 12347778888888877765
No 69
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.6e-05 Score=79.98 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=162.8
Q ss_pred hcChHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 455 (617)
+.-+|.|+.+|+. .+.++...||++|.+|..-..... ..+++.++||.|++-|..- -.++-+.+..+|-.|
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~-------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i 282 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS-------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI 282 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh-------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 4445999999975 579999999999999976655543 4678999999999987653 678899999999998
Q ss_pred ccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+... -..+.++|++-..+..|.=-...+++.|+.+..|.|.. ++--.-++ .++|.|..+|. ..+.+..+.+
T Consensus 283 SR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs---~~D~k~ies~ 355 (1051)
T KOG0168|consen 283 SRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLS---YQDKKPIESV 355 (1051)
T ss_pred Hhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHh---hccchhHHHH
Confidence 8743 34788999998888888666778899999999999853 23223333 48999999995 4677889999
Q ss_pred HHHHHHhccC---CC-chHHHHHhCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHH
Q 007131 534 AGALANLAAD---DK-CSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (617)
Q Consensus 534 ~~~L~~l~~~---~~-~~~~i~~~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~ 606 (617)
+-|+..++.. ++ .-.++...|.+....+++.-.+ +..+.-....+|..+|...+- -...+.+.++...|.
T Consensus 356 ~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl---~~~tl~k~~I~~~L~ 432 (1051)
T KOG0168|consen 356 CICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL---LFRTLLKLDIADTLK 432 (1051)
T ss_pred HHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH---HHHHHHHhhHHHHHH
Confidence 9999888742 22 3566777888888888886542 125566677777777764222 345556778888888
Q ss_pred HHhcC
Q 007131 607 QLTRS 611 (617)
Q Consensus 607 ~ll~~ 611 (617)
.++..
T Consensus 433 ~il~g 437 (1051)
T KOG0168|consen 433 RILQG 437 (1051)
T ss_pred HHHhc
Confidence 88765
No 70
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=2.6e-06 Score=55.62 Aligned_cols=41 Identities=39% Similarity=0.418 Sum_probs=38.3
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
+++++..+++.|+++.|+++|++.++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 71
>PF05536 Neurochondrin: Neurochondrin
Probab=98.15 E-value=9.6e-05 Score=78.19 Aligned_cols=194 Identities=18% Similarity=0.140 Sum_probs=143.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-------CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 454 (617)
+.-+.+|+..+.+.+..++..+.++....+.. ...++.+.++=+.+.+-++|+++ ....+..|+.+|..
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~----~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDED----SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhh----HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 67788998888777888888999987665544 23335677888889999999873 35688999999999
Q ss_pred hccchhhH--HHHHHhCCHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 455 LSVNAKVA--KAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 455 ls~~~~~~--~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
++.+++.+ ..+ .+-||.|++++.+.+. ++...|..+|..++..++++..+++.|+++.|++.+.. .+...+
T Consensus 84 f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E 157 (543)
T PF05536_consen 84 FCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQME 157 (543)
T ss_pred HcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHH
Confidence 99987754 334 3349999999988777 99999999999999999999999999999999999952 556788
Q ss_pred HHHHHHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 532 RAAGALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
.|+.++.+++........--.. ..++.+.+.+... +...+-.++..|..+-...
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcC
Confidence 9999999987643321110111 1233344444433 2456666777777765533
No 72
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.13 E-value=1.1e-06 Score=93.26 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=77.1
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCC--CCCCHHHHhcCcCCCeecccCCCC--CCHHH-----HHHH--
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSN--MKWGV-----VSQV-- 248 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~--i~~~~-----l~~l-- 248 (617)
.|+.|.+.++ .+++.++..+. ++++|+.|++++| ..+.+..+.++..|++|++|||.. +.+.. +..+
T Consensus 360 ~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcC-cccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 4555666666 67777777554 5688888888887 345567778888888888888722 11111 1111
Q ss_pred ----------HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 249 ----------WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 249 ----------~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
...++.|+.+|++.|+++...+++.... |+|++||+++|..
T Consensus 438 hsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 1246889999999999998888877653 8999999999984
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2e-06 Score=79.58 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=114.2
Q ss_pred eEEEecCCCCcc----HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 106 QKLRFRGAESAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 106 ~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
.-|.+.+|.... ..+...+.+++.|+|..+..-....+..+.+.+|.|+.|+|+ |+.+.. .+..+.....+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls---~N~L~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS---CNSLSS-DIKSLPLPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc---CCcCCC-ccccCcccccce
Confidence 344455654432 234447889999999887633456688889999999999996 766653 244443345699
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC----CCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL----NVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
++|-|.+. .++........+..|.++.|+++.|. .+++++.... +.+++|.+..|...-+.....+.+-+||+.
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 99999987 78888888888888999999998872 2344444333 366666666665555555555666666666
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
.+.+..+.+....-.+-...+|.+-.|+++.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccc
Confidence 666655544333222333334444455555443
No 74
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=1.5e-06 Score=76.91 Aligned_cols=127 Identities=28% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhc
Q 007131 124 ARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKL 203 (617)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 203 (617)
+..+++|+|.++. ++. +..+...+.+|+.|+|+ ++ .++. +..+. .+++|++|+++++ .++.-+ ..+...
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls--~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLS--NN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKN 86 (175)
T ss_dssp ---------------------S--TT-TT--EEE-T--TS---S----TT-----TT--EEE--SS----S-C-HHHHHH
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECC--CC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHh
Confidence 3456666666654 433 23333345677777774 23 4432 22222 2577777777776 454311 123335
Q ss_pred CCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHH-HHHHhcCCCCCeEEecc
Q 007131 204 CPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV-SQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l-~~l~~~~~~L~~L~l~~ 262 (617)
+|+|++|.+++| .+.+ ..+..+++|+.|++.+|+-...... ..+...+|+|+.||-..
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 677777777776 3433 3456777777777777643322222 34446678888876655
No 75
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.10 E-value=5.6e-05 Score=74.08 Aligned_cols=165 Identities=22% Similarity=0.267 Sum_probs=126.7
Q ss_pred hcChHHHHHhhccCCH--HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 454 (617)
+.|+..|+.|+.+.+. +++.+|...|-.+... +| ++.++..| +..++.+.+.. .++.++..+.+|.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN-------~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--EN-------RDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hh-------hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 3455788999988664 4588888888875422 23 35777777 55666555543 57888999999999
Q ss_pred hccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 455 LSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 455 ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
+..+ ++.+..+++.||++.++--.+..++.+...++.+|.|.+-.. +.+..|++..+-+=|..+- .+.++-++.
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA---~skDel~R~ 325 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA---FSKDELLRL 325 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh---cchHHHHHH
Confidence 9995 557899999999999998898999999999999999998543 7888999877776676666 345667888
Q ss_pred HHHHHHHHhccCCCchHHHHHhCC
Q 007131 532 RAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
.|+-+++-|+.+.+....+...|.
T Consensus 326 ~AClAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 326 HACLAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHHHHHhhhhhhhhhhHHHhhccc
Confidence 999999999988777666655554
No 76
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.05 E-value=9.8e-05 Score=72.43 Aligned_cols=180 Identities=26% Similarity=0.258 Sum_probs=137.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCH--HHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcC
Q 007131 422 EAVMKDGGIRLLLDLAKSWRE--GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~ 498 (617)
+.+...|++..|++++..++. .++..|+++|-.+.. .++++.++..| ...++.+.+. ..++.....+++|.++=.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 467788999999999999864 458889988877644 45677787775 6777777665 556888899999999975
Q ss_pred Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC--CchHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 499 GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD--KCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 499 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
.+ +.++.+++.|++..++--.+. .++.+.+.++-+|+|++.+. +.+..|++..+.+.|.-+..+.+ +-++..|
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rR---t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD-el~R~~A 327 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRR---TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD-ELLRLHA 327 (832)
T ss_pred hhHHHHHHHHhhcccchheeeccc---CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH-HHHHHHH
Confidence 44 788999999999998776754 56899999999999999654 45888999888899988877764 7899999
Q ss_pred HHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 576 ~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
|-+.+.|+...+ ....+...|.+..+--++.+
T Consensus 328 ClAV~vlat~KE----~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 328 CLAVAVLATNKE----VEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHHHhhhhhhhh----hhHHHhhccchhhhhhhhhc
Confidence 999999987332 23344445544433334433
No 77
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00015 Score=67.67 Aligned_cols=193 Identities=19% Similarity=0.129 Sum_probs=134.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
-.+++++++.++.++..|...+..|+.. .... -.-.+...++.+.+++....+ -+.|+.++.|+|.++..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~------~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQS------LSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhh------hccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence 4678999999999999999999998755 1110 011244567888889887666 67899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--c----CChHHHHHHHhhcCCCCH-HHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--A----GGVKALVDLIFKWSSGGD-GVLERAA 534 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~----g~i~~L~~ll~~~~~~~~-~~~~~a~ 534 (617)
+..+.+. -++.++..+.++........+.+|.||+..++....+.. . .++..++...-+ ++.+. .-....+
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d-~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD-KSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC-cccccccchhHHH
Confidence 8888877 677777777766556778889999999998865554432 2 345555444433 23332 2345677
Q ss_pred HHHHHhccCCCchHHHHHhCCHHH-HHHHHhcCCchhHH-HHHHHHHHHHhccCC
Q 007131 535 GALANLAADDKCSMEVALAGGVHA-LVMLARSCKFEGVQ-EQAARALANLAAHGD 587 (617)
Q Consensus 535 ~~L~~l~~~~~~~~~i~~~~~~~~-L~~ll~~~~~~~~~-~~a~~~L~~l~~~~~ 587 (617)
-++.||+..+.+|.-+.....++. ...-+.+.+ ..++ ...+++|.|.|.+..
T Consensus 154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhhccch
Confidence 899999999999988877653322 112222333 3444 458999999998544
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=9.1e-06 Score=74.35 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=106.3
Q ss_pred HhCCCceEEEecCCCCccHHH------HhcCCCccEEeccCCCCCCHHH-------HHHHH-----hcCCCcceEEEcCC
Q 007131 100 SRCMNLQKLRFRGAESADSII------HLQARNLRELSGDYCRKITDAT-------LSVIV-----ARHEALESLQLGPD 161 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~-------l~~i~-----~~~~~L~~L~l~~~ 161 (617)
-.||+++.++|+.+.|...++ ..+...|++|.+++|. +...+ +..+. ..-|.|+.+..+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-- 165 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-- 165 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec--
Confidence 357888888888776543221 1266788888888875 32211 22221 245678888776
Q ss_pred CCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHH----hcCCCCceEeecCCCCCCHHH-------HhcCc
Q 007131 162 FCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALA----KLCPNLTDIGFLDCLNVDEVA-------LGNVL 227 (617)
Q Consensus 162 ~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~~-------l~~~~ 227 (617)
.+.+.+.... .....-.+|+++.+..+ .|..+++..++ .++++|+.|++.+| ..|..+ +...+
T Consensus 166 -rNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~ 242 (388)
T COG5238 166 -RNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWN 242 (388)
T ss_pred -cchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccc
Confidence 2233322222 22232357888888877 67777665554 45788888888887 344322 24456
Q ss_pred CCCeecccCCCCCCHHHHHHHH-----hcCCCCCeEEeccCCCCHH-----HHHHHHh-cCCCCCEEEccCCCCCChh
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVW-----HKLPKLVGLDVSRTDVGPI-----TISRLLT-SSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~-----~~~~~L~~L~l~~~~~~~~-----~l~~~~~-~~~~L~~L~l~~c~~~~~~ 294 (617)
.|+.|.+..| -++..+...+. ...|+|..|...++..... .++.+.+ ..|-|..|.+.+|.+-.+.
T Consensus 243 ~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 243 LLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 7788888887 34444443333 2457777777777543221 2222222 3555666666665544333
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.98 E-value=0.00017 Score=70.30 Aligned_cols=224 Identities=14% Similarity=0.090 Sum_probs=154.9
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCccc-CCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENAS-IDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.++.. ..++....++..+--+-..+..... +++. ..-...-.-+..+.+|...+.-+...+.++++.++..-
T Consensus 68 ~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~--a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 68 KTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDY--AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHH--HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 667777754 3455556666655554322211100 0000 00012233678899999999999988999999988743
Q ss_pred hhHHHHHHhCC-HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~~~i~~~~~-i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
..+....+... ...|-.++++ .+.+....|+.+|..+...+++|-.++..+|+..++..+.. ...+-++++..+-|+
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s-~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS-TKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc-cCcchhHHHHHHHHH
Confidence 32222211111 2334455555 66677888999999999999999999999999999999953 556778999999999
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc---ccccccCcHHHHHHH
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS---AVGQEAGALEALVQL 608 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~~~g~~~~L~~l 608 (617)
|-|+.++...+.+...+.++.|...+++...++|..-+++++.|+...++.+...+ ..++..++.+.+-.+
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 99999999988888888899999999887668999999999999998664332222 445545544444433
No 80
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=3.8e-06 Score=77.79 Aligned_cols=181 Identities=18% Similarity=0.140 Sum_probs=112.9
Q ss_pred HHHHHhCCCceEEEecCCC--CccH--------HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCC
Q 007131 96 ASLASRCMNLQKLRFRGAE--SADS--------IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCER 165 (617)
Q Consensus 96 ~~l~~~~~~L~~L~l~~~~--~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~ 165 (617)
.-+...|.+|+.|.+++.. +..+ +-...+++|+.+.++.|. ...+..+...-|.|+++.+.. +.
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~---s~ 248 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHN---TT 248 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeec---cc
Confidence 3455567788999987652 1111 111267899999998886 333444444567888888852 11
Q ss_pred CCHHH-H---------------------HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH
Q 007131 166 ITSDA-V---------------------KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL 223 (617)
Q Consensus 166 i~~~~-l---------------------~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l 223 (617)
+++.. + .........|++|+|+++ .|+ .+..-.+..|.++.|++++|...+-..+
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nL 325 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRTVQNL 325 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceeeehhh
Confidence 11100 0 001112457899999987 443 2333345679999999999965555678
Q ss_pred hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC-HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 224 GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG-PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 224 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
..+++|++|++|+|..-. +..+...+.|+++|.+++|.+. ..++. .+-+|..|++++|.+-.
T Consensus 326 a~L~~L~~LDLS~N~Ls~---~~Gwh~KLGNIKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAE---CVGWHLKLGNIKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhcccceEeecccchhHh---hhhhHhhhcCEeeeehhhhhHhhhhhhH----hhhhheeccccccchhh
Confidence 999999999999974332 2334456778888888887652 23332 24467778888776433
No 81
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.91 E-value=1.7e-05 Score=51.71 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=36.7
Q ss_pred chhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 418 CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 418 ~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+++.+.+.|++|.|+++|++.++++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4566899999999999999999999999999999999973
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00051 Score=71.95 Aligned_cols=237 Identities=19% Similarity=0.146 Sum_probs=169.8
Q ss_pred HHhcChHHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcccCC---------chhHHHH-HhhCCHHHHHHHHhcCCHH
Q 007131 376 WLKQGAGLLLSLMQS--TQEDVQERAATGLATFVVINDENASID---------CGRAEAV-MKDGGIRLLLDLAKSWREG 443 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~---------~~~~~~i-~~~~~i~~Lv~lL~~~~~~ 443 (617)
++..|.+.+++.|+. .+++.-..++.++.++...++..-..+ ....+.+ ...+.|..|+..+...|-.
T Consensus 58 Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~ 137 (970)
T KOG0946|consen 58 VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFH 137 (970)
T ss_pred HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchh
Confidence 467788999999965 578899999999999988775211111 1111222 3568889999999999999
Q ss_pred HHHHHHHHHHHhccc--hhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHH
Q 007131 444 LQSEAAKAIANLSVN--AKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLI 519 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~--~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll 519 (617)
+|..|+..+.++-.+ .+.+..+.. .-||..|+.+|.+..+.++..|.-.|..|+.+...-++++. .+++..|..++
T Consensus 138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 456666654 67899999999998888999999999999988877777776 78999999999
Q ss_pred hhcC-CCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhc---CC------ch-hH--HHHHHHHHHHHhcc
Q 007131 520 FKWS-SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARS---CK------FE-GV--QEQAARALANLAAH 585 (617)
Q Consensus 520 ~~~~-~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~---~~------~~-~~--~~~a~~~L~~l~~~ 585 (617)
+... ....=|+..|+..|.||-.+ ..+...+.+.+.+|.|.++|.. ++ ++ ++ ...|..+++.+..-
T Consensus 218 eeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP 297 (970)
T KOG0946|consen 218 EEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP 297 (970)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC
Confidence 8611 12224788999999999865 4567777888889999987753 22 11 11 22245555555531
Q ss_pred CCCC---CCccccccccCcHHHHHHHhcCC
Q 007131 586 GDSN---SNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 586 ~~~~---~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+... .++..++...+++..|..++-++
T Consensus 298 ~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 298 GNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 1111 11223455678889998877665
No 83
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00053 Score=75.18 Aligned_cols=185 Identities=19% Similarity=0.153 Sum_probs=126.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH--hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM--KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
+.+-.++.+.+...|..|+.+|..++..+.+ .|. -...++.++..|+++.|.+|-.|+.++..++.+
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~----------~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSD----------VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 7777888999999999999999988655433 233 234566777788999999999999999999984
Q ss_pred -hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 459 -AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 459 -~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
++....- ....++.|+..+.+ .++.++.+|+.+|-|++..-.. ..+.- .+.+.+++..|. .++.+.+++.++
T Consensus 421 ~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~--~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 421 QPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLL--QSSKPYVQEQAV 496 (1075)
T ss_pred cHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHh--cCCchhHHHHHH
Confidence 3332222 23346788888877 6779999999999999865321 12211 344454444554 467889999999
Q ss_pred HHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 535 GALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 535 ~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.+++.+|...+. .+.. ...+|.|.+.+++.++++.+.....++-.+
T Consensus 497 taIasvA~AA~~--~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 497 TAIASVADAAQE--KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHhh--hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 999999853332 2222 235778888888765455555544444433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.8e-05 Score=69.44 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=44.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH---hcCcCC
Q 007131 153 LESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSV 229 (617)
Q Consensus 153 L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~~~~L 229 (617)
++.++-+ .+ .|...|+..+-. ++.++.|.+..|..+.|.++..+....|+|+.|++++|+.||+.++ ..+++|
T Consensus 103 IeaVDAs--ds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDAS--DS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecC--Cc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4445543 22 455555555533 5566666666665566666665555556666666666666665443 445555
Q ss_pred CeecccCC
Q 007131 230 RFLSVAGT 237 (617)
Q Consensus 230 ~~L~l~~~ 237 (617)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 55555543
No 85
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=74.79 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=134.7
Q ss_pred cccCCCCCCCCHH-HHHHHHHhCCCceEEEecCCCCccHHHH--hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 81 SSLDLRAHKCDIA-MAASLASRCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 81 ~~l~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
+.+|+..+.++++ -+..+.+..|.++.|+++.+.....+-. ...++|+.|.|.+.. ++..........+|.+++|+
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhh
Confidence 3455555566654 3667888889999999987765543322 367789999987765 77777777888888888887
Q ss_pred EcCCC---CCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCe
Q 007131 158 LGPDF---CERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRF 231 (617)
Q Consensus 158 l~~~~---~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~ 231 (617)
++- + --.+.++..+. ..+.+++|+..+|...-......+.+.+|++..+-+..|+.-+. .+...++.+-.
T Consensus 153 mS~-N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 153 MSD-NSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hcc-chhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 751 1 01222332222 24578888888885555556667888899999999999854333 34556677778
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH-----HHHHHHhcCCCCCEEEcc
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI-----TISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-----~l~~~~~~~~~L~~L~l~ 286 (617)
|+++.+.--++..+.++. .+|.|..|.++.+.+.+. -..-++..+++++.|+-+
T Consensus 229 LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888876444566666654 588999999988654332 222345567888888766
No 86
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0026 Score=62.52 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=169.7
Q ss_pred CCccchHHHHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCC--chhHHHHHhhCCHHHHHHHHhcCCHHH-
Q 007131 368 NPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASID--CGRAEAVMKDGGIRLLLDLAKSWREGL- 444 (617)
Q Consensus 368 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~- 444 (617)
.+.-.|.++.-.+++.++.+|.+++.++....+..|..|+-.+-..-+-. +.--..+++.+.++.|+.-+..-+..+
T Consensus 114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 34445555566677999999999999999999999999874432221110 111234567888888888776433333
Q ss_pred -----HHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHH
Q 007131 445 -----QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKAL 515 (617)
Q Consensus 445 -----~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L 515 (617)
...+..++-|+.. .++.+..+++.|-+..|+.-+.. +-+.-..+|..+|+-+-.++ +++.......|+..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 4455667777776 67788888888778887775554 33456778888988887665 588888889999998
Q ss_pred HHHHhh--cCC----CCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCC
Q 007131 516 VDLIFK--WSS----GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 516 ~~ll~~--~~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
+.-+.. .++ +..++.++...+|+.+-+.+++|..++...|++...-+++.. ...+..|..+|-+....+++.
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCch
Confidence 877643 122 245788999999999999999999999988888776677763 467778999999988855542
Q ss_pred CCccccccccCcHHHHHHH
Q 007131 590 SNNSAVGQEAGALEALVQL 608 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~l 608 (617)
.+...+++.+|...+..+
T Consensus 352 -~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 352 -PNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -HHHHHHHHHHhHHHHHHH
Confidence 245556677777766653
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=0.00011 Score=57.52 Aligned_cols=87 Identities=30% Similarity=0.370 Sum_probs=69.7
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 430 IRLLLDLA-KSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 430 i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
|+.|++.| +++++.+|..|+.+|..+- ....++.|+++++++++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899999 7779999999999998542 1134899999999999999999999999883 3
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
..+++.|.+++.+ +.+..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence 4588999999963 445667888888874
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=97.72 E-value=0.00076 Score=71.49 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=124.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~ 497 (617)
.++..+.+|+..+++-+-.+...+.++....+ .+..+.+.=|.+.+-++|+. +....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45677888988888888888888888887443 34567777788999999987 22456788999999999
Q ss_pred CCcchH--HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 498 VGEEHK--GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 498 ~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
..++.. ..++ +-||.|++.+.. .+...+...|..+|..++..++++..+++.|+++.|++.+.+. +...+.|
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~A 159 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIA 159 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHH
Confidence 987543 5554 589999999974 2235899999999999999999999999999999999998874 5889999
Q ss_pred HHHHHHHhccCC
Q 007131 576 ARALANLAAHGD 587 (617)
Q Consensus 576 ~~~L~~l~~~~~ 587 (617)
..++.+++...+
T Consensus 160 l~lL~~Lls~~~ 171 (543)
T PF05536_consen 160 LNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHhcc
Confidence 999999987433
No 89
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00082 Score=73.75 Aligned_cols=175 Identities=18% Similarity=0.076 Sum_probs=121.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchh--hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAK--VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~ 504 (617)
..+.+-.+|.+.+...|..|+.+|.-++..-. .+..+ ...++.++..|+++++.|+.+|+.++..++.+- +.+.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 34556667788999999999999998887433 22222 334788888899999999999999999999764 3333
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.. ..-.++.|+..+. ...++.++..|+.++-|++..-... .+.. .+.+..++.+|..+..+.+++.|+.+|..+
T Consensus 427 ~~-~e~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 427 KH-HERLPPALIALLD--STQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred HH-HHhccHHHHHHhc--ccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 32 3346677888886 4677899999999999998643331 1211 133443444444444589999999999999
Q ss_pred hccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+..... +..-.-.-.+|.|...+++.+
T Consensus 503 A~AA~~----~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 503 ADAAQE----KFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHhh----hhHhHHHHHHHHHHHHHhCCC
Confidence 974332 222222456888888888765
No 90
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.65 E-value=0.0017 Score=59.92 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=121.7
Q ss_pred HHHHHHHhCCCceEEEecCCCCccHHHHh------cCCCccEEeccCCCC--CCHHH---H---HHHHhcCCCcceEEEc
Q 007131 94 MAASLASRCMNLQKLRFRGAESADSIIHL------QARNLRELSGDYCRK--ITDAT---L---SVIVARHEALESLQLG 159 (617)
Q Consensus 94 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~~--~~~~~---l---~~i~~~~~~L~~L~l~ 159 (617)
++..+.. ...++.++|+|+.+....... .-++|+..+++.... ..|.. + ....-.||+|+..+|+
T Consensus 22 v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 3444444 577888999988876543222 346777777766532 22221 2 2233479999999996
Q ss_pred CCCCCCCCHH---HHHHHHhcCCCCCeeeccCccCCcHH-------HHHHHH-----hcCCCCceEeecCCCCCCH----
Q 007131 160 PDFCERITSD---AVKAIALCCPKLKKLRLSGIRDICGD-------AINALA-----KLCPNLTDIGFLDCLNVDE---- 220 (617)
Q Consensus 160 ~~~~~~i~~~---~l~~l~~~~~~L~~L~l~~~~~i~~~-------~l~~l~-----~~~~~L~~L~l~~~~~~~~---- 220 (617)
- +.++.. .+..+..+...|++|.+++| .+..- .+..++ ...|.|++.....|..-..
T Consensus 101 D---NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 101 D---NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred c---cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 2 233332 23334445678999999987 44321 122222 3358899888877632221
Q ss_pred --HHHhcCcCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEeccCCCC---HHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 221 --VALGNVLSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVG---PITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 221 --~~l~~~~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
..+.+=.+|+.+.+..| .|.+.++..++ ..|.+|+.||+..|-++ ...+...+...+.|+.|++.+|-..
T Consensus 177 ~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 12333368889888886 67777665554 57899999999997554 4455566667888999999999755
Q ss_pred Chh
Q 007131 292 EEE 294 (617)
Q Consensus 292 ~~~ 294 (617)
+..
T Consensus 256 ~~G 258 (388)
T COG5238 256 NEG 258 (388)
T ss_pred ccc
Confidence 444
No 91
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0013 Score=67.83 Aligned_cols=215 Identities=17% Similarity=0.091 Sum_probs=140.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|.++++.++.++.+|..|+..+.......... -...-..+++.+..+-.+.++++|...|.++..|-.....
T Consensus 177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--------l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--------LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred HHHHHHHhCCChhHHHHHHhhhhheeecCcHH--------HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 99999999999999999998888664443322 2334556778888888888999999999999998875554
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCC-------------
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGG------------- 526 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~------------- 526 (617)
|-.-.-.+.|+-++..-+..+++|...|+.....+|..+-.+..+.. ...+|.|+.-|.. ++.+
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Y-sd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVY-SDDDIILLKNNEEDESV 327 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcc-ccccHHHhcCccccccC
Confidence 43333344567777777788999999999999999998855555543 4566666654432 0000
Q ss_pred -----------------------------------------HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH--
Q 007131 527 -----------------------------------------DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA-- 563 (617)
Q Consensus 527 -----------------------------------------~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll-- 563 (617)
-.+++-.+.+|--|+. +.....++.++-++
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHH
Confidence 0122222222222221 22234444444444
Q ss_pred --hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 564 --RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 564 --~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+. .-.+++.+.-+|..++...-. -... .=...++.|++++.++.+-||
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p-~LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQ---GFVP-HLPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhh---hccc-chHHHHHHHHHHhccCcccee
Confidence 343 378999999999999862211 1111 012468899999999988887
No 92
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.60 E-value=0.00054 Score=73.93 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=52.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
++.+.+++.++++.+|..|+.++..+....++. +... .++.+.++|.+.++.++..|+.++..+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----------HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----------HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 377888888999999999999999986554332 3333 688999999999999999999999999
No 93
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.60 E-value=0.00027 Score=76.28 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=132.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~ 460 (617)
..+.+-+.++++.++-.|+.++.+++ . ..+. ...++.+.+++.++++.+|..|+.++..+... ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~-----~--------~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIR-----T--------PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH------S--------HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhc-----c--------cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH
Confidence 66777788899999999999999985 1 1233 23578899999999999999999999998873 33
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
. +... .++.+.++|.+.++.++..|+.++..+ ...+... .+. ...+..|..++ ...++-++..++.++..
T Consensus 148 ~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l---~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 148 L---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLL---SDPDPWLQIKILRLLRR 218 (526)
T ss_dssp C---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHH---TCCSHHHHHHHHHHHTT
T ss_pred H---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcc---cccchHHHHHHHHHHHh
Confidence 2 1111 378899999999999999999999999 2111111 111 12334444444 35677788888888888
Q ss_pred hccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 540 l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++........- ...++.+..++.+.+ +.+...|+.++.++.... . .-..+++.|+.++.++++
T Consensus 219 ~~~~~~~~~~~--~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~-------~--~~~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 219 YAPMEPEDADK--NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP-------E--LLQKAINPLIKLLSSSDP 281 (526)
T ss_dssp STSSSHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH-------H--HHHHHHHHHHHHHTSSSH
T ss_pred cccCChhhhhH--HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch-------H--HHHhhHHHHHHHhhcccc
Confidence 77544332211 345566677776653 677777777777775311 1 123567777777776554
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00037 Score=54.58 Aligned_cols=87 Identities=31% Similarity=0.274 Sum_probs=70.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
|+.|++.| +++++.++..|+.+|.++.. ..+++.|++++. ++++.++..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLK---DEDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHT---SSSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHc---CCCHHHHHHHHHHHHHh---------
Confidence 67899998 77899999999999995521 145889999994 58899999999999987
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
.....++.|.+++.++++..++..|+.+|.
T Consensus 59 -~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245588999999988766778999988874
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=7.4e-05 Score=65.71 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=71.0
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCC
Q 007131 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (617)
Q Consensus 126 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 205 (617)
.++.++-+++. |...++..+-. ++.|+.|.+. .|.++.|.++..+....++|+.|++++|+.||+.++..+.+ ++
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~--~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLA--NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhc-cchhhhheec--cccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hh
Confidence 34566666665 77777777654 7889999996 59899999999998888999999999999999999887774 58
Q ss_pred CCceEeecCCCCCCH
Q 007131 206 NLTDIGFLDCLNVDE 220 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~ 220 (617)
+|+.|.+.+-+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 999998887554443
No 96
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.55 E-value=0.00022 Score=46.43 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=36.6
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
++++..+.+.|+++.|+++|.+.++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999974
No 97
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=1.4e-05 Score=82.95 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=89.0
Q ss_pred HHHHHHhCCCceEEEecCCCC---ccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC-----------
Q 007131 95 AASLASRCMNLQKLRFRGAES---ADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP----------- 160 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~----------- 160 (617)
++.+....+.++.|.+-.... ..++..+.++.|+.|.|.+|..-+..++..+-. +|++|--..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~Sl~Al~~v~as 152 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNSLDALRHVFAS 152 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhccHHHHHHHHHH
Confidence 455555556666666654322 233444578999999999997444555544432 223322110
Q ss_pred ---CCCCCCCHH-------------HHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---H
Q 007131 161 ---DFCERITSD-------------AVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---V 221 (617)
Q Consensus 161 ---~~~~~i~~~-------------~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~ 221 (617)
..|+..... .+..-.+-+|.|++|+|+++ ++++ +. ..+.|++|++|||++| .+.. .
T Consensus 153 cggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~--v~-~Lr~l~~LkhLDlsyN-~L~~vp~l 227 (1096)
T KOG1859|consen 153 CGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTK--VD-NLRRLPKLKHLDLSYN-CLRHVPQL 227 (1096)
T ss_pred hccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhh--hH-HHHhcccccccccccc-hhcccccc
Confidence 001100000 01111122355666666665 3333 12 2234566666666665 2222 2
Q ss_pred HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 222 ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 222 ~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+|+ |+.|.+++|..-+-.++ .++.+|+.||+++|-+.+..=-..+..+..|+.|+|.+||.-
T Consensus 228 ~~~gc~-L~~L~lrnN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 SMVGCK-LQLLNLRNNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhhhh-heeeeecccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 233344 66666666532222222 245667777777765433222223334556666666666643
No 98
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.48 E-value=2.8e-06 Score=86.33 Aligned_cols=194 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCcc--HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD--SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
..+|++.++... +... ..+..++-.|+|+++.... .....++..|-.|+|+++. + ..+..-...+.+|++|+|
T Consensus 106 t~lDLShNqL~E-vP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-L--e~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 106 TILDLSHNQLRE-VPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-L--EMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred eeeecchhhhhh-cchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-h--hhcCHHHHHHhhhhhhhc
Confidence 455555544322 2222 2344778889999875432 1122245666677777665 2 122223334556777777
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC-CCCHHHHhcCcCCCeecccCC
Q 007131 159 GPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL-NVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~ 237 (617)
+. +-+....+..+.. +.+|..|++++... +-..+..-...+.||..++++.|. .+-++++-.+++|+.|++|+|
T Consensus 181 s~---NPL~hfQLrQLPs-mtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 181 SN---NPLNHFQLRQLPS-MTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CC---ChhhHHHHhcCcc-chhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 42 2232323333222 34555556665421 111111112234566667776652 122356666777777777765
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 238 ~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
.|+.-.+. .....+|++|+++.|+++ .++..+-.+++|+.|.+.++.
T Consensus 256 -~iteL~~~--~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 256 -KITELNMT--EGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred -ceeeeecc--HHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCc
Confidence 34321110 011234555555555432 122223334555555544443
No 99
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0015 Score=61.20 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=108.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
...+++++.+.+|.++..|+.-+..++.. ..+..... ...++.+.++++...+ .+.|+.+|.|++..+..+..+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 35788999999999999999999888877 33333322 2237888899887666 77889999999999999999988
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-------hCCHHHHHHHHhcCCch-hHHHHHHHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AGGVHALVMLARSCKFE-GVQEQAARALA 580 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~~~~~~L~~ll~~~~~~-~~~~~a~~~L~ 580 (617)
. .+..++..+- +....+....+.+|.||+..+.....+.. .|.+.....+..++... .-....+-++.
T Consensus 82 ~-~~k~l~~~~~---~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 82 D-LLKVLMDMLT---DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred H-HHHHHHHHhc---CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 7 6666777774 35567889999999999988776444432 22333333344443222 23344677888
Q ss_pred HHhccCCCC
Q 007131 581 NLAAHGDSN 589 (617)
Q Consensus 581 ~l~~~~~~~ 589 (617)
||+....++
T Consensus 158 nls~~~~gR 166 (353)
T KOG2973|consen 158 NLSQFEAGR 166 (353)
T ss_pred HHhhhhhhh
Confidence 888766664
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.43 E-value=0.011 Score=59.62 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=146.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~ 459 (617)
+.+..++-+++.+++..|.++++.+....+.- +.+...+.--.+++-|... +...|++|...++.+..-+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l--------~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESL--------QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH--------HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 44444554555899999999999875443222 4566666666667777654 4567889999998887654
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
.+...+ -.|.+..++.+....++..+..|..+|..++.. +=..+.+.||+..|++.+.+ +..++.+..+.++..
T Consensus 100 ~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 100 KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID---GSFSISESLLDTLLY 173 (371)
T ss_pred CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHHH
Confidence 433322 234478899999999999999999999999965 23456678999999999964 444588888899988
Q ss_pred hccCCCchHHHHHhCCHHHHHHHHhcC------Cch--hHHHHHHHHHHHHhccCCCCCCccccccc-cCcHHHHHHHhc
Q 007131 540 LAADDKCSMEVALAGGVHALVMLARSC------KFE--GVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTR 610 (617)
Q Consensus 540 l~~~~~~~~~i~~~~~~~~L~~ll~~~------~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~g~~~~L~~ll~ 610 (617)
+-..++.|.-+...--+..++.-+.+. ++. +....+..++..+-..=+| ......+ ..+++.|++.++
T Consensus 174 lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---Ll~l~~~~~~~lksLv~~L~ 250 (371)
T PF14664_consen 174 LLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---LLYLSMNDFRGLKSLVDSLR 250 (371)
T ss_pred HhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc---eeeeecCCchHHHHHHHHHc
Confidence 888777777666544456555533221 112 2334455555554443333 2222222 268999999999
Q ss_pred CCCCCCC
Q 007131 611 SPHEGVR 617 (617)
Q Consensus 611 ~~~~~vr 617 (617)
.+++++|
T Consensus 251 ~p~~~ir 257 (371)
T PF14664_consen 251 LPNPEIR 257 (371)
T ss_pred CCCHHHH
Confidence 8887664
No 101
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0017 Score=65.28 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=140.4
Q ss_pred chHHHHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHH
Q 007131 372 LDDFWLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAK 450 (617)
Q Consensus 372 ~~~~~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~ 450 (617)
+..++.+.++ ..++.++-+.+..+|.+..|+++.+..+++++-++ .....-++..++++..++...+|.....
T Consensus 465 L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf------~~Lakig~~kvl~~~NDpc~~vq~q~lQ 538 (743)
T COG5369 465 LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF------KFLAKIGVEKVLSYTNDPCFKVQHQVLQ 538 (743)
T ss_pred hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh------hhHHhcCHHHHHHHhcCcccccHHHHHH
Confidence 4455567777 88999998888899999999999999998887443 5667778999999999999999999999
Q ss_pred HHHHhccc----hhhHHHHHHhCC----HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hHHHHHh-cCChHHHHHHHh
Q 007131 451 AIANLSVN----AKVAKAVAEEGG----INILAVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIAD-AGGVKALVDLIF 520 (617)
Q Consensus 451 ~L~~ls~~----~~~~~~i~~~~~----i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~L~~ll~ 520 (617)
+|+|+..+ ++.++.+.+..- .+.|++.+...+|--.+..+-.|.++|..++ .+..+.+ ...+..+...|.
T Consensus 539 ilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 539 ILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 99999873 333443333322 3456666666676555556777777776554 4444443 334443333332
Q ss_pred h---------c-----------------------------------------CCCCHHHHHHHHHHHHHhccCCCc----
Q 007131 521 K---------W-----------------------------------------SSGGDGVLERAAGALANLAADDKC---- 546 (617)
Q Consensus 521 ~---------~-----------------------------------------~~~~~~~~~~a~~~L~~l~~~~~~---- 546 (617)
. + .+.+.+.-.+..|...|+....++
T Consensus 619 e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt 698 (743)
T COG5369 619 EFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT 698 (743)
T ss_pred HHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc
Confidence 1 0 002344556666777776643332
Q ss_pred -----hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 547 -----SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 547 -----~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
|.++..+.|+...+..+...++..+++.+-.+|.|+-
T Consensus 699 ratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 699 RATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred hhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 5667777777666666665556899999999999873
No 102
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.37 E-value=0.00012 Score=80.07 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|+.|++++| .++.-. ...++|+.|++++|. ++. + .....+|+.|++++|.++ .++..+.++++|+.|+
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-~l~s~L~~LdLS~N~-Lss--I---P~l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-VLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCC-cccCCC-CcccCCCEEEccCCc-CCC--C---CcchhhhhhhhhccCccc--ccChHHhhccCCCeEE
Confidence 57888888877 344210 123578888888873 431 1 122356888999988876 3566667799999999
Q ss_pred ccCCCCCCh
Q 007131 285 ALNCPVLEE 293 (617)
Q Consensus 285 l~~c~~~~~ 293 (617)
+++|+....
T Consensus 452 Ls~N~Ls~~ 460 (788)
T PRK15387 452 LEGNPLSER 460 (788)
T ss_pred CCCCCCCch
Confidence 999986543
No 103
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.26 E-value=0.00027 Score=77.26 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHH
Q 007131 442 EGLQSEAAKAIANLSVNAKVAKAVAE 467 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~~~~~i~~ 467 (617)
++.+......|..++.+++.|+.+..
T Consensus 546 ~~~~~~V~~~l~~~~~~~~LR~~~F~ 571 (788)
T PRK15387 546 AGFKAQISSWLAQLAEDEALRANTFA 571 (788)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55677777788888888877776654
No 104
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.25 E-value=0.0008 Score=43.73 Aligned_cols=38 Identities=42% Similarity=0.526 Sum_probs=34.6
Q ss_pred hHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 420 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.+..+.+.|+++.|++++.+.+++++..|+++|+||+.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45688899999999999998899999999999999974
No 105
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.24 E-value=6.8e-05 Score=80.21 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=98.4
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+.|+.|.+.++. ++|..+. ++.++++|+.|+|++-+-..+++..+. .++.|++|+|+|+ .++. +..-...|
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTT--LPDTVANL 429 (1081)
T ss_pred HHHHHHHHhcCc-ccccchh-hhccccceeeeeecccccccCCHHHHh----chHHhHHHhcccc-hhhh--hhHHHHhh
Confidence 445556666654 6665444 445678899999963111334444433 3577889999988 4433 22233357
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC---CCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD---VGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~l~~~~~~~~~L~ 281 (617)
+.|++|...+|....-..+..++.|+.++++.| +++...+...... |+|++||++||- ++...+ ..+.++.
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l----~~l~~l~ 503 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL----KVLKSLS 503 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCcccccchhhh----HHhhhhh
Confidence 888888888875444457788999999999886 6765555443322 899999999963 333333 2355555
Q ss_pred EEEccCCCCCChhHHHHH
Q 007131 282 VLCALNCPVLEEENNISA 299 (617)
Q Consensus 282 ~L~l~~c~~~~~~~~~~~ 299 (617)
..++.-+ ...+....++
T Consensus 504 ~~~i~~~-~~~d~~~n~~ 520 (1081)
T KOG0618|consen 504 QMDITLN-NTPDGNVNAF 520 (1081)
T ss_pred heecccC-CCCcccccee
Confidence 5555544 3444443433
No 106
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.22 E-value=0.00031 Score=77.12 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|. ++. +.. .-+++|+.|++++|.++. ++..+ .++|+.|++++|...
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCC
Confidence 567777777762 321 111 123678888888877652 22222 357888888887654
No 107
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.18 E-value=0.03 Score=57.09 Aligned_cols=117 Identities=15% Similarity=-0.018 Sum_probs=78.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++.+...++.++..++.+|..+ ...+..+.|+.+|++.++.++..++.++..
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i------------------~~~~a~~~L~~~L~~~~p~vR~aal~al~~------- 143 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWL------------------GGRQAEPWLEPLLAASEPPGRAIGLAALGA------- 143 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcC------------------CchHHHHHHHHHhcCCChHHHHHHHHHHHh-------
Confidence 5555566555555666666666532 122344667777777777777666655554
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
......+.+..+|++.++.++..|+.+|..+-.. ..++.|...+ .+.++.++..|++++..+
T Consensus 144 ----r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al---~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 ----HRHDPGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYL---RDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHH---cCCCHHHHHHHHHHHHHc
Confidence 1122356788888888899999999988877543 4667777777 467888998888888666
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.18 E-value=0.00082 Score=47.10 Aligned_cols=55 Identities=22% Similarity=0.066 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
+.+|..|+++|++++........-.....++.|+.+|++++++|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5689999999999987554444434566799999999999999999999999876
No 109
>PTZ00429 beta-adaptin; Provisional
Probab=97.18 E-value=0.014 Score=64.04 Aligned_cols=173 Identities=18% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+..++++.+++.++++-+...+.+.+....+. .+ -++..|.+=+.++|+.+|..|.++++.+-... .
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel---------al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i 137 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK---------AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-V 137 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH---------HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-H
Confidence 67778888889999888888888876443321 11 24567777778889999999999888764422 2
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
-+. .++.+.+.|.+.++-|++.|+.++..+-.... ..+.+.|.++.|.++| .+.++.++.+|+.+|..+.
T Consensus 138 ~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL---~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELL---NDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 222 25667788888999999999999999854322 2334567888899988 4588899999999999998
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHH
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL 579 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L 579 (617)
..++.+..+ ..+.+..|+..+...+ +..+.....+|
T Consensus 208 ~~~~~~l~l-~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL 243 (746)
T PTZ00429 208 DYGSEKIES-SNEWVNRLVYHLPECN-EWGQLYILELL 243 (746)
T ss_pred HhCchhhHH-HHHHHHHHHHHhhcCC-hHHHHHHHHHH
Confidence 654432222 2233444454444332 44444444444
No 110
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.07 E-value=0.00021 Score=66.54 Aligned_cols=133 Identities=22% Similarity=0.228 Sum_probs=90.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH-hcCcC
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL-GNVLS 228 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l-~~~~~ 228 (617)
...|+++||++ . .|+ .+..-..-.|.++.|+++++ .+.. +..+ ...++|..||+++|..-.-++. ..+-+
T Consensus 283 Wq~LtelDLS~--N-~I~--~iDESvKL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSG--N-LIT--QIDESVKLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccc--c-chh--hhhhhhhhccceeEEecccc-ceee--ehhh-hhcccceEeecccchhHhhhhhHhhhcC
Confidence 45789999963 2 332 23343445799999999988 4432 2222 2568999999999843333565 46789
Q ss_pred CCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++.|.+++|.--+-.++. .+-+|..||+.+|++..-.-..-+.++|.|+++.+.+||......
T Consensus 354 IKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred EeeeehhhhhHhhhhhhH----hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999999987322223333 345699999999987543334556789999999999998665443
No 111
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.037 Score=56.43 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=128.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCH-HHHHHHHHH---HHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKA---IANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~~---L~~ls~ 457 (617)
+.++.-+++.++.+|..|+.-+.......... ....-+|.+..+++.+.+..+ .+++.|..+ +..+..
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~--------~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD--------LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcc--------hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 77788888899999999988888776665544 244567777888888876644 344433322 333333
Q ss_pred chhhHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.+..++. .+.|. ++.+.+.+.++..+++..+..-+..|=....++.........+.|+.-| ++.++.+...++..
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL---sd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL---SDRSDEVVLLALSL 400 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh---cCchhHHHHHHHHH
Confidence 3333333 44444 6888888988999999999888888876666676666677888999999 45788999999999
Q ss_pred HHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 537 L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++++|..++...- -.++..|.+++...+ .-+...+..+++.||.
T Consensus 401 la~i~~s~~~~~~---~~fl~sLL~~f~e~~-~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 401 LASICSSSNSPNL---RKFLLSLLEMFKEDT-KLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHhcCcccccH---HHHHHHHHHHHhhhh-HHHHhhhhHHHHHHHH
Confidence 9999987665411 123344555555543 4555566667776664
No 112
>PTZ00429 beta-adaptin; Provisional
Probab=97.01 E-value=0.025 Score=62.15 Aligned_cols=178 Identities=15% Similarity=0.022 Sum_probs=122.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+.+-+.+.++.+|-.|++.+.++- . ..+. .-.++.+.+.+.+.++-+|..|+-++.++-...+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir-~------------~~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIR-V------------SSVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC-c------------HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 66677777889999999988888752 1 1122 2345677888888999999999999999866333
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
+.+.+.|-++.|.++|.+.++.|+.+|+.+|..+.........+ ..+.+..|+..+. .-++-.+...+.+|....
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLP---ECNEWGQLYILELLAAQR 247 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhh---cCChHHHHHHHHHHHhcC
Confidence 23444566788999999999999999999999997543222222 2345566666663 344555666666664422
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+...... ...+..+...+++.+ +.|...|+.++.+++.
T Consensus 248 --P~~~~e~--~~il~~l~~~Lq~~N-~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 248 --PSDKESA--ETLLTRVLPRMSHQN-PAVVMGAIKVVANLAS 285 (746)
T ss_pred --CCCcHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcC
Confidence 2222221 235566777777875 8999999999999975
No 113
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.01 E-value=0.016 Score=49.65 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHHhCCHHHHHHHHhcCC------HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMN------RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
...+...||++.|++++.++. .++..+++.+...|-..............|.+++..+.. +..+..+...|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHH
Confidence 456788999999999999865 377888999999988776666677777788888888864 4446789999999
Q ss_pred HHHHhccCCCchHHHHHhCC-HHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 536 ALANLAADDKCSMEVALAGG-VHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~-~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
.|-++..+++.....+.... ++.|+..|+.++ .+++.+|.+.+-.|-..++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCC
Confidence 99999998888555555444 899999999875 8999999999998877554
No 114
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.00 E-value=0.0016 Score=63.41 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=64.4
Q ss_pred HHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCC-------HHHHHHH--------------HhcCCCCC
Q 007131 200 LAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMK-------WGVVSQV--------------WHKLPKLV 256 (617)
Q Consensus 200 l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~-------~~~l~~l--------------~~~~~~L~ 256 (617)
+...+++|..|++++| .+.+ ..+..+..|+.|+++.+..-. -+.+..+ ..+..+|.
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 3455689999999987 3444 344566779999998872110 0111111 13567899
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.||+..|++ ..++.++++|.+|++|.++++++....
T Consensus 509 tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 509 TLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred eeccCCCch--hhCChhhccccceeEEEecCCccCCCH
Confidence 999999864 677889999999999999999977443
No 115
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.089 Score=52.15 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=139.0
Q ss_pred HhcCh-HHHHHhhccCCHHH------HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHH
Q 007131 377 LKQGA-GLLLSLMQSTQEDV------QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSE 447 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~------~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~ 447 (617)
.+.++ +.|++-+..-++.+ ..+++..+-|++.. ++.....+++.|.+..|+.-+... -..-...
T Consensus 173 vdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~-------r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y 245 (536)
T KOG2734|consen 173 VDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEV-------RPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY 245 (536)
T ss_pred HhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc-------cHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH
Confidence 34444 66776664323222 34556666666533 344556778888877777755432 3455778
Q ss_pred HHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhc---C------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 448 AAKAIANLSVN-AKVAKAVAEEGGINILAVLARS---M------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 448 a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~---~------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
|..+++.+-.+ .+++..+...+||..+++-+.- . ..+..++.-.+|+.+-..++++..+....|++...-
T Consensus 246 asEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~L 325 (536)
T KOG2734|consen 246 ASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNL 325 (536)
T ss_pred HHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHH
Confidence 88888888885 4488889999999999887752 2 236778888888888889999999999999988766
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCC---chHHHHHhCCHHHHHHHHh-c--------CCchhHHHHHHHHHHHHhc
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDK---CSMEVALAGGVHALVMLAR-S--------CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~~~~~~L~~ll~-~--------~~~~~~~~~a~~~L~~l~~ 584 (617)
+++ .....+..++++|-....+++ +...+++..|...++.++- . ...++..++.+..|+.+-.
T Consensus 326 mlr----~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 326 MLR----EKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHH----HHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 664 244567788999998887776 4778888888888777443 2 2235778888888887754
No 116
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.99 E-value=0.0035 Score=49.44 Aligned_cols=65 Identities=31% Similarity=0.379 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCC-cchHHHHHh
Q 007131 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVG-EEHKGAIAD 508 (617)
Q Consensus 444 ~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~-~~~~~~i~~ 508 (617)
++...+++|+|+++ ++++++.+.+.||++.++....- .+|-+++.|..++.||+.+ ++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45677899999999 67899999999999999998653 6889999999999999965 478877765
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.97 E-value=0.017 Score=58.89 Aligned_cols=148 Identities=18% Similarity=0.054 Sum_probs=107.8
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.++..+. .+++++...++.++... . ...++..|++.|.+.++.++..++.+|..
T Consensus 57 ~~L~~aL~~d~~~ev~~~aa~al~~~---~---------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~------ 112 (410)
T TIGR02270 57 ELLVSALAEADEPGRVACAALALLAQ---E---------------DALDLRSVLAVLQAGPEGLCAGIQAALGW------ 112 (410)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHhcc---C---------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhc------
Confidence 77888884 45667666555444421 1 11137899999999999999999999974
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+...+..+.|+.+|++.++.++..++.++.... ....+.+..+|. +.++.++..|+++|..+
T Consensus 113 ----i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~---d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 113 ----LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALT---HEDALVRAAALRALGEL 174 (410)
T ss_pred ----CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhc---CCCHHHHHHHHHHHHhh
Confidence 333445788999999999999988887776621 235678888894 58889999999999987
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
-. ...++.|...+.+.+ +.|+..|++++..+
T Consensus 175 ~~----------~~a~~~L~~al~d~~-~~VR~aA~~al~~l 205 (410)
T TIGR02270 175 PR----------RLSESTLRLYLRDSD-PEVRFAALEAGLLA 205 (410)
T ss_pred cc----------ccchHHHHHHHcCCC-HHHHHHHHHHHHHc
Confidence 42 345566776776664 88998888887655
No 118
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0071 Score=60.99 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCC
Q 007131 447 EAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 447 ~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
.++..|..++.. .-.|..+.++..++.|+++|..++..+.--+..++.|+... +..+..+.+.|.+..|+.++. +
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~---s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM---S 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh---c
Confidence 334445555543 23577788888899999999886666667788899998754 467899999999999999995 4
Q ss_pred CCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccccc
Q 007131 525 GGDGVLERAAGALANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (617)
.+..++.+..|+++.+-.+.+. +-+....-++..++.+..+++ -.+++.+..+|+|++.++..+...+.+..++
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEec
Confidence 5778999999999999987766 445567778899999988876 7999999999999998665543344444443
No 119
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00026 Score=65.36 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
.+.++|++++|. ++|.. +...+|.||.|.|+ .+.|+. +..+. .|.+|++|.|..+ .|.+-.-....++.
T Consensus 19 ~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLS---vNkIss--L~pl~-rCtrLkElYLRkN-~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLS---VNKISS--LAPLQ-RCTRLKELYLRKN-CIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCC-ccHHH---HHHhcccceeEEee---cccccc--chhHH-HHHHHHHHHHHhc-ccccHHHHHHHhcC
Confidence 466778888887 87754 34568899999996 335543 44444 4899999999876 55443222334578
Q ss_pred CCCceEeecCCCCCCHH-------HHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 205 PNLTDIGFLDCLNVDEV-------ALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~-------~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
|+|+.|.|..|+..... .+..+|+|+.|+ +..++.+.+..-
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~A 135 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEA 135 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHH
Confidence 99999999887655543 357788888874 345666665543
No 120
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.92 E-value=0.00062 Score=74.83 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|++|++++| .++. +.. ..+++|+.|++++| .++.-.-.-.++|++|++++|. ++.- -..+ .+.|+.|
T Consensus 325 ~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-Lt~L-P~~l---~~sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-LTNL-PENL---PAALQIM 393 (754)
T ss_pred ccceeccccCC-cccc--CCh--hhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-CCCC-CHhH---HHHHHHH
Confidence 56777777776 3332 111 12368888888887 3442110113678888888873 3310 0111 1257888
Q ss_pred EeccCCCC--HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 259 DVSRTDVG--PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 259 ~l~~~~~~--~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++++|.++ +..++.+...++++..|++.+|++..
T Consensus 394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 88887664 23455666667889999999998653
No 121
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.89 E-value=0.044 Score=55.26 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 470 (617)
.+...+++|+..++.+....... .-...|.+.+++.+..+.++..+..|..+|+.++..++ +.+...||
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~---------~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG 148 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGP---------KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGG 148 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCc---------ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCC
Confidence 45667889999998876543221 22456788999999999999999999999999998432 27778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhc----CCCCH--HHHHHHHHHHHHh-ccC
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW----SSGGD--GVLERAAGALANL-AAD 543 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~--~~~~~a~~~L~~l-~~~ 543 (617)
+..|++.+.++..++.+..+.++-.+-..+..|.-+...--++.++.-..+. ..++. +-...+..++..+ -.+
T Consensus 149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW 228 (371)
T PF14664_consen 149 IRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW 228 (371)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC
Confidence 9999999988766788899999999999988888776644566666655442 11222 2233333333333 333
Q ss_pred CCchHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 544 DKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 544 ~~~~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.--.--.+ ..+++.|+..|+.+. ++++.....++..+
T Consensus 229 ~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dl 267 (371)
T PF14664_consen 229 PGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDL 267 (371)
T ss_pred CceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 322111111 145677777777664 66777777666643
No 122
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.019 Score=62.42 Aligned_cols=141 Identities=19% Similarity=0.174 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcc-chhhHHHHH----HhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 444 LQSEAAKAIANLSV-NAKVAKAVA----EEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 444 ~~~~a~~~L~~ls~-~~~~~~~i~----~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
-...+..+|.|+.. +++....+. -.|-++.+...+.. .++.++..|+.++.-++.+.+.-..+.+.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45678889999887 665544443 25567888888776 6778999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
+|. ..+..++.++.+|..|+++++-.....+.|++..+..++-..+++..+.+|+..+..|..+.-.
T Consensus 1821 lLH----S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1821 LLH----SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HHh----cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 994 4668899999999999999998888888899999988887777799999999999999986533
No 123
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.87 E-value=0.015 Score=54.98 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=107.8
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh--hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK--DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVA 466 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 466 (617)
.+.+.+.+..|+..|..+.... ... .....+.+ ...+..+...+.+.+..+...|+.++..++..-...-.-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~-~~~----~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN-APE----DFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH--B---------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcC-Ccc----ccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 4577888999999999987655 111 11122221 1455677777777778899999999999997332221111
Q ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-
Q 007131 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK- 545 (617)
Q Consensus 467 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~- 545 (617)
-...++.|++.+.+...-+++.|..+|..+...-..-..+. ++.+...+ .+.++.++..++..+..+...-+
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~---~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGL---KSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHT---T-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHH---hCCCHHHHHHHHHHHHHHHHHccc
Confidence 12247888888888888899999999999886533111110 23333444 46788999999999998875333
Q ss_pred chHHHHH----hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 546 CSMEVAL----AGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 546 ~~~~i~~----~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
....+.. ...++.+..++.+++ +++++.|-.+++.+...
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDAD-PEVREAARECLWALYSH 207 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Confidence 1111111 235667777888875 89999999999999764
No 124
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00013 Score=67.09 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 204 CPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
..+|+.|.+.++...+-..+..+++|++|.++.+......++..++..||+|++|++++|.+.+-.-..-+..+++|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 45666777777755555777888999999999875555667788888899999999999987642222334458889999
Q ss_pred EccCCCCCC
Q 007131 284 CALNCPVLE 292 (617)
Q Consensus 284 ~l~~c~~~~ 292 (617)
++.+|....
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 999997554
No 125
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00059 Score=63.07 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
.+.+.|+..|| .++|- .|+..+|.|+.|.|+-|..-+-..+..|++|++|.+..| .|.+-.=.+-..++|+|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 46788899999 78773 356788999999999885445578899999999999886 45433323334789999999
Q ss_pred EeccCC----CCHHHHHHHHhcCCCCCEEE
Q 007131 259 DVSRTD----VGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 259 ~l~~~~----~~~~~l~~~~~~~~~L~~L~ 284 (617)
-|..|. .+..--...+..+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888853 23333345677799999886
No 126
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.78 E-value=0.03 Score=56.35 Aligned_cols=152 Identities=25% Similarity=0.262 Sum_probs=105.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+..+++.+.+.+..++..|...+.. +....+++.+..++.+.++.+|..|+.+|..+
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~------------------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----- 101 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGE------------------LGSEEAVPLLRELLSDEDPRVRDAAADALGEL----- 101 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh------------------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----
Confidence 3778888888888888888888654 33445778999999999999999999866543
Q ss_pred hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCH------------
Q 007131 461 VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD------------ 527 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~------------ 527 (617)
....+++.++.++.. .+..++..|+.+|..+-.. .++.+++..+.+ ...
T Consensus 102 -----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~---~~~~~a~~~~~~~~~ 163 (335)
T COG1413 102 -----GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQD---EDSGSAAAALDAALL 163 (335)
T ss_pred -----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhcc---chhhhhhhhccchHH
Confidence 223357888999984 8889999999999888543 347777777753 221
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.++..+...+..+ .....++.+..++.+.. ..++..|..+|..+..
T Consensus 164 ~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 164 DVRAAAAEALGEL----------GDPEAIPLLIELLEDED-ADVRRAAASALGQLGS 209 (335)
T ss_pred HHHHHHHHHHHHc----------CChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhc
Confidence 2333333333332 22334566777777664 6788888888887764
No 127
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.76 E-value=0.036 Score=57.69 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=114.3
Q ss_pred HHHHhhCCHHHHHHHH----------hcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcC-----CHHH
Q 007131 422 EAVMKDGGIRLLLDLA----------KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-----NRLV 485 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL----------~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~-----~~~~ 485 (617)
..+....++..|.++- ...++++...|+++|+|+.. ++..|..+++.|+.+.+++.|+.. +.++
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 4566666677777665 23478899999999999999 566889999999999999999986 7788
Q ss_pred HHHHHHHHHHhcC-CcchHHHHHh-cCChHHHHHHHhhc-------C-------CCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 486 AEEAAGGLWNLSV-GEEHKGAIAD-AGGVKALVDLIFKW-------S-------SGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 486 ~~~a~~~L~nL~~-~~~~~~~i~~-~g~i~~L~~ll~~~-------~-------~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
.-.....|.-++. ..+.+..+++ .+++..++..|... . ..+......++.++.|+....+....
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 8889999988875 4477777776 58888888777540 0 12455778899999999865444322
Q ss_pred HHHhCCHHHHHHHHhc--------CCchhHHHHHHHHHHHH
Q 007131 550 VALAGGVHALVMLARS--------CKFEGVQEQAARALANL 582 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~--------~~~~~~~~~a~~~L~~l 582 (617)
-...+.++.|+..+.. .+-+....++..+|.|+
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 1112334444443321 12257788888888887
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.76 E-value=0.0022 Score=44.88 Aligned_cols=55 Identities=33% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.++..|+++|++++........-.....++.|+.++.+++ +.|+.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 36889999999998876665544455678899999998875 79999999999875
No 129
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.75 E-value=0.00039 Score=67.45 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=47.5
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++.+++|+.|++++| .++... ...+.+..+++.|.+..|.+..-. ..++.++..|+.|++.++.+..-.
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIE-DGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhh-hhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEe
Confidence 45678888999999886 454322 233345667888888887654333 456677888888888888754433
No 130
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.62 E-value=0.00032 Score=50.48 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.0
Q ss_pred CCCceEeecC
Q 007131 205 PNLTDIGFLD 214 (617)
Q Consensus 205 ~~L~~L~l~~ 214 (617)
++|++|++++
T Consensus 25 ~~L~~L~l~~ 34 (61)
T PF13855_consen 25 PNLETLDLSN 34 (61)
T ss_dssp TTESEEEETS
T ss_pred CCCCEeEccC
Confidence 3444444443
No 131
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.55 E-value=0.085 Score=50.00 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=138.8
Q ss_pred HhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHH-HhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccchhhH
Q 007131 386 SLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAV-MKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNAKVA 462 (617)
Q Consensus 386 ~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i-~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~~~ 462 (617)
.+++.-++-.+.-|...+.+|+.. +.+|..+ ++...-..++++++.. +.++|-...-+++.++.+++..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~--------~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a 227 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD--------VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH
Confidence 333444444677788888887543 3333433 3555667888988875 5789999999999999999988
Q ss_pred HHHHHhCC-HHHHHHHHhcC-CHHHHHHHHHHHHHhcC-Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH---H
Q 007131 463 KAVAEEGG-INILAVLARSM-NRLVAEEAAGGLWNLSV-GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA---G 535 (617)
Q Consensus 463 ~~i~~~~~-i~~L~~lL~~~-~~~~~~~a~~~L~nL~~-~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~---~ 535 (617)
+.|-+... +.-++++.+.. .+.+.+-+++++.|+.. .+ ..-..+...|-+.+-+++|.+.-..+++++...- .
T Consensus 228 qdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s 307 (432)
T COG5231 228 QDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS 307 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 76665433 77788888763 45688889999999986 32 3344444456566666776552233333332111 1
Q ss_pred ----------HH-HHhcc--------C---------CCchHHHHHh--CCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 536 ----------AL-ANLAA--------D---------DKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 536 ----------~L-~~l~~--------~---------~~~~~~i~~~--~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.. ..++. . ..+...+.+. ..+..|.++++...+...-..||.-+..+...
T Consensus 308 ~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 308 RLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred HHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh
Confidence 11 11111 1 1223344433 34678888888764333444566666666653
Q ss_pred CCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 586 ~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+. ...++...|+=+.+.+++.+++++||
T Consensus 388 ~PE---~~~vl~Kyg~k~~im~L~nh~d~~Vk 416 (432)
T COG5231 388 SPE---INAVLSKYGVKEIIMNLINHDDDDVK 416 (432)
T ss_pred Cch---HHHHHHHhhhHHHHHHHhcCCCchhh
Confidence 333 34666788999999999999999885
No 132
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.45 E-value=0.0039 Score=35.74 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.8
Q ss_pred CcCCCeecccCCCCCCHHHHHHHHh
Q 007131 226 VLSVRFLSVAGTSNMKWGVVSQVWH 250 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l~~l~~ 250 (617)
|++|++|++++|.+++|.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4677777777777777777776653
No 133
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.42 E-value=0.00015 Score=52.17 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=27.7
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (617)
|+|++|++++| .++. ..+..+++|++|++++| .++.-. ...+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCC
Confidence 46667777666 3332 34556666666666654 222100 112234555555555554
No 134
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.073 Score=55.44 Aligned_cols=167 Identities=17% Similarity=0.061 Sum_probs=112.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh--------CCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD--------GGIRLLLDLAKSWREGLQSEAAKAI 452 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~~a~~~L 452 (617)
.|.|..+|.+++...++-|..+|..++..+.+ +.+. -.+|.++++.+++++.+|..|+.++
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~-----------~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQ-----------FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHH-----------HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 38999999998888889999999887543322 2222 2578999999999999999999999
Q ss_pred HHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 453 ~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
..........-...-...++.+..+-.+.+++|++..|.++.-|.....-+..=--.+.++-++..- .+.++.+..+
T Consensus 199 Nq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t---qd~dE~VALE 275 (885)
T KOG2023|consen 199 NQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT---QDVDENVALE 275 (885)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc---cCcchhHHHH
Confidence 8766543322222112235666677777899999999999998874321111111123444444444 4577789999
Q ss_pred HHHHHHHhccCCCchHHHHHh--CCHHHHHH
Q 007131 533 AAGALANLAADDKCSMEVALA--GGVHALVM 561 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~--~~~~~L~~ 561 (617)
|+.-...+|..+-.+..+... ..+|.|+.
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 999999999888666555431 34555554
No 135
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.32 E-value=0.0045 Score=35.45 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=9.8
Q ss_pred CCCCeeeccCccCCcHHHHHHH
Q 007131 179 PKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l 200 (617)
++|++|+|++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444433
No 136
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.12 Score=56.76 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHH
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINI 473 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~ 473 (617)
-..-++.+|.|+.....+-.++ .-....-.|..+.++.+|... ++.++..|..++..+..+.+.-.-++..|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasv---fgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASV---FGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhh---ccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 4467888999987665543221 001233356778888888765 789999999999999999999999999988888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC
Q 007131 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 474 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
|+.+|.+ -|..++.++.+|..|+..++......+.|++..+..++- .+.+++.+.+|+..++.|..+
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c--~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC--LTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh--ccCcHHHHHHHHHHHHHhhhc
Confidence 8888855 466899999999999999998888889999999988886 467888999999999999754
No 137
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.29 E-value=0.017 Score=52.05 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhcccCCCcccC----Cc----hhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhccchh
Q 007131 395 VQERAATGLATFVVINDENASI----DC----GRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~----~~----~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~ls~~~~ 460 (617)
....+++.|.||++.+.....+ .+ .......+..++..|++.+.. ...+-....+.++.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 3456677777776544332101 00 000112344577888888766 234457788999999999999
Q ss_pred hHHHHHHh--CC--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 007131 461 VAKAVAEE--GG--INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (617)
Q Consensus 461 ~~~~i~~~--~~--i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~ 509 (617)
+|..+... +. +..|+....+.+..-+..++++|.|+|++.+....+...
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 99999863 23 677777777787777889999999999998877777764
No 138
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.25 E-value=0.0018 Score=61.19 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=55.5
Q ss_pred CCCCCCCC----HHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEe
Q 007131 37 VVDWTSLP----DDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRF 110 (617)
Q Consensus 37 ~~~~~~LP----~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l 110 (617)
.+.+..|| +++.+.||+||+..++..|..|||+|+++..++-+|+.+-....+.+ +.+..+.++-.--+.+.+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~d-slWrgl~e~rqw~~~lf~ 148 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTD-SLWRGLSERRQWDQYLFK 148 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchH-HHHhhhhhccCcchhhcc
Confidence 46788899 99999999999999999999999999999999999987754443333 445555554332344444
No 139
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.036 Score=57.55 Aligned_cols=203 Identities=18% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch----
Q 007131 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA---- 459 (617)
Q Consensus 384 l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~---- 459 (617)
++.+.+..+..++..|+.+|..|.. .-+. ........++.+.+.+.++|..|+.+++-.+.-.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL-----------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL-----------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc-----------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 6677778888999999999888743 1111 1123456788888888999999977766555411
Q ss_pred --hh-HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c----------------------------------
Q 007131 460 --KV-AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---------------------------------- 501 (617)
Q Consensus 460 --~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---------------------------------- 501 (617)
++ ...+. -.++..+++.+.+.+-.++..|+.+|+.+..-+ +
T Consensus 270 e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 270 ERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred cchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 11 11111 224556666666665566666666655443221 1
Q ss_pred ----------------hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc
Q 007131 502 ----------------HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS 565 (617)
Q Consensus 502 ----------------~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~ 565 (617)
.-..|+..|+--.++.-+++ +--+|+++|...+..|+...+. .....+..|+.++.+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfND 421 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFND 421 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhcc
Confidence 11122333344444444432 3457899999999999976655 112356788888887
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 566 CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.. +.|+..|..+|..|+.... ++...++.+...+.+.+.+||
T Consensus 422 E~-~~VRL~ai~aL~~Is~~l~---------i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 422 EI-EVVRLKAIFALTMISVHLA---------IREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HH-HHHHHHHHHHHHHHHHHhe---------ecHHHHHHHHHHHHhcCHHHH
Confidence 64 8999999999999986422 234456666666666655554
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.19 E-value=0.19 Score=43.25 Aligned_cols=117 Identities=13% Similarity=0.151 Sum_probs=90.0
Q ss_pred hHHHHhcChHHHHHhhccCC------HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHH
Q 007131 373 DDFWLKQGAGLLLSLMQSTQ------EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGL 444 (617)
Q Consensus 373 ~~~~~~~~i~~l~~~l~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~ 444 (617)
.+|+...|+..+++++..+. .+....++.++..|.....-. =...+..++..++...... ++.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs--------Wd~l~~~FI~Kia~~Vn~~~~d~~i 76 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS--------WDTLSDSFIKKIASYVNSSAMDASI 76 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc--------hhhccHHHHHHHHHHHccccccchH
Confidence 35677889999999997654 466777888888875432211 1345667788888888754 6889
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
...|..+|-++..+.+.....+.... ++.|+..|+..+++++.+|...+-.|-
T Consensus 77 ~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 77 LQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999998887666666665 899999999999999999987776664
No 141
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.17 E-value=0.76 Score=46.31 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=126.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-------HHHHHHHHHHHHHh
Q 007131 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-------EGLQSEAAKAIANL 455 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-------~~~~~~a~~~L~~l 455 (617)
....+....+.+.|..|+.....+...+|-+ ...++.+.++-+.+.+-++|.+.+ .-.+..+..+|+-.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~----a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIV----ALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchh----hhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3456666677777888888888887776655 455678889988999999997642 23577788899988
Q ss_pred ccchhh--HHHHHHhCCHHHHHHHHhcC-CH------HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 456 SVNAKV--AKAVAEEGGINILAVLARSM-NR------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 456 s~~~~~--~~~i~~~~~i~~L~~lL~~~-~~------~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
+..++. .+.+ .+.||.|.+++... ++ .+.+.+-.+|..++..+.....++..|+++.+.++-.- ++.+
T Consensus 91 C~~pElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~ 167 (698)
T KOG2611|consen 91 CRVPELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGS 167 (698)
T ss_pred hCChhhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCc
Confidence 888874 3344 34589999999862 22 37889999999999999999999999999999977654 4444
Q ss_pred HHHHHHHHHHHHHhc----cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 527 DGVLERAAGALANLA----ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~----~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.+. .-++-++.-+. ..++....+.. .+..+..=+... +...+..+|..|..+-
T Consensus 168 ~d~-alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 168 HDM-ALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVL 224 (698)
T ss_pred hhH-HHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 332 22222222222 23333344433 133333333333 3567777777777543
No 142
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.11 Score=49.32 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=134.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.|-.-|..++..++.-+|..+..+..++|.|.. .....++..|.++.++..+...+.++-..|...+..++..++.
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaV---seillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAV---SEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhH---HHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 5666667778888999999988888777775521 1113456889999999999999999999999999999999998
Q ss_pred HHHHHHhCCHH--HHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 462 AKAVAEEGGIN--ILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 462 ~~~i~~~~~i~--~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
-+.+....-.+ .+.++-...++-++......+..+.. +++.....-..|.+..|..=|. -..+.-++.+++....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk--GteDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK--GTEDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc--CCcceeehhhHHHHHH
Confidence 88888766543 44455445566667777777777754 4455555556777777666664 2345567888999999
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHh
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~ 564 (617)
.|+....+++.+.+.|.+..+...+.
T Consensus 240 eLaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhh
Confidence 99999999999999999998888775
No 143
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.3 Score=50.87 Aligned_cols=177 Identities=13% Similarity=0.062 Sum_probs=115.4
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC----CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG----GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKA 464 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~ 464 (617)
.+....+|..|..+...+.. ..... .++.++.-+.+.....+..++..+..++...+..-.
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~---------------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR---------------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred hccchhhhHHHHHHHHHHHH---------------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 34456777777766665521 12222 334444444444677889999999999997776667
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-----------------------
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----------------------- 521 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----------------------- 521 (617)
..-...||.+.+.|-+..+++++.+..+|..++.--+|-... -.+|.|++.+.+
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 777788999999999999999999999999887654443311 133444443332
Q ss_pred -------------cCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 522 -------------WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 522 -------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
....+..+.+.++.+++|+|..-+....+.. ...+|.+-+.+... .+++|+.|+.+|..+-.
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLE 444 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHH
Confidence 0113456778899999999965544333332 12334444444455 48999999999977765
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.09 E-value=0.026 Score=44.60 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHH
Q 007131 486 AEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVAL 552 (617)
Q Consensus 486 ~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~ 552 (617)
+...+.+|+||+.. +.++..+.+.||+|.++..... .+.++-+++-|..|+.||+.+. +++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45667899999964 5899999999999999988765 5678999999999999999754 55655554
No 145
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.07 E-value=0.0067 Score=39.95 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|.+++ ++..+.++++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 467788888877763 3444567888888888888644
No 146
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.18 Score=48.09 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=128.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchh--h-H--HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHH
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAK--V-A--KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~-~--~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 505 (617)
+.|-+=|..++..++..+|..+..+..+-+ . . ..++..+..+.++..+-..+.++..+|...+..++..++.-..
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaalea 164 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEA 164 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHH
Confidence 444444455678889999988888777433 1 1 2334566689999999999999999999999999999988888
Q ss_pred HHhcCChHHH--HHHHhhcCCCCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 506 IADAGGVKAL--VDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 506 i~~~g~i~~L--~~ll~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.+.+....+ ..+-.+ .+.-++..+...+-.+.+ .++........|.+..|..-++...+.-+..++......|
T Consensus 165 iFeSellDdlhlrnlaak---cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 165 IFESELLDDLHLRNLAAK---CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred hcccccCChHHHhHHHhh---hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8887777664 333322 444667777887777764 4455666677777777777776544567888899999999
Q ss_pred hccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+....++ +.+.+.|.++.+..++...+.
T Consensus 242 aeteHgr----eflaQeglIdlicnIIsGads 269 (524)
T KOG4413|consen 242 AETEHGR----EFLAQEGLIDLICNIISGADS 269 (524)
T ss_pred HHHhhhh----hhcchhhHHHHHHHHhhCCCC
Confidence 9876663 455567889988888776443
No 147
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.01 E-value=0.046 Score=49.26 Aligned_cols=119 Identities=16% Similarity=0.016 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHh----------------CCHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEE----------------GGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~----------------~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~ 497 (617)
.+......++.+|+|++..++.+..+.+. ..+..|+.+... ...+-..+.+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34456678899999999988887755532 136677777655 22345678899999999
Q ss_pred CCcchHHHHHhcC--C--hHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhC---CHHHHHH
Q 007131 498 VGEEHKGAIADAG--G--VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG---GVHALVM 561 (617)
Q Consensus 498 ~~~~~~~~i~~~g--~--i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~---~~~~L~~ 561 (617)
..++.|.-+.+.. . +..|+.... +.+.-=+.-+++++.|+|.+.+....+.... .++.|+-
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~---~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTE---HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhc---cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 9999999999732 3 445555553 3354556778999999999888887777643 3444444
No 148
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.01 E-value=0.0039 Score=64.90 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCeecccCCCCCCHHHHHHHHhcC----CCCCeEEeccCCCCH---HHHHHHHhcCCCCCEEEccCCC
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKL----PKLVGLDVSRTDVGP---ITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+..|++..| .+.|.++..+...+ +.+++++++.|.+++ ..+.+.+..++.++.+.+++++
T Consensus 235 ~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 235 LRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 344444443 34444444444322 223555555544332 2233334444555555555444
No 149
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.93 E-value=0.00091 Score=69.99 Aligned_cols=107 Identities=22% Similarity=0.189 Sum_probs=69.1
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH-hcCCCCceEeecCCCCCCHHHHhcC
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA-KLCPNLTDIGFLDCLNVDEVALGNV 226 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~l~~~ 226 (617)
+-+|.|+.|+|+ .+++++ ++.+ ..|+.|++|+|+++ .++. +..+. ..| +|..|.+.+|..-+-.++.++
T Consensus 184 qll~ale~LnLs---hNk~~~--v~~L-r~l~~LkhLDlsyN-~L~~--vp~l~~~gc-~L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLS---HNKFTK--VDNL-RRLPKLKHLDLSYN-CLRH--VPQLSMVGC-KLQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccc---hhhhhh--hHHH-Hhcccccccccccc-hhcc--ccccchhhh-hheeeeecccHHHhhhhHHhh
Confidence 445688999995 345654 3333 45899999999986 3322 11121 123 388999999844444788899
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 265 (617)
++|+.|++++|--.....+..+ ..+..|+.|.+.||.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pL-wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPL-WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHH-HHHHHHHHHhhcCCcc
Confidence 9999999998733333333333 3456678888888643
No 150
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.92 E-value=0.00027 Score=60.33 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC-CCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL-NVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+.+|+.|+++.+ ++.+ +..-.+.+|+|+.|+++-+. .+...++.+++-|+.|+++++ ++++..+..-+-....|+
T Consensus 55 l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHH
Confidence 345555555544 3322 22222344566666665442 122345566666666666654 444433322222233455
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
-|.++.+++ +.++.=+..+++|+.|.+.+++.++
T Consensus 131 alyl~dndf--e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 131 ALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred HHHhcCCCc--ccCChhhhhhcceeEEeeccCchhh
Confidence 555555543 2233334456666666666665443
No 151
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.88 E-value=0.0047 Score=58.15 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHc-----cCChHhHHHHhhhchhHHHhhcCCCccc
Q 007131 38 VDWTSLPDDTVIQLMS-----CLNYRDRASLSSTCRTWRALGASPCLWS 81 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~-----~L~~~~~~~~~~vck~w~~~~~~~~~w~ 81 (617)
.+|..||||+|..||. .++++++.+++.|||.|+..++++.+|+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR 153 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR 153 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence 3478999999999996 4578999999999999999999999985
No 152
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.83 E-value=0.0032 Score=65.56 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=116.1
Q ss_pred ccEEeccCCCCCCHHHHHHHH---hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC----CCCeeeccCccCCcHHHHHH
Q 007131 127 LRELSGDYCRKITDATLSVIV---ARHEALESLQLGPDFCERITSDAVKAIALCCP----KLKKLRLSGIRDICGDAINA 199 (617)
Q Consensus 127 L~~L~l~~~~~~~~~~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~----~L~~L~l~~~~~i~~~~l~~ 199 (617)
+..|.|.+|. +.+.+...+. ...++|+.|++++ + .+++.+...+....+ .|++|.+..| .++.++...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~--n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG--N-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhccc--C-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHH
Confidence 7788888887 6666655554 4667899999963 4 677888888776543 4677888888 677766554
Q ss_pred HH---hcCCCCceEeecCCCCCCHH------HHh----cCcCCCeecccCCCCCCHHHHHHHH---hcCCC-CCeEEecc
Q 007131 200 LA---KLCPNLTDIGFLDCLNVDEV------ALG----NVLSVRFLSVAGTSNMKWGVVSQVW---HKLPK-LVGLDVSR 262 (617)
Q Consensus 200 l~---~~~~~L~~L~l~~~~~~~~~------~l~----~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~-L~~L~l~~ 262 (617)
+. ..++.++.++++.|...... ++. ...++++|++++| .++......+. ...+. +..|++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 44 23678888899888544321 123 3578999999998 66666655544 33444 66699999
Q ss_pred CCCCHHHHHHHHhcCC----CCCEEEccCCCCCChhHH
Q 007131 263 TDVGPITISRLLTSSK----SLKVLCALNCPVLEEENN 296 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~----~L~~L~l~~c~~~~~~~~ 296 (617)
|.+++..+..+...++ .+++++++.|.+......
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 9888887776666544 559999999997776653
No 153
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.12 Score=52.99 Aligned_cols=194 Identities=16% Similarity=0.100 Sum_probs=124.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcc-cCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVV-INDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
.-|..+|...+++++.-+-.++.++-. ..... ..+.-...++.++.-+.++++.+|..|..-+.....-..
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P--------~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP--------SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc--------cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 566777777778887655544443321 11111 112344567888888999999999999776665555333
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCH-HHHHHHHHH---HHHhcCCcchHHHHHhc-CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNR-LVAEEAAGG---LWNLSVGEEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~---L~nL~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
......-.|.+..++.++.+.++ .+.+.|..+ |..+...+..... ++. ..+..+.+.+ .++..+.+..|+.
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l---~~~~~~tri~~L~ 358 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYL---SDDREETRIAVLN 358 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHh---hcchHHHHHHHHH
Confidence 22223334445666667766544 344444332 3334443333333 332 3455566666 4577788999999
Q ss_pred HHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.+..|-..-+++........++.|..-+.+.. +++...+..+++++|.+...
T Consensus 359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHhhCcchhhhhccHHHHHHHHhhcCch-hHHHHHHHHHHHHHhcCccc
Confidence 99999877777777777778888888887764 89999999999999975443
No 154
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.79 E-value=6.7e-05 Score=63.95 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 124 ARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
.++|+.|++++.. +.+ +..-...+|.|+.|+++
T Consensus 55 l~nlevln~~nnq-ie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred hhhhhhhhcccch-hhh--cChhhhhchhhhheecc
Confidence 4455555555433 222 22223345555555554
No 155
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.77 E-value=0.24 Score=49.81 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=101.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.+..++...++.++..|+.+|..+ ....+++.+++++. +.+..++..|+.+|..+-.
T Consensus 77 ~~l~~~l~d~~~~vr~~a~~aLg~~------------------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--- 135 (335)
T COG1413 77 PLLRELLSDEDPRVRDAAADALGEL------------------GDPEAVPPLVELLENDENEGVRAAAARALGKLGD--- 135 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHcc------------------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---
Confidence 8888999999999999999977754 22346789999999 5789999999999986533
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCH------------HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNR------------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~------------~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 528 (617)
..++..++..+..... .++..++.+|..+- ....++.+...+. +....
T Consensus 136 -------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~---~~~~~ 195 (335)
T COG1413 136 -------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------DPEAIPLLIELLE---DEDAD 195 (335)
T ss_pred -------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHh---CchHH
Confidence 2336677777766542 23444444443332 2357777888885 35668
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
++..|..+|..+.... ..+.+.+...+.+.. ..++..++.+|..+
T Consensus 196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~-~~vr~~~~~~l~~~ 240 (335)
T COG1413 196 VRRAAASALGQLGSEN--------VEAADLLVKALSDES-LEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC-HHHHHHHHHHhccc
Confidence 8888998888887544 223344555555443 56666666665554
No 156
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.75 E-value=0.01 Score=61.39 Aligned_cols=175 Identities=20% Similarity=0.215 Sum_probs=106.4
Q ss_pred CCceEEEecCCCCccHHHHh-cC-CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSIIHL-QA-RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+.++.|.+.+....+-.... .. ++|+.|++++.. +.+ +..-...+++|+.|+++ ++ .+++. .......++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~--~N-~l~~l--~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLS--FN-DLSDL--PKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhh--hhhhhhccccccccccC--Cc-hhhhh--hhhhhhhhh
Confidence 56777777766544322222 33 278888887765 333 21234568888888885 23 44432 222224678
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|+.|+++++ .+++ +.........|++|.++++..+.. ..+..++++..|.+..+... + +......+++|+.|+
T Consensus 188 L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~--~~~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-D--LPESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-e--ccchhccccccceec
Confidence 888888887 4433 222222334588888888743333 45677777877776665322 1 123445677899999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++.++...- +....+++.|+++++......
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCccccccc
Confidence 99987654432 456788999999988766554
No 157
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.23 Score=53.11 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=118.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.|...+++++.++-++++|+.++..+-....+.. ..+++...++|.+.+..+...++..+..++. ++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~------------e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV------------EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH------------HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 3888889999999999999999888765544432 1234455555555555555555554444444 22
Q ss_pred hhHHHHHH----------------------hCCH---------HHHHHHHhcCCHHHHHHHHHHHHHhcCCc---chHHH
Q 007131 460 KVAKAVAE----------------------EGGI---------NILAVLARSMNRLVAEEAAGGLWNLSVGE---EHKGA 505 (617)
Q Consensus 460 ~~~~~i~~----------------------~~~i---------~~L~~lL~~~~~~~~~~a~~~L~nL~~~~---~~~~~ 505 (617)
+.-..+.+ .+|| =.++++|...+++..+.-..+|..++.+. .|...
T Consensus 212 ~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 212 DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchh
Confidence 21111111 1111 12334455566666667777777776543 23333
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc--hH-------HHH--HhCCH----HHHHHHHhcCCchh
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC--SM-------EVA--LAGGV----HALVMLARSCKFEG 570 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~-------~i~--~~~~~----~~L~~ll~~~~~~~ 570 (617)
.+-...|..+..+. .+.+++..|+.+|+-+-.++++ |. .++ +..++ ..+++++++++ ..
T Consensus 292 AILYE~V~TI~~I~-----~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD-~S 365 (866)
T KOG1062|consen 292 AILYECVRTIMDIR-----SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD-VS 365 (866)
T ss_pred HHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc-HH
Confidence 33234555555444 5668888888888888765544 11 111 11222 34788888886 89
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++..|...+..|.. ..+... .++.|+..|.+..+
T Consensus 366 IkrralELs~~lvn-----~~Nv~~-----mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 366 IKRRALELSYALVN-----ESNVRV-----MVKELLEFLESSDE 399 (866)
T ss_pred HHHHHHHHHHHHhc-----cccHHH-----HHHHHHHHHHhccH
Confidence 99999999999874 223233 35556665555433
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.60 E-value=0.04 Score=44.80 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=55.8
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 429 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
.+..|+++|.+ .++.....||.=|+.++. .+.++..+.+.|+-..++++|..++++|+..|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45688888843 478888999999999988 677888888888889999999999999999999988765
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.54 E-value=1.3 Score=43.74 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=113.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH--hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM--KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
...++.+.......|..++..+.++-...... +.+. ....+..+.+.++.+..+.+..|+.++.-++..
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--------d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLP--------DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 44555555566788999999888865333221 2222 334567888888888777788888888877764
Q ss_pred --hhhHHHHHHhCCHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCc-chHHHHHh-cCChHHHHHH--Hhh-c------C
Q 007131 459 --AKVAKAVAEEGGINILAVLARSMN--RLVAEEAAGGLWNLSVGE-EHKGAIAD-AGGVKALVDL--IFK-W------S 523 (617)
Q Consensus 459 --~~~~~~i~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~nL~~~~-~~~~~i~~-~g~i~~L~~l--l~~-~------~ 523 (617)
.+....+.+ ...|.|.+.+.... +.++..++.+|+-+++-. ..-..+.+ ...+..+... ... + .
T Consensus 118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 122334433 35678888888754 345556666666555421 11111110 1122222111 111 0 1
Q ss_pred CCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 524 SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+++.+..+|+.+-+-|... +..+..-.-...++.|+.+|.+++ .+|+.+|..+|+-|-.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALLYE 257 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 12356888888777777643 332222122356899999999885 8999999988887654
No 160
>PLN03150 hypothetical protein; Provisional
Probab=95.48 E-value=0.023 Score=62.06 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred CceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 207 LTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 207 L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
++.|+++++. ++ ...+..+++|+.|++++| .++. .+......+++|+.|++++|.++... +..+.++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-ccccCCHHHhCCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence 5566666652 22 234566667777777665 2221 11222345667777777776654332 4445566777777
Q ss_pred EccCCCCC
Q 007131 284 CALNCPVL 291 (617)
Q Consensus 284 ~l~~c~~~ 291 (617)
++++|...
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 77766544
No 161
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.48 E-value=0.046 Score=55.08 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=93.1
Q ss_pred HHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+.|+++++|++++|... .++ ..-.+|++|.+++|..++. +.... .++|+.|+++ +|..+. .-.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls--~Cs~L~--------sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVC--HCPEIS--------GLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEcc--Cccccc--------ccc
Confidence 344699999999999432 222 2234799999999986532 11111 2589999995 475553 113
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHh-cC-cCCCeecccCCCCCCHHHHHHHHh-cCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALG-NV-LSVRFLSVAGTSNMKWGVVSQVWH-KLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~-~~-~~L~~L~l~~~~~i~~~~l~~l~~-~~~~L 255 (617)
++|+.|++.+. .... +...-++|++|.+.++.......+. .+ ++|++|++++|..+. +.. -..+|
T Consensus 112 ~sLe~L~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP~SL 179 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII------LPEKLPESL 179 (426)
T ss_pred cccceEEeCCC-CCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc------CcccccccC
Confidence 57888988754 3221 2223357888888654222222221 23 689999999886542 111 12478
Q ss_pred CeEEeccCC-----CCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 256 VGLDVSRTD-----VGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 256 ~~L~l~~~~-----~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++|+++.+. +....++ +++ .|++.+|-.+.
T Consensus 180 k~L~ls~n~~~sLeI~~~sLP------~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 180 QSITLHIEQKTTWNISFEGFP------DGL-DIDLQNSVLLS 214 (426)
T ss_pred cEEEecccccccccCcccccc------ccc-EechhhhcccC
Confidence 999887642 1222221 345 77777774443
No 162
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.47 E-value=0.031 Score=52.71 Aligned_cols=169 Identities=18% Similarity=0.078 Sum_probs=96.2
Q ss_pred hcCCHHHHHHHHHHHHHhccch---hhHHHHHH--hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCh
Q 007131 438 KSWREGLQSEAAKAIANLSVNA---KVAKAVAE--EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (617)
Q Consensus 438 ~~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~--~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i 512 (617)
.+.+.+.|..|+.-|..+.... +....+.. ...+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3457889999999998888744 33333322 133456667777777788999999999998543222111123467
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (617)
|.|++.+. +....++..|..+|..++..-.....+. ++.+.....+. ++.++..++..+..+...... .
T Consensus 97 ~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~---~ 165 (228)
T PF12348_consen 97 PPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK-NPQVREECAEWLAIILEKWGS---D 165 (228)
T ss_dssp HHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccc---h
Confidence 77888774 4667888999999999986544111111 23444455555 489999999999988753331 1
Q ss_pred cccccc----cCcHHHHHHHhcCCCCCCC
Q 007131 593 SAVGQE----AGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 593 ~~~~~~----~g~~~~L~~ll~~~~~~vr 617 (617)
...+.. ...++.+...+.+++++||
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 112112 2367888888888888776
No 163
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.45 E-value=0.018 Score=64.76 Aligned_cols=106 Identities=15% Similarity=0.051 Sum_probs=56.2
Q ss_pred hCCCceEEEecCCCC--ccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 101 RCMNLQKLRFRGAES--ADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~--~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
.|++|++|-+.++.. ... ......|.|+.|||++|..++. +......+-+|++|++. ...+.. ++.-..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~---~t~I~~--LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLS---DTGISH--LPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhccccc---CCCccc--cchHHH
Confidence 455677777776642 111 1123678888888887654332 44444556677877774 234431 111122
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 215 (617)
.+.+|.+|++.+..... .+..+...+++|++|.+..-
T Consensus 616 ~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHhhheeccccccccc--cccchhhhcccccEEEeecc
Confidence 24566677766543221 11333334567777766543
No 164
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.47 Score=51.57 Aligned_cols=67 Identities=21% Similarity=0.069 Sum_probs=29.4
Q ss_pred ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 511 ~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.++++.+++ .+.++.|++.|+-|+..+=.- .+..+.+.|.+..+..++.+.+ +.+..+|..+|..+.
T Consensus 128 ~~~~ik~~l---~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLL---TDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSD-PIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHc---cCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhc
Confidence 334444444 234445555555555544321 1222333344444444444432 455555555555543
No 165
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.42 E-value=0.35 Score=45.48 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhc-CCcchHHHHHhcCChHHHHHHH
Q 007131 443 GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLI 519 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~L~~ll 519 (617)
.....|..+|.-+.. +++.+..+.+..+++.++++|.. ..+.++.+++.+|..+- .++.|...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345667788888887 89999999999999999999954 66788888998888775 5668999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcc
Q 007131 520 FKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+. .+.+.+++-+++.-|+-...
T Consensus 186 k~-~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KS-KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cc-ccccHHHhHHHHHHHHHHHc
Confidence 87 55677888888877766554
No 166
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.40 E-value=1.9 Score=39.76 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccchh--hHHHHHHh
Q 007131 396 QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-----REGLQSEAAKAIANLSVNAK--VAKAVAEE 468 (617)
Q Consensus 396 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~ls~~~~--~~~~i~~~ 468 (617)
.-+|+..|..+|+..+. |..+.++..---+..+|... .+-+|-.+.++++.|..+++ .-..+...
T Consensus 96 VcnaL~LlQcvASHpdT--------r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T 167 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDT--------RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT 167 (293)
T ss_pred HHHHHHHHHHHhcCcch--------HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 35677777777766544 35777777666666676543 35689999999999998443 45566778
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----HHHHHhcC----ChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH----KGAIADAG----GVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 469 ~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~----~~~i~~~g----~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+.||..++.+..+++..+.-|+-++..+-.++.+ ++..-+-- .+..++.-+. ..++..+...+++|..+|
T Consensus 168 eIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~--~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV--SMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh
Confidence 8999999999999998899999999888776632 22222222 2333333333 457889999999999999
Q ss_pred ccCCCchHHHHHh--CCH--HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALA--GGV--HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~--~~~--~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.++..|..+... ..+ ..+..+++++ ...+..-...+.|++.
T Consensus 246 sdnprar~aL~~clPd~Lrd~tfs~~l~~D--~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 246 SDNPRARAALRSCLPDQLRDGTFSLLLKDD--PETKQWLQQLLKNLCT 291 (293)
T ss_pred cCCHHHHHHHHhhCcchhccchHHHHHhcC--hhHHHHHHHHHHHhcc
Confidence 9988877777642 111 2244455553 4677777777777764
No 167
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.39 E-value=0.64 Score=41.77 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC-
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG- 470 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~- 470 (617)
++.+|.+++.++.-|+..-+. + -...++.+...|.++++.+|..|+.+|.+|...+..+. .|-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----------~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l 64 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----------L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQL 64 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----------H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhh
Confidence 467899999999988644322 1 23457899999999999999999999999987543221 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
+..++.++.+++++++..|..++..+..... ...+ ...++.++..+.
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLN 111 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHh
Confidence 3778888999999999999999999986521 1111 234555555554
No 168
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.31 E-value=0.3 Score=50.91 Aligned_cols=159 Identities=19% Similarity=0.121 Sum_probs=113.3
Q ss_pred HHHHHHHhccchhhHHHHHHhCCHHHHHHHH----------hcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHH
Q 007131 448 AAKAIANLSVNAKVAKAVAEEGGINILAVLA----------RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALV 516 (617)
Q Consensus 448 a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL----------~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~ 516 (617)
|+.+|+.++.++.+.+.+....++..|++.- ...++.+...|..+|+|+-... ..|..+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3567888888888888888888888888776 2256789999999999999755 7888889999999999
Q ss_pred HHHhhcCC--CCHHHHHHHHHHHHHhcc-CCCchHHHHHh-CCHHHHHHHHhc--------C--------CchhHHHHHH
Q 007131 517 DLIFKWSS--GGDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS--------C--------KFEGVQEQAA 576 (617)
Q Consensus 517 ~ll~~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-~~~~~L~~ll~~--------~--------~~~~~~~~a~ 576 (617)
..|....+ .+.++.--..+.|--++. ..+.+..+++. +++..++..+.. . .+......+.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 99986211 256777778888888874 45556666554 777777775531 0 1235566788
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhc
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
.++.|++.+...... -.+.+.++.|+.++.
T Consensus 161 KllFNit~~~~~~~~----~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP----EEFSPSIPHLVSILR 190 (446)
T ss_pred HHHHHhhhccCcccc----hhhhHHHHHHHHHHH
Confidence 889999876554321 124556666666543
No 169
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.82 Score=48.48 Aligned_cols=178 Identities=15% Similarity=0.074 Sum_probs=121.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccc
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~ 458 (617)
.+|.|++-|..+++.++-.|+.+++.||+.++.+. - ...|.+.+++.+. |-.+........++|+--
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-------L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-------L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL 249 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-------c-----cccHHHHHHHhccCCCeehHHHHHHHhhcccc
Confidence 34899999999999999999999999998877662 1 2448888888765 677888888888888874
Q ss_pred hh-hHHHHHHhCCHHHHHHHHhcCCH-HHHHHHHHHHH--HhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 459 AK-VAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLW--NLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 459 ~~-~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~--nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
++ .... -+++|++++.+... .+...+..++. |++.+. ++-+.+. -++..|-.++. ++++.+++-+
T Consensus 250 EPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fie---dsDqNLKYlg 319 (877)
T KOG1059|consen 250 EPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIE---DSDQNLKYLG 319 (877)
T ss_pred Cchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhh---cCCccHHHHH
Confidence 44 2222 37889999988554 45555544443 444332 2222222 15666666664 4777899999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+-+++-+....+. .++ .--..++++|.+.+ +.++..|.-.|.-+..
T Consensus 320 Llam~KI~ktHp~---~Vq-a~kdlIlrcL~DkD-~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 320 LLAMSKILKTHPK---AVQ-AHKDLILRCLDDKD-ESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHhhhCHH---HHH-HhHHHHHHHhccCC-chhHHHHHHHHHHHhh
Confidence 9888888743322 222 12256778888775 8899999998888864
No 170
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.13 E-value=0.019 Score=64.56 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=104.4
Q ss_pred ceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCee
Q 007131 105 LQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184 (617)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 184 (617)
++++.+-++......-...++.|+.|-+.....--...-...+..+|.|+.|||+ +|...+ .++.....+-+|++|
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs--~~~~l~--~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS--GNSSLS--KLPSSIGELVHLRYL 600 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC--CCCccC--cCChHHhhhhhhhcc
Confidence 4555554443333223346778999888775420112223345668999999996 454443 243434447789999
Q ss_pred eccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HH-HhcCcCCCeecccCCC-CCCHHHHHHHHhcCCCCCeEEec
Q 007131 185 RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VA-LGNVLSVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 185 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~-l~~~~~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++++. .++ .+..=...+..|.+|++..+..... .+ ...+++|++|.+.... ..+...+..+ .++.+|+.+.+.
T Consensus 601 ~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 601 DLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSIT 676 (889)
T ss_pred cccCC-Ccc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheee
Confidence 99987 565 2222223456899999987654333 23 3558999999987643 2222223333 455566655554
Q ss_pred cCCC------------------------CHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 262 RTDV------------------------GPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 262 ~~~~------------------------~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.... ....+...+..+++|+.|.+.+|......
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 4221 00111112334678888999988865443
No 171
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.48 Score=49.40 Aligned_cols=207 Identities=18% Similarity=0.088 Sum_probs=128.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+++....-..+..|...+..+...... ..+.+.+.+..+.+.+.+.+...++.++ .++..+....
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i---------~~~~~~~~l~~l~~ai~dk~~~~~re~~-~~a~~~~~~~- 205 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGI---------ESLKEFGFLDNLSKAIIDKKSALNREAA-LLAFEAAQGN- 205 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHH---------hhhhhhhHHHHHHHHhcccchhhcHHHH-HHHHHHHHHh-
Confidence 6677777776667788888888887543322 3567788888898888876544444321 1111111000
Q ss_pred HHHHHHhCCHHHHHHHH---hcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA---RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL---~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
-....+...++.+-.++ .+....++++|..+...+-..- ..... -.+|.++.-+.. ..-+-+..++..+
T Consensus 206 Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~---~kWrtK~aslell 278 (569)
T KOG1242|consen 206 LGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLE---AKWRTKMASLELL 278 (569)
T ss_pred cCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHH---HhhhhHHHHHHHH
Confidence 00112223344444444 4456678887777765553221 11111 134444444432 2345677888899
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
..|+...+..-...-...+|.+.+.|-+.. ++++.++-.+|..++...++. .+. -.++.|++.+.++..
T Consensus 279 g~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN~----dI~---~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 279 GAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDNP----DIQ---KIIPTLLDALADPSC 347 (569)
T ss_pred HHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhccH----HHH---HHHHHHHHHhcCccc
Confidence 999887777777777788999999998875 899999999999999865542 221 258888888887763
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.96 E-value=0.035 Score=36.52 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=4.9
Q ss_pred hcCcCCCeecccC
Q 007131 224 GNVLSVRFLSVAG 236 (617)
Q Consensus 224 ~~~~~L~~L~l~~ 236 (617)
..|++|+.|++++
T Consensus 21 ~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 21 SNLPNLETLNLSN 33 (44)
T ss_dssp TTCTTSSEEEETS
T ss_pred hCCCCCCEEEecC
Confidence 3333333333333
No 173
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.92 E-value=0.018 Score=56.31 Aligned_cols=71 Identities=20% Similarity=0.101 Sum_probs=33.0
Q ss_pred hCCCceEEEecCCCCccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHH
Q 007131 101 RCMNLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVK 172 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~ 172 (617)
..++|+.|+|+.+....- -.....++|..|.+.+...|++-.- ..+.++..|+.|.++.-.|..+..+.+.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 345566666666543321 1112345555555555444555321 1223355666666653234344444443
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=0.4 Score=52.91 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=121.4
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH-HhccchhhHHHHHHhCCHHHHHHHHhc---CCHHHHHHHHHHHHHhcC
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIA-NLSVNAKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~nL~~ 498 (617)
.-..-|..|-++++|+++-.+++..-+-+=+ .||.++..+..+++.+|-.-++..|.. -+++-+.-|+-+|+.+..
T Consensus 507 LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 507 LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 3346789999999999998887765554444 455687788888888887777777765 245778889999999987
Q ss_pred Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 499 GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 499 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
+. -.+....+.+.+..-+..|.+ +..+-++.=++-||..|=. .+++|..-++.++...|..++.++- ++|+.+|+
T Consensus 587 nf~lGQ~acl~~~li~iCle~lnd--~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v-pEVRaAAV 663 (1387)
T KOG1517|consen 587 NFKLGQKACLNGNLIGICLEHLND--DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV-PEVRAAAV 663 (1387)
T ss_pred ccchhHHHhccccHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc-HHHHHHHH
Confidence 65 567777788888877888853 1245566667777777754 4566777788888999999998764 89999999
Q ss_pred HHHHHHhcc
Q 007131 577 RALANLAAH 585 (617)
Q Consensus 577 ~~L~~l~~~ 585 (617)
.||..+-..
T Consensus 664 FALgtfl~~ 672 (1387)
T KOG1517|consen 664 FALGTFLSN 672 (1387)
T ss_pred HHHHHHhcc
Confidence 999998763
No 175
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.78 E-value=0.018 Score=53.29 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=8.5
Q ss_pred HHHHHhcCCCCceEeecCC
Q 007131 197 INALAKLCPNLTDIGFLDC 215 (617)
Q Consensus 197 l~~l~~~~~~L~~L~l~~~ 215 (617)
+..++..||+|++|++++|
T Consensus 83 l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 83 LEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred ceehhhhCCceeEEeecCC
Confidence 3334444444444444444
No 176
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.77 E-value=0.21 Score=50.11 Aligned_cols=191 Identities=17% Similarity=0.084 Sum_probs=100.8
Q ss_pred hccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHH-H
Q 007131 388 MQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAV-A 466 (617)
Q Consensus 388 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~ 466 (617)
..+..+..+-.+|.++.++....-.+...+......+.-.|.- .+++.-++..|.+++.-+..++-.+... .
T Consensus 358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~f 430 (728)
T KOG4535|consen 358 YDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVLHPCLRQDVIF 430 (728)
T ss_pred hhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEeccchhhhHHH
Confidence 3444455677888888887655544433221221122222211 1223334555555555444465544332 2
Q ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----cc---hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-----EE---HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 467 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-----~~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
-.++...++..|.+..-.+++.|++++.|++.. +. ....+. .-.+..++..-..+.....++..++..+|.
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 233455566666665667899999999999731 11 112221 123333333332223456789999999999
Q ss_pred HhccCCC----chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 539 NLAADDK----CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 539 ~l~~~~~----~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
|+...-+ ........+.+..+....-.+...+|+.+||.++.||-.+.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9975211 11111122333333332222224799999999999998743
No 177
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.74 E-value=0.72 Score=47.30 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=113.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCcchHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNR----LVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~~~~~~~ 504 (617)
....+.+.+.+++...+..|..-|..++.+......+....|+..|..+..+... ++....+.++..+-...-..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3467888999999988888999999999999999999999999999999988544 556666666655543322222
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+...+|...+.+... .-....+...|+..|-++..+++. +..+.+.--+..|+..+..++ ..++..|.+.+-.+-
T Consensus 164 ~~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHH
Confidence 22333445555554422 234456788899999999988775 556666666899999998886 788888887777776
Q ss_pred ccCC
Q 007131 584 AHGD 587 (617)
Q Consensus 584 ~~~~ 587 (617)
...+
T Consensus 242 ~~a~ 245 (713)
T KOG2999|consen 242 RKAP 245 (713)
T ss_pred hhCC
Confidence 5333
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.66 Score=51.30 Aligned_cols=197 Identities=17% Similarity=0.128 Sum_probs=134.2
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-C--CHHHHHHHHHHH
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-W--REGLQSEAAKAI 452 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~--~~~~~~~a~~~L 452 (617)
..-|| |..+++|++.-.+++..-+.+=..+-..+ .+. +..++..++-.-++..|.. . +++-+..|+-+|
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SC------Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSC------QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL 581 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chh------HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHH
Confidence 35577 99999999988787665555444433332 222 2356677777777777766 2 468899999999
Q ss_pred HHhccc-hhhHHHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 453 ANLSVN-AKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 453 ~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
+-+..+ +-+++...+.+-+..-+..|.++ .+-++..++-+|..|=.+. +.|-.=.+.++.+.|+.+|. ++.++|
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls---D~vpEV 658 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS---DPVPEV 658 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc---CccHHH
Confidence 988874 44556665666577777777774 5667888888999996544 66776677899999999994 588999
Q ss_pred HHHHHHHHHHhccCC-----CchHH-----------HHHhCCHH----HHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 530 LERAAGALANLAADD-----KCSME-----------VALAGGVH----ALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~-----~~~~~-----------i~~~~~~~----~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.+|+.+|..+-.+. +.... +.-+..+. .++.++..+. +-++...+-+|.+...
T Consensus 659 RaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 659 RAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHH
Confidence 999999999887642 22111 11112222 3444555553 6777777777777765
No 179
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.60 E-value=0.16 Score=52.42 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=100.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhccc---CCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVI---NDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~---~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~ 458 (617)
+..+..|++..++++..|+.....|+.. +.+. +.+...| ..|.+-|....+++.-....+++.+...
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~--------~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGET--------KELAKLG--NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH--------HHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 7778888999999999999988887632 2111 2333334 3456667777888887777777766552
Q ss_pred hh---hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 459 AK---VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---HKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 459 ~~---~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
.. .+..+ .|.+|.|+.+|++....+..++...+..++... + .|+-+ ..--.|+++|. +-+.++++
T Consensus 677 ~~~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lk---s~nKeiRR 748 (975)
T COG5181 677 HRFRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLK---SWNKEIRR 748 (975)
T ss_pred hcccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHH---HhhHHHHH
Confidence 22 12233 566899999999999999999999999988644 3 22222 23345777785 36778999
Q ss_pred HHHHHHHHhcc
Q 007131 532 RAAGALANLAA 542 (617)
Q Consensus 532 ~a~~~L~~l~~ 542 (617)
+|...+..++.
T Consensus 749 ~A~~tfG~Is~ 759 (975)
T COG5181 749 NATETFGCISR 759 (975)
T ss_pred hhhhhhhhHHh
Confidence 99999888874
No 180
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.57 E-value=0.43 Score=50.65 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=112.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+|.+...|++.++.+|.++...+..++....+..+. |+.+- ..-.|+++|++.+.++++.|...+..+|.
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~a----REWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak--- 954 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA----REWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK--- 954 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH----HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 388889999999999999999999998887776532 22222 22468899999999999999999987654
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.|+-.+.+..|++-|+..+...+....-+++-.+.. .|-...|-.+|.+-...+..++--++.+++.+
T Consensus 955 ---aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~---------c~pFtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 955 ---AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET---------CGPFTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh---------cCchhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 221122233344444433332222222222222111 23333333344332345556777777777766
Q ss_pred ccC--CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhc
Q 007131 541 AAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 541 ~~~--~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
-.. .-.+.-+- -..|.|-..|-+.+ .--+..|+.++.+|+....+ .|..+.+++||.
T Consensus 1023 FeyigemskdYiy--av~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg~~g----------~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIY--AVTPLLEDALMDRD-LVHRQTAMNVIKHLALGVPG----------TGCEDALIHLLN 1081 (1172)
T ss_pred HHHHHHHhhhHHH--HhhHHHHHhhcccc-HHHHHHHHHHHHHHhcCCCC----------cCcHHHHHHHHH
Confidence 431 11122221 13344445555443 56677799999999984333 355556665553
No 181
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.38 Score=50.89 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=80.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAI 506 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i 506 (617)
..+-++.+|.+..+-+|..|+.++..+.. .++ ++ ..++|.|++-|.++++.|+.+|+.+++.||. +|.+...
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 44678889999999999999999987765 222 22 2357999999999999999999999999995 5554433
Q ss_pred HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC
Q 007131 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 507 ~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
.-|.+.++|.. +.+.=+....+..+++|+..++
T Consensus 219 ----LAP~ffklltt--SsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 219 ----LAPLFYKLLVT--SSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred ----ccHHHHHHHhc--cCCCeehHHHHHHHhhccccCc
Confidence 34667888863 4444577888899999986554
No 182
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.50 E-value=0.16 Score=44.41 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=95.1
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcC-CcchHHH
Q 007131 430 IRLLLDLAKS--WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSV-GEEHKGA 505 (617)
Q Consensus 430 i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~ 505 (617)
+..++..|.. ..+++|..|.-++..+- +..++...+. +...+. .+...+.+-...+..++..+=. .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3456666654 46788888888888773 3333333221 333333 3333333355566667776653 3466666
Q ss_pred HH-hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchh-HHHHHHHHHHHH
Q 007131 506 IA-DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEG-VQEQAARALANL 582 (617)
Q Consensus 506 i~-~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~-~~~~a~~~L~~l 582 (617)
+. ..|.++.++.++.. ...+..++..++.+|..-|.+...|..+.+ .+++.|.+..+.++++. ++..|+-+|..|
T Consensus 81 l~~~eg~~~~l~~~~~~-~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASR-KSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH--CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 65 47788888888863 357888999999999998887777777776 56699999987655456 788888777653
No 183
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.49 E-value=0.72 Score=45.45 Aligned_cols=183 Identities=18% Similarity=0.079 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---cchHH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVG---EEHKG 504 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~~~~~ 504 (617)
+...+..+.+.+...|+.|...+.++-......+.+.+.- -++.+.+.++.+..+=+..|+.++.-++.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445555666678889999988888776554444443322 267777888876654455565555555432 24455
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC-CCchHHHH-HhCCHHHHHH--HHhcC---------CchhH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVA-LAGGVHALVM--LARSC---------KFEGV 571 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~-~~~~~~~L~~--ll~~~---------~~~~~ 571 (617)
.+.+ ...|.|...+.+ .+....++..++.+|+-++.. ...-..+. -...+..+.. ..+.+ +...+
T Consensus 125 ei~~-~~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHH-HHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 5555 477888888876 344566777777777777642 22212221 0113332222 22221 12457
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
..+|..+-.-|...-+... ..... ...++.|+.+|.+++.+||
T Consensus 203 ~~aAL~aW~lLlt~~~~~~--~~~~~-~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSK--LEDLL-EEALPALSELLDSDDVDVR 245 (309)
T ss_pred HHHHHHHHHHHHhcCCHHH--HHHHH-HHHHHHHHHHhcCCCHHHH
Confidence 7776666555554322211 11211 3469999999999988876
No 184
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=3.3 Score=44.46 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=112.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCC-c--------ccCCchhHHHH---HhhCCHHHHHHHHhcCC-------H
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDE-N--------ASIDCGRAEAV---MKDGGIRLLLDLAKSWR-------E 442 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~-~--------~~~~~~~~~~i---~~~~~i~~Lv~lL~~~~-------~ 442 (617)
..-+.-++++++++...|...=.+++...-+ . .-..|. ...+ .-.+.+|.|+++|.+.+ .
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~-~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW 340 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS-SKYFARQALQDVVPVLLELLTKQDEDDDDDDW 340 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhHHHHHHHhHhhHHHHHHHHhCCCCcccccC
Confidence 5556666788888877776655544321100 0 000010 0112 23467788888886521 1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH----HhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHH
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL----ARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVD 517 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l----L~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ 517 (617)
..-..|-.+|.-++. .++...+++.+.. +++++-.-++.|+.+...+-..+ ..+..=...+++|.++.
T Consensus 341 np~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred cHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 222333333332222 1112224444444 45577788899999999988766 45555566789999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCC-c-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
++. +.+--++..++|+|..++..-+ . -....-.+.+..++.-+.+ ++++-.++||++.+|+
T Consensus 414 lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 414 LMS---DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLA 476 (859)
T ss_pred Hhc---CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHH
Confidence 994 4666788999999999986433 1 1122222334445544444 4799999999999998
No 185
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.43 E-value=0.26 Score=38.93 Aligned_cols=69 Identities=19% Similarity=0.033 Sum_probs=49.8
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
...+++++..+.+.+..+|..||.+|.+++..-.......=...++.|.+++.+.++.|+..| ..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 456789999999999999999999999998643321111113346788888888888877766 455443
No 186
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.40 E-value=0.2 Score=52.95 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK- 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~- 460 (617)
...+..|++.++.++.+|+..+..+|..-...-. -+.+...| ..|.+.|....+++.-....++..+...-.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-----e~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-----EKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-----HHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 6667778899999999999999988743111100 01233333 457788888889988777777666544211
Q ss_pred --hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 461 --VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---HKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 461 --~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
....+ .+-+|.|+.+|++....+++++...+..++... + .|.-+ ..--.|+++|.. .+.+++++|.
T Consensus 875 ~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka---hkK~iRRaa~ 946 (1172)
T KOG0213|consen 875 TKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA---HKKEIRRAAV 946 (1172)
T ss_pred cccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH---HHHHHHHHHH
Confidence 11112 345799999999999999999999999998543 3 23322 233457777753 5668999999
Q ss_pred HHHHHhcc
Q 007131 535 GALANLAA 542 (617)
Q Consensus 535 ~~L~~l~~ 542 (617)
..+..++.
T Consensus 947 nTfG~Iak 954 (1172)
T KOG0213|consen 947 NTFGYIAK 954 (1172)
T ss_pred hhhhHHHH
Confidence 88888874
No 187
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.38 E-value=1.1 Score=49.77 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=116.5
Q ss_pred HHHhhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc----CC----HHHHHHH
Q 007131 423 AVMKDGGIRLLLDLAKSW-----REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS----MN----RLVAEEA 489 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~----~~----~~~~~~a 489 (617)
.+.+.|++..++.++.+- ..+.....+.+|..++.-+.+|..+.+.|+++.|+..|.. .. +++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 467889999999999763 3567777888999999999999999999999999988863 33 4566666
Q ss_pred HHHHHHhcCCcc---h--HHHHHhcC-----C---hHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCC
Q 007131 490 AGGLWNLSVGEE---H--KGAIADAG-----G---VKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 490 ~~~L~nL~~~~~---~--~~~i~~~g-----~---i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
..++-.|..... . -....... . +..+++.+.. ....++.+....+++|-+|+..++.+...+-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 655555543221 1 11111112 2 4445555532 12246789999999999999887775555432 2
Q ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHhccCCCC---CCccccccccCcHHHHHHHhcCCCC
Q 007131 556 VHALVMLARSCKF-EGVQEQAARALANLAAHGDSN---SNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 556 ~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+...+++=.-+.. ..--...+..++.++..-+.+ ...+..+++.|+++..++.+....+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 2332232211100 000122355555555433222 2345677788999988887765443
No 188
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.36 E-value=0.2 Score=39.56 Aligned_cols=90 Identities=18% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHH
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLA 563 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll 563 (617)
+..+..+|+..+..-.....-.-...+++++..+ .+++..+++.|+.+|.|++..-. ..+.. ...+..|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~---~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF---DDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3445556666653322111111134778888888 56899999999999999985433 33332 23456667776
Q ss_pred hcCCchhHHHHHHHHHHHH
Q 007131 564 RSCKFEGVQEQAARALANL 582 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l 582 (617)
.+++ +.|+..| ..|-++
T Consensus 78 ~D~d-~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPD-ENVRSAA-ELLDRL 94 (97)
T ss_pred cCCc-hhHHHHH-HHHHHH
Confidence 6664 6666655 555554
No 189
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=1.1 Score=48.20 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=109.4
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
++..+-++|.+.+.+++.-|+..|..+...++. .+..+. ..+++.|+++|..+++.|+..+..|....
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~----------avqrHr--~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPT----------AVQRHR--STILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcH----------HHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 334555555555556666666666554322221 111221 57788888888889999988888776555
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CcchHHHH-------------HhcCChHHHHHHHhhcC-
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV--GEEHKGAI-------------ADAGGVKALVDLIFKWS- 523 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~~~~~~~i-------------~~~g~i~~L~~ll~~~~- 523 (617)
..+.. ++.|+..|.+.+++.+...+.-+..++. .++++..| +...++..++.++..++
T Consensus 382 Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 382 NVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred cHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCc
Confidence 54443 3557777877777777777777777763 34433222 23345556666665421
Q ss_pred ---------------------CCCHHHHHHHHHHHHHhc---cCC---CchHHHHHhCCHHHHHHHHhc-CCchhHHHHH
Q 007131 524 ---------------------SGGDGVLERAAGALANLA---ADD---KCSMEVALAGGVHALVMLARS-CKFEGVQEQA 575 (617)
Q Consensus 524 ---------------------~~~~~~~~~a~~~L~~l~---~~~---~~~~~i~~~~~~~~L~~ll~~-~~~~~~~~~a 575 (617)
.+.+.+..-|.||++.=. .++ +.-..+.+...+..+.+++.+ ..+..++..|
T Consensus 456 e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ya 535 (866)
T KOG1062|consen 456 ELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYA 535 (866)
T ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHH
Confidence 123344455555555432 111 112233344556677776643 2237889999
Q ss_pred HHHHHHHhcc
Q 007131 576 ARALANLAAH 585 (617)
Q Consensus 576 ~~~L~~l~~~ 585 (617)
..||..|+..
T Consensus 536 l~Al~KLSsr 545 (866)
T KOG1062|consen 536 LTALLKLSSR 545 (866)
T ss_pred HHHHHHHHhh
Confidence 9999999973
No 190
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.59 Score=49.87 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=99.6
Q ss_pred HhhCCHHHHHHHH----hcCCHHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 425 MKDGGIRLLLDLA----KSWREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 425 ~~~~~i~~Lv~lL----~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
.+...++.++.++ ++++..-++.|+-+++.+-..++ .+..-...+++|.+++++.++.--++..++|+|..++..
T Consensus 357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 3444455555555 45677788888888887766544 444444577899999999977777889999999999853
Q ss_pred -cchHH-HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC--CCc----hHHHHHhCCHHHHHH-HHh-----c
Q 007131 500 -EEHKG-AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKC----SMEVALAGGVHALVM-LAR-----S 565 (617)
Q Consensus 500 -~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~--~~~----~~~i~~~~~~~~L~~-ll~-----~ 565 (617)
++.+. .....+.++.++.-| .+.+.+..+++|++.+|+.. +.. ...... ...+.++. +++ +
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL----~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGL----NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHh----hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccc
Confidence 32111 111123444455555 36789999999999999841 111 111222 23334443 443 2
Q ss_pred CCchhHHHHHHHHHHHHhccCC
Q 007131 566 CKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
++...+|..|-.+|..|-..++
T Consensus 512 gnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 512 GNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred cchhhHHHHHHHHHHHHHHcCc
Confidence 3345788888889888876444
No 191
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.32 E-value=0.17 Score=37.33 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCC
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
++.|.+|+.+++..+....-+.+.+.++.++++.+ .++...++-.|..+|.-++...++.+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~--~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAE--NSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHH--hCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 56799999999998877777778899999999997 467778999999999999999888888777653
No 192
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.20 E-value=0.046 Score=56.46 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=106.7
Q ss_pred EEEecCCCC-ccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC-CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCee
Q 007131 107 KLRFRGAES-ADSIIHLQARNLRELSGDYCRKITDATLSVIVARH-EALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184 (617)
Q Consensus 107 ~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~-~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 184 (617)
.+.+..+.. .+.......+.+..|++.+.. +++ +....... ++|+.|+++ .+.+.. +..-...+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~---~N~i~~--l~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLS---DNKIES--LPSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-ccc--Cccccccchhhccccccc---ccchhh--hhhhhhcccccccc
Confidence 456655554 233333355788888888765 444 23333334 389999996 334433 21223458999999
Q ss_pred eccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 185 RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 185 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+++++ .+++ +.......++|+.|+++++ .+++ ... .....|++|.++++..+.. ......++++..+.+..
T Consensus 169 ~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 169 DLSFN-DLSD--LPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSN 241 (394)
T ss_pred ccCCc-hhhh--hhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCC
Confidence 99988 5544 2333225689999999998 4555 222 3556699999998743322 22234567788887777
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+.+... ...+..++.++.|++++|.+....
T Consensus 242 n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 242 NKLEDL--PESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ceeeec--cchhccccccceeccccccccccc
Confidence 655431 345567888999999988755444
No 193
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.04 E-value=0.044 Score=54.49 Aligned_cols=37 Identities=27% Similarity=0.637 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHccCC-hHhHHHHhhhchhHHHhhc
Q 007131 39 DWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGA 75 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~-~~~~~~~~~vck~w~~~~~ 75 (617)
.|++||+|+|..|..+|+ .-|+++.+.||+.||....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 599999999999999996 7899999999999998644
No 194
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=1.4 Score=47.28 Aligned_cols=141 Identities=18% Similarity=0.124 Sum_probs=102.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..+...+-+.++-+-..+.+-|.... -...+++..+++=..++++.+|..|.+.+.-+-...
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P------------~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-- 117 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKP------------DLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-- 117 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCc------------hHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--
Confidence 777777777777777777777777653322 233456677777777788999988877776543222
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
+.+. .+.++.+.+++.++.++..|+-...++=.. ........|.++.|-+++ .+.++.+..+|+.+|..+.
T Consensus 118 ---i~ey-~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll---~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 118 ---ITEY-LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLL---SDSNPMVVANALAALSEIH 188 (734)
T ss_pred ---HHHH-HHHHHHHhccCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHh---cCCCchHHHHHHHHHHHHH
Confidence 1111 357899999999999999888887777433 455566688999999999 4688899999999999998
Q ss_pred cCCC
Q 007131 542 ADDK 545 (617)
Q Consensus 542 ~~~~ 545 (617)
....
T Consensus 189 e~~~ 192 (734)
T KOG1061|consen 189 ESHP 192 (734)
T ss_pred HhCC
Confidence 6543
No 195
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.02 E-value=0.051 Score=48.29 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=37.5
Q ss_pred cCCCCceEeecCCCCCCH--HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHH--HHHHhcC
Q 007131 203 LCPNLTDIGFLDCLNVDE--VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITI--SRLLTSS 277 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~ 277 (617)
..++|.+|.+..| .++. ..+ ..+++|+.|.+.+|.-..-..+..+ ..||.|++|.+-+|+++...= ...+..+
T Consensus 62 ~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEEec
Confidence 3455666666655 3333 122 3445666666665422111112222 245666666666655433221 1122235
Q ss_pred CCCCEEEcc
Q 007131 278 KSLKVLCAL 286 (617)
Q Consensus 278 ~~L~~L~l~ 286 (617)
|+|++||..
T Consensus 140 p~l~~LDF~ 148 (233)
T KOG1644|consen 140 PSLRTLDFQ 148 (233)
T ss_pred CcceEeehh
Confidence 555555554
No 196
>PLN03150 hypothetical protein; Provisional
Probab=93.97 E-value=0.091 Score=57.48 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=59.6
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCC
Q 007131 127 LRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPN 206 (617)
Q Consensus 127 L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 206 (617)
+..|+|+++. ++.. +..-...+++|+.|+|+. + .+... +......+++|+.|+|+++ .++... ......+++
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~--N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~i-P~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSG--N-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSI-PESLGQLTS 491 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCC--C-cccCc-CChHHhCCCCCCEEECCCC-CCCCCC-chHHhcCCC
Confidence 6677777665 3211 222334578888888852 3 34322 2222344788888888887 554322 222335688
Q ss_pred CceEeecCCCCCCH---HHHhc-CcCCCeecccCCCC
Q 007131 207 LTDIGFLDCLNVDE---VALGN-VLSVRFLSVAGTSN 239 (617)
Q Consensus 207 L~~L~l~~~~~~~~---~~l~~-~~~L~~L~l~~~~~ 239 (617)
|+.|++++|. ++. ..+.. ..++..+++.+|..
T Consensus 492 L~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 492 LRILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCEEECcCCc-ccccCChHHhhccccCceEEecCCcc
Confidence 8888888874 332 23333 34667777777643
No 197
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.95 E-value=0.21 Score=53.43 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=119.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH-HhccchhhHHHHHHhCCHHHHHHHHhcCCHHH-HHHHHHHHHHhcCC
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIA-NLSVNAKVAKAVAEEGGINILAVLARSMNRLV-AEEAAGGLWNLSVG 499 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~-~~~a~~~L~nL~~~ 499 (617)
...+..|+.+.|+++.....+..+..+..+|. .++..-+.. ...++++...+....... ...++.++.||+..
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred CccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence 35678899999999998888888888888888 333321111 223455555554433222 45788999999865
Q ss_pred c-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHH-hCCHHHHHHHHhcCCchhHHHHHH
Q 007131 500 E-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVAL-AGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 500 ~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
+ ..|..+...-+++.+-.++ ..+++..++.++.++.||...+.. ...+++ ....+....++... .++...+++
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~---~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELM---TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred chhhHHHHHHHhcchhhHHHh---hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 5 5677788877777766666 358889999999999999987776 334444 33455555566554 367777777
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++..++....+.-.+ +..-....+.++.++.+++.++
T Consensus 649 ~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i~~~~~~~ 686 (748)
T KOG4151|consen 649 GALAAITSVVENHCSR--ILELLEWLEILVRAIQDEDDEI 686 (748)
T ss_pred ccccchhhcchhhhhh--HHHhhcchHHHHHhhcCchhhh
Confidence 7777565433321111 2222345677777777766554
No 198
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.86 E-value=0.77 Score=49.99 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.+.++++-.-..|.+.+...++ ..+. ++..+.+=++++|+.+|..|.+.+.-+=.
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P~---------~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~---- 121 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYLERYAKLKPE---------LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV---- 121 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCHH---------HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh----
Confidence 6667777777788877777777776544332 1222 45677777888999999888888876511
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. .+. ...++++.+++.++++.|+..|+-|+.++=.- .+.-..+.|.+..+..++. +.++.+..+|+.+|..+.
T Consensus 122 ~-el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~---D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 122 K-ELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVA---DSDPIVIANALASLAEID 194 (757)
T ss_pred H-HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhh---CCCchHHHHHHHHHHHhc
Confidence 1 121 22478899999999999999999999988532 2334455677888888884 588899999999999986
Q ss_pred cC
Q 007131 542 AD 543 (617)
Q Consensus 542 ~~ 543 (617)
..
T Consensus 195 ~e 196 (757)
T COG5096 195 PE 196 (757)
T ss_pred hh
Confidence 54
No 199
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.81 E-value=1.4 Score=43.48 Aligned_cols=169 Identities=19% Similarity=0.187 Sum_probs=107.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~ 459 (617)
..++..+++.++.+|+.|+..|.-.+..+.+ ++ ...++.+...++.+++.++..|+.++.-+... .
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-----------~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKE-----------LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-----------HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 3445778899999999999999877644422 22 22366788888777899999999999988762 1
Q ss_pred hhHHH-------HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHH
Q 007131 460 KVAKA-------VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLE 531 (617)
Q Consensus 460 ~~~~~-------i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 531 (617)
+.-.. ......++.+.+.+.+.+++++..|+..++.|-....... ....+..|+-+-.+ ...++..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 21111 1122336778888888999999999999998865432222 12334444444433 1123345555
Q ss_pred HHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc
Q 007131 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARS 565 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~ 565 (617)
--...+-..|.........+...+++.+-.+...
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5555566667665554555555666777666654
No 200
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.78 E-value=1.7 Score=41.51 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcC-ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 007131 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG-GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (617)
Q Consensus 474 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g-~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 552 (617)
|-++++.-++-++..|+.+|.++...++.|..+-.++ .-..++++++. +-+..+++.+.+-++|.++.++...+.+-.
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3345555555678899999999999999998876644 55668888876 556678999999999999998877644432
Q ss_pred -hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 553 -AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 553 -~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
...+.-++.+.+....+++-..+++++.|++...+. ......+...++.+.+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK-~~I~~~lll~~~~k~v 285 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPK-GYIFSPLLLNDISKCV 285 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhhhHhhcchHHHH
Confidence 235667777777655578899999999999873332 2233444433333333
No 201
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.11 Score=51.97 Aligned_cols=157 Identities=20% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc----c-hh---hHHHHHHhCC-HHHHHHHHh---cCCHHHHHHHHH
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV----N-AK---VAKAVAEEGG-INILAVLAR---SMNRLVAEEAAG 491 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~----~-~~---~~~~i~~~~~-i~~L~~lL~---~~~~~~~~~a~~ 491 (617)
..-..+...+...|.+..-..|+.+++.+.|++. + +. ..+.+ .|. +..+.+.-. ..+..|..+|..
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~--sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF--SGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--HHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 3455666777777777777889999999999986 1 11 12222 111 233333321 245678999999
Q ss_pred HHHHhcCCcc----hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH--HHhCCHHHHHHHHhc
Q 007131 492 GLWNLSVGEE----HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV--ALAGGVHALVMLARS 565 (617)
Q Consensus 492 ~L~nL~~~~~----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i--~~~~~~~~L~~ll~~ 565 (617)
+|.|+..--+ ..-.....|.+..+....- -....+++.+|+.++.||-.++..+-+- .....++.|..++.+
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~--~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVL--TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhccccee--cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 9999975321 0011111223333222211 2245689999999999999877552211 222346777787766
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 007131 566 CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~ 584 (617)
..+-+++.+|+++|.--..
T Consensus 585 ~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 585 CKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hccceEeehhhhhhcCCCC
Confidence 5558999999999876553
No 202
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.67 E-value=4.2 Score=37.60 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=98.9
Q ss_pred hccCCccchHHHHhcChH-HHHHhhcc-----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh
Q 007131 365 AESNPQGLDDFWLKQGAG-LLLSLMQS-----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~-~l~~~l~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 438 (617)
..+.+..... +..+.+| .+..+|.. ..+-.|..+++++..|...++..+ -..+...+.+|..++...
T Consensus 106 vASHpdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV------i~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 106 VASHPDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV------IRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HhcCcchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH------HHHHHHhhhHHHHHHHHh
Confidence 3344444444 4577774 45556642 457789999999999987776542 146678999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccchhhHHHHHHh-------CC-HH-HHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEE-------GG-IN-ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-------~~-i~-~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.+++..+..|+.++..+-.++.+-..+.+. +- +. .+..+.+.+++.+.+.+..+..+|+.++..|..+..
T Consensus 179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999998888764444331 11 22 233344447888999999999999999988877764
No 203
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.63 E-value=0.14 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998864
No 204
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.60 E-value=2 Score=44.90 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=103.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+|.+...|++.+..++.+....+..++....+.... |+.+. .--.|+++|++.+.++++.|...+..+|.
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~----rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV----REWMR---ICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH----HHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 389999999999999999999999888887776432 12222 12468899999999999999999887654
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.|+-.+.+..|++-|+..+...+..+.-++.-.+.. .|-...|-.+|.+-...+..++.-++.+++.+
T Consensus 760 ---aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEY---------CGPFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---------cCchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 221122233344444443333332222222222110 23333333344332334556666666666665
Q ss_pred ccCC--CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 541 AADD--KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 541 ~~~~--~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
-..- ..+.-+- -..|.|-..+.+.+ +--+..|+.++.+|+....+
T Consensus 828 Feyig~~s~dYvy--~itPlleDAltDrD-~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 828 FEYIGQASLDYVY--SITPLLEDALTDRD-PVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHH--HhhHHHHhhhcccc-hHHHHHHHHHHHHHhcCCCC
Confidence 4211 1111111 12233444554443 56677788999999875443
No 205
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.56 E-value=1.1 Score=41.92 Aligned_cols=172 Identities=12% Similarity=0.020 Sum_probs=112.7
Q ss_pred HHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhcc--chhhHHHHHHhCC
Q 007131 398 RAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-----EGLQSEAAKAIANLSV--NAKVAKAVAEEGG 470 (617)
Q Consensus 398 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~ 470 (617)
+|+..+..+|++ |+.|..+.++...--|..+|...+ +.+|-.+.++++.+.. +.+.-..+.+.+.
T Consensus 69 naLaLlQ~vAsh--------petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEi 140 (262)
T PF04078_consen 69 NALALLQCVASH--------PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEI 140 (262)
T ss_dssp HHHHHHHHHHH---------TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTH
T ss_pred HHHHHHHHHHcC--------hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhch
Confidence 455555666554 444578888888877888887543 4578999999999998 4445566667878
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH-------HHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-------GAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-------~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+|..++.++.+++-.+..|.-++..+-.++.+- +.+.. ..++..++.-|. ...++.+.+.+.+|-.-|+.
T Consensus 141 iplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~--~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 141 IPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV--KQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH--HS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc--cCCChhHHHHHHHHHHHHcc
Confidence 999999999988877778888887776655322 22222 234555555554 35688999999999999999
Q ss_pred CCCchHHHHHhCCHHHHH-----HHHhcCCchhHHHHHHHHHHHH
Q 007131 543 DDKCSMEVALAGGVHALV-----MLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 543 ~~~~~~~i~~~~~~~~L~-----~ll~~~~~~~~~~~a~~~L~~l 582 (617)
++..+.++.+ .....|- .+++ +++.++..-...+.|+
T Consensus 219 nprar~aL~~-~LP~~Lrd~~f~~~l~--~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 219 NPRAREALRQ-CLPDQLRDGTFSNILK--DDPSTKRWLQQLLSNL 260 (262)
T ss_dssp STTHHHHHHH-HS-GGGTSSTTTTGGC--S-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-hCcHHHhcHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 9999888875 2211111 1111 2367777777777766
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.53 E-value=0.022 Score=50.54 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCH-HHHHHHHhcCCCCCEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP-ITISRLLTSSKSLKVL 283 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~l~~~~~~~~~L~~L 283 (617)
.....+|+++|.......+..++.|++|.+++| .|+.-. ..+...+|+|..|.+.+|.+-. ..+.. +..||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcch-hccCCcccee
Confidence 455666666664444455666677777777665 443221 2233445667777777754321 11112 2346777777
Q ss_pred EccCCCCCChh
Q 007131 284 CALNCPVLEEE 294 (617)
Q Consensus 284 ~l~~c~~~~~~ 294 (617)
.+-+++.....
T Consensus 119 tll~Npv~~k~ 129 (233)
T KOG1644|consen 119 TLLGNPVEHKK 129 (233)
T ss_pred eecCCchhccc
Confidence 77766644444
No 207
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.38 E-value=0.53 Score=44.29 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHH
Q 007131 526 GDGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~ 604 (617)
.......|+.+|.-++ -+++.|..+.+..++..++.++.......++.++..+|..+..+.+. +...+.+.+|+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~---N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE---NQRDFEELNGLST 180 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH---HHHHHHHhCCHHH
Confidence 4456777889999998 57788999999999999999996554589999999999999887665 5667778999999
Q ss_pred HHHHhcCCC
Q 007131 605 LVQLTRSPH 613 (617)
Q Consensus 605 L~~ll~~~~ 613 (617)
++.++++.+
T Consensus 181 v~~llk~~~ 189 (257)
T PF08045_consen 181 VCSLLKSKS 189 (257)
T ss_pred HHHHHcccc
Confidence 999999864
No 208
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.29 E-value=0.025 Score=58.74 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=25.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 237 (617)
+++|++|+++++ .|+. +..+. .++.|+.|++.+|..-+-.++..++.|+.+++++|
T Consensus 117 ~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 117 LVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred hhcchheecccc-cccc--ccchh-hccchhhheeccCcchhccCCccchhhhcccCCcc
Confidence 555555555554 3322 11111 22345555555552222234444555555555554
No 209
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.24 E-value=0.0085 Score=62.21 Aligned_cols=175 Identities=19% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITD-ATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
+.++..|++.++....-.- ...+++|++|++++.. |++ .++.. ++.|+.|++.+ +.+++. ..+ ..++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~----l~~L~~L~l~~---N~i~~~--~~~-~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLST----LTLLKELNLSG---NLISDI--SGL-ESLK 162 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhh----ccchhhheecc---Ccchhc--cCC-ccch
Confidence 3455556555544332221 2345666666666554 332 11222 33366666642 123221 111 1145
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC--CCCe
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP--KLVG 257 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~--~L~~ 257 (617)
+|+.++++++ .++.-.-.. ...+++++.+.+.++......++..+..+..+++..+....-.++.. .+ +|+.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~----~~~~~L~~ 236 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNE----LVMLHLRE 236 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCccc----chhHHHHH
Confidence 5666666655 232211100 23445666666666533333344434444443443331111111111 11 2677
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++++++.+.... ..+..++++..+++.++....-..
T Consensus 237 l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 237 LYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred HhcccCcccccc--ccccccccccccchhhcccccccc
Confidence 777776554321 223456777777777666554443
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.21 E-value=4.2 Score=41.31 Aligned_cols=130 Identities=19% Similarity=0.155 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhCCHHHHHHHHhcCC------HHH-HHHHHHHHHHhcCCcc
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEGGINILAVLARSMN------RLV-AEEAAGGLWNLSVGEE 501 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~i~~L~~lL~~~~------~~~-~~~a~~~L~nL~~~~~ 501 (617)
+..+++..+++-|-.|.-.+..+..+++ +|..+.+.=|.+.+=+++...+ +.| +.-+..+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666778888888888888877544 5777888888888888887622 233 4567788888888885
Q ss_pred --hHHHHHhcCChHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh
Q 007131 502 --HKGAIADAGGVKALVDLIFKWSSGG----DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 502 --~~~~i~~~g~i~~L~~ll~~~~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~ 564 (617)
....++ +.||.|...+...-+.+ --+...+-.||..++..+.+...++..|+++.+.++-.
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 345555 47999999997622222 23888999999999999999999999999999987543
No 211
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.15 E-value=0.16 Score=30.43 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
+|.+++++.+++++|+..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999864
No 212
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.09 E-value=4.1 Score=42.33 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=110.7
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hh-C--CHHHHHHHHhcC-------------
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KD-G--GIRLLLDLAKSW------------- 440 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~-~--~i~~Lv~lL~~~------------- 440 (617)
.+.++.|--+|.+.....|..|.++|..||...+...+.-....+.++ +. . ..=++..+|+.+
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~ 381 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIP 381 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHH
Confidence 444577788888888888999999999998877665433111112222 10 0 112333334333
Q ss_pred ------CHHHHHHHHHHHHHhccchhh---------HHHHHHhCC-------HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 441 ------REGLQSEAAKAIANLSVNAKV---------AKAVAEEGG-------INILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 441 ------~~~~~~~a~~~L~~ls~~~~~---------~~~i~~~~~-------i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
++..+..+..+++.|+..-+. -..+.+.|| |+++.+++ +..|+.++.|+..|+....
T Consensus 382 sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~-~~~p~skEraLe~LC~fIE 460 (898)
T COG5240 382 SFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM-ENDPDSKERALEVLCTFIE 460 (898)
T ss_pred HHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHh
Confidence 233445555666666652221 123345666 33344444 2566788888888877766
Q ss_pred CcchHHHHHhcCChHHHHHHHhh-cC-----------------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH
Q 007131 499 GEEHKGAIADAGGVKALVDLIFK-WS-----------------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (617)
Q Consensus 499 ~~~~~~~i~~~g~i~~L~~ll~~-~~-----------------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~ 560 (617)
+.++-+..++ ++.+|.+ +| -++.-++.+|+.||...+.+.+.. +........|-
T Consensus 461 Dcey~~I~vr------IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lk 532 (898)
T COG5240 461 DCEYHQITVR------ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALK 532 (898)
T ss_pred hcchhHHHHH------HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHH
Confidence 6554433322 1222221 01 134567788888888777654331 11212223455
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhc
Q 007131 561 MLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+++.+.+ ++++..|..+|.++-.
T Consensus 533 RclnD~D-deVRdrAsf~l~~~~~ 555 (898)
T COG5240 533 RCLNDQD-DEVRDRASFLLRNMRL 555 (898)
T ss_pred HHhhccc-HHHHHHHHHHHHhhhh
Confidence 6777765 8999999999999963
No 213
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.08 E-value=0.1 Score=29.07 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=11.0
Q ss_pred CCCCCeeeccCccCCcHHHHHHHH
Q 007131 178 CPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
|++|++|+|++| .++++++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 345566666655 45555555443
No 214
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.74 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=80.2
Q ss_pred hcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 378 KQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 378 ~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
+.|. .+++.-+..+.-+++..|+..++.|+..+..- ...++..|+.++.++...+|..|..+|..++
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF------------AVRALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4444 78888888888899999999999998766543 1235678999999999999999999999998
Q ss_pred cchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH
Q 007131 457 VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
.+-..++. -++.++..|.+.+++++++....|.+.-.....+
T Consensus 439 ~~l~i~ee-----ql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~ 480 (823)
T KOG2259|consen 439 VHLAIREE-----QLRQILESLEDRSVDVREALRELLKNARVSDLEC 480 (823)
T ss_pred HHheecHH-----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Confidence 76332222 2566777777777777777776666655444333
No 215
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.97 E-value=0.29 Score=39.89 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 471 INILAVLAR-SMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 471 i~~L~~lL~-~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
++.|+++|. +.++.+..-||.=|+.++. .|..|..+-+.|+-..++.+| .+++++++.+|+.|+..+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm---~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELM---NHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT---S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence 788999994 4567778888888888884 567787777788889999999 4689999999999987763
No 216
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.76 E-value=0.07 Score=52.49 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccC-CcHHHHHHHHhcCCCCceEeecCC--CCCCHHH
Q 007131 146 IVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDC--LNVDEVA 222 (617)
Q Consensus 146 i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~-i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~ 222 (617)
..+.+++|..|+|+. ++-.+-...+. ....|++|+++.++. .-.+++.. ...++.+-.+++ ..+...+
T Consensus 430 ~l~~l~kLt~L~L~N----N~Ln~LP~e~~-~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN----NLLNDLPEEMG-SLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred HHHhhhcceeeeccc----chhhhcchhhh-hhhhhheecccccccccchHHHhh----HHHHHHHHhccccccccChHH
Confidence 345578888888852 22221111222 245588888887621 11122211 123444444433 2344567
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 266 (617)
+..+.+|..|++.++. + +.+..+.++|.+|++|++++|.+.
T Consensus 501 l~nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCccC
Confidence 8999999999998862 2 445677789999999999998764
No 217
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.47 E-value=1.2 Score=47.96 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=115.3
Q ss_pred HHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhH-HHHHH-hCCHHHH
Q 007131 397 ERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA-KAVAE-EGGINIL 474 (617)
Q Consensus 397 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~-~~~i~~L 474 (617)
..++.+++||++.++..+ +.+...-+++.+-.++...++-.|+.++..+.||..++..- ..+++ ..+.+..
T Consensus 560 ~E~L~altnLas~s~s~r-------~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 560 FEALEALTNLASISESDR-------QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHhhcccCcchhhH-------HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHH
Confidence 468889999987766553 55777666777777788889999999999999999988753 44444 5567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCcc-hHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHH
Q 007131 475 AVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVA 551 (617)
Q Consensus 475 ~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~ 551 (617)
...+....+....++++++.-++...+ .+..+.+ ..+...++.++. +++.+++...+.+..|+.... +-...+.
T Consensus 633 ~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~---~~~~~~qhrgl~~~ln~~~~~~ei~~~~~ 709 (748)
T KOG4151|consen 633 NLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ---DEDDEIQHRGLVIILNLFEALFEIAEKIF 709 (748)
T ss_pred HHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc---CchhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 777777666777788888886765543 3442443 567777888884 578889988888888854322 2233444
Q ss_pred HhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 552 LAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 552 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
....++.+...-.- +....++.+...|..
T Consensus 710 ~~~~~~~l~~~~~~-~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 710 ETEVMELLSGLQKL-NRAPKREDAAPCLSA 738 (748)
T ss_pred cchHHHHHHHHHHh-hhhhhhhhhhhHHHH
Confidence 44444444432221 224455555555544
No 218
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.16 E-value=8.7 Score=38.22 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=140.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.-|..-+-+.+..++.+..++.+........ -....+... .|.++..|-. +++++-..+-.+|+.++.++
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~--p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSP--PTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB----HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCC--chHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 67777777777888999999999987665444210 012233322 1344444433 26778888888999999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCcchHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL-~~~~~~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.....+.....+..+.+....++=++...|..++..+ +.++.....+... ..+...-.+| .+++--.++.++.
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll---~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL---ESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC---T-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc---cCCCeEeehhhHH
Confidence 9888888887888999999889999999999999886 4555666666653 3445566677 4578789999999
Q ss_pred HHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.|+.+-.+..+...|... .-+..++.+|++. +..++..|..+..-..+.+..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCC
Confidence 999999999887666543 3367777888876 489999999999988875544
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.04 E-value=0.67 Score=34.23 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhC
Q 007131 396 QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEG 469 (617)
Q Consensus 396 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 469 (617)
.+.|++++.++++....- ..+.+.+.++.++++.... ...+|-.|..+|.-+|.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~--------~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGI--------QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHH--------HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 477899999997654443 3455779999999999764 78899999999999999999998887764
No 220
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.89 E-value=5.2 Score=42.38 Aligned_cols=180 Identities=16% Similarity=0.035 Sum_probs=106.0
Q ss_pred HHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH---hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM---KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 385 ~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~---~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..-.++.+.-|+.+|+.++.+...+. ..+. ....+..++..+. .++..+..++++|.|+..++.+
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s-------~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g 621 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNS-------LFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAG 621 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhh-------hhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHH
Confidence 334444456778889999998876654431 1122 1224445555444 5678889999999999999888
Q ss_pred HHHHHHhCCHHHHHHHH---hc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh--cCCCCHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA---RS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK--WSSGGDGVLERAAG 535 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL---~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~a~~ 535 (617)
++.+... ...+.... +. .+..++.+-+....|.+..- -+.-.+.|+.+.+..++.. .+..+-+.....+.
T Consensus 622 ~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l--~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~ 697 (745)
T KOG0301|consen 622 RELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLL--IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV 697 (745)
T ss_pred HHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 8887654 22222222 22 33444444333344444211 0000114555555554432 13334456778889
Q ss_pred HHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
||.+|+..+....++.+.-.+..+++-+++..+.+.....+
T Consensus 698 AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a 738 (745)
T KOG0301|consen 698 ALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIA 738 (745)
T ss_pred HHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHH
Confidence 99999999989888888788888888776543333333333
No 221
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.88 E-value=18 Score=37.82 Aligned_cols=219 Identities=21% Similarity=0.155 Sum_probs=113.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-- 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-- 459 (617)
|.|-.-+.+..+-++..++++++.++...-.. ... ...+..|-.+|++++...|-.|+++|..||...
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---------~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS---------QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---------HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 44444555566788889999988876332111 111 234567777888888889999999999999732
Q ss_pred -------hhHHHHHHhC-C--HHHHHHHHhcCCHH-------------------HHHHHHHHHHHhcCCcchH-------
Q 007131 460 -------KVAKAVAEEG-G--INILAVLARSMNRL-------------------VAEEAAGGLWNLSVGEEHK------- 503 (617)
Q Consensus 460 -------~~~~~i~~~~-~--i~~L~~lL~~~~~~-------------------~~~~a~~~L~nL~~~~~~~------- 503 (617)
+.-..|.+.+ . .-++..+|+.++++ ....+..++..|+-..+.+
T Consensus 337 kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~F 416 (898)
T COG5240 337 KVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDF 416 (898)
T ss_pred eeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHH
Confidence 2222232211 1 23455555554432 2233456666666433211
Q ss_pred --HHHHhcCChHH---HHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-------hC--------CHHHHHHHH
Q 007131 504 --GAIADAGGVKA---LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AG--------GVHALVMLA 563 (617)
Q Consensus 504 --~~i~~~g~i~~---L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~~--------~~~~L~~ll 563 (617)
..+.+.||.+- +++.+.+.-...++.++.|+..|+-.-.+.+-.+..++ .| .+..+...+
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~ 496 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL 496 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence 12223455432 33333221123455566655555544333332111111 11 122222211
Q ss_pred hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
--. +.-++.+|+.+|...+..... ...-..+...|.+++.+.+++||
T Consensus 497 iLE-N~ivRsaAv~aLskf~ln~~d------~~~~~sv~~~lkRclnD~DdeVR 543 (898)
T COG5240 497 ILE-NNIVRSAAVQALSKFALNISD------VVSPQSVENALKRCLNDQDDEVR 543 (898)
T ss_pred HHh-hhHHHHHHHHHHHHhccCccc------cccHHHHHHHHHHHhhcccHHHH
Confidence 111 247889999999887763221 12223456667778888888876
No 222
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.86 E-value=0.22 Score=50.31 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=69.8
Q ss_pred HhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC
Q 007131 147 VARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV 226 (617)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 226 (617)
...|++++.|+++ +| .++.- ....++|++|.+++|..++. +... ..++|++|++++|..+.. -.
T Consensus 48 ~~~~~~l~~L~Is--~c-~L~sL-----P~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~s----LP 111 (426)
T PRK15386 48 IEEARASGRLYIK--DC-DIESL-----PVLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEISG----LP 111 (426)
T ss_pred HHHhcCCCEEEeC--CC-CCccc-----CCCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcccccc----cc
Confidence 3457999999995 46 44332 22234799999999866422 1111 135899999999865542 12
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC-CCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD-VGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+|++|.++++. ... +..--++|+.|.+.+.. .....++.. --++|++|++++|..+.
T Consensus 112 ~sLe~L~L~~n~-~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII 170 (426)
T ss_pred cccceEEeCCCC-Ccc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc
Confidence 478888886532 211 11122467777775422 111111110 12578899998887553
No 223
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.62 E-value=2.9 Score=43.38 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=124.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH----hcC-CHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA----KSW-REGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL----~~~-~~~~~~~a~~~L~~ls 456 (617)
...+.-|.+..+.....|+..+..+|...- -.+..|.|++.+ ..+ -..++.++..++.+++
T Consensus 97 ~~al~aL~s~epr~~~~Aaql~aaIA~~El--------------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 97 GMALRALKSPEPRFCTMAAQLLAAIARMEL--------------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhC--------------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 455566677778888888888887764322 233445554444 333 3457888899999988
Q ss_pred cchhhHHHHHHhCCH-HHHH-HHHhc-CCHHHHHHHHHHHHH-hcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHH
Q 007131 457 VNAKVAKAVAEEGGI-NILA-VLARS-MNRLVAEEAAGGLWN-LSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLE 531 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i-~~L~-~lL~~-~~~~~~~~a~~~L~n-L~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 531 (617)
....-...+...+.+ -.++ ..++. .+..++..|+.+|.+ +-+ .+..+..++-.-.+++..-+ +..++.+++.
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQH 239 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHH
Confidence 855544444444442 2333 33444 445778888999887 332 34444444433444444332 3567889999
Q ss_pred HHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC-CCCCCcccc------------cc
Q 007131 532 RAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG-DSNSNNSAV------------GQ 597 (617)
Q Consensus 532 ~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~------------~~ 597 (617)
+|.+||..+-+-. .--....+.-......+.+++.+ +++...|..--..+|... ++....+.. ..
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aa 318 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAA 318 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHH
Confidence 9999998875321 11112233222333445666764 899998888777777522 111100000 00
Q ss_pred ccCcHHHHHHHhcCCCCC
Q 007131 598 EAGALEALVQLTRSPHEG 615 (617)
Q Consensus 598 ~~g~~~~L~~ll~~~~~~ 615 (617)
-+.++|.|+.+|...+++
T Consensus 319 v~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 319 VADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 134788999988875554
No 224
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=3.8 Score=43.87 Aligned_cols=158 Identities=19% Similarity=0.094 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~ 509 (617)
+.+-+++.+.+|-+|...+..++- +. ..-...++|..|+.. ..+.+++|+.+|+-+|.-+...+.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~al-Ay-----~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-------- 587 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLAL-AY-----VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-------- 587 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHH-HH-----hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------
Confidence 444455666677777666655432 11 011123346666666 556889999999999998876543
Q ss_pred CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCC
Q 007131 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 510 g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
...+..+.+|.+ +-++-|+.-|+-+|.-.|.+..+++.+- .|-.+..++ .+-|+..|+-++..+..--...
T Consensus 588 ~~~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG~~eAi~------lLepl~~D~-~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 EQLPSTVSLLSE--SYNPHVRYGAAMALGIACAGTGLKEAIN------LLEPLTSDP-VDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred hhchHHHHHHhh--hcChhhhhhHHHHHhhhhcCCCcHHHHH------HHhhhhcCh-HHHHHHHHHHHHHHHHHhcccc
Confidence 366778889974 6688899999999999887766665543 122233333 4678888888877765311111
Q ss_pred CCccccccccCcHHHHHHHhcCCCCC
Q 007131 590 SNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
..-. -.|..+.+.+.+.+++++
T Consensus 659 --~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 659 --LCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred --cCch--HHHHHHHHHHHhhhhhhH
Confidence 0111 135566666677666654
No 225
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.20 E-value=4.6 Score=44.61 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHhhc-c-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQ-S-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~-~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
..++.-+. . .+..++.-|.-.+..+.+.-+... ..+.-..+++.+.+++.+++..|..+|++++..
T Consensus 820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----------~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----------QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred HHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----------chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 45555443 2 456778889999999877665542 112223778888999999999999999999982
Q ss_pred hh-----hHHHHHHh-CC----HHHHHHHHhcCCHHHHH----HHHHHHHHhcCCc-ch-HHHHHh----------cCCh
Q 007131 459 AK-----VAKAVAEE-GG----INILAVLARSMNRLVAE----EAAGGLWNLSVGE-EH-KGAIAD----------AGGV 512 (617)
Q Consensus 459 ~~-----~~~~i~~~-~~----i~~L~~lL~~~~~~~~~----~a~~~L~nL~~~~-~~-~~~i~~----------~g~i 512 (617)
-+ ..+.|... .- +-.|-+.+.....+... ..+..|.+=+.+. +. |..+.| ...+
T Consensus 889 l~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLl 968 (1233)
T KOG1824|consen 889 LPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLL 968 (1233)
T ss_pred hHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHH
Confidence 11 12222110 00 12233333333222222 2222233223221 21 222211 1344
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|.|-..+ .++.+..+..++.++...-.+.+.+........+..+..++++++ .+|+..|..++-..+.
T Consensus 969 pkL~~~~---~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpD-l~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 969 PKLKLLL---RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPD-LEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHh---cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHc
Confidence 5555555 456667777777777666555555444444456677888888886 8999999999988775
No 226
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.15 E-value=3.3 Score=38.74 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=35.5
Q ss_pred hHHHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 381 AGLLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 381 i~~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
++.+++.+. +..+-+|..|..+|..+. ..+..+.+-+..+++-..+++.+-.++..+-
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~------------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIG------------------DPESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhc------------------chhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 377888774 345677888999988653 2223345555555555666666555555543
No 227
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.00 E-value=4.2 Score=46.02 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred hHHHHHhhcc----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 007131 381 AGLLLSLMQS----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANL 455 (617)
Q Consensus 381 i~~l~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l 455 (617)
+|.+++..+. .+|++|..|.-+|..+...+.+ + -...+|.|+..+. ++++.+|..++-+++-+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----------f-ces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----------F-CESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----------H-HHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 3777777743 5799999999999988655422 2 2335789999997 56899999999999988
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.. +..-+.. -+.|.+.|.+.++.+++.|..+|.+|-.. .+++ .|.+..+..++. ++++++..-|
T Consensus 989 av~fpnlie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~---D~~~~IsdlA 1055 (1251)
T KOG0414|consen 989 AVRFPNLIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLE---DPNAEISDLA 1055 (1251)
T ss_pred hhhcccccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhc---CCcHHHHHHH
Confidence 773 3323332 24577888899999999999999999654 2333 688888988885 4777777666
Q ss_pred HHHHHHhcc
Q 007131 534 AGALANLAA 542 (617)
Q Consensus 534 ~~~L~~l~~ 542 (617)
-.-+-.|+.
T Consensus 1056 k~FF~Els~ 1064 (1251)
T KOG0414|consen 1056 KSFFKELSS 1064 (1251)
T ss_pred HHHHHHhhh
Confidence 655555543
No 228
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.76 E-value=0.18 Score=28.00 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCeEEeccCCCCHH
Q 007131 254 KLVGLDVSRTDVGPI 268 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~ 268 (617)
+|++|++++|.++++
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 333333333333333
No 229
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.30 E-value=1.3 Score=40.08 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHhhCCHHHHHHHHhc---------CCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKS---------WREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAG 491 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~---------~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~ 491 (617)
+.+++.||+..|+.+|.. .+.+.+..++.++..|..+..+...+.. .+++..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 567789999999998863 2347888999999999999998888887 555899999999999999999999
Q ss_pred HHHHhc
Q 007131 492 GLWNLS 497 (617)
Q Consensus 492 ~L~nL~ 497 (617)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 230
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=6.7 Score=42.47 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..|..||++.....+..|..-|..+.....+ . ....|.+|+-..+.+.+++...---|..-|....+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence 5677888887777777777655554322221 1 12346677777777777666554433333332221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l 540 (617)
-..+ .|..+=+-|+++|+.++..|+.+|..+=. -++ .|.++..+++ ..+.++-|+..|+-++-.|
T Consensus 105 LALL----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 105 LALL----SINTFQKALKDPNQLIRASALRVLSSIRV------PMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred ceee----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 1111 24555566777777777666666554421 111 1222222222 1345566666666666666
Q ss_pred ccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
=.-+ +.+.++. ..+-.+|.+. .+.|.-.|+.|...+|
T Consensus 171 YsLd~e~k~qL~-----e~I~~LLaD~-splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 171 YSLDPEQKDQLE-----EVIKKLLADR-SPLVVGSAVMAFEEVC 208 (968)
T ss_pred hcCChhhHHHHH-----HHHHHHhcCC-CCcchhHHHHHHHHhc
Confidence 4333 3333322 2222333333 2555555665555555
No 231
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.16 E-value=0.98 Score=40.93 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHhCCHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHH
Q 007131 462 AKAVAEEGGINILAVLARS---------MNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~---------~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
-..+++.||+..|+++|.. .+.+....++.+|..|.....+...+.+ .+++..++..| .+.+..++.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L---~s~~~~~r~ 176 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL---DSPNIKTRK 176 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT-----TTSHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH---CCCCHHHHH
Confidence 4566788999999999874 3346788899999999988877777776 88899999998 468889999
Q ss_pred HHHHHHHHhc
Q 007131 532 RAAGALANLA 541 (617)
Q Consensus 532 ~a~~~L~~l~ 541 (617)
.|+.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 232
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.73 E-value=3.1 Score=37.35 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
++.+|..++.+++-|+..-+ .+++ ..++.+...|.++++.+++.|+.+|..|...+-.+.. ...+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 47788889999988876322 1221 1378899999999999999999999999765421111 122366777784
Q ss_pred hcCCCCHHHHHHHHHHHHHhccC
Q 007131 521 KWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
+++++++..|..++..+...
T Consensus 74 ---D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 ---DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred ---CCCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999865
No 233
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.72 E-value=38 Score=38.01 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=34.3
Q ss_pred hcChHHHHHhhcc-----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQS-----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (617)
Q Consensus 378 ~~~i~~l~~~l~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 438 (617)
..|+..+++++.+ ...+.....+..|...+.. +.+|+.+.+.|+++.|++.|.
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--------~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--------KVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--------HHHHHHHHHcCCHHHHHHHHH
Confidence 3456777888754 2234444555555554332 345688999999999999885
No 234
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.78 E-value=37 Score=38.01 Aligned_cols=167 Identities=18% Similarity=0.148 Sum_probs=97.6
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhccchh--hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc---hH
Q 007131 431 RLLLDLAKSW--REGLQSEAAKAIANLSVNAK--VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE---HK 503 (617)
Q Consensus 431 ~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~---~~ 503 (617)
...++.|... |.++++.|..++..+..+-. .+..+ ...++.+++-| .++-++..|+.|+.-++..+- ..
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~ 646 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLS 646 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehh
Confidence 3444555443 78899999998887655221 11111 22244444444 455678889999999987762 22
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC--CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
... ..+++.+..-+++ ....++...+.++-.|..+ +.......+ -.+..+..++..++ -.+.+.|...|..
T Consensus 647 ~~l--~~il~~l~~flrK---~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesd-lhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 647 PVL--TEILPELASFLRK---NQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESD-LHVTQLAVAFLTT 719 (1233)
T ss_pred hhH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHH-HHHHHHHHHHHHH
Confidence 222 2467778887765 4445555566666555532 222222222 12333444444443 6888899999999
Q ss_pred HhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+....+. ....+..-.++.++.+++++
T Consensus 720 l~~~~ps----~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 720 LAIIQPS----SLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHhcccH----HHHHHhhhhHHHHHHHhhCc
Confidence 8874333 23334566778888888775
No 235
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.61 E-value=4.5 Score=44.52 Aligned_cols=191 Identities=13% Similarity=0.004 Sum_probs=108.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCc--ccCC----chhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDEN--ASID----CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~----~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
..+++.|..+ ++-..++.++.-+.+.+..- +..+ ..+++.+. ...+|.|++...+.....+..=..+|.++
T Consensus 818 ~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 818 EKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4566666542 33344444454443333221 1111 22333322 45678888888755555666666777777
Q ss_pred ccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCC-HHHHHH
Q 007131 456 SVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGG-DGVLER 532 (617)
Q Consensus 456 s~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~~~ 532 (617)
..+-+....+-+. .-.|.|++.|.-++..++..+..++.-+.... .....=+ ...+|.++.+=.+ ++.+ ..++..
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~-~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSD-NDNNMMVVRED 972 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCC-CCcchhHHHHH
Confidence 6654432222122 22577777777788888888888877665332 2222211 2345555554432 3332 568899
Q ss_pred HHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHH
Q 007131 533 AAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 533 a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
|+.||..|++ .+...-.-.+...+..|...|.++. ..+|..|+.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHH
Confidence 9999999998 4544333334455667777777764 6788887765
No 236
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.39 E-value=0.79 Score=47.38 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC--CCCHHHHhc--CcCCCeecccCCCC
Q 007131 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL--NVDEVALGN--VLSVRFLSVAGTSN 239 (617)
Q Consensus 172 ~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~--~~~L~~L~l~~~~~ 239 (617)
+.+....|.+..++|++++-..-+.+..+++..|+|+.|+|++|. .-++..+.+ ...|++|-+.||+-
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 444455677777777776544556666677777777777777762 222233332 34566666666543
No 237
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.24 E-value=0.96 Score=43.77 Aligned_cols=186 Identities=20% Similarity=0.101 Sum_probs=104.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKS----WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~----~~~~~~~~a~~~L~~l 455 (617)
..+...+..=..+.+.-++..++-++...... ..+...+ ....+..++.. ..+..+..++++++|+
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl 137 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPAS--------DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL 137 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHH--------HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHH--------HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Confidence 33444443322233566666676655433222 2332222 24555555543 3577889999999999
Q ss_pred ccchhhHHHHHHhCC--HHHHHHHHhcC----CHHHHHHHHHHHHHhcCCc-chHH-HHHhcCChHHHHHHHhhcCCCCH
Q 007131 456 SVNAKVAKAVAEEGG--INILAVLARSM----NRLVAEEAAGGLWNLSVGE-EHKG-AIADAGGVKALVDLIFKWSSGGD 527 (617)
Q Consensus 456 s~~~~~~~~i~~~~~--i~~L~~lL~~~----~~~~~~~a~~~L~nL~~~~-~~~~-~i~~~g~i~~L~~ll~~~~~~~~ 527 (617)
..++..+..+.+... +-..+..+... +..++..++..+.|+|..- ..+. .=.....+..+++.+.. ...++
T Consensus 138 F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~-~~~d~ 216 (268)
T PF08324_consen 138 FSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSR-EESDE 216 (268)
T ss_dssp TTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHC-CHTSH
T ss_pred hCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-ccCCH
Confidence 999998888865432 22222222223 5778889999999997532 1110 00011133444453322 33688
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhcCCchhHHHHHH
Q 007131 528 GVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
++...++-++++|...++......+. |+...+...-..+.++++++.+.
T Consensus 217 Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 217 EALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 99999999999999766665555543 34344444444444567766554
No 238
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=25 Score=37.88 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=73.7
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
++..+.+.+ ++..|..+|...+..++.-|...+..|+........+... ...++..|. ...+..+++.|+..|.
T Consensus 321 D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLk--terDvSirrravDLLY 394 (938)
T KOG1077|consen 321 DSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLK--TERDVSIRRRAVDLLY 394 (938)
T ss_pred CCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhc--cccchHHHHHHHHHHH
Confidence 334555533 4778888888888888999999999998876666655554 666777776 3567789999999999
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.+|..+..+ .|++ .|++.+.+.+ ..+++..+-=.+-|+
T Consensus 395 ~mcD~~Nak-~IV~-----elLqYL~tAd-~sireeivlKvAILa 432 (938)
T KOG1077|consen 395 AMCDVSNAK-QIVA-----ELLQYLETAD-YSIREEIVLKVAILA 432 (938)
T ss_pred HHhchhhHH-HHHH-----HHHHHHhhcc-hHHHHHHHHHHHHHH
Confidence 998544433 3332 2455555543 455555444344443
No 239
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=3.6 Score=44.32 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..++.-...+++.+|.-|.+.+..+. ..+ +..-...++.+.+++.++-+|..|+-.++++- ...
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~---v~~-----------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~ 152 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLR---VDK-----------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DID 152 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEe---ehH-----------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCC
Confidence 44455555677888777766666542 211 12234578999999999999998888877753 334
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
.+.....|.++.|-.++.+.++.|..+|+.+|..+...+
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 556667777999999999999999999999999997554
No 240
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.50 E-value=5 Score=42.78 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=62.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~ 459 (617)
+..|-+++.+....+|.-|+..++.|++..... +.+..+ ...++..|+ ..|..++..|+..|..++...
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~--------davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSI--------DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchH--------HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 355566666656666666766666665442211 233333 567788888 458889999999999886544
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
. ...|+ ..|++.|...+..+++..+.=.+-|+
T Consensus 401 N-ak~IV-----~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 401 N-AKQIV-----AELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred h-HHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3 44453 44777777777777765544444443
No 241
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.19 E-value=3.2 Score=36.32 Aligned_cols=142 Identities=23% Similarity=0.169 Sum_probs=84.3
Q ss_pred HHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 383 LLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 383 ~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.++..+. ...++++..+.-++..+- +.. ++.. ..-.-+.+-.++.+.+.+-...++.++..+-. .+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~-------~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAA-------REEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHH-------HHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHh-------HHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 3444443 355677888887777662 111 1111 11111222233333344567778888887776 45
Q ss_pred hhHHHHHHhCC-HHHHHHHHh--cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHH-HHHHHHH
Q 007131 460 KVAKAVAEEGG-INILAVLAR--SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG-VLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~-i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~-~~~~a~~ 535 (617)
+....+....| ++.++.++. ..+..++..++.+|..-|.+...|..|.+ .+++-|-+++.. +.++. ++..|+-
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~--~~~~~~ir~~A~v 152 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKN--SKDDSEIRVLAAV 152 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTT--CC-HH-CHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHcc--ccchHHHHHHHHH
Confidence 55566654444 788888988 67778888888888777777665555554 688888888853 34444 6666665
Q ss_pred HHH
Q 007131 536 ALA 538 (617)
Q Consensus 536 ~L~ 538 (617)
+|.
T Consensus 153 ~L~ 155 (157)
T PF11701_consen 153 GLC 155 (157)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 242
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.90 E-value=7.4 Score=41.67 Aligned_cols=105 Identities=19% Similarity=0.076 Sum_probs=69.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
|.+..+++-..+++..+|...+.+|+-++......+.-+-.+-...+..-+.+..+.|+..|+.+|..+-.++.. -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 344455555566788999999999998887333333333344466777777788889999999999888644310 0
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+..++..++.+++ .+++++|++.|+..+.
T Consensus 161 e~~v~n~l~~liq--nDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQ--NDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHh--cCCcHHHHHHHHHhhc
Confidence 1234556677776 5777888887765443
No 243
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=86.88 E-value=11 Score=35.48 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHh-------cC--CHH---HHHHHHHHHHHhccc
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAK-------SW--REG---LQSEAAKAIANLSVN 458 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~-------~~--~~~---~~~~a~~~L~~ls~~ 458 (617)
+++.++.|+..|. ...+.. |.-.-.+. ..|.+..|++=+- .+ .+. -.-.|...+.-+|.+
T Consensus 8 ~~~~Re~Al~eLs---k~r~~~----~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh 80 (262)
T PF04078_consen 8 NPETRENALLELS---KKRESF----PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH 80 (262)
T ss_dssp SHHHHHHHHHHHH---HTCCC-----TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHH---Hhhhcc----cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 5677888866655 333322 11112233 5576666655332 11 122 233455666678889
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
++.|..+.++...--|...|... -+.++-.+.++++.|...+ +.-.-+.+.+.+|..++.|+. +++--+.
T Consensus 81 petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKt 157 (262)
T PF04078_consen 81 PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKT 157 (262)
T ss_dssp TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHH
T ss_pred hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHH
Confidence 99999999988754555555442 2357788899999998643 555666678999999999974 6777778
Q ss_pred HHHHHHHHhccCCCc-------hHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 532 RAAGALANLAADDKC-------SMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~-------~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
.|+.++..+-.++.+ .+.+.. ...+..++.-+...+++++-.++.++-..|+.++
T Consensus 158 vAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 158 VATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 888888887766654 233322 1234455554444445899999999999998643
No 244
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=16 Score=40.91 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=82.0
Q ss_pred HHHHHhhc------c--CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 382 GLLLSLMQ------S--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 382 ~~l~~~l~------~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
+.+++.+. . .++....-|+..+.+|+..-.++..+ +...+.=.++.++..++++---+|..||+++.
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-----~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-----KSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-----HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 55666664 1 34555667778888887443333211 34555556677777888888889999999999
Q ss_pred Hhcc-chhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcc-hHHHHHh--cCChHHHHHHHh
Q 007131 454 NLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEE-HKGAIAD--AGGVKALVDLIF 520 (617)
Q Consensus 454 ~ls~-~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~--~g~i~~L~~ll~ 520 (617)
..+. +=.....+ ..++....+.|. +.+..|+..|+-||..+-.+.+ ....+.. .+.++.|+.+..
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 9984 21122222 224566677777 5666788899999998876553 3233332 234555555554
No 245
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.47 E-value=1.6 Score=40.19 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCC---HHH----HHHHHhc-CCHHHHHHHHHHHHHhcCCcch--HHHHHhcCCh
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGG---INI----LAVLARS-MNRLVAEEAAGGLWNLSVGEEH--KGAIADAGGV 512 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~---i~~----L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~--~~~i~~~g~i 512 (617)
.-|..|..+|+.|+..+.+-+.|...+. ++. |+++|.. +++-.+|.|+..|.+|+..++. +....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3589999999999999998888887765 333 4444433 5667899999999999987743 3444458899
Q ss_pred HHHHHHHhh
Q 007131 513 KALVDLIFK 521 (617)
Q Consensus 513 ~~L~~ll~~ 521 (617)
..|+.-++.
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999964
No 246
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.34 E-value=6.6 Score=39.04 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=127.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch-h-----hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-K-----VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLW 494 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~-----~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~ 494 (617)
..+...+.+..|+..|..-+-+.+..++.+..++-... . ..+.+... .-+.+..++.. +++++.-.+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHH
Confidence 46778899999999999889999999999999988732 1 12223222 12333334433 56777788888899
Q ss_pred HhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-cCCCchHHHHHhCC---HHHHHHHHhcCCchh
Q 007131 495 NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA-ADDKCSMEVALAGG---VHALVMLARSCKFEG 570 (617)
Q Consensus 495 nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~---~~~L~~ll~~~~~~~ 570 (617)
.....+.....+.....+..+.+.+. ..+-++...|..++..+- .+..........+. +.....++.+++ =-
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~---~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-Yv 224 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQ---LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-YV 224 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTT---SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS-HH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhc---CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC-eE
Confidence 98888888888888888888888884 577889999999998864 45555555555443 455666777775 57
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
++..+...|..|-.+.........-+.+..-+..+..+|++++..|
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~I 270 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNI 270 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhh
Confidence 8889999999988754432222223334455666666777765433
No 247
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=7.8 Score=43.58 Aligned_cols=156 Identities=15% Similarity=0.016 Sum_probs=97.5
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcch
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
.+-.++++.|+..|++.+..++-.|+.-++.++...+ . .++ ...|...+.++.- +++..-..|+-+|+.||...=.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 3445677788888888899999999999999998655 1 121 2235556665544 3456777899999999865422
Q ss_pred HHHHHhcCChHHHHHHHhh-----cCCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFK-----WSSGGDGVLERAAGALANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
.....+ .++|.+++.|.. .++....++.+|+.++|.++...+. -.-+++.=.-..|...+.+. +-.++.+|
T Consensus 414 lps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAA 491 (1133)
T KOG1943|consen 414 LPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAA 491 (1133)
T ss_pred chHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHH
Confidence 211111 345555555532 1334567999999999999864322 12233311222233444444 47899999
Q ss_pred HHHHHHHhc
Q 007131 576 ARALANLAA 584 (617)
Q Consensus 576 ~~~L~~l~~ 584 (617)
.+|+.....
T Consensus 492 sAAlqE~VG 500 (1133)
T KOG1943|consen 492 SAALQENVG 500 (1133)
T ss_pred HHHHHHHhc
Confidence 999987764
No 248
>PF13013 F-box-like_2: F-box-like domain
Probab=85.86 E-value=1 Score=36.16 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhch
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCR 68 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck 68 (617)
.+.+||+|++..||.+++..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988888887
No 249
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=12 Score=42.53 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=98.0
Q ss_pred CHHHHHHHHh----cCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcch
Q 007131 429 GIRLLLDLAK----SWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 429 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
..|.+++..+ ..+|++|..|.-+|+.+.. +.+.++ ...+.|+.+|. ++++-++.+++-+++.++....+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4455555553 3478999999989887654 333222 23788999998 58888999999999999875442
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
-. + -.-+.|...| ++.++.+++.|.-+|.+|-.++ .|.--|.+..+..++.+++ ++++..|-.-...|
T Consensus 995 li---e-~~T~~Ly~rL---~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~-~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 LI---E-PWTEHLYRRL---RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPN-AEISDLAKSFFKEL 1062 (1251)
T ss_pred cc---c-hhhHHHHHHh---cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCc-HHHHHHHHHHHHHh
Confidence 11 1 1223344455 5688999999999999997643 2333477888888988885 88888888777777
Q ss_pred hcc
Q 007131 583 AAH 585 (617)
Q Consensus 583 ~~~ 585 (617)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 653
No 250
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.28 E-value=47 Score=33.90 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=71.9
Q ss_pred HHHHHhhccC---CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cC---CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQST---QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SW---REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~---~~~~~~~a~~~L~~ 454 (617)
..|...+.+. .+.+--.|+..+..+..++.... ..+.+.|.++.+++.+. .. +.++....-.++..
T Consensus 109 ~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~-------~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A 181 (379)
T PF06025_consen 109 SSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF-------SILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA 181 (379)
T ss_pred HHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh-------HHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence 4555555442 35666788888888765555443 56889999999999998 43 57788888899999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhc
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARS 480 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~ 480 (617)
|+.+..+.+.+.+.+.++.+++++.+
T Consensus 182 icLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 182 ICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999999988765
No 251
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.23 E-value=0.42 Score=50.83 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=40.7
Q ss_pred CCCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcc
Q 007131 35 NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80 (617)
Q Consensus 35 ~~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w 80 (617)
...+.+..||.|+...||.+|+.++++.+++||+.|+.+..+...|
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 4557899999999999999999999999999999999997655555
No 252
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=28 Score=39.44 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=122.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
++.|.+.++..+-.++=.|+..+..++...+.. .....+..+++++... ++.....||-+|+.||..-
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----------Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----------LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 366666777778889999999999987655422 2333556666655544 4667778899999887621
Q ss_pred hhHHHHHHhCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSM--------NRLVAEEAAGGLWNLSVGEEHK--GAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~--------~~~~~~~a~~~L~nL~~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
-...... ...+|.++.-|..+ ...++.+|+-++|.++...+.. .-+...=+...|+..+ .+.+-.+
T Consensus 412 lLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al---FDrevnc 487 (1133)
T KOG1943|consen 412 LLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL---FDREVNC 487 (1133)
T ss_pred CcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh---cCchhhH
Confidence 1111000 11345555555432 3368999999999998543211 1122111112233444 3567778
Q ss_pred HHHHHHHHHHhccCCCc--------------------------hHHHHHh-CCHHHHHHHH-hc---CCchhHHHHHHHH
Q 007131 530 LERAAGALANLAADDKC--------------------------SMEVALA-GGVHALVMLA-RS---CKFEGVQEQAARA 578 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~--------------------------~~~i~~~-~~~~~L~~ll-~~---~~~~~~~~~a~~~ 578 (617)
+++|..++.....--.+ ...+.+. |....+++-+ .+ ..+..+++.|+++
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 89998888877642111 1122222 3334444422 22 2347999999999
Q ss_pred HHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 579 L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
|.+|+...+.. ...+..++++...-+++.
T Consensus 568 L~~Ls~~~pk~-------~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 568 LHKLSLTEPKY-------LADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred HHHHHHhhHHh-------hcccchhhhhhhhcCCCh
Confidence 99998744331 134556777665544443
No 253
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.99 E-value=23 Score=34.81 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCHHHHH-HHHhcCCHHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chH
Q 007131 428 GGIRLLL-DLAKSWREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHK 503 (617)
Q Consensus 428 ~~i~~Lv-~lL~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~ 503 (617)
+.+..|+ ..++++++.+|+.|+.+|+-.+.-+. .... .++.+...++.++++++..|+.++..+.... +.-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454544 67788899999999999998887433 2222 2677888887788999999999999886432 211
Q ss_pred HHH-------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC
Q 007131 504 GAI-------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544 (617)
Q Consensus 504 ~~i-------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 544 (617)
... .....+..+.+.+. +.+++++..|+..++-|-..+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcC
Confidence 111 11334555666664 357789999999988876543
No 254
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=11 Score=44.21 Aligned_cols=173 Identities=18% Similarity=0.045 Sum_probs=96.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.||.|.+.=-++++.+|.....+=..|..++.....-.-....+.|+.-|.+..-.+++++|.||..|-.+++.-...-.
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 45666666667788888655555445555533322222233466677777777889999999999999987643222211
Q ss_pred -cCChHHHHHHHhhcCCCCHHHHHH---HHHHHHHhcc--CC-C---chHHHHHhCCHHHHHH--HHhcCCchhHHHHHH
Q 007131 509 -AGGVKALVDLIFKWSSGGDGVLER---AAGALANLAA--DD-K---CSMEVALAGGVHALVM--LARSCKFEGVQEQAA 576 (617)
Q Consensus 509 -~g~i~~L~~ll~~~~~~~~~~~~~---a~~~L~~l~~--~~-~---~~~~i~~~~~~~~L~~--ll~~~~~~~~~~~a~ 576 (617)
...-..+...+. +-.+.++++ ++.+|..++. .+ . ...++.+ ..+|.|+. .+ + +-.+++..+.
T Consensus 1079 lpelw~~~fRvmD---DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s-~v~evr~~si 1152 (1702)
T KOG0915|consen 1079 LPELWEAAFRVMD---DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-S-KVNEVRRFSI 1152 (1702)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-c-chHHHHHHHH
Confidence 112233333342 234455544 4556666652 11 1 1222222 34555553 33 2 2479999999
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.++..|+..+.. ...-.-...++.|.+....
T Consensus 1153 ~tl~dl~Kssg~----~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGK----ELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHhchh----hhcchhhHHHHHHHHHccc
Confidence 999999985554 1111224556666665554
No 255
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=84.38 E-value=5.2 Score=41.42 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC-CCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS-GGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
...+++++.+++...+..|..-|..++.+......++...++..|..+++++.. ....+....+.++..+-..+-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456778888888888777999999999999999999999999999999986222 2445666666666665544433222
Q ss_pred HHHhCCHHHHHHHHhc-CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 550 VALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.+...++..+..+..- .-+..+-..|...|.++...++. ....+.+.--++.|+..++..+..+
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~---~~~~v~eev~i~~li~hlq~~n~~i 229 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT---LRQLVAEEVPIETLIRHLQVSNQRI 229 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH---HHHHHHhcCcHHHHHHHHHhcchHH
Confidence 2322333333333321 11256778899999998875543 2344456667888888888766543
No 256
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=84.09 E-value=0.85 Score=38.16 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=16.4
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
.+|.++.|++.+|.+++-.. -+..+|.|+.|++++|+.
T Consensus 75 kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPE--ELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccchhhhhhcchhhhhhchH--HHhhhHHhhhcccccCcc
Confidence 34444444444444333221 133345555555555543
No 257
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.26 E-value=17 Score=38.20 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=80.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
.+..+++-+.+.+..|+...+.+|+-+...-.--......|.+..|.+-+. +..+.++..|+.+|..+-....+-+-
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~---DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF---DREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHhccCChHH
Confidence 466777777788889999999999888755333334444567777777774 46778999999999888654444222
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccc
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 598 (617)
... ..|+..++..++++|+..| |.|+..++...+...+...+
T Consensus 169 ~~~----n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~IlERarD 210 (885)
T COG5218 169 RIV----NLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCILERARD 210 (885)
T ss_pred HHH----HHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHHHHhhh
Confidence 222 3566777877777888765 56777666655544444433
No 258
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.13 E-value=1.6 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=7.9
Q ss_pred CCCeEEeccCCCCHHHHH
Q 007131 254 KLVGLDVSRTDVGPITIS 271 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~ 271 (617)
+|+.|++++|.+++++..
T Consensus 3 ~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 3 SLRELDLSNNKLGDEGAR 20 (28)
T ss_pred ccCEEECCCCCCCHHHHH
Confidence 344444444444444433
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.99 E-value=43 Score=31.67 Aligned_cols=92 Identities=23% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
|..|++-+..++.-.+..++-+++.|-.. -+||.|.+.|.+ ..+++-++..|+.+|+.++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d-~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLD-ETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHh-hhcchHHHHHHHHHHHhhcC--------
Confidence 55566666667666788888888877443 578999999987 66788899999999998753
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...++.|.+++.+.. +-+++.+.-+|..+-.
T Consensus 250 --e~~~~vL~e~~~D~~-~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 --EDCVEVLKEYLGDEE-RVVRESCEVALDMLEY 280 (289)
T ss_pred --HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHH
Confidence 445677788877653 5566666666655543
No 260
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=10 Score=39.43 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch
Q 007131 469 GGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (617)
Q Consensus 469 ~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (617)
|.|..++.. ..+.+++|+.+|+-||.-++..+. ..++..+++|.+ +.+.-++...+-+|.-.|.+...+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~--shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSE--SHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhh--ccchhhhhhhHHHhhhhhcCCccH
Confidence 345666666 556889999999999998887643 467777888874 556778888888887777554432
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
. ++..|-.++.+.. +-|+..|+-++..+..-.... .--. -.++++.+.+++.++++
T Consensus 621 ~------a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q~n~~--Lnp~--v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 V------ATDILEALMYDTN-DFVRQSAMIAVGMILMQCNPE--LNPN--VKRIIKKFNRVIVDKHE 676 (926)
T ss_pred H------HHHHHHHHhhCcH-HHHHHHHHHHHHHHHhhcCcc--cChh--HHHHHHHHHHHHhhhhH
Confidence 2 2234444556554 778888888887765421111 1111 13455666665555443
No 261
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.75 E-value=1.8 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=15.7
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhc
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~ 251 (617)
++|++|++++| .+++++...++..
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 46777777775 5677776666543
No 262
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.40 E-value=56 Score=32.64 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch-hhHHHHHH-hCC-HHHHHHHHhcC-----C--------HHHHHHHHHH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NA-KVAKAVAE-EGG-INILAVLARSM-----N--------RLVAEEAAGG 492 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~-~~~-i~~L~~lL~~~-----~--------~~~~~~a~~~ 492 (617)
++.+.+.|....+.+...+...|..++. +. .....+.. -+. .+.+.+++... . +.++......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888888988888888899999999998 43 33444443 333 56677776431 1 1677666665
Q ss_pred HHHhc-C-CcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHH-hccCCC----chHHHHHhCCHHHHHHHHh
Q 007131 493 LWNLS-V-GEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALAN-LAADDK----CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 493 L~nL~-~-~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~-l~~~~~----~~~~i~~~~~~~~L~~ll~ 564 (617)
+..+- . ++..+..+.+ .+.+..+.+-|. .+..+++...+.+|.. +..++. .|..+.....+..|..+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~---~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR---KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc---CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 55543 2 4467777776 556677777774 4788899999999985 443332 2666777777888888766
Q ss_pred cCCc---hhHHHHHHHHHHHHhccCC
Q 007131 565 SCKF---EGVQEQAARALANLAAHGD 587 (617)
Q Consensus 565 ~~~~---~~~~~~a~~~L~~l~~~~~ 587 (617)
..++ ..+.+.|-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 5531 3889999999999997543
No 263
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.88 E-value=38 Score=35.17 Aligned_cols=183 Identities=17% Similarity=0.065 Sum_probs=106.6
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.+. .+.++..+..++..+..|+-.-... . .-...+..+...+ ....+..+..+..++..++
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~---------~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~--- 258 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDD---------D-DLDEFLDSLLQSISSSEDSELRPQALEILIWIT--- 258 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh---------h-hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHH---
Confidence 5556655 4456778888888888775221111 1 0011222223223 2223444555555544432
Q ss_pred hhHHHHHHhC-----CHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cc-------------hHHHHHhcCChHHHHHHHh
Q 007131 460 KVAKAVAEEG-----GINILAVLARSMNRLVAEEAAGGLWNLSVG-EE-------------HKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 460 ~~~~~i~~~~-----~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~-------------~~~~i~~~g~i~~L~~ll~ 520 (617)
|..+.+.. .++.|+++|.+ +++...|+.++.-|..+ ++ +|+.+.. ..+|.|++..+
T Consensus 259 --KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~ 333 (415)
T PF12460_consen 259 --KALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFK 333 (415)
T ss_pred --HHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHh
Confidence 22222211 14557777755 66777888888877766 21 2444444 36677777775
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 521 KWSSGGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
. .+...+.+.+.+|.++-.+-+....+-+. ..+|.+++-|..++ .+++..+..+|..+..+.
T Consensus 334 ~---~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 E---ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA 396 (415)
T ss_pred h---cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence 3 34347888888999988765543333332 35688888887765 789999999999998743
No 264
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.18 E-value=12 Score=32.19 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=59.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-+.+.++.++..|+..|-.++.++... .+..+...+++..|++++.. .++.++..+..++...+.
T Consensus 40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKR------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 67777788899999999999999998887653 23678889999999999988 588999999999988764
No 265
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.06 E-value=5.9 Score=36.65 Aligned_cols=83 Identities=19% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCChHH---HHHHHhh--cCCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCH
Q 007131 484 LVAEEAAGGLWNLSVGEEHKGAIADAGGVKA---LVDLIFK--WSSGGDGVLERAAGALANLAADDKC--SMEVALAGGV 556 (617)
Q Consensus 484 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~---L~~ll~~--~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~ 556 (617)
.-+..|+.+|..|+..+.|..-+...+-... |+..|.+ +..++.-.++.|+..|.+||..++. +....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3578999999999999888888877554443 3333332 2456777899999999999987765 4444677889
Q ss_pred HHHHHHHhcC
Q 007131 557 HALVMLARSC 566 (617)
Q Consensus 557 ~~L~~ll~~~ 566 (617)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 266
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.66 E-value=20 Score=41.07 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=70.4
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc---
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--- 457 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--- 457 (617)
+.+..-+++ ...+.+..|+..|..|+..-+. ...-...+|-++.++.++..++|..|+.+|..+-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----------e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD----------EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----------HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 444444443 4567789999999999765433 23445678999999999999999999988887654
Q ss_pred --chhhHHHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcC
Q 007131 458 --NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 458 --~~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~ 498 (617)
.+.+...+.++ -+|.|-.++.+. ...++..-|..|..||.
T Consensus 495 ~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 495 DIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred CCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 22233344333 468888888773 34455555666666653
No 267
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.44 E-value=38 Score=37.48 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred HHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhh-
Q 007131 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKV- 461 (617)
Q Consensus 385 ~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~- 461 (617)
+..++.+...++-.|+..|+.+....+.. ..+...+.+...+.+|++.++-+--.|...+..|+. .+..
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~--------~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKA--------TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchh--------hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH
Confidence 33344555667888888899887655333 456678888899999998888777677664444443 1110
Q ss_pred ------------------H----HHHH---H-hCC-----HHHHHHH----HhcCCHHHHHHHHHHHHHhcCCcc--hHH
Q 007131 462 ------------------A----KAVA---E-EGG-----INILAVL----ARSMNRLVAEEAAGGLWNLSVGEE--HKG 504 (617)
Q Consensus 462 ------------------~----~~i~---~-~~~-----i~~L~~l----L~~~~~~~~~~a~~~L~nL~~~~~--~~~ 504 (617)
+ +.|. + .|- ...|++. ..+++.+.+..+++++++|+.--+ ...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 0 1111 1 111 1122222 112323345566666666654221 112
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH---hCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL---AGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~---~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
.+. ..+..++.+.. ++++..++++|+..+..+-.+-. .--.|.. ......+....+..+++.++..|+-++.
T Consensus 885 ~~~--ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 885 FFH--EVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHH--HHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 222 23344444444 57778888888888888754322 2112211 1233444455555555778888887777
Q ss_pred HHh
Q 007131 581 NLA 583 (617)
Q Consensus 581 ~l~ 583 (617)
.+-
T Consensus 961 ei~ 963 (982)
T KOG4653|consen 961 EIQ 963 (982)
T ss_pred HHH
Confidence 664
No 268
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=30 Score=37.57 Aligned_cols=121 Identities=22% Similarity=0.117 Sum_probs=75.1
Q ss_pred CCHHHHHHH-HhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHH
Q 007131 428 GGIRLLLDL-AKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGA 505 (617)
Q Consensus 428 ~~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~ 505 (617)
++|..|+.. ..+.|+++|+.|+-+|.-+...++. -.+..+.+|.+ .|+.|+..|+.+|.--|.+..++..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 345566665 3456899999999999888774431 23556677765 7999999999999988877655555
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHhcCC
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCK 567 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~~~~ 567 (617)
+- .+++| . .+...-|+..|+-+++.+-. .+....++. +..+.+.+.+.+..
T Consensus 626 i~---lLepl---~---~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~--~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 626 IN---LLEPL---T---SDPVDFVRQGALIALAMIMIQQTEQLCPKVN--GFRKQLEKVINDKH 678 (929)
T ss_pred HH---HHhhh---h---cChHHHHHHHHHHHHHHHHHhcccccCchHH--HHHHHHHHHhhhhh
Confidence 42 22222 2 23444567777766666542 222233222 23456666776554
No 269
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.35 E-value=57 Score=30.73 Aligned_cols=139 Identities=21% Similarity=0.069 Sum_probs=78.8
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHhccch-hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 431 RLLLD-LAKSWREGLQSEAAKAIANLSVNA-KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 431 ~~Lv~-lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
+.|+. +-+..+++.+...+..|..++.++ .....+ ++.|..+...+..+...-+...+..+-...+-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 33444 334458999999999999999977 544444 3345555555555554444444444432211100
Q ss_pred cCChHHHHHH--Hh---h--cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH-hcCCchhHHHHHHHHHH
Q 007131 509 AGGVKALVDL--IF---K--WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA-RSCKFEGVQEQAARALA 580 (617)
Q Consensus 509 ~g~i~~L~~l--l~---~--~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~ 580 (617)
+.+..++.. ++ . ..+...+.....+.++..+|...+. .-...++.+..++ ++. ++.++..|..+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 223332222 11 0 1223334555556788888866555 2223467777787 454 4788888998999
Q ss_pred HHhc
Q 007131 581 NLAA 584 (617)
Q Consensus 581 ~l~~ 584 (617)
.||.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 8883
No 270
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.31 E-value=1.1e+02 Score=33.89 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=111.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|..|+.+.+.+.++++-..-.|..-|..+.+- .+ --|..+=+-|+++|+.+|..|.++|..+
T Consensus 74 p~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL---------AL---LSIntfQk~L~DpN~LiRasALRvlSsI------ 135 (968)
T KOG1060|consen 74 PAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL---------AL---LSINTFQKALKDPNQLIRASALRVLSSI------ 135 (968)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc---------ee---eeHHHHHhhhcCCcHHHHHHHHHHHHhc------
Confidence 88888888999998887777777665443332 11 1345677788999999999999988764
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
|..+...=.+-++-++..+..+-|+..|+.|+-.|= .+++.+.++.+ .+-.+| .+.++.|.-.|+.++-.+
T Consensus 136 Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~~LL---aD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 136 RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIKKLL---ADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHHHHh---cCCCCcchhHHHHHHHHh
Confidence 222211101122334444577889999999999884 45565555443 334456 457778888888888777
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
|- .+-.++. +-...+.+++..-+ +.-|..+..+|..-|..
T Consensus 208 CP---erldLIH-knyrklC~ll~dvd-eWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 208 CP---ERLDLIH-KNYRKLCRLLPDVD-EWGQVVLINMLTRYARH 247 (968)
T ss_pred ch---hHHHHhh-HHHHHHHhhccchh-hhhHHHHHHHHHHHHHh
Confidence 63 3334442 45677777776654 55566666666665543
No 271
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.31 E-value=15 Score=42.08 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=83.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC----HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcC
Q 007131 435 DLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG----INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG 510 (617)
Q Consensus 435 ~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~----i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g 510 (617)
.+|.++.+-++..-+..|.-| +.-+++.+. +..|+..|.+.+..++-+=-..+..++.. ....=++..
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~L------C~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~--VG~rs~sey 656 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPL------CVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF--VGWRSVSEY 656 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHH------HHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE--EeeeeHHHH
Confidence 344444444554444444443 233333222 57788888777766664433333333322 111113445
Q ss_pred ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 511 ~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+|.|.+-| .+..+.|...|+++|.-|+..+--+...+. ..++...-+|-+++ .-++..+++.+..++.
T Consensus 657 llPLl~Q~l---tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN-~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 657 LLPLLQQGL---TDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPN-LWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHhc---cCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCch-HHHHHHHHHHHHHHHh
Confidence 677777888 458889999999999999976655333322 24555556667775 8999999999988875
No 272
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=49 Score=38.07 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=106.8
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh---hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhhHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK---DGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAK 463 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~---~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~~~ 463 (617)
++.+..+|..+...|..|....... ...+ ......|..-+++.....+..++.+|..|-. +.++..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~---------~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGE---------GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchh---------hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH
Confidence 3457788999999999886441111 1111 1122344444455556677788888877766 335555
Q ss_pred HHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Cc----chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH-HHH
Q 007131 464 AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV--GE----EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA-AGA 536 (617)
Q Consensus 464 ~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~~----~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a-~~~ 536 (617)
.+.+. |+.++-.++..+...+..|-.+|..++. .. +.+ ....+...+..+..+-.++......+ +-+
T Consensus 735 ~i~k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Iva 808 (1176)
T KOG1248|consen 735 LIPKL--IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVA 808 (1176)
T ss_pred HHHHH--HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 55433 6655555677888899999888888873 11 111 01144444554433111222222222 333
Q ss_pred HHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 537 LANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 537 L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+..+.....+ +... +.+..+.-+|.+. ..++...|.+.+.-++..-+. ....-.....++.+..+.+.
T Consensus 809 i~~il~e~~~---~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 809 ITHILQEFKN---ILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHhc---cccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHHh
Confidence 3333322111 1222 2334444455555 489999999999988863222 11221223356666665554
No 273
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=78.27 E-value=26 Score=38.92 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=103.1
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH-Hhc-CCHHHHHHHHHHHHHhcCCcchHH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-ARS-MNRLVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l-L~~-~~~~~~~~a~~~L~nL~~~~~~~~ 504 (617)
.+.+..|..+......++....+.+|..+..-+.....-.+.-..|.++.+ ++. ++|.+...+-.++..|+...++..
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 455667777777778889999999999988855544444455556777776 443 667777777777777776444444
Q ss_pred HHHhcCChHHHHHHHhhcC-CCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWS-SGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~-~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
-+.+ ..+|.++..|.... .....+..-|+..|.-+.++.+. -....-.-++|.+.++.-++++.++..+|..+|+.+
T Consensus 609 ~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 609 PMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred chHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 4443 48999999996411 11245667777777766654333 222222346777887665555578888888888876
Q ss_pred hc
Q 007131 583 AA 584 (617)
Q Consensus 583 ~~ 584 (617)
-.
T Consensus 688 Is 689 (1005)
T KOG2274|consen 688 IS 689 (1005)
T ss_pred Hh
Confidence 64
No 274
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=78.08 E-value=36 Score=35.34 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=80.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCc------ccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDEN------ASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
..+++++.+ +++...|+.++.-|....+.. ..++..+++++.. ..+|.|++..+..+.+.+..-..+|.++
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 667777766 567788888888876663322 2223444444442 3467777777777777788888888888
Q ss_pred ccchhhHHHHHHhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 456 SVNAKVAKAVAEEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 456 s~~~~~~~~i~~~~-~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
..+-+....+-+.+ -+|.|++.|..++++++..+..+|..+..+.
T Consensus 351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88655333333332 3788899998899999999999999988764
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.07 E-value=17 Score=31.11 Aligned_cols=70 Identities=20% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-|.+.++.++..|+..|-.+..++... .+..+.+.+++..|++++.. .++.++..++.++..-+.
T Consensus 44 ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 44 RALKKRLLSKNPNVQLYALLLLESCVKNCGTH------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999998877543 23678899999999999974 478899999998887664
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.04 E-value=7.7 Score=42.56 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=108.2
Q ss_pred HHHHhhCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhccchhhHHHHHH--------hCCHHHHHHHHhc----C
Q 007131 422 EAVMKDGGIRLLLDLAKSW--------REGLQSEAAKAIANLSVNAKVAKAVAE--------EGGINILAVLARS----M 481 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~--------~~~~~~~a~~~L~~ls~~~~~~~~i~~--------~~~i~~L~~lL~~----~ 481 (617)
..+...+++..++++...+ ..++...|..+|+.+..-++.+..+.. ..||..++..-.- .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 3566778888888887643 356788999999999888887777753 2356555554322 4
Q ss_pred CHHHHHHHHHHHHHhcCCc-ch-----------------------------------HHHHHhcCChHHHHHHHhh--cC
Q 007131 482 NRLVAEEAAGGLWNLSVGE-EH-----------------------------------KGAIADAGGVKALVDLIFK--WS 523 (617)
Q Consensus 482 ~~~~~~~a~~~L~nL~~~~-~~-----------------------------------~~~i~~~g~i~~L~~ll~~--~~ 523 (617)
+++++..|+.++.|+...+ ++ ...+...+||..|+++|.. .+
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 7899999999999886544 22 1223336789999999865 23
Q ss_pred CCCHHHHHHHHHHHHHhccCCCchHHHHHhCC-----HHHHHH--HHhcCC--chhHHHHHHHHHHHHhc
Q 007131 524 SGGDGVLERAAGALANLAADDKCSMEVALAGG-----VHALVM--LARSCK--FEGVQEQAARALANLAA 584 (617)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~-----~~~L~~--ll~~~~--~~~~~~~a~~~L~~l~~ 584 (617)
..-..++..|+.+|.-|+.++..|..+.+... ++.++. ...... +-.....|+..|..+..
T Consensus 755 t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g 824 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQG 824 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhC
Confidence 33456888999999999999998887766443 333333 222222 22344457777766654
No 277
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.33 E-value=23 Score=36.47 Aligned_cols=152 Identities=14% Similarity=0.010 Sum_probs=87.3
Q ss_pred hhCCHHHHHHHH----hcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc
Q 007131 426 KDGGIRLLLDLA----KSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 426 ~~~~i~~Lv~lL----~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~ 500 (617)
+.|.+..++..+ .+++...+..|++.|.|.++..+.+..-...--+..++.-|.+ .+.+|...|..+|.-+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 445554444443 3456789999999999999973333322223235556666555 56788888888877665433
Q ss_pred chHHHHHhcCChH---HHHHHHhhcCCCCHHHHHHHHHHHHHhcc--CCCchHHHHH--hCCHHHHHHHHhcCCchhHHH
Q 007131 501 EHKGAIADAGGVK---ALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVAL--AGGVHALVMLARSCKFEGVQE 573 (617)
Q Consensus 501 ~~~~~i~~~g~i~---~L~~ll~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~ 573 (617)
.+.+.. .+.++ .+..+. .+.+++++.+|..++..|+. +.+.++.+.+ .+....++-.+.+++ .-..
T Consensus 332 ~~~~l~--~~~l~ialrlR~l~---~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~--p~va 404 (533)
T KOG2032|consen 332 SNDDLE--SYLLNIALRLRTLF---DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN--PYVA 404 (533)
T ss_pred hhcchh--hhchhHHHHHHHHH---HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC--hHHH
Confidence 222211 22222 333444 45788999999998888884 3344444443 122223333334332 3445
Q ss_pred HHHHHHHHHhc
Q 007131 574 QAARALANLAA 584 (617)
Q Consensus 574 ~a~~~L~~l~~ 584 (617)
.||+.....|.
T Consensus 405 ~ACr~~~~~c~ 415 (533)
T KOG2032|consen 405 RACRSELRTCY 415 (533)
T ss_pred HHHHHHHHhcC
Confidence 67777766664
No 278
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.21 E-value=70 Score=30.65 Aligned_cols=208 Identities=14% Similarity=0.037 Sum_probs=122.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH------hh-CCHHHHHHHHhcC--CHHHHHHHHHHHH
Q 007131 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM------KD-GGIRLLLDLAKSW--REGLQSEAAKAIA 453 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~------~~-~~i~~Lv~lL~~~--~~~~~~~a~~~L~ 453 (617)
.-+.+|++.++..=..|+..|..+-..-+-. ++..++.+. .. |..+.+..++-++ .....+.+..+|.
T Consensus 11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~---~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~ 87 (262)
T PF14225_consen 11 TAVACLESIHEHEFLEALSLLNKLLDKLDLD---DPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS 87 (262)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence 5567777777666667777666664332211 122222222 12 5556666666554 5566778888888
Q ss_pred Hhccchh--------hHHHHHHhCCHHHHHHHHhcCC----HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh
Q 007131 454 NLSVNAK--------VAKAVAEEGGINILAVLARSMN----RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK 521 (617)
Q Consensus 454 ~ls~~~~--------~~~~i~~~~~i~~L~~lL~~~~----~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~ 521 (617)
.++..++ .+-.+.-.+.+|.++.-+.+++ ......+|..|+.+|.... ...+..++....+
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~ 160 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAK 160 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHh
Confidence 8886322 2333333444677777766655 2344566778888873321 2344444444433
Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccC
Q 007131 522 -WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (617)
Q Consensus 522 -~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g 600 (617)
...+..+....++..+..--. ++ .....+..|++++.++. +.++..+..+|..+-...+-+. . ..+.
T Consensus 161 ~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~-~w~~~~~L~iL~~ll~~~d~~~---~--~~~d 228 (262)
T PF14225_consen 161 GRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGP-PWLRRKTLQILKVLLPHVDMRS---P--HGAD 228 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhccccCCC---C--cchH
Confidence 223445666667666665321 11 12234556888888875 7999999999999876555432 1 4667
Q ss_pred cHHHHHHHhcCC
Q 007131 601 ALEALVQLTRSP 612 (617)
Q Consensus 601 ~~~~L~~ll~~~ 612 (617)
.+.+|.++++.+
T Consensus 229 lispllrlL~t~ 240 (262)
T PF14225_consen 229 LISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHhCCc
Confidence 899999988865
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=76.83 E-value=69 Score=30.35 Aligned_cols=115 Identities=21% Similarity=0.151 Sum_probs=71.1
Q ss_pred hCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHH--------HHH
Q 007131 427 DGGIRLLLDLAKSW-----------REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRL--------VAE 487 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~--------~~~ 487 (617)
...+|.|+++|.+. +......|+.+|+ .+.+..+.++++++++.++.- +.+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa----------q~re~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLA----------QFREERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH----------HHhhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 34567777777642 1122334444443 344567899999999765541 222
Q ss_pred HHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHH-Hhc
Q 007131 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVML-ARS 565 (617)
Q Consensus 488 ~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~l-l~~ 565 (617)
....+|+.++ .|-++.|.+++.+ +..+.-++.+|+.+|..++..+ ..|..+++ .+..++.. +..
T Consensus 100 ~l~~ilasv~-----------~G~~~~L~~li~~-~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~~l~~ 165 (249)
T PF06685_consen 100 DLPRILASVG-----------DGDIEPLKELIED-PDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNYFLER 165 (249)
T ss_pred HHHHHHHHHh-----------CCCHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHHhcc
Confidence 2233333332 4678888888876 5566778999999999998655 45888876 55555553 443
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.11 E-value=13 Score=32.82 Aligned_cols=107 Identities=18% Similarity=0.068 Sum_probs=66.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC--HHHHHHHHhcCC-HHHHHHHHHHHHHhcC----Ccc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSMN-RLVAEEAAGGLWNLSV----GEE 501 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~--i~~L~~lL~~~~-~~~~~~a~~~L~nL~~----~~~ 501 (617)
.+..+..+|+++++..+..++..+..+..... .+.+.+.++ +..++.+|+..+ +.+.+.|+.+|..|-. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34567778888888888888888877766432 345555555 788999998854 4677888888876643 334
Q ss_pred hHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 502 HKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 502 ~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
...++... +.++.+++++. .......++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHH
Confidence 44444432 23334444442 1345556666666554
No 281
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.89 E-value=23 Score=38.08 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcc--ch----hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSV--NA----KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~----~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 504 (617)
|.|.+-|+-.|..+|..|+.++.++-- ++ +..+.+.+. -...|..+|.++-+.++..|...+..+.... .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f---W 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF---W 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---H
Confidence 556667777899999999999988764 33 334444443 2577889999999999887776665554321 1
Q ss_pred HHHhcCC----hHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 505 AIADAGG----VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 505 ~i~~~g~----i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
.++-... +..+.+-+. ++...+++..+...|-.+..++.....+-. ++|.+-..+++. .++|+-++...|.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a--~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~-se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELA--FDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDN-SEKVRVAFVDMLL 327 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhh--hccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhcc-chhHHHHHHHHHH
Confidence 1111112 222222232 455668888888888888877766544433 445555555554 4899999888888
Q ss_pred HHh
Q 007131 581 NLA 583 (617)
Q Consensus 581 ~l~ 583 (617)
.|-
T Consensus 328 ~ik 330 (1005)
T KOG1949|consen 328 KIK 330 (1005)
T ss_pred HHH
Confidence 773
No 282
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.83 E-value=23 Score=30.19 Aligned_cols=70 Identities=21% Similarity=0.126 Sum_probs=57.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l 455 (617)
..+.+-+.+.++.++..|+..|-.++.++... .+..+...+++..|++++.. .++.++..++.++..-
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGER------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 77788888999999999999999998777653 34688899999999999963 3678998888888765
Q ss_pred cc
Q 007131 456 SV 457 (617)
Q Consensus 456 s~ 457 (617)
+.
T Consensus 115 ~~ 116 (139)
T cd03567 115 TL 116 (139)
T ss_pred HH
Confidence 53
No 283
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.82 E-value=13 Score=31.95 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=59.3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCC
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~ 499 (617)
.++.+|.+-|.+.++.++..|+.+|-.++. .......+...+.+..|++++.. .++.|+..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 355677777888899999999999999998 45667788888788999999988 7888999999888877643
No 284
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.61 E-value=22 Score=38.29 Aligned_cols=111 Identities=19% Similarity=0.010 Sum_probs=74.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
-+..+++-..+.+..|+...+..|+-+.....-...-+-.+....+..-+. +..+.|+.+|+-+|..+-..+..-
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~---Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK---DREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHhcCCCCC--
Confidence 456666666678889999999999988875433434444456666666664 467889999999999987432220
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (617)
+..++..+..+++.+++++|+..| |.|++.++...+
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp 196 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLP 196 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccch
Confidence 112345677788887778999876 455555444433
No 285
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.24 E-value=15 Score=38.58 Aligned_cols=109 Identities=21% Similarity=0.157 Sum_probs=72.3
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI 506 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i 506 (617)
.|.+..+++-+.+++..+|..++.+|+-++..-.--+.....|-+..|..-+-+..+.|+..|+.+|..+-....+-...
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 35556667777788899999999999888764332334444555677777777788899999999998775433322222
Q ss_pred HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC
Q 007131 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544 (617)
Q Consensus 507 ~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 544 (617)
+ ...|+.+++ .+++.++++.|+ .|+..++
T Consensus 170 ~----~n~l~~~vq--nDPS~EVRr~al---lni~vdn 198 (885)
T COG5218 170 I----VNLLKDIVQ--NDPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred H----HHHHHHHHh--cCcHHHHHHHHH---HHeeeCC
Confidence 2 225666776 467778888654 4555443
No 286
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.50 E-value=1.1e+02 Score=31.36 Aligned_cols=129 Identities=9% Similarity=0.079 Sum_probs=90.9
Q ss_pred HHHh-hCCHHHHHHHHhcC---CHHHHHHHHHHHHHhccchhhH-HHHHHhCCHHHHHHHHh-c---CCHHHHHHHHHHH
Q 007131 423 AVMK-DGGIRLLLDLAKSW---REGLQSEAAKAIANLSVNAKVA-KAVAEEGGINILAVLAR-S---MNRLVAEEAAGGL 493 (617)
Q Consensus 423 ~i~~-~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~~i~~L~~lL~-~---~~~~~~~~a~~~L 493 (617)
.+++ ......|...++.. .+.+...|+.++..+..+++.. ..+.+.|-++.+++.+. . ++.++....-.++
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 4556 55556666677654 4788999999999999876654 55566777899999988 4 5668888888999
Q ss_pred HHhcCCcchHHHHHhcCChHHHHHHHhhcCC-----CCHHHHHHHHHHHHHhccCCC-chHHHHH
Q 007131 494 WNLSVGEEHKGAIADAGGVKALVDLIFKWSS-----GGDGVLERAAGALANLAADDK-CSMEVAL 552 (617)
Q Consensus 494 ~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~-----~~~~~~~~a~~~L~~l~~~~~-~~~~i~~ 552 (617)
..||-+.+..+.+.+.+.++.+++++.. +. ...+........+-.|.++.+ -|..+++
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s-~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTS-PDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCC-HHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999998853 10 011233344445555555433 3554444
No 287
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.94 E-value=53 Score=35.70 Aligned_cols=130 Identities=15% Similarity=0.015 Sum_probs=83.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
.+|.|...++..+..+++.++..+..++..=+ ...++.-.+|.+-.+-. .+.+..++.+++-|++.+.. .-.+..
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~--~tt~~~vkvn~L~c~~~l~q-~lD~~~ 464 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAF--KTTNLYVKVNVLPCLAGLIQ-RLDKAA 464 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchh--cccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 46777788888888999999999998886533 44455557777777743 56788899999999999881 111222
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+++ -+..+.+..+..+ +.+......+..++....... ..+....++|.++-+...
T Consensus 465 v~d--~~lpi~~~~~~~d-p~iv~~~~~i~~~l~~~~~~g----~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 465 VLD--ELLPILKCIKTRD-PAIVMGFLRIYEALALIIYSG----VEVMAENVLPLLIPLSVA 519 (700)
T ss_pred hHH--HHHHHHHHhcCCC-cHHHHHHHHHHHHHHhhcccc----eeeehhhhhhhhhhhhhc
Confidence 222 3444555555553 788888777777776633221 222234566766665543
No 288
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=73.92 E-value=26 Score=36.79 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCH-HHHHHHHHHHHHhccchhhHHHHHHhCCH
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKAIANLSVNAKVAKAVAEEGGI 471 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~~i 471 (617)
+++|-+-+..|..+.+...... .=.+...+..++++|++.++ .+-.....++.+|+..-+-+-.......+
T Consensus 570 ~elqSN~~~vl~aiir~~~~~i--------e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fi 641 (858)
T COG5215 570 EELQSNYIGVLEAIIRTRRRDI--------EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFI 641 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc--------ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4667777777776654443321 12334466889999988744 45667778888888765544444445678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh
Q 007131 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK 521 (617)
Q Consensus 472 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~ 521 (617)
|.|.+.|...+..+...|++.++.|+..=...-.+........|++.|..
T Consensus 642 Pyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss 691 (858)
T COG5215 642 PYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS 691 (858)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 99999998778888888999988887543222222222345567777754
No 289
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.48 E-value=24 Score=38.93 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=87.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Ccc-------------
Q 007131 436 LAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEE------------- 501 (617)
Q Consensus 436 lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~------------- 501 (617)
.+.++-..++..|...|+++...++.+..+...+.++...+.|++.++-+--.|...+..|+. .++
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSE 814 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 344445678999999999999988777888888888889999988887666666665555542 111
Q ss_pred -------hHHHHHh--------cC-----ChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHH
Q 007131 502 -------HKGAIAD--------AG-----GVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKC--SMEVALAGGVHA 558 (617)
Q Consensus 502 -------~~~~i~~--------~g-----~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~ 558 (617)
.+..+++ .| -...|+....+ -.+++...+..+++.+++||.--.. ...+. ..+..
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~ 892 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQL 892 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHH
Confidence 1111111 00 00111111111 1233555677788888888742211 12222 24455
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 559 LVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 559 L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++.+.+.+++.-++.+|+-++..+-.
T Consensus 893 Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 893 ILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHccCCchhhHHHHHHHHHHHHh
Confidence 66666666667888888888887765
No 290
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.18 E-value=1.5e+02 Score=32.67 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+-..+.+..+-+..+|+.++.+|...... .+.. ++..|--++.++..-+|-.|.++|..+|.
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r----------~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSR----------ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHh----------hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5555666778888999999999988533211 2222 66677777888889999999999999997
No 291
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=73.13 E-value=1.6 Score=36.60 Aligned_cols=81 Identities=17% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
..|+..+|+++ .+.+ .-..+...+|.++.|++.+| .+.+ +.+..++.|+.|++++|+..... .-++. +.+|.
T Consensus 53 ~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p--~vi~~-L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEP--RVIAP-LIKLD 126 (177)
T ss_pred ceEEEEecccc-hhhh-CCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccch--HHHHH-HHhHH
Confidence 45666666655 2211 11234445567777777776 4444 33667777777777776443221 22222 55666
Q ss_pred eEEeccCCC
Q 007131 257 GLDVSRTDV 265 (617)
Q Consensus 257 ~L~l~~~~~ 265 (617)
.|+..++..
T Consensus 127 ~Lds~~na~ 135 (177)
T KOG4579|consen 127 MLDSPENAR 135 (177)
T ss_pred HhcCCCCcc
Confidence 676666543
No 292
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.04 E-value=20 Score=28.26 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=54.5
Q ss_pred hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL 493 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L 493 (617)
..+.+..|++++..+....+..+...+..++.++.....+.+.|+++.|.++=...++..+...-+++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55677888888888877789999999999999999999999999998877776556665555444444
No 293
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.10 E-value=21 Score=32.67 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=91.3
Q ss_pred HHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccchh--hHHHHHHhC
Q 007131 397 ERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-----REGLQSEAAKAIANLSVNAK--VAKAVAEEG 469 (617)
Q Consensus 397 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~ 469 (617)
-+|+..|.-+++..+.+ ..+.++..--.+..+|... .+-+|..+.++++.|..++. ....+....
T Consensus 118 cnaL~lLQclaShPetk--------~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 118 CNALNLLQCLASHPETK--------KVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred HHHHHHHHHHhcCcchh--------eeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 45666677776554433 3555666555556666533 24578899999999998544 455666778
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----HHHHHhcCChHH----HHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEH----KGAIADAGGVKA----LVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~----~~~i~~~g~i~~----L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.||..++++..+++--+.-|+-++..+-.++.. ++.+-+--++.. ++.-+- +.+...+...+++|--.||
T Consensus 190 ivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlV--s~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 190 IVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLV--SLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHHHHHheeec
Confidence 899999999888776677777777766665532 333333223322 332222 3455677788888877777
Q ss_pred cCCCchHHH
Q 007131 542 ADDKCSMEV 550 (617)
Q Consensus 542 ~~~~~~~~i 550 (617)
..+..|..+
T Consensus 268 d~p~aR~lL 276 (315)
T COG5209 268 DKPHARALL 276 (315)
T ss_pred CCHhHHHHH
Confidence 766665554
No 294
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=72.10 E-value=13 Score=39.41 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=59.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~ 460 (617)
..++...+ ++...+.-|+..|......-++ ....++.+++.+..+.+..+|..|...|-.++.+ ++
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~------------l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPD------------LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG------------GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChh------------hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH
Confidence 34444444 4677788888888765432221 2345778999999999999999999999999985 45
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
....+ ++.|+++|.++++.-...+-.+|..|
T Consensus 93 ~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 93 HVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp -HHHH-----HHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 55555 45688999887765444444444433
No 295
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.91 E-value=8.3 Score=30.10 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
....+..|.++.+.+|.++...|+.+..... ...+...+.+..+...|+++++-+--+|..+|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3455667778888899999999999998666 11222234467777788888888999999999999854
No 296
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=71.67 E-value=13 Score=35.97 Aligned_cols=155 Identities=19% Similarity=0.116 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC--HHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARS----MNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~--i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
...+.+.+.+-.++.+--+..+++-++.++.....+...++ ...+..++.. ..+..+--++.++.|+-..+..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 34555556555556677888888888888887766655442 4555555554 35567788999999999888888
Q ss_pred HHHHhcCChHHHHHHHhhcCCC----CHHHHHHHHHHHHHhccC--CCchHHHHHhCCHHHHHHH-HhcCCchhHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFKWSSG----GDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVML-ARSCKFEGVQEQAA 576 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~----~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~~~~L~~l-l~~~~~~~~~~~a~ 576 (617)
..+.+... ..+.+.+....+. +..++..++.++.|+|.. ......=.+...+..+++. .....++++...++
T Consensus 145 ~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 145 QLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 88886322 1333333321222 578999999999999841 1110000111123444442 23324589999999
Q ss_pred HHHHHHhcc
Q 007131 577 RALANLAAH 585 (617)
Q Consensus 577 ~~L~~l~~~ 585 (617)
.+|.+|...
T Consensus 224 vAlGtL~~~ 232 (268)
T PF08324_consen 224 VALGTLLSS 232 (268)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcc
Confidence 999999953
No 297
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.20 E-value=80 Score=36.47 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=94.2
Q ss_pred HhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc----chhh
Q 007131 386 SLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV----NAKV 461 (617)
Q Consensus 386 ~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~----~~~~ 461 (617)
+-.++.+...+...+.+|..|-...+.. ...++... |+.++-.++..+...+..|..+|..|.. .++.
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~~~e-------~~~~i~k~-I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g 775 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLLSAE-------HCDLIPKL-IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG 775 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccHH-------HHHHHHHH-HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc
Confidence 3334444455666666666653322210 01222232 3333333366688889999888888872 1111
Q ss_pred HHHHHHhCCHHHHHHHHhcC--CHHHHHHHH--HHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSM--NRLVAEEAA--GGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGA 536 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~--~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~ 536 (617)
.+. ....|..++..+... .+.....|. -++..+... ...+...+.++.+++.+.- -.+.+.+++..|++.
T Consensus 776 ~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~f 850 (1176)
T KOG1248|consen 776 NEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGF 850 (1176)
T ss_pred ccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111 111345555555543 333333333 333333322 2222333333333333221 146888999999999
Q ss_pred HHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 537 LANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 537 L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+..++..- +....--....++.+..+.+... ..++..+-..|..|..
T Consensus 851 ikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 851 IKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH
Confidence 99988543 33333333345666777666553 5677777777776664
No 298
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=71.03 E-value=4 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHH
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRASL 63 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~~~ 63 (617)
..|..||.|+...|+++|+..|+...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56999999999999999999998653
No 299
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.85 E-value=19 Score=32.91 Aligned_cols=139 Identities=12% Similarity=0.001 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCC---HHHHHHHHhcC--CHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHH
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGG---INILAVLARSM--NRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVD 517 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~---i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ 517 (617)
.-.|...|.-++++++.|..++++.. +-+.+....+. -+.++..+.++++.|..++ +....+.....+|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 34567778888899999999988765 33333333332 2356778899999998765 34455556889999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--------hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--------AGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
+++. +++--+.-|+.++..+-.++.+-.-+.+ ..++..++.-+-+..+.++...|.++-..||.++
T Consensus 197 Ime~---gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 197 IMEL---GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHh---hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 9963 6666667777777777777666322222 1223334443333334677777777766666543
No 300
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.90 E-value=37 Score=32.56 Aligned_cols=144 Identities=12% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 007131 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (617)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~ 509 (617)
.|=..|.++++.+|..|+..|..+...-+. ..+ ...-+..|++...+ .+......|+.++..|...+....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----- 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP-DFL-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----- 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hhc-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----
Confidence 345567788999999999988877663221 111 11124555555443 455556555666666653322111
Q ss_pred CChHHHHHHHhh---cCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 510 GGVKALVDLIFK---WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 510 g~i~~L~~ll~~---~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+....+++.+.. ..+-....+..+...+..+..+. +..+.. .+.+..+++.+....+++.-..+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 112223333221 01223456667777777775432 222222 23456666666655556666666666665543
No 301
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=69.89 E-value=96 Score=34.76 Aligned_cols=182 Identities=12% Similarity=-0.008 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHh
Q 007131 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEE 468 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 468 (617)
++.|...-.|..++...+.....+. .+ ..-.+...+..+..+ .+.++..|+++++.......... ...
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~--------~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p 529 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINP--------QL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQP 529 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccch--------hH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cch
Confidence 4556655566666665432222221 11 111223333444333 45677777777776652211111 113
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchH
Q 007131 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (617)
Q Consensus 469 ~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 548 (617)
+.++.|.++....+.++......+|...+..+.-.....+....|..+.+..+ .++++.+...+--++-.++....+..
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 34667777777788889888899999888665555555666677777777665 66777777777777777765332211
Q ss_pred HHHHhCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhc
Q 007131 549 EVALAGGVHALVMLARSCK---FEGVQEQAARALANLAA 584 (617)
Q Consensus 549 ~i~~~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~ 584 (617)
-+. ...+|.++..+..+. +......|..+|..+-+
T Consensus 609 ~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 609 PMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred chH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 111 123455555554321 13444444444444443
No 302
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=69.45 E-value=32 Score=37.22 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=87.7
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchH
Q 007131 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 425 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
.....+|.|.+-+++.+..+|+.++.++..++..-+ ...++.-.+|.+-.+ ++..+..++.+++.++..+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------ 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------ 457 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------
Confidence 445566777777788889999999999998887444 233344346666666 44567788888888888887
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcC
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC 566 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~ 566 (617)
+.+-...+++.+..+++.-...++.+....+.+..++......+..+..+..+|.++-+...+
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 222233455555555543235677888888888888876555544444446666666655443
No 303
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=69.33 E-value=23 Score=30.31 Aligned_cols=71 Identities=17% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcC
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~ 498 (617)
.++.+|.+-|.+.++.++..|+.+|-.+..+ ......+...+.++.|++++.. .++.|+..++..+.+-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3556777778888999999999999999885 5667788888788999999874 677899999888877764
No 304
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.28 E-value=25 Score=29.97 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=55.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhhHHHHHHhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~ 497 (617)
++.++.+-|.+.++.++..|+.+|-.+.. ....+..+...+.+..|++++.. .++.|+...+..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 55677788888899999999999999988 46677888888888899999953 46788888887776555
No 305
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.11 E-value=42 Score=28.31 Aligned_cols=70 Identities=19% Similarity=0.073 Sum_probs=57.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc---CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS---WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~---~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-+.++++.++..|+.+|-.+..++... .+..+....++..|++++.. .++.++..+..++..-+.
T Consensus 40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67777888899999999999999998877653 23567777888889999975 378899999999987765
No 306
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=68.84 E-value=4.5 Score=20.25 Aligned_cols=12 Identities=25% Similarity=0.157 Sum_probs=6.8
Q ss_pred CCCCEEEccCCC
Q 007131 278 KSLKVLCALNCP 289 (617)
Q Consensus 278 ~~L~~L~l~~c~ 289 (617)
++|++|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 456777777776
No 307
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.78 E-value=82 Score=30.60 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
+...++.|.+.+.+....+...+..|+.. ++.- .++ ...|-.+++-+++....|-..|+.++..+...-.+. +.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--ID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34566677777888888888888888773 3321 222 123566777777788889999999999887543221 11
Q ss_pred hcCChHH-HHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 508 DAGGVKA-LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 508 ~~g~i~~-L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
. .+.. +..++.+...++.-+++.|-.+|..+..+-... ..++.|...+++.. ..++..++....+.
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCFSRC 232 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhcccccc
Confidence 1 2333 334444433445568888888888876532221 12344555566654 56666666554443
No 308
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.28 E-value=39 Score=28.53 Aligned_cols=70 Identities=17% Similarity=0.030 Sum_probs=55.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-C-HHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R-EGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~-~~~~~~a~~~L~~ls~ 457 (617)
..+.+-+.+.++.++..|+..|-.+..++... .+..+....++..|+.++... + +.++..++.++..-+.
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSK------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 67777888899999999999999998877543 236778889999999999875 3 3488888888876554
No 309
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.27 E-value=4.4 Score=34.41 Aligned_cols=32 Identities=38% Similarity=0.332 Sum_probs=22.7
Q ss_pred hCC--HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 468 EGG--INILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 468 ~~~--i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
.|| |++|+++|.+.++++...|+.+|.+...-
T Consensus 91 ~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 91 LGGYNVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -SSTTHHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred cCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 455 99999999999999999999999987643
No 310
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=67.99 E-value=28 Score=37.12 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=42.6
Q ss_pred HhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 377 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
.+..+..++++...++..+|..|...|-.++....+.. ..+ +..|+.+|.++++.....+-.+|..+-
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-------~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-------SKV-----ADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H-------HHH-----HHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH-------hHH-----HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34445888999999999999999999999876654432 233 368888998877665555555554443
Q ss_pred c
Q 007131 457 V 457 (617)
Q Consensus 457 ~ 457 (617)
.
T Consensus 125 ~ 125 (556)
T PF05918_consen 125 K 125 (556)
T ss_dssp H
T ss_pred h
Confidence 3
No 311
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.38 E-value=82 Score=37.49 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=86.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh--HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV--AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKG 504 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~ 504 (617)
+.+..++..|.++...+|..|+.+|..+..-++. ...-++. .+-.-+.+....|+++|+..++... ..++.-.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 3556677777777889999999999999884431 1111122 2223355677789999999988554 3333222
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh-cCCchh-HHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR-SCKFEG-VQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~-~~~~~~-~~~~a~~~L~~l 582 (617)
+.. ..+..-+ .+....|+..|...++-+|..-+.-..+.+ ...++++ ..++++ ++..+..++.++
T Consensus 892 qyY-----~~i~erI---lDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 QYY-----DQIIERI---LDTGVSVRKRVIKILRDICEETPDFSKIVD-----MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHH-----HHHHhhc---CCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 221 1222333 345667899999999999976666444443 2333332 222334 777788777777
Q ss_pred hccCC
Q 007131 583 AAHGD 587 (617)
Q Consensus 583 ~~~~~ 587 (617)
=..+.
T Consensus 959 WF~p~ 963 (1692)
T KOG1020|consen 959 WFTPV 963 (1692)
T ss_pred hccCC
Confidence 65433
No 312
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.08 E-value=30 Score=29.19 Aligned_cols=71 Identities=20% Similarity=0.069 Sum_probs=56.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc---CCHHHHHHHHHHHHHhcCC
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~nL~~~ 499 (617)
++..|.+-|+++++.++..|+.+|-.+..+ +.....+.....+..|+.++.. .++.|+..+...+.+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456777778888999999999999999984 4467777776777789999875 4678999998888877643
No 313
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.03 E-value=83 Score=37.41 Aligned_cols=103 Identities=9% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
..++..+..+...+|..|+.+|.+++..+..- ......-..+-.-+.+....||+.|+..++.... +++
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~v----------L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSV----------LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHh----------hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 55666667778899999999999987554332 2233344455556667778999999999985443 455
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
.-.... +.+.+-..+....|++.+..++..++..
T Consensus 889 ~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 889 LIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 433332 2344445556677888888888888754
No 314
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.83 E-value=85 Score=33.16 Aligned_cols=139 Identities=16% Similarity=0.072 Sum_probs=82.0
Q ss_pred hCCHHHHHHH-HhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHH
Q 007131 427 DGGIRLLLDL-AKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 427 ~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~ 504 (617)
.|++..++.. ..+.++++++.|+-+|.-++.++. +.+...+++|.. .++.|+...+-+|.--+.+...+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3455666665 456689999999999988777543 234556677765 688888888888877666543222
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
. +..|-.++ .+...-++..|+-+++.+.+ +++.-..+. +..+.+.+++.+..++.+-...+.+-.-+
T Consensus 622 a------~diL~~L~---~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~--~I~k~f~~vI~~Khe~glaklGA~laqGi 690 (926)
T COG5116 622 A------TDILEALM---YDTNDFVRQSAMIAVGMILMQCNPELNPNVK--RIIKKFNRVIVDKHESGLAKLGAVLAQGI 690 (926)
T ss_pred H------HHHHHHHh---hCcHHHHHHHHHHHHHHHHhhcCcccChhHH--HHHHHHHHHHhhhhHhHHHHHHHHHHhhh
Confidence 2 22333444 34666788888888877764 233222222 24455666665543333433333333345
Q ss_pred hc
Q 007131 583 AA 584 (617)
Q Consensus 583 ~~ 584 (617)
+.
T Consensus 691 ~~ 692 (926)
T COG5116 691 SE 692 (926)
T ss_pred hh
Confidence 44
No 315
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=66.24 E-value=74 Score=27.84 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=75.8
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHH
Q 007131 428 GGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGA 505 (617)
Q Consensus 428 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~ 505 (617)
..++.|+.+|+.+ +..+|.+++++++.|-.=++.+-.....+. +.- .-...+........ ...+.+ ..++.-..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~--~~~~~~~~~~~~~l-~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSK--SSENSNDESTDISL-PMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Ccc--ccccccccchhhHH-hhccCCCchHHHHHH
Confidence 4567788888876 689999999999999885554444222110 100 00011111111111 111111 12222222
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
-++..|+..|++ ++- ..-...++.++.++-. +... .... ...+|.++..++..+ +..++....-|..|.
T Consensus 86 ----vvi~~L~~iL~D-~sL-s~~h~~vv~ai~~If~~l~~~c-v~~L-~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 86 ----VVINALMRILRD-PSL-SSHHTAVVQAIMYIFKSLGLKC-VPYL-PQVIPIFLRVIRTCP-DSLREFYFQQLADLV 156 (160)
T ss_pred ----HHHHHHHHHHHh-hhh-HHHHHHHHHHHHHHHHhcCcCc-hhHH-HHHhHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 367788888876 221 1223345555555542 2222 2222 247788999998775 588888777777664
No 316
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=65.20 E-value=1.2e+02 Score=33.92 Aligned_cols=209 Identities=16% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|.+...++..++.++.+....+..+-...+ .. .........++.++++-.+....++......+.-++....
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~-v~------g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVND-VI------GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccC-cc------cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 555556666777777777665544311111 10 0234455566666666665556666666666655554322
Q ss_pred HHHHHHhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
...+ .+.+..++.. ..-+++++|+..+..++......... ...++.++..... ++-..+...+.++
T Consensus 512 ~~~~-----~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~--~~~i~k~L~~~~q---~~y~~R~t~l~si 581 (759)
T KOG0211|consen 512 VEFF-----DEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR--LEEIPKLLAMDLQ---DNYLVRMTTLFSI 581 (759)
T ss_pred hHHh-----hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH--HHhhHHHHHHhcC---cccchhhHHHHHH
Confidence 1111 1223333333 33467888887777776432211111 1245555555532 2345555555565
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.-++..- -..+.....++.+..+..++. +.|+-+|+..|..+-.. .....++.-+.+.+..+.++++.+||
T Consensus 582 ~~la~v~--g~ei~~~~Llp~~~~l~~D~v-anVR~nvak~L~~i~~~------L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 582 HELAEVL--GQEITCEDLLPVFLDLVKDPV-ANVRINVAKHLPKILKL------LDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred HHHHHHh--ccHHHHHHHhHHHHHhccCCc-hhhhhhHHHHHHHHHhh------cchHHHHHHHHHHHHHhccCcccchh
Confidence 5554211 123344456677777777664 78999999888887642 12233344555666666666666654
No 317
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=64.85 E-value=1.4e+02 Score=29.08 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=147.1
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
..+|. +.++.-+...+-+.+..++....++-..+-..+.. .++.+. ....+..|++--.. .+++--.+-..++.
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~---tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSP---TVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcch---HHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 34555 77788777777777888888888876555444321 111221 22333333333111 25565566667777
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcC---ChHH-HHHHHhhcCCCCHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAG---GVKA-LVDLIFKWSSGGDGV 529 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g---~i~~-L~~ll~~~~~~~~~~ 529 (617)
...++...+.|.+..........++.++=++...|..+...+-..+ .....+...+ ..+. --.++ .+++--.
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll---~s~Nyvt 228 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLL---RSENYVT 228 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHh---cccceeh
Confidence 7778888888888888888888888888888888888888776544 3444444422 2233 33455 4567778
Q ss_pred HHHHHHHHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 530 LERAAGALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
++.+..+++.+-.+..|...|.+. ..+..++.+|+.+. ..+|..|..+.+-..+.+........++++. -++|
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KL 305 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKL 305 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHH
Confidence 999999999999888886666543 45788889998874 7999999999999887555433333333322 3566
Q ss_pred HHHhcC
Q 007131 606 VQLTRS 611 (617)
Q Consensus 606 ~~ll~~ 611 (617)
++++..
T Consensus 306 l~~l~~ 311 (342)
T KOG1566|consen 306 LELLHD 311 (342)
T ss_pred HHHHHH
Confidence 666554
No 318
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.79 E-value=18 Score=40.19 Aligned_cols=178 Identities=17% Similarity=0.091 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchhh---HH------HHHH----hCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKV---AK------AVAE----EGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~---~~------~i~~----~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
..++.+|+. +++-..|+.++.-+..+.+. +. .+.+ ...+|.|+......+...+..-..+|.++-
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl 895 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVL 895 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHH
Confidence 455666653 44455566666655553321 00 1222 335788888877656566666677777776
Q ss_pred CCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCc--hhHHH
Q 007131 498 VGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKF--EGVQE 573 (617)
Q Consensus 498 ~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~--~~~~~ 573 (617)
.+-..+..+-+ ...+|.|++.| .-.+..++..++.++.-+....+. ...=+ .-.+|.+..+-.+.++ ..+++
T Consensus 896 ~~vP~~vllp~~~~LlPLLLq~L---s~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 896 TNVPKQVLLPQFPMLLPLLLQAL---SMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred hcCCHHhhccchhhHHHHHHHhc---CCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence 54333222222 44666677777 346667778888888777543222 11111 1234555554444332 67999
Q ss_pred HHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.|..+|..|+..-+.+ ...-....++..|...|.++..-||
T Consensus 972 ~ALqcL~aL~~~~P~~---~l~~fr~~Vl~al~k~LdDkKRlVR 1012 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTK---SLLSFRPLVLRALIKILDDKKRLVR 1012 (1030)
T ss_pred HHHHHHHHHhccCCCc---ccccccHHHHHHhhhccCcHHHHHH
Confidence 9999999999843332 1222345678888888877655443
No 319
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=64.64 E-value=62 Score=36.12 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=106.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
...+..-++-++..+.++..++.-+.+++..-+. .....+.++.+.++..+..+.+++.|...+.++...-+......
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~ 314 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVV 314 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhh
Confidence 3334444455566788999999888888875443 56667778999999988888999999888888764322111111
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
....+.+++... +.+..+........+-++..=.. ......-++....+++... .+++.+++.-...++..-.
T Consensus 315 -~~~~~~l~~~~~---d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~-~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 315 -KSLTESLVQAVE---DGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEE-WEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred -hhhhHHHHHHhc---ChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchh-hhhhHHhhcchHHHhhhcC
Confidence 235667777774 46677777777777777632111 1222233455555665543 5666666666666654222
Q ss_pred CCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 588 SNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 588 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
. . ...-+.....++.+..+..+.++.|
T Consensus 388 ~-~-~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 388 A-S-CYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred c-c-cccccchhhhhHHHHHHHhcccchH
Confidence 1 0 1122223444666666666655544
No 320
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=64.27 E-value=5.6 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=11.6
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCC
Q 007131 127 LRELSGDYCRKITDATLSVIVARHE 151 (617)
Q Consensus 127 L~~L~l~~~~~~~~~~l~~i~~~~~ 151 (617)
|+.|+|.......+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555544323334555555444
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=64.03 E-value=24 Score=38.97 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCC
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 470 (617)
+++++..|+.+|.|+.+....++. ..-..+....+-+.. .+... ..... ..+|.. ....+...+|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~---s~i~~v~S~~g~~r~--~l~~~~ks~~l---e~~l~~------mw~~Vr~ndG 740 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRP---STIVAVGSQSGDRRI--FLGAGTKSAKL---EQVLRQ------MWEAVRGNDG 740 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcch---hhhhhccccCCCccc--cccCCCchHHH---HHHHHH------HHHHHhcCcc
Confidence 789999999999998877655531 100111111100000 01000 01111 122222 2456777899
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHhcCCcchHHHHHhcCCh
Q 007131 471 INILAVLARSMNR-----LVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (617)
Q Consensus 471 i~~L~~lL~~~~~-----~~~~~a~~~L~nL~~~~~~~~~i~~~g~i 512 (617)
|..|+++|+..+| .++..|+.+|..|+.+++.|+.+.+.-.+
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence 9999999987443 57889999999999999999988774433
No 322
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=63.96 E-value=1.6e+02 Score=29.38 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=105.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh-hC-CHHHHHHHHhcC-----C--------HHHH
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK-DG-GIRLLLDLAKSW-----R--------EGLQ 445 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~-~i~~Lv~lL~~~-----~--------~~~~ 445 (617)
.+.+...|.+..+.+...++..|..++.-+... .++.+.+ -+ ..+.+-+++... . +.+|
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~------~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGA------LAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHH------HHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 356666777777788888889999887633221 1233432 22 234566665321 1 2778
Q ss_pred HHHHHHHHHhcc--chhhHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHH-hcCCc----chHHHHHhcCChHHHHH
Q 007131 446 SEAAKAIANLSV--NAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWN-LSVGE----EHKGAIADAGGVKALVD 517 (617)
Q Consensus 446 ~~a~~~L~~ls~--~~~~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~n-L~~~~----~~~~~i~~~g~i~~L~~ 517 (617)
...+..+..+-. ++..+..+.+.++ +..+.+-|..+++++....+.+|+. +..++ ..|..+.....+..|+.
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888775555444 5556777776555 6778888888888999999999984 54444 56777888889999999
Q ss_pred HHhh-cCCCCHHHHHHHHHHHHHhccCCC
Q 007131 518 LIFK-WSSGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 518 ll~~-~~~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
+... ...+...+...|-..|..+|.++.
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 7653 011123788888899999987554
No 323
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.93 E-value=89 Score=34.25 Aligned_cols=30 Identities=37% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
|.-+..+|.+.++.+...|+++|.+|+.++
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 566777777777777777777777777665
No 324
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.80 E-value=90 Score=30.36 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHH--HHHHhCCHH----HHHHHHh--------cCCHHHHHHHHHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAK--AVAEEGGIN----ILAVLAR--------SMNRLVAEEAAGGL 493 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~--~i~~~~~i~----~L~~lL~--------~~~~~~~~~a~~~L 493 (617)
-.+|+++.++++.+++++..++.+|.++..+-.... .+.+.|-.+ .+..+|. .....+...|-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 357999999999999999999999999998554333 455665433 4444554 23345667777777
Q ss_pred HHhc
Q 007131 494 WNLS 497 (617)
Q Consensus 494 ~nL~ 497 (617)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7773
No 325
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.37 E-value=2e+02 Score=32.69 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=98.5
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccchhhH
Q 007131 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNAKVA 462 (617)
Q Consensus 384 l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~~~ 462 (617)
+....+++..-.|.+||+.+...+..+-.+ .-.-..++......|. +.+-.++..|+-+|.-+..+.+..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d---------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKD---------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 334446666778999999999886443332 2333445667777777 667889999999999988865533
Q ss_pred -HHHHH--hCCHHHHHHHHhcCCHHHHHHHHH-HHHHhcCC-cchHHHHHhcCChHHHHHHHhh---cCCCCHHHHHHHH
Q 007131 463 -KAVAE--EGGINILAVLARSMNRLVAEEAAG-GLWNLSVG-EEHKGAIADAGGVKALVDLIFK---WSSGGDGVLERAA 534 (617)
Q Consensus 463 -~~i~~--~~~i~~L~~lL~~~~~~~~~~a~~-~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~~~a~ 534 (617)
+.+.. .+.++.|+.+.+..+-+....... .+...+.. ......+.. .......+++.. ..+.+++=...|.
T Consensus 538 ~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~ 616 (1010)
T KOG1991|consen 538 DEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAAS 616 (1010)
T ss_pred hhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHH
Confidence 33322 222455555555422222211111 11111100 011111111 123344555542 1122334455666
Q ss_pred HHHHHhcc---CCCchHHHHH---hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 535 GALANLAA---DDKCSMEVAL---AGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 535 ~~L~~l~~---~~~~~~~i~~---~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
|+|..+.. .-++...+.+ .-..+.+-..+++.- .+.-+.++..+.+++..
T Consensus 617 GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~ 672 (1010)
T KOG1991|consen 617 GILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFL 672 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhh
Confidence 76666653 2233333322 122344444555543 67777777777777654
No 326
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.49 E-value=12 Score=39.07 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=9.7
Q ss_pred HHHHHHhcCCCCCeeeccCc
Q 007131 170 AVKAIALCCPKLKKLRLSGI 189 (617)
Q Consensus 170 ~l~~l~~~~~~L~~L~l~~~ 189 (617)
.+..++...|+|++|+|+++
T Consensus 235 ~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 235 ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hhhHHHHhcchhheeecccc
Confidence 34444444555555555544
No 327
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=62.49 E-value=2e+02 Score=29.85 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh---hCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccchhhHHHHH
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMK---DGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVA 466 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~---~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~ 466 (617)
+..+.+..|+.-|..+....... +.+ ...+..+++.|.+ .++..+..|.++|..+..+...+-.=.
T Consensus 299 e~a~~~k~alsel~~m~~e~sfs----------vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds 368 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFS----------VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS 368 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchh----------HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch
Confidence 34556677777666654443222 222 2345677888887 578889999999999988655332111
Q ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHH-HHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC
Q 007131 467 EEGGINILAVLARSMNRLVAEEAAGG-LWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 467 ~~~~i~~L~~lL~~~~~~~~~~a~~~-L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
..-+|..+++.-++..+++...|... +.-++.....+. |..+..++. ..+.+....++..+--+...-.
T Consensus 369 tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Il---t~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 369 TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLIL---TADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHh---cCcchHHHHHHHHHHHHHhhcC
Confidence 12246667777777777666555544 444454332222 122233332 1333444445555555543222
Q ss_pred chHHH-HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 546 CSMEV-ALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 546 ~~~~i-~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.-+.. +-....|.+++...+. +..|+..|+.+|..+..
T Consensus 439 ~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 439 AEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 21111 1235678888887776 48999999999988764
No 328
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=60.84 E-value=42 Score=28.34 Aligned_cols=70 Identities=19% Similarity=0.088 Sum_probs=54.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcCC--HHHHHHHHHHHHHhcC
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMN--RLVAEEAAGGLWNLSV 498 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~nL~~ 498 (617)
++..|.+-|.++++.++..|+.+|-.+..+ ......+...+.+..|..++.... +.|+..++..+.+-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 445667777888999999999999999985 567778888878899999887732 3488888888776654
No 329
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=60.81 E-value=0.8 Score=34.02 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=26.7
Q ss_pred CCCCCChhHHHHHHhhcCceehhhhhcHHHHHHH
Q 007131 287 NCPVLEEENNISAVKSKGKLLLALFTDIFKALAS 320 (617)
Q Consensus 287 ~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 320 (617)
-|++....|.+|+...+|.+| +...|.+|+..
T Consensus 6 ~CpIt~~lM~dPVi~~~G~ty--er~~I~~~l~~ 37 (73)
T PF04564_consen 6 LCPITGELMRDPVILPSGHTY--ERSAIERWLEQ 37 (73)
T ss_dssp B-TTTSSB-SSEEEETTSEEE--EHHHHHHHHCT
T ss_pred CCcCcCcHhhCceeCCcCCEE--cHHHHHHHHHc
Confidence 489999999999999999999 88888888866
No 330
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=60.05 E-value=47 Score=25.92 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (617)
...+..+ .++.+.++..++..|+.|..... ...+...+.+..+...+++++ +=+-.+|..+|..|+..-
T Consensus 6 ~~al~~L---~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~------ 74 (92)
T PF10363_consen 6 QEALSDL---NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRH------ 74 (92)
T ss_pred HHHHHHc---cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHC------
Confidence 3344555 45778899999999999987666 222222345666777888775 789999999999998621
Q ss_pred cccccccCcHHHHHHHhcCCC
Q 007131 593 SAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 593 ~~~~~~~g~~~~L~~ll~~~~ 613 (617)
...+++.|++...+.+
T Consensus 75 -----p~~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 75 -----PDEVLPILLDEYADPS 90 (92)
T ss_pred -----hHHHHHHHHHHHhCcc
Confidence 1235777877666544
No 331
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.67 E-value=1.3e+02 Score=26.94 Aligned_cols=145 Identities=21% Similarity=0.151 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHh------hCCHHHHHH-HHhcCCHHHHHHHHHHHHHhccchhhHHHHHH
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMK------DGGIRLLLD-LAKSWREGLQSEAAKAIANLSVNAKVAKAVAE 467 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~------~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 467 (617)
+|..|+..|..++...+.. .+ ..++..+.- ...-+.|+. ++.++++.+|..|+.++..|-.+...--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r-~l-~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKR-SL-FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCc-ee-HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4667777777776553322 22 233344432 223344554 56777999999999999988875321111111
Q ss_pred -----hCC---------------HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHHhh-cCC
Q 007131 468 -----EGG---------------INILAVLARS-MNRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFK-WSS 524 (617)
Q Consensus 468 -----~~~---------------i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~L~~ll~~-~~~ 524 (617)
.+. -..|+..|.. .+..+....+.+|..|..... .|. ..|.++.++.-+.. -.+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhc
Confidence 111 1234444444 456677778888888875442 222 23555555544332 123
Q ss_pred CCHHHHHHHHHHHHHhccCC
Q 007131 525 GGDGVLERAAGALANLAADD 544 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~ 544 (617)
.+..++..++.++..+....
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCC
Confidence 66788888888888886543
No 332
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.45 E-value=63 Score=34.97 Aligned_cols=153 Identities=18% Similarity=0.076 Sum_probs=91.0
Q ss_pred hhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccchh---hHHHH----HH-----hCC----HHHHHHHHhcCCHHHHH
Q 007131 426 KDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNAK---VAKAV----AE-----EGG----INILAVLARSMNRLVAE 487 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~---~~~~i----~~-----~~~----i~~L~~lL~~~~~~~~~ 487 (617)
-.|.+..++..+.+. .+.+.+.....|.+++.+.+ +...| .+ .|. ...++++|.+.+-.++-
T Consensus 238 ls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc 317 (1128)
T COG5098 238 LSGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRC 317 (1128)
T ss_pred HHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHH
Confidence 345566666666654 45566667777888877432 11111 11 111 45677888777777777
Q ss_pred HHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCC----CchHHHHHhCCHHHHH
Q 007131 488 EAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADD----KCSMEVALAGGVHALV 560 (617)
Q Consensus 488 ~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~~~~~~L~ 560 (617)
....+.+|+..+.....++++ ..-+..|++++.+ ..+.++-++..|+..+..++.-+ ..|..+. ...+
T Consensus 318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~-----~lv~ 392 (1128)
T COG5098 318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVI-----RLVG 392 (1128)
T ss_pred HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHH-----HHHH
Confidence 777788887755433334444 2244556666544 24578889999999888887432 2233333 3445
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhc
Q 007131 561 MLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.+++.. .-|+.+|...+..|-.
T Consensus 393 r~lqDrs-s~VRrnaikl~SkLL~ 415 (1128)
T COG5098 393 RRLQDRS-SVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHhhhhh-HHHHHHHHHHHHHHHh
Confidence 5555543 6777777777776654
No 333
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=57.01 E-value=86 Score=35.38 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=87.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhc
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADA 509 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~ 509 (617)
+-.-+.+.+..-+..|+..+........ .+.... .|-+..+++. +++.+..+...|+..|..|+..- ..-.... .
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-K 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-H
Confidence 3334445677788888887776665444 222211 1123334444 34467778888888888887532 2211111 3
Q ss_pred CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCC
Q 007131 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 510 g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
+..+.+++.+.+ ....++..+..++-..+.. ..-..+.+.+..++++++ +..+......+.......+..
T Consensus 336 ~v~p~lld~lke---kk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 336 NVFPSLLDRLKE---KKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hhcchHHHHhhh---ccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcCCc
Confidence 577777777754 4555666555555444331 111223455666666664 566655444444333222211
Q ss_pred CCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 590 SNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
...... -.+.++.++....+.+++||
T Consensus 406 ~~~~~t--~~~l~p~~~~~~~D~~~~VR 431 (815)
T KOG1820|consen 406 TVEKET--VKTLVPHLIKHINDTDKDVR 431 (815)
T ss_pred Ccchhh--HHHHhHHHhhhccCCcHHHH
Confidence 111111 12455556656655555554
No 334
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.66 E-value=1.5e+02 Score=26.61 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhccchhhHHHHH------------HhCCH-HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--
Q 007131 444 LQSEAAKAIANLSVNAKVAKAVA------------EEGGI-NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-- 508 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~~~~~~~i~------------~~~~i-~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-- 508 (617)
+|..|..+|..++..-+-|.... ....- ..+.-++.++++.++..|+.+|..|-.+...--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56677777777776533332221 11123 3444456778899999999999988765532222222
Q ss_pred ---cCCh---------------HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc---hHHHHHhCCHHHHHHHHhcCC
Q 007131 509 ---AGGV---------------KALVDLIFKWSSGGDGVLERAAGALANLAADDKC---SMEVALAGGVHALVMLARSCK 567 (617)
Q Consensus 509 ---~g~i---------------~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~~~~~~L~~ll~~~~ 567 (617)
.+.. ..|+..|. ...+..+....+.|+..|..+-+- +..++. ..+..+..++.+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~--~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQ--AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCC
Confidence 1111 22344444 345667888999999999875543 222221 23344445566654
Q ss_pred chhHHHHHHHHHHHHhccCC
Q 007131 568 FEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~ 587 (617)
..++..+..++..+....+
T Consensus 159 -~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 -PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred -CcHHHHHHHHHHHHHcCCC
Confidence 7899999999988876433
No 335
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.55 E-value=1.3e+02 Score=32.74 Aligned_cols=137 Identities=20% Similarity=0.052 Sum_probs=77.2
Q ss_pred CHHHHHHHHhcC----CHHHHHHHHHHHHHhcc----chhhHHHHHHhCCHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 007131 429 GIRLLLDLAKSW----REGLQSEAAKAIANLSV----NAKVAKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNL 496 (617)
Q Consensus 429 ~i~~Lv~lL~~~----~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~nL 496 (617)
.+..+.++++++ .+.++..|+-+++.+.. +.+.+........++.+.+.|.. .+.+-+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456777777653 45566777766666654 22211111112235555555543 3444556678888888
Q ss_pred cCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc-CCchhHHHHH
Q 007131 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS-CKFEGVQEQA 575 (617)
Q Consensus 497 ~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~-~~~~~~~~~a 575 (617)
... ..++.+...+......+..++..|+++|..++...+. ..-+.+..++.+ ..+.++|.+|
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHH
Confidence 653 2444455555311334667999999999988742222 122445555544 3346788777
Q ss_pred HHHHHHH
Q 007131 576 ARALANL 582 (617)
Q Consensus 576 ~~~L~~l 582 (617)
..+|..-
T Consensus 537 ~~~lm~t 543 (574)
T smart00638 537 VLVLMET 543 (574)
T ss_pred HHHHHhc
Confidence 7766654
No 336
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.41 E-value=1.9e+02 Score=27.75 Aligned_cols=179 Identities=15% Similarity=0.049 Sum_probs=100.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCch-hHHHHHhhCCHHHHHHHHhcCC----HHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCG-RAEAVMKDGGIRLLLDLAKSWR----EGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~~i~~~~~i~~Lv~lL~~~~----~~~~~~a~~~L~~ls 456 (617)
+.+.+-+.+. ...+.+...|..|+...+... +++. .|-.+.-.+.+|.++.-+.+++ ...-..++..|+.++
T Consensus 67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~l-ig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPL-IGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHhCccCCC--CcHHHHHHHHHHHhcCCCccc-cCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 5566666554 334566677777765544322 2222 3445555666777777777766 134456667777666
Q ss_pred cchhhHHHHHHhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 457 VNAKVAKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
.... .+++..++..... ...+-...++..|..--. ++.- ...+.-|+.+|.+ +..-++..
T Consensus 144 ~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~~-----~~~l~~Ll~lL~n---~~~w~~~~ 207 (262)
T PF14225_consen 144 EAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDHE-----FQILTFLLGLLEN---GPPWLRRK 207 (262)
T ss_pred HhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chhH-----HHHHHHHHHHHhC---CcHHHHHH
Confidence 2111 1223333333322 223344444444443211 1211 2345568888854 66689999
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++.+|..+-..-+.+.. ...+.+.++.++++.+ ....|..+|.++..
T Consensus 208 ~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99999999866555433 3345688888888753 45667777776654
No 337
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.46 E-value=65 Score=27.44 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=54.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHH---HHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REG---LQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~---~~~~a~~~L~~ls~ 457 (617)
..+.+-|.+.++.++..|+..|-.+..++... .+..+....++..|.+++.+. ... ++..+...+..-+.
T Consensus 45 ~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 45 RALRKRLKHGNPNVQLLALTLLDALVKNCGPR------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 67778888899999999999999998777543 236777888999999988765 333 88888888876554
No 338
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.27 E-value=71 Score=33.09 Aligned_cols=106 Identities=14% Similarity=0.048 Sum_probs=63.3
Q ss_pred cCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 509 AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 509 ~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
.|.+..++..+.. ..+++..++..|+..|.|+++.-+.+..=...-.+..++.-|.++...+|...|+.+|..+.....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 4566665554433 355677899999999999998744332222223455666655555558999999999988876333
Q ss_pred CCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 588 SNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 588 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
+.. ....+ -.+.-.+..+..+.++++|
T Consensus 333 ~~~-l~~~~--l~ialrlR~l~~se~~~~R 359 (533)
T KOG2032|consen 333 NDD-LESYL--LNIALRLRTLFDSEDDKMR 359 (533)
T ss_pred hcc-hhhhc--hhHHHHHHHHHHhcChhhh
Confidence 321 11111 1233445556666666554
No 339
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.22 E-value=1.4e+02 Score=35.72 Aligned_cols=109 Identities=23% Similarity=0.153 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWN-LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~n-L~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
||.|.+.=-+++..++.+.. -+|| |..++.....-.-...+..|+.-| .+..-.++++++-+|..|-...+.-+.
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~y~neIl~eLL~~l---t~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDEYLNEILDELLVNL---TSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 44444444446666666555 4555 455543332222234666666666 456678999999999999876554222
Q ss_pred HHH-hCCHHHHHHHHhcCCchhHHHHH---HHHHHHHhc
Q 007131 550 VAL-AGGVHALVMLARSCKFEGVQEQA---ARALANLAA 584 (617)
Q Consensus 550 i~~-~~~~~~L~~ll~~~~~~~~~~~a---~~~L~~l~~ 584 (617)
.-. ......+.+.+.+=. +.|+++| +.+|..||.
T Consensus 1076 ~e~lpelw~~~fRvmDDIK-EsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIK-ESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 111 012233333333322 5666664 555555553
No 340
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=54.94 E-value=16 Score=39.38 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=89.2
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH
Q 007131 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 425 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
...+.+|.|+++++..+..+|. ..|.++-.. +.....+++...+|.+..-+.+.++.+++.++..+.-|+..=..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 3456889999999999888874 444444332 223445566667899999999999999999999998887532222
Q ss_pred HHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCH-HHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGGV-HALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~-~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
..... +++.+.+ .++++..++.+..-||..++...... ++.+.+ -.+.+-++++- ...+.++..+++.
T Consensus 404 --~Ln~E----llr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf-~paR~a~v~~l~a 473 (690)
T KOG1243|consen 404 --NLNGE----LLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPF-VPARKAGVLALAA 473 (690)
T ss_pred --hhcHH----HHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCC-CCchhhhhHHHhh
Confidence 11111 2233322 14566778888888888877653221 122222 22334444442 4556666666665
Q ss_pred Hhc
Q 007131 582 LAA 584 (617)
Q Consensus 582 l~~ 584 (617)
...
T Consensus 474 t~~ 476 (690)
T KOG1243|consen 474 TQE 476 (690)
T ss_pred ccc
Confidence 544
No 341
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.85 E-value=16 Score=29.32 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHH
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAE 487 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~ 487 (617)
...+...+..||..++.-..+++.|+++.|+.+|...|.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456777888999999999999999999999999888876543
No 342
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.41 E-value=3.6e+02 Score=30.04 Aligned_cols=53 Identities=25% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 525 GGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.+.-++..|+.+|+++...++. +.. ..-.+.+++.+.+ +++++.|...|.++-
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~D-devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDSD-DEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCch-HHHHHHHHHHHHHhh
Confidence 4567788888999988733222 222 2233555777665 899999999999997
No 343
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.32 E-value=69 Score=32.21 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=62.0
Q ss_pred CHHHHHHHHhcC-------CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc----------CCHHHHHHHHH
Q 007131 429 GIRLLLDLAKSW-------REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS----------MNRLVAEEAAG 491 (617)
Q Consensus 429 ~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~----------~~~~~~~~a~~ 491 (617)
.+|-++.++.+. +-......+.++..|..++...-...-.--++.++.++-. ..-.+++.|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 456666666532 4556667778888888877654333333356777777643 12378999999
Q ss_pred HHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 492 GLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 492 ~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.|..++........-.....+..+.+.+.+ +........-|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d-~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLD-PKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcC-CCCCcchhhHHHHHHHHh
Confidence 999998433221111222233455666654 333333355555555544
No 344
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=53.15 E-value=74 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcC--ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g--~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 551 (617)
+-.|..++..+...+.....+.+.+ .+..|++++.....-...++..|+.+|..++........|+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4445556666666667778888766 99999999975333456799999999999998665544443
No 345
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.03 E-value=4e+02 Score=30.36 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=104.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccc--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLSVN-- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~-- 458 (617)
+.+-..+.+.+...+..|+..+........ ... .....|.+..+++.. .+.|..+...|+..|..|+..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~------~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEI------VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--ccc------ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 344444456666778888887776543322 100 111223333444433 344777888888888888872
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
...+... .+..+.+++-++.....+++.+..++-...... .....++.+...+. ..+++++..+...+.
T Consensus 328 ~~~~~~~--~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk---~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 328 PLFRKYA--KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALK---GKNPQIKGECLLLLD 396 (815)
T ss_pred hhhHHHH--HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhc---CCChhhHHHHHHHHH
Confidence 2222222 345688888888888877777776665554311 01123455566664 477788887666666
Q ss_pred HhccCCC--chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 539 NLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 539 ~l~~~~~--~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
-....-+ .-..-.-.+.++.++....+.+ .+|+.+|..++..+..
T Consensus 397 r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHhhcCCcCcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHH
Confidence 5543222 1111111235566666665554 7999999888887754
No 346
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.88 E-value=3e+02 Score=28.63 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=79.2
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh--hCCHHHHHHHHhcCCHHHHHHHHH-HHHHhcc
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMK--DGGIRLLLDLAKSWREGLQSEAAK-AIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~-~L~~ls~ 457 (617)
..+++.|.. .++..+.-|++.|..+...+... +.+ .-++..+++.-.+..+++...|.. ++.-++.
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~----------l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR----------LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHh----------hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 445555543 67788899999999887665432 222 234556666666666666555554 5666666
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
+.+.+. |..+..++...+......+...+..+...= .++.+.. ....|.+++.- .+.+..++..|+.
T Consensus 402 ~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay---~S~SS~VRKtaVf 470 (516)
T KOG2956|consen 402 HLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAY---DSTSSTVRKTAVF 470 (516)
T ss_pred hCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHh---cCchHHhhhhHHH
Confidence 554332 223444444444444444444444444321 1122211 34666677766 4567789999999
Q ss_pred HHHHhc
Q 007131 536 ALANLA 541 (617)
Q Consensus 536 ~L~~l~ 541 (617)
||-.+.
T Consensus 471 CLVamv 476 (516)
T KOG2956|consen 471 CLVAMV 476 (516)
T ss_pred hHHHHH
Confidence 988764
No 347
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=51.65 E-value=1.9e+02 Score=27.83 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=78.1
Q ss_pred hHHHHHhhCCHH-HHHHHHhcC--CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 420 RAEAVMKDGGIR-LLLDLAKSW--REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 420 ~~~~i~~~~~i~-~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
.+..+.+.+.++ -|+.+|.+. ++++-..++.+|.+|...-+.. .+..+ .+.............+
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~-----~~~~~--------~~~~~~~~~~~l~~~l 98 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL-----VESQP--------KDKNQRRNIPELLKYL 98 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh-----ccCCC--------CChHHHHHHHHHHHHH
Confidence 345666777665 677777654 4667777777777777644432 00000 0111111111111111
Q ss_pred cCCcchHHHHHhcCChHHHHHHHhh-----c---CCCCHHHHHHHHHHHHHhccCCCc-------------h----HHHH
Q 007131 497 SVGEEHKGAIADAGGVKALVDLIFK-----W---SSGGDGVLERAAGALANLAADDKC-------------S----MEVA 551 (617)
Q Consensus 497 ~~~~~~~~~i~~~g~i~~L~~ll~~-----~---~~~~~~~~~~a~~~L~~l~~~~~~-------------~----~~i~ 551 (617)
-.+|..|.+.+++..++.++.. . ...+..+.+.++..++|+..-++. + ..+.
T Consensus 99 ---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 99 ---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred ---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 1245566666666666665532 0 112446788888899998753221 1 2334
Q ss_pred HhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 552 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.|....|+.+..+.....-....+.++..|-.
T Consensus 176 ~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k 208 (266)
T PF04821_consen 176 ESGVLDLLLTLASSPQESDFNLLLLEIIYLLFK 208 (266)
T ss_pred HcCHHHHHHHHHhCccccchhhHHHHHHHHHHc
Confidence 567777777777765323333356666666554
No 348
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=97 Score=33.97 Aligned_cols=85 Identities=15% Similarity=-0.010 Sum_probs=60.1
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE 501 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 501 (617)
..+.+.=.++.++..+++..--++..||..+..++. +-++.-.-..+.+...+++++.+-.++..|+.||.-+-.+.+
T Consensus 454 an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 454 ANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred HHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh
Confidence 345566566777778888888899999999998844 333333334456677888888777888889989988877765
Q ss_pred hHHHHHh
Q 007131 502 HKGAIAD 508 (617)
Q Consensus 502 ~~~~i~~ 508 (617)
...++.+
T Consensus 532 ~h~k~sa 538 (970)
T COG5656 532 SHEKFSA 538 (970)
T ss_pred hhHHHHh
Confidence 5444443
No 349
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=50.18 E-value=2.9e+02 Score=28.10 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=99.6
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh----c-------CCHHHHHHHHHHHHHhccc
Q 007131 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK----S-------WREGLQSEAAKAIANLSVN 458 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~----~-------~~~~~~~~a~~~L~~ls~~ 458 (617)
..+.+.+..|...|.+.-...+... . ...-..-++.+++.++ + .+.++...|..++..+..+
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~----~---~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~ 76 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLP----D---RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH 76 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCC----c---HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc
Confidence 3444556667766666544333321 1 1112233344444443 1 1456788999999999988
Q ss_pred hhhHHHHHHhCC---HHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhc--CCCCHHHHH
Q 007131 459 AKVAKAVAEEGG---INILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW--SSGGDGVLE 531 (617)
Q Consensus 459 ~~~~~~i~~~~~---i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~ 531 (617)
++....+-..-+ +...+..+.. .+..+...+.++|..=...+. ++....+..++..+..- +-.+..+..
T Consensus 77 ~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~ 152 (372)
T PF12231_consen 77 PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPSKSIIS 152 (372)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCchhHHH
Confidence 886666644333 4555555544 233455555555554333322 44445556666665441 245667888
Q ss_pred HHHHHHHHhccCCCchHHHHHh--CCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 532 RAAGALANLAADDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~--~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
+++.++.+|...-+. .|.+. -.++.++..+-+.. ..++..|..++..+.
T Consensus 153 erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~-k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 153 ERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSA-KDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHH
Confidence 999999998753333 33332 25677776554443 466666666555554
No 350
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=49.84 E-value=56 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHh
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE 468 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 468 (617)
+++.|+..|.++++++...|..+|...+.+++.-+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5789999999999999999999999999877666655543
No 351
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=49.36 E-value=83 Score=31.90 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=61.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHH-HHHHHHHHhccCCCCCC
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQ-AARALANLAAHGDSNSN 591 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~-a~~~L~~l~~~~~~~~~ 591 (617)
..+++-+. ++....+++.++--|+.-+.+++.+..+..+|.++.+++.+....++.+... ++.++.-++.+..
T Consensus 24 ~ylld~l~--~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~---- 97 (361)
T PF07814_consen 24 EYLLDGLE--SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL---- 97 (361)
T ss_pred HHHHhhcc--cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc----
Confidence 33444443 4456678888888888888899999999999999999998855433434444 4445555554332
Q ss_pred ccccccccCcHHHHHHHhc
Q 007131 592 NSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 592 ~~~~~~~~g~~~~L~~ll~ 610 (617)
....+.+.+..+.+..++.
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred chhhhhchhHHHHHHHHhc
Confidence 2334445666666677777
No 352
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=49.27 E-value=2.4e+02 Score=31.92 Aligned_cols=153 Identities=9% Similarity=0.019 Sum_probs=91.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
..+...+.+++.......+.++.+++....-.. + . .....+.-..-....-..+......+|..++. +++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~----~---~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPP----K---K--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCC----c---c--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 788888888888888888888888764432221 0 0 11122222222222234566777888888888 444
Q ss_pred -hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH----HHHhc---CChHHHHHHHhh-----cCCCCH
Q 007131 461 -VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG----AIADA---GGVKALVDLIFK-----WSSGGD 527 (617)
Q Consensus 461 -~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~----~i~~~---g~i~~L~~ll~~-----~~~~~~ 527 (617)
....+.+.+....++.++-++++++..+|...|....... .|. .+.+. ..+..+...+.. ...+-+
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~-~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~p 593 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD-GRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCP 593 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchH
Confidence 3455556777899999999999999999999999887533 322 22221 112222222211 123345
Q ss_pred HHHHHHHHHHHHhccCC
Q 007131 528 GVLERAAGALANLAADD 544 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~ 544 (617)
.+.+...-++..||...
T Consensus 594 r~vr~~~DIi~~Lcdp~ 610 (727)
T PF12726_consen 594 RMVRCLMDIIEVLCDPV 610 (727)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56666667777777543
No 353
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=48.71 E-value=2e+02 Score=25.83 Aligned_cols=147 Identities=15% Similarity=0.052 Sum_probs=86.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
.++.++++..+.+..++..|+.++.-+.. ..++. ...+|.++.+..++++.++..|...+..+....+.-..-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45778888888899999999999875433 11111 1148999999999999999999999999976543211111
Q ss_pred hcCChHHHHHHHhh-cCCCCHHH---HHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcC-------CchhHHHHH
Q 007131 508 DAGGVKALVDLIFK-WSSGGDGV---LERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSC-------KFEGVQEQA 575 (617)
Q Consensus 508 ~~g~i~~L~~ll~~-~~~~~~~~---~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~-------~~~~~~~~a 575 (617)
-..|+..-.+.-.. ..+..... .....+-+..+.. +...|..++ ..|++.+... ....-....
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccchhHHHHH
Confidence 12244443333322 01111111 5555666666665 334455554 4555555432 123445556
Q ss_pred HHHHHHHhcc
Q 007131 576 ARALANLAAH 585 (617)
Q Consensus 576 ~~~L~~l~~~ 585 (617)
..+..||+.-
T Consensus 159 ~Fla~nLA~l 168 (187)
T PF12830_consen 159 LFLAENLATL 168 (187)
T ss_pred HHHHHHHhcC
Confidence 7777777753
No 354
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=4.3e+02 Score=29.40 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.+..+|.+.+..+..+|+..|..|. ..+.. + ..+...+++++.+. +-.++.....-|..+.. .
T Consensus 246 ~~i~~lL~stssaV~fEaa~tlv~lS-~~p~a----------l--k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~ 310 (948)
T KOG1058|consen 246 RCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTA----------L--KAAASTYIDLLVKESDNNVKLIVLDRLSELKA--L 310 (948)
T ss_pred HHHHHHHhcCCchhhhhhcceEEEcc-CCHHH----------H--HHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--h
Confidence 55555666666666666666666652 11111 0 01223444444332 33333333333333321 1
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
++..+ .|-+--++++|.+++-++++.+......|+...
T Consensus 311 ~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 311 HEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred hHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 11111 112334556677777788888888777776554
No 355
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=47.27 E-value=1.1e+02 Score=30.92 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
|..+++=|.. .+..++..++--|+.-+.+++-+..+.+.|.+..+++.+.+ ...++.....++.++.-++.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~-~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSD-APDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhcc-ccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4445555553 44577888888888888999999999999999999999954 222223334444555555555444333
Q ss_pred HHHhCCHHHHHHHHh
Q 007131 550 VALAGGVHALVMLAR 564 (617)
Q Consensus 550 i~~~~~~~~L~~ll~ 564 (617)
+.+.+....+++++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 334444444455544
No 356
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.59 E-value=3.5e+02 Score=29.72 Aligned_cols=107 Identities=12% Similarity=-0.006 Sum_probs=66.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHH--HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAV--MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i--~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
..++++|.+++-..+-..+.+..|+....... +...... .-...+..+++-|.+.+|-.|..|..++..+..-
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d----~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKD----GQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcc----hhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc
Confidence 67788999988777777777888876432222 1111100 1123445566666777899999999988877652
Q ss_pred ---hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 459 ---AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 459 ---~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
...|..+ +...++.|++.+.-|+..|...+..|-
T Consensus 378 sk~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 378 SKTVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ccccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2223333 334556676677777777777776654
No 357
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=45.19 E-value=2.7e+02 Score=26.82 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=66.3
Q ss_pred HHHhcCChHH-HHHHHhhcCCCCHHHHHHHHHHHHHhccC------CC-------------------chHHHHHhCCHHH
Q 007131 505 AIADAGGVKA-LVDLIFKWSSGGDGVLERAAGALANLAAD------DK-------------------CSMEVALAGGVHA 558 (617)
Q Consensus 505 ~i~~~g~i~~-L~~ll~~~~~~~~~~~~~a~~~L~~l~~~------~~-------------------~~~~i~~~~~~~~ 558 (617)
.+.+.+.++. |+.+|.. ..+++++...++..|.+|+.. .. .|.+|.+.+.+..
T Consensus 35 ~lg~~~iv~~DLiPiL~~-~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~ 113 (266)
T PF04821_consen 35 QLGEWNIVQKDLIPILIS-YKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKA 113 (266)
T ss_pred HHHHhchhhhhHHHHHHh-ccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3334455543 6666654 445789999999999999861 11 0445555566676
Q ss_pred HHHHHhc----------CCchhHHHHHHHHHHHHhccCCCCCCcc-------------ccccccCcHHHHHHHhcCC
Q 007131 559 LVMLARS----------CKFEGVQEQAARALANLAAHGDSNSNNS-------------AVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 559 L~~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------------~~~~~~g~~~~L~~ll~~~ 612 (617)
++..+.. ..+..+.+.+...++|+..-++...... ..+.+.|+...|+.+.++.
T Consensus 114 ~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 114 LIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred HHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 6665521 1124677889999999887654432221 2334567777777777765
No 358
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=44.46 E-value=2.2e+02 Score=29.02 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHh--c--------CCHHHHHHHHHHHHHhcC
Q 007131 430 IRLLLDLAKSWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR--S--------MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 430 i~~Lv~lL~~~~-~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~--~--------~~~~~~~~a~~~L~nL~~ 498 (617)
-..+++.|..+. ...+......++.|+.+...-+.+....-++.|+.+.+ + .+..+...|..+|.|+.+
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 367788887775 55677788899999887665443333223444444432 1 344788899999999997
Q ss_pred Cc-chHHHHHhcCChHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc-CCCchHHH-HHhCCHHHHHHHHhcC-------
Q 007131 499 GE-EHKGAIADAGGVKALVDLIFKW--SSGGDGVLERAAGALANLAA-DDKCSMEV-ALAGGVHALVMLARSC------- 566 (617)
Q Consensus 499 ~~-~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~a~~~L~~l~~-~~~~~~~i-~~~~~~~~L~~ll~~~------- 566 (617)
.+ ..|....+......+.+.+... ..--..+...=+..|.-|+. ....|.++ .+.+|++.+.+.+.+.
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 76 5666666766666666655320 01111233344444444442 22445555 5778889988888642
Q ss_pred --Cc-----hhHHHHHHHHHHHHhccCCCC
Q 007131 567 --KF-----EGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 567 --~~-----~~~~~~a~~~L~~l~~~~~~~ 589 (617)
+. ...--.|..++.|++.+++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~ 236 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCDSDKD 236 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeeccccc
Confidence 11 122233556667888766653
No 359
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.94 E-value=2.2e+02 Score=24.95 Aligned_cols=110 Identities=19% Similarity=0.094 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc--
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-- 546 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-- 546 (617)
+..+..+|.+.+++.+..++..+.-++.... .+.+.+ ..-+..++.+|++ .+...+.+.++.++..+...-.+
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567788888888888888877776665422 244434 2356778888874 45567888888888888643333
Q ss_pred --hHHHHHhCCHHHHHH-HHhcCCchhHHHHHHHHHHHHhc
Q 007131 547 --SMEVALAGGVHALVM-LARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 547 --~~~i~~~~~~~~L~~-ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
..++.... ++.++. ++.-..+......+..+|..+-.
T Consensus 104 ~l~Rei~tp~-l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPN-LPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhcc-HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33443322 333333 22211114666777777777654
No 360
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.79 E-value=13 Score=34.80 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCCCCCHHHHHHHHccCC-hHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~-~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
...+.+||.|++..|+..++ -+|+..++++-.....+..+..+|+.+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35689999999999999997 789999999887777776666677544
No 361
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.47 E-value=2.7e+02 Score=27.04 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=51.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH--HHHhcCChHHHHHHHhhc---------CCCCHHHHHHHHHHHH
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG--AIADAGGVKALVDLIFKW---------SSGGDGVLERAAGALA 538 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~--~i~~~g~i~~L~~ll~~~---------~~~~~~~~~~a~~~L~ 538 (617)
.+|.++.++.+.+++.+..++.+|..+...-.... .+.+.|..+.+-+.+... ..++..+...|..|+.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 48999999999999999999999999986443222 355566665555554430 1345667888888888
Q ss_pred Hhcc
Q 007131 539 NLAA 542 (617)
Q Consensus 539 ~l~~ 542 (617)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 8853
No 362
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.29 E-value=69 Score=27.27 Aligned_cols=69 Identities=22% Similarity=0.133 Sum_probs=52.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcC-CHH---HHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSM-NRL---VAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~-~~~---~~~~a~~~L~nL~ 497 (617)
++..|.+-|.+.++.++..|+.+|-.+..+ +..+..+.....+..|..++... ... |++.+...+..-+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 456677778888999999999999999884 55677777766788888988763 333 7888887776654
No 363
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.86 E-value=3e+02 Score=25.82 Aligned_cols=99 Identities=18% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH--h------cC--CHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--K------SW--REGLQSEAAKA 451 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL--~------~~--~~~~~~~a~~~ 451 (617)
..+..+...+..+.+.-+.+.+..+...++.. + +.+..++..+ + ++ ..+.....+..
T Consensus 41 ~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~----------f---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s 107 (234)
T PF12530_consen 41 QTLVSLVEQGSLELRYVALRLLTLLWKANDRH----------F---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAAS 107 (234)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHhCchH----------H---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 56666666666666556666677665443321 1 3344444431 1 11 23334444556
Q ss_pred HHHhccchhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhc
Q 007131 452 IANLSVNAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 452 L~~ls~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~ 497 (617)
++.++...++ ....-++.+..+| +..++.++..+..+|..|+
T Consensus 108 ~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 108 IRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 6666664443 1122267888888 6778888889999999998
No 364
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=41.24 E-value=2.4e+02 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCC
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVIND 411 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~ 411 (617)
+.|..+++. .+..++.+++++|..|..-+.
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 677777765 458888998888888765443
No 365
>PLN03205 ATR interacting protein; Provisional
Probab=41.04 E-value=89 Score=31.36 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----cCCcchHHHHHhcCChHHHHHHHhh--cCCCCHHHHHHHHHHHHHhccCC
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNL----SVGEEHKGAIADAGGVKALVDLIFK--WSSGGDGVLERAAGALANLAADD 544 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL----~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~a~~~L~~l~~~~ 544 (617)
+++|+++..-++..++..++.+|..+ +.+..--..--+.+- ..|.+++.. .....+.++..|+.++.-+.+..
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NW-vsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANW-HSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccH-HHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 35566666667776666666655443 333211111111222 223344322 12345678888888887777654
Q ss_pred Cc---hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 545 KC---SMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 545 ~~---~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+. |+.+.+...++.+..+|+......|+..|.-.|.-|
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 43 788888788888999998765578888888776644
No 366
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.74 E-value=80 Score=34.80 Aligned_cols=136 Identities=18% Similarity=0.003 Sum_probs=76.1
Q ss_pred CHHHHHHHHhc----CCHHHHHHHHHHHHHhccc---hh-------hHHHHHHhCCHHHHHHHHh----cCCHHHHHHHH
Q 007131 429 GIRLLLDLAKS----WREGLQSEAAKAIANLSVN---AK-------VAKAVAEEGGINILAVLAR----SMNRLVAEEAA 490 (617)
Q Consensus 429 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~ls~~---~~-------~~~~i~~~~~i~~L~~lL~----~~~~~~~~~a~ 490 (617)
.+..+.+++++ .++.++..|+-.++.+... .. .+........++.+...|. ..+.+-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34556666653 3566777787777777651 10 1111112223566666665 24557778889
Q ss_pred HHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc-CCch
Q 007131 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS-CKFE 569 (617)
Q Consensus 491 ~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~-~~~~ 569 (617)
.||+|+... ..++.|...+.........++..|+.+|..++...+. .+.+.+..++.+ ..+.
T Consensus 512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-H
T ss_pred HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCCh
Confidence 999999542 3666777766541134567888899998877543221 122456666554 3346
Q ss_pred hHHHHHHHHHHH
Q 007131 570 GVQEQAARALAN 581 (617)
Q Consensus 570 ~~~~~a~~~L~~ 581 (617)
++|-+|..+|..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 788887766665
No 367
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=40.57 E-value=2.5e+02 Score=28.64 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCcch-HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------------hHH
Q 007131 484 LVAEEAAGGLWNLSVGEEH-KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------------SME 549 (617)
Q Consensus 484 ~~~~~a~~~L~nL~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------------~~~ 549 (617)
..+.+|+..|..|+...+. ...++ .+.+..++.-....++.+..-+..|+..+..++..... -..
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4567888999999854211 11111 12333333222223566778889999999999865432 122
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+...-.+|.|. -..+..+-++..|+..+......- .++.+ .++++.++..|++++.
T Consensus 305 Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l-----~~~~l--~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 305 FFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL-----PKEQL--LQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS------HHHH--HHHHHHHHHHTTSS-H
T ss_pred HHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC-----CHHHH--HHHHHHHHHHhCCCCc
Confidence 22222223222 111223567777877777765321 12332 3689999999988753
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=40.40 E-value=12 Score=20.06 Aligned_cols=9 Identities=22% Similarity=0.010 Sum_probs=4.5
Q ss_pred CCEEEccCC
Q 007131 280 LKVLCALNC 288 (617)
Q Consensus 280 L~~L~l~~c 288 (617)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 445555555
No 369
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.17 E-value=47 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
||+.|++-|.+.+++|...|..+|...+.+++.-..++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 588999999999999999999999999988765555554
No 370
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=38.51 E-value=4.3e+02 Score=28.84 Aligned_cols=167 Identities=10% Similarity=0.038 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHH----hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE----EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.+..+..-..+++.-|..+|+-+..+...-..+.. ...+..++..+. .++.-+.-++.+|.|+-.++.++..+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34444455678888888888888876665444433 112344444443 4566677889999999888877777665
Q ss_pred cCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHh----cCCchhHHHHHHHHHHH
Q 007131 509 AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLAR----SCKFEGVQEQAARALAN 581 (617)
Q Consensus 509 ~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~----~~~~~~~~~~a~~~L~~ 581 (617)
. ...+...+.. ....+..++.+.+....|.+. ..++- +.++.+.+...+. ..++-+.......||.+
T Consensus 628 ~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 628 R--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred H--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 3 3333333222 122344566555555555552 11111 1344455544443 22223456667888889
Q ss_pred HhccCCCCCCccccccccCcHHHHHHHhc
Q 007131 582 LAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
|+..+.. ...+...-.++.+..-++
T Consensus 702 L~t~~~~----~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 702 LMTVDAS----VIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred hccccHH----HHHHHHhcCHHHHHHHHH
Confidence 9874433 233333334555555443
No 371
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.72 E-value=5.9e+02 Score=27.99 Aligned_cols=168 Identities=15% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHhhhcccCCCccc--CCchhHHHHHhhCCHHHHHHHHh----cCCHHHHHHHHHH
Q 007131 382 GLLLSLMQS----TQEDVQERAATGLATFVVINDENAS--IDCGRAEAVMKDGGIRLLLDLAK----SWREGLQSEAAKA 451 (617)
Q Consensus 382 ~~l~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~~i~~~~~i~~Lv~lL~----~~~~~~~~~a~~~ 451 (617)
..+.+++++ .++.++..|+.++..|+...-.... ..............++.+...+. ..+.+.+..++.+
T Consensus 434 ~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 513 (618)
T PF01347_consen 434 KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKA 513 (618)
T ss_dssp HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 445555543 4566777777777777543111100 00000011122334555555554 3456778888889
Q ss_pred HHHhccchhhHHHHHHhCCHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHH
Q 007131 452 IANLSVNAKVAKAVAEEGGINILAVLARSM---NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (617)
Q Consensus 452 L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 528 (617)
|+|+... ..++.|...+... +..++..|+.||..++..... .+.+.+..+..+ ...+.+
T Consensus 514 LgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n-~~e~~E 575 (618)
T PF01347_consen 514 LGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMN-TTEDPE 575 (618)
T ss_dssp HHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH--TTS-HH
T ss_pred hhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcC-CCCChh
Confidence 9887432 2355566665554 567888999999988643211 134556777776 667778
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
++.+|..+|... .+. ...+..+...+...++..|...+-
T Consensus 576 vRiaA~~~lm~~---~P~------~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 576 VRIAAYLILMRC---NPS------PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHhc---CCC------HHHHHHHHHHHhhCchHHHHHHHH
Confidence 888887666542 111 123444556665543344444433
No 372
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.30 E-value=49 Score=26.56 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
...+...+..||..|+.=..+++.|+++.|+.+|.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~ 97 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC
Confidence 44567788899999998899999999999999994
No 373
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=37.07 E-value=5.7 Score=41.61 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|+.|-++.+ +++.- -..+. ..+.|..|+.+.|...+- .-+.++.+|+.|++..+.... ...++. +-.|..||
T Consensus 145 Lkvli~sNN-kl~~l-p~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~--~LpLi~lD 217 (722)
T KOG0532|consen 145 LKVLIVSNN-KLTSL-PEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC--SLPLIRLD 217 (722)
T ss_pred ceeEEEecC-ccccC-Ccccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh--CCceeeee
Confidence 777777765 33210 01122 446777888888754443 446777888888887753221 112332 55699999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++.|.++.- +.-+..+..|++|-|.+||.-...+
T Consensus 218 fScNkis~i--Pv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 218 FSCNKISYL--PVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred cccCceeec--chhhhhhhhheeeeeccCCCCCChH
Confidence 999987543 3345678999999999998655554
No 374
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.04 E-value=2.6e+02 Score=23.79 Aligned_cols=70 Identities=17% Similarity=0.008 Sum_probs=53.4
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHH-HHHHHhcC---CHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRL-LLDLAKSW---REGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~-Lv~lL~~~---~~~~~~~a~~~L~~ls 456 (617)
..+.+-|. +.++.++..|+..|-.++.++... .+..++..+++.. |++++... ...++..++.++...+
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 56666665 468899999999999988887653 2367888899987 99999642 3578888888888766
Q ss_pred c
Q 007131 457 V 457 (617)
Q Consensus 457 ~ 457 (617)
.
T Consensus 115 ~ 115 (141)
T cd03565 115 D 115 (141)
T ss_pred H
Confidence 4
No 375
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.77 E-value=1.1e+02 Score=32.02 Aligned_cols=86 Identities=16% Similarity=0.019 Sum_probs=64.2
Q ss_pred HHHHHHhhccCCccchHHHHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH
Q 007131 358 SHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA 437 (617)
Q Consensus 358 s~~~~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL 437 (617)
..-..+++.....+-+.++ ..+.+-+.+.+..++..|+.+|-.+..++.... +..|++.+++..+|+..
T Consensus 22 NleIcD~IN~~~~~~~eAv-----ralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f------h~~Va~k~fL~emVk~~ 90 (470)
T KOG1087|consen 22 NLEICDLINSTEGGPKEAV-----RALKKRLNSKNSKVQLLALTLLETCVKNCGYSF------HLQVASKEFLNEMVKRP 90 (470)
T ss_pred HHHHHHHHhcCccCcHHHH-----HHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHhcc
Confidence 3444556665555544433 677888888778999999999988888887653 36889999999999988
Q ss_pred hcC--CHHHHHHHHHHHHH
Q 007131 438 KSW--REGLQSEAAKAIAN 454 (617)
Q Consensus 438 ~~~--~~~~~~~a~~~L~~ 454 (617)
+.. +..+|..+..+|-.
T Consensus 91 k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 91 KNKPRDLKVREKILELIDT 109 (470)
T ss_pred ccCCcchhHHHHHHHHHHH
Confidence 765 67788888887753
No 376
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.34 E-value=2e+02 Score=31.35 Aligned_cols=104 Identities=21% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHHhhc-CCCCHHHHHHHHHHHHHhc
Q 007131 471 INILAVLARS----MNRLVAEEAAGGLWNLSV----GEEHKGAIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLA 541 (617)
Q Consensus 471 i~~L~~lL~~----~~~~~~~~a~~~L~nL~~----~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~a~~~L~~l~ 541 (617)
++.+..++++ ..+.+...|..+++++.. ..+.+...+....++.+...|... ...+..-+..++.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 4556677765 344566666666666653 222211122223566666666431 1234444566777777764
Q ss_pred cCCCchHHHHHhCCHHHHHHHHh--cCCchhHHHHHHHHHHHHhc
Q 007131 542 ADDKCSMEVALAGGVHALVMLAR--SCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~--~~~~~~~~~~a~~~L~~l~~ 584 (617)
. ...++.+..++. ...+..++..|+++|..++.
T Consensus 475 ~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 475 H----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred C----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 2 122344444443 12236789999999998874
No 377
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=34.96 E-value=2.3e+02 Score=22.44 Aligned_cols=64 Identities=17% Similarity=0.042 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
+..|++-...++....+.+...|..++..+.....+.+.|+++.|-++-. ...+..+...-+++
T Consensus 32 l~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~---~~~~~~~~~id~il 95 (98)
T PF14726_consen 32 LKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP---NVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34444444456666788899999999999999999999999998766663 34555555554444
No 378
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=34.51 E-value=1.8e+02 Score=29.03 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHhC--CHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCcchHHHH
Q 007131 444 LQSEAAKAIANLSVNAKVAKAVAEEG--GINILAVLARSM---NRLVAEEAAGGLWNLSVGEEHKGAI 506 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~~~~~~~i~~~~--~i~~L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~i 506 (617)
+|-.|..++..+.........+...+ .+..|++++..+ ...++..|..+|..++....-...+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 55666677766666777777887766 689999999764 3578999999999999866433333
No 379
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=33.85 E-value=5.4e+02 Score=26.38 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=89.1
Q ss_pred HHHHHhhccCC-HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh----------cCCHHHHHHHHH
Q 007131 382 GLLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK----------SWREGLQSEAAK 450 (617)
Q Consensus 382 ~~l~~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~----------~~~~~~~~~a~~ 450 (617)
..++..+..+- ...+..++..++-|++..+.-. .+.....+..|+.+.+ .++..+...|..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~--------~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslK 119 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLE--------PLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLK 119 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccc--------cccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHH
Confidence 45555554433 3445666777777654433221 1222223344444432 123578899999
Q ss_pred HHHHhccchh-hHHHHHHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhcC-CcchHHHHH-hcCChHHHHHHHhhc
Q 007131 451 AIANLSVNAK-VAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSV-GEEHKGAIA-DAGGVKALVDLIFKW 522 (617)
Q Consensus 451 ~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~-~~~~~~~i~-~~g~i~~L~~ll~~~ 522 (617)
+|+|+..+.. .+....+..-...+++.+... .-++...=...|.-|+. ..+.|..++ +.+|++.+.+.+.+.
T Consensus 120 CLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 120 CLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred HHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 9999999654 566666666666666654331 11334444555555543 335665554 589999999998761
Q ss_pred C---C---------CCHHHHHHHHHHHHHhccCCC
Q 007131 523 S---S---------GGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 523 ~---~---------~~~~~~~~a~~~L~~l~~~~~ 545 (617)
- + +.......++.++.|++.+..
T Consensus 200 lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 200 LGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 1 1 112345678888899886543
No 380
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.42 E-value=2.9e+02 Score=23.17 Aligned_cols=125 Identities=15% Similarity=0.070 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc----------hhh---
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN----------AKV--- 461 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~----------~~~--- 461 (617)
++.+.+.++..++..+-.. .=.+.++.++.++.. ++........+|..+... .+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~-----------~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~ 71 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQ-----------QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRE 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTT-----------TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChh-----------hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHH
Confidence 4555666666665332111 012355667777665 455666666666666541 111
Q ss_pred -HHHHHHh--CCHHHHHHHHhcCC----HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 462 -AKAVAEE--GGINILAVLARSMN----RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 462 -~~~i~~~--~~i~~L~~lL~~~~----~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
+..+.+. ..++.+.+++.... +++...+..++......- .-..+.+.+.++.+.++|. ++.++..|+
T Consensus 72 l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~-----~~~~~~~A~ 145 (148)
T PF08389_consen 72 LKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQ-----SPELREAAA 145 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT-----SCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcC-----CHHHHHHHH
Confidence 2222222 12344445554432 778888999998877633 3445555678888888883 334577777
Q ss_pred HHH
Q 007131 535 GAL 537 (617)
Q Consensus 535 ~~L 537 (617)
.||
T Consensus 146 ~cl 148 (148)
T PF08389_consen 146 ECL 148 (148)
T ss_dssp HHH
T ss_pred HhC
Confidence 765
No 381
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=33.10 E-value=25 Score=37.11 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=46.6
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
..++|..|+.+.|... .+..-..++..|+.|.+. .+++.+ ....++ +-.|.+|+++.+ +++. +..-+.
T Consensus 164 ~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vr---Rn~l~~-lp~El~--~LpLi~lDfScN-kis~--iPv~fr 231 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVR---RNHLED-LPEELC--SLPLIRLDFSCN-KISY--LPVDFR 231 (722)
T ss_pred cchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHh---hhhhhh-CCHHHh--CCceeeeecccC-ceee--cchhhh
Confidence 3455666666655411 122222234455555553 112211 122233 234677777744 4433 222234
Q ss_pred cCCCCceEeecCCCCCCH-HH--Hh-cCcCCCeecccCC
Q 007131 203 LCPNLTDIGFLDCLNVDE-VA--LG-NVLSVRFLSVAGT 237 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~-~~--l~-~~~~L~~L~l~~~ 237 (617)
.+..|++|-|..|+.-+. .. ++ ...=-|+|++..|
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 556777777777654433 11 22 2233355555554
No 382
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.66 E-value=2.7e+02 Score=23.74 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=51.7
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhcc--chhhHHHHHHhCCHHH-HHHHHhc---CCHHHHHHHHHHHHHhcC
Q 007131 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINI-LAVLARS---MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 429 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~-L~~lL~~---~~~~~~~~a~~~L~nL~~ 498 (617)
++..|.+-|.. .++.++..|..+|-.+.. .......|...+.+.. |++++.. .+..|+..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 44556666654 478888889999988888 4566777877878887 8999863 345788888888877763
No 383
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=2.6e+02 Score=27.30 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhC
Q 007131 476 VLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG 554 (617)
Q Consensus 476 ~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 554 (617)
..|.+.+-+....++-.+..|+..+ +....+.. ..+..+++-+.. ....+-+.|+.+++-+...-.+. +.+
T Consensus 95 ~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKN---lRS~VsraA~~t~~difs~ln~~--i~~-- 166 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKN---LRSAVSRAACMTLADIFSSLNNS--IDQ-- 166 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHH--HHH--
Confidence 3444444444444444444444322 21111111 233344444432 34466677777776665432221 111
Q ss_pred CHHHHHH-HHhcC--CchhHHHHHHHHHHHHhc
Q 007131 555 GVHALVM-LARSC--KFEGVQEQAARALANLAA 584 (617)
Q Consensus 555 ~~~~L~~-ll~~~--~~~~~~~~a~~~L~~l~~ 584 (617)
....++. ++..+ +..=+++.|-.+|..+..
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 2233333 33322 123567777777777764
No 384
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=31.98 E-value=43 Score=19.03 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 485 VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 485 ~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
++..|+.+|.++.. ..+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46778888888765 235667766663
No 385
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=30.92 E-value=9.5 Score=31.67 Aligned_cols=100 Identities=17% Similarity=0.342 Sum_probs=47.0
Q ss_pred cCCCCCeeeccC-ccCCcHHHHHHHHhcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCCC-CCCHHHHHHHHhcCC
Q 007131 177 CCPKLKKLRLSG-IRDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTS-NMKWGVVSQVWHKLP 253 (617)
Q Consensus 177 ~~~~L~~L~l~~-~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~-~i~~~~l~~l~~~~~ 253 (617)
.|.+|+.+.+.. ...+... ....|++|+.+.+.+. ..+.+..+..+++|+++.+.... .+. ......|+
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~----~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~~~~i~----~~~F~~~~ 81 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGEN----AFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNNLKSIG----DNAFSNCT 81 (129)
T ss_dssp T-TT--EEEETST--EE-TT----TTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETSTT-EE-----TTTTTT-T
T ss_pred CCCCCCEEEECCCeeEeChh----hcccccccccccccccccccceeeeecccccccccccccccccc----cccccccc
Confidence 467888888873 2223222 2346678888888763 23445567778788888885421 111 12335678
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALN 287 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 287 (617)
+|+.+++..+ +..-. ...+.++ +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~-~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIG-SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEH-TTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEc-hhhhcCC-CceEEEECC
Confidence 8888888664 21111 1223455 777777664
No 386
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.91 E-value=7.9e+02 Score=27.43 Aligned_cols=133 Identities=16% Similarity=0.014 Sum_probs=78.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
-|..|+.+|.+.+..+.+.+-.++..+...+... .+ +..|++. ++..+.. |+.+|..+ ..+..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~l-----~~~l~~y~~~t~s~~----~~~il~~~-~~P~~----- 68 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-WL-----VNGLVDYYLSTNSQR----ALEILVGV-QEPHD----- 68 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-HH-----HHHHHHHHhhcCcHH----HHHHHHhc-CCccH-----
Confidence 4567788888887777766666554433221111 11 2334443 3333332 33333332 11111
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..++..|.+ .-..+.-+..++..|..+... +..-..|.+...++.|+++|..+.+..+...|+.+|..|-
T Consensus 69 -----K~~~~~l~~-~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 -----KHLFDKLND-YFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred -----HHHHHHHHH-HHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 122333322 113446788899999998864 5667888999999999999987766777778887777764
No 387
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.47 E-value=4e+02 Score=23.91 Aligned_cols=144 Identities=17% Similarity=0.087 Sum_probs=84.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++++.-+.+..++..|+..+.-.....--+. ...+|.|+.+..++++.++..|...+..+...-+.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNP------------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 667777778889999999998887654443332 23679999999999999999999999998763332
Q ss_pred HHHHHHhCCHHHHHHHHhc--CCHH--H---HHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcC-----CCCHH
Q 007131 462 AKAVAEEGGINILAVLARS--MNRL--V---AEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWS-----SGGDG 528 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~--~~~~--~---~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~ 528 (617)
--.-.-..|+..-.+.-+. .+.. . .......|..+.. +...|..++ ..|++.+.... .....
T Consensus 79 ~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~~ 153 (187)
T PF12830_consen 79 LVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSPS 153 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccchh
Confidence 1111112345444444332 1111 1 3445566666655 335666664 45566554310 01223
Q ss_pred HHHHHHHHHHHhcc
Q 007131 529 VLERAAGALANLAA 542 (617)
Q Consensus 529 ~~~~a~~~L~~l~~ 542 (617)
-......+..|||.
T Consensus 154 ~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 154 DLDFLLFLAENLAT 167 (187)
T ss_pred HHHHHHHHHHHHhc
Confidence 34445555556554
No 388
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=29.70 E-value=1.6e+02 Score=20.69 Aligned_cols=49 Identities=24% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 537 L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
|..||....+|..+.+.|+.+.+=.+=....++++++..-.+..-|-.+
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLird 50 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRD 50 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 5667888888999998888666555444444467777766666666543
No 389
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=29.36 E-value=45 Score=18.49 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=4.3
Q ss_pred CCCEEEccCC
Q 007131 279 SLKVLCALNC 288 (617)
Q Consensus 279 ~L~~L~l~~c 288 (617)
+|+.|++++|
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444444
No 390
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=29.36 E-value=45 Score=18.49 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=4.3
Q ss_pred CCCEEEccCC
Q 007131 279 SLKVLCALNC 288 (617)
Q Consensus 279 ~L~~L~l~~c 288 (617)
+|+.|++++|
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444444
No 391
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=28.40 E-value=2.3e+02 Score=25.39 Aligned_cols=73 Identities=12% Similarity=-0.046 Sum_probs=49.8
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
.-.+|.+++=|.......+..|...+..|... ...+..-+-..-|.+|-+.|.+.++++...++.+|..|...
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 44567777777777666676776666665554 22222222244466777888889999999999999999644
No 392
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=60 Score=32.04 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=50.4
Q ss_pred HHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCc-chHHHHHh
Q 007131 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR--SMNRLVAEEAAGGLWNLSVGE-EHKGAIAD 508 (617)
Q Consensus 447 ~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~ 508 (617)
+..+.+++|++ +++..+.+.+.||++.++.-.. +.+|=+++...-++.+|..+. +|+..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 36678888887 8889999999999998877644 467889999999999999766 67776654
No 393
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.22 E-value=50 Score=35.00 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHHhhhc
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTC 67 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~~~~~vc 67 (617)
..|..||.|+...|++||+..|+..+..-+
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~~~ 475 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIENF 475 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHhhh
Confidence 469999999999999999999987655433
No 394
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=27.00 E-value=79 Score=32.82 Aligned_cols=60 Identities=25% Similarity=0.075 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCchHHHHHhC-CHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 523 SSGGDGVLERAAGALANLAADDKCSMEVALAG-GVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~-~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
...+++++++|..++.+++.+.++|....... .-..+++++-.+ .+++-+.|+.++..+-
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 46788999999999999999888876554332 224455666544 3677777777777654
No 395
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=26.73 E-value=1.4e+02 Score=29.41 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred cHHHHHHHHhcCCCCceEeecCCCCCCHHHH-------hcCcCCCeecccCCCCCCHH---HHHHHHhcCCCCCeEEecc
Q 007131 193 CGDAINALAKLCPNLTDIGFLDCLNVDEVAL-------GNVLSVRFLSVAGTSNMKWG---VVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 193 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l-------~~~~~L~~L~l~~~~~i~~~---~l~~l~~~~~~L~~L~l~~ 262 (617)
.++.+.-+-.+-|.++..++.....++...+ ..-++.+.+.+.+. ..++. .+.....-++.|++|++.+
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc
Confidence 3444555555556777777766655655332 33355555555442 22222 2233345567777777777
Q ss_pred CCCCHHHHHHHHhcC
Q 007131 263 TDVGPITISRLLTSS 277 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~ 277 (617)
+.|++.++..++..+
T Consensus 265 nFItg~gi~a~~~al 279 (353)
T KOG3735|consen 265 NFITGLGIMALLRAL 279 (353)
T ss_pred cccccHHHHHHHHHH
Confidence 777766666655543
No 396
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.73 E-value=6.7e+02 Score=28.33 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh--hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchH-
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK--VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHK- 503 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~- 503 (617)
.....+.+.+.+++...-.....++.+++.-+. .+. .....+.-..--...-..+......+|..++. +++.-
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344566666666677777777777777765211 111 11112222222222223456677888899985 44444
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (617)
..+.+.++...++.++. ++++++...|...|..... .++|
T Consensus 518 ~l~~d~~~~~~i~s~lf---sp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLF---SPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred HHHcCcchhhHHHhhee---CCChHHHHHHHHHHHHHhc-CCcH
Confidence 44445889999999994 6888999999999999885 4443
No 397
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=26.24 E-value=5.4e+02 Score=24.03 Aligned_cols=129 Identities=15% Similarity=0.045 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH-------------H-HH----HHHHHHHHHhcCCcch
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNR-------------L-VA----EEAAGGLWNLSVGEEH 502 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~-------------~-~~----~~a~~~L~nL~~~~~~ 502 (617)
+......+|..+..|...+++...+.+.+-++.+.+.|..-++ + +. ..=...|+-++..+.+
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 3666778889999999998888777788778888888875311 1 11 1123567788888888
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHH-HHHHHhcCCchhHHHHHHHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHA-LVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~-L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
...+-+.+....+.++... ++.+.+... ++.+|-...+ |-... |-+.|.++. +.++..|..-|..
T Consensus 157 l~lLe~~~if~~l~~i~~~--~~~~~l~kl---il~~LDY~~~--------~~~R~iLsKaLt~~s-~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSL--SSRDDLLKL---ILSSLDYSVD--------GHPRIILSKALTSGS-ESIRLYATKHLRV 222 (226)
T ss_pred HHHHHHCCHHHHHHHHHcc--CchHHHHHH---HHhhCCCCCc--------cHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 8888888888888888863 223333333 5555533222 22333 345667775 7999999999887
Q ss_pred Hh
Q 007131 582 LA 583 (617)
Q Consensus 582 l~ 583 (617)
+.
T Consensus 223 ll 224 (226)
T PF14666_consen 223 LL 224 (226)
T ss_pred Hh
Confidence 75
No 398
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.90 E-value=2.2e+02 Score=30.14 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.0
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch----HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS----MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~----~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+.++.+++.+ +.+.+..-.+.++. +...+.+ ..+.+.+.++.|+.+|....+..++.+|+..|..|..
T Consensus 20 ~~~v~~llkHI-----~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 20 PNFVDNLLKHI-----DTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred ccHHHHHHHhc-----CCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 44555555555 44455554444444 2222333 3344688999999999866568899999988887754
No 399
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.88 E-value=1.8e+02 Score=24.49 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=58.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCC--cccCCchhHHHHH----h--hCCHHHHHHHHhcCC----HHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDE--NASIDCGRAEAVM----K--DGGIRLLLDLAKSWR----EGLQSEAA 449 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~----~--~~~i~~Lv~lL~~~~----~~~~~~a~ 449 (617)
+.++..+.+ ++......+..|..+...-.+ +......++..+. + ...+..+.+.+.... .++...+.
T Consensus 29 ~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 29 EDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 666666665 355556667667666433211 1111122222222 1 222333444444432 67788888
Q ss_pred HHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 450 KAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL 493 (617)
Q Consensus 450 ~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L 493 (617)
.++.....--+ -..+...+-++.+.++| .+++.++.|+.+|
T Consensus 108 ~~l~s~i~~~~-~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 108 KCLKSWISWIP-IELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHTTTS--HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHhCC-HHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 88888776333 34555555678888888 3444577777765
No 400
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.54 E-value=1.3e+02 Score=23.39 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 482 ~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.-++++.|+..|..++......-.-.+...+..+.+.+.+ +..+.....-|+..|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d-~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLD-PKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHH
Confidence 3478999999999998543222222222355667777765 445556666666666666
No 401
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=24.47 E-value=1.3e+02 Score=29.61 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC---CCCCeeeccCccCCcHH---HHHHHHhcCCCCceEeec
Q 007131 140 DATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC---PKLKKLRLSGIRDICGD---AINALAKLCPNLTDIGFL 213 (617)
Q Consensus 140 ~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~---~~L~~L~l~~~~~i~~~---~l~~l~~~~~~L~~L~l~ 213 (617)
+..+..+-..=+.|+..+++ ....++...+..++..+ ...+.+.+.+- ..++. ++..+.+.++.|++|++.
T Consensus 187 e~~leri~~nd~~l~evnln--n~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLN--NIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred HHHHHHHhcCCCCceeeecc--ccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecc
Confidence 34455555555566666664 23345554444433322 22333344332 22222 233333455666666666
Q ss_pred CCCCCCHHHH
Q 007131 214 DCLNVDEVAL 223 (617)
Q Consensus 214 ~~~~~~~~~l 223 (617)
+| .||..++
T Consensus 264 sn-FItg~gi 272 (353)
T KOG3735|consen 264 SN-FITGLGI 272 (353)
T ss_pred cc-ccccHHH
Confidence 66 5555443
No 402
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=24.04 E-value=3.6e+02 Score=30.50 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=25.6
Q ss_pred hCC--HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 468 EGG--INILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 468 ~~~--i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
.|| |+.|+++|.+.+.++...|+.+|.+...
T Consensus 94 ~gg~~~~~l~~~~~~~~~~~a~~a~~~l~~~~~ 126 (844)
T TIGR00117 94 QGGYNVHPLIDALDSQDANIAPIAAKALSHTLL 126 (844)
T ss_pred cCCCCHHHHHHHHhCCCHHHHHHHHHHHhceEE
Confidence 455 8999999988888899999999987653
No 403
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.01 E-value=7.5e+02 Score=24.86 Aligned_cols=101 Identities=13% Similarity=-0.076 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh---cC----CCCHHHHHHHHHHHHHhccCCCchHHHHHhC
Q 007131 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---WS----SGGDGVLERAAGALANLAADDKCSMEVALAG 554 (617)
Q Consensus 482 ~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---~~----~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 554 (617)
+-.........+..|..++......--...+|.++..+-. ++ ...-.++..|+.+|..++..=.....-++..
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 4566777778888888877554444444467777766532 11 2345789999999999984222111112223
Q ss_pred CHHHHHHHHhcCC-chhHHHHHHHHHHHH
Q 007131 555 GVHALVMLARSCK-FEGVQEQAARALANL 582 (617)
Q Consensus 555 ~~~~L~~ll~~~~-~~~~~~~a~~~L~~l 582 (617)
.+..+.+.+.++. .......|...|..+
T Consensus 310 i~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 310 ITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 3345666554332 234466677777666
No 404
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.00 E-value=56 Score=33.84 Aligned_cols=61 Identities=25% Similarity=0.162 Sum_probs=41.0
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 478 L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
....++++++.|..++.+++.+.++|...... ..-..++.++ ....+++-+.++.++..+-
T Consensus 337 ~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i---~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 337 CAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLI---VTPEPRVNKAAARALAILG 398 (763)
T ss_pred hcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHh---cccccccchhhhHHHHHhh
Confidence 33478999999999999999998888766543 2223345555 2345566666666666554
No 405
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.27 E-value=1.4e+02 Score=29.33 Aligned_cols=57 Identities=23% Similarity=0.146 Sum_probs=43.9
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc---------------hhhHHHHHHhCCHHHHHHHHhc
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN---------------AKVAKAVAEEGGINILAVLARS 480 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~---------------~~~~~~i~~~~~i~~L~~lL~~ 480 (617)
..+...+..++.-|...+...+..|+.+|..++.+ ..+...+.+.||++.++.+|+.
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455667888888888888899999999999872 1234566788999999999874
No 406
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=22.89 E-value=2.3e+02 Score=25.95 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhc
Q 007131 502 HKGAIADAGGVKALVDLIFKWSSGG---------------DGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARS 565 (617)
Q Consensus 502 ~~~~i~~~g~i~~L~~ll~~~~~~~---------------~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~ 565 (617)
.+..+.+.|++..++++|....+.. .++...+...|..++.+. ++...+.+ .++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHH
Confidence 4445556889999999987622221 467788999999999754 44555544 23333333322
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 566 CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.. ...-..+..+|..+-.++. .....+.+ ..++.+++++..
T Consensus 113 ~~-~~~~~~~~d~l~~i~~dN~---~L~~~i~e-~~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQ-IGYGLGALDVLTEIFRDNP---ELCESISE-EHIEKFIELLRK 153 (207)
T ss_dssp CC-H-TTHHHHHHHHHHHTT--------------------------
T ss_pred hh-ccCCchHHHHHHHHHHCcH---HHHHHhhH-HHHHHHHHHHHH
Confidence 11 1111234455555544221 12233322 236666666554
No 407
>PHA02989 ankyrin repeat protein; Provisional
Probab=22.30 E-value=79 Score=33.71 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHHhh
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRASLSS 65 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~~~~~ 65 (617)
..|..||.|+...|+++|+..|+.....
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 5699999999999999999999876554
No 408
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.86 E-value=3.1e+02 Score=27.74 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhc
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~ 497 (617)
.++..+.+-|...++.+...|+.++-.++. ....+..|........|.+++. +..+.|.+....++.+.+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=21.80 E-value=51 Score=34.09 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHH
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRAS 62 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~ 62 (617)
...|..||.|+...|+++|+.+|+..
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~ 409 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDI 409 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhh
Confidence 46699999999999999999998864
No 410
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=21.69 E-value=1.3e+02 Score=17.21 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.++..|+.+|.++.. ..+++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~~--------------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--------------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--------------HhHHHHHHHHhcC
Confidence 478889999998831 2357777777764
No 411
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=20.86 E-value=63 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHccCChH--------hHHHHhhhchhHHHhhc----CCCcccccC
Q 007131 38 VDWTSLPDDTVIQLMSCLNYR--------DRASLSSTCRTWRALGA----SPCLWSSLD 84 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~--------~~~~~~~vck~w~~~~~----~~~~w~~l~ 84 (617)
..|..||.+.|..++...+-. ..+.++-+|+.|+.+.. .+..|..++
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~ 101 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLT 101 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccc
Confidence 579999999999999988632 34579999999998754 344454443
No 412
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=3.5e+02 Score=29.21 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=58.4
Q ss_pred HHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchh
Q 007131 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEG 570 (617)
Q Consensus 491 ~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~ 570 (617)
.++.......+.-..+-..|+...+.. +.+...+...++...+..++|++.+......+...|.+..+-++...+++-.
T Consensus 272 ~~~~~~~K~~~lsd~l~~dg~~q~~~~-~~e~~rd~~~v~~~l~rvlanms~~~~~~~s~~~S~W~sl~s~~~t~~d~l~ 350 (697)
T KOG2029|consen 272 NALLETPKTFELSDGLWDDGGLQHLAV-LQEFDRDGQVVMRALMRVLANMSEDEKLALSDSRSGWVSLVSEMSTTPDSLR 350 (697)
T ss_pred HHHHhccccHHHHHHHHhcchHHHHHH-HHHHhcCChhhhHHHHHHHHhhhcccccchhhhhhhhHHHHHHHhcCchhHH
Confidence 344444444444445555566655544 3333456678999999999999988888888888898886666666654333
Q ss_pred HHHHHHHHHHHH
Q 007131 571 VQEQAARALANL 582 (617)
Q Consensus 571 ~~~~a~~~L~~l 582 (617)
.+..++..+.|+
T Consensus 351 ~~~~sak~man~ 362 (697)
T KOG2029|consen 351 ERALSAKLMANL 362 (697)
T ss_pred HHHHHHHHhccC
Confidence 344455555555
No 413
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.72 E-value=1e+03 Score=25.46 Aligned_cols=146 Identities=11% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HhcCh--HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh--------cCCHHHHH
Q 007131 377 LKQGA--GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK--------SWREGLQS 446 (617)
Q Consensus 377 ~~~~i--~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~--------~~~~~~~~ 446 (617)
.+..+ ..+.+.+-..++..+..|+..|.. .-.-.-.+|-++.++. ..|-....
T Consensus 203 ~ElQlYy~~It~a~~g~~~~~r~eAL~sL~T-----------------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~ 265 (576)
T KOG2549|consen 203 VELQLYYKEITEACTGSDEPLRQEALQSLET-----------------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLI 265 (576)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----------------CccHHHHHHHHHHHHhhheeeccccccHHHHH
Q ss_pred HHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH----------HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHH
Q 007131 447 EAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNR----------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALV 516 (617)
Q Consensus 447 ~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~----------~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~ 516 (617)
..+.+++.|..++...-.-.-..-+|.++.++-+.+. .++..|+..+..++.+......-.....+..+.
T Consensus 266 ~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~ 345 (576)
T KOG2549|consen 266 YLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLS 345 (576)
T ss_pred HHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 517 DLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 517 ~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+.+.+ ........+-|+..|..|
T Consensus 346 k~l~D-~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 346 KALLD-NKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHhcC-CCCCchhhhhHHHHHHHh
No 414
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.32 E-value=2e+02 Score=24.58 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLAT 405 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~ 405 (617)
..+..+|.+.++++|..|+.+|..
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677889999999999999999985
Done!