Query 007131
Match_columns 617
No_of_seqs 367 out of 4357
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 6.6E-27 2.3E-31 235.5 21.7 252 36-295 5-264 (336)
2 3nmw_A APC variant protein; AR 99.9 2.1E-26 7E-31 229.5 16.2 230 375-616 68-321 (354)
3 3nmz_A APC variant protein; pr 99.9 1.9E-25 6.5E-30 229.0 11.4 230 375-616 184-437 (458)
4 3tt9_A Plakophilin-2; cell adh 99.9 8.9E-25 3E-29 202.1 14.0 197 380-584 9-229 (233)
5 1xm9_A Plakophilin 1; armadill 99.9 2.4E-24 8.2E-29 224.9 17.0 178 380-565 3-196 (457)
6 4hxt_A De novo protein OR329; 99.9 1.1E-23 3.6E-28 202.6 16.2 222 381-616 4-228 (252)
7 3nmw_A APC variant protein; AR 99.9 1.1E-23 3.6E-28 210.0 16.3 200 378-588 125-338 (354)
8 4db8_A Armadillo-repeat protei 99.9 6.1E-24 2.1E-28 204.4 13.2 222 382-617 15-239 (252)
9 3l6x_A Catenin delta-1; cateni 99.9 5.1E-23 1.8E-27 215.5 19.6 228 376-611 45-319 (584)
10 1xm9_A Plakophilin 1; armadill 99.9 6.9E-23 2.4E-27 213.8 19.4 225 376-614 40-385 (457)
11 2p1m_B Transport inhibitor res 99.9 2.3E-22 7.8E-27 218.8 22.4 146 37-189 3-166 (594)
12 3nmz_A APC variant protein; pr 99.9 1.5E-22 5E-27 207.6 17.1 200 378-587 241-453 (458)
13 4db6_A Armadillo repeat protei 99.9 8.6E-22 2.9E-26 183.6 19.0 193 381-584 14-209 (210)
14 3l6x_A Catenin delta-1; cateni 99.9 1.6E-22 5.5E-27 211.8 15.6 233 376-616 86-371 (584)
15 3ul1_B Importin subunit alpha- 99.9 2.9E-22 9.9E-27 212.5 15.9 236 366-616 87-374 (510)
16 3ul1_B Importin subunit alpha- 99.9 9.9E-22 3.4E-26 208.4 17.6 226 381-616 59-290 (510)
17 3tpo_A Importin subunit alpha- 99.9 1.3E-21 4.6E-26 208.6 17.7 237 365-616 105-393 (529)
18 3now_A UNC-45 protein, SD10334 99.9 3.8E-22 1.3E-26 216.0 12.0 226 376-616 491-724 (810)
19 3ogk_B Coronatine-insensitive 99.9 2.5E-21 8.5E-26 210.5 18.4 255 40-300 13-374 (592)
20 3now_A UNC-45 protein, SD10334 99.9 1.1E-21 3.8E-26 212.4 14.2 234 377-616 418-681 (810)
21 4db8_A Armadillo-repeat protei 99.9 6.2E-21 2.1E-25 183.3 16.6 197 377-584 51-251 (252)
22 3tpo_A Importin subunit alpha- 99.9 1.1E-20 3.6E-25 201.7 19.5 228 376-616 158-436 (529)
23 3tt9_A Plakophilin-2; cell adh 99.8 1.7E-21 5.8E-26 180.2 10.5 177 429-611 9-205 (233)
24 4hxt_A De novo protein OR329; 99.8 3.1E-20 1E-24 178.4 19.6 201 377-588 41-245 (252)
25 4db6_A Armadillo repeat protei 99.8 2.1E-20 7.1E-25 174.2 14.8 186 424-616 8-196 (210)
26 4b8j_A Importin subunit alpha- 99.8 8.2E-20 2.8E-24 195.4 18.7 226 378-616 73-302 (528)
27 4b8j_A Importin subunit alpha- 99.8 2.4E-19 8.2E-24 191.8 18.2 231 371-615 109-344 (528)
28 1wa5_B Importin alpha subunit; 99.8 1E-18 3.5E-23 186.9 19.9 225 378-616 86-315 (530)
29 1xqr_A HSPBP1 protein; armadil 99.8 1E-18 3.5E-23 169.3 17.0 181 393-585 54-239 (296)
30 1wa5_B Importin alpha subunit; 99.8 9.9E-19 3.4E-23 187.0 18.7 226 377-616 127-357 (530)
31 1jdh_A Beta-catenin; beta-cate 99.8 8.7E-19 3E-23 187.7 14.8 219 381-614 19-241 (529)
32 1xqr_A HSPBP1 protein; armadil 99.8 2E-18 6.8E-23 167.2 15.7 171 441-617 53-226 (296)
33 2z6h_A Catenin beta-1, beta-ca 99.8 1.8E-18 6.3E-23 189.1 15.9 219 380-613 15-237 (644)
34 1jdh_A Beta-catenin; beta-cate 99.8 2.3E-18 7.9E-23 184.4 15.8 225 381-617 268-518 (529)
35 2jdq_A Importin alpha-1 subuni 99.8 6.3E-18 2.2E-22 177.0 16.6 222 380-616 64-292 (450)
36 2z6h_A Catenin beta-1, beta-ca 99.8 7.3E-18 2.5E-22 184.4 17.0 219 381-616 58-279 (644)
37 2jdq_A Importin alpha-1 subuni 99.8 9.9E-18 3.4E-22 175.5 16.9 222 381-616 22-250 (450)
38 2z6g_A B-catenin; FULL-length, 99.7 4.3E-18 1.5E-22 189.2 13.8 225 381-617 401-651 (780)
39 2z6g_A B-catenin; FULL-length, 99.7 9.5E-18 3.2E-22 186.4 14.2 222 377-613 148-373 (780)
40 2ast_B S-phase kinase-associat 99.7 7E-17 2.4E-21 162.1 18.0 180 103-288 93-282 (336)
41 2p1m_B Transport inhibitor res 99.7 2.1E-16 7.1E-21 171.7 22.2 212 81-299 292-526 (594)
42 3ogk_B Coronatine-insensitive 99.7 1.2E-16 4.2E-21 173.4 20.3 151 135-289 362-524 (592)
43 3opb_A SWI5-dependent HO expre 99.7 1.2E-17 4.2E-22 177.1 5.9 225 376-615 453-714 (778)
44 3opb_A SWI5-dependent HO expre 99.7 3.1E-16 1.1E-20 166.4 15.9 236 377-616 373-670 (778)
45 2ca6_A RAN GTPase-activating p 99.6 1.3E-13 4.4E-18 140.9 20.5 108 179-289 159-285 (386)
46 2ca6_A RAN GTPase-activating p 99.5 3.2E-13 1.1E-17 138.0 20.0 187 101-294 92-319 (386)
47 1z7x_W Ribonuclease inhibitor; 99.5 2E-13 6.8E-18 143.2 18.1 202 81-289 6-238 (461)
48 1z7x_W Ribonuclease inhibitor; 99.5 8.3E-13 2.8E-17 138.5 20.7 208 80-295 58-300 (461)
49 3un9_A NLR family member X1; l 99.4 5E-12 1.7E-16 127.4 16.8 140 125-271 101-257 (372)
50 3un9_A NLR family member X1; l 99.4 8.2E-12 2.8E-16 125.9 16.8 173 120-300 67-260 (372)
51 3e4g_A ATP synthase subunit S, 99.3 8.6E-13 2.9E-17 115.4 6.3 93 125-222 61-156 (176)
52 3e4g_A ATP synthase subunit S, 99.3 1.1E-12 3.7E-17 114.8 6.2 101 152-256 62-170 (176)
53 3goz_A Leucine-rich repeat-con 99.3 1.2E-11 4.2E-16 124.9 14.1 158 125-289 80-264 (362)
54 3goz_A Leucine-rich repeat-con 99.3 4.9E-11 1.7E-15 120.5 14.7 192 95-293 14-240 (362)
55 3grl_A General vesicular trans 99.2 3.7E-10 1.3E-14 117.0 15.9 240 373-612 54-323 (651)
56 4fmz_A Internalin; leucine ric 99.2 7.1E-11 2.4E-15 118.7 9.6 177 99-292 128-325 (347)
57 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 4.7E-11 1.6E-15 82.5 4.4 48 37-84 6-53 (53)
58 4fmz_A Internalin; leucine ric 99.1 1.3E-10 4.6E-15 116.6 8.3 170 101-290 175-345 (347)
59 4ezg_A Putative uncharacterize 99.1 4.7E-11 1.6E-15 109.2 4.5 150 102-265 43-193 (197)
60 3ltm_A Alpha-REP4; protein eng 99.1 1.6E-09 5.3E-14 100.3 14.3 169 382-616 22-190 (211)
61 3ltj_A Alpharep-4; protein eng 99.0 2E-09 6.9E-14 98.6 13.8 169 382-616 17-185 (201)
62 1h6t_A Internalin B; cell adhe 99.0 7.6E-11 2.6E-15 115.0 3.8 170 102-292 45-214 (291)
63 1h6u_A Internalin H; cell adhe 99.0 2.1E-10 7.1E-15 112.9 6.6 171 100-292 60-231 (308)
64 4fcg_A Uncharacterized protein 99.0 9E-12 3.1E-16 123.9 -3.2 86 203-292 204-291 (328)
65 3grl_A General vesicular trans 99.0 1.7E-09 5.7E-14 112.1 13.4 218 379-613 21-267 (651)
66 1h6u_A Internalin H; cell adhe 99.0 1.9E-10 6.4E-15 113.2 6.1 172 102-294 40-211 (308)
67 1io0_A Tropomodulin; LRR prote 99.0 8E-09 2.8E-13 92.9 14.9 126 141-289 26-162 (185)
68 1wwl_A Monocyte differentiatio 99.0 1.3E-10 4.6E-15 114.6 3.3 175 101-291 119-309 (312)
69 1ozn_A Reticulon 4 receptor; N 99.0 4.3E-11 1.5E-15 116.6 -0.4 185 100-295 53-242 (285)
70 4ezg_A Putative uncharacterize 99.0 1.1E-10 3.7E-15 106.7 2.0 150 122-290 41-193 (197)
71 2ra8_A Uncharacterized protein 99.0 1E-09 3.5E-14 109.5 9.2 120 178-300 192-328 (362)
72 3rfs_A Internalin B, repeat mo 99.0 4.9E-11 1.7E-15 115.2 -0.5 179 102-294 40-221 (272)
73 4gmo_A Putative uncharacterize 99.0 9.6E-09 3.3E-13 112.2 17.4 197 378-584 33-258 (684)
74 1io0_A Tropomodulin; LRR prote 98.9 1.6E-08 5.6E-13 90.9 14.8 94 123-221 34-138 (185)
75 4fcg_A Uncharacterized protein 98.9 3.1E-11 1.1E-15 119.9 -3.5 179 102-294 80-269 (328)
76 1m9s_A Internalin B; cell inva 98.9 3.1E-10 1.1E-14 121.6 3.7 170 103-293 43-212 (605)
77 2ra8_A Uncharacterized protein 98.9 7.4E-09 2.5E-13 103.3 13.1 178 100-289 136-341 (362)
78 4glp_A Monocyte differentiatio 98.9 2.2E-10 7.4E-15 113.0 1.7 34 253-289 272-305 (310)
79 1o6v_A Internalin A; bacterial 98.9 1.8E-09 6E-14 113.1 8.5 81 203-290 285-365 (466)
80 2z7x_B TOLL-like receptor 1, v 98.9 7.5E-10 2.6E-14 117.8 5.4 182 103-296 302-486 (520)
81 3ltm_A Alpha-REP4; protein eng 98.9 4E-08 1.4E-12 90.7 15.4 155 381-587 52-206 (211)
82 4gmo_A Putative uncharacterize 98.9 2.1E-09 7.3E-14 117.3 7.9 160 427-586 33-216 (684)
83 2z66_A Variable lymphocyte rec 98.9 2E-11 6.7E-16 120.4 -7.8 184 102-295 77-265 (306)
84 2z66_A Variable lymphocyte rec 98.9 2E-11 6.7E-16 120.4 -7.9 181 100-292 49-237 (306)
85 1o6v_A Internalin A; bacterial 98.9 5E-09 1.7E-13 109.6 10.0 104 178-292 242-345 (466)
86 1wwl_A Monocyte differentiatio 98.9 1.5E-10 5.3E-15 114.2 -1.6 181 101-293 93-289 (312)
87 1oyz_A Hypothetical protein YI 98.9 4E-08 1.4E-12 95.1 15.5 106 471-612 130-235 (280)
88 3o53_A Protein LRIM1, AGAP0063 98.9 1.9E-10 6.5E-15 113.8 -1.2 194 81-291 37-250 (317)
89 1ozn_A Reticulon 4 receptor; N 98.8 1.2E-10 4.2E-15 113.3 -2.7 181 102-293 31-216 (285)
90 3ltj_A Alpharep-4; protein eng 98.8 5.8E-08 2E-12 88.8 15.1 151 381-583 47-197 (201)
91 2z80_A TOLL-like receptor 2, v 98.8 6.1E-10 2.1E-14 112.0 1.8 182 101-291 74-290 (353)
92 3v47_A TOLL-like receptor 5B a 98.8 1.1E-09 3.8E-14 114.3 3.8 81 206-290 276-359 (455)
93 2z81_A CD282 antigen, TOLL-lik 98.8 2.1E-09 7.2E-14 115.1 5.0 83 205-294 431-513 (549)
94 3v47_A TOLL-like receptor 5B a 98.8 2.8E-10 9.6E-15 118.9 -1.9 107 179-291 275-384 (455)
95 2o6q_A Variable lymphocyte rec 98.8 2.3E-10 7.9E-15 110.4 -2.5 200 79-294 17-221 (270)
96 2z80_A TOLL-like receptor 2, v 98.8 2.6E-10 8.9E-15 114.8 -2.4 185 101-295 122-318 (353)
97 3oja_A Leucine-rich immune mol 98.8 7.7E-11 2.6E-15 123.7 -6.9 107 178-291 143-250 (487)
98 3rgz_A Protein brassinosteroid 98.8 1.3E-10 4.4E-15 129.5 -5.6 104 177-289 176-280 (768)
99 3bz5_A Internalin-J, INLJ; leu 98.8 2E-09 6.8E-14 111.9 2.9 182 81-292 45-226 (457)
100 3zyi_A Leucine-rich repeat-con 98.8 3.4E-10 1.2E-14 118.0 -3.0 12 102-113 98-109 (452)
101 2z81_A CD282 antigen, TOLL-lik 98.8 2.4E-08 8.2E-13 106.9 11.1 174 102-292 309-487 (549)
102 4glp_A Monocyte differentiatio 98.8 8.1E-09 2.8E-13 101.6 6.8 180 103-291 64-264 (310)
103 3zyi_A Leucine-rich repeat-con 98.8 4.7E-10 1.6E-14 116.9 -2.3 203 81-297 102-309 (452)
104 3zyj_A Leucine-rich repeat-con 98.7 3.6E-10 1.2E-14 117.4 -3.3 87 204-294 206-295 (440)
105 3zyj_A Leucine-rich repeat-con 98.7 2.9E-10 9.9E-15 118.1 -4.2 181 101-292 86-269 (440)
106 3rfs_A Internalin B, repeat mo 98.7 3.8E-10 1.3E-14 108.9 -3.2 172 99-289 59-233 (272)
107 3oja_B Anopheles plasmodium-re 98.7 8.3E-10 2.8E-14 119.3 -0.9 192 81-292 102-338 (597)
108 1xeu_A Internalin C; cellular 98.7 3.8E-10 1.3E-14 108.1 -3.2 148 123-293 39-187 (263)
109 3bz5_A Internalin-J, INLJ; leu 98.7 6E-09 2E-13 108.3 5.5 182 81-293 67-248 (457)
110 3vq2_A TLR4, TOLL-like recepto 98.7 2.2E-10 7.6E-15 124.4 -5.8 179 101-291 348-534 (606)
111 3t6q_A CD180 antigen; protein- 98.7 5.6E-10 1.9E-14 121.2 -2.7 183 99-293 346-538 (606)
112 1oyz_A Hypothetical protein YI 98.7 8.5E-07 2.9E-11 85.7 20.2 136 429-612 129-264 (280)
113 3o6n_A APL1; leucine-rich repe 98.7 9.2E-10 3.2E-14 112.4 -1.1 76 81-159 96-173 (390)
114 1xku_A Decorin; proteoglycan, 98.7 2.3E-09 7.8E-14 106.7 1.6 175 102-292 99-277 (330)
115 1h6t_A Internalin B; cell adhe 98.7 9.1E-09 3.1E-13 100.1 5.7 150 123-293 44-193 (291)
116 3t6q_A CD180 antigen; protein- 98.7 2.9E-10 9.8E-15 123.5 -5.8 203 81-293 304-515 (606)
117 3vq2_A TLR4, TOLL-like recepto 98.7 1.8E-10 6.2E-15 125.1 -7.6 161 123-293 348-512 (606)
118 2je0_A Acidic leucine-rich nuc 98.7 3.2E-09 1.1E-13 92.0 1.8 104 178-286 41-148 (149)
119 2z63_A TOLL-like receptor 4, v 98.7 1.3E-10 4.5E-15 125.2 -8.7 84 203-289 419-505 (570)
120 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 2.4E-09 8E-14 115.0 1.1 182 103-296 331-515 (562)
121 1p9a_G Platelet glycoprotein I 98.7 1.1E-09 3.9E-14 106.5 -1.5 177 103-295 31-212 (290)
122 4ecn_A Leucine-rich repeat pro 98.7 4E-09 1.4E-13 117.2 2.6 181 99-292 444-658 (876)
123 3o53_A Protein LRIM1, AGAP0063 98.7 2.9E-10 9.8E-15 112.5 -6.2 172 103-288 99-272 (317)
124 1m9s_A Internalin B; cell inva 98.7 4.2E-09 1.4E-13 112.9 2.0 151 122-293 40-190 (605)
125 3oja_A Leucine-rich immune mol 98.7 6.6E-10 2.3E-14 116.6 -4.3 105 178-291 119-227 (487)
126 1ogq_A PGIP-2, polygalacturona 98.7 4.6E-11 1.6E-15 117.9 -12.6 176 101-290 74-256 (313)
127 2z62_A TOLL-like receptor 4, v 98.7 5.1E-10 1.8E-14 108.3 -5.1 182 101-294 50-240 (276)
128 1xku_A Decorin; proteoglycan, 98.7 4.2E-09 1.4E-13 104.8 1.3 177 101-291 74-253 (330)
129 2ell_A Acidic leucine-rich nuc 98.6 2.1E-09 7.1E-14 95.4 -1.0 107 178-290 48-159 (168)
130 2je0_A Acidic leucine-rich nuc 98.6 8.6E-09 2.9E-13 89.3 2.4 112 178-293 16-128 (149)
131 3o6n_A APL1; leucine-rich repe 98.6 3.1E-09 1.1E-13 108.5 -0.8 36 101-136 67-104 (390)
132 2ell_A Acidic leucine-rich nuc 98.6 3.8E-09 1.3E-13 93.7 -0.1 131 125-265 24-159 (168)
133 1ogq_A PGIP-2, polygalacturona 98.6 4E-10 1.4E-14 111.2 -7.6 180 100-292 98-282 (313)
134 2z63_A TOLL-like receptor 4, v 98.6 7.1E-10 2.4E-14 119.4 -6.3 181 102-294 346-534 (570)
135 1p9a_G Platelet glycoprotein I 98.6 1.8E-09 6E-14 105.1 -3.1 174 102-291 9-185 (290)
136 3m19_A Variable lymphocyte rec 98.6 2.2E-09 7.4E-14 102.2 -2.7 157 125-293 35-194 (251)
137 3oja_B Anopheles plasmodium-re 98.6 5.4E-09 1.8E-13 112.9 0.0 82 102-189 98-181 (597)
138 3rgz_A Protein brassinosteroid 98.6 1.2E-09 4.1E-14 121.7 -5.4 177 100-290 175-355 (768)
139 2id5_A Lingo-1, leucine rich r 98.6 5.6E-09 1.9E-13 109.6 -0.1 128 101-237 78-210 (477)
140 2id5_A Lingo-1, leucine rich r 98.6 5.1E-09 1.7E-13 110.0 -0.6 180 101-292 102-310 (477)
141 1xeu_A Internalin C; cellular 98.6 1.2E-08 4E-13 97.7 1.8 146 101-266 39-185 (263)
142 4eco_A Uncharacterized protein 98.6 3.6E-09 1.2E-13 115.1 -2.3 179 99-290 202-414 (636)
143 4ecn_A Leucine-rich repeat pro 98.6 1.4E-08 4.8E-13 112.9 2.4 127 101-237 489-629 (876)
144 2z7x_B TOLL-like receptor 1, v 98.5 2.3E-08 7.8E-13 106.3 3.4 131 148-291 321-457 (520)
145 2ft3_A Biglycan; proteoglycan, 98.5 6.3E-09 2.2E-13 103.6 -1.9 83 205-292 193-278 (332)
146 2o6q_A Variable lymphocyte rec 98.5 3.8E-09 1.3E-13 101.8 -3.4 175 104-291 17-194 (270)
147 1ziw_A TOLL-like receptor 3; i 98.5 3.3E-09 1.1E-13 116.8 -4.5 202 81-294 384-600 (680)
148 2xwt_C Thyrotropin receptor; s 98.5 1.7E-09 5.8E-14 102.2 -7.5 177 103-291 31-218 (239)
149 4eco_A Uncharacterized protein 98.4 1.2E-07 4.3E-12 102.9 5.0 113 176-291 203-343 (636)
150 3g06_A SSPH2 (leucine-rich rep 98.4 1E-07 3.5E-12 102.3 4.1 101 178-294 200-300 (622)
151 1a9n_A U2A', U2A'; complex (nu 98.4 4.6E-08 1.6E-12 87.3 0.5 129 150-289 18-151 (176)
152 2ft3_A Biglycan; proteoglycan, 98.4 8.6E-09 2.9E-13 102.6 -5.3 174 103-291 54-254 (332)
153 1pgv_A TMD-1, tropomodulin TMD 98.4 9.1E-06 3.1E-10 72.4 14.7 124 142-288 32-167 (197)
154 3m19_A Variable lymphocyte rec 98.4 2.8E-08 9.6E-13 94.4 -1.7 153 103-266 35-192 (251)
155 1ziw_A TOLL-like receptor 3; i 98.4 1.6E-08 5.3E-13 111.4 -4.0 86 203-291 478-573 (680)
156 1pgv_A TMD-1, tropomodulin TMD 98.4 4.8E-06 1.6E-10 74.2 12.7 89 123-215 39-136 (197)
157 4fdd_A Transportin-1; heat rep 98.3 1.2E-06 4.2E-11 98.8 10.8 221 382-616 177-458 (852)
158 1ds9_A Outer arm dynein; leuci 98.3 2.1E-08 7.1E-13 91.5 -3.8 126 149-284 46-180 (198)
159 3j0a_A TOLL-like receptor 5; m 98.3 6.3E-08 2.1E-12 109.0 -0.9 85 203-291 288-375 (844)
160 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.7E-07 5.9E-12 100.4 2.3 131 148-291 350-486 (562)
161 2z62_A TOLL-like receptor 4, v 98.3 1.4E-08 5E-13 98.0 -5.6 178 103-292 28-214 (276)
162 1b3u_A Protein (protein phosph 98.3 2.5E-06 8.5E-11 91.9 11.3 211 382-616 167-379 (588)
163 3j0a_A TOLL-like receptor 5; m 98.3 3E-08 1E-12 111.6 -4.3 179 103-290 24-216 (844)
164 2xwt_C Thyrotropin receptor; s 98.2 3E-08 1E-12 93.5 -4.4 176 100-290 52-238 (239)
165 3cvr_A Invasion plasmid antige 98.2 2.4E-07 8.3E-12 98.1 1.9 164 103-294 80-246 (571)
166 2o6s_A Variable lymphocyte rec 98.2 3.9E-08 1.3E-12 90.5 -4.6 15 276-290 146-160 (208)
167 1b3u_A Protein (protein phosph 98.2 1.3E-05 4.6E-10 86.1 14.3 209 382-617 90-298 (588)
168 1jl5_A Outer protein YOPM; leu 98.2 3.1E-07 1E-11 95.3 1.2 32 103-136 91-122 (454)
169 3e6j_A Variable lymphocyte rec 98.2 1.8E-07 6.1E-12 87.4 -0.8 111 177-294 62-175 (229)
170 2o6s_A Variable lymphocyte rec 98.2 1.6E-07 5.5E-12 86.3 -1.2 150 123-291 26-178 (208)
171 2v70_A SLIT-2, SLIT homolog 2 98.2 1.2E-07 4.1E-12 88.0 -2.1 115 177-297 55-172 (220)
172 2xot_A Amphoterin-induced prot 98.2 5.9E-08 2E-12 97.7 -4.6 162 125-297 39-208 (361)
173 1a9n_A U2A', U2A'; complex (nu 98.1 2.6E-07 8.8E-12 82.4 -0.2 110 177-292 17-127 (176)
174 2qk2_A LP04448P; mini spindles 98.1 2.1E-05 7.2E-10 73.9 12.8 181 382-584 18-205 (242)
175 3cvr_A Invasion plasmid antige 98.1 2.2E-07 7.4E-12 98.5 -1.2 160 102-292 58-221 (571)
176 4fdd_A Transportin-1; heat rep 98.1 8.9E-06 3E-10 91.8 11.9 213 382-611 218-494 (852)
177 2v9t_B SLIT homolog 2 protein 98.1 1.8E-07 6.3E-12 86.7 -1.9 113 178-296 55-170 (220)
178 3b2a_A TON_1937, putative unch 98.1 1.5E-05 5.2E-10 70.9 10.2 183 382-585 36-219 (265)
179 3g06_A SSPH2 (leucine-rich rep 98.1 2.2E-06 7.4E-11 92.0 5.8 74 205-291 201-274 (622)
180 3l2o_B F-box only protein 4; s 98.1 5.4E-07 1.8E-11 84.0 0.5 46 39-84 4-49 (312)
181 1te4_A Conserved protein MTH18 98.0 5.7E-07 2E-11 75.7 -0.3 123 425-582 9-131 (131)
182 2vgl_B AP-2 complex subunit be 98.0 2.2E-06 7.5E-11 92.1 4.0 177 382-583 52-230 (591)
183 4g8a_A TOLL-like receptor 4; l 98.0 1.1E-07 3.7E-12 103.6 -6.4 115 176-295 466-584 (635)
184 4g8a_A TOLL-like receptor 4; l 98.0 3.9E-07 1.3E-11 99.3 -2.4 157 125-291 52-214 (635)
185 1jl5_A Outer protein YOPM; leu 98.0 2.7E-06 9.2E-11 88.1 4.1 51 103-159 111-161 (454)
186 1te4_A Conserved protein MTH18 98.0 1.3E-06 4.5E-11 73.4 0.5 117 382-540 15-131 (131)
187 2vgl_B AP-2 complex subunit be 97.9 2.5E-05 8.4E-10 83.9 10.0 184 382-585 124-312 (591)
188 1ibr_B P95, importin beta-1 su 97.9 1.4E-05 4.8E-10 83.0 7.7 222 382-617 175-425 (462)
189 2e31_A FBS1, F-box only protei 97.9 3.1E-06 1.1E-10 80.1 2.1 46 38-83 49-95 (297)
190 2wfh_A SLIT homolog 2 protein 97.9 2.6E-06 8.8E-11 77.0 1.2 110 179-295 31-143 (193)
191 1dce_A Protein (RAB geranylger 97.8 3.1E-06 1.1E-10 90.1 1.2 106 179-293 441-548 (567)
192 1w8a_A SLIT protein; signaling 97.8 1.5E-06 5E-11 78.7 -1.1 112 179-295 29-143 (192)
193 2xot_A Amphoterin-induced prot 97.8 1.2E-06 4E-11 88.1 -2.2 134 151-293 39-178 (361)
194 4b8c_D Glucose-repressible alc 97.8 2.8E-06 9.6E-11 93.4 0.5 83 177-266 245-329 (727)
195 3e6j_A Variable lymphocyte rec 97.8 3.4E-06 1.1E-10 78.7 0.9 108 178-292 39-149 (229)
196 3dad_A FH1/FH2 domain-containi 97.8 0.00035 1.2E-08 66.5 14.2 178 431-612 121-317 (339)
197 4b8c_D Glucose-repressible alc 97.8 1.9E-06 6.5E-11 94.7 -2.1 81 204-290 246-328 (727)
198 1ds9_A Outer arm dynein; leuci 97.7 1.8E-06 6.1E-11 78.5 -2.3 108 176-292 45-154 (198)
199 2o6r_A Variable lymphocyte rec 97.7 4.1E-06 1.4E-10 74.5 -0.0 110 179-294 28-140 (177)
200 2qk1_A Protein STU2; STU2P, XM 97.7 0.00012 4E-09 68.9 9.9 189 383-584 20-220 (249)
201 2v70_A SLIT-2, SLIT homolog 2 97.7 3.7E-06 1.3E-10 77.8 -0.5 110 179-293 32-144 (220)
202 2v9t_B SLIT homolog 2 protein 97.7 3.9E-06 1.3E-10 77.7 -0.5 110 179-294 32-144 (220)
203 1w63_A Adapter-related protein 97.7 0.0002 7E-09 77.1 12.0 202 382-617 110-330 (618)
204 1ibr_B P95, importin beta-1 su 97.6 0.00014 4.9E-09 75.3 9.7 188 382-585 220-438 (462)
205 1dce_A Protein (RAB geranylger 97.6 1.6E-05 5.4E-10 84.6 2.2 81 206-293 442-523 (567)
206 3b2a_A TON_1937, putative unch 97.6 0.00068 2.3E-08 60.5 11.6 148 427-587 32-182 (265)
207 2bpt_A Importin beta-1 subunit 97.5 0.00034 1.1E-08 78.9 11.7 215 382-614 372-611 (861)
208 1u6g_C TIP120 protein, CAND1; 97.5 0.00015 5.2E-09 85.2 9.1 213 382-617 51-272 (1230)
209 3sb4_A Hypothetical leucine ri 97.5 5.7E-06 1.9E-10 81.9 -2.7 91 192-289 213-308 (329)
210 3sb4_A Hypothetical leucine ri 97.5 2.5E-05 8.6E-10 77.2 1.6 113 165-285 212-328 (329)
211 3dad_A FH1/FH2 domain-containi 97.5 0.0056 1.9E-07 58.3 17.1 186 382-574 121-326 (339)
212 3v7d_B Cell division control p 97.4 2.1E-05 7.2E-10 81.8 0.3 49 37-85 12-61 (464)
213 1qgr_A Protein (importin beta 97.4 0.00078 2.7E-08 76.0 12.1 213 382-611 220-462 (876)
214 2qk2_A LP04448P; mini spindles 97.4 0.0012 4E-08 61.8 11.3 142 382-542 59-205 (242)
215 1u6g_C TIP120 protein, CAND1; 97.4 0.00094 3.2E-08 78.4 13.0 208 382-612 9-225 (1230)
216 2ovr_B FBW7, F-BOX/WD repeat p 97.3 8.9E-05 3E-09 76.6 3.3 47 37-83 16-62 (445)
217 1w8a_A SLIT protein; signaling 97.3 9.3E-06 3.2E-10 73.3 -3.7 58 204-264 77-137 (192)
218 1ho8_A Vacuolar ATP synthase s 97.3 0.0016 5.3E-08 65.4 11.7 223 383-617 171-464 (480)
219 1p22_A F-BOX/WD-repeat protein 97.3 3.5E-05 1.2E-09 79.5 -0.4 47 37-83 8-58 (435)
220 1w63_A Adapter-related protein 97.3 0.0037 1.3E-07 67.3 15.3 176 382-584 73-263 (618)
221 3tjz_B Coatomer subunit gamma; 97.2 0.011 3.7E-07 57.8 16.8 138 382-545 71-208 (355)
222 4ady_A RPN2, 26S proteasome re 97.1 0.0056 1.9E-07 67.1 15.0 172 382-584 475-676 (963)
223 3rw6_A Nuclear RNA export fact 97.1 0.0007 2.4E-08 63.7 7.1 82 201-285 166-258 (267)
224 2o6r_A Variable lymphocyte rec 97.1 5.5E-05 1.9E-09 67.1 -0.7 83 178-265 51-136 (177)
225 4ady_A RPN2, 26S proteasome re 97.1 0.025 8.4E-07 62.2 19.3 145 382-543 510-677 (963)
226 3g39_A Variable lymphocyte rec 97.1 0.00011 3.9E-09 64.5 1.0 105 181-294 11-118 (170)
227 2bpt_A Importin beta-1 subunit 97.1 0.0016 5.5E-08 73.3 10.5 213 382-611 227-465 (861)
228 2wfh_A SLIT homolog 2 protein 97.1 9.4E-05 3.2E-09 66.6 0.2 59 203-264 76-137 (193)
229 3rw6_A Nuclear RNA export fact 97.0 0.00073 2.5E-08 63.6 6.1 86 173-261 164-259 (267)
230 2r9u_A Variable lymphocyte rec 97.0 0.00015 5E-09 64.1 1.2 86 205-294 33-121 (174)
231 1qgr_A Protein (importin beta 97.0 0.0055 1.9E-07 69.1 14.2 191 382-585 262-480 (876)
232 4ay9_X Follicle-stimulating ho 97.0 3.9E-06 1.3E-10 83.9 -10.9 34 103-136 30-65 (350)
233 2qk1_A Protein STU2; STU2P, XM 96.9 0.007 2.4E-07 56.6 11.3 151 382-542 63-220 (249)
234 4ay9_X Follicle-stimulating ho 96.8 1.5E-05 5.3E-10 79.5 -7.7 184 100-294 51-239 (350)
235 1ho8_A Vacuolar ATP synthase s 96.8 0.15 5.3E-06 51.2 20.4 142 433-577 172-343 (480)
236 2vgl_A Adaptor protein complex 96.6 0.0038 1.3E-07 67.0 8.6 142 382-543 114-271 (621)
237 3tjz_B Coatomer subunit gamma; 96.6 0.027 9.4E-07 55.0 13.5 101 382-500 107-207 (355)
238 4fdw_A Leucine rich hypothetic 96.4 0.00032 1.1E-08 71.1 -1.4 124 148-289 223-356 (401)
239 2vgl_A Adaptor protein complex 96.4 0.033 1.1E-06 59.7 13.8 139 382-544 77-218 (621)
240 3g39_A Variable lymphocyte rec 96.3 0.00093 3.2E-08 58.6 0.9 82 179-265 30-114 (170)
241 2r9u_A Variable lymphocyte rec 96.2 0.00097 3.3E-08 58.7 0.7 82 179-265 33-117 (174)
242 3c2g_A SYS-1 protein; beta-cat 96.0 0.12 4.1E-06 48.8 13.3 134 445-581 260-400 (619)
243 2ifg_A High affinity nerve gro 95.9 0.0024 8.2E-08 63.3 2.2 88 204-296 30-121 (347)
244 2iw3_A Elongation factor 3A; a 95.8 0.33 1.1E-05 54.0 18.5 193 381-584 97-324 (986)
245 2db0_A 253AA long hypothetical 95.7 0.87 3E-05 39.1 17.0 174 382-585 35-211 (253)
246 4fdw_A Leucine rich hypothetic 95.4 0.001 3.5E-08 67.3 -2.9 143 123-288 178-333 (401)
247 2iw3_A Elongation factor 3A; a 95.3 0.07 2.4E-06 59.3 10.9 192 394-613 29-226 (986)
248 3ebb_A Phospholipase A2-activa 94.7 0.23 7.8E-06 47.4 11.2 136 441-578 161-300 (304)
249 2db0_A 253AA long hypothetical 93.9 2.8 9.7E-05 36.0 18.0 172 382-584 72-246 (253)
250 1wa5_C Importin alpha RE-expor 93.5 2.9 0.0001 47.3 19.5 186 390-585 416-629 (960)
251 4ffb_C Protein STU2; tubulin f 93.4 0.98 3.3E-05 42.6 12.9 188 384-585 14-213 (278)
252 3eg5_B Protein diaphanous homo 93.3 2.2 7.7E-05 42.1 15.6 141 422-566 104-276 (383)
253 2fv2_A RCD1 required for cell 93.2 1.1 3.9E-05 40.6 11.9 174 397-582 74-266 (268)
254 2f31_A Diaphanous protein homo 93.0 2 7E-05 39.1 14.0 146 426-574 41-218 (233)
255 2ifg_A High affinity nerve gro 92.7 0.03 1E-06 55.3 1.1 80 209-292 12-94 (347)
256 4ffb_C Protein STU2; tubulin f 92.3 0.39 1.3E-05 45.4 8.5 175 433-617 14-200 (278)
257 4gt6_A Cell surface protein; l 91.8 0.082 2.8E-06 53.1 3.2 32 203-234 309-341 (394)
258 1upk_A MO25 protein; transfera 91.8 9.2 0.00031 36.4 17.5 197 382-588 81-287 (341)
259 1lrv_A LRV, leucine-rich repea 91.1 0.11 3.7E-06 47.9 2.9 30 547-578 211-240 (244)
260 3oc3_A Helicase MOT1, MOT1; re 90.9 0.22 7.4E-06 50.7 4.9 204 382-617 177-392 (800)
261 2fv2_A RCD1 required for cell 90.8 5.1 0.00018 36.4 13.3 164 366-540 84-266 (268)
262 3ebb_A Phospholipase A2-activa 90.3 9.5 0.00033 36.1 15.7 152 429-585 104-264 (304)
263 2of3_A ZYG-9; multifunctional 89.8 2.3 7.9E-05 39.4 10.6 97 382-496 135-234 (266)
264 3c2g_A SYS-1 protein; beta-cat 89.7 2.8 9.7E-05 39.8 11.0 118 395-521 259-378 (619)
265 2of3_A ZYG-9; multifunctional 89.4 2.2 7.4E-05 39.6 10.1 176 382-584 49-236 (266)
266 4fs7_A Uncharacterized protein 89.2 0.017 5.9E-07 58.2 -4.7 80 202-288 294-376 (394)
267 4gt6_A Cell surface protein; l 88.5 0.24 8.2E-06 49.7 3.3 101 149-263 286-388 (394)
268 2bnx_A Diaphanous protein homo 87.9 13 0.00043 36.8 15.2 136 427-565 46-213 (386)
269 2x1g_F Cadmus; transport prote 87.0 4.8 0.00017 45.5 13.3 192 382-585 42-274 (971)
270 4hat_C Exportin-1; heat repeat 86.7 4.2 0.00014 46.1 12.3 144 391-545 465-621 (1023)
271 1wa5_C Importin alpha RE-expor 86.3 6.2 0.00021 44.6 13.7 185 386-584 462-670 (960)
272 3oc3_A Helicase MOT1, MOT1; re 86.3 0.27 9.4E-06 50.0 2.1 162 393-583 242-403 (800)
273 2x19_B Importin-13; nuclear tr 85.8 8.6 0.0003 43.3 14.6 134 389-543 459-600 (963)
274 3eg5_B Protein diaphanous homo 85.4 6 0.00021 39.0 11.3 117 464-584 105-246 (383)
275 2f31_A Diaphanous protein homo 85.1 4.6 0.00016 36.7 9.7 114 468-584 42-180 (233)
276 1lrv_A LRV, leucine-rich repea 83.4 0.27 9.2E-06 45.3 0.5 33 419-451 65-97 (244)
277 2x1g_F Cadmus; transport prote 81.3 7.8 0.00027 43.8 11.7 132 391-542 476-615 (971)
278 4hat_C Exportin-1; heat repeat 80.5 6.6 0.00023 44.4 10.6 138 440-585 465-619 (1023)
279 3l9t_A Putative uncharacterize 78.7 15 0.00052 33.0 10.1 133 383-546 75-211 (240)
280 1upk_A MO25 protein; transfera 78.4 12 0.00041 35.6 9.8 189 422-616 72-270 (341)
281 4fs7_A Uncharacterized protein 77.9 0.37 1.3E-05 48.3 -0.6 160 102-283 229-393 (394)
282 3ldz_A STAM-1, signal transduc 77.6 7.8 0.00027 31.9 7.5 70 382-457 45-114 (140)
283 3m1i_C Exportin-1; heat repeat 75.4 18 0.00062 41.2 12.5 188 382-585 51-264 (1049)
284 2bnx_A Diaphanous protein homo 74.5 15 0.00051 36.2 10.0 114 468-584 46-184 (386)
285 3u0r_A Apoptosis inhibitor 5; 73.5 56 0.0019 32.8 13.5 88 439-540 39-127 (507)
286 3gjx_A Exportin-1; transport, 72.6 38 0.0013 38.4 13.8 191 382-585 63-276 (1073)
287 4h09_A Hypothetical leucine ri 72.4 0.97 3.3E-05 44.8 0.8 124 123-263 215-343 (379)
288 1x5b_A Signal transducing adap 71.5 14 0.00049 31.2 7.8 70 382-457 55-125 (163)
289 2x19_B Importin-13; nuclear tr 69.3 28 0.00095 39.1 12.1 98 480-585 460-557 (963)
290 3ldz_A STAM-1, signal transduc 69.2 9.2 0.00032 31.4 6.0 69 429-497 43-113 (140)
291 4h09_A Hypothetical leucine ri 69.2 1.2 4.1E-05 44.1 0.7 124 148-288 214-343 (379)
292 3g2s_A C-terminal fragment of 68.3 23 0.00079 29.3 8.2 70 382-457 51-126 (149)
293 1lsh_A Lipovitellin (LV-1N, LV 65.4 93 0.0032 35.3 15.2 173 382-586 394-578 (1056)
294 1juq_A ADP-ribosylation factor 62.9 21 0.00071 30.5 7.1 70 382-457 53-128 (171)
295 3qml_C Protein SLS1, nucleotid 62.3 1E+02 0.0035 28.8 12.9 146 382-541 25-188 (315)
296 1x5b_A Signal transducing adap 62.2 17 0.00059 30.7 6.4 69 429-497 53-124 (163)
297 3u0r_A Apoptosis inhibitor 5; 61.8 27 0.00093 35.0 8.5 95 383-496 33-127 (507)
298 1mhq_A ADP-ribosylation factor 61.4 18 0.00062 30.0 6.3 70 382-457 41-116 (148)
299 3zyq_A Hepatocyte growth facto 60.8 24 0.00081 31.7 7.5 70 382-457 48-118 (226)
300 3l9t_A Putative uncharacterize 59.1 50 0.0017 29.7 9.1 131 432-585 75-208 (240)
301 3g2s_A C-terminal fragment of 58.8 17 0.00059 30.1 5.7 70 429-498 49-126 (149)
302 3m1i_C Exportin-1; heat repeat 57.7 53 0.0018 37.3 11.6 99 440-543 465-570 (1049)
303 3rfe_A Platelet glycoprotein I 57.5 4.4 0.00015 32.9 1.9 43 254-297 32-74 (130)
304 1mhq_A ADP-ribosylation factor 54.7 15 0.00051 30.5 4.7 69 429-497 39-115 (148)
305 3zyq_A Hepatocyte growth facto 54.1 21 0.00073 32.0 6.0 69 429-497 46-117 (226)
306 1dvp_A HRS, hepatocyte growth 53.2 39 0.0013 30.1 7.7 69 382-456 45-114 (220)
307 1juq_A ADP-ribosylation factor 50.6 27 0.00093 29.7 5.8 69 429-497 51-127 (171)
308 1lsh_A Lipovitellin (LV-1N, LV 48.5 1.9E+02 0.0065 32.8 14.0 127 382-544 443-578 (1056)
309 3rfe_A Platelet glycoprotein I 47.3 12 0.00041 30.2 3.0 35 206-240 32-68 (130)
310 3gae_A Protein DOA1; UFD3, CDC 42.3 17 0.00057 33.4 3.4 105 439-546 101-221 (253)
311 3gjx_A Exportin-1; transport, 41.8 88 0.003 35.5 9.7 103 482-586 492-597 (1073)
312 3qml_C Protein SLS1, nucleotid 41.3 2.3E+02 0.0078 26.5 13.9 147 432-583 26-188 (315)
313 2f42_A STIP1 homology and U-bo 40.9 2.9 9.8E-05 36.1 -1.9 41 283-325 104-147 (179)
314 3ibv_A Exportin-T; karyopherin 40.8 1.9E+02 0.0065 32.4 12.3 188 373-586 39-262 (980)
315 1dvp_A HRS, hepatocyte growth 40.5 40 0.0014 30.0 5.6 69 429-497 43-114 (220)
316 2kr4_A Ubiquitin conjugation f 39.1 2.2 7.5E-05 31.7 -2.6 33 286-320 15-47 (85)
317 3vld_A DNA mismatch repair pro 39.0 3.1E+02 0.011 27.5 13.3 145 430-584 75-225 (500)
318 3a6p_A Exportin-5; exportin-5, 37.3 77 0.0026 36.6 8.7 180 389-585 57-277 (1204)
319 1elk_A Target of MYB1; superhe 36.7 1.1E+02 0.0037 25.5 7.3 70 382-457 56-130 (157)
320 2kre_A Ubiquitin conjugation f 36.5 2.3 7.8E-05 32.8 -2.9 33 286-320 30-62 (100)
321 4atg_A TAF6; transcription, TF 33.3 65 0.0022 28.0 5.5 112 429-541 41-161 (196)
322 3gs3_A Symplekin, LD45768P; he 32.2 2.9E+02 0.0099 25.1 10.1 99 382-496 15-117 (257)
323 1wgm_A Ubiquitin conjugation f 30.4 3.3 0.00011 31.7 -2.9 33 286-320 23-56 (98)
324 3o2t_A Symplekin; heat repeat, 29.9 2.5E+02 0.0086 27.3 9.6 99 382-496 25-127 (386)
325 3pst_A Protein DOA1; protein d 29.7 83 0.0028 31.1 6.1 105 439-546 273-393 (425)
326 1elk_A Target of MYB1; superhe 27.8 1.1E+02 0.0039 25.3 6.0 69 429-497 54-129 (157)
327 3l3f_X Protein DOA1, DOA1/UFD3 24.1 1.1E+02 0.0039 29.4 5.9 104 439-545 210-329 (362)
328 2bay_A PRE-mRNA splicing facto 23.8 9.1 0.00031 26.1 -1.3 32 287-320 5-37 (61)
329 4atg_A TAF6; transcription, TF 23.0 1.3E+02 0.0046 26.0 5.6 103 481-583 58-161 (196)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=6.6e-27 Score=235.48 Aligned_cols=252 Identities=23% Similarity=0.379 Sum_probs=201.9
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCC
Q 007131 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAES 115 (617)
Q Consensus 36 ~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 115 (617)
+...|++||+|++.+||+||+.+|+.+++.|||+|+.+..++.+|++++++...+.+..+..+.. ++++.|+++++..
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l 82 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFM 82 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh--ccceEEEcCCccc
Confidence 34579999999999999999999999999999999999988999999999998888766555432 5788898887644
Q ss_pred ccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH
Q 007131 116 ADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG 194 (617)
Q Consensus 116 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~ 194 (617)
..... ...+++|++|++++|. +++.++..+...|++|++|+++ +| .+++.....+.. +++|++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~--~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 83 DQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLE--GL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECT--TC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCH
T ss_pred cccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCc--Cc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCH
Confidence 32211 1257889999998887 7877788888888999999995 45 688777776665 88999999998877888
Q ss_pred HHHHHHHhcCCCCceEeecCCCCCCHHH----HhcCc-CCCeecccCCC-CCCHHHHHHHHhcCCCCCeEEeccCC-CCH
Q 007131 195 DAINALAKLCPNLTDIGFLDCLNVDEVA----LGNVL-SVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVSRTD-VGP 267 (617)
Q Consensus 195 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~----l~~~~-~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~ 267 (617)
.++..+...+++|++|++++|..+++.+ +..++ +|++|++++|. .+++..+......+++|++|++++|. +++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 7788777788999999999886677643 46788 99999998886 68888888888889999999999987 666
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 268 ITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 268 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
..+. .+..+++|++|++++|..+.+.+
T Consensus 238 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 238 DCFQ-EFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp GGGG-GGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHH-HHhCCCCCCEeeCCCCCCCCHHH
Confidence 6654 34568899999999887666664
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=2.1e-26 Score=229.50 Aligned_cols=230 Identities=23% Similarity=0.266 Sum_probs=193.8
Q ss_pred HHHhcCh-HHHHHhhcc-----------CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcCC
Q 007131 375 FWLKQGA-GLLLSLMQS-----------TQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWR 441 (617)
Q Consensus 375 ~~~~~~i-~~l~~~l~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~~ 441 (617)
.+.+.|. +.|+.+|.+ .++.+|.+|+++|.||+..++.++ ..+. ..|++|.|+++|++++
T Consensus 68 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k-------~~i~~~~GaIp~LV~LL~s~~ 140 (354)
T 3nmw_A 68 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK-------ATLCSMKGCMRALVAQLKSES 140 (354)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH-------HHHHHCHHHHHHHHHGGGCSC
T ss_pred HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH-------HHHHHcCCcHHHHHHHHCCCC
Confidence 3456666 999999953 246789999999999987765442 4454 4566999999999999
Q ss_pred HHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CcchHHHHH-hcCChHHHH
Q 007131 442 EGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSV-GEEHKGAIA-DAGGVKALV 516 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~-~~g~i~~L~ 516 (617)
+++++.|+++|+||+.. +++|..+++.|+|+.|+++| ++.++++++.|+.+|+||+. +++++..++ ..|+++.|+
T Consensus 141 ~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv 220 (354)
T 3nmw_A 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHH
Confidence 99999999999999984 67899999999999999985 55788999999999999998 668898888 699999999
Q ss_pred HHHhhcCCC--CHHHHHHHHHHHHHhcc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC
Q 007131 517 DLIFKWSSG--GDGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (617)
Q Consensus 517 ~ll~~~~~~--~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (617)
++|.. .+. ..++++.|+++|+||+. +++++..+.+.|+++.|+++|++++ .++++.|+++|+||+.. +.
T Consensus 221 ~lL~~-~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~---~~ 295 (354)
T 3nmw_A 221 GTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSAR---NP 295 (354)
T ss_dssp HHTTC-CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSS---CH
T ss_pred HHhcc-CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCC---CH
Confidence 99964 111 12699999999999996 6778999999999999999999875 89999999999999963 23
Q ss_pred CccccccccCcHHHHHHHhcCCCCCC
Q 007131 591 NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 591 ~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.....+.+.|+++.|+++++++++.+
T Consensus 296 ~~~~~i~~~G~i~~Lv~LL~s~~~~i 321 (354)
T 3nmw_A 296 KDQEALWDMGAVSMLKNLIHSKHKMI 321 (354)
T ss_dssp HHHHHHHHTTHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 35677789999999999999876544
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=229.05 Aligned_cols=230 Identities=23% Similarity=0.261 Sum_probs=193.6
Q ss_pred HHHhcCh-HHHHHhhcc-----------CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcCC
Q 007131 375 FWLKQGA-GLLLSLMQS-----------TQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWR 441 (617)
Q Consensus 375 ~~~~~~i-~~l~~~l~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~~ 441 (617)
.+.+.|+ +.|+.++.. .++.++.+|+++|.||+..++.++ ..+. ..|++|.|+++|.+++
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k-------~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK-------ATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH-------HHHHHCHHHHHHHHHGGGCSC
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH-------HHHHHcCCcHHHHHHHHhCCC
Confidence 3456666 999999942 346789999999999987765442 3454 4667999999999999
Q ss_pred HHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CcchHHHHH-hcCChHHHH
Q 007131 442 EGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSV-GEEHKGAIA-DAGGVKALV 516 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~-~~g~i~~L~ 516 (617)
+++++.|+++|+||+.. +++|..+++.|||+.|+++| ...++++++.|+.+|+||+. +++++..|+ ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999984 67899999999999999986 45788999999999999998 778999998 699999999
Q ss_pred HHHhhcCCCC--HHHHHHHHHHHHHhcc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC
Q 007131 517 DLIFKWSSGG--DGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (617)
Q Consensus 517 ~ll~~~~~~~--~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (617)
.+|.. .+.. .+++++|+++|+||+. +++++..+.+.|+++.|+++|++++ .++++.|+++|+||+... .
T Consensus 337 ~LL~~-~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~---~ 411 (458)
T 3nmz_A 337 GTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARN---P 411 (458)
T ss_dssp HHTTC-CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSC---H
T ss_pred HHhcC-CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCC---H
Confidence 99964 1111 2599999999999995 6778999999999999999999885 899999999999999632 3
Q ss_pred CccccccccCcHHHHHHHhcCCCCCC
Q 007131 591 NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 591 ~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.....+.+.|+++.|+++++++++.+
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL~s~~~~v 437 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLIHSKHKMI 437 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 35677889999999999999876543
No 4
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=8.9e-25 Score=202.15 Aligned_cols=197 Identities=21% Similarity=0.205 Sum_probs=171.7
Q ss_pred ChHHHHHhhccCCH--HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 380 GAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i~~l~~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.++.++++|.++++ ++|..|+.+|.+|+..++.+ +..+.+.|+||.|+++|+++++++|+.|+++|+||+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34899999999877 89999999999998766554 3688999999999999999999999999999999998
Q ss_pred -chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh---c----------
Q 007131 458 -NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---W---------- 522 (617)
Q Consensus 458 -~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---~---------- 522 (617)
+++++..|++.|||+.|+++|.+ .+.++++.|+++||||+..+++|..|++. ++++|++++.. +
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 68899999999999999999985 78999999999999999999999999984 79999887631 1
Q ss_pred CCCCHHHHHHHHHHHHHhccCC-CchHHHHHhC-CHHHHHHHHhcC-----CchhHHHHHHHHHHHHhc
Q 007131 523 SSGGDGVLERAAGALANLAADD-KCSMEVALAG-GVHALVMLARSC-----KFEGVQEQAARALANLAA 584 (617)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~-~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~ 584 (617)
...+..++++|+++|+||+..+ ++|..|.+.+ +++.|+.+++.+ .+++.+++|+.+|+|||.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1236789999999999999755 7899999874 579999999752 246899999999999986
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.91 E-value=2.4e-24 Score=224.87 Aligned_cols=178 Identities=24% Similarity=0.279 Sum_probs=157.9
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
.++.++.+|.++++++|..|+.+|.+|+..++.. +..+.+.|++|.|+++|++++++++..|+++|.||+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-------~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-------HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999999998655443 25889999999999999999999999999999999996
Q ss_pred hhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-------cCC------
Q 007131 459 AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-------WSS------ 524 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-------~~~------ 524 (617)
++++..+++.|||+.|+++|. +.++++++.|+++|+||+.++++|..+++ |++|.|+++|.. .++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 899999999999999999999 78999999999999999999999999999 999999999931 011
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhc
Q 007131 525 GGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARS 565 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~ 565 (617)
.+..+.+.|+++|+|||.+++++..+.+. |+++.|+.++++
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35678889999999999887788888887 999999887764
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=1.1e-23 Score=202.64 Aligned_cols=222 Identities=36% Similarity=0.448 Sum_probs=198.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-h
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-A 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~ 459 (617)
++.+++++.+++++++..|+++|.+++...+++ +..+.+.|+++.|+++|++++++++..|+++|.+++.+ +
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASA-------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 489999999999999999999999998665433 36888999999999999999999999999999999997 8
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.+..+.+.|+++.|+.+|++++++++..|+++|.||+ ..++++..+.+.|+++.|++++. +.++.++..|+++|+
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999 56789999999999999999995 577899999999999
Q ss_pred HhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 539 NLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 539 ~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
||+...+. +..+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+++++++++++
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPT---SAIKAIVDAGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBH---HHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHCCCcHHH
Confidence 99986554 578889999999999999875 8999999999999997433 25567778999999999999876654
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.91 E-value=1.1e-23 Score=209.96 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=176.9
Q ss_pred hcC-hHHHHHhhccCCHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 007131 378 KQG-AGLLLSLMQSTQEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ 454 (617)
..| +|.|+++|.+++++++..|+++|+||+.. ++.+ +..+.+.|+++.|+++| ++.++++++.|+.+|+|
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-------k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-------KKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHH-------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHH-------HHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 567 69999999999999999999999999864 2233 36888999999999985 55689999999999999
Q ss_pred hcc-chhhHHHHH-HhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHHhhcCC
Q 007131 455 LSV-NAKVAKAVA-EEGGINILAVLARSMNR----LVAEEAAGGLWNLSV----GEEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 455 ls~-~~~~~~~i~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~----~~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
|+. .++++..++ ..|+++.|+++|.+.++ ++++.|+++|+||+. +++++..+.+.|+++.|+.+|. +
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~ 274 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---S 274 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---C
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---C
Confidence 999 778898998 68889999999987654 589999999999995 7789999999999999999995 5
Q ss_pred CCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 525 GGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
++..++++|+++|+||+. +++++..+++.|+++.|++++++++ +++++.|+++|.||+...+.
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCG
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 788999999999999995 6678999999999999999999885 89999999999999985443
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=6.1e-24 Score=204.41 Aligned_cols=222 Identities=30% Similarity=0.370 Sum_probs=197.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
+.++++|++++++++..|+.+|+++....+. .+..+.+.|+++.|+++|++++++++..|+++|.+++. +++
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~-------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNE-------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHH-------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCc-------hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 8899999999999999999999887655333 33678999999999999999999999999999999998 688
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH-HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
.+..+.+.|+++.|+++|.++++++++.|+++|+||+.+++.+ ..+.+.|+++.|+++|. +++..++..|+++|+|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 88899999999999995 4688999999999999
Q ss_pred hccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 540 LAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 540 l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
|+..+ +.+..+.+.|+++.|++++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+++++++++++|
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCH---HHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 99755 45777788999999999999874 8999999999999996433 255677789999999999998877653
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.90 E-value=5.1e-23 Score=215.55 Aligned_cols=228 Identities=22% Similarity=0.280 Sum_probs=188.9
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
|...+++.++++|.++++++|..|+++|.+|+...+++ +..+.+.|+||.||++|+++++++++.|+++|.||
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~-------k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-------KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999998765554 37899999999999999999999999999999999
Q ss_pred ccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-----------
Q 007131 456 SVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----------- 521 (617)
Q Consensus 456 s~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----------- 521 (617)
+.+ +++|..|++.|||+.|+++|++ .+.++++.|+++||||+.+++++..|++ ++++.|++++..
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-----
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccc
Confidence 984 8999999999999999999998 6789999999999999999999999996 579999998731
Q ss_pred ----cCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCC-HHHHHHHHhcC-----CchhHHHHHHHHHHHHhccCC---
Q 007131 522 ----WSSGGDGVLERAAGALANLAADDKC-SMEVALAGG-VHALVMLARSC-----KFEGVQEQAARALANLAAHGD--- 587 (617)
Q Consensus 522 ----~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~-~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~--- 587 (617)
.+..++.++++|+++|.|||..++. |..|++.++ ++.|+.++++. .+.+.+++|+++|+|||...+
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 0233579999999999999987754 899988655 57999998752 346899999999999997411
Q ss_pred -------------------CCCCccccccccCcHHHHHHHhcC
Q 007131 588 -------------------SNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 588 -------------------~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
....-.+.+++.++++.|+.+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 011112334455677888888853
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.90 E-value=6.9e-23 Score=213.84 Aligned_cols=225 Identities=23% Similarity=0.264 Sum_probs=186.3
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIA 453 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~ 453 (617)
+.+.|. |.|+++|.+++++++..|+++|+||+...+++ +..+.+.|++|.|+++|. ++++++++.|+++|+
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-------k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-------KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 345555 99999999999999999999999998754444 478889999999999999 779999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHh--------c--------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CChHHHH
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLAR--------S--------MNRLVAEEAAGGLWNLSVGEEHKGAIADA-GGVKALV 516 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~--------~--------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~-g~i~~L~ 516 (617)
||+.+++.|..+++ |+++.|+++|. + .++++++.|+++|+||+.+++++..+++. |+++.|+
T Consensus 113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv 191 (457)
T 1xm9_A 113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191 (457)
T ss_dssp HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHH
T ss_pred HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHH
Confidence 99999899999999 99999999993 2 24567779999999999888999999997 9999999
Q ss_pred HHHhhc------C-------------------------------------------------------------------
Q 007131 517 DLIFKW------S------------------------------------------------------------------- 523 (617)
Q Consensus 517 ~ll~~~------~------------------------------------------------------------------- 523 (617)
.+|..+ .
T Consensus 192 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (457)
T 1xm9_A 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271 (457)
T ss_dssp HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCS
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccccc
Confidence 888631 0
Q ss_pred -----------------------CCCHHHHHHHHHHHHHhccCCCc------hHHHHHhCCHHHHHHHHhcCCchhHHHH
Q 007131 524 -----------------------SGGDGVLERAAGALANLAADDKC------SMEVALAGGVHALVMLARSCKFEGVQEQ 574 (617)
Q Consensus 524 -----------------------~~~~~~~~~a~~~L~~l~~~~~~------~~~i~~~~~~~~L~~ll~~~~~~~~~~~ 574 (617)
+.++.+++.|+++|+||+..... +..+.+.|+++.|++++.+++ ++++..
T Consensus 272 ~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~ 350 (457)
T 1xm9_A 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRS 350 (457)
T ss_dssp SCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHH
T ss_pred CchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHH
Confidence 11356777889999999976543 223346899999999999986 899999
Q ss_pred HHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 575 AARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 575 a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
|+++|.||+.+. .... ++..|+++.|+++|.+++.
T Consensus 351 A~~aL~nls~~~----~~~~-~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 351 GASLLSNMSRHP----LLHR-VMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HHHHHHHHHTSG----GGHH-HHHHHTHHHHHHTTTSCCS
T ss_pred HHHHHHHHhcCH----HHHH-HHHHhhhHHHHHhccCCCC
Confidence 999999999743 2333 3456899999999998654
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2.3e-22 Score=218.79 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=74.0
Q ss_pred CCCCCCCCHHHHHHHHccCC-hHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCC
Q 007131 37 VVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAES 115 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~-~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 115 (617)
.+.|+.||+|++.+||+||+ .+|+.+++.|||+|+++. ...|.++++....... ...+..++++|++|+++++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccC--HHHHHhhCCCceEEeccCCCc
Confidence 36799999999999999999 999999999999999882 2334444443321110 112334445555555554421
Q ss_pred cc-----------------HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 116 AD-----------------SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 116 ~~-----------------~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.. ......+++|++|++++|. +++..+..+...|++|++|+|. +|..+++.++..+...|
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~--~~~~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS--SCEGFSTDGLAAIAATC 155 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE--SCEEEEHHHHHHHHHHC
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC--CcCCCCHHHHHHHHHhC
Confidence 10 0111234455555554443 4444444444444455555553 24344444444444444
Q ss_pred CCCCeeeccCc
Q 007131 179 PKLKKLRLSGI 189 (617)
Q Consensus 179 ~~L~~L~l~~~ 189 (617)
++|++|++++|
T Consensus 156 ~~L~~L~L~~~ 166 (594)
T 2p1m_B 156 RNLKELDLRES 166 (594)
T ss_dssp TTCCEEECTTC
T ss_pred CCCCEEeCcCC
Confidence 44444444443
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=207.64 Aligned_cols=200 Identities=23% Similarity=0.266 Sum_probs=176.1
Q ss_pred hcC-hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 007131 378 KQG-AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l 455 (617)
..| +|.|+.+|.+++++++..|+++|++|+...+ +..+..+.+.|+++.|+++|. +.++++++.|+.+|+||
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~------~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD------VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC------HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC------HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567 6999999999999999999999999986421 123478889999999999864 46889999999999999
Q ss_pred cc-chhhHHHHH-HhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHHhhcCCC
Q 007131 456 SV-NAKVAKAVA-EEGGINILAVLARSMNR----LVAEEAAGGLWNLSV----GEEHKGAIADAGGVKALVDLIFKWSSG 525 (617)
Q Consensus 456 s~-~~~~~~~i~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~----~~~~~~~i~~~g~i~~L~~ll~~~~~~ 525 (617)
+. .++++..|+ ..|+++.|+++|...++ ++++.|+++|+||+. +++++..+++.|+++.|+.+|. ++
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~---~~ 391 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---SH 391 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS---CS
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc---CC
Confidence 99 778899998 68899999999987654 589999999999995 7789999999999999999995 57
Q ss_pred CHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 526 GDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
+..++++|+++|+||+. +++++..+++.|+++.|++++++++ +++++.|+++|.||+...+
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCH
Confidence 88999999999999994 6778999999999999999999875 8999999999999998543
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=8.6e-22 Score=183.64 Aligned_cols=193 Identities=28% Similarity=0.349 Sum_probs=174.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.+.++.++++++++++..|+++|.+++..+++. +..+.+.|+++.|+++|.+++++++..|+++|.+++. ++
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 389999999999999999999999998655443 3688999999999999999999999999999999996 67
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.+..+.+.|+++.|+.+|.+.++.+++.|+++|+||+... +.+..+.+.|+++.|++++. +++..++..|+++|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999644 66778889999999999995 468899999999999
Q ss_pred HhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 539 NLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 539 ~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|++.. ++.+..+.+.|+++.|++++.+++ +++++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 99987 566888889999999999999875 8999999999999975
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.88 E-value=1.6e-22 Score=211.79 Aligned_cols=233 Identities=20% Similarity=0.200 Sum_probs=184.4
Q ss_pred HHhcC-hHHHHHhhccCCHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHH
Q 007131 376 WLKQG-AGLLLSLMQSTQEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAI 452 (617)
Q Consensus 376 ~~~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L 452 (617)
+.+.| ||.|+++|.++++++|..|+++|+||+.. ++++ +..|.+.|+|+.|+++|.+ .+.++++.|+++|
T Consensus 86 V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-------k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 86 VRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-------KIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-------HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-------HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34555 49999999999999999999999999874 3444 3789999999999999998 5789999999999
Q ss_pred HHhccchhhHHHHHHhCCHHHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCc-chHHHHHhc-CCh
Q 007131 453 ANLSVNAKVAKAVAEEGGINILAVLAR------------------SMNRLVAEEAAGGLWNLSVGE-EHKGAIADA-GGV 512 (617)
Q Consensus 453 ~~ls~~~~~~~~i~~~~~i~~L~~lL~------------------~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~-g~i 512 (617)
++||.++++|..|++ +|++.|++++. ..++++++.|+++|.||+... ++|..+++. |++
T Consensus 159 ~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 159 WNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp HHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred HHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 999999999999996 57999999872 135789999999999999876 569999985 556
Q ss_pred HHHHHHHhhc---CCCCHHHHHHHHHHHHHhccCC--------------------------CchHHHHHhCCHHHHHHHH
Q 007131 513 KALVDLIFKW---SSGGDGVLERAAGALANLAADD--------------------------KCSMEVALAGGVHALVMLA 563 (617)
Q Consensus 513 ~~L~~ll~~~---~~~~~~~~~~a~~~L~~l~~~~--------------------------~~~~~i~~~~~~~~L~~ll 563 (617)
+.|+.++... ...+.+.+++|+++|+||+... .+.+.+.+.++++.++.++
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 7999999741 2346689999999999999641 1122233445577889999
Q ss_pred hcCCchhHHHHHHHHHHHHhccCCCCC-CccccccccCcHHHHHHHhcCCCCCC
Q 007131 564 RSCKFEGVQEQAARALANLAAHGDSNS-NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
..+..+.++++|+++|+|||....... .....+.+.|+++.|++++.++++.|
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v 371 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV 371 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 765568999999999999997432111 11235567899999999999876543
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.88 E-value=2.9e-22 Score=212.47 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=193.6
Q ss_pred ccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHH
Q 007131 366 ESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443 (617)
Q Consensus 366 ~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 443 (617)
....++...+ .+.|+ |.|+++|. ++++++|..|+++|+|+|+..+++ ++.+++.|++|.|+++|++++++
T Consensus 87 ~e~~ppi~~i-i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~-------~~~vv~~GaIp~Lv~lL~s~~~~ 158 (510)
T 3ul1_B 87 REKQPPIDNI-IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHAH 158 (510)
T ss_dssp CSSCCCHHHH-HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHH
T ss_pred CCCCchHHHH-HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHH
Confidence 3334445554 46666 99999996 466899999999999998766554 37899999999999999999999
Q ss_pred HHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh-------------------------------------------
Q 007131 444 LQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLAR------------------------------------------- 479 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~------------------------------------------- 479 (617)
+++.|+++|+||+.+ ++.+..+.+.|+++.|+.+|.
T Consensus 159 v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 999999999999985 667888888888877776653
Q ss_pred ----cCCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHh
Q 007131 480 ----SMNRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALA 553 (617)
Q Consensus 480 ----~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~ 553 (617)
+.+++++..|+++|++|+..+. ....+.+.|+++.|+.+|. +.+..++..++++|+|++..+ ..+..+++.
T Consensus 239 ~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc---CCChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 3455677788999999997664 4566678999999999995 578899999999999998655 457788999
Q ss_pred CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 554 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
|+++.|+.++.+++ +.++..|+++|.||+.... .....+.+.|+++.|+.++.+++.++
T Consensus 316 g~l~~L~~LL~~~~-~~v~~~A~~aL~nl~a~~~---~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 316 GALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQ---DQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp TGGGGCC-CTTCSS-HHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHHHHcCcH---HHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 99999999999875 8999999999999987433 25667778999999999999876554
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.87 E-value=9.9e-22 Score=208.36 Aligned_cols=226 Identities=19% Similarity=0.207 Sum_probs=190.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-c
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-N 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~ 458 (617)
++.+|+.+++++++.|..|+..++.|.+. +.+..+ +.+++.|++|.||++|+.. ++++|..|+++|.||+. +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~-e~~ppi-----~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSR-EKQPPI-----DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTC-SSCCCH-----HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CCCchH-----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999998544 344333 6899999999999999865 68999999999999987 6
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhc--CCCCHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKW--SSGGDGVLERAAG 535 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~a~~ 535 (617)
++++..+++.|+||.|+++|+++++++++.|+++|+||+.+ ++.|..+.+.|++++|+.++... ......+.+.+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 77899999999999999999999999999999999999976 47889999999999999999641 1123467899999
Q ss_pred HHHHhccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 536 ALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 536 ~L~~l~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+++|++.+.... ......++++.|++++.+++ ++++..|+++|.+|+..++. ....+.+.|+++.|++++.+++.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLLGATEL 288 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHH---HHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhh---hHHHHHhcccchhhhhhhcCCCh
Confidence 999999876553 33344578999999999885 89999999999999874332 45667789999999999998765
Q ss_pred CC
Q 007131 615 GV 616 (617)
Q Consensus 615 ~v 616 (617)
.+
T Consensus 289 ~v 290 (510)
T 3ul1_B 289 PI 290 (510)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.87 E-value=1.3e-21 Score=208.63 Aligned_cols=237 Identities=19% Similarity=0.230 Sum_probs=194.3
Q ss_pred hccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCH
Q 007131 365 AESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 442 (617)
+....+....+ .+.|+ |.|+++|. ++++++|..|+++|.|++....++ +..+++.|++|.|+.+|.++++
T Consensus 105 s~~~~~~i~~i-i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-------~~~vv~~Gaip~Lv~LL~s~~~ 176 (529)
T 3tpo_A 105 SREKQPPIDNI-IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHA 176 (529)
T ss_dssp TSSSCCCHHHH-HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCH
T ss_pred cCCCCchHHHH-HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHCCCHHHHHHHHcCCCH
Confidence 33333444453 46666 99999996 567999999999999998765544 3688999999999999999999
Q ss_pred HHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh------------------------------------------
Q 007131 443 GLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLAR------------------------------------------ 479 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~------------------------------------------ 479 (617)
++++.|+++|+||+.+ ++.+..+.+.|++++|+.+|.
T Consensus 177 ~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L 256 (529)
T 3tpo_A 177 HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256 (529)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHH
Confidence 9999999999999984 678888888887777766553
Q ss_pred -----cCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHH
Q 007131 480 -----SMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVAL 552 (617)
Q Consensus 480 -----~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~ 552 (617)
+.+++++..|+++|.+++..+ +....+.+.|+++.|+.+|. +.+..++..|+.+|+|++..+ ..+..+.+
T Consensus 257 ~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 345567778889999998766 45566778999999999994 578899999999999998755 45788899
Q ss_pred hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 553 AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 553 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.|+++.|+.++.+++ +.++..|+++|.||+..... ....+.+.|+++.|+.++.+++.++
T Consensus 334 ~g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~~~~~---~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 334 AGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp TTGGGGHHHHTTCSS-HHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred cccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcccHH---HHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999999999875 89999999999999975332 5667778999999999999876554
No 18
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.86 E-value=3.8e-22 Score=216.01 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=189.2
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
+.+.|+ |.|+.++.++++++|+.|+++|.||+... + .|..+++.|++++|+.+|.++++..++.|+++|.+
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~-------~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n 562 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLK-E-------LRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-H-------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-H-------HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 456676 99999999999999999999999997432 2 34789999999999999999999999999999999
Q ss_pred hccchhhHHHH---HHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 455 LSVNAKVAKAV---AEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 455 ls~~~~~~~~i---~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
|+.+.+....+ ...|++++|+++|..+ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|. ++++.+
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~V 639 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYL 639 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHH
Confidence 98743322221 1246899999999865 3445678999999999874 78999999999999999996 467899
Q ss_pred HHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccc-cCcHHHHHH
Q 007131 530 LERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQ 607 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~g~~~~L~~ 607 (617)
++.|+++|+||+.+++.+..+++ .|.++.|+.++.+++ ..++..|+++|+||+...+. ....+++ .|+++.|++
T Consensus 640 q~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~---~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 640 TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVK---CCEKILAIASWLDILHT 715 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHH---HHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHH---HHHHHHHHcCCHHHHHH
Confidence 99999999999998888888885 688999999999875 89999999999999974222 3445556 899999999
Q ss_pred HhcCCCCCC
Q 007131 608 LTRSPHEGV 616 (617)
Q Consensus 608 ll~~~~~~v 616 (617)
++.+++.++
T Consensus 716 LL~s~d~~v 724 (810)
T 3now_A 716 LIANPSPAV 724 (810)
T ss_dssp HHTCSSHHH
T ss_pred HHCCCCHHH
Confidence 999887654
No 19
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.5e-21 Score=210.47 Aligned_cols=255 Identities=18% Similarity=0.241 Sum_probs=161.4
Q ss_pred CCCCCHHHHHHHHccC-ChHhHHHHhhhchhHHHhhcCCC--c-------------------ccccCCCC----------
Q 007131 40 WTSLPDDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPC--L-------------------WSSLDLRA---------- 87 (617)
Q Consensus 40 ~~~LP~e~l~~I~~~L-~~~~~~~~~~vck~w~~~~~~~~--~-------------------w~~l~l~~---------- 87 (617)
...||||++.+||+|| +.+|+.+++.|||+|+.+..... . .+.++++.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 3589999999999999 89999999999999998732100 0 01122211
Q ss_pred ----CCCCHHHHHHHHHhCCCceEEEecCCCCccHHHH---hcCCC-ccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 88 ----HKCDIAMAASLASRCMNLQKLRFRGAESADSIIH---LQARN-LRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 88 ----~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~-L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
.......+..+...+++|++|+|++|...+.... ..+++ |++|++++|..+++.++..+...|++|++|+|+
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 172 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT
T ss_pred cccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc
Confidence 0112233445555566666666666644433221 12333 666666666655666666666666667776664
Q ss_pred CCCCCCCCH---HHHHHHHhcCCCCCeeeccCccCC---cHHHHHHHHhcCCCCceEeecCCCCCC--------------
Q 007131 160 PDFCERITS---DAVKAIALCCPKLKKLRLSGIRDI---CGDAINALAKLCPNLTDIGFLDCLNVD-------------- 219 (617)
Q Consensus 160 ~~~~~~i~~---~~l~~l~~~~~~L~~L~l~~~~~i---~~~~l~~l~~~~~~L~~L~l~~~~~~~-------------- 219 (617)
+| .+++ ..+..+...+++|++|+++++ .+ +...+..+...+|+|++|++++|....
T Consensus 173 --~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 173 --ES-SFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp --TC-EEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred --cc-cccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 24 2222 224444445566666666554 22 355666666677777777777652100
Q ss_pred ---------------------------------H----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 220 ---------------------------------E----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 220 ---------------------------------~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
. ..+..+++|++|++++|. +++..+..+...|++|++|+++
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-
Confidence 0 112456788888888875 7888877777888888888888
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccC----------CCCCChhHHHHHH
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALN----------CPVLEEENNISAV 300 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~----------c~~~~~~~~~~~~ 300 (617)
+.+++..+..+..++++|++|++++ |..+++.+...+.
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 5577777888888888888888885 7778877655544
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.86 E-value=1.1e-21 Score=212.36 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=190.4
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccC----------------------Cchh---HHHHHhhCCH
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASI----------------------DCGR---AEAVMKDGGI 430 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~----------------------~~~~---~~~i~~~~~i 430 (617)
.+.|+ |.|++++++++..++..|+++|.||+...+....+ ++.. .+.+++.|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 34555 99999999999999999999999998754322000 0011 2678899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH---
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA--- 507 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~--- 507 (617)
|.|+.+|.++++.+|+.|+++|.|||.+++++..+++.|++++|+.+|.++++.+++.|+++|.||+.+.+....+.
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986544333221
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
..|++|+|+.+|. ++.+...+..|+++|.||+..+ +.+..+++.|+++.|+.++.+++ +.++..|+++|+||+..+
T Consensus 578 ~~~aIppLv~LL~--~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 578 SLDVIRPLLNLLQ--QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp HHHTHHHHHHTTS--TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSH
T ss_pred hhcHHHHHHHHhC--CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCh
Confidence 1469999999995 2334455678999999999875 66889999999999999999875 899999999999999844
Q ss_pred CCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 587 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+. ....+...|+++.|+.++++++..+
T Consensus 655 ~~---~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 655 DV---IKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HH---HHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HH---HHHHHhccCcHHHHHHHhcCCCHHH
Confidence 32 3333323799999999999876543
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=6.2e-21 Score=183.30 Aligned_cols=197 Identities=30% Similarity=0.387 Sum_probs=176.2
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
.+.|+ +.+++++.+++++++..|+++|.+++...+++ +..+.+.|+++.|+++|++++++++..|+++|.++
T Consensus 51 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44555 99999999999999999999999998655443 47889999999999999999999999999999999
Q ss_pred ccchhhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.+++.+ ..+.+.|+++.|+++|.++++.+++.|+++|+||+..+ +.+..+.+.|+++.|+.++. +.++.++..|
T Consensus 124 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a 200 (252)
T 4db8_A 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEA 200 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHH
T ss_pred hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHH
Confidence 9988888 88999999999999999999999999999999999754 67788888999999999995 4688999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+++|+|++.. ++.+..+.+.|+++.|++++.+++ ++++..|+++|.||+.
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence 9999999964 455778889999999999999875 7999999999999974
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.85 E-value=1.1e-20 Score=201.67 Aligned_cols=228 Identities=20% Similarity=0.230 Sum_probs=187.9
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh---------------------------
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD--------------------------- 427 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~--------------------------- 427 (617)
+.+.|+ |.|+.++.+++++++..|+++|.||+..++.. +..+.+.
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~-------r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-------RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH-------HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 456666 99999999999999999999999998665432 2333333
Q ss_pred --------------------CCHHHHHHHHhcCCHHHHHHHHHHHHHhccch-hhHHHHHHhCCHHHHHHHHhcCCHHHH
Q 007131 428 --------------------GGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-KVAKAVAEEGGINILAVLARSMNRLVA 486 (617)
Q Consensus 428 --------------------~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~i~~L~~lL~~~~~~~~ 486 (617)
+++|.|+++|.+.+++++..|+++|.+++.+. +....+.+.|+++.|+.+|.+.++.++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 310 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 310 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHH
Confidence 44555555666667788889999999999854 456677789999999999999999999
Q ss_pred HHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHh
Q 007131 487 EEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 487 ~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~ 564 (617)
..|+.+|+|++... ..+..+.+.|+++.|+.+|. +.++.++..|+++|+|++.+.+ .+..+.+.|+++.|+.++.
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~ 387 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 387 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc
Confidence 99999999998654 67888889999999999994 5788999999999999997654 4777889999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 565 SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 565 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++ .+++..|+++|.|++..++. .....+++.|+++.|+++|.+++.++
T Consensus 388 ~~~-~~v~~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i 436 (529)
T 3tpo_A 388 KAD-FKTQKAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKI 436 (529)
T ss_dssp SSC-HHHHHHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred CCC-HHHHHHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence 886 89999999999999975432 24456778999999999999876543
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=180.20 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=152.8
Q ss_pred CHHHHHHHHhcCCH--HHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHH
Q 007131 429 GIRLLLDLAKSWRE--GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~--~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~ 504 (617)
.++.++++|.++++ +++..|++.|.+++. +++++..+.+.||||+|+++|+++++++++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999999887 899999999999997 67899999999999999999999999999999999999997 568999
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh---cC------------Cch
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SC------------KFE 569 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~---~~------------~~~ 569 (617)
.|.+.|+||.|+++|.. +.+.+++++|+++||||+..+++|..|++. +++.|++++. ++ .++
T Consensus 89 ~I~~~GaI~~Lv~lL~~--~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQ--TRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999963 467899999999999999999999999874 6899987542 22 146
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccccc-ccCcHHHHHHHhcC
Q 007131 570 GVQEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRS 611 (617)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~g~~~~L~~ll~~ 611 (617)
+++++|+++|+||+...+. ....++ ..|+|+.|+.+++.
T Consensus 166 ~v~~na~~~L~nLss~~~~---~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGAD---GRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHH---HHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHH---HHHHHHHCCCcHHHHHHHHHh
Confidence 8999999999999974322 344444 45789999999886
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.85 E-value=3.1e-20 Score=178.36 Aligned_cols=201 Identities=37% Similarity=0.493 Sum_probs=179.0
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
.+.|+ +.+++++.+++++++..|+++|.+++...+.. +..+.+.|+++.|+++|++++++++..|+++|.++
T Consensus 41 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 41 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45555 99999999999999999999999998654433 47888999999999999999999999999999999
Q ss_pred c-cchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 S-VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s-~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+ .+++.+..+.+.|+++.|+++|.+.+++++..|+++|+||+... +.+..+.+.|+++.|+.++. +.++.++..|
T Consensus 114 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a 190 (252)
T 4hxt_A 114 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEA 190 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCCHHHHHHH
Confidence 9 57889999999999999999999999999999999999999754 56688889999999999995 5788999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 534 AGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
+++|++++.. ++.+..+.+.|+++.|++++.+++ +++++.|+++|.||+.....
T Consensus 191 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 191 ARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCc
Confidence 9999999974 445778889999999999999875 89999999999999985544
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=2.1e-20 Score=174.23 Aligned_cols=186 Identities=30% Similarity=0.353 Sum_probs=162.6
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Ccc
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEE 501 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~ 501 (617)
....+..+.|+.+|.+++++++..|+++|.+++. +++.+..+.+.|+++.|+++|+++++++++.|+++|.|++. +++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3467889999999999999999999999999995 67889999999999999999999999999999999999995 568
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 502 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
++..+.+.|+++.|+.+|. +.++.++..|+++|+|++...+ .+..+.+.|+++.|++++.+++ .+++..|+++|.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 163 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALS 163 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8899999999999999995 4688999999999999997554 4677889999999999999875 899999999999
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+|+..++. ....+.+.|+++.|++++.++++++
T Consensus 164 ~l~~~~~~---~~~~~~~~g~i~~L~~ll~~~~~~v 196 (210)
T 4db6_A 164 NIASGGNE---QKQAVKEAGALEKLEQLQSHENEKI 196 (210)
T ss_dssp HHHTSCHH---HHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHcCCcH---HHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 99985333 5667778999999999999877654
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.83 E-value=8.2e-20 Score=195.43 Aligned_cols=226 Identities=22% Similarity=0.222 Sum_probs=194.4
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCC-CcccCCchhHHHHHhhCCHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVIND-ENASIDCGRAEAVMKDGGIRLLLDLAKSWR-EGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l 455 (617)
...++.++++|.+++++++..|+.+|++++.... .. ...+++.|+++.|+++|.+++ +.++..|+++|.++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~-------~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPP-------IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNI 145 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCC-------HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCch-------HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4456999999999999999999999999976543 22 267889999999999999886 99999999999999
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.+ ++.+..+++.|+++.|+.+|.++++++++.|+++|+||+.+ +..+..+.+.|+++.|+.+|. .+.+..++..|
T Consensus 146 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--~~~~~~v~~~a 223 (528)
T 4b8j_A 146 ASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--EHTKLSMLRNA 223 (528)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--TTCCHHHHHHH
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--cCCCHHHHHHH
Confidence 995 78899999999999999999999999999999999999966 467889999999999999995 24678999999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+++|++|+...+........|+++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+++
T Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~---~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTND---KIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHH---HHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHH---HHHHHHHcCHHHHHHHHHcCCC
Confidence 9999999987655555566899999999998875 89999999999999964332 3456678899999999999876
Q ss_pred CCC
Q 007131 614 EGV 616 (617)
Q Consensus 614 ~~v 616 (617)
+.|
T Consensus 300 ~~v 302 (528)
T 4b8j_A 300 PSV 302 (528)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=2.4e-19 Score=191.80 Aligned_cols=231 Identities=20% Similarity=0.209 Sum_probs=194.1
Q ss_pred cchHHHHhcChHHHHHhhccCC-HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHH
Q 007131 371 GLDDFWLKQGAGLLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (617)
Q Consensus 371 ~~~~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 449 (617)
....+....+++.|+++|.+++ +.++..|+++|.+++....++ +..+.+.|+++.|+.+|.++++.++..|+
T Consensus 109 ~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~ 181 (528)
T 4b8j_A 109 PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN-------TKVVIDHGAVPIFVKLLGSSSDDVREQAV 181 (528)
T ss_dssp CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhCCcHHHHHHHhcCCCHHHHHHHH
Confidence 3344333444599999998876 999999999999998654433 36788999999999999999999999999
Q ss_pred HHHHHhccc-hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCH
Q 007131 450 KAIANLSVN-AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (617)
Q Consensus 450 ~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 527 (617)
++|.+|+.+ ++.+..+.+.|+++.|+.+| ...++.++..|+++|++|+............|+++.|+.+|. +.++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~~ 258 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SNDE 258 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCCH
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCCH
Confidence 999999985 66789999999999999999 567899999999999999987544444455899999999994 5788
Q ss_pred HHHHHHHHHHHHhccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHH
Q 007131 528 GVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~ 606 (617)
.++..|+++|.+++...+.+ ..+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+
T Consensus 259 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~ 334 (528)
T 4b8j_A 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDD---AQTQCIIDHQALPCLL 334 (528)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCH---HHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCH---HHHHHHHHhhhHHHHH
Confidence 99999999999999776654 57788899999999999885 8999999999999997433 2455667899999999
Q ss_pred HHhcCC-CCC
Q 007131 607 QLTRSP-HEG 615 (617)
Q Consensus 607 ~ll~~~-~~~ 615 (617)
.++.++ ++.
T Consensus 335 ~lL~~~~~~~ 344 (528)
T 4b8j_A 335 SLLTQNLKKS 344 (528)
T ss_dssp HHHHSCCCHH
T ss_pred HHHcCCCcHH
Confidence 999887 543
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.80 E-value=1e-18 Score=186.86 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=192.6
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccC-CCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVIN-DENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 455 (617)
...++.+++.|.+++++++..|+.+|+++.... ... ...+++.|+++.|+++|.++ ++.++..|+++|.++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~-------~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP-------IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCS-------HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 345699999999999999999999999986543 222 25788999999999999987 899999999999999
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.. ++.+..+++.|+++.|+.+|.+.++++++.|+++|+||+.. ++.+..+.+.|+++.|+.++. +.+..++..|
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a 235 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTA 235 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHH
Confidence 994 56788889999999999999999999999999999999976 478888899999999999996 3788999999
Q ss_pred HHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+++|++|+... +........++++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.++
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~ 311 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQE---AIQAVIDVRIPKRLVELLSHE 311 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHH---HHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCHH---HHHHHHhcCcHHHHHHHHCCC
Confidence 99999999775 55556666899999999999875 89999999999999974322 345566789999999999877
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
+..+
T Consensus 312 ~~~v 315 (530)
T 1wa5_B 312 STLV 315 (530)
T ss_dssp CHHH
T ss_pred Chhh
Confidence 6543
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=1e-18 Score=169.25 Aligned_cols=181 Identities=22% Similarity=0.169 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCC
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGG 470 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~ 470 (617)
.+.+..|+..|.+++...+ + +..+...|+++.|+. +|.+++++++..|+++|++++. +++.+..+++.||
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-n-------a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~ 125 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-N-------AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA 125 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-H-------HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhChh-h-------HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 3567888899998865433 2 256889999999999 9999999999999999999998 4668899999999
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC-CCch
Q 007131 471 INILAVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCS 547 (617)
Q Consensus 471 i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 547 (617)
++.|+.+|++ .++.+++.|+++|.||+.+. .....+.+.|+++.|+.+|. +++..++..|+++|++|+.. ++.+
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCChHHH
Confidence 9999999996 48899999999999999755 56778888999999999996 47889999999999999865 5668
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..+++.|+++.|+.+|.+++ ..+++.|+.+|.+|+..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 89999999999999999885 89999999999999974
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.80 E-value=9.9e-19 Score=186.98 Aligned_cols=226 Identities=23% Similarity=0.211 Sum_probs=192.2
Q ss_pred HhcC-hHHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 377 LKQG-AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 377 ~~~~-i~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
.+.| ++.|++++.++ ++.++..|+++|.+++....+. +..+.+.|+++.|+++|.+++++++..|+++|.+
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~-------~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ-------TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444 49999999886 8999999999999998654333 3678899999999999999999999999999999
Q ss_pred hccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++.+ ++.+..+...|+++.|+.+|.+.+++++..|+++|++|+... .........|+++.|+.+|. +.++.++..
T Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~ 276 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMDTETLVD 276 (530)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHH
T ss_pred HhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCCHHHHHH
Confidence 9985 678889999999999999999999999999999999999765 44445556799999999995 567899999
Q ss_pred HHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 533 AAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 533 a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
|+++|.+|+... +....+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+
T Consensus 277 a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDL---QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHH---HHHHHHHcchHHHHHHHHcC
Confidence 999999999765 44777788899999999999875 89999999999999874332 44556678999999999998
Q ss_pred CCCCC
Q 007131 612 PHEGV 616 (617)
Q Consensus 612 ~~~~v 616 (617)
++..+
T Consensus 353 ~~~~v 357 (530)
T 1wa5_B 353 PKENI 357 (530)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 76543
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.78 E-value=8.7e-19 Score=187.67 Aligned_cols=219 Identities=23% Similarity=0.228 Sum_probs=191.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~ 458 (617)
++.++.++.++++.++..|+.+|.+|+...+ + +..+. ..|+++.|+++|.++ +++++..|+.+|++++.+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~-------~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-H-------HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-c-------HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999999999975432 2 23455 458999999999875 899999999999999999
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
++++..+.+.|+++.|+++|++++++++..|+++|+|++.. ++.+..+.+.|+++.|++++. +++.+++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 467888888999999999996 46789999999999
Q ss_pred HHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++++.. ++++..+.+.|+++.|++++++++.+..+..++.+|++|+.+++ ....+.+.|+++.|++++.++++
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCCh
Confidence 999975 56788999999999999999988777888999999999997433 45667788999999999887643
No 32
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=2e-18 Score=167.23 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHH
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~l 518 (617)
+.+.+..|+..|.+++.+.+++..+.+.||++.|+. +|.++++++++.|+++|+|++.+ +..+..+++.|++++|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999999999999999999999999 99999999999999999999975 4788999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccc
Q 007131 519 IFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (617)
|.. +.+..++++|+++|+|++.+. +....+.+.|+++.|+.++++++ .+++..|+++|.+|+...+ .....++
T Consensus 133 L~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~~~---~~~~~vv 206 (296)
T 1xqr_A 133 LDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHP---EHKGTLC 206 (296)
T ss_dssp HHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred Hcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCh---HHHHHHH
Confidence 973 346899999999999999765 45778889999999999999875 8999999999999998533 3567778
Q ss_pred ccCcHHHHHHHhcCCCCCCC
Q 007131 598 EAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 598 ~~g~~~~L~~ll~~~~~~vr 617 (617)
+.|+++.|+.+|.+++..||
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHH
T ss_pred HcCCHHHHHHHHcCCChhHH
Confidence 99999999999999887653
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=189.15 Aligned_cols=219 Identities=24% Similarity=0.238 Sum_probs=191.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh-hCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK-DGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
.++.|+.+|.++++.++..|+.+|.+|+...+ + +..+.. .|+++.|++.|.+. +++++..|+.+|.+|+.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~-------~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-H-------HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-h-------HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 35999999999999999999999999986543 2 134554 58999999999876 89999999999999999
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
+++++..+.+.|+++.|+++|++.++.++..|+++|.||+.. +..+..+.+.|+++.|+++|.. .+.+++..++.+
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~~~~~a~~~ 163 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDC 163 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 4677888889999999999964 577888999999
Q ss_pred HHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 537 LANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 537 L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
|++++. +++++..+.+.|+++.|++++++++.+.+++.|+.+|++|+.+++ .+..+++.|+++.|+.++.+++
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSC
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCC
Confidence 999996 667899999999999999999987667899999999999997433 4567778999999999887754
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.77 E-value=2.3e-18 Score=184.35 Aligned_cols=225 Identities=25% Similarity=0.284 Sum_probs=190.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~ 458 (617)
++.+++++.+++++++..|+++|.+|+...+++ +..+.+.|+++.|+++|.+. +++++..|+.+|++|+.+
T Consensus 268 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH-------HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 399999999999999999999999997654333 47888999999999999863 489999999999999985
Q ss_pred h----hhHHHHHHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcC----------
Q 007131 459 A----KVAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS---------- 523 (617)
Q Consensus 459 ~----~~~~~i~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~---------- 523 (617)
. ..+..+.+.|+++.|+++|.+++ +.+++.|+++|+|++.+++++..+.+.|+++.|+.+|....
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 420 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc
Confidence 2 25778899999999999999876 69999999999999999999999999999999999996410
Q ss_pred ---------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 524 ---------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 524 ---------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
....+++..++++|++|+...+++..+.+.|+++.|+.++.+++ +.++..|+++|.+++.+ .....
T Consensus 421 l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~----~~~~~ 495 (529)
T 1jdh_A 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQD----KEAAE 495 (529)
T ss_dssp -----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS----HHHHH
T ss_pred cCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcC----HHHHH
Confidence 01234555777888889988888899999999999999999885 89999999999999853 22466
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.+.|+++.|.+++.+++++||
T Consensus 496 ~i~~~~~~~~L~~l~~~~~~~v~ 518 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRNEGVA 518 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHH
T ss_pred HHHHcCChHHHHHHhcCCCHHHH
Confidence 77789999999999999887664
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=6.3e-18 Score=177.01 Aligned_cols=222 Identities=23% Similarity=0.226 Sum_probs=187.7
Q ss_pred Ch-HHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 380 GA-GLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i-~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
++ +.+++++.++ ++.++..|+++|.+++....++ ...+.+.|+++.|+++|++++++++..|+++|.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ-------TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 55 9999999887 8999999999999998654333 2567889999999999999999999999999999999
Q ss_pred c-hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 458 N-AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 458 ~-~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+ ++.+..+.+.|+++.|++++.+ .++++++.|+++|++++... ..+..+. .++++.|+.++. ++++.++..+
T Consensus 137 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~---~~~~~v~~~a 212 (450)
T 2jdq_A 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLF---VSDTDVLADA 212 (450)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTT---CCCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHc---cCCHHHHHHH
Confidence 5 5688889999999999999996 78999999999999999654 3333333 789999999995 5788999999
Q ss_pred HHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+++|.+++... +.+..+.+.|+++.|+.++.+++ +.++..|+++|.+++...+. ....+.+.|+++.|+.+++++
T Consensus 213 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~ 288 (450)
T 2jdq_A 213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDI---QTQVILNCSALQSLLHLLSSP 288 (450)
T ss_dssp HHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHH---HHHHHHTTTHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChH---HHHHHHHCccHHHHHHHHcCC
Confidence 99999999765 45677788899999999998775 89999999999999874332 344566789999999999987
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
++.+
T Consensus 289 ~~~v 292 (450)
T 2jdq_A 289 KESI 292 (450)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6544
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=184.39 Aligned_cols=219 Identities=23% Similarity=0.231 Sum_probs=191.2
Q ss_pred hHHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 381 AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 381 i~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
++.+++.|.+. +++++..|+.+|.+|+...+ .+..+.+.|+++.|+++|+++++.++..|+++|.+++.+
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--------GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--------HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--------hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 48999999764 89999999999999975532 236888999999999999999999999999999999986
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
++.+..+.+.|+++.|+++|++.++.++..++.+|++|+. +++++..+.+.|+++.|+.+|.. ...+.+++.++.+|
T Consensus 130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVL 207 (644)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc--CChHHHHHHHHHHH
Confidence 5678888899999999999999999999999999999996 67899999999999999999974 34678899999999
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+||+..++++..+++.|+++.|+.++.+++ ..++..|+++|.+|+...... .. ..|+++.|++++.++++++
T Consensus 208 ~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~----~~--~~~~i~~Lv~lL~~~d~~v 279 (644)
T 2z6h_A 208 KVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQ----EG--MEGLLGTLVQLLGSDDINV 279 (644)
T ss_dssp HHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTC----CS--CHHHHHHHHHHTTCSCHHH
T ss_pred HHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhh----hh--hhhHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999998875 899999999999999754331 11 3488999999999876544
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.75 E-value=9.9e-18 Score=175.52 Aligned_cols=222 Identities=19% Similarity=0.185 Sum_probs=185.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccC-CCcccCCchhHHHHHhh-CCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVIN-DENASIDCGRAEAVMKD-GGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~~-~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
++.+++.+.+++++++..|+..|+.+.... +... +.+.+. |+++.|+++|+++ ++.++..|+++|.+++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-------~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-------DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-------HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-------HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999976422 2111 456666 9999999999998 89999999999999998
Q ss_pred -chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 458 -~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
+++....+++.|+++.|+++|+++++++++.|+++|++++... +.+..+.+.|+++.|+.++. .+.+..++..|++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVW 172 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--SCCCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4567777888999999999999999999999999999999765 68888899999999999996 2467899999999
Q ss_pred HHHHhccCC-C-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 536 ALANLAADD-K-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 536 ~L~~l~~~~-~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+|++++... + .+..+. .++++.|++++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPND---KIQAVIDAGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSSHH---HHHHHHHTTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCCCcH---HHHHHHHcCcHHHHHHHHCCCc
Confidence 999999764 3 233333 689999999999875 89999999999999974322 3455667899999999998766
Q ss_pred CCC
Q 007131 614 EGV 616 (617)
Q Consensus 614 ~~v 616 (617)
..+
T Consensus 248 ~~v 250 (450)
T 2jdq_A 248 YKV 250 (450)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.75 E-value=4.3e-18 Score=189.15 Aligned_cols=225 Identities=24% Similarity=0.278 Sum_probs=192.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-C-HHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R-EGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~-~~~~~~a~~~L~~ls~~ 458 (617)
++.|++++++.+++++..|+++|.+|+...+.+ +..+.+.|+++.|+++|.+. + ++++..|+++|++|+..
T Consensus 401 i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~-------~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-------HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH-------HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 389999999999999999999999997654333 36788999999999999863 3 48999999999999974
Q ss_pred h-h---hHHHHHHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcC----------
Q 007131 459 A-K---VAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS---------- 523 (617)
Q Consensus 459 ~-~---~~~~i~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~---------- 523 (617)
. + .+..+...|+++.|+++|...+ +.+++.|+++|+||+..++++..+.+.|+++.|+++|....
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a 553 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence 3 2 3568889999999999999866 49999999999999999989999999999999999996410
Q ss_pred ---------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 524 ---------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 524 ---------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
...++++..++++|++|+....++..+.+.|+++.|+.++.+++ +.++..|+.+|.+|+.+ .....
T Consensus 554 l~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~----~~~~~ 628 (780)
T 2z6g_A 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQD----KEAAE 628 (780)
T ss_dssp ----CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTS----HHHHH
T ss_pred cccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC----HHHHH
Confidence 01256888999999999988888999999999999999999875 89999999999999863 22466
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.+.|+++.|+.++.+++++||
T Consensus 629 ~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHH
Confidence 77889999999999999887664
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=9.5e-18 Score=186.41 Aligned_cols=222 Identities=23% Similarity=0.228 Sum_probs=191.2
Q ss_pred HhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007131 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSW-REGLQSEAAKAIAN 454 (617)
Q Consensus 377 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 454 (617)
...+++.|+.+|.++++.+|..|+.+|.+|+...+. +..+. ..|+++.|+++|.++ +++++..|+.+|.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~--------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~ 219 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH--------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 333459999999999999999999999999754322 13455 358999999999876 89999999999999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
|+.+++++..+.+.|+|+.|+++|++.++.++..|+++|.||+.. ++.+..+.+.|+++.|+++|. +.+..++..+
T Consensus 220 Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~---~~~~~v~~~a 296 (780)
T 2z6g_A 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAIT 296 (780)
T ss_dssp HHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CCCHHHHHHH
T ss_pred HhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh---cCCHHHHHHH
Confidence 999999999999999999999999999999999999999999976 467777888999999999996 4678899999
Q ss_pred HHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+.+|++++. +++++..+.+.|+++.|++++++++.+..++.|+.+|++|+.+.. +...+++.|+++.|+.++.++
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~ 372 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDP 372 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCS
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCC
Confidence 999999996 467788999999999999999988767888899999999997432 456677899999999988775
Q ss_pred C
Q 007131 613 H 613 (617)
Q Consensus 613 ~ 613 (617)
+
T Consensus 373 ~ 373 (780)
T 2z6g_A 373 S 373 (780)
T ss_dssp C
T ss_pred c
Confidence 4
No 40
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7e-17 Score=162.06 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCceEEEecCCCCccH-HH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 103 MNLQKLRFRGAESADS-II--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
++|++|++++|..... .. ...+++|++|++++|. +++.....+.. +++|++|+++ +|..+++.++..+...++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~--~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLS--GCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECT--TCBSCCHHHHHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECC--CCCCCCHHHHHHHHhcCC
Confidence 4455555554443322 11 1144455555555443 44433333322 4555555553 243444444444444455
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCC-CCceEeecCCC-CCCHHH----HhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCL-NVDEVA----LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~-~L~~L~l~~~~-~~~~~~----l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+|++|++++|..+++.++..+...+| +|++|++++|. .+++.. +..+++|++|++++|..+++..+..+ ..++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~ 247 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN 247 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCC
Confidence 55555555544444444444444444 55555555543 233322 23445555555555433444333322 2345
Q ss_pred CCCeEEeccC-CCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 254 KLVGLDVSRT-DVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 254 ~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
+|++|++++| .+++..+. .+..+++|+.|++++|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 5555555554 23333321 1233555555555554
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=2.1e-16 Score=171.72 Aligned_cols=212 Identities=18% Similarity=0.201 Sum_probs=145.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEec--------cCCCCCCHHHHHHHHhcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSG--------DYCRKITDATLSVIVARH 150 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l--------~~~~~~~~~~l~~i~~~~ 150 (617)
+.++++...++...+..+...+++|++|++.+|....... ...+++|++|++ ..|..+++.++..+...|
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 4556655556666666666777777777777772211111 225777777777 334557777777777777
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeecc-----CccCCc----HHHHHHHHhcCCCCceEeecCCCCCCHH
Q 007131 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLS-----GIRDIC----GDAINALAKLCPNLTDIGFLDCLNVDEV 221 (617)
Q Consensus 151 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~-----~~~~i~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 221 (617)
++|+.|.++ |..+++.++..++..|++|++|+++ +|..++ +.++..+...+++|++|++++ .+++.
T Consensus 372 ~~L~~L~~~---~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 372 PKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp TTCCEEEEE---ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred hhHHHHHHh---cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 777777663 6677777777777677777777777 455666 667777777777788777766 46665
Q ss_pred HH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 222 AL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 222 ~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
++ ..+++|++|++++| .+++.++..+..+|++|+.|++++|.+++.++..++..+++|+.|++++|+. ++.+..
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~ 524 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACK 524 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHH
T ss_pred HHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHH
Confidence 44 23677788888776 4677777777677778888888777777777766666777788888887775 555544
Q ss_pred HH
Q 007131 298 SA 299 (617)
Q Consensus 298 ~~ 299 (617)
.+
T Consensus 525 ~l 526 (594)
T 2p1m_B 525 LL 526 (594)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.2e-16 Score=173.39 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccC---ccCCcH----HHHHHHHhcCCCC
Q 007131 135 CRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSG---IRDICG----DAINALAKLCPNL 207 (617)
Q Consensus 135 ~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~---~~~i~~----~~l~~l~~~~~~L 207 (617)
|..+++.++..+...|++|++|+++ |..+++.++..++..|++|++|++++ |..+++ +++..+...|++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~---~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY---VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE---ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred cCccCHHHHHHHHhhCccCeEEEee---cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 4444444444444444445555442 34444444444444444455544431 223332 2344444444445
Q ss_pred ceEeecCCC-CCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 208 TDIGFLDCL-NVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 208 ~~L~l~~~~-~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
++|++++|. .+++.++ ..+++|++|++++| .+++.++..+..+|++|++|++++|.+++.++..++..+++|++
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 555544332 1333322 22444555555443 34444444444444555555555544444444444444455555
Q ss_pred EEccCCC
Q 007131 283 LCALNCP 289 (617)
Q Consensus 283 L~l~~c~ 289 (617)
|++++|.
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 5555444
No 43
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-17 Score=177.12 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=175.9
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHH---HHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG---LQSEAAKA 451 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~---~~~~a~~~ 451 (617)
+.++|+ +.|+.++.++++.++..|+++|.+|+.. . ..|..+++.|+++.|+.+|.+.... .+..|+.+
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~-------~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-K-------NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-G-------GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-H-------HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 356777 9999999999999999999999999643 3 3357899999999999999887544 89999999
Q ss_pred HHHhccchhhHHHHHH---hCCHHHHHHHHhc-CC------------H-HHHHHHHHHHHHhcCCc-----chHHHHHhc
Q 007131 452 IANLSVNAKVAKAVAE---EGGINILAVLARS-MN------------R-LVAEEAAGGLWNLSVGE-----EHKGAIADA 509 (617)
Q Consensus 452 L~~ls~~~~~~~~i~~---~~~i~~L~~lL~~-~~------------~-~~~~~a~~~L~nL~~~~-----~~~~~i~~~ 509 (617)
|++|+...+....+.. .|+|++|+++|.. +. + --+..|+.||.|||..+ +.|..|++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9999975544443421 3789999999972 11 1 12678999999999876 358888885
Q ss_pred -CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch-HHHHH------hCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 510 -GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS-MEVAL------AGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 510 -g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
|+++.|..+|. +++..++++|+++++||+.+++.. ..+.+ .+.++.|+.++.+++ .+++.+|+++|+|
T Consensus 605 ~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAn 680 (778)
T 3opb_A 605 KVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 99999999995 578899999999999999877764 34432 224788999998875 8999999999999
Q ss_pred HhccCCCCCCcccccccc-CcHHHHHHHhcC--CCCC
Q 007131 582 LAAHGDSNSNNSAVGQEA-GALEALVQLTRS--PHEG 615 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~-g~~~~L~~ll~~--~~~~ 615 (617)
++...+ .....+++. ++++.+++++++ ++++
T Consensus 681 Lts~~~---~ia~~ll~~~~gi~~Ll~lL~~~~~~~~ 714 (778)
T 3opb_A 681 IATTIP---LIAKELLTKKELIENAIQVFADQIDDIE 714 (778)
T ss_dssp HHHHCH---HHHHHHTTCHHHHHHHHHHHHHTTTCHH
T ss_pred hcCCCh---HHHHHHHHccccHHHHHHHHhccCCCHH
Confidence 975322 244555555 899999999998 4443
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.1e-16 Score=166.44 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=181.8
Q ss_pred HhcCh-HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCccc------------------CC-------------chhHHH
Q 007131 377 LKQGA-GLLLSLMQS-TQEDVQERAATGLATFVVINDENAS------------------ID-------------CGRAEA 423 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~------------------~~-------------~~~~~~ 423 (617)
...++ +.|+++++. ++..+..-++.+|.||+...+.... .+ ++++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 44453 889999984 6778889999999999875543111 00 114567
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHH---HHHHHHHHHHHhcCCc
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRL---VAEEAAGGLWNLSVGE 500 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nL~~~~ 500 (617)
+.+.|+++.|+.++++.++.+++.|+++|.+|+.++++|..+++.||++.|+.+|.+..+. +++.|+.+|.+|+...
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999887554 8999999999998665
Q ss_pred chHHHHHh---cCChHHHHHHHhhcCCC----------CH-HHHHHHHHHHHHhccCCC-----chHHHHHh-CCHHHHH
Q 007131 501 EHKGAIAD---AGGVKALVDLIFKWSSG----------GD-GVLERAAGALANLAADDK-----CSMEVALA-GGVHALV 560 (617)
Q Consensus 501 ~~~~~i~~---~g~i~~L~~ll~~~~~~----------~~-~~~~~a~~~L~~l~~~~~-----~~~~i~~~-~~~~~L~ 560 (617)
+....+.. .|++++|+.+|...+.. .+ .-+..|+.+|.|||..++ .|..|+++ |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 55554422 48999999999620111 11 237799999999998763 37778885 9999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccccc------CcHHHHHHHhcCCCCCC
Q 007131 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA------GALEALVQLTRSPHEGV 616 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~------g~~~~L~~ll~~~~~~v 616 (617)
.++.+++ +.++.+|+++++||+.++++ ....+.+. +.++.|+.++++++.++
T Consensus 613 ~LL~s~n-~~VrrAA~elI~NL~~~~e~---i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~ 670 (778)
T 3opb_A 613 NLMLDEN-VPLQRSTLELISNMMSHPLT---IAAKFFNLENPQSLRNFNILVKLLQLSDVES 670 (778)
T ss_dssp HGGGCSS-HHHHHHHHHHHHHHHTSGGG---TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHhCCC-HHHHHHHHHHHHHHhCCcHH---HHHHHHhhcCchhhccHHHHHHHHcCCCHHH
Confidence 9998874 89999999999999985543 11122221 24889999998876554
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.3e-13 Score=140.92 Aligned_cols=108 Identities=10% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCCCeeeccCccCCcHHHHHH---HHhcCCCCceEeecCCCCCCHH--------HHhcCcCCCeecccCCCCCCHHHHHH
Q 007131 179 PKLKKLRLSGIRDICGDAINA---LAKLCPNLTDIGFLDCLNVDEV--------ALGNVLSVRFLSVAGTSNMKWGVVSQ 247 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~--------~l~~~~~L~~L~l~~~~~i~~~~l~~ 247 (617)
++|++|++++| .+++.++.. ....+++|++|++++| .+++. .+..+++|++|++++| .+++.+...
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHH
Confidence 45555555544 343333332 2223445555555554 34432 1234445555555544 344333222
Q ss_pred H---HhcCCCCCeEEeccCCCCHHHHH---HHHhc--CCCCCEEEccCCC
Q 007131 248 V---WHKLPKLVGLDVSRTDVGPITIS---RLLTS--SKSLKVLCALNCP 289 (617)
Q Consensus 248 l---~~~~~~L~~L~l~~~~~~~~~l~---~~~~~--~~~L~~L~l~~c~ 289 (617)
+ ...+++|++|++++|.+++.+.. ..+.. +++|+.|++++|.
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 2 23444555555555544443222 22211 4455555555544
No 46
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.2e-13 Score=137.99 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=101.2
Q ss_pred hCCCceEEEecCCCCcc----HHHH--hcCCCccEEeccCCCCCCHHHHHHHH---hcC---------CCcceEEEcCCC
Q 007131 101 RCMNLQKLRFRGAESAD----SIIH--LQARNLRELSGDYCRKITDATLSVIV---ARH---------EALESLQLGPDF 162 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~----~~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~---~~~---------~~L~~L~l~~~~ 162 (617)
.+++|++|+|+++.+.. .+.. ..+++|++|+|++|. +++.+...+. ..+ ++|++|+++ +
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--~ 168 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--R 168 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC--S
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC--C
Confidence 45666666666665543 1111 256666666666665 4443332222 222 666666664 2
Q ss_pred CCCCCHHHHHHHH---hcCCCCCeeeccCccCCcHHHHHHHHh----cCCCCceEeecCCCCCCHH-------HHhcCcC
Q 007131 163 CERITSDAVKAIA---LCCPKLKKLRLSGIRDICGDAINALAK----LCPNLTDIGFLDCLNVDEV-------ALGNVLS 228 (617)
Q Consensus 163 ~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~-------~l~~~~~ 228 (617)
| .+++.++..++ ..+++|++|++++| .+++.++..+.. .+++|++|++++| .+++. .+..+++
T Consensus 169 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 169 N-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp S-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTT
T ss_pred C-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCC
Confidence 3 45544444322 24566666666666 566555444332 5566666666666 35432 2345666
Q ss_pred CCeecccCCCCCCHHHHHHHHhc-----CCCCCeEEeccCCCCHHH---HHHHH-hcCCCCCEEEccCCCCCChh
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHK-----LPKLVGLDVSRTDVGPIT---ISRLL-TSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~-----~~~L~~L~l~~~~~~~~~---l~~~~-~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++|++++| .+++.+...+... +++|++|++++|.++..+ ++..+ .++++|++|++++|++....
T Consensus 246 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666665 4555554443321 566666666666666532 22222 44666666666666644333
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=2e-13 Score=143.22 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=107.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHH----H--HhcCCCccEEeccCCCCCCHHHHHHHHhcCC---
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI----I--HLQARNLRELSGDYCRKITDATLSVIVARHE--- 151 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~----~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~--- 151 (617)
+.++++...++...+..+...+++|++|++++|...... . ...+++|++|+++++. +++.+...+...++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTT
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCC
Confidence 445555555555555555555666666666666544321 1 1145666666666654 55555555555554
Q ss_pred -CcceEEEcCCCCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHHhc----CCCCceEeecCCCCCCHH--
Q 007131 152 -ALESLQLGPDFCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALAKL----CPNLTDIGFLDCLNVDEV-- 221 (617)
Q Consensus 152 -~L~~L~l~~~~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~-- 221 (617)
+|++|+++ +| .+++.+.. .....+++|++|+++++ .+++.++..+... .++|++|++++| .+++.
T Consensus 85 ~~L~~L~L~--~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 85 CKIQKLSLQ--NC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CCCCEEECT--TS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred CceeEEEcc--CC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 46666664 23 45543322 22234566666666666 4555555444432 335666666666 34432
Q ss_pred -----HHhcCcCCCeecccCCCCCCHHHHHHHHh----cCCCCCeEEeccCCCCHHH---HHHHHhcCCCCCEEEccCCC
Q 007131 222 -----ALGNVLSVRFLSVAGTSNMKWGVVSQVWH----KLPKLVGLDVSRTDVGPIT---ISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 222 -----~l~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~c~ 289 (617)
.+..+++|++|++++| .+++.++..+.. ..++|++|++++|.++... +...+..+++|++|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 2344566666666665 355555444433 2346666666665554432 34444455666666666654
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=8.3e-13 Score=138.46 Aligned_cols=208 Identities=20% Similarity=0.254 Sum_probs=141.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHhCC----CceEEEecCCCCccH----HHH--hcCCCccEEeccCCCCCCHHHHHHHHhc
Q 007131 80 WSSLDLRAHKCDIAMAASLASRCM----NLQKLRFRGAESADS----IIH--LQARNLRELSGDYCRKITDATLSVIVAR 149 (617)
Q Consensus 80 w~~l~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~~~ 149 (617)
.+.+++++..+.+.....+...++ +|++|++++|...+. +.. ..+++|++|+++++. +++.+...+...
T Consensus 58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~ 136 (461)
T 1z7x_W 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEG 136 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHH
T ss_pred cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHH
Confidence 467777777777766666666665 688888888876532 121 267788888888876 777666655543
Q ss_pred ----CCCcceEEEcCCCCCCCCHHHHHHH---HhcCCCCCeeeccCccCCcHHHHHHHHh----cCCCCceEeecCCCCC
Q 007131 150 ----HEALESLQLGPDFCERITSDAVKAI---ALCCPKLKKLRLSGIRDICGDAINALAK----LCPNLTDIGFLDCLNV 218 (617)
Q Consensus 150 ----~~~L~~L~l~~~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~ 218 (617)
.++|++|+++ +| .+++.+...+ ...+++|++|+++++ .+++.+...+.. ..++|++|++++| .+
T Consensus 137 l~~~~~~L~~L~L~--~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l 211 (461)
T 1z7x_W 137 LLDPQCRLEKLQLE--YC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GV 211 (461)
T ss_dssp HTSTTCCCCEEECT--TS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CC
T ss_pred HhcCCCcceEEECC--CC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CC
Confidence 4568888885 35 6666543332 344788888888887 577766665554 3458888888888 45
Q ss_pred CHH-------HHhcCcCCCeecccCCCCCCHHHHHHHHh----cCCCCCeEEeccCCCCHHH---HHHHHhcCCCCCEEE
Q 007131 219 DEV-------ALGNVLSVRFLSVAGTSNMKWGVVSQVWH----KLPKLVGLDVSRTDVGPIT---ISRLLTSSKSLKVLC 284 (617)
Q Consensus 219 ~~~-------~l~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~ 284 (617)
++. .+..+++|++|++++| .+++.++..+.. .+++|++|++++|.++..+ +...+..+++|++|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 542 3456788888888887 677766655543 4778888888888877765 455556688888888
Q ss_pred ccCCCCCChhH
Q 007131 285 ALNCPVLEEEN 295 (617)
Q Consensus 285 l~~c~~~~~~~ 295 (617)
+++|. +++.+
T Consensus 291 Ls~n~-i~~~~ 300 (461)
T 1z7x_W 291 LAGNE-LGDEG 300 (461)
T ss_dssp CTTCC-CHHHH
T ss_pred CCCCC-CchHH
Confidence 88875 44443
No 49
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=5e-12 Score=127.44 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh----cCCCCCeeeccCccCCcHHHHHHH
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL----CCPKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~l~~l 200 (617)
++|++|+|++|. +++.++..+...+++|+.|+|+ +| .+++.+...++. .+++|++|+|++| .+++.+...+
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls--~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQ--LN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECC--SS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcC--CC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence 455555555554 5555555444444455555553 23 455544444332 2345555555555 4544443333
Q ss_pred H---hcCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCCCCCHHHHHHHHh---cCCCCCeEEeccCCCCH
Q 007131 201 A---KLCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMKWGVVSQVWH---KLPKLVGLDVSRTDVGP 267 (617)
Q Consensus 201 ~---~~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~ 267 (617)
. ..+++|++|++++| .+++.+ +..+++|++|++++| .+++.+...+.. .+++|++|++++|.+++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2 23445555555555 344432 123344555555444 344444333322 33445555555544444
Q ss_pred HHHH
Q 007131 268 ITIS 271 (617)
Q Consensus 268 ~~l~ 271 (617)
.+..
T Consensus 254 ~g~~ 257 (372)
T 3un9_A 254 EGRQ 257 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 50
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=8.2e-12 Score=125.88 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=137.3
Q ss_pred HHhcCCCccEEeccCCCCCCHHHHHHHHh----cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHH
Q 007131 120 IHLQARNLRELSGDYCRKITDATLSVIVA----RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGD 195 (617)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~----~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~ 195 (617)
.....++|++|++++|. +++.....+.. .+++|++|+|+ +| .+++.++..++..+++|++|+|++| .+++.
T Consensus 67 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~ 141 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLA--SC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPE 141 (372)
T ss_dssp HHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECT--TC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHH
T ss_pred HHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEec--CC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHH
Confidence 33456789999999987 88776555544 24699999996 35 7999999988888889999999999 89998
Q ss_pred HHHHHHh----cCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEec
Q 007131 196 AINALAK----LCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVS 261 (617)
Q Consensus 196 ~l~~l~~----~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~ 261 (617)
+...+.. .+++|++|++++| .+++.+ +..+++|++|++++| .+++.++..+. ..+++|++|+++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 8777653 3589999999999 687744 356899999999998 68888876665 567899999999
Q ss_pred cCCCCHHHHHH---HHhcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 262 RTDVGPITISR---LLTSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 262 ~~~~~~~~l~~---~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
+|.+++.+... .+..+++|++|++++|+ +++.+...+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 99999875544 45567999999999997 6666655443
No 51
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.34 E-value=8.6e-13 Score=115.45 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc---CCCCCeeeccCccCCcHHHHHHHH
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC---CPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..|++|++++|. ++|.++..+ ..|++|++|+|+ +|..++|.++..++.. |++|++|+|++|..+|+.++..+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~--~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLC--KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEE--SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeC--CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777777776 777776665 357777777774 4777777777777652 456777777777667777776665
Q ss_pred hcCCCCceEeecCCCCCCHHH
Q 007131 202 KLCPNLTDIGFLDCLNVDEVA 222 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~ 222 (617)
.|++|++|++++|+.+++.+
T Consensus 137 -~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -GCTTCCEEEEESCTTCCCHH
T ss_pred -cCCCCCEEECCCCCCCCchH
Confidence 35777777777776666654
No 52
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.33 E-value=1.1e-12 Score=114.77 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=54.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhc---CCCCceEeecCCCCCCHHHH---hc
Q 007131 152 ALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKL---CPNLTDIGFLDCLNVDEVAL---GN 225 (617)
Q Consensus 152 ~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~l---~~ 225 (617)
+|+.|+++ +|. +++.++..+. .|++|++|+|++|..++|.++..+... +++|++|++++|..+||.++ ..
T Consensus 62 ~L~~LDLs--~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDAT--DSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEE--SCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCc--CCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 45666664 353 5555555553 456666666666655666666555542 34566666666655666544 34
Q ss_pred CcCCCeecccCCCCCCHHHH--HHHHhcCCCCC
Q 007131 226 VLSVRFLSVAGTSNMKWGVV--SQVWHKLPKLV 256 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l--~~l~~~~~~L~ 256 (617)
+++|++|++++|+.+++.++ ..+-..+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 55566666666655655442 33334555543
No 53
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=1.2e-11 Score=124.92 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCccEEeccCCCCCCH---HHHHHHHhcC-CCcceEEEcCCCCCCCCHHHHHHHHh---c-CCCCCeeeccCccCCcHHH
Q 007131 125 RNLRELSGDYCRKITD---ATLSVIVARH-EALESLQLGPDFCERITSDAVKAIAL---C-CPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~---~~l~~i~~~~-~~L~~L~l~~~~~~~i~~~~l~~l~~---~-~~~L~~L~l~~~~~i~~~~ 196 (617)
++|++|++++|. +++ ..+......+ ++|++|+++ +| .+++.+...++. . +++|++|++++| .+++.+
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 154 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLG--WN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS 154 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECC--SS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECc--CC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH
Confidence 556666665554 322 2233333333 456666663 23 344333333222 1 345666666655 444333
Q ss_pred HHHHH---hcCC-CCceEeecCCCCCCHH-------HHhcC-cCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEe
Q 007131 197 INALA---KLCP-NLTDIGFLDCLNVDEV-------ALGNV-LSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDV 260 (617)
Q Consensus 197 l~~l~---~~~~-~L~~L~l~~~~~~~~~-------~l~~~-~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l 260 (617)
...+. ...+ +|++|++++| .+++. .+..+ ++|++|++++| .+++.+...+. ..+++|++|++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEEC
Confidence 22221 2223 5666666655 33321 12333 35666666555 34332222221 12345666666
Q ss_pred ccCCCCH---HHHHHHHhcCCCCCEEEccCCC
Q 007131 261 SRTDVGP---ITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 261 ~~~~~~~---~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|.+++ ..+..++..+++|+.|++++|.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 6654433 3334444455556666665553
No 54
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=4.9e-11 Score=120.47 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=132.6
Q ss_pred HHHHHHhCCCceEEEecCCCCccHHH------HhcCC-CccEEeccCCCCCCHH---HHHHHHhcC-CCcceEEEcCCCC
Q 007131 95 AASLASRCMNLQKLRFRGAESADSII------HLQAR-NLRELSGDYCRKITDA---TLSVIVARH-EALESLQLGPDFC 163 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~---~l~~i~~~~-~~L~~L~l~~~~~ 163 (617)
...+....++|++|++++|....... ...++ +|++|++++|. +++. .+..+...+ ++|++|+|+ +|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls--~n 90 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLS--GN 90 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECC--SS
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECc--CC
Confidence 33445555679999999997654321 12566 89999999986 5543 345544444 899999996 35
Q ss_pred CCCCHHHHH---HHHhcC-CCCCeeeccCccCCcHHHHHHHHh---c-CCCCceEeecCCCCCCHHH-------HhcCc-
Q 007131 164 ERITSDAVK---AIALCC-PKLKKLRLSGIRDICGDAINALAK---L-CPNLTDIGFLDCLNVDEVA-------LGNVL- 227 (617)
Q Consensus 164 ~~i~~~~l~---~l~~~~-~~L~~L~l~~~~~i~~~~l~~l~~---~-~~~L~~L~l~~~~~~~~~~-------l~~~~- 227 (617)
.+++.+.. .....+ ++|++|++++| .+++.+...+.. . +++|++|++++| .+++.+ +..++
T Consensus 91 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 91 -FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp -CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCT
T ss_pred -cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCc
Confidence 56544333 333345 89999999999 676655544443 3 469999999999 676532 34555
Q ss_pred CCCeecccCCCCCCHH---HHHHHHhcC-CCCCeEEeccCCCCH---HHHHHHHhc-CCCCCEEEccCCCCCCh
Q 007131 228 SVRFLSVAGTSNMKWG---VVSQVWHKL-PKLVGLDVSRTDVGP---ITISRLLTS-SKSLKVLCALNCPVLEE 293 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~---~l~~l~~~~-~~L~~L~l~~~~~~~---~~l~~~~~~-~~~L~~L~l~~c~~~~~ 293 (617)
+|++|++++| .+++. .+......+ ++|++|++++|.+++ ..+...+.. .++|+.|++++|.+...
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 9999999998 45443 344444556 499999999987655 445555554 56999999999975443
No 55
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.17 E-value=3.7e-10 Score=117.01 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=179.3
Q ss_pred hHHHHhcChHHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCccc-------CC---chhHHHH-HhhCCHHHHHHHHhc
Q 007131 373 DDFWLKQGAGLLLSLMQS--TQEDVQERAATGLATFVVINDENAS-------ID---CGRAEAV-MKDGGIRLLLDLAKS 439 (617)
Q Consensus 373 ~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~-------~~---~~~~~~i-~~~~~i~~Lv~lL~~ 439 (617)
+..++..|++.++..|+. ++.++...++.+|.++....+.... .+ ....+.+ .+.+.++.|+.+|++
T Consensus 54 ~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~ 133 (651)
T 3grl_A 54 RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE 133 (651)
T ss_dssp TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC
T ss_pred HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC
Confidence 333578888999999965 5788888999999887554332100 00 0112222 467899999999999
Q ss_pred CCHHHHHHHHHHHHHhccch-h-hHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHH
Q 007131 440 WREGLQSEAAKAIANLSVNA-K-VAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKAL 515 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~-~-~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L 515 (617)
.+..+|..++..|..|+.+. + .++.|.. .+||+.|+.+|.+..+.++..|+..|.+|+.+....++++. +|+++.|
T Consensus 134 ~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L 213 (651)
T 3grl_A 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL 213 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence 99999999999999999843 3 6777775 58999999999999999999999999999987766555555 7999999
Q ss_pred HHHHhh-cCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCch-----hHHHH---HHHHHHHHhcc
Q 007131 516 VDLIFK-WSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFE-----GVQEQ---AARALANLAAH 585 (617)
Q Consensus 516 ~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~-----~~~~~---a~~~L~~l~~~ 585 (617)
+.++.. +......++..++.++.||...+. ++..+.+.|+++.|..++..+++. ....+ +..++.-+...
T Consensus 214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 999976 222234688999999999997654 788899999999999998754321 23333 66677777763
Q ss_pred CCC---CCCccccccccCcHHHHHHHhcCC
Q 007131 586 GDS---NSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 586 ~~~---~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+.. ...+...+.+.|+++.|++++.++
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 221 223455677899999999988764
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=7.1e-11 Score=118.66 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=85.1
Q ss_pred HHhCCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHH------
Q 007131 99 ASRCMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAV------ 171 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l------ 171 (617)
...+++|++|++++|....... ...+++|++|++++|. +++... ...+++|+.|+++ +| .+++...
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~--~n-~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLN--YN-QIEDISPLASLTS 200 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECT--TS-CCCCCGGGGGCTT
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEcc--CC-cccccccccCCCc
Confidence 3455677777777664332211 2255666666666554 221111 3345555555553 22 2221110
Q ss_pred --------------HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCC
Q 007131 172 --------------KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 172 --------------~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 237 (617)
.. ...+++|++|++++| .++... . ...+++|++|++++|...+...+..+++|++|++++|
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLS--P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCc--c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 00 223455555555555 332211 1 3345566666666653222234555666666666665
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 238 ~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+++. .....+++|+.|++++|.++... +..+..+++|+.|++++|++..
T Consensus 276 -~l~~~---~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 276 -QISDI---SVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp -CCCCC---GGGGGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSSCCC
T ss_pred -ccCCC---hhhcCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCcccc
Confidence 33321 12345666666666666555433 2334456666666666665443
No 57
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.11 E-value=4.7e-11 Score=82.53 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccC
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~ 84 (617)
...|..||+|++.+||+||+.+|+.+++.|||+|+.+..++.+|+.+|
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 456999999999999999999999999999999999999999999875
No 58
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=1.3e-10 Score=116.62 Aligned_cols=170 Identities=20% Similarity=0.143 Sum_probs=115.1
Q ss_pred hCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.+++|++|++++|..........+++|+.|+++++. +++... ...+++|++|+++ +| .+++... ...+++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~--~n-~l~~~~~---~~~l~~ 244 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIG--NN-KITDLSP---LANLSQ 244 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECC--SS-CCCCCGG---GTTCTT
T ss_pred cCCCCCEEEccCCcccccccccCCCccceeecccCC-CCCCch---hhcCCcCCEEEcc--CC-ccCCCcc---hhcCCC
Confidence 345555555555543322222355666666666654 322111 4568899999996 34 4443221 456899
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|++|+++++ .++.- . ....+++|++|++++|. +++ ..+..+++|++|++++| .++..... ....+++|++|+
T Consensus 245 L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~ 317 (347)
T 4fmz_A 245 LTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNN-QLGNEDME-VIGGLTNLTTLF 317 (347)
T ss_dssp CCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCGGGHH-HHHTCTTCSEEE
T ss_pred CCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCC-cCCCcChh-HhhccccCCEEE
Confidence 999999998 55542 2 24567999999999994 444 56788999999999998 56554433 345799999999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
+++|.++... + +..+++|+.|++++|++
T Consensus 318 L~~n~l~~~~-~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNHITDIR-P--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSSCCCCG-G--GGGCTTCSEESSSCC--
T ss_pred ccCCcccccc-C--hhhhhccceeehhhhcc
Confidence 9999876543 1 56799999999999975
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=4.7e-11 Score=109.22 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|++|+++++....-.....+++|++|++++|. +++. . ....+++|++|++++ + .+++.....+. .+++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~--~-~l~~l~~L~~L~l~~--n-~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNY--N-PISGLSNLERLRIMG--K-DVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCC--G-GGTTCTTCCEEEEEC--T-TCBGGGSCCCT-TCTTC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcc--h-hhhcCCCCCEEEeEC--C-ccCcccChhhc-CCCCC
Confidence 35678888877755431122256677777777763 4332 1 233466777777752 3 44432222222 35666
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .+++.....+. .+++|++|++++|..+++ ..+..+++|++|++++| .+++- . ....+++|++|++
T Consensus 115 ~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~~--~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDY--R-GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCCC--T-TGGGCSSCCEEEE
T ss_pred CEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcCh--H-HhccCCCCCEEEe
Confidence 66666666 45543333332 456666666666642333 34455566666666555 23221 1 1234555555555
Q ss_pred ccCCC
Q 007131 261 SRTDV 265 (617)
Q Consensus 261 ~~~~~ 265 (617)
++|.+
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 55543
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.07 E-value=1.6e-09 Score=100.25 Aligned_cols=169 Identities=19% Similarity=0.158 Sum_probs=117.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..|+++++.++..|+..|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 78888888888999999988888642 13467788888888888888888888877642
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.++++.|+++|.++++.++..|+.+|..+.. .+.++.|+.++. +.++.++..|+.+|..+.
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcC
Confidence 3456777777777777888888888777743 246677777773 466777777777777763
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
. ...++.|..++.+++ +.++..|+.+|..+.. ..+++.|..+++++++.|
T Consensus 141 ~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHH
Confidence 2 235666667666553 6777777777777631 234566666666555443
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.05 E-value=2e-09 Score=98.63 Aligned_cols=169 Identities=19% Similarity=0.156 Sum_probs=135.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++++|.++++.++..|+.+|..+. ..+.++.|+++|.++++.++..|+.+|..+..
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 78999999999999999999998652 13467899999998899999999999987642
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.++. +.++.++..|+.+|..+.
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 2468888999999999999999999998753 247888888884 578889999999998874
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
. ...++.|..++.+++ ..++..|+.+|..+. ...+++.|..+++++++.|
T Consensus 136 ~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~v 185 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFA 185 (201)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHH
Confidence 2 356788888888764 789999999999883 1235777777777666544
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=7.6e-11 Score=114.97 Aligned_cols=170 Identities=20% Similarity=0.160 Sum_probs=123.4
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|+.|+++++..........+++|++|+++++. +++.. . ...+++|+.|+++ ++ .+++ +.. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~--~n-~l~~--~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLD--EN-KVKD--LSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECC--SS-CCCC--GGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECC--CC-cCCC--Chh-hccCCCC
Confidence 46789999998865432223368999999999886 44321 1 5678999999996 34 4554 223 3458999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. ...+++|++|++++|..-.-..+..+++|++|++++| .+++.. . ...+++|++|+++
T Consensus 115 ~~L~L~~n-~i~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 115 KSLSLEHN-GISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLS 186 (291)
T ss_dssp CEEECTTS-CCCC--CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECC
T ss_pred CEEECCCC-cCCC--Chh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCC-ccccch--h-hcCCCccCEEECC
Confidence 99999998 5554 222 3467999999999984333366788999999999998 444322 1 5679999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|.++.- +. +..+++|+.|++++|++..
T Consensus 187 ~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 187 KNHISDL--RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence 9887653 22 5679999999999987544
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=2.1e-10 Score=112.91 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=108.5
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++|++|++++|..........+++|++|+++++. +++. . ....+++|+.|+++ +| .+++. .. ...++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~--~n-~l~~~--~~-l~~l~ 129 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLT--ST-QITDV--TP-LAGLS 129 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECT--TS-CCCCC--GG-GTTCT
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECC--CC-CCCCc--hh-hcCCC
Confidence 4567888888887755432223467788888888776 4332 1 24457788888885 23 44431 22 34577
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
+|++|+++++ .++.- .. ...+++|++|++++| .+++ ..+..+++|++|++++| .+++.. . ...+++|++|
T Consensus 130 ~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L 200 (308)
T 1h6u_A 130 NLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDIS--P-LASLPNLIEV 200 (308)
T ss_dssp TCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEE
T ss_pred CCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCC-ccCcCh--h-hcCCCCCCEE
Confidence 8888888877 44331 11 346678888888887 3443 34677788888888876 333211 1 4567888888
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++++|.++... . +..+++|+.|++++|++..
T Consensus 201 ~L~~N~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 201 HLKNNQISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECTTSCCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred EccCCccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 88887765432 1 4668888888888877543
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.03 E-value=9e-12 Score=123.86 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=35.3
Q ss_pred cCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 280 (617)
.+++|++|++++|. ++. ..+..+++|++|++++|...+. +......+++|++|++++|..... ++..+.++++|
T Consensus 204 ~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L 279 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279 (328)
T ss_dssp GCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTC
T ss_pred CCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCC
Confidence 34455555555442 221 2244445555555555422211 011123345555555555432211 12223345555
Q ss_pred CEEEccCCCCCC
Q 007131 281 KVLCALNCPVLE 292 (617)
Q Consensus 281 ~~L~l~~c~~~~ 292 (617)
++|++++|+.++
T Consensus 280 ~~L~L~~n~~~~ 291 (328)
T 4fcg_A 280 EKLDLRGCVNLS 291 (328)
T ss_dssp CEEECTTCTTCC
T ss_pred CEEeCCCCCchh
Confidence 555555554443
No 65
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.03 E-value=1.7e-09 Score=112.14 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=172.3
Q ss_pred cChHHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHh
Q 007131 379 QGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANL 455 (617)
Q Consensus 379 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l 455 (617)
..|+.|++-+. +.-.+-|+.|+..|..+++.. +.-+..++++.|+..|+.. |.++...+..+|.++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----------~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----------RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----------TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----------HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33477777774 456777999999999986322 2345688899999999875 788888899999887
Q ss_pred ccchh------------------hHHHHH-HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHHHHHh-cCChH
Q 007131 456 SVNAK------------------VAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIAD-AGGVK 513 (617)
Q Consensus 456 s~~~~------------------~~~~i~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~~i~~-~g~i~ 513 (617)
...++ ..+.+. +.++|+.|+.+|++.+-.++.+++..|..|+... .++..|.. .+|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 65221 122333 4567999999999999999999999999998544 37888885 69999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
.|+.+|. +..+.++-.|+..|.+|+.++....+++. +|+++.|+.+++... ...+.+.+..+|.||...+..
T Consensus 170 ~Lv~lL~---d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s- 245 (651)
T 3grl_A 170 RLMDLLA---DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS- 245 (651)
T ss_dssp HHHGGGG---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHh---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH-
Confidence 9999995 46788999999999999998887666655 499999999997532 247889999999999985433
Q ss_pred CCccccccccCcHHHHHHHhcCCC
Q 007131 590 SNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+...+.|.|+++.|..++..+.
T Consensus 246 --NQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 246 --NQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp --HHHHHHHTTCGGGGGGGGCCCS
T ss_pred --HHHHHHHcCCHHHHHHHhCCCc
Confidence 6778889999999999987643
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.02 E-value=1.9e-10 Score=113.23 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=126.9
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|++|+++++..........+++|++|+++++. +++..- ...+++|+.|++++ + .+++. .. ...+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~--n-~l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSG--N-PLKNV--SA-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCS--C-CCSCC--GG-GTTCTTC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccC--C-cCCCc--hh-hcCCCCC
Confidence 46899999999865432222368999999999986 544222 56799999999963 4 45442 22 3458999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. ...+++|++|++++|..-....+..+++|++|++++| .+++. .. ...+++|++|+++
T Consensus 110 ~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 110 KTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDL--TP-LANLSKLTTLKAD 181 (308)
T ss_dssp CEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECC
T ss_pred CEEECCCC-CCCC--chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC-cCCCC--hh-hcCCCCCCEEECC
Confidence 99999998 5554 222 4578999999999994333345889999999999998 45432 12 5679999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|.++... . +..+++|+.|++++|.+....
T Consensus 182 ~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 182 DNKISDIS--P-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCG--G-GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCh--h-hcCCCCCCEEEccCCccCccc
Confidence 98876432 1 567999999999999876555
No 67
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=8e-09 Score=92.95 Aligned_cols=126 Identities=20% Similarity=0.175 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCC
Q 007131 141 ATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN 217 (617)
Q Consensus 141 ~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 217 (617)
..+..+...+++|++|+|+ +|..+++.++..++. .+++|++|+|++| .+++++...++..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~--~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-------------- 88 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLN--NIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-------------- 88 (185)
T ss_dssp HHHHHHHTTCTTCCEEECT--TCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH--------------
T ss_pred HHHHHHHhcCCCCCEEEec--CCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH--------------
Confidence 3455566666777777774 243666666655543 2456667777666 5666665544321
Q ss_pred CCHHHHhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEe--ccCCCCHHH---HHHHHhcCCCCCEEEccCCC
Q 007131 218 VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDV--SRTDVGPIT---ISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l--~~~~~~~~~---l~~~~~~~~~L~~L~l~~c~ 289 (617)
+...++|++|++++| .+++.++..++ ..+++|++|++ ++|.+++.+ +...+...+.|+.|++++|.
T Consensus 89 -----L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 -----LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -----HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -----HHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 122344444455444 45555544443 23455666666 556666554 33334445667777776665
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.99 E-value=1.3e-10 Score=114.61 Aligned_cols=175 Identities=19% Similarity=0.125 Sum_probs=86.8
Q ss_pred hCCCceEEEecCCCCccH--HHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHH-HHH-
Q 007131 101 RCMNLQKLRFRGAESADS--IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD-AVK- 172 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~-~l~- 172 (617)
.+++|++|+++++..... .+.. ..++|++|+++++. ++.... .....+++|++|+++ ++ .+... ++.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLS--DN-PELGERGLIS 193 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECC--SC-TTCHHHHHHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECC--CC-CcCcchHHHH
Confidence 345666666666543321 1110 12566666666654 222110 112345666677664 23 33321 121
Q ss_pred HH-HhcCCCCCeeeccCccCCcH--HHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHH
Q 007131 173 AI-ALCCPKLKKLRLSGIRDICG--DAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV 245 (617)
Q Consensus 173 ~l-~~~~~~L~~L~l~~~~~i~~--~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l 245 (617)
.+ ...+++|++|+++++ .++. .....+...+++|++|++++| .++. ..+..+++|++|++++| .++ .
T Consensus 194 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~--~- 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLK--Q- 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCS--S-
T ss_pred HHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccC--h-
Confidence 11 144566777777766 4442 222234445567777777766 3333 22334566777777665 333 1
Q ss_pred HHHHhc-CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 246 SQVWHK-LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 246 ~~l~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+... .++|++|++++|.++.. +. +..+++|++|++++|++.
T Consensus 268 --ip~~~~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 --VPKGLPAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --CCSSCCSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhccCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCC
Confidence 1111 15677777777665433 22 445667777777766643
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.98 E-value=4.3e-11 Score=116.59 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=122.7
Q ss_pred HhCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 100 SRCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
..+++|++|+++++...... ....+++|++|+++++..++... ......+++|++|++++ + .++... ......
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~-~~~~~~ 127 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDR--C-GLQELG-PGLFRG 127 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCC--C-cCCEEC-HhHhhC
Confidence 45688999999888654321 12267899999998885333311 12234578999999963 3 343211 112345
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.-.. .....+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++
T Consensus 128 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 202 (285)
T 1ozn_A 128 LAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVH-PHAFRDLGR 202 (285)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTT
T ss_pred CcCCCEEECCCC-cccccCH-hHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC-cccccC-HhHccCccc
Confidence 789999999987 4442111 12345789999999998 4543 34678899999999987 343321 122356889
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
|++|++++|.++... ...+..+++|+.|++++|+...+..
T Consensus 203 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 203 LMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCCCC
Confidence 999999998776432 3456779999999999998776654
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=1.1e-10 Score=106.75 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=111.7
Q ss_pred hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 122 LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 122 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..+++|++|+++++. +++ +. -...+++|++|++++ | .+++. .. ...+++|++|+++++ .+++.....+
T Consensus 41 ~~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~--n-~~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTD--LT-GIEYAHNIKDLTINN--I-HATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL- 108 (197)
T ss_dssp HHHHTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEES--C-CCSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-
T ss_pred hhcCCccEEeccCCC-ccC--hH-HHhcCCCCCEEEccC--C-CCCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-
Confidence 357899999999986 543 22 256689999999973 5 45432 22 344899999999998 6765444433
Q ss_pred hcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
..+++|++|++++| .+++ ..+..+++|++|++++|..+++-. ....+++|++|++++|.+++-. .+..++
T Consensus 109 ~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~ 181 (197)
T 4ezg_A 109 SGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDFP 181 (197)
T ss_dssp TTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGCS
T ss_pred cCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccCC
Confidence 36799999999999 5554 567899999999999986465432 3567999999999998876532 456799
Q ss_pred CCCEEEccCCCC
Q 007131 279 SLKVLCALNCPV 290 (617)
Q Consensus 279 ~L~~L~l~~c~~ 290 (617)
+|+.|+++++++
T Consensus 182 ~L~~L~l~~N~i 193 (197)
T 4ezg_A 182 KLNQLYAFSQTI 193 (197)
T ss_dssp SCCEEEECBC--
T ss_pred CCCEEEeeCccc
Confidence 999999999874
No 71
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1e-09 Score=109.49 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHh-cCCCCceEeecCCC--CCCHH-------HH--hcCcCCCeecccCCCCCCHHHH
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAK-LCPNLTDIGFLDCL--NVDEV-------AL--GNVLSVRFLSVAGTSNMKWGVV 245 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~-~~~~L~~L~l~~~~--~~~~~-------~l--~~~~~L~~L~l~~~~~i~~~~l 245 (617)
+++|++|.+..| .++++++..+.. .+|+|++|+|+.+. ...+. .+ ..+++|++|++++| .+++.+.
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHH
Confidence 456666666655 456555555542 35666666654210 00110 11 23566666666665 4444444
Q ss_pred HHHHh--cCCCCCeEEeccCCCCHHHHHHHH---hcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 246 SQVWH--KLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 246 ~~l~~--~~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
..++. .+|+|++|+++.|.+++.+...+. .++++|+.|++++|. +++.+...+.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQ 328 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHH
Confidence 44432 456666666666666665544443 335666666666664 5555555444
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.97 E-value=4.9e-11 Score=115.24 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=124.2
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|+.|+++++..........+++|++|+++++. +++. . ....+++|++|++++ + .++... ......+++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~--n-~l~~~~-~~~~~~l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTG--N-QLQSLP-NGVFDKLTNL 111 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTT--S-CCCCCC-TTTTTTCTTC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCC--C-ccCccC-hhHhcCCcCC
Confidence 47899999998865432223368999999999987 5442 2 345689999999963 4 454321 1122457999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|+++++ .++... ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|
T Consensus 112 ~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L 186 (272)
T 3rfs_A 112 KELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLKDL 186 (272)
T ss_dssp CEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccC-HHHhcCCccCCEE
Confidence 99999998 554211 112346799999999998 4443 34678999999999998 444211 2234578999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++|.++... +..+..+++|+.|++++|+...+.
T Consensus 187 ~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 187 RLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp ECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ECCCCcCCccC-HHHHhCCcCCCEEEccCCCccccC
Confidence 99998776422 344567999999999999866543
No 73
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=9.6e-09 Score=112.16 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=149.5
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhc
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls 456 (617)
+..+..+++.|++.+++.|..||.+|.+|+. + +..++.+...+++..++. +|.+++.+++..|+++|+||+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~-------~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-D-------AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-S-------HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-C-------cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999973 2 334467888888877654 688889999999999999999
Q ss_pred cc--hhhHHHHHHhCCHHHHHHHHhcCC---------------------HHHHHHHHHHHHHhcCC-cchHHHHHhcCCh
Q 007131 457 VN--AKVAKAVAEEGGINILAVLARSMN---------------------RLVAEEAAGGLWNLSVG-EEHKGAIADAGGV 512 (617)
Q Consensus 457 ~~--~~~~~~i~~~~~i~~L~~lL~~~~---------------------~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i 512 (617)
.+ .+.+..++..|++++|..++++.. .++.+.++.+|++|+.. .+....+.+.+++
T Consensus 105 ~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l 184 (684)
T 4gmo_A 105 QEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTI 184 (684)
T ss_dssp HHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHH
T ss_pred hhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccH
Confidence 74 678899999999999999986411 13456788999999954 4666778889999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCH---HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGV---HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~---~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.|+..|........+++..|+.+|..++.+... ...+.+.+.. ..+..+..+. +..+..++++|.|+..
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHHHHHHHHHHHhHhh
Confidence 9999998653445678999999999999976544 5555655542 2333333333 3557788999999853
No 74
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.94 E-value=1.6e-08 Score=90.91 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=70.2
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHH---hcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIV---ARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 196 (617)
.+++|++|+|++|..+++.++..+. ..+++|++|+|+ +| .+++.+...++. ..++|++|+|+++ .+++.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls--~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV--GT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT--TS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc--CC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 7899999999998459998866655 457899999996 35 799998877654 3578999999998 899988
Q ss_pred HHHHHhc---CCCCceEee--cCCCCCCHH
Q 007131 197 INALAKL---CPNLTDIGF--LDCLNVDEV 221 (617)
Q Consensus 197 l~~l~~~---~~~L~~L~l--~~~~~~~~~ 221 (617)
...++.. ++.|++|++ ++| .+++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~ 138 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNN 138 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHH
Confidence 8777633 345555555 444 44443
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.93 E-value=3.1e-11 Score=119.92 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=125.1
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.++++.|+++++....-.. ...+++|++|+++++. ++ .+......+++|++|+|++ + .++ .+......+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~--n-~l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLAR--N-PLR--ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEES--C-CCC--CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCC--C-ccc--cCcHHHhcCcC
Confidence 4789999999986652111 1258899999999986 54 2333345689999999973 3 454 22223456899
Q ss_pred CCeeeccCccCCcHHHHHHH--------HhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHh
Q 007131 181 LKKLRLSGIRDICGDAINAL--------AKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWH 250 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l--------~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~ 250 (617)
|++|++++|..++. .-..+ ...+++|++|++++| .++. ..+..+++|++|++++|. ++. +..-..
T Consensus 152 L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~ 226 (328)
T 4fcg_A 152 LRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSA--LGPAIH 226 (328)
T ss_dssp CCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCC--CCGGGG
T ss_pred CCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCc--Cchhhc
Confidence 99999999743321 00011 124799999999998 4443 457889999999999983 432 222356
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++|++|++++|.+... ++..+..+++|+.|++++|..++..
T Consensus 227 ~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp GCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred cCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhc
Confidence 799999999999765433 2444567999999999999877654
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.93 E-value=3.1e-10 Score=121.62 Aligned_cols=170 Identities=20% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|+.|+++++..........+++|+.|+|++|. +++.. . ...+++|+.|+|+. | .+++ +.. ...+++|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~--N-~l~~--l~~-l~~l~~L~ 112 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDE--N-KIKD--LSS-LKDLKKLK 112 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCS--S-CCCC--CTT-STTCTTCC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcC--C-CCCC--Chh-hccCCCCC
Confidence 5677777777654432222367888888888775 33311 1 45688888888852 3 4443 122 23478888
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+|+|+++ .++. +.. ...+++|+.|++++|..-....+..+++|++|++++| .+++.. . ...+++|++|++++
T Consensus 113 ~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHN-GISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTS-CCCC--CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCS
T ss_pred EEEecCC-CCCC--Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC-cCCCch--h-hccCCCCCEEECcC
Confidence 8888887 4543 222 3467888888888884333356778888888888887 343221 1 56788888888888
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
|.++.. + .+..+++|+.|++++|++...
T Consensus 185 N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 185 NHISDL--R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCBC--G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCC--h-HHccCCCCCEEEccCCcCcCC
Confidence 877652 2 356688899999888876544
No 77
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=7.4e-09 Score=103.31 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=126.8
Q ss_pred HhCCCceEEEecCCCCc-----------cHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH
Q 007131 100 SRCMNLQKLRFRGAESA-----------DSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS 168 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~ 168 (617)
..+++|+.|.+.+.... -......+|+|+.|+++++..+.- ..+ .+++|++|+|. +..+++
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~---~~~l~~ 207 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEII---SGGLPD 207 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEE---CSBCCH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEe---cCCCCh
Confidence 35689999999654221 112233789999999988743221 111 37899999996 347899
Q ss_pred HHHHHHHh-cCCCCCeeeccCccC--CcH---HHHHHHH--hcCCCCceEeecCCCCCCHHH---H---hcCcCCCeecc
Q 007131 169 DAVKAIAL-CCPKLKKLRLSGIRD--ICG---DAINALA--KLCPNLTDIGFLDCLNVDEVA---L---GNVLSVRFLSV 234 (617)
Q Consensus 169 ~~l~~l~~-~~~~L~~L~l~~~~~--i~~---~~l~~l~--~~~~~L~~L~l~~~~~~~~~~---l---~~~~~L~~L~l 234 (617)
.++..++. .+|+|++|+|+.+.. ..+ ..+..+. ..+|+|++|++.+| .+++.+ + ..+++|++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEEC
Confidence 99988874 589999999863211 111 1122222 34799999999998 566533 2 25789999999
Q ss_pred cCCCCCCHHHHHHHH---hcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 235 AGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 235 ~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+.| .+++.+...+. .++++|+.|++++|.+++..+..+...+ ...++++++.
T Consensus 287 s~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 886 79998887776 4589999999999999999887776644 4568888776
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.91 E-value=2.2e-10 Score=113.02 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=16.2
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++|++++|.++.-. .+..+++|+.|++++|+
T Consensus 272 ~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCC
Confidence 45555555555444210 02345555555555554
No 79
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=1.8e-09 Score=113.06 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=35.9
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|++|++++|..-+...+..+++|++|++++| .+++... ...+++|+.|++++|.++.. ..+..+++|+.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCE
Confidence 34455555555542211122444555555555554 2221110 23455555555555544332 12334555555
Q ss_pred EEccCCCC
Q 007131 283 LCALNCPV 290 (617)
Q Consensus 283 L~l~~c~~ 290 (617)
|++++|.+
T Consensus 358 L~l~~n~l 365 (466)
T 1o6v_A 358 LSAGHNQI 365 (466)
T ss_dssp EECCSSCC
T ss_pred EeCCCCcc
Confidence 55555544
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.90 E-value=7.5e-10 Score=117.78 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=110.9
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH-HHHHHHHhcCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVKAIALCCPKL 181 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~-~~l~~l~~~~~~L 181 (617)
++++.|+++++..........+++|++|+++++. +++... .....+++|+.|+++ ++ .+++ ..+......+++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~--~N-~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQ--MN-QLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECC--SS-CCCBHHHHHHHHTTCTTC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEcc--CC-ccCccccchHHHhhCCCC
Confidence 4577777776654332211356788888888776 443211 122457788888885 34 4553 2233334557888
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .++...-......+++|++|++++| .++......+ ++|++|++++| .++ .+..-...+++|++|++
T Consensus 377 ~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 377 QQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNV 451 (520)
T ss_dssp CEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEEC
T ss_pred CEEECCCC-cCCcccccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEEC
Confidence 88888877 4443111112335678888888887 4655444444 58888888887 444 22222236788888888
Q ss_pred ccCCCCHHHHHH-HHhcCCCCCEEEccCCCCCChhHH
Q 007131 261 SRTDVGPITISR-LLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 261 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
++|.++. ++. .+..+++|+.|++++|+...+...
T Consensus 452 ~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 452 ASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCcCCc--cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8877652 222 355678888888888887766653
No 81
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.87 E-value=4e-08 Score=90.67 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=126.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.|++++.++++.++..|+.+|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--- 110 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQIG------------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--- 110 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---
Confidence 388899999999999999999998752 23467899999999999999999999998753
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.++.|+++|.++++.++..|+.+|.++.. ...++.|..++. +.++.++..|+.+|..+
T Consensus 111 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEI 170 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999853 247888999994 57889999999999998
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
.. ..+++.|..++.+++ +.++..|..+|.++...+.
T Consensus 171 ~~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 171 GG----------ERVRAAMEKLAETGT-GFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CS----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHC------
T ss_pred Cc----------hhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCC
Confidence 42 345678888888875 8999999999999986443
No 82
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=2.1e-09 Score=117.29 Aligned_cols=160 Identities=18% Similarity=0.042 Sum_probs=129.5
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHH-HHHHhcCCHHHHHHHHHHHHHhcCC--cchH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINIL-AVLARSMNRLVAEEAAGGLWNLSVG--EEHK 503 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L-~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~ 503 (617)
...+.++++.|++++++.|..||.+|.+|+.++..+..+...|+|..+ ..+|.+++.+++++|+++|.||+.. .+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345667788899999999999999999999999999999999998765 4568889999999999999999954 4788
Q ss_pred HHHHhcCChHHHHHHHhhc-----C-C-----C-------CHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHh
Q 007131 504 GAIADAGGVKALVDLIFKW-----S-S-----G-------GDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~-----~-~-----~-------~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~ 564 (617)
..+.+.|++++|..++... . . . -..+..+++.+|++||...+ ....+.+.++++.|+.++.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999988540 0 0 0 02355678899999996554 4567778888999998774
Q ss_pred cC--CchhHHHHHHHHHHHHhccC
Q 007131 565 SC--KFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 565 ~~--~~~~~~~~a~~~L~~l~~~~ 586 (617)
+. ...+++..|+.+|..++.++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCcHHHHHHHHHHHHHHhccC
Confidence 32 23689999999999998753
No 83
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.86 E-value=2e-11 Score=120.36 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=94.9
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++|++|+++++....... ...+++|++|+++++. ++..........+++|+.|+++ ++ .++... ......+++
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~--~n-~l~~~~-~~~~~~l~~ 151 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDIS--HT-HTRVAF-NGIFNGLSS 151 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECT--TS-CCEECS-TTTTTTCTT
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECC--CC-cCCccc-hhhcccCcC
Confidence 4666777766664332100 1146667777776654 2221111123446677777774 23 232111 111233567
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++...+......+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|++
T Consensus 152 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~ 227 (306)
T 2z66_A 152 LEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD-TFPYKCLNSLQV 227 (306)
T ss_dssp CCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCC-SGGGTTCTTCCE
T ss_pred CCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccC-hhhccCcccCCE
Confidence 777777766 4433112222345567777777776 3433 345666777777777763 32111 011245677777
Q ss_pred EEeccCCCCHHHHHHHHhcC-CCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~~~ 295 (617)
|++++|.++... +..+..+ ++|++|++++|+...+..
T Consensus 228 L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 228 LDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp EECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred eECCCCCCcccC-HHHHHhhhccCCEEEccCCCeecccC
Confidence 777776654332 1222334 377777777777655543
No 84
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.86 E-value=2e-11 Score=120.37 Aligned_cols=181 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred HhCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHH
Q 007131 100 SRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIA 175 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~ 175 (617)
..+++|++|+++++..... .....+++|++|+++++. ++. +......+++|++|++++ + .++........
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~--l~~~~~~l~~L~~L~l~~--n-~l~~~~~~~~~ 122 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGLEQLEHLDFQH--S-NLKQMSEFSVF 122 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE--EEEEEETCTTCCEEECTT--S-EEESSTTTTTT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc--ChhhcCCCCCCCEEECCC--C-cccccccchhh
Confidence 3456777777777654421 222356777777777765 221 111133567777777752 2 23221111122
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhc
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 251 (617)
..+++|++|+++++ .++... ......+++|++|++++| .+++ ..+..+++|++|++++| .++... ......
T Consensus 123 ~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 197 (306)
T 2z66_A 123 LSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNS 197 (306)
T ss_dssp TTCTTCCEEECTTS-CCEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT
T ss_pred hhccCCCEEECCCC-cCCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcC-HHHhcC
Confidence 34677888888776 333211 112335677888888777 3432 34566778888888776 343211 112345
Q ss_pred CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+++|++|++++|.++... ...+..+++|+.|++++|.+.+
T Consensus 198 l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence 778888888887654321 1123567788888888776544
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=5e-09 Score=109.59 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=47.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
+++|++|+++++ .++.. .. ...+++|++|++++|.......+..+++|++|++++|. +++. .. ...+++|+.
T Consensus 242 l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~ 313 (466)
T 1o6v_A 242 LTNLTDLDLANN-QISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTY 313 (466)
T ss_dssp CTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSE
T ss_pred CCCCCEEECCCC-ccccc--hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCc--hh-hcCCCCCCE
Confidence 455555555554 22211 01 23445555555555522222234455555555555542 2211 11 344566666
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.+++... +..+++|+.|++++|...+
T Consensus 314 L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 314 LTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp EECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred EECcCCcCCCchh---hccCccCCEeECCCCccCC
Confidence 6666655433211 3455666666666665433
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.86 E-value=1.5e-10 Score=114.15 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred hCCCceEEEecCCCCccHHHH----hcCCCccEEeccCCCCCCHH--HHHHHHh-cCCCcceEEEcCCCCCCCCHHHHHH
Q 007131 101 RCMNLQKLRFRGAESADSIIH----LQARNLRELSGDYCRKITDA--TLSVIVA-RHEALESLQLGPDFCERITSDAVKA 173 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~l~~i~~-~~~~L~~L~l~~~~~~~i~~~~l~~ 173 (617)
.+++|++|+++++......+. ..+++|++|+++++. ++.. .+..+.. .+++|++|++++ + .++......
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~--N-~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ--A-HSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES--C-SCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC--C-CCccchHHH
Confidence 367899999988865532221 367899999998876 4332 2222221 137899999963 3 443321112
Q ss_pred HHhcCCCCCeeeccCccCCcH-HHHH-HH-HhcCCCCceEeecCCCCCCH------HHHhcCcCCCeecccCCCCCCHHH
Q 007131 174 IALCCPKLKKLRLSGIRDICG-DAIN-AL-AKLCPNLTDIGFLDCLNVDE------VALGNVLSVRFLSVAGTSNMKWGV 244 (617)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~-~~l~-~l-~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~~~~i~~~~ 244 (617)
+ ..+++|++|+++++ .+.. ..+. .+ ...+++|++|++++| .++. ..+..+++|++|++++| .++...
T Consensus 169 ~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 244 (312)
T 1wwl_A 169 V-RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAA 244 (312)
T ss_dssp C-CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSC
T ss_pred h-ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCccc
Confidence 2 34788999999988 4433 2222 22 156789999999998 4552 12357789999999887 343321
Q ss_pred HHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 245 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
.......+++|++|++++|.++ .++..+ .++|++|++++|.+.+.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCCSC
T ss_pred chhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCCCC
Confidence 0112234688999999998776 222222 16899999998876543
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.86 E-value=4e-08 Score=95.11 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
++.|+.+|.++++.++..|+.+|.++.. .++++.|+.++. +.+..++..|+++|..+....
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~------ 190 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLK---DPNGDVRNWAAFAININKYDN------ 190 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCC------
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCc------
Confidence 4555555555666666666666655532 246777777774 466677777887777764221
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...++.|+.++.+++ ..++..|+.+|.++. +...++.|+.+++++
T Consensus 191 --~~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~--------------~~~~~~~L~~~l~d~ 235 (280)
T 1oyz_A 191 --SDIRDCFVEMLQDKN-EEVRIEAIIGLSYRK--------------DKRVLSVLCDELKKN 235 (280)
T ss_dssp --HHHHHHHHHHTTCSC-HHHHHHHHHHHHHTT--------------CGGGHHHHHHHHTSS
T ss_pred --HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC--------------CHhhHHHHHHHhcCc
Confidence 134566777777664 788888888888774 234678888888764
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.85 E-value=1.9e-10 Score=113.78 Aligned_cols=194 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..-.. .....+++|++|+++++..........+++|++|+++++. ++.. ..+++|+.|++++
T Consensus 37 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l------~~~~~L~~L~l~~ 108 (317)
T 3o53_A 37 KELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAAN 108 (317)
T ss_dssp SEEECTTSCCCCCCH-HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEE------EECTTCCEEECCS
T ss_pred CEEECcCCccCcCCH-HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-cccc------cCCCCcCEEECCC
Confidence 555665544433211 1224456777777777655432222356677777776664 2210 0123444444421
Q ss_pred -------------------CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-
Q 007131 161 -------------------DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE- 220 (617)
Q Consensus 161 -------------------~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~- 220 (617)
+++ .++...-. ....+++|++|+++++ .++......+...+++|++|++++|. ++.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSS-CCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CccCCcCccccCCCCEEECCCC-CCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 011 22211000 0122455555555555 33332222233344566666666652 332
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
.....+++|++|++++| .++.- ..-...+++|++|++++|.++. ++..+..+++|+.|++++|+..
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFM--GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEE--CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccccccCCEEECCCC-cCCcc--hhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 22234566666666665 33211 1113456667777777766552 2333455667777777777654
No 89
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.85 E-value=1.2e-10 Score=113.34 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
.+++++|+++++....... ...+++|++|+++++. ++... ......+++|++|+++ ++..++...... ...++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~--~n~~l~~~~~~~-~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLS--DNAQLRSVDPAT-FHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC--SCTTCCCCCTTT-TTTCT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCC--CCCCccccCHHH-hcCCc
Confidence 3689999999987654221 2368999999999885 44321 1233468999999996 343243321111 23479
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|+
T Consensus 106 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~ 180 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCC
T ss_pred CCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccC
Confidence 9999999998 454311 1223467999999999984 443 44788999999999997 444211 11235689999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++++|.++... +..+..+++|+.|++++|.+...
T Consensus 181 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 181 RLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp EEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCcccccC-HhHccCcccccEeeCCCCcCCcC
Confidence 9999998876432 34456789999999999976543
No 90
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=5.8e-08 Score=88.78 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=126.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.+++++.++++.++..|+.+|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 105 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIG------------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--- 105 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---
Confidence 388899999999999999999998652 22467899999999999999999999998743
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
..+++.|+.+|.++++.++..|+.+|.++.. .+.++.|+.++. +.++.++..|+.+|..+
T Consensus 106 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 -------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 2468889999999999999999999999853 357889999994 57889999999999998
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.. ..+++.|..++.+++ +.++..|..+|..+.
T Consensus 166 ~~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GG----------ERVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp CS----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred Cc----------hhHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 32 235678888888875 899999999999874
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.83 E-value=6.1e-10 Score=112.00 Aligned_cols=182 Identities=15% Similarity=0.077 Sum_probs=94.1
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++.. .......+++|++|++++ + .++..........+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNL-SSSWFKPLSSLTFLNLLG--N-PYKTLGETSLFSHL 148 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSC-CHHHHTTCTTCSEEECTT--C-CCSSSCSSCSCTTC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcC-CHhHhCCCccCCEEECCC--C-CCcccCchhhhccC
Confidence 45667777777665443211 1245677777777664 3321 112234567777777742 2 33321000112346
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++..++.-. ......+++|++|++++|. ++. ..+..+++|++|++++|. ++... ..+...+++|
T Consensus 149 ~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L 224 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV 224 (353)
T ss_dssp TTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred CCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence 677777777653222110 0112345667777777662 332 345566677777776653 32211 2233446666
Q ss_pred CeEEeccCCCCH---------------------------H---HHHHHHhcCCCCCEEEccCCCCC
Q 007131 256 VGLDVSRTDVGP---------------------------I---TISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 256 ~~L~l~~~~~~~---------------------------~---~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+.|++++|.++. . .++..+..+++|+.|++++|.+.
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 666666654332 1 23445566777777777777544
No 92
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.83 E-value=1.1e-09 Score=114.32 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 206 NLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
+|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... +..+.++++|++
T Consensus 276 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 351 (455)
T 3v47_A 276 GVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQN-EINKID-DNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEV 351 (455)
T ss_dssp CCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCE
T ss_pred CceEEEecCc-cccccchhhcccCCCCCEEECCCC-cccccC-hhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCE
Confidence 4444555444 2221 22344555555555554 222110 111234455555555555443221 222344555555
Q ss_pred EEccCCCC
Q 007131 283 LCALNCPV 290 (617)
Q Consensus 283 L~l~~c~~ 290 (617)
|++++|.+
T Consensus 352 L~Ls~N~l 359 (455)
T 3v47_A 352 LDLSYNHI 359 (455)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 55555543
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.81 E-value=2.1e-09 Score=115.13 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|++|++++| .++.. ...+++|++|++++| .++ .+.. ...+++|+.|++++|.++... +..+..+++|+.|+
T Consensus 431 ~~L~~L~Ls~N-~l~~~-~~~l~~L~~L~Ls~N-~l~--~ip~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF-SLFLPRLQELYISRN-KLK--TLPD-ASLFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIW 503 (549)
T ss_dssp TTCSEEECCSS-CCSCC-CCCCTTCCEEECCSS-CCS--SCCC-GGGCTTCCEEECCSSCCCCCC-TTGGGGCTTCCEEE
T ss_pred CCceEEECCCC-Chhhh-cccCChhcEEECCCC-ccC--cCCC-cccCccCCEEecCCCccCCcC-HHHHhcCcccCEEE
Confidence 35555555555 23221 135566666666665 332 1111 134666677777666554321 22344566777777
Q ss_pred ccCCCCCChh
Q 007131 285 ALNCPVLEEE 294 (617)
Q Consensus 285 l~~c~~~~~~ 294 (617)
+++|+...+.
T Consensus 504 l~~N~~~~~~ 513 (549)
T 2z81_A 504 LHTNPWDCSC 513 (549)
T ss_dssp CCSSCBCCCH
T ss_pred ecCCCccCCC
Confidence 7776655444
No 94
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.81 E-value=2.8e-10 Score=118.87 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=54.5
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.. .......+++|++|++++| .+++ ..+..+++|++|++++| .++... ......+++|
T Consensus 275 ~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSID-SRMFENLDKL 349 (455)
T ss_dssp SCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-GGGGTTCTTC
T ss_pred cCceEEEecCc-ccccc-chhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcC-hhHhcCcccC
Confidence 46666666665 33321 1112234566777777666 3333 24556666666666665 232111 1122445666
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++++|.++... +..+..+++|++|++++|.+.
T Consensus 350 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 350 EVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcccccC-hhhccccccccEEECCCCccc
Confidence 66666666553321 222344666666666666543
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.80 E-value=2.3e-10 Score=110.37 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=129.8
Q ss_pred cccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceE
Q 007131 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (617)
Q Consensus 79 ~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L 156 (617)
.|+.+++++..++. +.. ...+++++|+++++....... ...+++|++|+++++. ++.. ...+...+++|++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSS-CCS---CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCc-cCC---CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEE
Confidence 35667666544432 110 122579999999986543221 2267999999999886 4321 11233568999999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~ 233 (617)
+++. + .++.... .....+++|++|+++++ .++.-.. .....+++|++|++++|. ++. ..+..+++|++|+
T Consensus 91 ~l~~--n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 91 WVTD--N-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp ECCS--S-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCC--C-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeE
Confidence 9963 3 4442111 12245789999999988 4443111 123467999999999983 443 3467899999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 234 l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++| .++... ......+++|++|++++|.++... ...+..+++|+.|++++|+..-+.
T Consensus 164 L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 164 LYNN-QLKRVP-EGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSS-CCSCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ecCC-cCcEeC-hhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCeeCCC
Confidence 9997 333211 112356899999999998765321 234567899999999999865443
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.80 E-value=2.6e-10 Score=114.76 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=99.0
Q ss_pred hCCCceEEEecCCCCccHHH---HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 101 RCMNLQKLRFRGAESADSII---HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
.+++|++|+++++....... ...+++|++|+++++..++... ......+++|++|++++ + .++...... ...
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-l~~ 196 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDA--S-DLQSYEPKS-LKS 196 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEE--T-TCCEECTTT-TTT
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCC--C-CcCccCHHH-Hhc
Confidence 34555555555543321110 1134555555555543222110 01122355556666542 2 222211111 123
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH------HHhcCcCCCeecccCCCCCCHHHHHHH---
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV------ALGNVLSVRFLSVAGTSNMKWGVVSQV--- 248 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~------~l~~~~~L~~L~l~~~~~i~~~~l~~l--- 248 (617)
+++|++|+++++ .++.-. ..+...+++|++|++++| .++.. ....+..++.++++++ .+++..+..+
T Consensus 197 l~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~ 272 (353)
T 2z80_A 197 IQNVSHLILHMK-QHILLL-EIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKL 272 (353)
T ss_dssp CSEEEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHH
T ss_pred cccCCeecCCCC-ccccch-hhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcchhhhHHH
Confidence 566666666666 343221 223334577777777776 33331 1234566777777765 5666655444
Q ss_pred HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 249 WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
...+++|+.|++++|.++.-. ..++..+++|++|++++|+...+..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 467999999999999876211 2334679999999999999887763
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.79 E-value=7.7e-11 Score=123.74 Aligned_cols=107 Identities=10% Similarity=0.083 Sum_probs=60.5
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+++|++|+++++ .++......+...+++|++|++++|. ++. .....+++|++|++++| .++.. ..-...+++|+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~L~ 217 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFM--GPEFQSAAGVT 217 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEE--CGGGGGGTTCS
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCC--CHhHcCCCCcc
Confidence 566666666666 44432223333345667777777663 333 23344667777777776 33321 11134567777
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
.|++++|.++. ++..+..+++|+.|++++|+..
T Consensus 218 ~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 77777776653 3333455677777777777654
No 98
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.78 E-value=1.3e-10 Score=129.49 Aligned_cols=104 Identities=24% Similarity=0.288 Sum_probs=46.9
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
.+++|++|+++++ .++.. ... ..+++|++|++++|...+. ..+..+++|++|++++| .++.. +......+++|
T Consensus 176 ~l~~L~~L~Ls~n-~l~~~--~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L 249 (768)
T 3rgz_A 176 GCGELKHLAISGN-KISGD--VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGD-FSRAISTCTEL 249 (768)
T ss_dssp CCTTCCEEECCSS-EEESC--CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSC-HHHHTTTCSSC
T ss_pred cCCCCCEEECCCC-ccccc--CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCc-ccHHHhcCCCC
Confidence 3555555555555 22210 000 2445566666655532111 12455566666666555 23221 12223455666
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++++|.++... +.. .+++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~-~~~--~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 250 KLLNISSNQFVGPI-PPL--PLKSLQYLSLAENK 280 (768)
T ss_dssp CEEECCSSCCEESC-CCC--CCTTCCEEECCSSE
T ss_pred CEEECCCCcccCcc-Ccc--ccCCCCEEECcCCc
Confidence 66666665432111 111 45566666666554
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.76 E-value=2e-09 Score=111.90 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=132.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..- .. ...+++|++|+++++..... ....+++|++|+++++. ++... ...+++|++|++++
T Consensus 45 ~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 45 TSLDCHNSSITDM--TG-IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDT 115 (457)
T ss_dssp CEEECCSSCCCCC--TT-GGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCS
T ss_pred CEEEccCCCcccC--hh-hcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCC
Confidence 5666666554431 12 35678999999998865542 23367899999999986 44422 45689999999963
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i 240 (617)
+ .++.. . ...+++|++|+++++ .++.- . ...+++|++|++++|..++...+..+++|++|++++| .+
T Consensus 116 --N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l 182 (457)
T 3bz5_A 116 --N-KLTKL--D--VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KI 182 (457)
T ss_dssp --S-CCSCC--C--CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CC
T ss_pred --C-cCCee--c--CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-cc
Confidence 4 45442 1 345789999999988 55542 1 3467899999999997676666788999999999997 44
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+.- . ...+++|+.|++++|.++... +..+++|+.|++++|.+.+
T Consensus 183 ~~l--~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 183 TEL--D--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCC--C--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC
T ss_pred cee--c--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccc
Confidence 432 1 467899999999998776542 5678999999999998655
No 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.76 E-value=3.4e-10 Score=118.00 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.7
Q ss_pred CCCceEEEecCC
Q 007131 102 CMNLQKLRFRGA 113 (617)
Q Consensus 102 ~~~L~~L~l~~~ 113 (617)
+++|++|+|+++
T Consensus 98 l~~L~~L~Ls~n 109 (452)
T 3zyi_A 98 LHHLEVLQLGRN 109 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 344455555444
No 101
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.75 E-value=2.4e-08 Score=106.89 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=91.4
Q ss_pred CCCceEEEecCCCCcc--HHHHhcCCCccEEeccCCCCCCHHHHHHH--HhcCCCcceEEEcCCCCCCCCHHH-HHHHHh
Q 007131 102 CMNLQKLRFRGAESAD--SIIHLQARNLRELSGDYCRKITDATLSVI--VARHEALESLQLGPDFCERITSDA-VKAIAL 176 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~l~~i--~~~~~~L~~L~l~~~~~~~i~~~~-l~~l~~ 176 (617)
.++|+.|+++++.... ......+++|++|+++++. +++...... ...+++|+.|+++ +| .++... ......
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS--QN-HLRSMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECT--TS-CCCCHHHHHHHGG
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEcc--CC-cccccccchhhhh
Confidence 4556666666654331 1111246667777776665 544332211 2346667777774 23 443322 112234
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
.+++|++|+++++ .++. +......+++|++|++++|. ++...-...++|++|++++| .++. +...+++|+
T Consensus 385 ~l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~-----~~~~l~~L~ 454 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDS-----FSLFLPRLQ 454 (549)
T ss_dssp GCTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSC-----CCCCCTTCC
T ss_pred cCCCCCEEECCCC-CCcc--CChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Chhh-----hcccCChhc
Confidence 4666777777666 4431 21122345666777776663 33211111256777777776 3332 124677777
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|++++|.++ .++. ...+++|+.|++++|...+
T Consensus 455 ~L~Ls~N~l~--~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 455 ELYISRNKLK--TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp EEECCSSCCS--SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCccC--cCCC-cccCccCCEEecCCCccCC
Confidence 7877777665 2332 2347777888887776543
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.75 E-value=8.1e-09 Score=101.65 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCceEEEecCCCCccHHH-----HhcCCCccEEeccCCCCCCHHHHHHHH-hcCCCcceEEEcCCCCCCCCHH----HHH
Q 007131 103 MNLQKLRFRGAESADSII-----HLQARNLRELSGDYCRKITDATLSVIV-ARHEALESLQLGPDFCERITSD----AVK 172 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~l~~i~-~~~~~L~~L~l~~~~~~~i~~~----~l~ 172 (617)
..++.+.+.++....... ...+++|++|+++++. ++......+. ..+++|++|++++ + .++.. ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~--n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRN--V-SWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEES--C-CCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeec--c-cccchhhhhHHH
Confidence 457889998887654322 1255779999999886 3322111121 5678999999963 3 45431 111
Q ss_pred HHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH------hcCcCCCeecccCCCCCC--HHH
Q 007131 173 AIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL------GNVLSVRFLSVAGTSNMK--WGV 244 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l------~~~~~L~~L~l~~~~~i~--~~~ 244 (617)
.+. .+++|++|+++++ .++.... .....+++|++|++++|...++.++ ..+++|++|++++| .++ ...
T Consensus 140 ~~~-~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 215 (310)
T 4glp_A 140 QQW-LKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV 215 (310)
T ss_dssp HTT-BCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred Hhh-hccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence 222 5889999999988 4533111 1224678999999999954443333 56789999999998 454 222
Q ss_pred HHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcC---CCCCEEEccCCCCC
Q 007131 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSS---KSLKVLCALNCPVL 291 (617)
Q Consensus 245 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~c~~~ 291 (617)
...+...+++|++|++++|.++... +..+..+ ++|++|++++|.+.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCC
Confidence 3345578899999999998765432 1112233 79999999988755
No 103
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.75 E-value=4.7e-10 Score=116.95 Aligned_cols=203 Identities=17% Similarity=0.093 Sum_probs=136.0
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+|+++....... ...+++|++|+++++. ++.. .......+++|+.|++
T Consensus 102 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 102 EVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESI-PSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEE-CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-ccee-CHhHHhcCCcccEEeC
Confidence 5556655544321 11123356899999999986553221 2258899999999986 4421 1123456899999999
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeeccc
Q 007131 159 GPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVA 235 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~ 235 (617)
+ .|..++..... ....+++|++|+++++ .++. +.. ...+++|++|++++| .++. ..+..+++|++|+++
T Consensus 179 ~--~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 179 G--ELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKD--MPN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp C--CCTTCCEECTT-TTTTCTTCCEEECTTS-CCSS--CCC-CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECT
T ss_pred C--CCCCccccChh-hccCCCCCCEEECCCC-cccc--ccc-ccccccccEEECcCC-cCcccCcccccCccCCCEEEeC
Confidence 6 45555432111 1235799999999998 5543 122 346789999999998 4443 568899999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 236 GTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 236 ~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+| .++... .....++++|+.|++++|.++... ...+..+++|+.|++++|+..-+....
T Consensus 251 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 251 NS-QVSLIE-RNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TS-CCCEEC-TTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CC-cCceEC-HHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCcCCCCCch
Confidence 97 443221 122457899999999998776322 334567899999999999876665433
No 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.75 E-value=3.6e-10 Score=117.37 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=40.7
Q ss_pred CCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC
Q 007131 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 280 (617)
+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... ...+..+++|
T Consensus 206 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 281 (440)
T 3zyj_A 206 LIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHL 281 (440)
T ss_dssp CSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTC
T ss_pred CcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEECCCCCCCccC-hhHhccccCC
Confidence 445555555555 2332 23445555555555554 222111 111234556666666665544221 2233445666
Q ss_pred CEEEccCCCCCChh
Q 007131 281 KVLCALNCPVLEEE 294 (617)
Q Consensus 281 ~~L~l~~c~~~~~~ 294 (617)
+.|++++|+..-+.
T Consensus 282 ~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 282 ERIHLHHNPWNCNC 295 (440)
T ss_dssp CEEECCSSCEECSS
T ss_pred CEEEcCCCCccCCC
Confidence 66666666544333
No 105
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.74 E-value=2.9e-10 Score=118.09 Aligned_cols=181 Identities=16% Similarity=0.093 Sum_probs=95.8
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+|+++...... ....+++|++|+|+++. ++... ......+++|++|+|++ + .++.... .....+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--N-~i~~~~~-~~~~~l 159 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIP-NGAFVYLSKLKELWLRN--N-PIESIPS-YAFNRI 159 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCC-TTTSCSCSSCCEEECCS--C-CCCEECT-TTTTTC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeC-HhHhhccccCceeeCCC--C-cccccCH-HHhhhC
Confidence 3466667776666443211 11245667777776654 33210 11223466677777742 2 3332110 112235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
++|++|+++++..++.-.. .....+++|++|++++|. ++. ..+..+++|++|++++| .++... .....++++|+.
T Consensus 160 ~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~ 235 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN-HLSAIR-PGSFQGLMHLQK 235 (440)
T ss_dssp TTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTS-CCCEEC-TTTTTTCTTCCE
T ss_pred cccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCc-CccccccCCCcccCEEECCCC-ccCccC-hhhhccCccCCE
Confidence 6777777776543322110 122345777777777763 332 34566677777777776 343211 122345777888
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 236 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 236 LWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp EECTTCCCCEEC-TTSSTTCTTCCEEECTTSCCCC
T ss_pred EECCCCceeEEC-hhhhcCCCCCCEEECCCCCCCc
Confidence 888777654332 2334567788888888776543
No 106
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.74 E-value=3.8e-10 Score=108.93 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=118.2
Q ss_pred HHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
...+++|++|+++++..........+++|++|+++++. ++.. .......+++|++|++++ + .++... ......+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~~~-~~~~~~l 132 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSL-PNGVFDKLTNLKELVLVE--N-QLQSLP-DGVFDKL 132 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTTC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcc-ChhHhcCCcCCCEEECCC--C-cCCccC-HHHhccC
Confidence 34679999999999876653223378999999999986 4421 112235689999999963 4 454211 1122457
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 133 ~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 207 (272)
T 3rfs_A 133 TNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSL 207 (272)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccC-HHHHhCCcCC
Confidence 99999999998 554211 122346799999999998 4443 34678999999999998 343211 2234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++++|.+. ..|++|+.++++.+.
T Consensus 208 ~~L~l~~N~~~--------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 208 QYIWLHDNPWD--------CTCPGIRYLSEWINK 233 (272)
T ss_dssp CEEECCSSCBC--------CCTTTTHHHHHHHHH
T ss_pred CEEEccCCCcc--------ccCcHHHHHHHHHHh
Confidence 99999998754 236777777766554
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.74 E-value=8.3e-10 Score=119.30 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=100.5
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+|++|....... ...+++|++|+++++. ++.. .......+++|+.|++
T Consensus 102 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 102 QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQL 178 (597)
T ss_dssp CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBC-CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCC-ChhhhhcCCcCcEEEC
Confidence 5555555443321 11222445778888888775543211 1256788888888775 3321 1112345778888888
Q ss_pred cCCCCCCCCHHHHHHHHhcCCC----------------------------------------CCeeeccCccCCcHHHHH
Q 007131 159 GPDFCERITSDAVKAIALCCPK----------------------------------------LKKLRLSGIRDICGDAIN 198 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~----------------------------------------L~~L~l~~~~~i~~~~l~ 198 (617)
++ + .++...+ ..+++ |+.|+++++ .+++.
T Consensus 179 ~~--N-~l~~~~~----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--- 247 (597)
T 3oja_B 179 SS--N-RLTHVDL----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--- 247 (597)
T ss_dssp TT--S-CCSBCCG----GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS-CCCCC---
T ss_pred cC--C-CCCCcCh----hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC-CCCCC---
Confidence 52 3 3332211 11233 333333333 22221
Q ss_pred HHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHh
Q 007131 199 ALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLT 275 (617)
Q Consensus 199 ~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~ 275 (617)
.....+++|++|++++| .++. ..+..+++|++|++++| .++. +......+|+|+.|++++|.++. ++..+.
T Consensus 248 ~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~ 321 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQP 321 (597)
T ss_dssp GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHH
T ss_pred hhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCCCc--cCcccc
Confidence 11234567777777766 3332 34566677777777765 3322 11112346777777777776552 233334
Q ss_pred cCCCCCEEEccCCCCCC
Q 007131 276 SSKSLKVLCALNCPVLE 292 (617)
Q Consensus 276 ~~~~L~~L~l~~c~~~~ 292 (617)
.+++|+.|++++|.+.+
T Consensus 322 ~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT 338 (597)
T ss_dssp HHTTCSEEECCSSCCCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 56777777777776543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=3.8e-10 Score=108.14 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.+++|++|+++++. +++. . -...+++|+.|++++ + .+++... ...+++|++|+++++ .++. +..+.
T Consensus 39 ~l~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~L~~--N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSL--A-GMQFFTNLKELHLSH--N-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIP- 104 (263)
T ss_dssp HHTTCSEEECTTSC-CCCC--T-TGGGCTTCCEEECCS--S-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCC-
T ss_pred hcCcCcEEECcCCC-cccc--h-HHhhCCCCCEEECCC--C-ccCCChh---hccCCCCCEEECCCC-ccCC--cCccc-
Confidence 45666666666654 3321 1 233466777777742 3 3433211 334667777777766 4432 11121
Q ss_pred cCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
. ++|++|++++| .+++ ..+..+++|++|++++| .+++. . ....+++|++|++++|.++.. ..+..+++|+
T Consensus 105 ~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~--~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSI--V-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVN 175 (263)
T ss_dssp C-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBC--G-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCC
T ss_pred c-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCC--h-HHccCCCCCEEECCCCcCcch---HHhccCCCCC
Confidence 1 67777777777 3333 45667777777777776 34332 1 245577777777777766544 3345677788
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|++++|+....
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 888877765443
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.74 E-value=6e-09 Score=108.31 Aligned_cols=182 Identities=16% Similarity=0.078 Sum_probs=128.4
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..- . ...+++|++|+++++..... ....+++|++|+++++. ++... ...+++|++|+++.
T Consensus 67 ~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 67 TKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCAR 136 (457)
T ss_dssp SEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTT
T ss_pred CEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCC
Confidence 5566666544431 1 34568899999998866542 23368899999999886 44321 45688999999962
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i 240 (617)
+ .++... ...+++|++|+++++..++.-. ...+++|++|++++| .++...+..+++|++|++++| .+
T Consensus 137 --N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N-~l 203 (457)
T 3bz5_A 137 --N-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTN-NI 203 (457)
T ss_dssp --S-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSS-CC
T ss_pred --C-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceeccccCCCCCEEECcCC-cC
Confidence 3 454421 3457899999999885444321 235789999999998 455544778899999999987 44
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+... ...+++|++|++++|.++. ++ +..+++|+.|++++|.+.+.
T Consensus 204 ~~~~----l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 204 TKLD----LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCC----CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC
T ss_pred Ceec----cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCc
Confidence 4321 4578999999999988765 33 56789999999999976543
No 110
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.73 E-value=2.2e-10 Score=124.38 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=89.1
Q ss_pred hCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 101 RCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
.+++|++|+++++..... .....+++|++|+++++. ++. +......+++|+.|+++ ++ .++.........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~~ 421 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQ--HS-TLKRVTEFSAFL 421 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECT--TS-EEESTTTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECC--CC-ccCCccChhhhh
Confidence 456777777777754321 223366777777777765 221 11222346667777774 23 222211101123
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 252 (617)
.+++|++|++++| .++.... .....+++|++|++++| .+++ ..+..+++|++|++++| .++... ......+
T Consensus 422 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 496 (606)
T 3vq2_A 422 SLEKLLYLDISYT-NTKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDTL 496 (606)
T ss_dssp TCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTC
T ss_pred ccccCCEEECcCC-CCCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhccc
Confidence 3566666666666 3322111 11234566666666666 2332 23455666666666665 332111 1112445
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|.++... +..+..+++|+.|++++|.+.
T Consensus 497 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCC
T ss_pred ccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCc
Confidence 66666666666554321 233445666666666666543
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.73 E-value=5.6e-10 Score=121.18 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=113.2
Q ss_pred HHhCCCceEEEecCCCCccHH----HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHH
Q 007131 99 ASRCMNLQKLRFRGAESADSI----IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAI 174 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l 174 (617)
...+++|++|+++++...... ....+++|++|+++++. ++.. .......+++|+.|+++ ++ .++.......
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~ 420 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLA--FT-RLKVKDAQSP 420 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECT--TC-CEECCTTCCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECC--CC-cCCCcccchh
Confidence 345688999999888665321 22367888999988875 3221 11223457888888885 23 3322111122
Q ss_pred HhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH------HHHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 175 ALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE------VALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 175 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
...+++|++|+++++ .++..... ....+++|++|++++| .+++ ..+..+++|++|++++| .++... ...
T Consensus 421 ~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~ 495 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHS-LLDISSEQ-LFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID-QHA 495 (606)
T ss_dssp TTTCTTCCEEECTTC-CCBTTCTT-TTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC-TTT
T ss_pred hhCcccCCEEECCCC-ccCCcCHH-HHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccC-hhh
Confidence 334778888888887 44432111 2335688888888887 3433 34677888888888887 343211 122
Q ss_pred HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 249 WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
...+++|++|++++|.++... +..+.+++.| .|++++|.+.+.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGG-GGGGTTCCSC-EEECCSSCCCCC
T ss_pred hccccCCCEEECCCCccCcCC-hhHhCccccc-EEECcCCccccc
Confidence 356788888888888776543 4445667778 888888876543
No 112
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.73 E-value=8.5e-07 Score=85.67 Aligned_cols=136 Identities=15% Similarity=0.006 Sum_probs=99.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.++.|+.++.++++.++..|+.+|.++.. .++++.|+.++.++++.++..|+.+|..+....
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------- 190 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------- 190 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------
Confidence 34444555555555555555555554422 347999999999999999999999999985332
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
..+++.|+.++. +.++.++..|+.+|+++. ....++.|+.++.++ .++..|+.+|..+..
T Consensus 191 ~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~---- 250 (280)
T 1oyz_A 191 SDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN---TVYDDIIEAAGELGD---- 250 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc----
Confidence 246788899884 578899999999999985 345788899998763 388899999999842
Q ss_pred CCCccccccccCcHHHHHHHhcCC
Q 007131 589 NSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 589 ~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...++.|..++...
T Consensus 251 ----------~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 251 ----------KTLLPVLDTMLYKF 264 (280)
T ss_dssp ----------GGGHHHHHHHHTTS
T ss_pred ----------hhhhHHHHHHHhcC
Confidence 24689999988754
No 113
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.72 E-value=9.2e-10 Score=112.38 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+++++....... ...+++|++|+++++. ++... ......+++|+.|++
T Consensus 96 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 96 QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQL 172 (390)
T ss_dssp CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTSSCTTCCEEEC
T ss_pred CEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccC-hhhccCCCCCCEEEC
Confidence 5556655443321 11122345778888888775543211 1257788888888775 33211 112345778888888
Q ss_pred c
Q 007131 159 G 159 (617)
Q Consensus 159 ~ 159 (617)
+
T Consensus 173 ~ 173 (390)
T 3o6n_A 173 S 173 (390)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.72 E-value=2.3e-09 Score=106.73 Aligned_cols=175 Identities=16% Similarity=0.204 Sum_probs=96.7
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHH-HHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAV-KAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l-~~l~~~~~~ 180 (617)
+++|++|+++++.... +.....++|++|+++++. ++.. .......+++|+.|+++. + .++..+. ......+++
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGT--N-PLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCS--S-CCCGGGBCTTGGGGCTT
T ss_pred CCCCCEEECCCCcCCc-cChhhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCC--C-cCCccCcChhhccCCCC
Confidence 4556666665554331 111123566666666654 3221 112234567777777742 3 3332111 112234677
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++. +. ....++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++
T Consensus 173 L~~L~l~~n-~l~~--l~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~ 244 (330)
T 1xku_A 173 LSYIRIADT-NITT--IP--QGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVD-NGSLANTPHLRE 244 (330)
T ss_dssp CCEEECCSS-CCCS--CC--SSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEEC-TTTGGGSTTCCE
T ss_pred cCEEECCCC-cccc--CC--ccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeC-hhhccCCCCCCE
Confidence 777777766 3332 10 012267778888777 3443 45677888888888886 343211 112346788888
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.++ .++..+..+++|++|++++|++..
T Consensus 245 L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 245 LHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred EECCCCcCc--cCChhhccCCCcCEEECCCCcCCc
Confidence 888887765 334445667888888888887544
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=9.1e-09 Score=100.15 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=112.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.+++|++|+++++. +++. .. ...+++|+.|++++ + .+++.. . ...+++|++|+++++ .++. +.. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~--n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNG--N-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCS--S-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GT
T ss_pred hcCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccC--C-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hc
Confidence 57899999999986 4432 12 45689999999963 4 554422 2 456899999999998 5554 222 45
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|++|++++|..-.-..+..+++|++|++++| .++.. .....+++|++|++++|.++... . +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCccccch--h-hcCCCccCE
Confidence 67999999999994333366889999999999998 44432 33567999999999999876533 1 678999999
Q ss_pred EEccCCCCCCh
Q 007131 283 LCALNCPVLEE 293 (617)
Q Consensus 283 L~l~~c~~~~~ 293 (617)
|++++|.+..-
T Consensus 183 L~L~~N~i~~l 193 (291)
T 1h6t_A 183 LYLSKNHISDL 193 (291)
T ss_dssp EECCSSCCCBC
T ss_pred EECCCCcCCCC
Confidence 99999976543
No 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.71 E-value=2.9e-10 Score=123.51 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=134.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH---HhcCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII---HLQARNLRELSGDYCRKITDAT-LSVIVARHEALESL 156 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-l~~i~~~~~~L~~L 156 (617)
+.+++.+..+... .......+++|++|+++++....... ...+++|++|+++++. ++... .......+++|++|
T Consensus 304 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 304 KKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp CEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEE
T ss_pred CEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEE
Confidence 4556665554432 11223457899999999986542221 2368999999999986 43321 12234568999999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~ 233 (617)
+++ ++ .++..... ....+++|++|+++++ .++..........+++|++|++++|. ++. ..+..+++|++|+
T Consensus 382 ~l~--~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 382 NLS--YN-EPLSLKTE-AFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp ECC--SC-SCEEECTT-TTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEE
T ss_pred ECC--CC-cCCcCCHH-HhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEE
Confidence 996 34 34322111 2234799999999998 44432222224467999999999984 433 4578899999999
Q ss_pred ccCCCCCCHHHH--HHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 234 VAGTSNMKWGVV--SQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 234 l~~~~~i~~~~l--~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+++| .++...+ ......+++|++|++++|.++... +..+..+++|+.|++++|.+...
T Consensus 456 L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 456 LQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGG
T ss_pred CCCC-CCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcC
Confidence 9998 4433111 123467899999999998876432 34456799999999999976543
No 117
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.70 E-value=1.8e-10 Score=125.06 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=87.7
Q ss_pred cCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 123 QARNLRELSGDYCRKITDAT-LSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~-l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
.+++|++|+++++. ++... +......+++|+.|+++ +| .++.. ......+++|++|+++++ .++........
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~--~n-~l~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 420 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS--FN-GAIIM--SANFMGLEELQHLDFQHS-TLKRVTEFSAF 420 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECC--SC-SEEEE--CCCCTTCTTCCEEECTTS-EEESTTTTTTT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECC--CC-ccccc--hhhccCCCCCCeeECCCC-ccCCccChhhh
Confidence 44555555555553 22110 11223345666666664 23 22211 011223566777777766 33321111123
Q ss_pred hcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
..+++|++|++++|. ++. ..+..+++|++|++++| .+++..+......+++|++|++++|.++... +..+.+++
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCT
T ss_pred hccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccc
Confidence 356777788887773 332 34667788888888776 3332212223456788888888887765432 33456688
Q ss_pred CCCEEEccCCCCCCh
Q 007131 279 SLKVLCALNCPVLEE 293 (617)
Q Consensus 279 ~L~~L~l~~c~~~~~ 293 (617)
+|+.|++++|.+.+.
T Consensus 498 ~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFL 512 (606)
T ss_dssp TCCEEECCSSCCSCE
T ss_pred cCCEEECCCCcCCCc
Confidence 888888888875543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=3.2e-09 Score=92.05 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=44.8
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC--HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+++|++|+++++ .++.. .....+++|++|++++|...+ +..+..+++|++|++++| .+++.........+++|
T Consensus 41 l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence 444555555544 33221 112234455555555542111 122334555555555554 23332222223445555
Q ss_pred CeEEeccCCCCHHH--HHHHHhcCCCCCEEEcc
Q 007131 256 VGLDVSRTDVGPIT--ISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 256 ~~L~l~~~~~~~~~--l~~~~~~~~~L~~L~l~ 286 (617)
++|++++|.++... ....+..+++|++|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555433221 11344456666666554
No 119
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.70 E-value=1.3e-10 Score=125.21 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=37.2
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++|. ++. ..+..+++|++|++++|. +++..+......+++|+.|++++|.++... +..+..+++
T Consensus 419 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTT
T ss_pred cCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccC
Confidence 34555555555552 221 233445555555555542 211111122234555555555555443221 222334555
Q ss_pred CCEEEccCCC
Q 007131 280 LKVLCALNCP 289 (617)
Q Consensus 280 L~~L~l~~c~ 289 (617)
|++|++++|.
T Consensus 496 L~~L~l~~n~ 505 (570)
T 2z63_A 496 LQVLNMASNQ 505 (570)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 5555555554
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.70 E-value=2.4e-09 Score=115.01 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=122.1
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH-HHHHHHHhcCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVKAIALCCPKL 181 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~-~~l~~l~~~~~~L 181 (617)
+++++|+++++..........+++|++|+++++. +++. .......+++|+.|+++ ++ .++. ..+......+++|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~--~N-~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDS-VFQGCSTLKRLQTLILQ--RN-GLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTT-TTTTCCSCSSCCEEECC--SS-CCCBTTHHHHTTTTCTTC
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCc-cccc-hhhhhcccCCCCEEECC--CC-CcCCcccchhhhcCCCCC
Confidence 5788888888765432222467899999999886 5432 12223568899999996 34 5553 1223333557899
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .++...-......+++|++|++++| .++......+ ++|++|++++| .++ .+..-...+++|++|++
T Consensus 406 ~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N-~l~--~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 406 ETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNN-RIM--SIPKDVTHLQALQELNV 480 (562)
T ss_dssp CEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSS-CCC--CCCTTTTSSCCCSEEEC
T ss_pred CEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCC-cCc--ccChhhcCCCCCCEEEC
Confidence 99999988 4443111112345689999999998 5766655666 69999999998 454 12221237889999999
Q ss_pred ccCCCCHHHHHH-HHhcCCCCCEEEccCCCCCChhHH
Q 007131 261 SRTDVGPITISR-LLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 261 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
++|.++. ++. .+..+++|+.|++++|+...+...
T Consensus 481 ~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 481 ASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCCC--CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCC--CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9987762 232 356789999999999987776653
No 121
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.69 E-value=1.1e-09 Score=106.46 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=114.9
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++...... ....+++|++|+++++. ++.... ...+++|+.|+++. + .++. +......+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~Ls~--N-~l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV---DGTLPVLGTLDLSH--N-QLQS--LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---CSCCTTCCEEECCS--S-CCSS--CCCCTTTCTT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC---CCCCCcCCEEECCC--C-cCCc--CchhhccCCC
Confidence 57889999888665322 22367889999998876 433111 14678899999963 3 4431 2222345788
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.- .......+++|++
T Consensus 102 L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 102 LTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDT 176 (290)
T ss_dssp CCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCE
T ss_pred CCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCcc-CHHHhcCcCCCCE
Confidence 999999987 454211 012345688999999988 3433 34577889999999887 34311 1123356789999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
|++++|.++ .++.-+...++|+.|++++|+..-+..
T Consensus 177 L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 177 LLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EECCCCcCC--ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999998765 233334456789999999888665543
No 122
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=4e-09 Score=117.19 Aligned_cols=181 Identities=14% Similarity=0.145 Sum_probs=110.3
Q ss_pred HHhCCCceEEEecCCCCcc-----------------HHHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 99 ASRCMNLQKLRFRGAESAD-----------------SIIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~-----------------~~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
...+++|+.|+|+++.+.. .++.. .+++|++|+|++|..... +......+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEE
Confidence 4456888999998887665 13221 578889999988763222 223345688899999
Q ss_pred EcCCCCCCCCH-H---HHHHHH---hcCCCCCeeeccCccCCcHHHHHH--HHhcCCCCceEeecCCCCCCH-HHHhcCc
Q 007131 158 LGPDFCERITS-D---AVKAIA---LCCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVDE-VALGNVL 227 (617)
Q Consensus 158 l~~~~~~~i~~-~---~l~~l~---~~~~~L~~L~l~~~~~i~~~~l~~--l~~~~~~L~~L~l~~~~~~~~-~~l~~~~ 227 (617)
|+ ++..++. . .+..+. ..+++|++|+++++ .++ .+.. ....+++|++|++++|. ++. ..+..++
T Consensus 522 Ls--~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~ 595 (876)
T 4ecn_A 522 IA--CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNV 595 (876)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTS
T ss_pred Cc--CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCC
Confidence 95 3432665 2 222222 23568888888887 554 2322 33467888888888873 432 2456677
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCC-CCeEEeccCCCCHHHHHHHHhcC--CCCCEEEccCCCCCC
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVGPITISRLLTSS--KSLKVLCALNCPVLE 292 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~l~~c~~~~ 292 (617)
+|++|++++| .++ .+..-...+++ |++|++++|.++ .++..+... ++|+.|++++|.+.+
T Consensus 596 ~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 596 KLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cceEEECcCC-ccc--cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCC
Confidence 8888888886 333 22222345666 888888887665 233333333 236677777666543
No 123
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.68 E-value=2.9e-10 Score=112.50 Aligned_cols=172 Identities=10% Similarity=0.101 Sum_probs=119.2
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|++|+++++..... ....+++|++|+++++. ++... ......+++|+.|+++ ++ .++......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRV-SCSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLK--LN-EIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEE-EECCCSSCEEEECCSSC-CCSGG-GBCTGGGSSEEEEECT--TS-CCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCc-CccccCCCCEEECCCCC-CCCcc-chhhhccCCCCEEECC--CC-CCCcccHHHHhhccCcCC
Confidence 4455555555433321 12246788899988876 44321 1122457899999996 34 666544445555689999
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
+|+++++ .++.- ... ..+++|++|++++| .++. ..+..+++|++|++++| .++. +......+++|+.|++
T Consensus 173 ~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 173 HLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDL 244 (317)
T ss_dssp EEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEEC
T ss_pred EEECCCC-cCccc--ccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEc
Confidence 9999998 55432 111 14799999999999 4554 34788999999999998 4542 2223467899999999
Q ss_pred ccCCCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 261 SRTDVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
++|.++...++..+..+++|+.+++.++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999997778888888988888887744
No 124
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.67 E-value=4.2e-09 Score=112.90 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=112.5
Q ss_pred hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 122 LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 122 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..+++|+.|+++++. +.+. .. ...+++|+.|+|+ +| .+++.. . ...+++|+.|+|++| .++. +.. .
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls--~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~--l~~-l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLN--GN-KLTDIK--P-LTNLKNLGWLFLDEN-KIKD--LSS-L 105 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECT--TS-CCCCCG--G-GGGCTTCCEEECCSS-CCCC--CTT-S
T ss_pred hcCCCCCEEECcCCC-CCCC--hH-HccCCCCCEEEee--CC-CCCCCh--h-hccCCCCCEEECcCC-CCCC--Chh-h
Confidence 367899999999887 4332 12 4569999999996 34 454322 1 456899999999998 5554 222 3
Q ss_pred hcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 202 KLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
..+++|++|++++|..-....+..+++|+.|++++| .++.. .....+++|+.|++++|.++... + +..+++|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~ 178 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ 178 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred ccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCCCC
Confidence 467999999999995444466889999999999998 44432 33567999999999999876532 2 67899999
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|+|++|.+...
T Consensus 179 ~L~Ls~N~i~~l 190 (605)
T 1m9s_A 179 NLYLSKNHISDL 190 (605)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECcCCCCCCC
Confidence 999999976553
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.67 E-value=6.6e-10 Score=116.60 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=52.1
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|+++++ .++...-. ....+++|++|++++| .++. ..+ ..+++|++|++++|. ++.. .. ...++
T Consensus 119 l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~-~~~l~ 191 (487)
T 3oja_A 119 GQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KG-QVVFA 191 (487)
T ss_dssp CSSCEEEECCSS-CCCSGGGB-CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--EC-CCCCT
T ss_pred cCCCCEEECCCC-CCCCCCch-hhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cc-cccCC
Confidence 455666666655 33321111 1123466666666666 3332 222 245666666666652 3211 00 11356
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+|++|++++|.++.. +..+..+++|+.|++++|.+.
T Consensus 192 ~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 192 KLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp TCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCC
T ss_pred CCCEEECCCCCCCCC--CHhHcCCCCccEEEecCCcCc
Confidence 666666666655431 112345666666666666544
No 126
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.66 E-value=4.6e-11 Score=117.93 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=75.1
Q ss_pred hCCCceEEEecC-CCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 101 RCMNLQKLRFRG-AESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 101 ~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
.+++|++|++++ +......+ ...+++|++|+++++. ++.. +......+++|++|++++ + .++.. +......
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~Ls~--N-~l~~~-~p~~~~~ 147 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA-IPDFLSQIKTLVTLDFSY--N-ALSGT-LPPSISS 147 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE-CCGGGGGCTTCCEEECCS--S-EEESC-CCGGGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc-CCHHHhCCCCCCEEeCCC--C-ccCCc-CChHHhc
Confidence 346666666664 33221111 1245666666666554 2210 111223456666666641 2 22211 0111223
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCC-CCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~-~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|+++++ .++......+. .++ +|++|++++|. ++ ...+..++ |++|++++|. ++.. .......++
T Consensus 148 l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~ 221 (313)
T 1ogq_A 148 LPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDK 221 (313)
T ss_dssp CTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTS
T ss_pred CCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCC
Confidence 566666666655 33311111122 223 56666666552 22 12333333 5555555541 2110 111223455
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
+|+.|++++|.++... +. +..+++|++|++++|.+
T Consensus 222 ~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CCSEEECCSSEECCBG-GG-CCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCceeeec-Cc-ccccCCCCEEECcCCcc
Confidence 5666666655443211 11 23455666666665554
No 127
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.66 E-value=5.1e-10 Score=108.33 Aligned_cols=182 Identities=14% Similarity=0.012 Sum_probs=101.5
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++... ......+++|++|+++. + .++...... ...+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l 123 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVE--T-NLASLENFP-IGHL 123 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTT--S-CCCCSTTCC-CTTC
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccC-hhhhcCCccccEEECCC--C-CccccCchh-cccC
Confidence 35677777777775443211 2256777777777765 32211 11224567777777752 3 332211001 2346
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCC----eecccCCCCCCHHHHHHHHhc
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVR----FLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~----~L~l~~~~~i~~~~l~~l~~~ 251 (617)
++|++|+++++ .++...+......+++|++|++++| .++. ..+..+++|+ +|++++| .++... .-...
T Consensus 124 ~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~--~~~~~ 198 (276)
T 2z62_A 124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQ--PGAFK 198 (276)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEEC--TTSSC
T ss_pred CCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCC-cccccC--ccccC
Confidence 77788887776 4432112222345677888888777 3433 3344444444 6777775 332111 00112
Q ss_pred CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
..+|+.|++++|.++... ..++..+++|+.|++++|+...+.
T Consensus 199 ~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 199 EIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCcccEEECCCCceeecC-HhHhcccccccEEEccCCcccccC
Confidence 347999999998765322 334567899999999988866554
No 128
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.65 E-value=4.2e-09 Score=104.75 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=84.6
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++... ....++|++|++++ + .++...... ...+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~~L~l~~--n-~l~~~~~~~-~~~l 144 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP----EKMPKTLQELRVHE--N-EITKVRKSV-FNGL 144 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC----SSCCTTCCEEECCS--S-CCCBBCHHH-HTTC
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC----hhhcccccEEECCC--C-cccccCHhH-hcCC
Confidence 34556666666554332111 1145566666665554 22100 01124566666642 2 333211111 2335
Q ss_pred CCCCeeeccCccCCcHHH-HHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 179 PKLKKLRLSGIRDICGDA-INALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
++|++|+++++ .++..+ .......+++|++|++++| .++.......++|++|++++| .++... ......+++|++
T Consensus 145 ~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 220 (330)
T 1xku_A 145 NQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN-KITKVD-AASLKGLNNLAK 220 (330)
T ss_dssp TTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTS-CCCEEC-TGGGTTCTTCCE
T ss_pred ccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCC-cCCccC-HHHhcCCCCCCE
Confidence 66666666665 332211 1112234566666666665 233211112256677777665 233211 112345677777
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
|++++|.++... ...+..+++|+.|++++|.+.
T Consensus 221 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 221 LGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp EECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCS
T ss_pred EECCCCcCceeC-hhhccCCCCCCEEECCCCcCc
Confidence 777776654322 123345777777777777644
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=2.1e-09 Score=95.40 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.. .....+++|++|++++|. ++. ..+..+++|++|++++| .+++.........+++
T Consensus 48 l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 48 FVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC
T ss_pred CCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC
Confidence 455555555555 33321 122334556666666553 222 22344666666666665 3332111122345666
Q ss_pred CCeEEeccCCCCHHH--HHHHHhcCCCCCEEEccCCCC
Q 007131 255 LVGLDVSRTDVGPIT--ISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 255 L~~L~l~~~~~~~~~--l~~~~~~~~~L~~L~l~~c~~ 290 (617)
|++|++++|.++... ....+..+++|++|++++|..
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777666543221 123556677777777777764
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=8.6e-09 Score=89.30 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=86.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
.++|++|+++++ .+++..+......+++|++|++++|. ++. ..+..+++|++|++++| .++.. +......+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCC
Confidence 468999999988 56633344444678999999999994 444 56788999999999998 44432 455566799999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++++|.++.......+..+++|++|++++|++...
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999999988755456678899999999999975543
No 131
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.62 E-value=3.1e-09 Score=108.46 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=15.9
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCR 136 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 136 (617)
.+++|+.|+++++...... ....+++|++|+++++.
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC
Confidence 3455555555554332211 11134555555555543
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.62 E-value=3.8e-09 Score=93.65 Aligned_cols=131 Identities=27% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
++|++|++++|. +++..+......+++|+.|++++ | .++.. .....+++|++|+++++ .++.. +..+...+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~--n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLIN--V-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEES--S-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcC--C-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 556666666554 33222222234466777777752 3 34332 22234667777777776 44332 23344456
Q ss_pred CCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHH-HHHHHhcCCCCCeEEeccCCC
Q 007131 205 PNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGV-VSQVWHKLPKLVGLDVSRTDV 265 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~-l~~l~~~~~~L~~L~l~~~~~ 265 (617)
++|++|++++| .+++ ..+..+++|++|++++|.-..... .......+++|++|+++++..
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77777777777 3443 345677778888887763221111 123456678888888777643
No 133
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.61 E-value=4e-10 Score=111.17 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred HhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 100 SRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
..+++|++|+++++......+ ...+++|++|+++++. ++.. +......+++|++|+++ ++ .++......+..
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~L~--~N-~l~~~~p~~l~~- 171 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGT-LPPSISSLPNLVGITFD--GN-RISGAIPDSYGS- 171 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESC-CCGGGGGCTTCCEEECC--SS-CCEEECCGGGGC-
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCc-CChHHhcCCCCCeEECc--CC-cccCcCCHHHhh-
Confidence 457899999999987753322 2378999999999986 3211 12234568999999996 34 454221222333
Q ss_pred CC-CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCC--CCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CP-KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN--VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~-~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
++ +|++|+++++ .++......+ ..++ |++|++++|.. .....+..+++|++|++++|. ++... .. ...+++
T Consensus 172 l~~~L~~L~L~~N-~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~ 245 (313)
T 1ogq_A 172 FSKLFTSMTISRN-RLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKN 245 (313)
T ss_dssp CCTTCCEEECCSS-EEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTT
T ss_pred hhhcCcEEECcCC-eeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCC
Confidence 55 9999999998 4442211222 2344 99999999842 223556889999999999984 33111 11 356899
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++|++++|.++.. ++..+..+++|+.|++++|.+.+
T Consensus 246 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 246 LNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccc
Confidence 99999999987533 24456779999999999997553
No 134
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.61 E-value=7.1e-10 Score=119.43 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 102 CMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
+++|++|+++++..... .....+++|++|+++++. ++...-. ...+++|+.|+++ ++ .++..........
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~--~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQ--HS-NLKQMSEFSVFLS 419 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECT--TS-EEESCTTSCTTTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEcc--CC-ccccccchhhhhc
Confidence 34555555555443321 122245666666666654 2110000 2346677777774 23 2221111112345
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|++++| .++... ......+++|++|++++|. +++ ..+..+++|++|++++| .++... ......++
T Consensus 420 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~ 494 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLS 494 (570)
T ss_dssp CTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCT
T ss_pred CCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCC-hhhhhccc
Confidence 789999999988 443321 1233467999999999994 442 35678999999999998 444321 12235789
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|++|++++|.++... +..+..+++|+.|++++|+...+.
T Consensus 495 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 495 SLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence 9999999998765432 344567999999999999877654
No 135
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.60 E-value=1.8e-09 Score=105.14 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=120.8
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++++.+++.++.... ++....++++.|+++++. ++... ......+++|+.|+|++ + .++... .. ..+++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~--~~-~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDR--A-ELTKLQ--VD-GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTT--S-CCCEEE--CC-SCCTTC
T ss_pred cCCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCC--C-ccCccc--CC-CCCCcC
Confidence 4678999998765432 222235799999999987 44321 12345689999999963 3 454321 11 468999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|+++++ .++. +......+++|++|++++| .++. ..+..+++|++|++++| .++.. .......+++|+.|
T Consensus 80 ~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEE
Confidence 99999998 5542 2223356799999999998 4443 45788999999999998 44321 12223568999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++++|.++.-. ..++..+++|+.|++++|.+.
T Consensus 154 ~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 154 SLANNNLTELP-AGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccC-HHHhcCcCCCCEEECCCCcCC
Confidence 99998876321 234567899999999999765
No 136
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.59 E-value=2.2e-09 Score=102.23 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=91.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
++++.|+++++. ++... ......+++|++|+|++ + .++.... .....+++|++|+++++ .++.-. ......+
T Consensus 35 ~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDY--N-QLQTLSA-GVFDDLTELGTLGLANN-QLASLP-LGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT--S-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTTTC
T ss_pred CCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCC--C-cCCccCH-hHhccCCcCCEEECCCC-cccccC-hhHhccc
Confidence 456666666554 22211 01123466777777742 2 3332111 11234677788887776 443211 1123456
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... +..+..+++|+
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 182 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQ 182 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccC-HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCC
Confidence 88888888887 3443 33567888888888887 443211 112356788999999998765322 23456789999
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|++++|+...+
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 999999986655
No 137
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.59 E-value=5.4e-09 Score=112.92 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=36.7
Q ss_pred CCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
+++|++|+|++|....... ...+++|++|+++++. ++.. ...++..+++|+.|+|++ + .++...... ...++
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l-~~~~~~~l~~L~~L~Ls~--N-~l~~~~~~~-~~~l~ 171 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSL-PRGIFHNTPKLTTLSMSN--N-NLERIEDDT-FQATT 171 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS--S-CCCBCCTTT-TTTCT
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCC-CHHHhccCCCCCEEEeeC--C-cCCCCChhh-hhcCC
Confidence 4555666665554332111 1245566666666554 3210 111223456666666642 2 232211111 12356
Q ss_pred CCCeeeccCc
Q 007131 180 KLKKLRLSGI 189 (617)
Q Consensus 180 ~L~~L~l~~~ 189 (617)
+|++|+++++
T Consensus 172 ~L~~L~L~~N 181 (597)
T 3oja_B 172 SLQNLQLSSN 181 (597)
T ss_dssp TCCEEECTTS
T ss_pred cCcEEECcCC
Confidence 6666666665
No 138
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.59 E-value=1.2e-09 Score=121.66 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++|++|+++++..........+++|++|+++++. ++.. +.. ...+++|++|+++ +| .+++..... ...++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls--~n-~l~~~~~~~-l~~l~ 247 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDIS--GN-KLSGDFSRA-ISTCT 247 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECC--SS-CCCSCHHHH-TTTCS
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECc--CC-cCCCcccHH-HhcCC
Confidence 3445555555555433221111345555555555554 2110 011 3345556666663 23 333222222 23355
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+|++|++++| .++.. +.. . .+++|++|++++|. ++. ..+ ..+++|++|++++|. ++.. +......+++|
T Consensus 248 ~L~~L~Ls~n-~l~~~-~~~-~-~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L 320 (768)
T 3rgz_A 248 ELKLLNISSN-QFVGP-IPP-L-PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH-FYGA-VPPFFGSCSLL 320 (768)
T ss_dssp SCCEEECCSS-CCEES-CCC-C-CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE-EEEC-CCGGGGGCTTC
T ss_pred CCCEEECCCC-cccCc-cCc-c-ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc-CCCc-cchHHhcCCCc
Confidence 5666655555 22210 000 0 33445555554442 111 111 223555555555542 1100 01112345566
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
++|++++|.++...-...+..+++|++|++++|..
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666665432111112234456666666665543
No 139
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.59 E-value=5.6e-09 Score=109.64 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=55.0
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+|+++....... ...+++|++|+++++. ++.. .......+++|+.|++++ + .++...... ...+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l 151 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGD--N-DLVYISHRA-FSGL 151 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECC--T-TCCEECTTS-STTC
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCC--C-ccceeChhh-ccCC
Confidence 34556666666554322111 1245566666666554 2211 011123455666666641 2 222111111 1235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGT 237 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~ 237 (617)
++|++|+++++ .++.-.. .....+++|+.|++++|. ++. ..+..+++|++|++++|
T Consensus 152 ~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 152 NSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCC
Confidence 56666666655 3332111 112345566666665552 222 23344555555555544
No 140
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.58 E-value=5.1e-09 Score=110.00 Aligned_cols=180 Identities=20% Similarity=0.207 Sum_probs=86.2
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++...... ....+++|++|+++++. ++... ......+++|+.|++++ + .++...... ...+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-l~~l 175 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEK--C-NLTSIPTEA-LSHL 175 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEES--C-CCSSCCHHH-HTTC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCC--C-cCcccChhH-hccc
Confidence 4566777777766543221 11245666666666654 22110 01123456666666642 2 232211111 2235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCC------------------------CCceEeecCCCCCC---HHHHhcCcCCCe
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCP------------------------NLTDIGFLDCLNVD---EVALGNVLSVRF 231 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~------------------------~L~~L~l~~~~~~~---~~~l~~~~~L~~ 231 (617)
++|+.|+++++ .++.... .....++ +|++|++++| .++ ...+..+++|++
T Consensus 176 ~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 176 HGLIVLRLRHL-NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCCEEEEESC-CCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCE
T ss_pred CCCcEEeCCCC-cCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCe
Confidence 55555555554 2221000 0111233 5555555555 222 234566677777
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|. ++... ......+++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 253 L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 253 LNLSYNP-ISTIE-GSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EECCSSC-CCEEC-TTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSSCCSC
T ss_pred eECCCCc-CCccC-hhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCCcCce
Confidence 7777652 32111 111245667777777776554321 2234457777777777775443
No 141
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=1.2e-08 Score=97.74 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=106.3
Q ss_pred hCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.+++|++|+++++..........+++|++|+++++. +++..- ...+++|+.|++++ + .+++ +..+.. ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~---l~~l~~L~~L~L~~--N-~l~~--l~~~~~--~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP---LKDLTKLEELSVNR--N-RLKN--LNGIPS--AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCS--S-CCSC--CTTCCC--SS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh---hccCCCCCEEECCC--C-ccCC--cCcccc--Cc
Confidence 358899999999865432222378999999999986 544222 56799999999963 3 4543 112222 89
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|++|+++++ .++.- .. ...+++|++|++++|. +++ ..+..+++|++|++++| .+++. .....+++|+.|+
T Consensus 108 L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWID 178 (263)
T ss_dssp CCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEE
T ss_pred ccEEEccCC-ccCCC--hh-hcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEe
Confidence 999999998 66542 22 4468999999999994 554 56788999999999998 45443 3346789999999
Q ss_pred eccCCCC
Q 007131 260 VSRTDVG 266 (617)
Q Consensus 260 l~~~~~~ 266 (617)
+++|.++
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 9997653
No 142
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.57 E-value=3.6e-09 Score=115.09 Aligned_cols=179 Identities=9% Similarity=0.139 Sum_probs=100.8
Q ss_pred HHhCCCceEEEecCCCCccH-----------------HHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 99 ASRCMNLQKLRFRGAESADS-----------------IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
...+++|++|+|+++.+... ++.. .+++|++|++++|..... +......+++|+.|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEE
Confidence 34567888898888876552 2221 478888888888763221 222334578888888
Q ss_pred EcCCCCCCCCH-HHHHHHHh-----cCCCCCeeeccCccCCcHHHHHH--HHhcCCCCceEeecCCCCCC-H-HHHhcCc
Q 007131 158 LGPDFCERITS-DAVKAIAL-----CCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVD-E-VALGNVL 227 (617)
Q Consensus 158 l~~~~~~~i~~-~~l~~l~~-----~~~~L~~L~l~~~~~i~~~~l~~--l~~~~~~L~~L~l~~~~~~~-~-~~l~~~~ 227 (617)
++ ++..++. .....+.. .+++|++|+++++ .++ .+.. ....+++|++|++++|. ++ . ..+..++
T Consensus 280 Ls--~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~ 353 (636)
T 4eco_A 280 VA--CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI 353 (636)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEE
T ss_pred Cc--CCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCC
Confidence 85 3533665 22222322 2478888888887 554 2322 33467888888888873 33 1 1445556
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCC-CCeEEeccCCCCHHHHHHHHhcC--CCCCEEEccCCCC
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVGPITISRLLTSS--KSLKVLCALNCPV 290 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~l~~c~~ 290 (617)
+|++|++++| .++ .+..-...+++ |++|++++|.++ .++..+... ++|+.|++++|.+
T Consensus 354 ~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 354 KLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcC
Confidence 6666666665 222 11111234555 666666665544 222222222 2455555555544
No 143
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=1.4e-08 Score=112.90 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=80.8
Q ss_pred hCCCceEEEecCCCCccHHHH--hcCCCccEEeccCCCCCCH-H---HHHHHH---hcCCCcceEEEcCCCCCCCCHHHH
Q 007131 101 RCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITD-A---TLSVIV---ARHEALESLQLGPDFCERITSDAV 171 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~---~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l 171 (617)
.+++|++|+|++|.+...++. ..+++|+.|+++++..++. . .+..+. ..+++|+.|+|++ + .++ .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~--N-~L~--~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--N-NLE--EF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS--S-CCC--BC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC--C-cCC--cc
Confidence 568899999999876544332 3788999999999864655 1 132222 3566999999963 3 454 23
Q ss_pred HH--HHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcC-CCeecccCC
Q 007131 172 KA--IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLS-VRFLSVAGT 237 (617)
Q Consensus 172 ~~--l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~-L~~L~l~~~ 237 (617)
.. ....+++|++|+++++ .++ .+. ....+++|++|++++|. ++. ..+..+++ |++|++++|
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 22 3345788888888887 454 222 23456777777777773 332 23455566 667766665
No 144
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.55 E-value=2.3e-08 Score=106.27 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH-H---H
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE-V---A 222 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~---~ 222 (617)
..+++|++|+++ ++ .+++.....+ ..+++|++|+++++ .++. ..+......+++|++|++++|. ++. . .
T Consensus 321 ~~l~~L~~L~Ls--~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFS--NN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECC--SS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCS
T ss_pred hhCCcccEEEeE--CC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccch
Confidence 356778888885 23 4444222222 34678888888877 4543 2333344567888888888874 332 1 2
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+++|++|++++| .++... ...+ ++|+.|++++|.++ .++..+..+++|+.|++++|.+.
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence 456678888888887 344221 2233 57888888888776 34443446888888888888654
No 145
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.52 E-value=6.3e-09 Score=103.57 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|+.|++++|.++ .++..+..+++|+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIE-NGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCC-TTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCC
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCC-hhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCC
Confidence 57777777777 3333 34677888888888887 333211 112356888999999888776 3344456788899
Q ss_pred EEEccCCCCCC
Q 007131 282 VLCALNCPVLE 292 (617)
Q Consensus 282 ~L~l~~c~~~~ 292 (617)
.|++++|++..
T Consensus 268 ~L~l~~N~l~~ 278 (332)
T 2ft3_A 268 VVYLHTNNITK 278 (332)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCc
Confidence 99998887543
No 146
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.52 E-value=3.8e-09 Score=101.75 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=116.5
Q ss_pred CceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCe
Q 007131 104 NLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKK 183 (617)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~ 183 (617)
+.+.+++++..... ++....++|++|+++++. ++... ......+++|++|++++ + .++... ..+...+++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~i~-~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLND--N-KLQTLP-AGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCCTTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCS--S-CCSCCC-TTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCc-cCCCCCCCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCC--C-ccCeeC-hhhhcCCCCCCE
Confidence 46788888765442 222234689999999986 43311 11234689999999963 3 443211 112245899999
Q ss_pred eeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 184 LRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 184 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
|+++++ .++.-.. .....+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|++|++
T Consensus 90 L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 90 LWVTDN-KLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRL 164 (270)
T ss_dssp EECCSS-CCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEEC
T ss_pred EECCCC-cCCcCCH-hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEe
Confidence 999988 4543111 233467999999999984 433 45688999999999998 343211 122456899999999
Q ss_pred ccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 261 SRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|.++... ...+..+++|++|++++|.+.
T Consensus 165 ~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 165 YNNQLKRVP-EGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCSCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEeC-hhHhccCCCcCEEECCCCcCC
Confidence 998765422 223557899999999999754
No 147
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.51 E-value=3.3e-09 Score=116.83 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=120.6
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHH---HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
+.++++...+..-. ......+++|+.|+++++...... ....+++|++|+++++. ++... ......+++|+.|+
T Consensus 384 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 384 HILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLT-RNSFALVPSLQRLM 460 (680)
T ss_dssp CEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECC-TTTTTTCTTCCEEE
T ss_pred ceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeC-hhhhhcCcccccch
Confidence 45555554443211 112345688999999988765322 22367899999999886 22110 11223578899999
Q ss_pred EcCCCCCCCCH-HHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH-----------HHhc
Q 007131 158 LGPDFCERITS-DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV-----------ALGN 225 (617)
Q Consensus 158 l~~~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-----------~l~~ 225 (617)
++. + .+.. .........+++|++|+++++ .++.-. ......+++|++|++++| .++.. .+..
T Consensus 461 l~~--n-~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 461 LRR--V-ALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp CTT--S-CCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTT
T ss_pred hcc--c-cccccccCCcccccCCCCCEEECCCC-CCCcCC-hhhhccccccCEEeCCCC-CccccchhhccCCcchhhcC
Confidence 853 3 2211 011111245788888988887 444211 112345788888888887 34431 2567
Q ss_pred CcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 226 VLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++|++|++++| .++.-. .....++++|+.|++++|.++.-. +..+.++++|+.|++++|.+.+..
T Consensus 535 l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 535 LSHLHILNLESN-GFDEIP-VEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCEEECCCC-CCCCCC-HHHcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccC
Confidence 788888888887 343100 122456788888888887765321 234456788888888888655443
No 148
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.46 E-value=1.7e-09 Score=102.18 Aligned_cols=177 Identities=10% Similarity=-0.002 Sum_probs=99.9
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+++++....... ...+++|++|+++++..++... ......+++|++|+++ +|+.++.... .....+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~--~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIR--NTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEE--EETTCCEECT-TSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECC--CCCCeeEcCH-HHhCCCCC
Confidence 367888887775543211 2256788888887774232211 1122457788888885 2345542111 11234678
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCc---eEeecCCCCCCH---HHHhcCcCCC-eecccCCCCCCHHHHHHHHhcCC
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLT---DIGFLDCLNVDE---VALGNVLSVR-FLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~---~L~l~~~~~~~~---~~l~~~~~L~-~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
|++|+++++ .++. +.. ...+++|+ +|++++|..++. ..+..+++|+ +|++++| .++.-. ...... +
T Consensus 107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~-~~~~~~-~ 179 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQ-GYAFNG-T 179 (239)
T ss_dssp CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEEC-TTTTTT-C
T ss_pred CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccC-HhhcCC-C
Confidence 888888876 3432 222 33456676 888887743443 3466778888 8888776 333111 111122 6
Q ss_pred CCCeEEeccCC-CCHHHHHHHHhcC-CCCCEEEccCCCCC
Q 007131 254 KLVGLDVSRTD-VGPITISRLLTSS-KSLKVLCALNCPVL 291 (617)
Q Consensus 254 ~L~~L~l~~~~-~~~~~l~~~~~~~-~~L~~L~l~~c~~~ 291 (617)
+|+.|++++|. ++... ...+.++ ++|+.|++++|.+.
T Consensus 180 ~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCccc
Confidence 78888888873 54221 2334556 78888888877654
No 149
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.42 E-value=1.2e-07 Score=102.91 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=64.5
Q ss_pred hcCCCCCeeeccCccCCcHH----------------HHHHHHh--cCCCCceEeecCCCCCC--HHHHhcCcCCCeeccc
Q 007131 176 LCCPKLKKLRLSGIRDICGD----------------AINALAK--LCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVA 235 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~----------------~l~~l~~--~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~ 235 (617)
..+++|++|+|+++ .++.. .+..-.. .+++|++|++++|...+ ...+..+++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 34677777777766 45441 0111112 56677777777763222 2455667777777777
Q ss_pred CCCCCCHHHHHHHH------hcCCCCCeEEeccCCCCHHHHHH--HHhcCCCCCEEEccCCCCC
Q 007131 236 GTSNMKWGVVSQVW------HKLPKLVGLDVSRTDVGPITISR--LLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 236 ~~~~i~~~~l~~l~------~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~l~~c~~~ 291 (617)
+|..++...+..-. ..+++|++|++++|.++ .++. .+..+++|++|++++|.+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 76435541222211 23467777777777665 3444 5566777777777777644
No 150
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=1e-07 Score=102.32 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
.++|+.|+++++ .++. +...+++|++|++++| .++.-. ..+++|++|++++| .++. +...+++|++
T Consensus 200 ~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp-~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~ 265 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTSLP-VLPSELKELMVSGN-RLTS-----LPMLPSGLLS 265 (622)
T ss_dssp CTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSS-CCSC-----CCCCCTTCCE
T ss_pred cchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCcCC-CCCCcCcEEECCCC-CCCc-----CCcccccCcE
Confidence 356666666655 3331 1223477888888877 444321 45688899999887 4431 2226788999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++++|.++ .++..+.++++|+.|++++|++.+..
T Consensus 266 L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 266 LSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp EECCSSCCC--SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred EeCCCCCCC--cCCHHHhhccccCEEEecCCCCCCcC
Confidence 999998877 44555678899999999999865443
No 151
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=4.6e-08 Score=87.30 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=66.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcC
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNV 226 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~ 226 (617)
+++|+.|++++ + .++. +..+...+++|++|+++++ .++. +. -...+++|++|++++| .++. ..+..+
T Consensus 18 ~~~L~~L~l~~--n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~--~~-~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRG--Y-KIPV--IENLGATLDQFDAIDFSDN-EIRK--LD-GFPLLRRLKTLLVNNN-RICRIGEGLDQAL 87 (176)
T ss_dssp TTSCEEEECTT--S-CCCS--CCCGGGGTTCCSEEECCSS-CCCE--EC-CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred cCCceEEEeeC--C-CCch--hHHhhhcCCCCCEEECCCC-CCCc--cc-ccccCCCCCEEECCCC-cccccCcchhhcC
Confidence 44555566542 2 3331 1223333346666666665 3433 11 1234566667777666 3433 223566
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH--HHHHHHhcCCCCCEEEccCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI--TISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++|++++| .+++-.-......+++|++|++++|.++.. .-..++..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777777666 333211011234567777777777654321 112345667888888887765
No 152
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.37 E-value=8.6e-09 Score=102.61 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++....... ...+++|++|+++++. ++... ......+++|++|++++ + .++. +. ....++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~--l~--~~~~~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIH-EKAFSPLRKLQKLYISK--N-HLVE--IP--PNLPSS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGSTTCTTCCEEECCS--S-CCCS--CC--SSCCTT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccC-HhHhhCcCCCCEEECCC--C-cCCc--cC--cccccc
Confidence 456666666654332111 1245566666666554 33210 11223456666666642 2 2321 00 011245
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-----HHHhc--------------------CcCCCeeccc
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-----VALGN--------------------VLSVRFLSVA 235 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-----~~l~~--------------------~~~L~~L~l~ 235 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+.. .++|++|+++
T Consensus 125 L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 125 LVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp CCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred CCEEECCCC-ccCccC-HhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECC
Confidence 666666555 332110 011234455666666555 2221 11122 2466666666
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 236 GTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 236 ~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+| .++... ......+++|++|++++|.++... +..+..+++|+.|++++|.+.
T Consensus 202 ~n-~i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 202 HN-KIQAIE-LEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SS-CCCCCC-TTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCC
T ss_pred CC-cCCccC-HHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCe
Confidence 65 222111 011245677888888777654321 123456778888888877644
No 153
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.36 E-value=9.1e-06 Score=72.36 Aligned_cols=124 Identities=11% Similarity=0.214 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC---CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCC
Q 007131 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC---PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNV 218 (617)
Q Consensus 142 ~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~---~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 218 (617)
.+..+....+.|+.|+|+ ++..+++.+...++..+ ..|++|+|++| .+++.+...+++
T Consensus 32 ~l~~ll~~n~~L~~L~L~--~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~---------------- 92 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNIN--NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------------- 92 (197)
T ss_dssp HHHHHHTTCSSCCEEECT--TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH----------------
T ss_pred HHHHHHhcCCCccEEECC--CCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH----------------
Confidence 355555555566666663 22355555555444322 35555555555 555555433331
Q ss_pred CHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcC---CCCCeEEeccC---CCCHH---HHHHHHhcCCCCCEEEccCC
Q 007131 219 DEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL---PKLVGLDVSRT---DVGPI---TISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~---~~L~~L~l~~~---~~~~~---~l~~~~~~~~~L~~L~l~~c 288 (617)
.+..-+.|++|++++| .|++.+...++..+ +.|++|+++++ .+++. .+.+.+..-+.|+.|+++.+
T Consensus 93 ---aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 93 ---LIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp ---HHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred ---HHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 1122244555555554 45555555544322 34666666532 44543 24444555566777766644
No 154
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.36 E-value=2.8e-08 Score=94.45 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=104.2
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++....... ...+++|++|+++++. ++.. .......+++|+.|+|++ + .++.... .....+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELGTLGLAN--N-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTT--S-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCcc-CHhHhccCCcCCEEECCC--C-cccccCh-hHhcccCC
Confidence 579999999986654222 2368999999999986 4431 112235689999999963 3 4542211 12245799
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++
T Consensus 109 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~ 183 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQT 183 (251)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCE
T ss_pred CCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCE
Confidence 999999998 554211 112346799999999998 4443 35788999999999998 343211 123456899999
Q ss_pred EEeccCCCC
Q 007131 258 LDVSRTDVG 266 (617)
Q Consensus 258 L~l~~~~~~ 266 (617)
|++++|.++
T Consensus 184 L~l~~N~~~ 192 (251)
T 3m19_A 184 ITLFGNQFD 192 (251)
T ss_dssp EECCSCCBC
T ss_pred EEeeCCcee
Confidence 999998764
No 155
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.36 E-value=1.6e-08 Score=111.39 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=47.9
Q ss_pred cCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHH-------HHHHhcCCCCCeEEeccCCCCHHHHHH
Q 007131 203 LCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVV-------SQVWHKLPKLVGLDVSRTDVGPITISR 272 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l-------~~l~~~~~~L~~L~l~~~~~~~~~l~~ 272 (617)
.+++|++|++++|. ++ +..+..+++|++|++++| .++...- .....++++|+.|++++|.++.-. ..
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VE 554 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TT
T ss_pred cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HH
Confidence 45667777776662 32 234566677777777765 2321100 001345677777777776655211 12
Q ss_pred HHhcCCCCCEEEccCCCCC
Q 007131 273 LLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 273 ~~~~~~~L~~L~l~~c~~~ 291 (617)
.+.++++|+.|++++|...
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TTTTCTTCCEEECCSSCCC
T ss_pred HcccccCcceeECCCCCCC
Confidence 3456777777777777544
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.35 E-value=4.8e-06 Score=74.16 Aligned_cols=89 Identities=10% Similarity=0.247 Sum_probs=68.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHh---cCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVA---RHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 196 (617)
..+.|++|+|+++..+.+.+...++. ....|+.|+|+ +| .+++.+...++. .-+.|++|+|+++ .|++.+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~--~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA--NT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT--TS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc--CC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 67899999999875699988666654 55689999996 34 899998877664 3478999999998 899999
Q ss_pred HHHHHhcC---CCCceEeecCC
Q 007131 197 INALAKLC---PNLTDIGFLDC 215 (617)
Q Consensus 197 l~~l~~~~---~~L~~L~l~~~ 215 (617)
...+++.+ +.|++|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 88887442 34666666543
No 157
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.34 E-value=1.2e-06 Score=98.84 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=140.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.++.+|..|+.+|..+....... ..-.-.+.++.++.++.+++++++..|+.+|..++.....
T Consensus 177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--------~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--------LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH--------HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 78888888889999999999999875432111 0011235678888889889999999999999999874321
Q ss_pred H--HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHH-------HH-------------------------
Q 007131 462 A--KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA-------IA------------------------- 507 (617)
Q Consensus 462 ~--~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~-------i~------------------------- 507 (617)
. ..+ .+.++.++.++.+.+++++..|+.++..++.....+.. ++
T Consensus 249 ~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 249 RLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1 111 12467777788888888888888888887753211110 00
Q ss_pred --------------------------hcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH
Q 007131 508 --------------------------DAGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (617)
Q Consensus 508 --------------------------~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~ 560 (617)
....++.++..+.. -.+.+..++..|+.+|.+++........-.-.+.++.++
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 00112222222221 134567888888888888886543211111234567788
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.++.+++ +.++..|+++|.+++....... ....-.+.++.|++.+.++++.|
T Consensus 407 ~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~---~~~~~~~ll~~L~~~L~d~~~~v 458 (852)
T 4fdd_A 407 QCLSDKK-ALVRSITCWTLSRYAHWVVSQP---PDTYLKPLMTELLKRILDSNKRV 458 (852)
T ss_dssp HHTTCSS-HHHHHHHHHHHHHTHHHHHHSC---TTTTHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCCC-HHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHhCCCHHH
Confidence 8887764 8999999999999987422110 11112467888888887765544
No 158
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.31 E-value=2.1e-08 Score=91.54 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=69.5
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcC
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLS 228 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 228 (617)
.+++|+.|++++ + .++. +..+ ..+++|++|+++++ .++. +......+++|++|++++|..-+-..+..+++
T Consensus 46 ~l~~L~~L~ls~--n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALST--N-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HTTTCSEEECSE--E-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred cCCCCCEEECCC--C-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 356666666642 2 2222 1111 23566666666665 3331 22223334677777777763333345666777
Q ss_pred CCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH---------HHHHHHhcCCCCCEEE
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI---------TISRLLTSSKSLKVLC 284 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~~~~L~~L~ 284 (617)
|++|++++| .+++-........+++|++|++++|.++.. ....++..+++|+.|+
T Consensus 117 L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777776 344322222345677788888877654322 2234567788888887
No 159
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.30 E-value=6.3e-08 Score=109.02 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|++|++++|.++... +..+.++++
T Consensus 288 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~ 363 (844)
T 3j0a_A 288 TLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEK 363 (844)
T ss_dssp SCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCC
T ss_pred cCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCC-CCccC-HHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCC
Confidence 4566666666665 3332 345666777777777662 22110 112245677777777776553221 123456788
Q ss_pred CCEEEccCCCCC
Q 007131 280 LKVLCALNCPVL 291 (617)
Q Consensus 280 L~~L~l~~c~~~ 291 (617)
|+.|++++|.+.
T Consensus 364 L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 364 LQTLDLRDNALT 375 (844)
T ss_dssp CCEEEEETCCSC
T ss_pred CCEEECCCCCCC
Confidence 888888887654
No 160
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.29 E-value=1.7e-07 Score=100.45 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=78.9
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH----HH
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE----VA 222 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~----~~ 222 (617)
..+++|++|++++ + .+++..... ...+++|++|+++++ .++. ..+......+++|++|++++|. ++. ..
T Consensus 350 ~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQ--N-VFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCS--S-CCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCC
T ss_pred cCCCCceEEECCC--C-ccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhh
Confidence 3567777777752 3 444321111 234677888888877 4543 1223334466788888888773 332 23
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+++|++|++++| .++.. +...+ ++|+.|++++|.++ .++.-+..+++|+.|++++|.+.
T Consensus 424 ~~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 424 CAWAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC
T ss_pred hcCcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC
Confidence 566778888888876 34432 22334 57888888887765 23333336788888888887755
No 161
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.29 E-value=1.4e-08 Score=98.02 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+++++...... ....+++|++|+++++. ++... ......+++|++|++++ + .++...... ...+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~~~-~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTG--N-PIQSLALGA-FSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEEC-TTTTTTCTTCCEEECTT--C-CCCEECTTT-TTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccC-HHHccCCcCCCEEECCC--C-ccCccChhh-hcCCcc
Confidence 47999999988665322 22367899999999985 43211 11235688999999963 3 444322112 234789
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCH---HHHHHHHhcCCC
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKW---GVVSQVWHKLPK 254 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~---~~l~~l~~~~~~ 254 (617)
|++|+++++ .++.-.-. ....+++|++|++++|...+ ...+..+++|++|++++| .++. ..+..+ ..++.
T Consensus 102 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQMPL 177 (276)
T ss_dssp CCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHH-HTCTT
T ss_pred ccEEECCCC-CccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhh-hhccc
Confidence 999999987 44321111 13467899999999984322 356788999999999997 3432 222222 23444
Q ss_pred CC-eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LV-GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~-~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|. +|+++++.++... ... ....+|+.|++++|.+..
T Consensus 178 l~l~L~ls~n~l~~~~-~~~-~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQ-PGA-FKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCEEEECCSSCCCEEC-TTS-SCSCCEEEEECCSSCCSC
T ss_pred cceeeecCCCcccccC-ccc-cCCCcccEEECCCCceee
Confidence 44 8999998765321 111 234589999999987543
No 162
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.29 E-value=2.5e-06 Score=91.86 Aligned_cols=211 Identities=15% Similarity=0.091 Sum_probs=146.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+..++..+++.+|..|+.+|..++..... .......++.+..++.++++.+|..|+.+|..++..-..
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----------HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----------HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 7777777888999999999999998744321 233456788999999999999999999999998863221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. . .....++.+..++.+.+..++..|+.+|..++..... .......++.++.++. +.++.++..|+.+|..++
T Consensus 237 ~-~-~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 237 E-D-LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMK---DCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp H-H-HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred H-H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhC---CCcHHHHHHHHHHHHHHH
Confidence 1 1 1233578888888888999999999999999753211 1123356888888884 578899999999999998
Q ss_pred cCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
..-.. +........++.+..++.+.+ ..++..|+.+|..++..-.. .. .....++.+..++++++++|
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~-----~~-~~~~l~p~l~~~l~d~~~~V 379 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK-----DN-TIEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH-----HH-HHHHTHHHHHHHHTCSCHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH-----hH-HHHHHHHHHHHHhCCCchHH
Confidence 54322 221223356677777777664 78888888888877642111 00 11234566666666655444
No 163
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.27 E-value=3e-08 Score=111.59 Aligned_cols=179 Identities=11% Similarity=-0.040 Sum_probs=100.6
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+|+++....... ...+++|++|+++++..+.... ......+++|++|+|+ ++ .++..... ....+++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls--~N-~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLG--SS-KIYFLHPD-AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECT--TC-CCCEECTT-SSCSCSS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECC--CC-cCcccCHh-HccCCcc
Confidence 578888888876543211 2267888888888874322100 1223567888888885 23 44322111 1234778
Q ss_pred CCeeeccCccCCcHHHHHH-HHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCC--CCHHHHHHHHhcCCC
Q 007131 181 LKKLRLSGIRDICGDAINA-LAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSN--MKWGVVSQVWHKLPK 254 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~--i~~~~l~~l~~~~~~ 254 (617)
|++|+|++| .+++..... ....+++|++|++++|...+. ..+..+++|++|++++|.- +....+..+.. ++
T Consensus 99 L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~ 175 (844)
T 3j0a_A 99 LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KT 175 (844)
T ss_dssp CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CS
T ss_pred cCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cc
Confidence 888888887 454321111 134568888888888743221 3567788888888888632 11233333321 67
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCC------CCCEEEccCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSK------SLKVLCALNCPV 290 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~------~L~~L~l~~c~~ 290 (617)
|+.|++++|.++... +..+..++ .|+.|++++|..
T Consensus 176 L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 176 LSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp SCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcC
Confidence 777777776543311 11111222 377777777743
No 164
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.24 E-value=3e-08 Score=93.50 Aligned_cols=176 Identities=12% Similarity=0.005 Sum_probs=114.1
Q ss_pred HhCCCceEEEecCCC-CccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 100 SRCMNLQKLRFRGAE-SADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
..+++|++|+++++. ...-. ....+++|++|++++|..++... ......+++|+.|++++ + .++. +.. ..
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~--n-~l~~--lp~-~~ 124 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFN--T-GLKM--FPD-LT 124 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEE--E-CCCS--CCC-CT
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCC--C-CCcc--ccc-cc
Confidence 347899999999986 33211 12378999999999844454311 12234689999999973 3 3432 222 23
Q ss_pred cCCCCC---eeeccCccCCcHHHHHHHHhcCCCCc-eEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHH
Q 007131 177 CCPKLK---KLRLSGIRDICGDAINALAKLCPNLT-DIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVW 249 (617)
Q Consensus 177 ~~~~L~---~L~l~~~~~i~~~~l~~l~~~~~~L~-~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~ 249 (617)
.+++|+ +|+++++..++.-. ......+++|+ +|++++| .++. ..+.. ++|++|++++|..++.-. ....
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~-~~~~ 200 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVID-KDAF 200 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTCTTCCEEC-TTTT
T ss_pred cccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCCCCcccCC-HHHh
Confidence 467787 99999873333211 11224678999 9999998 4543 23344 799999999985454211 1223
Q ss_pred hcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 250 HKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 250 ~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
.++ ++|+.|++++|.++.- +. ..+++|+.|++.++..
T Consensus 201 ~~l~~~L~~L~l~~N~l~~l--~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTAL--PS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp TTCSBCCSEEECTTCCCCCC--CC--TTCTTCSEEECTTC--
T ss_pred hccccCCcEEECCCCccccC--Ch--hHhccCceeeccCccC
Confidence 567 9999999999876532 11 1588999999998753
No 165
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.23 E-value=2.4e-07 Score=98.11 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=97.1
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|++|+|+++.+.. ++ ..+++|++|+++++. ++. +.. . ..+|+.|+|+. + .++. +.. .+++|+
T Consensus 80 ~~L~~L~Ls~N~l~~-ip-~~l~~L~~L~Ls~N~-l~~--ip~-l--~~~L~~L~Ls~--N-~l~~--lp~---~l~~L~ 143 (571)
T 3cvr_A 80 PQITVLEITQNALIS-LP-ELPASLEYLDACDNR-LST--LPE-L--PASLKHLDVDN--N-QLTM--LPE---LPALLE 143 (571)
T ss_dssp TTCSEEECCSSCCSC-CC-CCCTTCCEEECCSSC-CSC--CCC-C--CTTCCEEECCS--S-CCSC--CCC---CCTTCC
T ss_pred CCCCEEECcCCCCcc-cc-cccCCCCEEEccCCC-CCC--cch-h--hcCCCEEECCC--C-cCCC--CCC---cCcccc
Confidence 567777777775542 22 456778888887775 332 211 1 22788888852 2 4433 111 467888
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHH-H-HHHHhcCCCCCeEE
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGV-V-SQVWHKLPKLVGLD 259 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~-l-~~l~~~~~~L~~L~ 259 (617)
.|+++++ .++. +. ..+++|++|++++|. ++. ..+. ++|++|++++| .++.-. + ..+....+.|+.|+
T Consensus 144 ~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N~-L~~lp~l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 144 YINADNN-QLTM--LP---ELPTSLEVLSVRNNQ-LTFLPELP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFR 213 (571)
T ss_dssp EEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCSS-CCSSCCCCC--------CCEEEE
T ss_pred EEeCCCC-ccCc--CC---CcCCCcCEEECCCCC-CCCcchhh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEe
Confidence 8888877 4542 21 145788888888873 433 1122 78888988887 343100 0 01112223349999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++|.++. ++..+..+++|+.|++++|++.+..
T Consensus 214 Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 214 CRENRITH--IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 99987763 4444445899999999999865543
No 166
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=3.9e-08 Score=90.51 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.3
Q ss_pred cCCCCCEEEccCCCC
Q 007131 276 SSKSLKVLCALNCPV 290 (617)
Q Consensus 276 ~~~~L~~L~l~~c~~ 290 (617)
.+++|+.|++++|+.
T Consensus 146 ~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW 160 (208)
T ss_dssp TCTTCCEEECCSCCB
T ss_pred cCCCccEEEecCCCe
Confidence 344555555555443
No 167
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.18 E-value=1.3e-05 Score=86.11 Aligned_cols=209 Identities=17% Similarity=0.024 Sum_probs=143.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+..++..+++.++..|+.+|.+++..... .......++.+.++..+++...|..|+.++..++..-..
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~----------~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~ 159 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSP----------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH----------HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence 6666666778899999999999998744321 122334566677777777888999999999988764221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. . ....++.+..++.++++.++..|+.+|..++...... ......+|.+..++. +++..++..|+.+|..++
T Consensus 160 ~--~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 160 A--V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS---DEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp H--H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHHHH
T ss_pred H--H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHH
Confidence 1 1 1223677888888899999999999999998543221 122356777888774 567889999999999887
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
..-+.. ......++.+..++.+++ ..++..|+.+|..++...+. .......++.+..++++++++||
T Consensus 232 ~~~~~~--~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 232 QLLPQE--DLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP------EITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp HHSCHH--HHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH------HHHHHTHHHHHHHHHTCSSHHHH
T ss_pred HhCCHH--HHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc------ccchhHHHHHHHHHhCCCcHHHH
Confidence 532221 122346677777777654 78999999999998863221 11124567888888877665543
No 168
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.18 E-value=3.1e-07 Score=95.28 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=15.0
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCR 136 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (617)
++|++|+++++.... +....++|++|+++++.
T Consensus 91 ~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPELPQSLKSLLVDNNN 122 (454)
T ss_dssp TTCSEEECCSSCCSS--CCCCCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCc--cccccCCCcEEECCCCc
Confidence 455666665554332 11123455555555543
No 169
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.17 E-value=1.8e-07 Score=87.43 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=69.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
.+++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++ .+..-...++
T Consensus 62 ~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~ 135 (229)
T 3e6j_A 62 SLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLT--ELPRGIERLT 135 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCT
T ss_pred CccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-ccc--ccCcccccCC
Confidence 3566666666665 332110 012235677777777777 3332 33567788888888876 343 1222236788
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|++|++++|.++.-. ...+..+++|+.|++++|+...+.
T Consensus 136 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccCCc
Confidence 8999999888765321 234567889999999999866554
No 170
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.16 E-value=1.6e-07 Score=86.30 Aligned_cols=150 Identities=12% Similarity=0.078 Sum_probs=100.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
..++|++|+++++. ++.. .......+++|++|++++ + .++... ......+++|++|+++++ .++.-. .....
T Consensus 26 ~~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~ 97 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGG--N-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-NGVFD 97 (208)
T ss_dssp CCTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS--S-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTT
T ss_pred CCCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCC--C-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-HhHhc
Confidence 35789999999986 4421 122345689999999963 3 454211 112245799999999988 554211 11234
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.+. ..+++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~--------~~~~~ 166 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNPWD--------CTCPG 166 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCCBC--------CCTTT
T ss_pred CccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCCee--------cCCCC
Confidence 6799999999998 3443 34678999999999997 343211 123456899999999998654 24667
Q ss_pred CCEEEccCCCCC
Q 007131 280 LKVLCALNCPVL 291 (617)
Q Consensus 280 L~~L~l~~c~~~ 291 (617)
|+.|+++.+...
T Consensus 167 l~~L~~~~n~~~ 178 (208)
T 2o6s_A 167 IRYLSEWINKHS 178 (208)
T ss_dssp THHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 777776665433
No 171
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.16 E-value=1.2e-07 Score=87.97 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
.+++|++|+++++ .++.-.- .....+++|++|++++|. ++ ...+..+++|++|++++| .++... ......++
T Consensus 55 ~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 129 (220)
T 2v70_A 55 KLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN-RITCVG-NDSFIGLS 129 (220)
T ss_dssp GCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTS-CCCCBC-TTSSTTCT
T ss_pred cCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCC-cCCeEC-HhHcCCCc
Confidence 4677777777766 3432110 122356788888888873 33 244677888888888887 333111 11234678
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+|++|++++|.++... +..+..+++|+.|++++|+...+....
T Consensus 130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 8999999998765432 344567899999999999877666533
No 172
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.16 E-value=5.9e-08 Score=97.66 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=91.7
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+.++.|+|+++. ++......+...+++|+.|+|+. + .++...... ...+++|++|+|+++ .++.-. ......+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~--N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH--N-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLD-EFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS--S-CCCEECTTT-TTTCTTCCEEECCSS-CCCEEC-TTTTTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCC--C-cCCccChhh-ccCCCCCCEEECCCC-cCCcCC-HHHhCCC
Confidence 445666666654 33211111111566777777742 2 343211111 234677888888877 443211 1123456
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
++|++|++++| .++. ..+..+++|++|++++| .++.-. ..+. ..+++|++|++++|.++.-. ...+..++
T Consensus 112 ~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~ 187 (361)
T 2xot_A 112 QALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLP 187 (361)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCC-GGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSC
T ss_pred cCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeC-HHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhcc
Confidence 88888888887 3443 45677888888888887 343211 0111 45789999999998765322 12334466
Q ss_pred C--CCEEEccCCCCCChhHHH
Q 007131 279 S--LKVLCALNCPVLEEENNI 297 (617)
Q Consensus 279 ~--L~~L~l~~c~~~~~~~~~ 297 (617)
. ++.|++.+|+..-+....
T Consensus 188 ~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 188 AWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp HHHHTTEECCSSCEECCHHHH
T ss_pred HhhcceEEecCCCccCCcCcH
Confidence 5 478999999877666543
No 173
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.15 E-value=2.6e-07 Score=82.40 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=82.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
.+++|++|+++++ .++. +..+....|+|++|++++| .+++ ..+..+++|++|++++| .++.-. ..+...+++|
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTC
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccC-cchhhcCCCC
Confidence 4689999999998 5653 3445556679999999999 4554 56778899999999998 454211 2334679999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++|++++|.++.-.-...+..+++|+.|++++|++..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 9999999988542211245679999999999998653
No 174
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.14 E-value=2.1e-05 Score=73.89 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=131.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccc--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVN-- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~-- 458 (617)
+.+.+.+.+.+...|..|+..|..+......... .. + ...++.|...+. +.+..++..|+.++..|+..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~----~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GE----Y--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CC----C--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CC----H--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 4577888899999999999999998765322110 00 1 234677888884 88999999999999999962
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.....+ ...++.+++.+.+.++.+++.|..+|.++....... ..++.+...+. +.++.++..++.+|.
T Consensus 90 ~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~---~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 90 KRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLS---NKNPSVKSETALFIA 158 (242)
T ss_dssp GGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc---CCChHHHHHHHHHHH
Confidence 2221211 224788999999999999999999999997654321 24566777774 468899999999999
Q ss_pred Hhc-cCCCc---hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 539 NLA-ADDKC---SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 539 ~l~-~~~~~---~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+. ..++. ...+ . ..++.++.++.+.. .+++..|..++..++.
T Consensus 159 ~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL-K-LLTTSLVKTLNEPD-PTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH-H-HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Confidence 964 43222 2222 2 46788999998775 8999999999999885
No 175
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.13 E-value=2.2e-07 Score=98.49 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=107.9
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++++.|+++++.... ++...+++|++|+++++. ++. +. ..+++|+.|++++ + .++. +.. ...+|
T Consensus 58 ~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~--N-~l~~--ip~---l~~~L 122 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-LPDNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACD--N-RLST--LPE---LPASL 122 (571)
T ss_dssp HTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCS--S-CCSC--CCC---CCTTC
T ss_pred cCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccC--C-CCCC--cch---hhcCC
Confidence 4589999999986654 333246899999999986 542 22 4578999999963 3 5543 222 12399
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. .+++|+.|++++| .++.-. ..+++|++|++++|. ++. +..+ .++|++|+++
T Consensus 123 ~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~lp-~~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~L~Ls 188 (571)
T 3cvr_A 123 KHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTMLP-ELPTSLEVLSVRNNQ-LTF--LPEL---PESLEALDVS 188 (571)
T ss_dssp CEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSSC-CSC--CCCC---CTTCCEEECC
T ss_pred CEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCcCC-CcCCCcCEEECCCCC-CCC--cchh---hCCCCEEECc
Confidence 99999998 5543 222 5789999999998 444311 157899999999983 432 1221 2899999999
Q ss_pred cCCCCHHHHHH----HHhcCCCCCEEEccCCCCCC
Q 007131 262 RTDVGPITISR----LLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 262 ~~~~~~~~l~~----~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|.++ .++. +....+.|+.|++++|.+..
T Consensus 189 ~N~L~--~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 189 TNLLE--SLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp SSCCS--SCCCCC--------CCEEEECCSSCCCC
T ss_pred CCCCC--chhhHHHhhhcccccceEEecCCCccee
Confidence 98776 2222 11222334999999998654
No 176
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.13 E-value=8.9e-06 Score=91.76 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=137.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...+..++++++..|+.+|..++....... .. .-.+.++.++..+.+.++.++..|+..+..++.....
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~-------~~-~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL-------LP-HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH-------GG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH-------HH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 677777778889999999999999875432211 00 0124567777777777888888888777777642111
Q ss_pred HH-------------------------------------------------------HHHH-------hCCHHHHHHHHh
Q 007131 462 AK-------------------------------------------------------AVAE-------EGGINILAVLAR 479 (617)
Q Consensus 462 ~~-------------------------------------------------------~i~~-------~~~i~~L~~lL~ 479 (617)
+. .+.. ...++.+.+.+.
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 369 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 00 0000 012345555666
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC--chHHHHHhCCHH
Q 007131 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK--CSMEVALAGGVH 557 (617)
Q Consensus 480 ~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~~~~~ 557 (617)
+.+..+++.|+.+|.+++........-.-.+.++.++..+. +.++.++..|++++.+++..-. ..... -.+.++
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~ 445 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS---DKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMT 445 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHTHHHHHHSCTTTT-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHH
Confidence 78889999999999999976532211112456777888884 5788999999999999985311 11111 124567
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 558 ALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 558 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.|++.+.+++ +.++..|+++|.+++..... .... .-.+.++.|+.+++.
T Consensus 446 ~L~~~L~d~~-~~vr~~a~~aL~~l~~~~~~---~l~~-~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 446 ELLKRILDSN-KRVQEAACSAFATLEEEACT---ELVP-YLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHTCSS-HHHHHHHHHHHHHHHHHHGG---GGGG-GHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHHHHHhhH---hhHh-HHHHHHHHHHHHHHH
Confidence 7888887664 89999999999999864332 1111 124566666666653
No 177
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=1.8e-07 Score=86.71 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+|+++ .++.-. ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++
T Consensus 55 l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~ 129 (220)
T 2v9t_B 55 YKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-KINCLR-VDAFQDLHN 129 (220)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-CCCEeC-HHHcCCCCC
Confidence 567777777766 443210 1112345778888887773 332 33567788888888876 333211 112346788
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHH
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
|++|++++|.++... +..+..+++|+.|++++|+..-+..+
T Consensus 130 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888887664322 23345688999999999987665543
No 178
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.11 E-value=1.5e-05 Score=70.87 Aligned_cols=183 Identities=16% Similarity=0.100 Sum_probs=138.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK- 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~- 460 (617)
..+.++++..++.++.+|+.+|..+-...+... +...-...++.+++++++.|+.+...|+++|..|-.+.+
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l-------~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRADSDL-------RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccc-------cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 788899999999999999999999875543322 344556778999999999999999999999999988433
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
....+.+. +..|..+++++++-..++|+..|..+..-...+ +.+..+..++ .+.+.+++..++.++-++
T Consensus 109 ~~~~y~Kl--~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl---~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 109 GSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELV---VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp CHHHHHHH--HHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHH---hCCChhHHHHHHHHHHHh
Confidence 33344332 567889999999999999999999994322222 2345567777 478999999999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+...+....+ .+.+.-+-.++.+.+ +.+++.|..+|..+...
T Consensus 178 a~~S~D~~i~--~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 178 LNSSADSGHL--TLILDEIPSLLQNDN-EFIVELALDVLEKALSF 219 (265)
T ss_dssp GGGCSSCCCG--GGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTS
T ss_pred hcccCCHHHH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 9644332211 134455677888875 89999999999999874
No 179
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.10 E-value=2.2e-06 Score=92.02 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=43.3
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|+.|++++| .++.-. ..+++|++|++++| .++. +...+++|+.|++++|.++. ++. .+++|+.|+
T Consensus 201 ~~L~~L~L~~N-~l~~l~-~~~~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~ 267 (622)
T 3g06_A 201 SELYKLWAYNN-RLTSLP-ALPSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTS--LPM---LPSGLLSLS 267 (622)
T ss_dssp TTCCEEECCSS-CCSSCC-CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred chhhEEECcCC-cccccC-CCCCCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCc--CCc---ccccCcEEe
Confidence 45555555554 222100 12367777777776 3432 12556778888888876652 222 567888888
Q ss_pred ccCCCCC
Q 007131 285 ALNCPVL 291 (617)
Q Consensus 285 l~~c~~~ 291 (617)
+++|.+.
T Consensus 268 Ls~N~L~ 274 (622)
T 3g06_A 268 VYRNQLT 274 (622)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 8887655
No 180
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.08 E-value=5.4e-07 Score=84.00 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccC
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~ 84 (617)
.|+.||+|++.+||+||+.+|+++++.|||+|+.++.++.+|+.+-
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l 49 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFL 49 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3788999999999999999999999999999999999999997553
No 181
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.03 E-value=5.7e-07 Score=75.65 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=89.3
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH
Q 007131 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 425 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 504 (617)
.....++.++.+|+++++.+|..|+.+|..+.. ..++.|+++|+++++.++..|+.+|.++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 455677889999999899999999888876632 136889999999999999999999999863
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.++++.|+.++.+ .++.++..|+++|..+.. ...++.|..++.+++ ..++..|+.+|..|
T Consensus 72 ----~~a~~~L~~~L~d---~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~-~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLED---DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHH---CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHhC
Confidence 1358889999964 778999999999998852 235788888887664 79999999888653
No 182
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.02 E-value=2.2e-06 Score=92.14 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=122.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++++.+++..+++-+..++..++....+ + -.-.+..+.+-|.++++.+|..|+.+|+++. .++.
T Consensus 52 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-----------~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~ 118 (591)
T 2vgl_B 52 PDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-----------M-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKI 118 (591)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-----------H-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccCch-----------H-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHH
Confidence 6778888999999999998888887543211 1 1234567777788889999999999999986 3433
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.+ ++.+.++|.+.++.++..|+.++.++.. +++.. .+.+.++.+..+| .+.++.++.+|+.+|..+
T Consensus 119 ~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL---~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 119 TEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLI---ADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTT---SCSCHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHh---CCCChhHHHHHHHHHHHH
Confidence 3333 4678899999999999999999999975 33322 2246778888888 457889999999999999
Q ss_pred ccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
+..++.. ..-...+.+..|+..+.+.+ +..+.....+|..++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECT-EWGQIFILDCLSNYN 230 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHTSC
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCC-chHHHHHHHHHHHhC
Confidence 9765422 00011123444555554443 555555555555554
No 183
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.02 E-value=1.1e-07 Score=103.64 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=70.7
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcC
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 252 (617)
..+++|+.|+++++.... .........+++|++|++++| .++. ..+..+++|++|++++| .++.-. .....++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l 541 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD-TFPYKCL 541 (635)
T ss_dssp TTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCC-CGGGTTC
T ss_pred ccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCC-hhHHhCC
Confidence 346778888888763221 111122345678888888887 4443 45677888888888887 333211 1123567
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcC-CCCCEEEccCCCCCChhH
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~~~ 295 (617)
++|++|++++|.++... +..+..+ ++|++|++++|+..=+..
T Consensus 542 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCCEEECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCEEECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88888888887764332 2223344 578888888887665554
No 184
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.00 E-value=3.9e-07 Score=99.27 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=96.5
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+++++|+|+++. ++.-. ...+..+++|++|+|+ +| .++.-.- .....+++|++|+|+++ .++.-. ......+
T Consensus 52 ~~~~~LdLs~N~-i~~l~-~~~f~~l~~L~~L~Ls--~N-~i~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLS--RC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLA-LGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECT--TC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEEC-GGGGTTC
T ss_pred cCCCEEEeeCCC-CCCCC-HHHHhCCCCCCEEECC--CC-cCCCcCh-hHhcCCCCCCEEEccCC-cCCCCC-HHHhcCC
Confidence 478999998875 44311 1123468899999995 34 4442111 11234788999999987 444211 1123467
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC---HHHHHHHHhcCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG---PITISRLLTSSK 278 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~ 278 (617)
++|++|++++|. ++. ..+..+++|++|++++| .++...+......+++|++|++++|.++ ...+..+-....
T Consensus 124 ~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 889999998883 433 34678889999999887 3332222334567888999999987653 333333333233
Q ss_pred CCCEEEccCCCCC
Q 007131 279 SLKVLCALNCPVL 291 (617)
Q Consensus 279 ~L~~L~l~~c~~~ 291 (617)
....++++.+.+.
T Consensus 202 ~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 202 LNLSLDLSLNPMN 214 (635)
T ss_dssp CCCEEECTTCCCC
T ss_pred hhhhhhcccCccc
Confidence 4556777777643
No 185
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.00 E-value=2.7e-06 Score=88.14 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=26.2
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
++|++|+++++.... +....++|++|+++++. ++. +.. ...+++|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~--l~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVD 161 (454)
T ss_dssp TTCCEEECCSSCCSC--CCSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECC
T ss_pred CCCcEEECCCCccCc--ccCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECC
Confidence 567777776664432 00112566666666654 322 111 3345666666664
No 186
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.95 E-value=1.3e-06 Score=73.38 Aligned_cols=117 Identities=21% Similarity=0.089 Sum_probs=90.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++.+|+++++.++..|+.+|..+. + ..++.|+++|+++++.+|..|+++|.++..
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---~----------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMG---D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCS---S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---c----------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 78888998888888888887777542 0 125899999999999999999999998763
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.++++.|+.+|.++++.++..|+++|.++.. .++++.|+.++. +.++.++..|+.+|..+
T Consensus 72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~---d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAE---TGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT---SCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHHhC
Confidence 1247899999999999999999999999862 246788999984 46788999999888653
No 187
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.93 E-value=2.5e-05 Score=83.93 Aligned_cols=184 Identities=17% Similarity=0.078 Sum_probs=131.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+++.+.++.+|..|+.++.++.....+. +.+.+.++.+.++|.+.++.++..|+.+|..++.+...
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----------VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----------cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 67888888999999999999999997644332 44467889999999999999999999999999885431
Q ss_pred H-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 A-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
. ..-...+.+..|++.+...++-.+...+.+|..++..++.. ....++.+..++. +.++.++.+|++++..+
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~---~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLS---HANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSC---SSTTHHHHHHHHHHHHS
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHc---CCChHHHHHHHHHHHHH
Confidence 1 00001223667778887888888888888888887443211 1124555656663 46779999999999999
Q ss_pred cc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 541 AA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 541 ~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.. +++....+. ....+.|+.++. + +..++..|+.+|..+...
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQK 312 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHh
Confidence 74 233333333 345667776554 4 479999999999998863
No 188
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.91 E-value=1.4e-05 Score=83.03 Aligned_cols=222 Identities=13% Similarity=0.024 Sum_probs=141.5
Q ss_pred HHHHHhhccC--CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQST--QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
+.++..+... ++.++..|+.++.++...-..+.. . .....-.++.+.+.+.+.+++++..++.++..++...
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~----~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD--K----ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT--S----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhh--h----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 7788888776 789999999999987532111100 0 0111113566666677778999999999999998732
Q ss_pred hh--HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH------------------HHHh---cCChHHHH
Q 007131 460 KV--AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG------------------AIAD---AGGVKALV 516 (617)
Q Consensus 460 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~------------------~i~~---~g~i~~L~ 516 (617)
.. ...+ ..+.++.++..+++.+++++..|+..+..++....... .+.+ ...+|.++
T Consensus 249 ~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 249 YQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp GGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 21 1111 11446777888888999999999999888875321000 0111 22455555
Q ss_pred HHHhhc----CCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCc
Q 007131 517 DLIFKW----SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (617)
Q Consensus 517 ~ll~~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (617)
..+.+. .+.+..++..|+.+|..++..-+. .+. ...++.+...+.+.+ ..++..|+.+|..++...... ..
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~-~~ 402 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPS-QL 402 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTT-TT
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHH-HH
Confidence 666431 122346889999999999854331 222 235566777777664 899999999999999743321 11
Q ss_pred cccccccCcHHHHHHHhcCCCCCCC
Q 007131 593 SAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 593 ~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
... -..+++.|+.++.++++.||
T Consensus 403 ~~~--l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 403 KPL--VIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp CTT--TTTHHHHHHHGGGCSCHHHH
T ss_pred HHH--HHHHHHHHHHHhcCCCHHHH
Confidence 111 25789999999998877664
No 189
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.90 E-value=3.1e-06 Score=80.10 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHccCChHhHH-HHhhhchhHHHhhcCCCccccc
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRA-SLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~-~~~~vck~w~~~~~~~~~w~~l 83 (617)
..+..||+|++..||++||.++++ +|+.|||+|+.+..++.+|+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 468999999999999999999999 9999999999999998888644
No 190
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.89 E-value=2.6e-06 Score=77.03 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++. +......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~-~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIP-PRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeC-HHHhCCCCCC
Confidence 46777777766 4431 11223456788888888773 333 34677888888888886 333211 1123467888
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++|++++|.++.-. ...+..+++|+.|++++|+..-+..
T Consensus 105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 105 RLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecCCc
Confidence 89999888765321 2345568999999999998766554
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=3.1e-06 Score=90.05 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
..|+.|+++++ .++. +.. ...+++|+.|++++| .++. ..+..+++|++|++++| .++. +. -...+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCCCCc
Confidence 36888888877 5543 233 345678888888887 3443 45677888888888887 3432 22 345678888
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
.|++++|.++....+..+..+++|+.|++++|++.+.
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 8888887765432234456788888888888875443
No 192
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.85 E-value=1.5e-06 Score=78.66 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-........+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEIS-NKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEEC-SSSSTTCTTC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccC-HHHhcCCCCC
Confidence 36777777766 4432111112345678888888877 3432 45677788888888886 343211 1113457889
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++|++++|.++... +..+..+++|++|++++|+...+..
T Consensus 105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 105 KTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999988765432 3345568999999999998776654
No 193
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.83 E-value=1.2e-06 Score=88.08 Aligned_cols=134 Identities=12% Similarity=0.083 Sum_probs=90.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCc
Q 007131 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVL 227 (617)
Q Consensus 151 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~ 227 (617)
+.++.|+|++ + .++......+...+++|++|+|+++ .++.-.- .....+++|++|++++| .++. ..+..++
T Consensus 39 ~~l~~L~Ls~--N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSH--N-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCS--S-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred CCCCEEECCC--C-CCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCC-cCCcCCHHHhCCCc
Confidence 4689999963 3 5554222222226899999999998 5543111 12346799999999998 4554 4578899
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCh
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++|++++| .++... ......+++|++|++++|.++.-. ..++ ..+++|+.|++++|.+...
T Consensus 113 ~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVD-RNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp TCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCEEECCCC-cccEEC-HHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9999999998 443211 122457899999999998765421 1122 4589999999999986543
No 194
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.83 E-value=2.8e-06 Score=93.37 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=40.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
.+++|++|+|+++ .++ .+..-+..+++|++|+|++|. ++. ..+..+++|++|++++| .++ .+..-...+++
T Consensus 245 ~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVT--TLPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCC--CCCSSTTSCTT
T ss_pred CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCC--ccChhhhcCCC
Confidence 3566666666665 333 111112345666666666652 332 23455556666666555 232 11111334555
Q ss_pred CCeEEeccCCCC
Q 007131 255 LVGLDVSRTDVG 266 (617)
Q Consensus 255 L~~L~l~~~~~~ 266 (617)
|++|++++|.++
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 666666655554
No 195
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.82 E-value=3.4e-06 Score=78.66 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
.++|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccC-hhHhCcchh
Confidence 378999999987 554311 1123467999999999984 443 44688999999999998 444211 222457899
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++|++++|.++ .++..+..+++|++|++++|.+..
T Consensus 114 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 114 LKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence 999999999876 344455789999999999997553
No 196
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.80 E-value=0.00035 Score=66.54 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=132.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-hccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD- 508 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~- 508 (617)
..+++-|.+.+.+.+..++.-|.. ++.+.+....++..+|+..|+++....+...+.+++.||.+|-.....-..++.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 355667777778888899999988 666888999999999999999999999999999999999999988777766664
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH--------hC--CHHHHHHHHh---cCCchhHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL--------AG--GVHALVMLAR---SCKFEGVQEQ 574 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~--------~~--~~~~L~~ll~---~~~~~~~~~~ 574 (617)
...|..+..++. +....+.+.|+..|..++...+ +...+.+ .| -+..|+.+|. ++ +.+++.+
T Consensus 201 ~~fI~~lyslv~---s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~ 276 (339)
T 3dad_A 201 SDTIQWLYTLCA---SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVY 276 (339)
T ss_dssp HHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHH
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHH
Confidence 567777888884 4778899999999999997665 3322222 11 2678999997 44 4899999
Q ss_pred HHHHHHHHhccCCCCC---CccccccccCcHHHHHHHhcCC
Q 007131 575 AARALANLAAHGDSNS---NNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 575 a~~~L~~l~~~~~~~~---~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|...+-.+-...+... .....+.+.|.-..+.+.++..
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 8888777665444321 1222334456556666667665
No 197
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=1.9e-06 Score=94.71 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 204 CPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
+++|++|+|++| .++. ..+..+++|++|++++| .++ .+..-...+++|++|++++|.++ .++..+..+++|+
T Consensus 246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLT--SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQ 319 (727)
T ss_dssp CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCS--SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCC
T ss_pred CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCC--ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCcc
Confidence 344444444444 2221 22344444444444444 222 11111233444444444444433 1222233444444
Q ss_pred EEEccCCCC
Q 007131 282 VLCALNCPV 290 (617)
Q Consensus 282 ~L~l~~c~~ 290 (617)
+|+|++|++
T Consensus 320 ~L~L~~N~l 328 (727)
T 4b8c_D 320 FLGVEGNPL 328 (727)
T ss_dssp CEECTTSCC
T ss_pred EEeCCCCcc
Confidence 444444443
No 198
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.75 E-value=1.8e-06 Score=78.54 Aligned_cols=108 Identities=18% Similarity=0.051 Sum_probs=79.8
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
..+++|++|+++++ .++. +.. ...+++|++|++++| .++. ..+..+++|++|++++| .++. +.. ...++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~l~ 115 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIAS--LSG-IEKLV 115 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCC-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHHHH
T ss_pred hcCCCCCEEECCCC-CCcc--ccc-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCc--CCc-cccCC
Confidence 34899999999988 4544 222 335699999999998 3443 34566799999999998 4544 222 45688
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|++|++++|.++.-.....+..+++|++|++++|+...
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 999999999988753323456789999999999997433
No 199
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=4.1e-06 Score=74.54 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.- .......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 28 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccC-HHHhhCCccc
Confidence 56677777665 33311 0112234577777777776 3332 33567778888888776 333110 1123467888
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++|++++|.++... ..++..+++|++|++++|+...+.
T Consensus 103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccC
Confidence 88888887765221 234466889999999999876655
No 200
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00012 Score=68.86 Aligned_cols=189 Identities=8% Similarity=-0.006 Sum_probs=128.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHhh-hcccCCCcccCCchhHHHHHh-hCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccch
Q 007131 383 LLLSLMQSTQEDVQERAATGLAT-FVVINDENASIDCGRAEAVMK-DGGIRLLLDLA-KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
.+.+.+.+.+...|..|+..|.. +.....+-.. ...+ ...+..|.+.+ ++.+..++..|+.+|..|+..-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~-------~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKS-------TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCC-------TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCcccc-------CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 45577788999999999999998 7643222100 0001 23467888888 6789999999999999998521
Q ss_pred ---hhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 460 ---KVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 460 ---~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
... ... ...++.+++.+++..+.+++.+..+|..++..- .....-.-...++.|+..|. +.++.++..++
T Consensus 93 ~~~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~---~k~~~vk~~al 167 (249)
T 2qk1_A 93 KTPGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK---HKTPQIRMECT 167 (249)
T ss_dssp CTTTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT---CSSHHHHHHHH
T ss_pred ccccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc---CCChHHHHHHH
Confidence 211 111 113788899998888999999988888887522 10000000024556666674 45889999999
Q ss_pred HHHHHhccCCCc-hHHHH-H--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 535 GALANLAADDKC-SMEVA-L--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 535 ~~L~~l~~~~~~-~~~i~-~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+|..++..... ...+. . ...++.+.+++.+++ ..++..|..++..++.
T Consensus 168 ~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 168 QLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 999999854332 12221 1 367889999998775 8999999999999985
No 201
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.73 E-value=3.7e-06 Score=77.79 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=77.9
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+.+++|+++++ .++..........+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQ-HKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCC-GGGGTTCSSC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccC-HhHhcCCcCC
Confidence 46788888887 4543211122356899999999998 4554 45788999999999998 343211 2234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
++|++++|.++... +..+..+++|++|++++|.+.+.
T Consensus 108 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 108 KTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEE
Confidence 99999998875432 23455789999999999976544
No 202
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.72 E-value=3.9e-06 Score=77.68 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-.- .....+++|++|++++| .++. ..+..+++|++|++++| .++.- ......++++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCCCCC
Confidence 57888988887 4442111 12345789999999998 4543 56789999999999997 44311 12234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++|++++|.++... +..+..+++|++|++++|.+.+..
T Consensus 107 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 107 QLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEEC
Confidence 99999998775432 234567899999999999865443
No 203
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.67 E-value=0.0002 Score=77.09 Aligned_cols=202 Identities=13% Similarity=0.021 Sum_probs=141.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
..+.+-+.+.++.++-.|+.+|.++.. ..+. ...++.+.++|.+.++.+|..|+.++.++.. +++
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~-------------~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS-------------SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC-------------HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC-------------HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 677777888899999999999998851 1222 3567889999999999999999999999987 333
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhc------------CCCCH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKW------------SSGGD 527 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~------------~~~~~ 527 (617)
.. .+.++.+..+|.+.++.++..|+.+|..++... +....+ ...++.++.+|... ...++
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred HH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 22 245777888898999999999999999998654 222222 25788888887631 02467
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcC-----CchhHHHHHHHHHHHHhccCCCCCCccccccccCcH
Q 007131 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-----KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~ 602 (617)
-++..++.+|..++..++. ......+.|..++... ....+...|+.++.++... ..+. ..++
T Consensus 249 ~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--------~~l~-~~a~ 315 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--------SGLR-VLAI 315 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--------HHHH-HHHH
T ss_pred hHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--------HHHH-HHHH
Confidence 7888899999999875432 1123455566665421 1246777888888776421 1111 2457
Q ss_pred HHHHHHhcCCCCCCC
Q 007131 603 EALVQLTRSPHEGVR 617 (617)
Q Consensus 603 ~~L~~ll~~~~~~vr 617 (617)
+.|..++.++++.+|
T Consensus 316 ~~L~~~L~~~d~~vr 330 (618)
T 1w63_A 316 NILGRFLLNNDKNIR 330 (618)
T ss_dssp HHHHHHHTCSSTTTH
T ss_pred HHHHHHHhCCCCchH
Confidence 788888877776664
No 204
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.62 E-value=0.00014 Score=75.31 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=126.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+.+++++..++.+|..++........ .....+.++.++..+++.+++++..|+..+..++.....
T Consensus 220 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 292 (462)
T 1ibr_B 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 5555666778899999999999998765433210 111115677788888888999999999999888764311
Q ss_pred HHH------------------HHH---hCCHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 AKA------------------VAE---EGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 ~~~------------------i~~---~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
... +.+ ...++.+++.+... +..++..|+.+|..++..-. . .+. ...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~-~~~~~ 369 (462)
T 1ibr_B 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV-PHVLP 369 (462)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH-HHHHH
T ss_pred HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHH
Confidence 110 111 12245566666432 23678899999998875322 1 111 13455
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDK-C--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.+...+ .+.+..++..|+.++..++.... . +..+ ...++.++.++.+++ ..++..|+++|.+++..
T Consensus 370 ~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 370 FIKEHI---KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 566666 35788999999999999997433 1 1111 356788899888775 89999999999999974
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=1.6e-05 Score=84.57 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 206 NLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
.|+.|++++| .++. ..+..+++|++|++++| .++ .+......+++|+.|++++|.++. ++ .+.++++|+.|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSSCCCGGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCCCcCccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEE
Confidence 5666776666 2332 22556666777777665 333 122233456667777777666553 33 345566677777
Q ss_pred ccCCCCCCh
Q 007131 285 ALNCPVLEE 293 (617)
Q Consensus 285 l~~c~~~~~ 293 (617)
+++|.+.+.
T Consensus 515 Ls~N~l~~~ 523 (567)
T 1dce_A 515 LCNNRLQQS 523 (567)
T ss_dssp CCSSCCCSS
T ss_pred CCCCCCCCC
Confidence 766655443
No 206
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.57 E-value=0.00068 Score=60.48 Aligned_cols=148 Identities=17% Similarity=0.081 Sum_probs=112.5
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE-HK 503 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~ 503 (617)
.+.+..|+++|.+.|+.++..|..+|..+... ...+..+++. .++.+++++++.++.+.-.|..+|..|-.+.+ ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34678899999999999999999999999885 3344444443 68999999999999999999999999875542 22
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+.. .+..|.+++. ++++-+...|+..+.-+......+. .+..+.+++.+. +.+++..|..++.+++
T Consensus 111 ~~y~K--l~~aL~dlik---~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Sk-d~~vK~agl~~L~eia 178 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLE---SPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSP-DLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHH--HHHHHHHHTT---SCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHG
T ss_pred HHHHH--HHHHHHHHhc---CCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCC-ChhHHHHHHHHHHHhh
Confidence 33322 4556677774 5888899999999999943333322 345688888555 5999999999999999
Q ss_pred ccCC
Q 007131 584 AHGD 587 (617)
Q Consensus 584 ~~~~ 587 (617)
..++
T Consensus 179 ~~S~ 182 (265)
T 3b2a_A 179 NSSA 182 (265)
T ss_dssp GGCS
T ss_pred cccC
Confidence 8554
No 207
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.52 E-value=0.00034 Score=78.91 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=136.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+.+...+..|+.++..++...... .-.... ...++.++..+.++++.+|..+++++..++..-..
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~------~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKV------QRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH------HHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH------HHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 66667777888999999999999987443211 001111 24678888888888999999999999998863110
Q ss_pred ----HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc------chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 462 ----AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE------EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 462 ----~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~------~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
...+ ...++.+++.+.+. +.++..|+++|.+++..- .....+ ...++.|+.++.. .+.++.++.
T Consensus 445 ~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~-~d~~~~vr~ 518 (861)
T 2bpt_A 445 SIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANR-IDNEFNARA 518 (861)
T ss_dssp GSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTC-SCCGGGHHH
T ss_pred hcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhC-cCcchHHHH
Confidence 1111 12367788888765 889999999999987431 111111 2346677777753 233468999
Q ss_pred HHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcC--------------CchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 532 RAAGALANLAADDKC-SMEVALAGGVHALVMLARSC--------------KFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~--------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
.++.++..++...+. ...... ..++.+++.+... ....++..++.+|.+++..-+. .....
T Consensus 519 ~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~ 594 (861)
T 2bpt_A 519 SAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS---SVEPV 594 (861)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG---GTGGG
T ss_pred HHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh---hhHHH
Confidence 999999999854332 222222 3566677766531 1246788899999999864332 11111
Q ss_pred cccCcHHHHHHHhcCCCC
Q 007131 597 QEAGALEALVQLTRSPHE 614 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~ 614 (617)
-...++.+..++++.+.
T Consensus 595 -~~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 595 -ADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp -HHHHHHHHHHHHHSTTG
T ss_pred -HHHHHHHHHHHHccCCC
Confidence 13466777777766543
No 208
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.52 E-value=0.00015 Score=85.18 Aligned_cols=213 Identities=14% Similarity=0.036 Sum_probs=142.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.++.+|..|+.+|..++..... . .-...++.++..+.++++.+|..|+.+|..++..-..
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~------~-----~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKE------Y-----QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH------H-----HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH------H-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 7788888888999999999999998743221 1 1123557788888888889999999999988862111
Q ss_pred H------HHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 462 A------KAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 462 ~------~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
. ..-.....++.|++.+. +.++.++..|+.+|..++.. +.....+ ...++.++..+. +.+..++..
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~---~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLT---SPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGG---CSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHc---CCcHHHHHH
Confidence 1 01112334788999998 47889999999999998742 1111000 123444555553 466789999
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|+.++..++...+.. +. ...++.++..+...++..++..|+.++..++..... .... .-...++.+.+.++++
T Consensus 195 a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 195 TIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGE-YLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTT-SCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHH-HHHHHHHHHHHHhcCC
Confidence 999999998654322 22 245788888776654356777888899888864321 1111 1246899999999888
Q ss_pred CCCCC
Q 007131 613 HEGVR 617 (617)
Q Consensus 613 ~~~vr 617 (617)
+++||
T Consensus 268 ~~~vR 272 (1230)
T 1u6g_C 268 DDELR 272 (1230)
T ss_dssp CTTTH
T ss_pred CHHHH
Confidence 87775
No 209
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=5.7e-06 Score=81.89 Aligned_cols=91 Identities=10% Similarity=0.142 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhcCCCCceEeecCC--CCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC-eEEeccC--CCC
Q 007131 192 ICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV-GLDVSRT--DVG 266 (617)
Q Consensus 192 i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~-~L~l~~~--~~~ 266 (617)
+....+..+...|++|++|++.+| ..+.+..+..|++|++|++..+ ++.-+ ...+.+|++|+ .+++..+ .++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~~l~~I~ 289 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPASVTAIE 289 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECTTCCEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcccceEEc
Confidence 344455556666899999999885 3344567888999999999775 32211 22346789999 9999882 233
Q ss_pred HHHHHHHHhcCCCCCEEEccCCC
Q 007131 267 PITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 267 ~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+. .+.+|++|+.|++.++.
T Consensus 290 ~~----aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 290 FG----AFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TT----TTTTCTTEEEEEECSSC
T ss_pred hh----hhhCCccCCEEEeCCCc
Confidence 33 35679999999987664
No 210
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=2.5e-05 Score=77.18 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHhcCCCCCeeeccCc--cCCcHHHHHHHHhcCCCCceEeecCC-CCCCHHHHhcCcCCC-eecccCCCCC
Q 007131 165 RITSDAVKAIALCCPKLKKLRLSGI--RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVR-FLSVAGTSNM 240 (617)
Q Consensus 165 ~i~~~~l~~l~~~~~~L~~L~l~~~--~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~-~L~l~~~~~i 240 (617)
.+....+..+...|++|++|+++++ ..+.+. ....|++|++|++.++ ..+.+..+.+|++|+ .+.+.. .+
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l 285 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SV 285 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TC
T ss_pred eecHHHHHHHHHhcCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cc
Confidence 3555666666677999999999985 223332 3357899999999875 234557789999999 999976 23
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEc
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCA 285 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 285 (617)
+.-+ ...+.+|++|+.+++.++.++.-. ...+.+|++|+.|..
T Consensus 286 ~~I~-~~aF~~c~~L~~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIE-FGAFMGCDNLRYVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEC-TTTTTTCTTEEEEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred eEEc-hhhhhCCccCCEEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 2111 223468999999999886553322 234567999998863
No 211
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.46 E-value=0.0056 Score=58.31 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=131.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++-|.+.+.+.++.++..|..+-..+.. ....++..+|+..|+++....+.+.+..+..++.+|-.+..+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~-------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKD-------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTT-------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchH-------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc
Confidence 5667777777777788898888873222222 236899999999999999999999999999999999999888
Q ss_pred HHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh-------c---CChHHHHHHHhhcCCCCHHH
Q 007131 462 AKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD-------A---GGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 462 ~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~-------~---g~i~~L~~ll~~~~~~~~~~ 529 (617)
-..++. ...|..+..++.+....+...|+..|..++... .+...+.+ . -..+.|+.+|.+..+.+.++
T Consensus 194 m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 877775 445899999998888999999999999998544 33333322 1 13678999996433578899
Q ss_pred HHHHHHHHHHhccCCCc---hHHHH---HhCCHH-HHHHHHhcC-CchhHHHH
Q 007131 530 LERAAGALANLAADDKC---SMEVA---LAGGVH-ALVMLARSC-KFEGVQEQ 574 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~---~~~i~---~~~~~~-~L~~ll~~~-~~~~~~~~ 574 (617)
+.+|+..+..+-..-+. +..+. +.-++. .+.+.+... .+.+++++
T Consensus 274 q~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 274 LVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 99999887776543222 33333 334454 455566553 23444443
No 212
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.44 E-value=2.1e-05 Score=81.76 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcC-CCcccccCC
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGAS-PCLWSSLDL 85 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~-~~~w~~l~l 85 (617)
.+.+..||+|++.+||+||+.++++++++|||+|+.+..+ +.+|+.+-+
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4568899999999999999999999999999999999887 789986654
No 213
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.36 E-value=0.00078 Score=76.05 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=135.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+...+++++..++.+|..++....... ........++.++..+.+.++.++..|+..+..++.....
T Consensus 220 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM-------ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC-------HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 566666677788999999999999875543321 2233346778888888888899999999999888764210
Q ss_pred -----HHH-------------HHH---hCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 -----AKA-------------VAE---EGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 -----~~~-------------i~~---~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
... ..+ ...++.+++.|.. .+..++..|+.+|..++.... ..+. ...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~ 369 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLP 369 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHH
T ss_pred HhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHH
Confidence 000 000 1125566666653 234688888889988875322 1111 12344
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (617)
.+...+ .+.+..++..|+.++..++.... . -.... ...++.++..+.++. ..++..|+++|.+++........
T Consensus 370 ~l~~~l---~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 370 FIKEHI---KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHc---cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 455555 35678999999999999996543 2 11222 346788888887764 89999999999999975332100
Q ss_pred ccccccccCcHHHHHHHhcC
Q 007131 592 NSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 592 ~~~~~~~~g~~~~L~~ll~~ 611 (617)
.... -...++.|+..+.+
T Consensus 445 ~~~~--l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 445 NDVY--LAPLLQCLIEGLSA 462 (876)
T ss_dssp STTT--HHHHHHHHHHHTTS
T ss_pred cHHH--HHHHHHHHHHHHcC
Confidence 0011 12456666666654
No 214
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.36 E-value=0.0012 Score=61.82 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=107.1
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.+...+. ..+..++..|+.++..|+..-.... .-.-...++.+++.+.+.++.+|..|+.+|..+.....
T Consensus 59 ~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~--------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 59 SALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF--------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG--------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 77788884 7889999999999999984322211 11234477899999999999999999999999987543
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cc--hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EE--HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.. ..++.+...|+..++.++..++..|..+... ++ ....+ ...+|.|+.++. +.+.+++..|..+
T Consensus 131 ~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~---D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 131 LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLN---EPDPTVRDSSAEA 199 (242)
T ss_dssp HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHT---SSCHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 21 1357788888889999999999999996433 22 12222 247888888894 5888999999999
Q ss_pred HHHhcc
Q 007131 537 LANLAA 542 (617)
Q Consensus 537 L~~l~~ 542 (617)
+..++.
T Consensus 200 l~~l~~ 205 (242)
T 2qk2_A 200 LGTLIK 205 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 215
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.35 E-value=0.00094 Score=78.43 Aligned_cols=208 Identities=18% Similarity=0.098 Sum_probs=136.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++-+.+.+.++|..|...|.+....+.. ..++. .....++.+++.|.+.++.+|..|+.+|..++..-..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~--~~~~~-----~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSI--KLDDD-----SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC--SCCTT-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHccccc--CCChh-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 6677778889999999998888875433211 11111 1234567888889888999999999999999863221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-------HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-------KGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
..+ ...++.++..+.++++.++..|+.+|..++..-.. .... -...+|.|+..+.+ +.+..++..|+
T Consensus 82 -~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~--~~~~~~~~~al 155 (1230)
T 1u6g_C 82 -YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK--QEDVSVQLEAL 155 (1230)
T ss_dssp -HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC--CSCHHHHHHHH
T ss_pred -HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC--CCchHHHHHHH
Confidence 111 12356788888888888999999999988742211 1111 13467888888842 46788999999
Q ss_pred HHHHHhccC-CC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 535 GALANLAAD-DK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 535 ~~L~~l~~~-~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
.++..++.. ++ ....+ ...++.++..+.+++ ..++..|+.+|..++...+.. . . ...++.+++.+...
T Consensus 156 ~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~-----~-~-~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNI-----V-F-VDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----------C-TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHH-----H-H-HHHHHHHHHHhccC
Confidence 999999842 11 11111 224455666666654 799999999999998643321 1 1 24577777766543
No 216
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.32 E-value=8.9e-05 Score=76.57 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
.+.+..||+|++.+||+||+.+++.++++|||+|+.+..++.+|+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~ 62 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence 46699999999999999999999999999999999999888888754
No 217
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.31 E-value=9.3e-06 Score=73.30 Aligned_cols=58 Identities=9% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC
Q 007131 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (617)
+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 344555555444 2222 12344455555555554 222100 0112334555555555544
No 218
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.29 E-value=0.0016 Score=65.43 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=139.1
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhcC-----------------CH
Q 007131 383 LLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKSW-----------------RE 442 (617)
Q Consensus 383 ~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~~-----------------~~ 442 (617)
.++..+.. .+.+.+..++..|..|... +.+|..+.+.+ .++.++..+... ..
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~--------~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~ 242 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI--------PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 242 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS--------HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc--------hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccH
Confidence 34455544 3445566777777777543 34445665433 467776654421 25
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCCH--HHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-c----hHH-HHHhcCChH
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGI--NILAVLARS-MNRLVAEEAAGGLWNLSVGE-E----HKG-AIADAGGVK 513 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~i--~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~-~----~~~-~i~~~g~i~ 513 (617)
+++-.++-+++-|+.+++..+.+...+.+ +.|+.+++. ..+.+.+-++.+|.|+.... + ... .++..++ +
T Consensus 243 Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l 321 (480)
T 1ho8_A 243 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-L 321 (480)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-H
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-h
Confidence 67899999999999999988888766532 567777776 55789999999999998654 1 112 2222334 5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHH-------HHhcc---------------CCCch-HHHHHh----------CCHHHHH
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGAL-------ANLAA---------------DDKCS-MEVALA----------GGVHALV 560 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L-------~~l~~---------------~~~~~-~~i~~~----------~~~~~L~ 560 (617)
+++..|....-.++++.+..-... ..++. .+..+ +.+..+ ..++.|+
T Consensus 322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~ 401 (480)
T 1ho8_A 322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401 (480)
T ss_dssp HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence 566666542334555443332222 22221 11112 233322 2367888
Q ss_pred HHHhc---------CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 561 MLARS---------CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 561 ~ll~~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
++|.+ +.++.+..-||.=+..++..-+. -+.++.+.|+=+.+.+++.+++++||
T Consensus 402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~---gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE---SIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT---HHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHhhhccccccccCCCcceEEeecccHHHHHHHCcc---hhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 98874 22467888899999999886544 34555678988889999999988775
No 219
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=3.5e-05 Score=79.45 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=43.2
Q ss_pred CCCCCCCCHH----HHHHHHccCChHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDD----TVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e----~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
.+.+..||+| ++.+||+||+.+++.++++|||+|+.+..++.+|+.+
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4568899999 9999999999999999999999999999888999755
No 220
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.27 E-value=0.0037 Score=67.27 Aligned_cols=176 Identities=14% Similarity=0.015 Sum_probs=129.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
...++++.+.+...++-+..++..++..+.+- .+ -.+..|.+-|.++++.++..|+++|+++.. ++.
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---------~~---l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~ 139 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDV---------HL---LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEM 139 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---------HH---HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---------HH---HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHH
Confidence 56678888888898888888888876443221 11 245778888889999999999999999984 332
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
. ...++.+.++|.+.++.++..|+.++.++.. +++. ++ +.++.+..+|. +.++.++..|+.+|..+
T Consensus 140 ~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~---D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 140 C-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLN---EKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp H-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTT---CCCHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhC---CCCHhHHHHHHHHHHHH
Confidence 2 2246888999999999999999999999975 3332 22 56777777784 57889999999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhc--------------CCchhHHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARS--------------CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~--------------~~~~~~~~~a~~~L~~l~~ 584 (617)
+..++...... ...++.+++.|.. ..++..+..+..+|..++.
T Consensus 207 ~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 207 CERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp CCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 86543221122 2567888877753 1247888888899988875
No 221
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.23 E-value=0.011 Score=57.85 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=98.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++++.+++...++-...++.+++...++. + =++..|.+=++++++-+|..|.++|+++...+-
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~----------i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m- 136 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV----------I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM- 136 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG----------G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH----------H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-
Confidence 56778888888888888888888876553321 1 355677777888888889888888888865443
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
-+.+ .+.+-+.|.+.++.|+..|+-+...|.... . .+++ +.+..+-+++ .+.++.++.+|+++|..+.
T Consensus 137 ~~~l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--p-e~v~-~~~~~l~~ll---~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 137 LQAI-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCS--F-DVVK-RWVNEAQEAA---SSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--H-HHHH-TTHHHHHHHT---TCSSHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccC--H-HHHH-HHHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 2222 345777788888888888888888886432 1 1233 5777888888 3577888888888888887
Q ss_pred cCCC
Q 007131 542 ADDK 545 (617)
Q Consensus 542 ~~~~ 545 (617)
..+.
T Consensus 205 ~~d~ 208 (355)
T 3tjz_B 205 KNDR 208 (355)
T ss_dssp TTCH
T ss_pred hhch
Confidence 6543
No 222
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.15 E-value=0.0056 Score=67.13 Aligned_cols=172 Identities=19% Similarity=0.140 Sum_probs=104.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccc-h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVN-A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~-~ 459 (617)
+.|..++..++...+..|+.+|..+- ....+ ..++..|+..+.+ .+.++++.++..|+.+... +
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~-vGTgn-------------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCM-LGTGK-------------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCCC-------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhh-cccCC-------------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 56777776666655556666666431 11111 1134566665544 3677888888888766542 2
Q ss_pred hhHHHH-----------HHh-------------C---CHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCC
Q 007131 460 KVAKAV-----------AEE-------------G---GINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGG 511 (617)
Q Consensus 460 ~~~~~i-----------~~~-------------~---~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~ 511 (617)
+..+.+ ++. | +|+.|++.+.+ .++.++..|+.+|+-++...+ ..
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~ 612 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TT 612 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HH
Confidence 211111 111 1 15555555443 566788888888887765542 35
Q ss_pred hHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 512 i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++.++.+|. .+.++.+++.|+.+|+.++...+. .. ++..|..+.++.+ +.|+.+|+.+|..+..
T Consensus 613 v~rlv~~L~--~~~d~~VR~gAalALGli~aGn~~-~~-----aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 613 VPRIVQLLS--KSHNAHVRCGTAFALGIACAGKGL-QS-----AIDVLDPLTKDPV-DFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTTTGG--GCSCHHHHHHHHHHHHHHTSSSCC-HH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHhccCCCc-HH-----HHHHHHHHccCCC-HHHHHHHHHHHHHHhc
Confidence 677777665 456788888888888888754443 22 3345666666654 7888888888888865
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.14 E-value=0.0007 Score=63.70 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=46.3
Q ss_pred HhcCCCCceEeecCCCCCCH-----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCH------HH
Q 007131 201 AKLCPNLTDIGFLDCLNVDE-----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP------IT 269 (617)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~-----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~------~~ 269 (617)
.+.+|+|++|++++| .++. ..+..+++|++|++++|.--+...+..+ ..+ +|++|++.+|.+.. .-
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhH
Confidence 355677777777776 3333 2234667777777777632222222222 122 67777777766542 33
Q ss_pred HHHHHhcCCCCCEEEc
Q 007131 270 ISRLLTSSKSLKVLCA 285 (617)
Q Consensus 270 l~~~~~~~~~L~~L~l 285 (617)
...++..+|+|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3456667788877764
No 224
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.12 E-value=5.5e-05 Score=67.13 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.- .......+++
T Consensus 51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~ 125 (177)
T 2o6r_A 51 LTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTS 125 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTT
T ss_pred cccccEEECCCC-cceEeC-hhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEe-CHHHhcCCcc
Confidence 455555555554 332100 011224566666666665 2322 23455666666666665 33210 0112244667
Q ss_pred CCeEEeccCCC
Q 007131 255 LVGLDVSRTDV 265 (617)
Q Consensus 255 L~~L~l~~~~~ 265 (617)
|++|++++|.+
T Consensus 126 L~~L~l~~N~~ 136 (177)
T 2o6r_A 126 LQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCSSCB
T ss_pred cCEEEecCCCe
Confidence 77777777654
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.09 E-value=0.025 Score=62.15 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccC---------CchhHHHH-H-------hhC---CHHHHHHHHhc-
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASI---------DCGRAEAV-M-------KDG---GIRLLLDLAKS- 439 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~---------~~~~~~~i-~-------~~~---~i~~Lv~lL~~- 439 (617)
+.|+..+ ...++.+++.++.+|..+...+.+.... ++..|... . ..| +|+.|++.+.+
T Consensus 510 ~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 510 HDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 4455544 3456788888888888765444332110 01111100 0 001 23334444333
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~l 518 (617)
.++.+|..|+-+|+.++..++ ..++.++.+| .+.++.++..|+.+|+.++.+..+. .++..|..+
T Consensus 590 ~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L 655 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPL 655 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHH
Confidence 356666666666666554332 3466777754 4588999999999999998654332 234566666
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccC
Q 007131 519 IFKWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
. ++.+..|+.+|+.+|+.+-..
T Consensus 656 ~---~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 656 T---KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp H---TCSSHHHHHHHHHHHHHHSTT
T ss_pred c---cCCCHHHHHHHHHHHHHHhcC
Confidence 6 578899999999999988643
No 226
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.08 E-value=0.00011 Score=64.53 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
.+.|+++++ .++. +.. ...++|++|++++|. ++ ...+..+++|++|++++| .++.-. ......+++|++
T Consensus 11 ~~~l~~s~n-~l~~--ip~--~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGK-SLAS--VPT--GIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTS-CCSS--CCS--CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCE
T ss_pred CCEEEeCCC-CcCc--cCc--cCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCE
Confidence 456666665 3321 100 113678888888773 33 345677888888888887 343111 122356788999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++++|.++... +..+..+++|++|++++|+...+.
T Consensus 83 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999988765321 234567899999999999866554
No 227
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.07 E-value=0.0016 Score=73.31 Aligned_cols=213 Identities=13% Similarity=0.036 Sum_probs=131.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+++++++..++.+|..++....... ........++.++..+.+.+++++..|+..+..++.....
T Consensus 227 ~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM-------KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC-------HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 555666777889999999999998875433221 1122225566777777888899999999999988774321
Q ss_pred HH---------------HHHH--hCCHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 462 AK---------------AVAE--EGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 462 ~~---------------~i~~--~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
.. .+.. ...++.++..|... +..++..|..+|..++..-. ..+. ...++.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~ 376 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQ 376 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHH
Confidence 10 0100 22467777777642 23688899999998875321 1111 123344444
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccc
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (617)
.+ .+.+...++.|+.++..++.... ...+.. ...++.++..+.++ ++.++..|+++|..++..-.........
T Consensus 377 ~l---~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 377 NI---TADNWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HT---TCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred Hc---CCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 45 34678899999999999996432 122211 13566677777666 4899999999999998642210000011
Q ss_pred ccccCcHHHHHHHhcC
Q 007131 596 GQEAGALEALVQLTRS 611 (617)
Q Consensus 596 ~~~~g~~~~L~~ll~~ 611 (617)
-...++.|+..+++
T Consensus 452 --~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 452 --LPGVVQACLIGLQD 465 (861)
T ss_dssp --HHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHhcc
Confidence 13456777766654
No 228
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.06 E-value=9.4e-05 Score=66.61 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (617)
.+++|++|++++|. ++. ..+..+++|++|++++| .++.-. ......+++|++|++++|.
T Consensus 76 ~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 76 NMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence 34556666666552 222 23555666666666665 222100 1122345666666666654
No 229
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.03 E-value=0.00073 Score=63.59 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=60.5
Q ss_pred HHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCc--CCCeecccCCCCCCH------
Q 007131 173 AIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE-VALGNVL--SVRFLSVAGTSNMKW------ 242 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~--~L~~L~l~~~~~i~~------ 242 (617)
.+...+|+|++|+|+++ .++. .++..+...+|+|+.|+|++| .+++ ..+..++ +|++|++++|+ ++.
T Consensus 164 i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~ 240 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS-LCDTFRDQS 240 (267)
T ss_dssp HHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST-TGGGCSSHH
T ss_pred HHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc-CccccCcch
Confidence 34466899999999988 5543 234445567899999999998 4554 3555555 89999999985 432
Q ss_pred HHHHHHHhcCCCCCeEEec
Q 007131 243 GVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 243 ~~l~~l~~~~~~L~~L~l~ 261 (617)
.....+...+|+|+.||=.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 3345667789999998643
No 230
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.03 E-value=0.00015 Score=64.08 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++|. ++. ..+..+++|++|++++| .++.-. ......+++|++|++++|.++.-. ...+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCC
Confidence 678888888873 332 45677888888888887 443210 122356789999999998765321 23456789999
Q ss_pred EEEccCCCCCChh
Q 007131 282 VLCALNCPVLEEE 294 (617)
Q Consensus 282 ~L~l~~c~~~~~~ 294 (617)
+|++++|+...+.
T Consensus 109 ~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 109 HIYLYNNPWDCEC 121 (174)
T ss_dssp EEECCSSCBCTTB
T ss_pred EEEeCCCCccccc
Confidence 9999999866554
No 231
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.00 E-value=0.0055 Score=69.07 Aligned_cols=191 Identities=11% Similarity=0.006 Sum_probs=124.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCC------------C----cccCCchhHHHHHhhCCHHHHHHHHhc------
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVIND------------E----NASIDCGRAEAVMKDGGIRLLLDLAKS------ 439 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~------------~----~~~~~~~~~~~i~~~~~i~~Lv~lL~~------ 439 (617)
+.++..+...+++++..|+..+..++.... . .... ... +. .-...++.++..+..
T Consensus 262 ~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~ll~~ll~~l~~~~~d~~ 338 (876)
T 1qgr_A 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK-FYA-KG-ALQYLVPILTQTLTKQDENDD 338 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC-CHH-HH-HHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhH-HHH-HH-HHHHHhHHHHHHhhccccccc
Confidence 677777777788999999988888764310 0 0000 000 00 113346777777752
Q ss_pred -CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hHHHHHhcCChHHHH
Q 007131 440 -WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE--HKGAIADAGGVKALV 516 (617)
Q Consensus 440 -~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~--~~~~i~~~g~i~~L~ 516 (617)
.+..+|..|+.++..++..-.. .+. ...++.+...+.+.+..+++.|+.+|.+++.... .-.... .+.++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence 3457888999999988763221 111 1235666677778889999999999999997542 111222 34788888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhccCCCch---HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 517 DLIFKWSSGGDGVLERAAGALANLAADDKCS---MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 517 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..+. +.++.++..|++++.+++..-... .... ...++.++..+.+. +.++..|+++|.+++..
T Consensus 415 ~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 415 ELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHhC---CCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 8884 577899999999999998642211 0111 13456677776653 78999999999999864
No 232
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.97 E-value=3.9e-06 Score=83.90 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=18.5
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCR 136 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 136 (617)
+++++|+|+++....-. ....+++|++|+|+++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 45667777666443211 11245667777776664
No 233
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.007 Score=56.58 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=105.9
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCC-CcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVIND-ENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..+...+ +..+..++..|+.+|..|+..-. .. +. .-.....++.+++.+++..+.++..+..++-.++..-
T Consensus 63 ~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~-----~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 63 GIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--FS-----KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SC-----HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--cc-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 6777777 56788999999999999984332 11 10 0112235789999999888999999999988887632
Q ss_pred h-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--HH--HHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 460 K-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH--KG--AIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 460 ~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~--~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
+ ....-.-...++.|+..|++.++.+++.++.+|..+...... .. ..+....+|.|.+++. +.+..++..|.
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~ 212 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGF 212 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 1 000000011357788888889999999999999998754321 11 1222468888999994 57889999999
Q ss_pred HHHHHhcc
Q 007131 535 GALANLAA 542 (617)
Q Consensus 535 ~~L~~l~~ 542 (617)
.++..++.
T Consensus 213 ~~l~~i~~ 220 (249)
T 2qk1_A 213 ESFAILIK 220 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 234
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.84 E-value=1.5e-05 Score=79.49 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=102.3
Q ss_pred HhCCCceEEEecCCCCccHHHH---hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 100 SRCMNLQKLRFRGAESADSIIH---LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
..+++|++|+|+++.....+.. ..++++.++....+..++... ......+++|+.|+++. + .+....- ....
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~--n-~l~~~~~-~~~~ 125 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISN--T-GIKHLPD-VHKI 125 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEE--E-CCSSCCC-CTTC
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccccccccccc--c-ccccCCc-hhhc
Confidence 4568899999999876443222 245666665554444343210 12335688999999963 2 3322100 0011
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
...++..|++.++..++.-....+......++.|++++| .++. .......+|++|.++++..++.-. ...+.++++
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~ 203 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASG 203 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEEC
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcc
Confidence 234567777766544432111111222346888888887 4553 223345678888887654443211 122356788
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|+.|++++|.++.-. . ..+.+|+.|.+.++..+...
T Consensus 204 L~~LdLs~N~l~~lp--~--~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 204 PVILDISRTRIHSLP--S--YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CSEEECTTSCCCCCC--S--SSCTTCCEEECTTCTTCCCC
T ss_pred cchhhcCCCCcCccC--h--hhhccchHhhhccCCCcCcC
Confidence 999999988764211 1 23667888887777655443
No 235
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.76 E-value=0.15 Score=51.17 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=97.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCC--HHHHHHHHhcC-----------------CHHHHHHHHHH
Q 007131 433 LLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSM-----------------NRLVAEEAAGG 492 (617)
Q Consensus 433 Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~--i~~L~~lL~~~-----------------~~~~~~~a~~~ 492 (617)
++..|... +.+.+..++.+|..|...++.|..+.+.++ ++.++.++... ...++..++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 45556553 456677899999999999999999987655 67776654421 24568899999
Q ss_pred HHHhcCCcchHHHHHhcCCh--HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c-----hHHHHHhCCHHHHHHHHh
Q 007131 493 LWNLSVGEEHKGAIADAGGV--KALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-----SMEVALAGGVHALVMLAR 564 (617)
Q Consensus 493 L~nL~~~~~~~~~i~~~g~i--~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-----~~~i~~~~~~~~L~~ll~ 564 (617)
+|-|++.++....+...+.. +.|+.+++. +..+++.+-++.+|.|+...+. . .+.++..++ ..+++.|.
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~--s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKI--TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 99999999888888776643 567777774 6789999999999999987542 1 122333445 44555554
Q ss_pred cC--CchhHHHHHHH
Q 007131 565 SC--KFEGVQEQAAR 577 (617)
Q Consensus 565 ~~--~~~~~~~~a~~ 577 (617)
.. .++++.+..-.
T Consensus 329 ~rk~~Dedl~edl~~ 343 (480)
T 1ho8_A 329 ERKYSDEELRQDISN 343 (480)
T ss_dssp SSCCSSHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 31 12555444333
No 236
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.65 E-value=0.0038 Score=67.04 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=99.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH--hcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL--~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..+.+-+.+.++-++-.|+.+|.++.. ..+. ...++.+.+.| .+.++-+|..|+-++.++....
T Consensus 114 N~l~kDl~~~n~~ir~lALr~L~~i~~-------------~e~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 114 NAIKNDLASRNPTFMGLALHCIANVGS-------------REMA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHCC-------------HHHH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhccCC-------------HHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 566667778899999999999998731 1222 24568888999 7789999999999999988732
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh---cC-C----------C
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---WS-S----------G 525 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---~~-~----------~ 525 (617)
+ +.+...+.++.+.++|.+.++.|+..|+.++..++.... ..+ ...++.++..|.. .. . .
T Consensus 180 p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 180 P--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp G--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred h--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 2 122123668999999999999999999999999986432 111 1244555544431 01 1 1
Q ss_pred CHHHHHHHHHHHHHhccC
Q 007131 526 GDGVLERAAGALANLAAD 543 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~ 543 (617)
++-.+...+.+|..++..
T Consensus 254 ~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp SHHHHHHHHHHGGGSSSC
T ss_pred CchHHHHHHHHHHHhCCC
Confidence 466788888888888754
No 237
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.58 E-value=0.027 Score=55.03 Aligned_cols=101 Identities=18% Similarity=0.076 Sum_probs=76.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+.+-++++++-++-.|+++|+++.... - .+. ..+.+.+.|.+.++-++..|+-+..+|....+
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m--------~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p- 171 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST-M--------LQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF- 171 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT-T--------HHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH-H--------HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-
Confidence 67778888889999999999999873111 1 012 33567777888899999999999888876432
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
+.+ .+.++.+-+++.+.++.++.+|..+|..+...+
T Consensus 172 -e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 172 -DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 222 257888999999999999999999999998643
No 238
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.44 E-value=0.00032 Score=71.05 Aligned_cols=124 Identities=10% Similarity=0.167 Sum_probs=70.7
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecCCCC-------CC
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDCLN-------VD 219 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~~~-------~~ 219 (617)
.+|++|+.+++.. ....+....+. ..+|+.+.+... ..+... ....|++|+.+.+.++.. +.
T Consensus 223 ~~~~~L~~l~l~~-~l~~I~~~aF~-----~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 223 LKTSQLKTIEIPE-NVSTIGQEAFR-----ESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp TTCTTCCCEECCT-TCCEECTTTTT-----TCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred hCCCCCCEEecCC-CccCccccccc-----cCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEEC
Confidence 3466777777742 22222222221 146777766532 112222 234678888888876532 44
Q ss_pred HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC--CCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 220 EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 220 ~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+..+.+|++|+.+.+... ++.-+ ...+.+|++|+.+.+..+ .++.. .+.+| +|+.+++.++.
T Consensus 293 ~~aF~~c~~L~~l~l~~~--i~~I~-~~aF~~c~~L~~l~lp~~l~~I~~~----aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPES--IRILG-QGLLGGNRKVTQLTIPANVTQINFS----AFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCCSCCEEEECTTCCEECTT----SSSSS-CCCEEEECCSS
T ss_pred HHHhhCCccCCeEEeCCc--eEEEh-hhhhcCCCCccEEEECccccEEcHH----hCCCC-CCCEEEEcCCC
Confidence 566788888888888642 32111 122456888888888664 22333 34567 88888888764
No 239
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.37 E-value=0.033 Score=59.73 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=105.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
...++++.+++...++-+..++..++..+.+ .+ .-.+..+.+=|.++++-++..|+++++++.. ++.
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e----------~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~ 143 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSE----------LI--RLINNAIKNDLASRNPTFMGLALHCIANVGS-REM 143 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH----------HH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcH----------HH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHH
Confidence 6778889999999999999999988644322 11 1134567777888899999999999999965 332
Q ss_pred HHHHHHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
.+. .++.+.++| .+.++.|++.|+.++..+..... .++. .+.++.+.++|. +.++.++.+|+.++.
T Consensus 144 ~~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 144 AEA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLN---DQHLGVVTAATSLIT 212 (621)
T ss_dssp HHH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhC---CCCccHHHHHHHHHH
Confidence 332 357788999 78999999999999999975221 1222 478999999994 578899999999999
Q ss_pred HhccCC
Q 007131 539 NLAADD 544 (617)
Q Consensus 539 ~l~~~~ 544 (617)
.++..+
T Consensus 213 ~i~~~~ 218 (621)
T 2vgl_A 213 TLAQKN 218 (621)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998644
No 240
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.28 E-value=0.00093 Score=58.60 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.-. ......+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCC
Confidence 45666666655 332210 111234566777777666 3332 23456677777777766 332100 1123456777
Q ss_pred CeEEeccCCC
Q 007131 256 VGLDVSRTDV 265 (617)
Q Consensus 256 ~~L~l~~~~~ 265 (617)
++|++++|.+
T Consensus 105 ~~L~L~~N~~ 114 (170)
T 3g39_A 105 THIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeCCCCC
Confidence 7777777654
No 241
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.21 E-value=0.00097 Score=58.71 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.-. ......+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeC-HHHhccccCC
Confidence 45666666655 332210 112234566777777766 3332 23456677777777775 332100 1123456777
Q ss_pred CeEEeccCCC
Q 007131 256 VGLDVSRTDV 265 (617)
Q Consensus 256 ~~L~l~~~~~ 265 (617)
++|++++|.+
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 7777777654
No 242
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.98 E-value=0.12 Score=48.83 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
...+...|.-|--+.+.-+.+++.+||..+..+...++.++..+.+..|...+.....+..-. .+.+|-++..++. .
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~--h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEI--H 336 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhcc--C
Confidence 344445555555566678899999999999999999999999999999999887654433222 3578888888874 6
Q ss_pred CCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcC------CchhHHHHHHHHHHH
Q 007131 525 GGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSC------KFEGVQEQAARALAN 581 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~------~~~~~~~~a~~~L~~ 581 (617)
+++++.+...+-|.|+..+... ++..+..|+++.|-..+... .+..-+..||++++|
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 7789999999999999887755 66667888999888866432 123345556766665
No 243
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.95 E-value=0.0024 Score=63.29 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCceEeecC-CCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 204 CPNLTDIGFLD-CLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 204 ~~~L~~L~l~~-~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
+++|++|+|++ | .++. ..+..+++|++|++++| .++... ...+.++++|++|+|++|.++.-. +.++..++
T Consensus 30 ~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~- 104 (347)
T 2ifg_A 30 AENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS- 104 (347)
T ss_dssp CSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-
T ss_pred CCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-
Confidence 34566666654 3 3332 33556666666666665 332210 112345666777777666554211 12223333
Q ss_pred CCEEEccCCCCCChhHH
Q 007131 280 LKVLCALNCPVLEEENN 296 (617)
Q Consensus 280 L~~L~l~~c~~~~~~~~ 296 (617)
|+.|++.+|+..-+..+
T Consensus 105 L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp CCEEECCSSCCCCCGGG
T ss_pred ceEEEeeCCCccCCCcc
Confidence 77777777776655543
No 244
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.84 E-value=0.33 Score=54.03 Aligned_cols=193 Identities=16% Similarity=0.078 Sum_probs=123.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
++.+++.+......++..|..++..+...-... .+ ...+|.|+..+.+. ....+..|+.++..|+...
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~---------a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPV---------AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG---------GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH---------HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 366666666666788877777777665332221 12 55689999999876 6889999999999999754
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----------HHHHHhcCChHHHHHHHh---------
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH----------KGAIADAGGVKALVDLIF--------- 520 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~----------~~~i~~~g~i~~L~~ll~--------- 520 (617)
...-...-...||.+.+.+-+..+++...|..++..++..=.| -..|.+..-+|.-++.|.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeec
Confidence 3222222244578888888888889999888888887752222 122222333333333332
Q ss_pred ------------h-cCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 521 ------------K-WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 521 ------------~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+ -......++++++-++-|||.--++...+.. ...+|.+-+....-.++++++.|..++..|-.
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 1 0123567789999999999976555444332 34555565555554458999998888888754
No 245
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.87 Score=39.06 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=101.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~~ 459 (617)
..++..|..+-..+|.+|+..+..++...++.. ...+..|+-+++.+ .-..-...+.+++-++. .+
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~------------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLY------------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH------------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH------------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 566777776667789999999998864433321 12334555565543 44454555666666665 33
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.-.. .||.+..-..-+++.++.+...+|..++. +|..-.. .+..+..++. +.+..-+..|+.-+.
T Consensus 103 e~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smlt---skd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 103 ELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLS---SKNREDKLTALNFIE 169 (253)
T ss_dssp HHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTS---CSSHHHHHHHHHHHH
T ss_pred HHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 32111 24555555555778888877778777763 4333322 3344556663 344333444444444
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.+ +++...-+. ..+|.|..+|.+.+ +-|+..|+.+|.+++..
T Consensus 170 al---Gen~~~yv~-PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 170 AM---GENSFKYVN-PFLPRIINLLHDGD-EIVRASAVEALVHLATL 211 (253)
T ss_dssp TC---CTTTHHHHG-GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTS
T ss_pred HH---hccCccccC-cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHc
Confidence 33 334333332 56677777777765 77788888888888763
No 246
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.44 E-value=0.001 Score=67.30 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=77.5
Q ss_pred cCCCccEEeccCCC--CCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHH
Q 007131 123 QARNLRELSGDYCR--KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINA 199 (617)
Q Consensus 123 ~~~~L~~L~l~~~~--~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~ 199 (617)
.|++|+.+++..+. .+.+..+. |.+|+.+.|.. ....+.+.. ...|++|+.+.+... ..+....+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~-~l~~I~~~a----F~~~~~L~~l~l~~~l~~I~~~aF~- 246 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPV-TLKEIGSQA----FLKTSQLKTIEIPENVSTIGQEAFR- 246 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCT-TCCEECTTT----TTTCTTCCCEECCTTCCEECTTTTT-
T ss_pred CcccCCeeecCCCcceEechhhEe-----ecccCEEEeCC-chheehhhH----hhCCCCCCEEecCCCccCccccccc-
Confidence 46666666665432 12222221 45666666641 222222221 234677777777642 123332221
Q ss_pred HHhcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCCCC-------CCHHHHHHHHhcCCCCCeEEeccC--CCCHHH
Q 007131 200 LAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSN-------MKWGVVSQVWHKLPKLVGLDVSRT--DVGPIT 269 (617)
Q Consensus 200 l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~-------i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~ 269 (617)
. .+|+.+.+... ..+.+..+..|++|+.+.+.++.. +. ...+.+|++|+.+++..+ .++..
T Consensus 247 ---~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~----~~aF~~c~~L~~l~l~~~i~~I~~~- 317 (401)
T 4fdw_A 247 ---E-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH----PYCLEGCPKLARFEIPESIRILGQG- 317 (401)
T ss_dssp ---T-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC----TTTTTTCTTCCEECCCTTCCEECTT-
T ss_pred ---c-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC----HHHhhCCccCCeEEeCCceEEEhhh-
Confidence 2 46777777543 234456677888888888866421 21 123456888888888753 12222
Q ss_pred HHHHHhcCCCCCEEEccCC
Q 007131 270 ISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 270 l~~~~~~~~~L~~L~l~~c 288 (617)
.+.+|++|+.+.+..+
T Consensus 318 ---aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 318 ---LLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ---TTTTCCSCCEEEECTT
T ss_pred ---hhcCCCCccEEEECcc
Confidence 3456888888888644
No 247
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.33 E-value=0.07 Score=59.30 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhC
Q 007131 394 DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEG 469 (617)
Q Consensus 394 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~ 469 (617)
+.+..++..+..+........ ....+.+..|.+.+.+.... +.|+.++..|+.... .-..+ .+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~ 95 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEH---------DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQ 95 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSS---------SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HT
T ss_pred hHHHHHHHHHHHHHhcccccc---------ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HH
Confidence 334666667776643322221 11236677888888765333 899999999996332 21222 24
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (617)
-++.++....+....|+++|..++..+.. .+... ...+|.|+..|.. +..-+.+..|+.++..|+...+..
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~--~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE--TNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhHHH
Confidence 67888888888888899888877777753 22222 2357888888863 456788899999999999644322
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
....=...+|.+.+.+.+.. .+|+.+|..++..+|..-++. .+ ...+|.|++.+.++.
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~----d~---~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNK----DI---ERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCT----TT---GGGHHHHHHHHHCTT
T ss_pred HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCc----ch---hhhHHHHHHHhcChh
Confidence 22222356788888887765 899999999999999855542 22 346888888887763
No 248
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.69 E-value=0.23 Score=47.41 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHH
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA-DAGGVKALVD 517 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~-~~g~i~~L~~ 517 (617)
.+..+..++++++|+..++..+..+.... .++.+...+...+..++.+++..+.|+|.........- ....+..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 56678999999999999999988877531 13333333344688899999999999986321000000 0113333444
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHH-HHhcCCchhHHHHHHHH
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARA 578 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~-ll~~~~~~~~~~~a~~~ 578 (617)
++. ...+.+....++-+|.+|...+.....+.+.-++...++ ....+.+.++.+.|..+
T Consensus 241 il~--~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 241 ILE--VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHT--TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHh--ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 454 346789999999999999977655555555444444443 44443445655554443
No 249
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=93.87 E-value=2.8 Score=35.98 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=115.2
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
..|+.|+ +++.-......+.++.-++...++. -.+.+|.+..=..-++++++.....+|..++. ++
T Consensus 72 ~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~------------v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP 139 (253)
T 2db0_A 72 KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL------------VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP 139 (253)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH------------HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH------------HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh
Confidence 5566666 4666666667777888776443321 11234455544555799999999999999887 56
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
+.-..+ +.-+..++.+++..=+..|+..+..+..+ ...-+. -.+|.|..+| ++.++-++..|..+|.+
T Consensus 140 ~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen---~~~yv~-PfLprL~aLL---~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 140 MLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGEN---SFKYVN-PFLPRIINLL---HDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTT---THHHHG-GGHHHHHGGG---GCSSHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhcc---CccccC-cchHHHHHHH---cCcchhhhHHHHHHHHH
Confidence 654444 44577888888876666666666666543 333333 3688999999 56888999999999999
Q ss_pred hccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 540 LAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 540 l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++...+. |..+. ..++-+.+. ++.++..+..+|..|+.
T Consensus 208 lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 208 LATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 9976554 32222 233333333 47888889899988875
No 250
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.54 E-value=2.9 Score=47.27 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcc-cCCc----hhHHHHHhhCCHHHHHHHHhcC---CHHHHHHHHHHHHHhccchhh
Q 007131 390 STQEDVQERAATGLATFVVINDENA-SIDC----GRAEAVMKDGGIRLLLDLAKSW---REGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~----~~~~~i~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...++.|+.++..++....... .... ..-..+. ...++..|.++ ++-+|..|++++..++..- .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-C
Confidence 3455677888888988864321110 0000 0001111 12234445666 7899999999999998742 1
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--------c-hHHHHHh--cCChHHHHHHHhhcCCCC-HH-
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--------E-HKGAIAD--AGGVKALVDLIFKWSSGG-DG- 528 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--------~-~~~~i~~--~g~i~~L~~ll~~~~~~~-~~- 528 (617)
.+.+ ...++.+++.|.+++..|+.+|+.||.+++... + .+..+.. ...++.|+.++.. .... .+
T Consensus 491 ~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~-~~~~~~~~ 567 (960)
T 1wa5_C 491 KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK-HGSSPEKL 567 (960)
T ss_dssp HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT-TCCCHHHH
T ss_pred HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh-ccCCCCcc
Confidence 2222 224677888888888899999999999998632 1 1232321 2344455556653 1000 01
Q ss_pred -HHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHH----hcCCchhHHHHHHHHHHHHhcc
Q 007131 529 -VLERAAGALANLAA--DDKCSMEVALAGGVHALVMLA----RSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 529 -~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll----~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
....++.++..++. .++... ... ..++.|+..+ +++++......++.+|..+...
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 12344455544432 122211 111 1334444433 2343456666788888888764
No 251
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.98 Score=42.58 Aligned_cols=188 Identities=12% Similarity=-0.000 Sum_probs=112.2
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh-CCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hh
Q 007131 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-GGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AK 460 (617)
Q Consensus 384 l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~ 460 (617)
+-+-+.+.+...|..|+..|..+.........-+ ..+... ...+.+-+.+.+.|..++..++.++..++.. ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~----~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRD----DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC--------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccch----hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 4467788899999999998887643322110000 011112 2345566677888999999999999988752 11
Q ss_pred --hHHH--HHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 461 --VAKA--VAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 461 --~~~~--i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.+.. ..-...++.|++ .|.+..+.++..|..++..++........+ ++.++..+ .+.++.++..++.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l---~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFF---EKKLPKLIAAAAN 161 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGG---GCSCHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHH---hccCHHHHHHHHH
Confidence 1111 111223566665 366677888888888877665332111111 23333344 3568899999998
Q ss_pred HHHHhccC--CC--chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 536 ALANLAAD--DK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 536 ~L~~l~~~--~~--~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+|..+-.. .. .....+. ..++.+..++.+.+ ..||..|..++..+...
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGD-RNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSS-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHH
Confidence 88887531 11 1111111 23455677778875 89999999999988763
No 252
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.25 E-value=2.2 Score=42.12 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHHHhhCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhccchhhHHHHHHhC-CHHHHHHHHhcCCHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKS-----------WREGLQSEAAKAIANLSVNAKVAKAVAEEG-GINILAVLARSMNRLVAEEA 489 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-~i~~L~~lL~~~~~~~~~~a 489 (617)
+.+. .+|+..|+.+|.. .+...+..++.+|+.+..+..+...+.... +|..|+..|.+..+.++..|
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3454 6778888888852 134678889999999999888887777644 48999999988999999999
Q ss_pred HHHHHHhcCCcc--h-HHHH----------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHH
Q 007131 490 AGGLWNLSVGEE--H-KGAI----------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SME 549 (617)
Q Consensus 490 ~~~L~nL~~~~~--~-~~~i----------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~ 549 (617)
+..|..+|..++ + ...+ .+..-...++..|.. ..+.+.+..++..+-.+....+. |..
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc--cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999998886543 2 3322 234556777777753 35667777777777777655543 445
Q ss_pred HHHhCCHHHHHHHHhcC
Q 007131 550 VALAGGVHALVMLARSC 566 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~ 566 (617)
+...|..+.+- -++..
T Consensus 261 f~~~Gl~~il~-~lr~~ 276 (383)
T 3eg5_B 261 LMRLGLHQVLQ-ELREI 276 (383)
T ss_dssp HHHTTHHHHHH-HHTTS
T ss_pred HHHCChHHHHH-HHhcC
Confidence 55555555444 45543
No 253
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.17 E-value=1.1 Score=40.64 Aligned_cols=174 Identities=13% Similarity=0.026 Sum_probs=120.8
Q ss_pred HHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhcc--chhhHHHHHHhC
Q 007131 397 ERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-----EGLQSEAAKAIANLSV--NAKVAKAVAEEG 469 (617)
Q Consensus 397 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~ls~--~~~~~~~i~~~~ 469 (617)
-+|+..|..+|++ |+.|..+.++...--|..+|...+ +-+|-.+.++++.|.. +++.-..+.+.+
T Consensus 74 cnaLaLlQcvAsh--------petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 74 CNALALLQCVASH--------PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHC--------TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--------cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 3555566666644 344578889988888888887653 4578999999999997 444555666788
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--------cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--------AGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--------~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.||..++.++.+++-.+.-|.-++..+-.++.+-.-+.. ...+..++.-+. ...++.+.+.+.+|-.-|+
T Consensus 146 iiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~--~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 146 IIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS--KEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHh
Confidence 899999999999998888888888877766543322221 123344444443 3567899999999999999
Q ss_pred cCCCchHHHHHhCC--H--HHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 542 ADDKCSMEVALAGG--V--HALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 542 ~~~~~~~~i~~~~~--~--~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.++..++.+.+.=- + ..+..++++ ++.++.+-...+.|+
T Consensus 224 dn~rar~aL~~~LP~~Lrd~tf~~~l~~--D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 224 DNPRAREALRQCLPDQLKDTTFAQVLKD--DTTTKRWLAQLVKNL 266 (268)
T ss_dssp TSHHHHHHHHHHSCGGGTSSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhCcHHhhChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 99888888875210 0 112334443 367788777777776
No 254
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.00 E-value=2 Score=39.11 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=97.0
Q ss_pred hhCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHhccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 426 KDGGIRLLLDLAKSW-----------REGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGL 493 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L 493 (617)
..+|+..|+..|..- +.+.+..++.+|..+..+..+...+... +++..++..|.++++.++..|+..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 467777777776531 3466888899999999988888877764 4588888888888999999999999
Q ss_pred HHhcCCcc--h-HHHHH----------hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHHHHHh
Q 007131 494 WNLSVGEE--H-KGAIA----------DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SMEVALA 553 (617)
Q Consensus 494 ~nL~~~~~--~-~~~i~----------~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~ 553 (617)
..+|..++ + ...+. +..-...+++.+.. ....+.+.+++..+-.+....+. |..+...
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~ 198 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL 198 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 88886543 3 33332 23455667776652 35567777777777777655543 4455555
Q ss_pred CCHHHHHHHHhcCCchhHHHH
Q 007131 554 GGVHALVMLARSCKFEGVQEQ 574 (617)
Q Consensus 554 ~~~~~L~~ll~~~~~~~~~~~ 574 (617)
|. ..+++-++...++++..+
T Consensus 199 Gl-~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 199 GL-HQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TH-HHHHHHHHHCCCHHHHHH
T ss_pred Ch-HHHHHHHhccCCHHHHHH
Confidence 55 444455554434555444
No 255
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.68 E-value=0.03 Score=55.27 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=55.2
Q ss_pred eEeecCCCCCCH--HHHhcCcCCCeecccC-CCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEc
Q 007131 209 DIGFLDCLNVDE--VALGNVLSVRFLSVAG-TSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCA 285 (617)
Q Consensus 209 ~L~l~~~~~~~~--~~l~~~~~L~~L~l~~-~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 285 (617)
.++.+++..++. . +..+++|++|++++ | .++.-. ...+.++++|+.|+|++|.++... +..+.++++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLE-LRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEEC-GGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcC-hhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeC
Confidence 345555422332 2 77788999999996 5 443211 122457899999999999876532 345678999999999
Q ss_pred cCCCCCC
Q 007131 286 LNCPVLE 292 (617)
Q Consensus 286 ~~c~~~~ 292 (617)
++|.+..
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 9998654
No 256
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.39 Score=45.42 Aligned_cols=175 Identities=16% Similarity=0.025 Sum_probs=101.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchh---hHHHHH-HhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc----chH
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAK---VAKAVA-EEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGE----EHK 503 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~---~~~~i~-~~~-~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~----~~~ 503 (617)
|-+-|.+.+...|..|...|..+..... ..+... ..+ ..+.+-..+.+.|..++..|+.++..++..- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577888999999999998887665322 112211 122 2456667788899999999999998886432 111
Q ss_pred H--HHHhcCChHHHHHH-HhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 504 G--AIADAGGVKALVDL-IFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 504 ~--~i~~~g~i~~L~~l-l~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
. ...-...++.|+.- + .+....++..|..++..++........+ ++.+...+.+.+ ++++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l---~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Kn-pkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGL---TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKL-PKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSC-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccC-HHHHHHHHHHHH
Confidence 1 11123355666553 4 3567788888988888776433322222 234445555654 788888888887
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+-..-..........+ ..+++.+..++.+.+++||
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR 200 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVR 200 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHH
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHH
Confidence 76542111110100000 1234455666777776665
No 257
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.79 E-value=0.082 Score=53.14 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=15.0
Q ss_pred cCCCCceEeecCC-CCCCHHHHhcCcCCCeecc
Q 007131 203 LCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSV 234 (617)
Q Consensus 203 ~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l 234 (617)
.|++|+.+.+... ..+.+.++.+|.+|+.+.|
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEE
Confidence 4455555555332 2233344455555555555
No 258
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.78 E-value=9.2 Score=36.42 Aligned_cols=197 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.-+..-+-+.+..+..+..++.+.....+ .-....+.. -|.++..|-.+ ++++--.+=..|+.++.++
T Consensus 81 ~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~---~p~v~Yl~~---~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 81 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTR---TPTVEYICT---QQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB---CHHHHHHHT---CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred HHHHHhcccCCchhhccHHHHHHHHHhcccCCC---CchhHHHHc---CHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 677777777777888999999998877655442 112233433 14444444332 6777777778899999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.....+...+.+..+.+....++=++...|..++..|- .++.....+... ..+...-.+| .+++--.++.++.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll---~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL---HSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT---TCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh---cCCcchhHHHHHH
Confidence 98888888888889999998899899999988888774 444555555552 2445566677 4678789999999
Q ss_pred HHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.|+.+-.+..+...|... .-+..++.+|++.. ..++..|..+..-..+.+..
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCC
Confidence 999999998887766553 33677888888874 89999999998887775444
No 259
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.10 E-value=0.11 Score=47.94 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=15.2
Q ss_pred hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHH
Q 007131 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 547 ~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
|..+.+.-+.+.|..+ .++ +..|+..|...
T Consensus 211 R~~aa~~l~~~~L~~L-~D~-~~~VR~aa~~~ 240 (244)
T 1lrv_A 211 RLAAVEHASLEALREL-DEP-DPEVRLAIAGR 240 (244)
T ss_dssp HHHHHHHSCHHHHHHC-CCC-CHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHc-cCC-CHHHHHHHHHH
Confidence 3333333334445444 444 47777777644
No 260
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.92 E-value=0.22 Score=50.71 Aligned_cols=204 Identities=14% Similarity=0.006 Sum_probs=124.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccC-CchhHHHHHhhCCHHHHHHHHh-c---------CCHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASI-DCGRAEAVMKDGGIRLLLDLAK-S---------WREGLQSEAAK 450 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~i~~~~~i~~Lv~lL~-~---------~~~~~~~~a~~ 450 (617)
+.|+..|-++..++|.-|+.+|+.+.+........ +..+ ....-.++-+|. + .-..+|+.|+.
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N------~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD------SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC------TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc------HHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 67777777888999999999999886554321000 0001 022222222222 1 12579999999
Q ss_pred HHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHH
Q 007131 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 451 ~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
+|+.+ .+-+.. ...+..|+..+....-+++..+.-.|..+ .+.-..+ .++++.++..|. +.+++|+
T Consensus 251 tLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~L--d~Vv~aVL~GL~---D~DDDVR 316 (800)
T 3oc3_A 251 LLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVEDK--DGLCRKLVSLLS---SPDEDIK 316 (800)
T ss_dssp HHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCCH--HHHHHHHHHHTT---CSSHHHH
T ss_pred HHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHHH--HHHHHHHHhhcC---CcccHHH
Confidence 99998 632221 33345555555667889999999999988 1111111 345677777774 5788999
Q ss_pred HHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCc-hhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHh
Q 007131 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT 609 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll 609 (617)
..|+.+|.-++ .++.-. ..+..+...|.+-++ .......+..|+.|+..+.. + ......+|.|...+
T Consensus 317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a--~~dp~LVPRL~PFL 384 (800)
T 3oc3_A 317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----L--SIPPERLKDIFPCF 384 (800)
T ss_dssp HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----C--CCCSGGGGGTGGGG
T ss_pred HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----c--ccChHHHHHHHhhh
Confidence 99999999999 222211 233455666654332 34556677888888886642 1 11346778887777
Q ss_pred cCCCCCCC
Q 007131 610 RSPHEGVR 617 (617)
Q Consensus 610 ~~~~~~vr 617 (617)
+++-..||
T Consensus 385 RHtITSVR 392 (800)
T 3oc3_A 385 TSPVPEVR 392 (800)
T ss_dssp TCSSHHHH
T ss_pred cCCcHHHH
Confidence 77655554
No 261
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=90.78 E-value=5.1 Score=36.42 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=109.6
Q ss_pred ccCCccchHHHHhcCh-HHHHHhhccC-----CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc
Q 007131 366 ESNPQGLDDFWLKQGA-GLLLSLMQST-----QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (617)
Q Consensus 366 ~~~~~~~~~~~~~~~i-~~l~~~l~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~ 439 (617)
++++.-... +..+.+ -.+..+|+.. .+-++..+++++..|.+.++... -..+.+.+.+|..++.++.
T Consensus 84 Ashpetr~~-Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV------i~fLL~tEiiplCLrime~ 156 (268)
T 2fv2_A 84 ASHPETRSA-FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV------INFLLTTEIIPLCLRIMES 156 (268)
T ss_dssp HHCTTTHHH-HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH------HHHHHHTTHHHHHHHHHHH
T ss_pred HcCcchhhH-HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH------HHHHHhhhHHHHHHHHHhh
Confidence 334444444 457777 4666777543 35678899999999986654321 2456688999999999999
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhC--------CHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc-
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEG--------GINILAV-LARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA- 509 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--------~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~- 509 (617)
+++-.+..|+-++..+-.++.+-..+.+.. .+..++. +.+.+++.+.+....+-..|+.++..|..+...
T Consensus 157 GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 157 GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999999999998888765554311 1222222 223578889999999999999999888877651
Q ss_pred -CCh--HHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 510 -GGV--KALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 510 -g~i--~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
..+ ..+...++ +++.+++--...+.|+
T Consensus 237 P~~Lrd~tf~~~l~----~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 237 PDQLKDTTFAQVLK----DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp CGGGTSSTTHHHHT----SCHHHHHHHHHHHHHS
T ss_pred cHHhhChHHHHHHh----cCHHHHHHHHHHHHhc
Confidence 111 01223332 4556666555555554
No 262
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.30 E-value=9.5 Score=36.15 Aligned_cols=152 Identities=12% Similarity=-0.002 Sum_probs=98.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhc----CCHHHHHHHHHHHHHhcCCcchH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARS----MNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~----~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
.+..+.+++ +-..+.+--+..+++-++.++.....+...+.-..++. ++.. ..+..+--++.++.|+-..+..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345666665 44556677778888877777776666654433334442 3222 34566788999999999888888
Q ss_pred HHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCC---CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADD---KCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL 579 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L 579 (617)
..+.. -...+++.+.. ..+.+..++..++.++.|++..- ...+... ..+..+..++....+.+....+..+|
T Consensus 183 ~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 183 KLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 87775 23445555443 14467889999999999998521 1111111 13344455565555689999999999
Q ss_pred HHHhcc
Q 007131 580 ANLAAH 585 (617)
Q Consensus 580 ~~l~~~ 585 (617)
.+|...
T Consensus 259 GtL~~~ 264 (304)
T 3ebb_A 259 GTLISD 264 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999863
No 263
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.77 E-value=2.3 Score=39.42 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|.+++-+-...+.++..+-.++..+.... --....+.++.-+++.|...++.++..+..+....-.
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~--------------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVV--------------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHH--------------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888887777788888877777664211 1122345666777888999999999999888652111
Q ss_pred HHHHHHhCCH---HHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGI---NILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 462 ~~~i~~~~~i---~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
. ...++ +.+..++.+.+..|+.+|..++..+
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 23468 9999999999999999999888755
No 264
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=89.74 E-value=2.8 Score=39.76 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHH
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINIL 474 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L 474 (617)
+...+...|.-| ..+.... +-++..+++..+.....-++.++.+..+..|..+|.....+..- -..-+|.+
T Consensus 259 VvtR~FDLL~LL-mHdSnAI-------DGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi 329 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAI-------DGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFL 329 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHH-------HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHH
T ss_pred HHHHHHHHHHHH-hcccccc-------cceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHH
Confidence 345555555554 4433332 56788999999999999999999999999999887654422110 01236777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhh
Q 007131 475 AVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFK 521 (617)
Q Consensus 475 ~~lL~~-~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~ 521 (617)
++.+.- +++++.....+.|.|..... ..++..+..|+++.|-+.+.+
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 777764 78899999999999998877 567777789999999988765
No 265
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.40 E-value=2.2 Score=39.60 Aligned_cols=176 Identities=10% Similarity=-0.030 Sum_probs=111.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh----cCCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK----SWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~----~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+...+-+.+...+..|+..|........ ..+ ...+..+++++. +.+..+...++.+|..+..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~----------~~~--~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~ 116 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP----------RSL--LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVE 116 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH----------HHH--HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh----------HHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 556667767777777888887776432211 111 122334555543 6788898888888887654
Q ss_pred c---hhhHHHHHHhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 458 N---AKVAKAVAEEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 458 ~---~~~~~~i~~~~-~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
. .+.+..-.+.+ .+|.|+.=+....+.+++.+-.++..+..-. --...++.++..+. +.+...+..+
T Consensus 117 ~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~k---sKN~R~R~e~ 187 (266)
T 2of3_A 117 LIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALK---SKNARQRSEC 187 (266)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGG---CSCHHHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHc---cCCHHHHHHH
Confidence 1 11110001111 2688888888888899998888887765311 01123445556553 4678999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCH---HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAAD-DKCSMEVALAGGV---HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~---~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+..+..+-.. +-. ...++ +.+..++.+.+ ..|+..|..++..+-.
T Consensus 188 l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 188 LLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 9988888532 222 13467 88888888875 8999999999987764
No 266
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.18 E-value=0.017 Score=58.20 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=49.0
Q ss_pred hcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC--CCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~ 278 (617)
..|++|+.+.+... ..+.+.++..|++|+.+++... ++.-+ ...+.+|.+|+.+++..+ .++..+ +.+|+
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~-~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~ 366 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL--VEEIG-KRSFRGCTSLSNINFPLSLRKIGANA----FQGCI 366 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCEECCCTTCCEECTTT----BTTCT
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCc--ccEEh-HHhccCCCCCCEEEECccccEehHHH----hhCCC
Confidence 35677888877543 2345566778888888887542 22111 122356888888888764 233333 45688
Q ss_pred CCCEEEccCC
Q 007131 279 SLKVLCALNC 288 (617)
Q Consensus 279 ~L~~L~l~~c 288 (617)
+|+.+++...
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 8888887643
No 267
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.49 E-value=0.24 Score=49.69 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=59.7
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecC-CCCCCHHHHhcC
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLD-CLNVDEVALGNV 226 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~l~~~ 226 (617)
+|+.|+.+.++. ....+.+.. ...|.+|+++.+... ..+.+.. ...|.+|+++.+.. ...+.+.++.+|
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF~~C 356 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESV----FAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAFSNC 356 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGGTTC
T ss_pred cccccccccCCC-cccccCcee----ecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHhhCC
Confidence 466677776641 222233222 235889999999753 2344433 34789999999965 346777889999
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (617)
++|+.+.+.++. ... .-...|.+|+.+.+..+
T Consensus 357 ~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 357 TALNNIEYSGSR----SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEESSCH----HHH-HTCBCCCCC--------
T ss_pred CCCCEEEECCce----eeh-hhhhccCCCCEEEeCCC
Confidence 999999998741 111 12356788888877664
No 268
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.87 E-value=13 Score=36.78 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=93.4
Q ss_pred hCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHhccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 427 DGGIRLLLDLAKSW-----------REGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLW 494 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~ 494 (617)
.+|+..|+..|..- +.+.+..++.+|..+..+..+...+... +++..++..|...++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 57777788777521 3467888899999999988888777764 45888888888888999989998888
Q ss_pred HhcCCcc--h-HHHH----------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHHHHHhC
Q 007131 495 NLSVGEE--H-KGAI----------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SMEVALAG 554 (617)
Q Consensus 495 nL~~~~~--~-~~~i----------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~~ 554 (617)
.+|..++ + ...+ .+..-...+++.+.. +...+.+..++..+-.+....+. |..+...|
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 203 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 8886543 3 2222 233466667777753 45667777777777777665554 55555555
Q ss_pred CHHHHHHHHhc
Q 007131 555 GVHALVMLARS 565 (617)
Q Consensus 555 ~~~~L~~ll~~ 565 (617)
..+ ++.-++.
T Consensus 204 L~~-il~~Lr~ 213 (386)
T 2bnx_A 204 LHQ-VLQELRE 213 (386)
T ss_dssp HHH-HHHHHTT
T ss_pred hHH-HHHHHhc
Confidence 544 4455554
No 269
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.97 E-value=4.8 Score=45.52 Aligned_cols=192 Identities=10% Similarity=0.020 Sum_probs=108.3
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
..+..++. +.++++|..|+.+|.+......... .+.. +..+....++.+...- ...+.++...+.++..++...-
T Consensus 42 ~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l--~~~~-~~~ir~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 42 QFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEV--PPEN-REELKQKILESIVRFA-GGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGC--CGGG-HHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhC--CHHH-HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcc
Confidence 56677774 4678999999999999765543332 2222 2223333333333332 2357899999999999887543
Q ss_pred hHHHHHHhCCHHHHHHHHhcC------CHHHHHHHHHHHHHhcCC-----c-chHHHHHh--cCChHHHHHHH----hhc
Q 007131 461 VAKAVAEEGGINILAVLARSM------NRLVAEEAAGGLWNLSVG-----E-EHKGAIAD--AGGVKALVDLI----FKW 522 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~------~~~~~~~a~~~L~nL~~~-----~-~~~~~i~~--~g~i~~L~~ll----~~~ 522 (617)
. ...+.++.++..+.++ ++...+.+..+|..++.. . ..+..+.+ ...++.++.++ ...
T Consensus 118 p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~ 193 (971)
T 2x1g_F 118 G----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQ 193 (971)
T ss_dssp C----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred c----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 3456788899998775 566788888888877631 1 11211111 12455554444 321
Q ss_pred CCCC-----HHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHh-----------c----CCchhHHHHHHHHHH
Q 007131 523 SSGG-----DGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLAR-----------S----CKFEGVQEQAARALA 580 (617)
Q Consensus 523 ~~~~-----~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~-----------~----~~~~~~~~~a~~~L~ 580 (617)
.+.. ..+...++.|+..... .-+.. .....++.+.. +. + .+.+++++.|+.++.
T Consensus 194 ~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 269 (971)
T 2x1g_F 194 MNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMV 269 (971)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHH
Confidence 1111 1688888888876544 22211 22344555555 31 0 023688889999999
Q ss_pred HHhcc
Q 007131 581 NLAAH 585 (617)
Q Consensus 581 ~l~~~ 585 (617)
.+...
T Consensus 270 ~i~~~ 274 (971)
T 2x1g_F 270 NIIIQ 274 (971)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 88763
No 270
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.73 E-value=4.2 Score=46.07 Aligned_cols=144 Identities=11% Similarity=-0.020 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhccc-hhhHHH
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-----WREGLQSEAAKAIANLSVN-AKVAKA 464 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~ls~~-~~~~~~ 464 (617)
.+...++.++++++.++....+.. ..-.-...++.|+.++.. ....++..++++++..+.- ..+.+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~-------e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~ 537 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDT-------EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH-------HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchh-------HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 467888999999998864332210 112223456677777753 2233455677888876651 111112
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh------cCChHHHHHHHhh-cCCCCHHHHHHHHHHH
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD------AGGVKALVDLIFK-WSSGGDGVLERAAGAL 537 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~------~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L 537 (617)
+ ...+..|++.|.+.++.++..|++++.+|+.. .+..+.. .-.++.++..+.. ...-+..-...+..++
T Consensus 538 L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 538 L--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 22355566666667889999999999999974 3344432 1134444443322 1234556667777777
Q ss_pred HHhccCCC
Q 007131 538 ANLAADDK 545 (617)
Q Consensus 538 ~~l~~~~~ 545 (617)
+.+...-+
T Consensus 614 ~~vi~~~~ 621 (1023)
T 4hat_C 614 GIIISEER 621 (1023)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 77775443
No 271
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.31 E-value=6.2 Score=44.57 Aligned_cols=185 Identities=8% Similarity=-0.012 Sum_probs=105.5
Q ss_pred HhhccC---CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh--
Q 007131 386 SLMQST---QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK-- 460 (617)
Q Consensus 386 ~~l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~-- 460 (617)
..+.+. ++-+|..|++++..++..- . + . .-...++.++..|.++++.++..|+.+|.+++...+
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~----~----~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQL--T----K----A-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGS--C----H----H-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhC--C----H----H-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 334555 8899999999999876431 1 1 1 123356788888888889999999999999887321
Q ss_pred -------hHHHHHH--hCCHHHHHHHHhcCC---HH--HHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhh--c
Q 007131 461 -------VAKAVAE--EGGINILAVLARSMN---RL--VAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFK--W 522 (617)
Q Consensus 461 -------~~~~i~~--~~~i~~L~~lL~~~~---~~--~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~--~ 522 (617)
.+..+.. ...++.|+.++.... +. ..+.+..+|..++.. ++... .. ...++.|+..+.. .
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~ 608 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAK 608 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTT
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHh
Confidence 1222311 112556666776641 11 224445555544321 11111 11 1133445555543 1
Q ss_pred CCCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 523 SSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...+..+...++.++..++.. ++....-.....++.+...+.... .+....+..++..+..
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 609 NPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVE 670 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHH
Confidence 234556777788888888765 222222334456777888777543 4566666666666654
No 272
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.28 E-value=0.27 Score=49.97 Aligned_cols=162 Identities=14% Similarity=-0.021 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHH
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN 472 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~ 472 (617)
..+|+.|+.+|..+ ..-+.. ...+..++..+.....+++--++-.|..+ .+.-..+ .+.++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~L--d~Vv~ 302 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVEDK--DGLCR 302 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCCH--HHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHHH--HHHHH
Confidence 56788888888887 332221 22344444445667899999999999988 1111111 33467
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 007131 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (617)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 552 (617)
.++..|.+.+++|+..|+.+|..++ .++.-. ..+..+.+.|.+ -++-..-...++..|+.|+..+... ...
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~-LDDLSASTgSVMdLLAkL~s~p~~a--~~d 373 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIES-EELISVSKTSNLSLLTKIYRENPEL--SIP 373 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHT-CCSCCTTHHHHHHHHHHHHHHCTTC--CCC
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhh-hcccchhhHHHHHHHHHHHcCCccc--ccC
Confidence 8888888999999999999999999 222111 123445555554 2222234556667777776544320 011
Q ss_pred hCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 553 AGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 553 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
...+|.|..++++.- ..|+..+..+|..+.
T Consensus 374 p~LVPRL~PFLRHtI-TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPV-PEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSS-HHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Confidence 245677778888875 788888888887664
No 273
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.83 E-value=8.6 Score=43.35 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=84.7
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH---hcCCHHHHHHHHHHHHHhccc-hhhHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA---KSWREGLQSEAAKAIANLSVN-AKVAKA 464 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 464 (617)
.+.+...++.++.++..++....... ...++.++..+ .++++.++..+++++..++.. .++...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~ 526 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM 526 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 34566778888889998875533321 12334455444 234688999999999998863 222222
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHH----HHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKAL----VDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L----~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+ ...++.++..|.+ +.++..|+.++.+++.. .+..+. ..++.+ ..++.. ...+...+..+..+++.+
T Consensus 527 l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~--p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 527 I--NSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLP--PYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp H--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCT--TTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHH--hhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHH
Confidence 2 4567888888854 78999999999999843 222222 234444 444442 233567888888888888
Q ss_pred ccC
Q 007131 541 AAD 543 (617)
Q Consensus 541 ~~~ 543 (617)
+..
T Consensus 598 ~~~ 600 (963)
T 2x19_B 598 LSA 600 (963)
T ss_dssp HTT
T ss_pred Hhc
Confidence 753
No 274
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.39 E-value=6 Score=39.03 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=80.9
Q ss_pred HHHHhCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHH
Q 007131 464 AVAEEGGINILAVLARS-----------MNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 464 ~i~~~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
.++ .+|+..|+++|.. .+......++.+|..+.....+...+.+ ..++..|+..| .+..+.++.
T Consensus 105 ~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L---~s~~~~~~~ 180 (383)
T 3eg5_B 105 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM---DPAVPNMMI 180 (383)
T ss_dssp HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC---CTTSHHHHH
T ss_pred HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh---CCCchHHHH
Confidence 344 6788888888863 1346677889999999887777776766 67788888888 467889999
Q ss_pred HHHHHHHHhccCCC--c-hHHHHHh----------CCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 532 RAAGALANLAADDK--C-SMEVALA----------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 532 ~a~~~L~~l~~~~~--~-~~~i~~~----------~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.|+..|..+|..++ + ...+.++ .-+..++..++++...+.+..++..+-.+..
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 99999999997654 3 4444431 2356677777664445555555555545554
No 275
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.09 E-value=4.6 Score=36.71 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=76.5
Q ss_pred hCCHHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 468 EGGINILAVLARS----M-------NRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 468 ~~~i~~L~~lL~~----~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.+|+..|+.+|.. . +......++.+|..+.....+...+.+ .+++..++..| .+.+..++..|+.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L---~s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM---DPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC---CTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh---CCCCchHHHHHHH
Confidence 5677777777653 1 235677889999999888777777766 66787787777 4678899999999
Q ss_pred HHHHhccCCC--c-hHHHHHh----------CCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 536 ALANLAADDK--C-SMEVALA----------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 536 ~L~~l~~~~~--~-~~~i~~~----------~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.|..+|..++ + ...+.++ .-+..+++.++.....+.+..++..+-.+..
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence 9999997654 5 5555432 1345566666644434555555544444554
No 276
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.38 E-value=0.27 Score=45.28 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=20.2
Q ss_pred hhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHH
Q 007131 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKA 451 (617)
Q Consensus 419 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 451 (617)
.-|......-....+..+++++++.+|..++..
T Consensus 65 ~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 65 ERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHH
Confidence 334444444344556666777788888887754
No 277
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.27 E-value=7.8 Score=43.80 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH---h--cCCHHHHHHHHHHHHHhccch-hhHHH
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA---K--SWREGLQSEAAKAIANLSVNA-KVAKA 464 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~--~~~~~~~~~a~~~L~~ls~~~-~~~~~ 464 (617)
.+...++.|+.++..++....... ...++.++.++ . +.++.++..+++++..++..- ++...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~------------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~ 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE------------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh------------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455677888888888864433221 13445555544 2 237889999999999988621 11111
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+ ...++.|+..| + +.++..|+.++.+++.. .+..+.- ...+..+..++.. +..+...+..+..++..++.
T Consensus 544 l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 544 I--PPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp H--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHH
Confidence 1 12356666667 2 67899999999999943 3333332 2344555566653 22456788888888888865
No 278
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.48 E-value=6.6 Score=44.44 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhccchhh-HHHHHHhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 440 WREGLQSEAAKAIANLSVNAKV-AKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
.+...++.++.+++.++..... .+.-.-...++.|+.++.. ....++..++++++..+..-..... .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-----~L~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----FLR 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-----HHH
Confidence 4688999999999999984321 1211113357888888864 2223344566777766542221122 244
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHhccCCCchHHHHH------hCCHHHHHHHH----hcCCchhHHHHHHHHHHHH
Q 007131 514 ALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVAL------AGGVHALVMLA----RSCKFEGVQEQAARALANL 582 (617)
Q Consensus 514 ~L~~ll~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~------~~~~~~L~~ll----~~~~~~~~~~~a~~~L~~l 582 (617)
+++..|..+ ++.+++++.+|++++.++|.. .+..+.. ...++.++..+ ..- +.+-...+..++..+
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 444444331 346688999999999999963 3444432 12344444422 222 356667777888877
Q ss_pred hcc
Q 007131 583 AAH 585 (617)
Q Consensus 583 ~~~ 585 (617)
...
T Consensus 617 i~~ 619 (1023)
T 4hat_C 617 ISE 619 (1023)
T ss_dssp HTT
T ss_pred HHh
Confidence 763
No 279
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.68 E-value=15 Score=33.02 Aligned_cols=133 Identities=17% Similarity=0.069 Sum_probs=86.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcc--ch
Q 007131 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLSV--NA 459 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls~--~~ 459 (617)
....+.+++..++|..|+..|..+ . .. ...++.+.. +-.+++-.+++.++.++..++. ++
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~-~~---------------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p 137 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-S-KD---------------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY 137 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-T-TS---------------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-c-Cc---------------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 334444677788999999988765 2 11 113344444 3345678999999999987764 33
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~ 538 (617)
+ ..++.+...+++++..++..|...+.--+..+. ...-...++.++.. ..+.+.-|+..+++.|.
T Consensus 138 e--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~------~k~dp~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 138 K--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY------FKENPNEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp T--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT------TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch------hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 146778888999999999999888754232111 01222333444432 25677889999999999
Q ss_pred HhccCCCc
Q 007131 539 NLAADDKC 546 (617)
Q Consensus 539 ~l~~~~~~ 546 (617)
.++..++.
T Consensus 204 D~SK~~Pd 211 (240)
T 3l9t_A 204 DISKKFPD 211 (240)
T ss_dssp HHHTTCHH
T ss_pred HHhhhCHH
Confidence 99976544
No 280
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.37 E-value=12 Score=35.63 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=128.7
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-----hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK-----VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWN 495 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~-----~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~n 495 (617)
+.+...+.+..|+..|..-+-+.|..++.+..++..... ..+.+.. --+.|..++.. +++++.-.+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 467788889999999988889999999999999877332 2223322 23334444443 566677777778888
Q ss_pred hcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-CCCchHHHHHhCC---HHHHHHHHhcCCchhH
Q 007131 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGG---VHALVMLARSCKFEGV 571 (617)
Q Consensus 496 L~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~---~~~L~~ll~~~~~~~~ 571 (617)
....+.....+...+.+..+.+.+. .++-++...|..++..|-. +......+...+. +...-.++.+++ =-+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~---~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N-YVT 225 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVE---MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YVT 225 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTT---CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhc---CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc-chh
Confidence 8888888888888888888888884 5777888888888888753 3333445554443 455666777775 578
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+..+...|..|-.+.........-+.+..-+..+..+|++++..|
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~I 270 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNI 270 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhch
Confidence 888999999988754433222223334455666667777765443
No 281
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.90 E-value=0.37 Score=48.25 Aligned_cols=160 Identities=10% Similarity=0.140 Sum_probs=97.2
Q ss_pred CCCceEEEecCCCCc-cHHHHhcCCCccEEeccCCCC-CCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESA-DSIIHLQARNLRELSGDYCRK-ITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
+.+|+.+.+...... .......|..|+.+.+..... +.. .....|+.++.+.+. ...+.+. ....|.
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~---~~~i~~~----~F~~~~ 297 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYG---SVIVPEK----TFYGCS 297 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEEC---SSEECTT----TTTTCT
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCCcceeec----cccccccccceeccC---ceeeccc----cccccc
Confidence 467888888654221 112223678888888865431 221 123457888888885 2223322 234588
Q ss_pred CCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCC-CCCCHHHHHHHHhcCCCCC
Q 007131 180 KLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGT-SNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 180 ~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~ 256 (617)
+|+.+.+... ..+.+.. ...|++|+.+++... ..+.+.++.+|++|+.+.+..+ ..+.+ ..+.+|++|+
T Consensus 298 ~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~ 369 (394)
T 4fs7_A 298 SLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGA----NAFQGCINLK 369 (394)
T ss_dssp TCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTBTTCTTCC
T ss_pred cccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehH----HHhhCCCCCC
Confidence 9999988753 2244332 346899999999653 3456677889999999998653 12222 2246799999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
.+++..+-- .+...+.+|++|+.+
T Consensus 370 ~i~lp~~~~---~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKRLE---QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGGGG---GGGGGBCTTCEEEEE
T ss_pred EEEECCCCE---EhhheecCCCCCcEE
Confidence 999987421 112235567777654
No 282
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.64 E-value=7.8 Score=31.89 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=56.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-|.+.++.++..|+..|-.+..++.... +..+....++..+++++...++.++..+..++..-+.
T Consensus 45 rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f------~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 45 RSIMRRVNHKDPHVAMQALTLLGACVSNCGKIF------HLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH------HHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHH------HHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999887775432 2566777888889999987889999999988876654
No 283
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.36 E-value=18 Score=41.17 Aligned_cols=188 Identities=10% Similarity=-0.005 Sum_probs=111.4
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC---------CHHHHHHHHHH
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW---------REGLQSEAAKA 451 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~---------~~~~~~~a~~~ 451 (617)
..+..++. +.++.+|..|+..|.+........ +.+..+.. +.. .++.++.+. ++.++...+.+
T Consensus 51 ~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~--l~~~~~~~-ir~----~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ 123 (1049)
T 3m1i_C 51 QKADQILQFSTNPQSKFIALSILDKLITRKWKL--LPNDHRIG-IRN----FVVGMIISMCQDDEVFKTQKNLINKSDLT 123 (1049)
T ss_dssp GGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG--SCHHHHHH-HHH----HHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc--CCHHHHHH-HHH----HHHHHHHhhCCccccchhhHHHHHHHHHH
Confidence 45556663 567889999999999976544332 22222222 222 344444321 35678888888
Q ss_pred HHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----c----ch-----HHHHHh--cCChHHH
Q 007131 452 IANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-----E----EH-----KGAIAD--AGGVKAL 515 (617)
Q Consensus 452 L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-----~----~~-----~~~i~~--~g~i~~L 515 (617)
+..++..+--. ...+.++.|+..+. .++...+.+..+|..|+.. . .. +..+.. ...+..+
T Consensus 124 ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~ 199 (1049)
T 3m1i_C 124 LVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1049)
T ss_dssp HHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887642210 12445788888886 5666677777777776631 0 01 122322 1123334
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 516 VDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 516 ~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..++.. ..+..++..++.++.+....-+. ..+.+...++.+.+.+.. +++++..|+.+|..+...
T Consensus 200 ~~~l~~--~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 200 FQVLEQ--GSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHH--CCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 445543 34678899999999887654442 224445666666643322 378899999999998864
No 284
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=74.55 E-value=15 Score=36.25 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=76.1
Q ss_pred hCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 468 EGGINILAVLARS-----------MNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 468 ~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.+|+..|+.+|.. .+......++.+|..+.....+...+.. .+++..++..| .+.+..++..++.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL---~s~~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM---DPAVPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC---CTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh---CCCCchHHHHHHH
Confidence 4667777777653 1345677889999999887766666665 66788888877 4577889999999
Q ss_pred HHHHhccCCC--c-hHHHHH----------hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 536 ALANLAADDK--C-SMEVAL----------AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 536 ~L~~l~~~~~--~-~~~i~~----------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.|..+|..++ + ...+.+ ..-+..+++.+..+...+.+..++..+-.|..
T Consensus 123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 184 (386)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence 9999997654 4 444433 12355677777654445555555555544554
No 285
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=73.51 E-value=56 Score=32.80 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 439 SWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
++++..+..|+..+..... .++..+. ++..++.++.+.+..++..|...|..+|.+ ++...+ ...|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHH
Confidence 4578899999999988777 4554443 467899999999999999999999999987 543333 456788
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHh
Q 007131 518 LIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+|. ++++.-...+-.+|..+
T Consensus 108 lLq---tdd~~E~~~V~~sL~sl 127 (507)
T 3u0r_A 108 LLQ---TDDSAEFNLVNNALLSI 127 (507)
T ss_dssp HTT---CCCHHHHHHHHHHHHHH
T ss_pred HHh---ccchHHHHHHHHHHHHH
Confidence 885 34433333333343333
No 286
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=72.63 E-value=38 Score=38.39 Aligned_cols=191 Identities=8% Similarity=-0.029 Sum_probs=112.8
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-----WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l 455 (617)
.....++. +.++.+|..|+..|.+......... .+.. +.-+....+..+...-.. .++.++...+.++..+
T Consensus 63 ~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L--~~e~-~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I 139 (1073)
T 3gjx_A 63 TRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL--PRNQ-CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQI 139 (1073)
T ss_dssp HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS--CHHH-HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC--CHHH-HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHH
Confidence 55556663 4688999999999998765543322 1222 222333333433333222 2466777788888877
Q ss_pred ccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---c-----------chHHHHHhcCChHHHHHHHhh
Q 007131 456 SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG---E-----------EHKGAIADAGGVKALVDLIFK 521 (617)
Q Consensus 456 s~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~-----------~~~~~i~~~g~i~~L~~ll~~ 521 (617)
+..+--. ...+.++.++..+.. ++...+..+.+|..|+.. . ..+..+.+ -++.++.++..
T Consensus 140 ~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~ 213 (1073)
T 3gjx_A 140 LKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQF 213 (1073)
T ss_dssp HHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 7632110 124446777777754 445566677777766532 1 11233333 25555554432
Q ss_pred --cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH-HHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 522 --WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV-MLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 522 --~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
....++.+...++.++......-+- ..+++.+.++.++ .++. .++++..|+.+|..+...
T Consensus 214 iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 214 VMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHS
T ss_pred HhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhc
Confidence 1346778888999999999876543 3466667777664 4443 378999999999998863
No 287
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=72.39 E-value=0.97 Score=44.82 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=75.2
Q ss_pred cCCCccEEeccCCC-CCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCcc-CCcHHHHHHH
Q 007131 123 QARNLRELSGDYCR-KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIR-DICGDAINAL 200 (617)
Q Consensus 123 ~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~i~~~~l~~l 200 (617)
.+.+|+.+.+...- .+.+. ....|..|+.+.+.. ....+.+. ....|.+|+.+.+.... .+... .
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~-~v~~I~~~----aF~~~~~l~~i~l~~~i~~i~~~----a 281 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPK-NVTSIGSF----LLQNCTALKTLNFYAKVKTVPYL----L 281 (379)
T ss_dssp TCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECT-TCCEECTT----TTTTCTTCCEEEECCCCSEECTT----T
T ss_pred cccccceeeeccceeEEccc----cccCCccceEEEcCC-CccEeCcc----ccceeehhccccccccceecccc----c
Confidence 56778887775432 12221 223578889888852 22223222 12347888888886431 22222 2
Q ss_pred HhcCCCCceEeecCC--CCCCHHHHhcCcCCCeecccCC-CCCCHHHHHHHHhcCCCCCeEEeccC
Q 007131 201 AKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGT-SNMKWGVVSQVWHKLPKLVGLDVSRT 263 (617)
Q Consensus 201 ~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (617)
...|++|+.+.+.++ ..+.+..+.+|.+|+.+.+... ..|.+ ..+.+|.+|+.+.+..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQV----YAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHH----HHhhCCCCCCEEEECCc
Confidence 346889999998764 3456677888999999988542 22322 22457889999888663
No 288
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.50 E-value=14 Score=31.20 Aligned_cols=70 Identities=11% Similarity=-0.034 Sum_probs=55.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-|++.++.++..|+..|-.+..++... .+..+....++..|++++.. .++.++..+..++..-+.
T Consensus 55 ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 55 KAIMKRVNHKVPHVALQALTLLGACVANCGKI------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 67777788899999999999999988777543 23567778888999998876 478899988888766543
No 289
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=69.30 E-value=28 Score=39.15 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHH
Q 007131 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHAL 559 (617)
Q Consensus 480 ~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L 559 (617)
..+...++.|+.++..++..... .....++.++..+..-.++++.++..+++++..++..-........ ..++.+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l 534 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV 534 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 35667889999999999865321 0123455666655432335778999999999999853111123332 567777
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 560 VMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 560 ~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+..+.+ +.++..|+.++.+++..
T Consensus 535 ~~~l~~---~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 535 LHALGN---PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHTTC---GGGHHHHHHHHHHHHHH
T ss_pred HHHhCC---chHHHHHHHHHHHHHHH
Confidence 777753 68999999999999963
No 290
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.25 E-value=9.2 Score=31.43 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=52.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|.+.++.++..|+.+|-.+..+ ......+.....+..|+.++...++.|++.+...+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 455666777788899999999998888874 445556655556777888887788899988888877665
No 291
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.24 E-value=1.2 Score=44.09 Aligned_cols=124 Identities=11% Similarity=0.154 Sum_probs=81.4
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecCC-CCCCHHHHhc
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGN 225 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~ 225 (617)
..+.+|+.+.+.. ....+.+.. ...|.+|+.+.+... ..+.+. ....|.+|+.+.+... ..+....+..
T Consensus 214 ~~~~~l~~i~~~~-~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~i~~i~~~aF~~ 284 (379)
T 4h09_A 214 SYGKNLKKITITS-GVTTLGDGA----FYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAKVKTVPYLLCSG 284 (379)
T ss_dssp TTCSSCSEEECCT-TCCEECTTT----TTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCCCSEECTTTTTT
T ss_pred ccccccceeeecc-ceeEEcccc----ccCCccceEEEcCCCccEeCcc----ccceeehhccccccccceecccccccc
Confidence 3577899998852 222232221 235889999998754 123332 2346889999999653 2344567789
Q ss_pred CcCCCeecccCC--CCCCHHHHHHHHhcCCCCCeEEeccC--CCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 226 VLSVRFLSVAGT--SNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 226 ~~~L~~L~l~~~--~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
|++|+.+.+..+ ..+.+ ..+.+|.+|+.+.+..+ .++..+ +.+|.+|+.+.+...
T Consensus 285 c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehh----hhhcCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECCc
Confidence 999999999764 22332 23467999999999763 234433 467999999988643
No 292
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.31 E-value=23 Score=29.35 Aligned_cols=70 Identities=21% Similarity=0.106 Sum_probs=56.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l 455 (617)
..+.+-+.+.++.++..|+..|-.+..++... .+..+....++..|++++.. .++.++..+..++..-
T Consensus 51 ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 51 RLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 67778888999999999999999988877653 23677788899999999963 4688999998888776
Q ss_pred cc
Q 007131 456 SV 457 (617)
Q Consensus 456 s~ 457 (617)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 293
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=65.40 E-value=93 Score=35.31 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=101.2
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQS----TQEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~~----~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
..+.+++.+ .++.++..|+.++..|+.. +..+..-.+..... ....+.+.+...+.+-+..++.+|+|+.
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~-----i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP-----LHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 455556643 4566777788777777642 11110000010111 1223344455667777888899999986
Q ss_pred cchhhHHHHHHhCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 457 VNAKVAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
.. ..++.|..++.. ....++..|+.||.+++.... . .+-+.+..+..+ .....++
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--~-----~v~~il~~i~~n-~~e~~Ev 530 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--R-----KVQEIVLPIFLN-VAIKSEL 530 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--H-----HHHHHHHHHHHC-TTSCHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--H-----HHHHHHHHHhcC-CCCChHH
Confidence 53 235555565531 245788899999999985321 0 122346677765 5678888
Q ss_pred HHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 530 LERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
+..|+.+|..-. + . ...+..+...+....+..|...+...|.+++...
T Consensus 531 RiaA~~~Lm~t~--P-~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFFESK--P-S------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHTC--C-C------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHC--c-C------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 888887775422 1 1 1234456666665555778888888888887643
No 294
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.86 E-value=21 Score=30.48 Aligned_cols=70 Identities=19% Similarity=0.084 Sum_probs=56.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l 455 (617)
..+.+-+++.++.++..|+..|-.+..++... .+..+....++..|++++.. .+..++..++.++..-
T Consensus 53 ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 53 RLLAHKIQSPQEWEALQALTVLEACMKNCGRR------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 67778888999999999999999998777543 23577888899999999863 3578999998888776
Q ss_pred cc
Q 007131 456 SV 457 (617)
Q Consensus 456 s~ 457 (617)
+.
T Consensus 127 ~~ 128 (171)
T 1juq_A 127 TM 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 295
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=62.32 E-value=1e+02 Score=28.83 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=91.2
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH--hcCCHHHHHHHHHHHH
Q 007131 382 GLLLSLMQST------QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--KSWREGLQSEAAKAIA 453 (617)
Q Consensus 382 ~~l~~~l~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL--~~~~~~~~~~a~~~L~ 453 (617)
....++++++ +.+.-..|+..|.-++..- .+-.+|++.. ...|-.++ ....+.+++.|++++.
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi--------~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ 95 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY--------KHGYKIITHE-FALLANLSLNENLPLTLRELSTRVIT 95 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH--------HHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH--------HhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHH
Confidence 3455666655 3334577888888775321 1223555432 23333333 3346789999999999
Q ss_pred Hhcc-chhhHHHHHHh--CCHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcC
Q 007131 454 NLSV-NAKVAKAVAEE--GGINILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS 523 (617)
Q Consensus 454 ~ls~-~~~~~~~i~~~--~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~ 523 (617)
..-. +|+.-+.|.+. .-+..++.-|.. ....+.+.-+++|..|..++. .+ ...++..|.+++.. .
T Consensus 96 ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~-~ 170 (315)
T 3qml_C 96 SCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYER-N 170 (315)
T ss_dssp HHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHH-T
T ss_pred HHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHcc-C
Confidence 8877 55555555543 225555544443 344677888999999998762 12 24588889998865 2
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 007131 524 SGGDGVLERAAGALANLA 541 (617)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~ 541 (617)
..++.++..++..+..+=
T Consensus 171 ~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 171 NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 338889998888887765
No 296
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.16 E-value=17 Score=30.69 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=52.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|.+.++.++..|+.+|-.+..+ ...+..|...+.++.|+.++.. .++.|++.+...+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445677778888999999999999988884 5566667666667788888875 66788888887776554
No 297
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=61.78 E-value=27 Score=35.02 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhH
Q 007131 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA 462 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~ 462 (617)
.++... .+++..++-|+..|......-++ ....++.+++.+..+.+..+|..|.+.|..++.+ +.-
T Consensus 33 ~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~------------l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i 98 (507)
T 3u0r_A 33 VILDGV-KGGTKEKRLAAQFIPKFFKHFPE------------LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL 98 (507)
T ss_dssp HHHHGG-GSCHHHHHHHHHHHHHHGGGCGG------------GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHhhChh------------hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh
Confidence 334433 34678888888888876433222 2334678999999999999999999999999988 544
Q ss_pred HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 463 KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 463 ~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
..+ ++.|+++|..+++.-....-.+|..|
T Consensus 99 ~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sl 127 (507)
T 3u0r_A 99 PRV-----ADILTQLLQTDDSAEFNLVNNALLSI 127 (507)
T ss_dssp HHH-----HHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhH-----HHHHHHHHhccchHHHHHHHHHHHHH
Confidence 444 46688999887764444433343333
No 298
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.37 E-value=18 Score=29.96 Aligned_cols=70 Identities=20% Similarity=0.073 Sum_probs=56.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l 455 (617)
..+.+-+++.++.++..|+..|-.+..++... .+..+....++..|++++.. .++.++..++.++..-
T Consensus 41 rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 41 WLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 67777788999999999999999998887643 23677788899999998864 3678999988888766
Q ss_pred cc
Q 007131 456 SV 457 (617)
Q Consensus 456 s~ 457 (617)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 299
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.80 E-value=24 Score=31.73 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=55.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-|.+.++.++..|+..|-.+..+.... .+..+....++..|+++++.. ++.++..++.++..-+.
T Consensus 48 ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 48 NSIKKKVNDKNPHVALYALEVMESVVKNCGQT------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999988776543 235677788888888888764 78899999888877654
No 300
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=59.14 E-value=50 Score=29.68 Aligned_cols=131 Identities=12% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcC--CcchHHHHHh
Q 007131 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSV--GEEHKGAIAD 508 (617)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~--~~~~~~~i~~ 508 (617)
..-.+.+++..++|..|+.+|..+ . .... .++.+.. +-...+-.|++.++.++..++. +++
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~--~~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------- 138 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-S--KDKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------- 138 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-T--TSHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-c--CcHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------
Confidence 334445566789999999988877 2 1111 1233333 2334677899999999988874 333
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..++.+..... +++..+++.|...+.--+.....+ .+..-+-.+++-+..+++.-|+...++.|..++.+
T Consensus 139 -~~l~~~~~W~~---d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLK---SSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHH---CSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhc---CCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 25666677774 588899999988775433221110 00011222333333444588999999999999974
No 301
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.81 E-value=17 Score=30.13 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=54.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhhHHHHHHhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhcC
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~~ 498 (617)
++..|.+-+.+.++.++..|+.+|-.+.. .......|.....+..|++++.. .++.|++.++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45577777788899999999999998887 45566777766678889999863 567899888888876653
No 302
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=57.68 E-value=53 Score=37.31 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhccch--hhHHHHHHhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCCh
Q 007131 440 WREGLQSEAAKAIANLSVNA--KVAKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i 512 (617)
.+...++.|+.+++.++..- +....+ -...++.++.+... +.+-++..+++++...+..-........ ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 46788999999999998631 111111 01123444443221 1223333577777776633211122222 355
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccC
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
+.++..| .+.++.++..|+.++.+++..
T Consensus 543 ~~ll~~l---~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 543 LKLFEFM---HETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHT---TSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 5666666 446789999999999999973
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=57.51 E-value=4.4 Score=32.89 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+|++|+|++|.++.-. ...+..+++|+.|+|.+|+..=+..+.
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCeeccCccH
Confidence 5777777777654322 233556888889999988876555433
No 304
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=54.69 E-value=15 Score=30.49 Aligned_cols=69 Identities=17% Similarity=0.012 Sum_probs=53.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|++.++.++..|+.+|-.+..+ ......+...+.+..|++++.. .++.|++.++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345666677788999999999999998884 5667777766677888888763 46789988888876665
No 305
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.12 E-value=21 Score=32.02 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=53.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~ 497 (617)
++.+|.+-|.+.++.++..|+.+|-.+..+ ......|.....++.|..+++. .++.|++.++..+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 456777888888999999999999998883 4456666666667778788765 56788888888877665
No 306
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.23 E-value=39 Score=30.09 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=53.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls 456 (617)
..+.+-|.+.++.++..|+..|-.+..++... .+..+.+...+..|++++.+. +++++..+..++..-+
T Consensus 45 r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 45 AAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 67777788899999999999999988776542 235677777888888888754 6788888887776554
No 307
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.58 E-value=27 Score=29.72 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=54.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|.+.++.++..|+.+|-.+..+ ...+..|...+.+..|+.++.. .++.|++.++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 446777778888999999999999999885 5566677777678889998863 35788988888886665
No 308
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=48.54 E-value=1.9e+02 Score=32.75 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=81.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-------CCHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-------WREGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~ 454 (617)
..+.+.+...+.+.+..++.+|.|+.. ...++.|.+++.. ....++..|+.+|+.
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~------------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~ 504 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQ------------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN 504 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC------------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCC------------------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHH
Confidence 445555566677778888899998731 1245666666642 135688889999999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLAR--SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++...+ ..+ -+.+..+.. ..+++++..|+.+|..-.-.. ..+..+...+. .+.+.+|...
T Consensus 505 ~~~~~p--~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~---------~~l~~ia~~l~--~E~~~QV~sf 566 (1056)
T 1lsh_A 505 IAKRDP--RKV-----QEIVLPIFLNVAIKSELRIRSCIVFFESKPSV---------ALVSMVAVRLR--REPNLQVASF 566 (1056)
T ss_dssp GGGTCH--HHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH---------HHHHHHHHHHT--TCSCHHHHHH
T ss_pred hhhhch--HHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHHCcCH---------HHHHHHHHHHh--hCchHHHHHH
Confidence 986432 111 233666663 477889988887775432111 23445566665 4567788888
Q ss_pred HHHHHHHhccCC
Q 007131 533 AAGALANLAADD 544 (617)
Q Consensus 533 a~~~L~~l~~~~ 544 (617)
+...|.+++...
T Consensus 567 v~S~l~sla~s~ 578 (1056)
T 1lsh_A 567 VYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcC
Confidence 888888888654
No 309
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=47.33 E-value=12 Score=30.20 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=18.8
Q ss_pred CCceEeecCCC--CCCHHHHhcCcCCCeecccCCCCC
Q 007131 206 NLTDIGFLDCL--NVDEVALGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 206 ~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~i 240 (617)
+|++|+|++|. .+....+..+++|++|+|++|+-.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 56666666652 122234555666666666665433
No 310
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.27 E-value=17 Score=33.40 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhc--------CCHHHHHHHHHHHHHhcCCc-chHHHHHh
Q 007131 439 SWREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARS--------MNRLVAEEAAGGLWNLSVGE-EHKGAIAD 508 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~--------~~~~~~~~a~~~L~nL~~~~-~~~~~i~~ 508 (617)
+.++..+..++++++|+..++. ++..+........++..+.. .+..++.+++..+.|+|..- ..+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467889999999999999998 67766543223334443311 24567888899999998532 1111 1
Q ss_pred cCChHHHHHHHhh--c-C---CCCHHHHHHHHHHHHHhccCCCc
Q 007131 509 AGGVKALVDLIFK--W-S---SGGDGVLERAAGALANLAADDKC 546 (617)
Q Consensus 509 ~g~i~~L~~ll~~--~-~---~~~~~~~~~a~~~L~~l~~~~~~ 546 (617)
......+++.+.. + . ..+++....++-++++|...++.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 2344556666642 0 0 13678889999999999865443
No 311
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=41.85 E-value=88 Score=35.45 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHHhhcCCCCHH--HHHHHHHHHHHhccCCCchHHHHHhCCHHH
Q 007131 482 NRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFKWSSGGDG--VLERAAGALANLAADDKCSMEVALAGGVHA 558 (617)
Q Consensus 482 ~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~ 558 (617)
+....+.++++++.+|..-. ....-.=...++.|+.+.......+.+ +....+++++..+..=.....+.+ ..+..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~ 570 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNK 570 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHH
Confidence 46889999999999985322 112111123566677766531111222 333345677666643222233333 24455
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 559 LVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 559 L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
|++.+... ++++++.|+.++..+|...
T Consensus 571 L~~~m~~~-~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 571 LFEFMHET-HDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHTTCC-STTHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 55665555 4899999999999999743
No 312
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=41.33 E-value=2.3e+02 Score=26.55 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=92.0
Q ss_pred HHHHHHhcC------CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCc-ch
Q 007131 432 LLLDLAKSW------REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVGE-EH 502 (617)
Q Consensus 432 ~Lv~lL~~~------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~nL~~~~-~~ 502 (617)
.+..+++++ +.+....|...|-.+|-+-+.-..|.... .+.|-.++ ...++.+++.|+.++..--.+. +.
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~A 104 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPV 104 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHH
Confidence 445556655 34456778888888888777767776532 34444443 3356678888888887766544 44
Q ss_pred HHHHHh--cCChHHHHHHHhh----cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcC-CchhHHHHH
Q 007131 503 KGAIAD--AGGVKALVDLIFK----WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-KFEGVQEQA 575 (617)
Q Consensus 503 ~~~i~~--~g~i~~L~~ll~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~-~~~~~~~~a 575 (617)
-..+.+ ...+..+..-|.. .......++..-+++|..|..++.. + ...++..|.+++... .+..++..|
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kv 180 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKV 180 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHH
Confidence 444443 4455555544432 1123457888899999999987632 2 245678888877654 137888888
Q ss_pred HHHHHHHh
Q 007131 576 ARALANLA 583 (617)
Q Consensus 576 ~~~L~~l~ 583 (617)
+..+..+=
T Consensus 181 l~li~d~f 188 (315)
T 3qml_C 181 LELISKIL 188 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887765
No 313
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=40.85 E-value=2.9 Score=36.09 Aligned_cols=41 Identities=17% Similarity=-0.053 Sum_probs=33.2
Q ss_pred EEccCCCCCChhHHHHHHhhcCceehhhhhcHHHHHHH---HhccC
Q 007131 283 LCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALAS---LFAET 325 (617)
Q Consensus 283 L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~---~~~~~ 325 (617)
-.-..|++..+.|.+|+...+|.+| ...+|..|+.. .||.+
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf--er~~I~~~l~~~~~tcP~t 147 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY--DRKDIEEHLQRVGHFDPVT 147 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE--EHHHHHHHHHHTCSBCTTT
T ss_pred cHhhcccCccccCCCCeECCCCCEE--CHHHHHHHHHhCCCCCCCC
Confidence 3445699999999999999999999 88889999876 35554
No 314
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=40.78 E-value=1.9e+02 Score=32.44 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred hHHHHhcChHHHHHhhccC---CHHHHHHHHHHHhhhcccCCCcccCCch----hHHHHHhhCCHHHHHHHHhc-----C
Q 007131 373 DDFWLKQGAGLLLSLMQST---QEDVQERAATGLATFVVINDENASIDCG----RAEAVMKDGGIRLLLDLAKS-----W 440 (617)
Q Consensus 373 ~~~~~~~~i~~l~~~l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~----~~~~i~~~~~i~~Lv~lL~~-----~ 440 (617)
+..| .....++... ++.++..|+.+|.+... .+.+. .+..+. ..++.++.. .
T Consensus 39 p~aw-----~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~------~l~~e~~~~~~~~lr-----~~ll~~l~~~~~~~~ 102 (980)
T 3ibv_A 39 STGW-----KICHEIFSEKTKYKPSTRLICLQTLSEKVR------EWNNESNLLELQMIR-----DSVWSYIKELSFLDE 102 (980)
T ss_dssp TTHH-----HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH------HCCTTTSHHHHHHHH-----HHHHHHHHHCCSTTS
T ss_pred hhHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH------hCChhhhHHHHHHHH-----HHHHHHHHHhcCCCC
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcch----------------H
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEEH----------------K 503 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~----------------~ 503 (617)
.+-++...+.++..++...-.. ...+.++.++.++..++. ......+.+|..+...-.. +
T Consensus 103 ~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk 179 (980)
T 3ibv_A 103 PAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK 179 (980)
T ss_dssp CTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Q ss_pred HHHHhc-------CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 504 GAIADA-------GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 504 ~~i~~~-------g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
..+.+. +.+..|.... .+.++.++..++.|+......-+....+- .+.++.+.+++.. ++++..|+
T Consensus 180 d~m~~~~~~~i~~~~~~iL~~~~---~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~---~~~r~~A~ 252 (980)
T 3ibv_A 180 DAIRANDMSDIVSFVYEMMLAYS---NAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI---EELRCAAC 252 (980)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS---HHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC---hHHHHHHH
Q ss_pred HHHHHHhccC
Q 007131 577 RALANLAAHG 586 (617)
Q Consensus 577 ~~L~~l~~~~ 586 (617)
.+|..+...+
T Consensus 253 ecL~ei~~k~ 262 (980)
T 3ibv_A 253 ETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHcC
No 315
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.47 E-value=40 Score=30.03 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|.+.++.++..|+.+|-.+..+ ...+..|.....+..|+.++.. .+++|++.++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445677777888999999999999988884 4455666665567778887765 45778887777665554
No 316
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=39.07 E-value=2.2 Score=31.69 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.2
Q ss_pred cCCCCCChhHHHHHHhhcCceehhhhhcHHHHHHH
Q 007131 286 LNCPVLEEENNISAVKSKGKLLLALFTDIFKALAS 320 (617)
Q Consensus 286 ~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 320 (617)
..|++..+.+.+|+...+|.+| ....|.+|+..
T Consensus 15 ~~CpI~~~~m~dPV~~~cGhtf--~r~~I~~~l~~ 47 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVRLPSGTVM--DRSIILRHLLN 47 (85)
T ss_dssp TBCTTTCSBCSSEEECTTSCEE--EHHHHHHHHHH
T ss_pred eECcccCchhcCCeECCCCCEE--CHHHHHHHHhc
Confidence 3588888899999988899999 88888999875
No 317
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=39.01 E-value=3.1e+02 Score=27.51 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=90.3
Q ss_pred HHHHHHHH-hc-C----CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH
Q 007131 430 IRLLLDLA-KS-W----REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 430 i~~Lv~lL-~~-~----~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
++.+-++| .+ . |++....-...+...+..++ +.+.=.++-++..|.++++.+...|+.++. .+..+
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd~----VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk 146 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFDD----VLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPK 146 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHHH----HHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSG
T ss_pred HHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHHH----HHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCch
Confidence 45677777 33 1 45554444444444433333 444447889999999999999999999988 45667
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+...+.+..|++++.+...+..++.-+.=.++..|+.+.=.|..+.+ ...+.+..+=... +..+...-...+.-+.
T Consensus 147 ~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~-nnl~lL~~vK~~~-~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 147 GLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFD-NNLPYLVSVKGRM-ETVSFVRLIDFLTIEF 224 (500)
T ss_dssp GGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred hHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH-HhHHHHHHHhcCC-CceeHHHHHHHHHHHh
Confidence 7788889999999999872233333777666777777654434666665 4455555443333 3444444444444444
Q ss_pred c
Q 007131 584 A 584 (617)
Q Consensus 584 ~ 584 (617)
.
T Consensus 225 ~ 225 (500)
T 3vld_A 225 Q 225 (500)
T ss_dssp T
T ss_pred c
Confidence 3
No 318
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=37.33 E-value=77 Score=36.60 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=102.9
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhccchhh
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-------WREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
.+.+..+|..|+..|.+........ +++..+..+ . ..++.++.. ..+.++...+.++..++..+--
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~--l~~e~k~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNG--MSRLEKVYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGG--SCHHHHHHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccc--CCHHHHHHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc
Confidence 4567889999999999876443322 222222222 2 344555442 3477888889999888774311
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---c----ch-----HHHHHhcCChHHHH----HHHhhc---
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG---E----EH-----KGAIADAGGVKALV----DLIFKW--- 522 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~----~~-----~~~i~~~g~i~~L~----~ll~~~--- 522 (617)
. ...+.++.|+.++.. ++...+.+..+|..|+.+ . .. +..+.+. ++.++ .++...
T Consensus 130 ~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~ 203 (1204)
T 3a6p_A 130 Q---HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNK 203 (1204)
T ss_dssp T---TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHH
T ss_pred c---cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 0 124557888888865 556677788888877532 1 11 1122221 34433 334320
Q ss_pred -------------CCCCHHHHHHHHHHHHHhccCCCchHHHHHhC--CHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 523 -------------SSGGDGVLERAAGALANLAADDKCSMEVALAG--GVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 523 -------------~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~--~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
...+..+...++.++.+....-+.. .+.+.. .++.+..++. +++++..|+.+|..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~-~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 204 YQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS-HITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTC
T ss_pred HhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH-HHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhC
Confidence 0122346677777777665543322 223322 4555555444 268899999999999863
No 319
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.68 E-value=1.1e+02 Score=25.50 Aligned_cols=70 Identities=11% Similarity=-0.090 Sum_probs=52.6
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHH-HHHHHhc---CCHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRL-LLDLAKS---WREGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~-Lv~lL~~---~~~~~~~~a~~~L~~ls 456 (617)
..+.+-++ +.++.++..|+..|-.+..++... .+..+.+...+.. |++++.. ....++..+...+..-+
T Consensus 56 ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 56 RAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 67777776 478999999999999988877643 2356778888887 7888853 24578888888877655
Q ss_pred c
Q 007131 457 V 457 (617)
Q Consensus 457 ~ 457 (617)
.
T Consensus 130 ~ 130 (157)
T 1elk_A 130 D 130 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 320
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.53 E-value=2.3 Score=32.77 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=27.8
Q ss_pred cCCCCCChhHHHHHHhhcCceehhhhhcHHHHHHH
Q 007131 286 LNCPVLEEENNISAVKSKGKLLLALFTDIFKALAS 320 (617)
Q Consensus 286 ~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 320 (617)
..|++..+.+.+|+...+|.+| ....|.+|+..
T Consensus 30 ~~CpI~~~~m~dPV~~~cGhtf--~r~~I~~~l~~ 62 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLPSGTIM--DRSIILRHLLN 62 (100)
T ss_dssp TBCTTTCSBCSSEEEETTTEEE--EHHHHHHHTTS
T ss_pred hCCcCccCcccCCeECCCCCEE--chHHHHHHHHc
Confidence 4588999999999988899999 88888888853
No 321
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=33.35 E-value=65 Score=28.02 Aligned_cols=112 Identities=10% Similarity=-0.061 Sum_probs=63.2
Q ss_pred CHHHHHHHHhc------CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc---CCHHHHHHHHHHHHHhcCC
Q 007131 429 GIRLLLDLAKS------WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 429 ~i~~Lv~lL~~------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~nL~~~ 499 (617)
.+|-++.++.+ .+.......+.+...|..++...-...-..-+|.++.++-. ....+++.|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 45666655542 25566666777777777765521111111135777777644 2337999999999999853
Q ss_pred cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 500 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
......-.....+..+.+.+.+ +..+.....-|+..|..+-
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~d-p~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMD-PNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHC
T ss_pred hCccCchHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHhH
Confidence 2211111122244556666654 4556666666666666653
No 322
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.16 E-value=2.9e+02 Score=25.08 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHhhcc---CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 007131 382 GLLLSLMQS---TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (617)
Q Consensus 382 ~~l~~~l~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~ 458 (617)
..++++++. ...+.+...+.-+..|+...+.. .-...++.++.+..+.+.++|...+..+......
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-----------ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~ 83 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE-----------LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV 83 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-----------GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 345555532 22356666666666665443221 1133455666655566888999999888777642
Q ss_pred -hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 459 -AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 459 -~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
.+.. ...++.|..+|++.++.+.+.+..+..++
T Consensus 84 k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 84 KVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp CGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2222 22366777888888888888776655443
No 323
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=30.39 E-value=3.3 Score=31.68 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=27.7
Q ss_pred cCCCCCChhHHHHHHhhcC-ceehhhhhcHHHHHHH
Q 007131 286 LNCPVLEEENNISAVKSKG-KLLLALFTDIFKALAS 320 (617)
Q Consensus 286 ~~c~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~ 320 (617)
..|++..+.+.+|+...+| .+| ....|.+|+..
T Consensus 23 ~~CpI~~~~m~dPV~~~cG~htf--~r~cI~~~l~~ 56 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLPSSRVTV--DRSTIARHLLS 56 (98)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEE--EHHHHHHHTTT
T ss_pred cCCcCccccccCCeECCCCCeEE--CHHHHHHHHHh
Confidence 4589999999999988888 888 78888888864
No 324
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=29.88 E-value=2.5e+02 Score=27.33 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=61.9
Q ss_pred HHHHHhhcc---CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-
Q 007131 382 GLLLSLMQS---TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV- 457 (617)
Q Consensus 382 ~~l~~~l~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~- 457 (617)
..++++|+. ...+.+...+.-+..|+...+.. .=.++++.++.+-.+.+.++|...+..|...+.
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----------Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----------LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----------GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----------HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 455566532 11234566666666654433221 124577888888777889999999998877665
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
+.+.. ...++.|..+|.+.++.+.+.+..+..++
T Consensus 94 ~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 94 DIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp CGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22221 22367788888888888888777666554
No 325
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.70 E-value=83 Score=31.09 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHhccchhhHHHHHHhCC-HHHHHHHHhc--------CCHHHHHHHHHHHHHhcCCcc-hHHHHHh
Q 007131 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARS--------MNRLVAEEAAGGLWNLSVGEE-HKGAIAD 508 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-i~~L~~lL~~--------~~~~~~~~a~~~L~nL~~~~~-~~~~i~~ 508 (617)
+..+..+..++++++|+..++.....+..... ...+++.+.. .+..++.+++..+.|+|..-. .+. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44678899999999999998884444433211 3455554421 234678888899999985321 010 1
Q ss_pred cCChHHHHHHHhh--cC----CCCHHHHHHHHHHHHHhccCCCc
Q 007131 509 AGGVKALVDLIFK--WS----SGGDGVLERAAGALANLAADDKC 546 (617)
Q Consensus 509 ~g~i~~L~~ll~~--~~----~~~~~~~~~a~~~L~~l~~~~~~ 546 (617)
......+++.+.. +. ..+++....++-+|.+|...++.
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 2334456666641 00 24778999999999999864443
No 326
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.79 E-value=1.1e+02 Score=25.34 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=49.3
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHH-HHHHHhc---CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINI-LAVLARS---MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~-L~~lL~~---~~~~~~~~a~~~L~nL~ 497 (617)
++..|.+-|++ .++.++..|+.+|-.+..+ +..+..+...+.+.. |++++.. .+..|++.++..+..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 44566677764 6889999999999888884 556667766666776 7888742 34578888877776554
No 327
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.14 E-value=1.1e+02 Score=29.45 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHHHhccchhhHHHHHHhCC-HHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCcc-hHHHHHh
Q 007131 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLAR--------SMNRLVAEEAAGGLWNLSVGEE-HKGAIAD 508 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-i~~L~~lL~--------~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~ 508 (617)
+..+..+..++++++|+..++.....+..... ...+++.+. ..+..++.+++..+.|+|..-. .+. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44678899999999999998884444432211 233344331 1245678888899999985321 010 1
Q ss_pred cCChHHHHHHHhh--cC----CCCHHHHHHHHHHHHHhccCCC
Q 007131 509 AGGVKALVDLIFK--WS----SGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 509 ~g~i~~L~~ll~~--~~----~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
......+++.+.. +. ..+++....++-+|++|...++
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 2334456666641 00 2477899999999999986443
No 328
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.84 E-value=9.1 Score=26.13 Aligned_cols=32 Identities=3% Similarity=0.037 Sum_probs=27.7
Q ss_pred CCCCCChhHHHHHHh-hcCceehhhhhcHHHHHHH
Q 007131 287 NCPVLEEENNISAVK-SKGKLLLALFTDIFKALAS 320 (617)
Q Consensus 287 ~c~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~ 320 (617)
.|++..+.+.+|+.. .+|.+| +...|.+|+..
T Consensus 5 ~CpIs~~~m~dPV~~~~sG~~y--er~~I~~~l~~ 37 (61)
T 2bay_A 5 LCAISGKVPRRPVLSPKSRTIF--EKSLLEQYVKD 37 (61)
T ss_dssp CCTTTCSCCSSEEEETTTTEEE--EHHHHHHHHHH
T ss_pred EecCCCCCCCCCEEeCCCCcEE--cHHHHHHHHHh
Confidence 488888888889887 889999 89999999976
No 329
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.97 E-value=1.3e+02 Score=26.01 Aligned_cols=103 Identities=14% Similarity=-0.040 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH
Q 007131 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (617)
Q Consensus 481 ~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~ 560 (617)
.+.............|..++.....---...+|+++..+-...-....+++.|+..|..++..-.....-.+...+..+.
T Consensus 58 ~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 35556666666666666665322222222356676666543122233799999999999985211111112223345566
Q ss_pred HHHhc-CCchhHHHHHHHHHHHHh
Q 007131 561 MLARS-CKFEGVQEQAARALANLA 583 (617)
Q Consensus 561 ~ll~~-~~~~~~~~~a~~~L~~l~ 583 (617)
+.+.+ ..+......|...|..+-
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCChHHHHHHHHHHHHhH
Confidence 65543 334678888888888884
Done!