Query 007132
Match_columns 617
No_of_seqs 149 out of 174
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12222 PNGaseA: Peptide N-ac 100.0 6E-122 1E-126 987.9 49.3 396 52-478 1-427 (427)
2 PF09113 N-glycanase_C: Peptid 96.3 0.022 4.8E-07 54.4 9.0 102 241-374 11-140 (141)
3 PF09112 N-glycanase_N: Peptid 94.3 0.26 5.7E-06 48.8 9.2 85 100-190 43-177 (177)
4 PF02837 Glyco_hydro_2_N: Glyc 75.4 7 0.00015 36.8 6.0 46 293-364 95-140 (167)
5 PRK10150 beta-D-glucuronidase; 48.0 38 0.00082 39.3 6.4 49 290-364 89-137 (604)
6 PF02837 Glyco_hydro_2_N: Glyc 47.9 64 0.0014 30.3 7.0 70 88-177 74-144 (167)
7 PF08531 Bac_rhamnosid_N: Alph 32.2 75 0.0016 30.9 4.8 48 296-363 16-65 (172)
8 PF07172 GRP: Glycine rich pro 31.4 17 0.00037 32.8 0.2 23 1-24 1-23 (95)
9 PF09112 N-glycanase_N: Peptid 28.6 84 0.0018 31.6 4.5 50 324-375 126-176 (177)
10 PRK10340 ebgA cryptic beta-D-g 25.5 1.2E+02 0.0026 37.9 6.0 56 290-372 133-196 (1021)
11 PF12222 PNGaseA: Peptide N-ac 23.3 2.4E+02 0.0053 31.9 7.4 96 96-194 215-321 (427)
No 1
>PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc). PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage.
Probab=100.00 E-value=6.3e-122 Score=987.94 Aligned_cols=396 Identities=48% Similarity=0.844 Sum_probs=358.8
Q ss_pred EEEEeecCcCCCCCCCceEeEEeeecCccCCCCCeeeeccCCCCCCCCCccEEEEEEEEEEcceeceEEEEEEECCeEee
Q 007132 52 RYFEVTKPIRLPKTKPCSYPILSHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATCKGTQFDRIFGIWLGGVELL 131 (617)
Q Consensus 52 ~~FEV~~Pv~~P~~~~c~~~Ll~h~F~nSyg~Pp~~~~Y~PP~~c~~~~~s~VvL~l~~t~~G~QyDRla~v~l~gvev~ 131 (617)
|+|||++|+..|+. +|+++||+|+||||||+|++...|+||. | +|++|||+|+++|+|||||||++|||||+|||
T Consensus 1 E~fev~~P~~~p~~-~c~~~l~~h~F~~Syg~P~~~~~y~Pp~-c---~~~~VvL~~~~~~~G~QyDRl~~v~l~gvev~ 75 (427)
T PF12222_consen 1 EVFEVTPPVVTPKG-VCSVLLLNHSFGNSYGKPPVGTYYTPPD-C---SFSKVVLNLTVTSKGRQYDRLAGVWLGGVEVW 75 (427)
T ss_pred CceEEcCCCCCCCC-ceEEEEeeeeeccccCCCceeeecCCCC-C---cceEEEEEEEEEecceecceEEEEEECCEEEE
Confidence 78999999988885 9999999999999999999876788777 7 79999999999999999999999999999999
Q ss_pred eeccCCccCCceeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecCCCCCCCCcCCCCcccccC
Q 007132 132 RSCTAEPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGNLNDRKHDLDSLASRF 211 (617)
Q Consensus 132 RtSTaEP~~~gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~~~~~~~l~~~ 211 (617)
|||||||+++||+|+++||||+|++||+ ++|+|+|+|+|+||++|||+|+|+|||+||+.+ . .
T Consensus 76 RtSTaEP~~~gi~wt~~KDvT~Y~~L~~--~~~~~~~~l~N~v~~~ytG~f~v~lt~~fy~~~-------~--------~ 138 (427)
T PF12222_consen 76 RTSTAEPTPNGIVWTVSKDVTRYSSLFK--KPQTLIFDLGNIVDDTYTGSFNVTLTLTFYPAD-------D--------P 138 (427)
T ss_pred eecCCCCCCCcceEEEEEcHHHhHHHhc--CCceEEEEeCcEeccccccEEEEEEEEEEecCC-------C--------C
Confidence 9999999999999999999999999999 589999999999999999999999999999873 1 3
Q ss_pred CCCCCEEEeCcCC-CCCCCCeeEEEecCCCcceeeEecCCCceEEEEEEEeecCCCceeeecCCCchhhcccccCC-CCC
Q 007132 212 YSNADLILPISRN-LPMNDGLWFEIKNSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNR-TLE 289 (617)
Q Consensus 212 ~~~aD~IiPis~~-~~~~~g~~f~i~n~~d~~~~~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~~~~~~~-~~g 289 (617)
.++||+||||+++ ++.|.+.||.|++. ...+.+.||+|++||+||||||||++|||||+|+||+|...++..+ .+|
T Consensus 139 ~~~ad~i~Pis~~~s~~n~~~~f~ip~~--~~~~~~~~P~Nt~ra~lei~asg~~~eEFWYsNv~d~~~~~f~~~~~~~G 216 (427)
T PF12222_consen 139 AKPADLILPISANKSPYNSPSWFSIPSD--DAVTSLVLPRNTYRAVLEIFASGNGNEEFWYSNVPDSDVDAFNNAGELYG 216 (427)
T ss_pred CCCCceEECcccCCCCCCCcceEEecCc--cceeeEeCCCCcEEEEEEEEecCCCcccceecCCChHHhhhhcccccccC
Confidence 5679999999987 56777899999643 3456677999999999999999999999999999999988766544 499
Q ss_pred CCceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-----
Q 007132 290 NGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA----- 364 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~----- 364 (617)
|||||||+|+|||++||++|||||||||||+|+|||||++|||||+|+|+||||||||+|+|||+|+|+|+|+|+
T Consensus 217 ~gpfReV~V~iDg~lag~~~PfPvIfTGGI~P~lWrPI~~i~aFdl~~y~iDlTPfLp~L~dg~~h~~~i~V~~~~~~~~ 296 (427)
T PF12222_consen 217 NGPFREVQVYIDGQLAGVVWPFPVIFTGGINPFLWRPIVGIGAFDLPSYDIDLTPFLPLLWDGKPHTFEIRVVNAEDDGD 296 (427)
T ss_pred CCCcEEEEEEECCEEEEEECCCCeEEeCCcCcccccccCCCcccCCCceeEEeccchhcccCCCccEEEEEEEccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---------cccEEEeeEEEEEEeCCCceeeceeEEeecCCceeeeccc----ccCCce--eEEEEEEEEEEEEEEEEcC
Q 007132 365 ---------LNVWLIDANLHLWLDSRSTKTEGKVLKKNVMPLRVSLHAD----FEGLDG--TFLTNVSRSISATGQIRSS 429 (617)
Q Consensus 365 ---------~~~W~vsgnL~lwlD~~~~~ttG~l~~~~~p~~~~~~~~~----~~g~~g--~~~~~a~R~ls~~g~v~ss 429 (617)
.++|+|+||||+|+|++...++|++....++.+.....+. ..|.++ .|.+.++|++++++
T Consensus 297 g~~~~~~~v~~~W~VsgnL~lwld~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~y~~~~~r~l~~~~----- 371 (427)
T PF12222_consen 297 GSATLTNSVGSNWYVSGNLFLWLDSSSSSTTGKSPSVVSPEPSISVSSFISIFSTGFNGTLSYSVSASRSLSITS----- 371 (427)
T ss_pred ccccccCccCceEEEEEEEEEEECCCCcccCCCccceecCCcceeeeeeeeccCCCceeEEEEEEEEEEEEEEee-----
Confidence 3799999999999999999999998887777655443332 235665 49999999999988
Q ss_pred CCceEEEEEEEEEEEeeEEeccCCceeeEEEEEEEEE---------EEEeeEEEEEee
Q 007132 430 YGEITTSWIQNFSYSNSMLISKNENLQIIDQMIHFHD---------TYSQSSHKVYPL 478 (617)
Q Consensus 430 ~G~~ttt~~Q~~~f~N~~~~s~~G~~Q~v~Qt~~~~~---------~~~~~~~~syPL 478 (617)
+.+++|+|+++|+|.|.++++|..|.++|++++.. ++..+.+++|||
T Consensus 372 --~~~~~~~q~l~~sN~~~~s~~g~~Q~~~q~~~~~~~~~~~~~~~~~~~~~~~~yPl 427 (427)
T PF12222_consen 372 --SSTVSWSQNLSYSNVQQYSKFGNSQSVNQTTSGTSSSTHFGESAIYTSSLTFSYPL 427 (427)
T ss_pred --EEEEEEEeEEEEEEEEEEcccCcEEEEEEEEEeeEEEEEecccceeEEEEEEeccC
Confidence 67899999999999999999999999999998865 345688999997
No 2
>PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 1PNF_A 1PNG_A 1PGS_A 3KS7_D 3PMS_A.
Probab=96.29 E-value=0.022 Score=54.40 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=63.4
Q ss_pred cceeeEecCCCceEEEEEEEeecCC-----CceeeecCCCchhhcccccCCCCCCCceeEEEEEECCeEEEEECc-----
Q 007132 241 TQEKEFRTPKNVYRAVLEVYLSFHE-----RDEFWYANLPNEFFSMNHLNRTLENGPFREVVVSLDGEVVGAIWP----- 310 (617)
Q Consensus 241 ~~~~~v~iP~Nt~rA~lev~aSg~~-----~eEFWYsNvpd~y~~~~~~~~~~g~GpfREV~V~iDG~laGv~~P----- 310 (617)
.....+++|.++.+|.|...++||| ++|| ++ |+=.|+|||..+=.-.|
T Consensus 11 ~~~~~f~lp~~~k~~~L~~iiTGHG~~~~gc~EF---c~-------------------~~h~~~vnG~~~f~~~~~~~~C 68 (141)
T PF09113_consen 11 RLPVNFTLPANAKNARLRYIITGHGSGNNGCDEF---CP-------------------KSHHFYVNGKEVFSFAPWRDDC 68 (141)
T ss_dssp SEEEEEEE-TT-SEEEEEEEEEEEEETTEEEETT---S--------------------EEEEEEETTEEEEEEEE-BS-G
T ss_pred ceeEEEECCcccceEEEEEEEecCCCCCCCccee---cc-------------------cccEEEECCeEeeecCCCccch
Confidence 3467889999999999999999999 8898 32 67789999999811110
Q ss_pred --cceEEeC--C-c--cCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc-----Cc------ccEEEee
Q 007132 311 --FSVIYTG--G-I--SPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN-----AL------NVWLIDA 372 (617)
Q Consensus 311 --fPvIfTG--G-I--~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n-----~~------~~W~vsg 372 (617)
|+..=.+ | + +=.-|=|=. ..++.+||||..+.. .|+|.+.|.- +. .+|.+|+
T Consensus 69 a~~~~~n~~p~G~w~~~Rs~WCPG~-----~v~p~~~dl~~~~~g-----~ht~~~~i~~~~~~~g~~~~~~~~~~~vS~ 138 (141)
T PF09113_consen 69 ASNRLYNPAPSGTWLYSRSNWCPGM-----VVDPWRIDLTDAVAG-----GHTFSVDIPYAQWFEGNDPTSDPGYWLVSS 138 (141)
T ss_dssp GGGSGG-TTT-SCESS-BSS--TTE-----EE--EEEEEE-GGGT-----TSEEEEEEET----BTSB-TT--EEEEEEE
T ss_pred hhccccCccccceEecCCCCCCCCC-----CCCceEeccccccCC-----CceEEEEeccccccCCCccccccceEEEEE
Confidence 1111111 1 1 112233311 345799999987763 6899999973 32 7899998
Q ss_pred EE
Q 007132 373 NL 374 (617)
Q Consensus 373 nL 374 (617)
-|
T Consensus 139 ~l 140 (141)
T PF09113_consen 139 YL 140 (141)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 3
>PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 3PMS_A 3KS7_D 1PNF_A 1PNG_A 1PGS_A.
Probab=94.30 E-value=0.26 Score=48.81 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=56.1
Q ss_pred CccEEEEEEEEEEcceeceEEEEEEEC---------------------------------------CeEeeeeccCCccC
Q 007132 100 RLSKIVLDFEATCKGTQFDRIFGIWLG---------------------------------------GVELLRSCTAEPTR 140 (617)
Q Consensus 100 ~~s~VvL~l~~t~~G~QyDRla~v~l~---------------------------------------gvev~RtSTaEP~~ 140 (617)
....|-|+++..|.|.-|||.+.+|+= .+||-|==||-=..
T Consensus 43 ~~~~v~l~vt~~snGD~wDrtGsvFvip~~~~~~~l~~~~g~~~~P~~~~~~~~y~gi~~t~~y~p~iELmRF~TPFgv~ 122 (177)
T PF09112_consen 43 NVMTVFLEVTQSSNGDAWDRTGSVFVIPKDSKINFLDLAQGKKKLPEYDSGNGEYQGIIATDDYLPPIELMRFITPFGVG 122 (177)
T ss_dssp TEEEEEEEEEEEEGG--S--EEEEEEEETTTTEEEHHHHHH--------HHHHT-TTSS-BTTB---EEEEEEE--SSSB
T ss_pred cceEEEEEEEecCCCCcccccceEEEEeCCcCcchhhhhccccccccccccccceeeeeeccccCchhHhhhhhhhhhcc
Confidence 677899999999999999999999972 37999998876643
Q ss_pred C-------ceeEE----EEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEe
Q 007132 141 T-------GIVWS----VEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHF 190 (617)
Q Consensus 141 ~-------gI~Wt----v~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~f 190 (617)
. +-.|. ++.|||.+.+||+ +...+-+.++|+-... |.|+|.+.|
T Consensus 123 ~~~~~~v~~~~W~~~v~w~qDIT~L~plL~--ge~~igi~i~~w~~~G----~~vSl~l~~ 177 (177)
T PF09112_consen 123 HFNYNPVYGPKWEDSVPWRQDITDLYPLLK--GEVYIGIFIDNWDKEG----YKVSLDLDY 177 (177)
T ss_dssp STTCC-TT-----STCEEEEE-GGGTTTSS--EEEEEEEEE---STT-----EEEEEEEEE
T ss_pred ccccccccccCccccceeEEEchHhHHhhC--CCeEEEEEEcccccCc----eEEEEEecC
Confidence 2 22454 7899999999999 4677888888877553 678887765
No 4
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=75.37 E-value=7 Score=36.83 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=34.6
Q ss_pred eeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC
Q 007132 293 FREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA 364 (617)
Q Consensus 293 fREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~ 364 (617)
.....|+|||+++|.-. || ..++++|||++| ..|++++|+|.|.+.
T Consensus 95 ~~~a~v~vNG~~vg~~~-------~~----------------~~~~~~dIt~~l---~~g~~N~l~V~v~~~ 140 (167)
T PF02837_consen 95 DYAAEVYVNGKLVGSHE-------GG----------------YTPFEFDITDYL---KPGEENTLAVRVDNW 140 (167)
T ss_dssp ESEEEEEETTEEEEEEE-------ST----------------TS-EEEECGGGS---SSEEEEEEEEEEESS
T ss_pred eEeeEEEeCCeEEeeeC-------CC----------------cCCeEEeChhhc---cCCCCEEEEEEEeec
Confidence 36789999999999831 22 225999999975 458889999999863
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=48.00 E-value=38 Score=39.25 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=37.1
Q ss_pred CCceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC
Q 007132 290 NGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA 364 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~ 364 (617)
.|-...-.|+|||+.||.- .||-.| +++|||++|- .|+..+|.|.|.|.
T Consensus 89 egv~~~a~V~lNG~~vg~~-------~~~~~~----------------f~~DIT~~l~---~G~~n~L~V~v~n~ 137 (604)
T PRK10150 89 GSVTHYAKVWVNGQEVMEH-------KGGYTP----------------FEADITPYVY---AGKSVRITVCVNNE 137 (604)
T ss_pred CcccceEEEEECCEEeeeE-------cCCccc----------------eEEeCchhcc---CCCceEEEEEEecC
Confidence 3556788999999999942 344443 7999999875 47766899999875
No 6
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=47.93 E-value=64 Score=30.28 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=44.1
Q ss_pred eeccCCCCCCCCCccEEEEEEEEEEcceeceEEEEEEECCeEeeeeccCCccCCceeEEEEEehhhhHhhhccCCC-ccE
Q 007132 88 TNYTPPSHCTTHRLSKIVLDFEATCKGTQFDRIFGIWLGGVELLRSCTAEPTRTGIVWSVEKDITRYHSLLVKNQT-QPL 166 (617)
Q Consensus 88 ~~Y~PP~~c~~~~~s~VvL~l~~t~~G~QyDRla~v~l~gvev~RtSTaEP~~~gI~Wtv~KDvT~Y~sLf~~~~~-~~l 166 (617)
..++-|... .-.+++|++.. . |..+.|||||..|-+.--. +=.++-|||.|. +. +. ..|
T Consensus 74 ~~f~lp~~~---~~~~~~L~f~g----v--~~~a~v~vNG~~vg~~~~~-------~~~~~~dIt~~l---~~-g~~N~l 133 (167)
T PF02837_consen 74 RTFTLPADW---KGKRVFLRFEG----V--DYAAEVYVNGKLVGSHEGG-------YTPFEFDITDYL---KP-GEENTL 133 (167)
T ss_dssp EEEEESGGG---TTSEEEEEESE----E--ESEEEEEETTEEEEEEEST-------TS-EEEECGGGS---SS-EEEEEE
T ss_pred EEEEeCchh---cCceEEEEecc----c--eEeeEEEeCCeEEeeeCCC-------cCCeEEeChhhc---cC-CCCEEE
Confidence 345555532 23566666543 3 6778899999999764221 225788999863 43 34 678
Q ss_pred EEEEcceecce
Q 007132 167 AVYLGNIVDST 177 (617)
Q Consensus 167 ~~~L~NiVd~~ 177 (617)
.|.+.|..+..
T Consensus 134 ~V~v~~~~~~~ 144 (167)
T PF02837_consen 134 AVRVDNWPDGS 144 (167)
T ss_dssp EEEEESSSGGG
T ss_pred EEEEeecCCCc
Confidence 99888877654
No 7
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=32.21 E-value=75 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=27.0
Q ss_pred EEEEECCeEEEEECccceEEeCCccCCCccccccCCCCC--CCceeEEccccccccccCCeeEEEEEEEc
Q 007132 296 VVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFD--LPSYDIEITPFLGNILDGEIHKFGFSVTN 363 (617)
Q Consensus 296 V~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFd--lp~y~iDlTPfLp~L~DG~~H~~~i~V~n 363 (617)
-+++|||+.||.-. .+|. --.++ ..--.+||||||-. | +..|++.|.+
T Consensus 16 Y~l~vNG~~V~~~~---------l~P~-------~t~y~~~~~Y~tyDVt~~L~~---G-~N~iav~lg~ 65 (172)
T PF08531_consen 16 YELYVNGERVGDGP---------LAPG-------WTDYDKRVYYQTYDVTPYLRP---G-ENVIAVWLGN 65 (172)
T ss_dssp EEEEETTEEEEEE------------------------BTTEEEEEEEE-TTT--T---T-EEEEEEEEEE
T ss_pred EEEEECCEEeeCCc---------cccc-------cccCCCceEEEEEeChHHhCC---C-CCEEEEEEeC
Confidence 36899999999754 1221 11222 22346899999876 7 5688888854
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.40 E-value=17 Score=32.76 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=10.9
Q ss_pred CCCCcchhhhHHHhhhhccccccc
Q 007132 1 MAFSRFPLLQSVFLLLQLLSTDAN 24 (617)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (617)
|| |-..|||.+||.+++++++.+
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhh
Confidence 77 444444444444444554444
No 9
>PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 3PMS_A 3KS7_D 1PNF_A 1PNG_A 1PGS_A.
Probab=28.64 E-value=84 Score=31.59 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=28.1
Q ss_pred ccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-cccEEEeeEEE
Q 007132 324 WAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA-LNVWLIDANLH 375 (617)
Q Consensus 324 WrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~-~~~W~vsgnL~ 375 (617)
.+||-+..==+--.|+-|||+|+|+|.+ +-.|++-+.+= ...|.+|.+|-
T Consensus 126 ~~~v~~~~W~~~v~w~qDIT~L~plL~g--e~~igi~i~~w~~~G~~vSl~l~ 176 (177)
T PF09112_consen 126 YNPVYGPKWEDSVPWRQDITDLYPLLKG--EVYIGIFIDNWDKEGYKVSLDLD 176 (177)
T ss_dssp CC-TT-----STCEEEEE-GGGTTTSSE--EEEEEEEE---STT-EEEEEEEE
T ss_pred cccccccCccccceeEEEchHhHHhhCC--CeEEEEEEcccccCceEEEEEec
Confidence 4444444433444699999999998754 66777777653 34588888874
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=25.47 E-value=1.2e+02 Score=37.94 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc------
Q 007132 290 NGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN------ 363 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n------ 363 (617)
.|-.....|+|||+.||.-- ||-.| +++|||++|-. |+ ++|.|.|.+
T Consensus 133 eGV~s~a~VwvNG~~VG~~~-------g~~~p----------------fefDIT~~l~~---G~-N~LaV~V~~~~d~s~ 185 (1021)
T PRK10340 133 DGVETYFEVYVNGQYVGFSK-------GSRLT----------------AEFDISAMVKT---GD-NLLCVRVMQWADSTY 185 (1021)
T ss_pred CccceEEEEEECCEEecccc-------CCCcc----------------EEEEcchhhCC---Cc-cEEEEEEEecCCCCc
Q ss_pred --CcccEEEee
Q 007132 364 --ALNVWLIDA 372 (617)
Q Consensus 364 --~~~~W~vsg 372 (617)
..+.|..+|
T Consensus 186 le~qd~w~~sG 196 (1021)
T PRK10340 186 LEDQDMWWLAG 196 (1021)
T ss_pred cccCCcccccc
No 11
>PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc). PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage.
Probab=23.26 E-value=2.4e+02 Score=31.95 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCCCCccEEEEEEEEEEcceeceEEEEEEECCeE--eeeeccCCccCCceeEEEEEehhhhHhhhccCCCccEEEEEcce
Q 007132 96 CTTHRLSKIVLDFEATCKGTQFDRIFGIWLGGVE--LLRSCTAEPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGNI 173 (617)
Q Consensus 96 c~~~~~s~VvL~l~~t~~G~QyDRla~v~l~gve--v~RtSTaEP~~~gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~Ni 173 (617)
||.++|-.|.+.++....|.++--- -||=||+. +||=-++=-.= -.-+++-|||.|+.||...++.+|.+.+-|+
T Consensus 215 ~G~gpfReV~V~iDg~lag~~~PfP-vIfTGGI~P~lWrPI~~i~aF--dl~~y~iDlTPfLp~L~dg~~h~~~i~V~~~ 291 (427)
T PF12222_consen 215 YGNGPFREVQVYIDGQLAGVVWPFP-VIFTGGINPFLWRPIVGIGAF--DLPSYDIDLTPFLPLLWDGKPHTFEIRVVNA 291 (427)
T ss_pred cCCCCcEEEEEEECCEEEEEECCCC-eEEeCCcCcccccccCCCccc--CCCceeEEeccchhcccCCCccEEEEEEEcc
Confidence 4567999999999888888877443 36678876 45533322111 1346999999999999853346799999997
Q ss_pred ecce---------eeeEEEEEEEEEeecCC
Q 007132 174 VDST---------YTGVYHVNITIHFYPAE 194 (617)
Q Consensus 174 Vd~~---------yTG~f~vtltl~fY~~~ 194 (617)
.++. ....+.|+-.|+.|-.+
T Consensus 292 ~~~~~g~~~~~~~v~~~W~VsgnL~lwld~ 321 (427)
T PF12222_consen 292 EDDGDGSATLTNSVGSNWYVSGNLFLWLDS 321 (427)
T ss_pred cccccccccccCccCceEEEEEEEEEEECC
Confidence 6543 33468899999999763
Done!