Query 007132
Match_columns 617
No_of_seqs 149 out of 174
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ks7_A Putative putative pngas 98.7 9E-07 3.1E-11 93.5 20.9 225 102-375 65-394 (397)
2 3pms_A Peptide:N-glycosidase F 98.4 3.3E-06 1.1E-10 87.6 14.8 231 74-363 19-284 (326)
3 3lpf_A Beta-glucuronidase; alp 57.6 15 0.00053 40.8 6.9 48 292-365 93-140 (605)
4 3cmg_A Putative beta-galactosi 57.4 17 0.00057 41.0 7.2 48 291-364 74-121 (667)
5 3fn9_A Putative beta-galactosi 46.3 33 0.0011 39.1 7.3 49 291-365 85-133 (692)
6 2okx_A Rhamnosidase B; alpha b 45.8 35 0.0012 40.1 7.6 70 243-364 27-97 (956)
7 3hn3_A Beta-G1, beta-glucuroni 44.0 25 0.00084 39.1 5.7 46 294-365 108-156 (613)
8 3ks7_A Putative putative pngas 41.1 90 0.0031 33.4 9.0 75 305-381 134-212 (397)
9 3gm8_A Glycoside hydrolase fam 36.7 39 0.0013 39.2 6.0 47 292-365 92-138 (801)
10 3pms_A Peptide:N-glycosidase F 36.7 3.5E+02 0.012 28.3 12.5 41 338-380 99-140 (326)
11 3oba_A Beta-galactosidase; TIM 31.4 81 0.0028 37.7 7.7 43 294-363 141-183 (1032)
12 2vzp_A Aocbm35, EXO-beta-D-glu 29.0 1.1E+02 0.0037 26.5 6.4 49 294-363 67-115 (127)
13 1uy4_A Endo-1,4-beta-xylanase 27.9 1.1E+02 0.0038 27.6 6.4 79 245-325 62-140 (145)
14 2je8_A Beta-mannosidase; glyco 25.7 97 0.0033 36.0 6.9 47 291-364 90-136 (848)
15 1od3_A Putative xylanase; hydr 21.8 1.6E+02 0.0055 27.3 6.4 80 244-325 83-162 (168)
16 3pe9_A Fibronectin(III)-like m 21.5 1.1E+02 0.0038 26.2 4.8 43 290-363 29-71 (98)
17 3bga_A Beta-galactosidase; NYS 20.5 1.4E+02 0.0049 35.5 7.0 44 293-363 153-196 (1010)
No 1
>3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F (pngase F), structural GENO joint center for structural genomics; 2.30A {Bacteroides fragilis nctc 9343}
Probab=98.71 E-value=9e-07 Score=93.47 Aligned_cols=225 Identities=23% Similarity=0.308 Sum_probs=150.1
Q ss_pred cEEEEEEEEEEcceeceEEEEEEE-------------C---------------------------CeEeeeeccCCccC-
Q 007132 102 SKIVLDFEATCKGTQFDRIFGIWL-------------G---------------------------GVELLRSCTAEPTR- 140 (617)
Q Consensus 102 s~VvL~l~~t~~G~QyDRla~v~l-------------~---------------------------gvev~RtSTaEP~~- 140 (617)
..|.|+++..++|.-|||-+.+|| . .+||.|-=||---.
T Consensus 65 ~~v~~~~~~~SnGD~~DktGS~Fvip~~~~~~~l~i~~g~~~~P~~~~~~~~~~~Gii~~~~Y~p~~ElmRf~TpfGvg~ 144 (397)
T 3ks7_A 65 VSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGH 144 (397)
T ss_dssp EEEEEEEEEEESSCCSCCEEEEEECCSSCSBCHHHHHTTCCCCCCCCHHHHTTCTTSSCBTTBCCCEEEEEEECCSSTBT
T ss_pred CeEEEEEEEccCCCcccccCCEEEEECccccchhhhhcCcccCCceecCCcceeeeeeecCCCCCcchhhhccccccccc
Confidence 489999999999999999999997 2 47999987764321
Q ss_pred -Cc------------------eeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecCCCCCCCCc
Q 007132 141 -TG------------------IVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGNLNDRK 201 (617)
Q Consensus 141 -~g------------------I~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~ 201 (617)
++ =.++.+.|||.+.+||+ +...+.+.++|+-. +-|.|+|.+.|+...
T Consensus 145 ~~~~~~~~~~k~~pvyi~~W~d~v~W~qDITdL~pLL~--Gev~iGi~i~nW~~----~G~~vSL~l~f~~g~------- 211 (397)
T 3ks7_A 145 YSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLE--GEAYVGIYIDTWTS----EGYLVNADIDVKESR------- 211 (397)
T ss_dssp TCCSSCGGGTTTSCTTCCCCCSCEEEEEECGGGGGGTB--EEEEEEEEECCCSS----SCEEEEEEEEEEECS-------
T ss_pred cccccccchhcCCcccccccccCceEEeEchhhHHhhC--CCeEEEEEeccccc----ccEEEEEEEEEecCC-------
Confidence 11 12456889999999999 45666666666543 357899999999762
Q ss_pred CCCCcccccCCCCCCEEEeCcCCCCCCCCeeEE-EecCCCcceeeEecCCCceEEEEEEEeecCCCceeeecCCCchhhc
Q 007132 202 HDLDSLASRFYSNADLILPISRNLPMNDGLWFE-IKNSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFS 280 (617)
Q Consensus 202 ~~~~~~l~~~~~~aD~IiPis~~~~~~~g~~f~-i~n~~d~~~~~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~ 280 (617)
... ...+...|+||-... .--|+.|. +-+. ......+++|.|+..|.|-..++|||.++ | =++|..
T Consensus 212 ~~~------~~~~~~~V~PLfNt~-~~~Gq~Y~d~fn~-k~l~v~Ftlp~~~knv~Lr~itTGHGg~~----g-gdEFc~ 278 (397)
T 3ks7_A 212 LAC------DVLPKRHVEPLMNTV-YYMGQSYPDIFAR-RDVSTDFTVPKGAKNIRLKYIVTGHGGHS----G-GDEFVQ 278 (397)
T ss_dssp CTT------CBCCCEEEEEEEECC-CCSSCCCCCGGGT-CCEEEEEEECTTCEEEEEEEEEEEECCST----T-STTTSC
T ss_pred cch------hccccceEEEeeccc-cccCccccchhcc-cceeEEEEcCCCccEEEEEEEEecCCCCC----C-CCcccc
Confidence 111 233467899997632 11144442 2233 34568899999999999999999998632 2 233321
Q ss_pred ccccCCCCCCCceeEEEEEECCeEEEEECcc-------ceEE--eCCc----------------------------cCCC
Q 007132 281 MNHLNRTLENGPFREVVVSLDGEVVGAIWPF-------SVIY--TGGI----------------------------SPLF 323 (617)
Q Consensus 281 ~~~~~~~~g~GpfREV~V~iDG~laGv~~Pf-------PvIf--TGGI----------------------------~P~l 323 (617)
|+=.|+|||.++=.-.|- +..- +|++ +=.-
T Consensus 279 -------------k~h~v~vdG~~v~~~~pWr~dC~s~r~~Np~sG~W~~~~~a~~~~~~g~~~ke~e~~lsSSDlSRsN 345 (397)
T 3ks7_A 279 -------------KRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSN 345 (397)
T ss_dssp -------------CCEEEEETTEEEEEECCCBSCGGGGGGGCTTCCEEEEEEEEEEEETTEEEEEEEEEEEEGGGSCBSS
T ss_pred -------------eeeEEEECCEEeEEeccccccccccccccCCCCccccccchhhcccccccchhhccccccccccccc
Confidence 555788888888655543 2221 2221 1234
Q ss_pred ccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-------cccEEEeeEEE
Q 007132 324 WAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA-------LNVWLIDANLH 375 (617)
Q Consensus 324 WrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~-------~~~W~vsgnL~ 375 (617)
|=|=. +.++..|+|.-.. -| .|+|.|.|..| .+.|.|||-|+
T Consensus 346 WCPG~-----~v~p~~i~Lg~l~----~G-~Ht~~v~iP~a~~~~g~~~~~W~VS~~lv 394 (397)
T 3ks7_A 346 WCPGS-----DVVPEEAVIGTLA----PG-KHTFTVSIPEAQAVDGNKLNHWLVSAYLV 394 (397)
T ss_dssp CCTTC-----EECCEEEEEECCC----SE-EEEEEEECTTCCCCBTTBCCEEEEEEEEE
T ss_pred CCCCc-----ccCceEEeccccC----CC-ceEEEEECCCCcccCCcccceEEEEEEEe
Confidence 54422 3456777765433 34 89999999854 47999999764
No 2
>3pms_A Peptide:N-glycosidase F; jelly roll fold, N-glycanase, hydrolase; HET: GOL; 1.57A {Elizabethkingia meningoseptica} PDB: 1pgs_A 1pnf_A* 1png_A
Probab=98.40 E-value=3.3e-06 Score=87.65 Aligned_cols=231 Identities=18% Similarity=0.245 Sum_probs=153.6
Q ss_pred eeecCccCCCCCeeeeccCCCCCCCCCccEEEEEEEEEEcce---eceEEEEEEE------CCeEeeeeccCCccCC---
Q 007132 74 SHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATCKGT---QFDRIFGIWL------GGVELLRSCTAEPTRT--- 141 (617)
Q Consensus 74 ~h~F~nSyg~Pp~~~~Y~PP~~c~~~~~s~VvL~l~~t~~G~---QyDRla~v~l------~gvev~RtSTaEP~~~--- 141 (617)
...||+.+++- +.+.++=|.+. .++++|.|.+..+|-|+ -+||.+.||| .+.||-|==||-=...
T Consensus 19 ~~~~~~~~~~~-a~~~v~lP~~~--~~~~~i~l~~~~sCp~~~C~~WD~~~~v~v~~~~~~~~~ELgRfITPfg~~~~~~ 95 (326)
T 3pms_A 19 KNAFGDGLSQS-AEGTFTFPADV--TAVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWVGTEKL 95 (326)
T ss_dssp EECCSTTCCSE-EEEEEEECSCC--TTEEEEEEEEEECCGGGCSCCSCCEEEEEEECTTTCCEEEEEEEECCSSSCSTTS
T ss_pred hhhccCcccce-eEEEEECCccc--ccccEEEEEEEccCCCCCCCCccceeeEEEEeCCCCCcEEEEEeeeccccccccC
Confidence 45699999985 66788877764 58999999999999875 7999999998 6789988777655422
Q ss_pred ceeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecCCCCCCCCcCCCCcccccCCCCCCEEEeC
Q 007132 142 GIVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGNLNDRKHDLDSLASRFYSNADLILPI 221 (617)
Q Consensus 142 gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~~~~~~~l~~~~~~aD~IiPi 221 (617)
+-.| +-|||.|.+||++ ...+.+..+|+... -|.++|.+.|+... . ...+-.|+||
T Consensus 96 ~~~W--~~DVTdl~pLL~g--~~~i~i~~~~w~~~----g~~vsl~f~~~~~~-------~---------~~~~~~v~PL 151 (326)
T 3pms_A 96 PRGL--EIDVTDFKSLLSG--NTELKIYTETWLAK----GREYSVDFDIVYGT-------P---------DYKYSAVVPV 151 (326)
T ss_dssp TTCE--EEECGGGTTTSSE--EEEEEEEECCCSTT----CEEEEEEEEEEESC-------C---------SCSEEEEEEE
T ss_pred CCCC--EEEchhhHHhhcC--CeEEEEEEecccCC----CEEEEEEEEEcCCC-------C---------ccceEEEEee
Confidence 2367 8999999999994 67777777776544 38899999999763 1 1123568999
Q ss_pred cCCC-CCCCCeeEEEecCCCcceeeEecCCCceEEEEEEEeecCCC-----------ceeeecCCCchhhcccccCCCCC
Q 007132 222 SRNL-PMNDGLWFEIKNSVDTQEKEFRTPKNVYRAVLEVYLSFHER-----------DEFWYANLPNEFFSMNHLNRTLE 289 (617)
Q Consensus 222 s~~~-~~~~g~~f~i~n~~d~~~~~v~iP~Nt~rA~lev~aSg~~~-----------eEFWYsNvpd~y~~~~~~~~~~g 289 (617)
.... ..-+|..|..+..-+ ....+++|.++.+|.|-..++|||. +|| +
T Consensus 152 fnt~n~~~~g~~Y~~~d~fn-l~v~ftlp~~~k~a~L~~iiTGHG~~~~~~~d~~gc~EF---c---------------- 211 (326)
T 3pms_A 152 VQYNKSSIDGVPYGKAHTLA-LKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEW---C---------------- 211 (326)
T ss_dssp EEECSSGGGSEESSSCCCCC-CEEEEECCTTCSEEEEEEEEEEECEEEEEETTTEEEETT---S----------------
T ss_pred ecCCcccccccccCCCcccc-ceEEEecCCccceEEEEEEEecCCCCccCCcCCCCccee---c----------------
Confidence 7530 011123332111112 4688999999999999999999988 555 2
Q ss_pred CCceeEEEEEECCeEEEEECc-------cceEEeC-C-ccC--CCccccccCCCCCCCceeEEccccccccccCCeeEEE
Q 007132 290 NGPFREVVVSLDGEVVGAIWP-------FSVIYTG-G-ISP--LFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFG 358 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~P-------fPvIfTG-G-I~P--~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~ 358 (617)
.|+=.|+|||.++=.-.| |++.=.+ | +-+ .-|=|=. ..++..+.+ +-+.-|++|+|+
T Consensus 212 ---~k~H~i~vNG~~vf~~~~wr~dCas~r~~Nq~sGnW~~gRsnWCPG~-----~V~P~~~~l----~t~~aG~t~ti~ 279 (326)
T 3pms_A 212 ---FRTHTIAINNSNTFQHQLGALGCSANPINNQSPGNWTPDRAGWCPGM-----AVPTRIDVL----NNSLIGSTFSYE 279 (326)
T ss_dssp ---CEEEEEEETTEEEEEEEECCCCGGGCSCCCCTTSSCSSCCSSCCTTE-----ECCCEEEEC----CGGGTTSEEEEE
T ss_pred ---ceeeEEEECCEEeeecCCCccchhhcCcCCCCCcccccCcCCCCCCC-----ccCcEEeec----ccccCCCeeEEE
Confidence 277789999987433322 2222111 1 111 1233321 123343322 234468899999
Q ss_pred EEEEc
Q 007132 359 FSVTN 363 (617)
Q Consensus 359 i~V~n 363 (617)
..+.+
T Consensus 280 yki~~ 284 (326)
T 3pms_A 280 YKFQN 284 (326)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 98864
No 3
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Probab=57.62 E-value=15 Score=40.85 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=35.9
Q ss_pred ceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcCc
Q 007132 292 PFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNAL 365 (617)
Q Consensus 292 pfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~~ 365 (617)
-...-.|+|||+.||.- .+.|. ++++|||++|- .|+.+.|.|.|.|..
T Consensus 93 v~~~a~V~vNG~~vg~~---------------------~~~~~--p~~~dit~~l~---~G~nn~l~V~v~n~~ 140 (605)
T 3lpf_A 93 VTHYGKVWVNNQEVMEH---------------------QGGYT--PFEADVTPYVI---AGKSVRITVCVNNEL 140 (605)
T ss_dssp CBSEEEEEESSCEEEEE---------------------CCSSS--CEEEECGGGCC---TTSEEEEEEEEECCC
T ss_pred cceEEEEEECCEEEEEE---------------------cCCCC--cceeechhhcc---CCCeEEEEEEEecCC
Confidence 34677899999999942 23333 38999998875 588778999998764
No 4
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=57.39 E-value=17 Score=40.97 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=36.4
Q ss_pred CceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC
Q 007132 291 GPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA 364 (617)
Q Consensus 291 GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~ 364 (617)
|-...-.|+|||+.||.- .|| | .++++|||++|- .|++..|.|+|.|.
T Consensus 74 gv~~~a~V~vNG~~vg~~-------~~~--------------~--~~~~~dit~~l~---~G~~N~l~V~v~~~ 121 (667)
T 3cmg_A 74 GVNSIADVFINRKHIGEH-------RGG--------------Y--GAFIFEITDLVK---YGEKNSVLVRANNG 121 (667)
T ss_dssp CCBSEEEEEETTEEEEEE-------ECS--------------S--SCEEEECTTTSC---TTSEEEEEEEEECC
T ss_pred CccceeEEEECCEEEeee-------cCC--------------c--ccEEEECCHHHC---CCCCcEEEEEEecC
Confidence 334677899999999963 233 2 248999999874 58788999999875
No 5
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=46.35 E-value=33 Score=39.11 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=36.3
Q ss_pred CceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcCc
Q 007132 291 GPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNAL 365 (617)
Q Consensus 291 GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~~ 365 (617)
|-.....|+|||+.||.- .||- .++++|||++|- .|++..|.|.|.|..
T Consensus 85 gv~~~a~V~vNG~~vg~~-------~~g~----------------~~f~~dIt~~l~---~G~~N~l~V~v~~~~ 133 (692)
T 3fn9_A 85 GVGACAEVYVNGKLAGTH-------KGGY----------------SAFACEIGTALK---LGAENEIIVKADNKA 133 (692)
T ss_dssp CCBSEEEEEETTEEEEEE-------ECTT----------------SCEEEECGGGCC---TTEEEEEEEEEECCC
T ss_pred CccEeeEEEECCEEeeeE-------cCCc----------------ceEEEEChHhcC---CCCceEEEEEEECCC
Confidence 334677899999999962 2333 247899998764 487889999998753
No 6
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=45.80 E-value=35 Score=40.11 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=49.2
Q ss_pred eeeEecCCCc-eEEEEEEEeecCCCceeeecCCCchhhcccccCCCCCCCceeEEEEEECCeEEEEECccceEEeCCccC
Q 007132 243 EKEFRTPKNV-YRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGPFREVVVSLDGEVVGAIWPFSVIYTGGISP 321 (617)
Q Consensus 243 ~~~v~iP~Nt-~rA~lev~aSg~~~eEFWYsNvpd~y~~~~~~~~~~g~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P 321 (617)
.+.+++|+.. .+|+|-|.+-| -| +++|||+.||. .|
T Consensus 27 Rk~f~~~~~~~~~a~l~i~a~g----------------------------~y---~~~iNG~~vg~------------~p 63 (956)
T 2okx_A 27 RGSFDAPASVEGPAMLHITADS----------------------------RY---VLFVNGEQVGR------------GP 63 (956)
T ss_dssp EEEEECCSCCSSCCEEEEEEES----------------------------EE---EEEETTEEEEE------------EC
T ss_pred EEEEECCCCccCceEEEEEecC----------------------------cE---EEEECCEECCC------------CC
Confidence 3678889888 88888777644 12 79999999998 24
Q ss_pred CCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC
Q 007132 322 LFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA 364 (617)
Q Consensus 322 ~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~ 364 (617)
. |. ..-......+||||+|- .|+.+.|++.|-+.
T Consensus 64 ~-~~-----~~~~~~y~~~Dvt~~L~---~G~~N~i~v~~~~~ 97 (956)
T 2okx_A 64 V-RS-----WPKEQFYDSYDIGGQLR---PGVRNTIAVLVLHF 97 (956)
T ss_dssp C-CC-----BTTEEEEEEEECTTTCC---TTSEEEEEEEEEEC
T ss_pred C-cc-----ccccccceEEechhhcC---CCCCcEEEEEEEec
Confidence 4 32 01223346799999985 47678999988653
No 7
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Probab=44.03 E-value=25 Score=39.07 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=33.3
Q ss_pred eEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCe---eEEEEEEEcCc
Q 007132 294 REVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEI---HKFGFSVTNAL 365 (617)
Q Consensus 294 REV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~---H~~~i~V~n~~ 365 (617)
-.-.|+|||+.||.- .| .| .++++|||++|- .|+. +.|.|.|.|..
T Consensus 108 ~~a~V~vNG~~vg~~-------~~--------------g~--~~~~~dit~~l~---~g~~~~~n~l~V~v~n~~ 156 (613)
T 3hn3_A 108 SYAIVWVNGVDTLEH-------EG--------------GY--LPFEADISNLVQ---VGPLPSRLRITIAINNTL 156 (613)
T ss_dssp SEEEEEETTEEEEEE-------ES--------------SS--SCEEEECHHHHC---CC---CCEEEEEEEECCC
T ss_pred eEEEEEECCEEEeEE-------cC--------------Cc--ceEEEEChhhhc---CCCCCcceEEEEEEeCCC
Confidence 567899999999961 22 33 248999998764 4765 89999998754
No 8
>3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F (pngase F), structural GENO joint center for structural genomics; 2.30A {Bacteroides fragilis nctc 9343}
Probab=41.06 E-value=90 Score=33.39 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=48.7
Q ss_pred EEEECccceEEeCCcc--CCC-ccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-cccEEEeeEEEEEEeC
Q 007132 305 VGAIWPFSVIYTGGIS--PLF-WAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA-LNVWLIDANLHLWLDS 380 (617)
Q Consensus 305 aGv~~PfPvIfTGGI~--P~l-WrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~-~~~W~vsgnL~lwlD~ 380 (617)
.=...||=|=|-.+++ |.. =||+-=..==|--+++.|||+|+|+|-+ +-.+++.+.+= ..-|.+|.+|-...+.
T Consensus 134 mRf~TpfGvg~~~~~~~~~~~k~~pvyi~~W~d~v~W~qDITdL~pLL~G--ev~iGi~i~nW~~~G~~vSL~l~f~~g~ 211 (397)
T 3ks7_A 134 MRFMTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEG--EAYVGIYIDTWTSEGYLVNADIDVKESR 211 (397)
T ss_dssp EEEECCSSTBTTCCSSCGGGTTTSCTTCCCCCSCEEEEEECGGGGGGTBE--EEEEEEEECCCSSSCEEEEEEEEEEECS
T ss_pred hhccccccccccccccccchhcCCcccccccccCceEEeEchhhHHhhCC--CeEEEEEecccccccEEEEEEEEEecCC
Confidence 3456788776655553 211 1343322223445799999999998855 36777666653 4689999999998765
Q ss_pred C
Q 007132 381 R 381 (617)
Q Consensus 381 ~ 381 (617)
.
T Consensus 212 ~ 212 (397)
T 3ks7_A 212 L 212 (397)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}
Probab=36.68 E-value=39 Score=39.21 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=35.0
Q ss_pred ceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcCc
Q 007132 292 PFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNAL 365 (617)
Q Consensus 292 pfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~~ 365 (617)
-.....|+|||+.||.- -+.|. ++++|||++|- .|+ +.|.|+|.|..
T Consensus 92 v~~~a~V~vNG~~vG~~---------------------~~g~~--pf~~DIT~~Lk---~G~-N~L~V~V~n~~ 138 (801)
T 3gm8_A 92 VYLNSEVWINGHWLGKR---------------------PNGYI--SFVYDLTPYLQ---EGK-NQIAVKVDHSK 138 (801)
T ss_dssp CBSCEEEEETTEEEEEE---------------------CCSSC--CEEEECGGGCC---SSE-EEEEEEEEECS
T ss_pred cceEEEEEECCEEeecc---------------------cCCcc--cEEEECcHhcc---CCC-cEEEEEEECCC
Confidence 34567899999999953 12332 47999999874 576 89999999864
No 10
>3pms_A Peptide:N-glycosidase F; jelly roll fold, N-glycanase, hydrolase; HET: GOL; 1.57A {Elizabethkingia meningoseptica} PDB: 1pgs_A 1pnf_A* 1png_A
Probab=36.68 E-value=3.5e+02 Score=28.25 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=27.3
Q ss_pred eeEEccccccccccCCeeEEEEEEEcC-cccEEEeeEEEEEEeC
Q 007132 338 YDIEITPFLGNILDGEIHKFGFSVTNA-LNVWLIDANLHLWLDS 380 (617)
Q Consensus 338 y~iDlTPfLp~L~DG~~H~~~i~V~n~-~~~W~vsgnL~lwlD~ 380 (617)
...|||+|+|+|- +.-+|+|...+= ..-|.++.++-+-.+.
T Consensus 99 W~~DVTdl~pLL~--g~~~i~i~~~~w~~~g~~vsl~f~~~~~~ 140 (326)
T 3pms_A 99 LEIDVTDFKSLLS--GNTELKIYTETWLAKGREYSVDFDIVYGT 140 (326)
T ss_dssp EEEECGGGTTTSS--EEEEEEEEECCCSTTCEEEEEEEEEEESC
T ss_pred CEEEchhhHHhhc--CCeEEEEEEecccCCCEEEEEEEEEcCCC
Confidence 3999999999986 345666654432 2447777777765544
No 11
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Probab=31.37 E-value=81 Score=37.71 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=32.1
Q ss_pred eEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc
Q 007132 294 REVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN 363 (617)
Q Consensus 294 REV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n 363 (617)
....|+|||+.||.- -| +|. ++++|||++|- +| ++.|.|+|.+
T Consensus 141 ~~a~V~vNG~~vG~~-------~g--------------g~~--p~~~DIT~~lk---~G-~N~L~V~V~~ 183 (1032)
T 3oba_A 141 NCYELYVNGQYVGFN-------KG--------------SRN--GAEFDIQKYVS---EG-ENLVVVKVFK 183 (1032)
T ss_dssp SEEEEEETTEEEEEE-------EC--------------TTS--CEEEECTTTCC---SE-EEEEEEEEES
T ss_pred eeEEEEECCEEEEEE-------eC--------------Ccc--cEEEEChhhcc---CC-cEEEEEEEEC
Confidence 456899999999952 23 332 37999999764 45 6799999975
No 12
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=28.99 E-value=1.1e+02 Score=26.48 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=32.0
Q ss_pred eEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc
Q 007132 294 REVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN 363 (617)
Q Consensus 294 REV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n 363 (617)
|.+.|+|||..++....||- ||+++ -|.-+ +..|. |-.| .|+|.|....
T Consensus 67 ~~~~l~VnG~~~~~~v~~p~--tg~W~--~w~~~---------~~~v~-------L~aG-~ntI~l~~~~ 115 (127)
T 2vzp_A 67 RPLDFSVNGSISASGVAFGS--TGTWP--AWTTK---------TVRVT-------LAAG-VNKIKAVATT 115 (127)
T ss_dssp CCEEEEETTEEEEEEECCCC--CSSTT--CCEEE---------EEEEE-------ECSE-EEEEEEEECS
T ss_pred eEEEEEECCEEeeeEEEecC--CCCCC--ceEEE---------EEEEE-------ECCC-ceEEEEEEeC
Confidence 89999999998865556653 78776 25432 11222 3345 6999998753
No 13
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=27.91 E-value=1.1e+02 Score=27.64 Aligned_cols=79 Identities=6% Similarity=0.034 Sum_probs=43.1
Q ss_pred eEecCCCceEEEEEEEeecCCCceeeecCCCchhhcccccCCCCCCCceeEEEEEECCeEEEEECccceEEeCCccCCCc
Q 007132 245 EFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFW 324 (617)
Q Consensus 245 ~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~~~~~~~~~g~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lW 324 (617)
.+.++.++++..+.|...+.+.=|.+-..+-...+...+.....|-..|++|...|.. ..|+--=| ++|+|++|-.+|
T Consensus 62 ~vdf~~G~~~~~~rvas~~gg~ievrlds~~G~~lgt~~v~~Tggw~~w~tv~~~v~~-~~G~h~ly-l~f~g~~nl~~~ 139 (145)
T 1uy4_A 62 NIDFGSGATGFSATVATEVNTSIQIRSDSPTGTLLGTLYVSSTGSWNTYNTVSTNISK-ITGVHDIV-LVFSGPVNVDNF 139 (145)
T ss_dssp EEECTTCEEEEEEEEECSSCEEEEEEESSTTSCEEEEEEECCCSSTTCCEEEEEEEEE-ECSEEEEE-EEESSCCEEEEE
T ss_pred EEEcCCCCEEEEEEEEeCCCcEEEEEECCCCCcEEEEEEecCCCCCcccEEEEEEecC-CCceEEEE-EEEeCCeEEEEE
Confidence 4678778888777775444444466664432222222211111234567777777753 56655444 566777655555
Q ss_pred c
Q 007132 325 A 325 (617)
Q Consensus 325 r 325 (617)
+
T Consensus 140 ~ 140 (145)
T 1uy4_A 140 I 140 (145)
T ss_dssp E
T ss_pred E
Confidence 3
No 14
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Probab=25.68 E-value=97 Score=35.96 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=35.3
Q ss_pred CceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC
Q 007132 291 GPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA 364 (617)
Q Consensus 291 GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~ 364 (617)
|-...-.|+|||+.+|... || | .++++|||++|- .| .+.|.|.|.|.
T Consensus 90 gv~~~a~V~vNG~~vg~~~-------~~--------------~--~~~~~dIt~~l~---~G-~N~L~V~v~~~ 136 (848)
T 2je8_A 90 GLDTYADVYLNGSLLLKAD-------NM--------------F--VGYTLPVKSVLR---KG-ENHLYIYFHSP 136 (848)
T ss_dssp CCBSEEEEEETTEEEEEEC-------BT--------------T--CCEEEECGGGCC---SE-EEEEEEEEECH
T ss_pred CCCceeEEEECCEEecccc-------CC--------------C--CCEEEcChHhhc---CC-CcEEEEEEeCc
Confidence 4456789999999999752 32 2 248999999764 46 58999999864
No 15
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=21.84 E-value=1.6e+02 Score=27.35 Aligned_cols=80 Identities=9% Similarity=0.113 Sum_probs=44.2
Q ss_pred eeEecCCCceEEEEEEEeecCCCceeeecCCCchhhcccccCCCCCCCceeEEEEEECCeEEEEECccceEEeCCccCCC
Q 007132 244 KEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLF 323 (617)
Q Consensus 244 ~~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~~~~~~~~~g~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~l 323 (617)
+.+.++.++++..+.|...+.+.=|.+...+-.+-+...+.....|-..|++|...|.. .+|+--=| ++|+|++|-.+
T Consensus 83 ~~vdfg~G~~~~~~rvas~~~G~ievrlds~~G~~lgt~~vp~Tggw~~w~tvt~~v~~-~~G~hdLy-lvf~G~~nldw 160 (168)
T 1od3_A 83 KNIDFGDGATSVTARVATQNATTIQVRLGSPSGTLLGTIYVGSTGSFDTYRDVSATISN-TAGVKDIV-LVFSGPVNVDW 160 (168)
T ss_dssp EEEECTTCEEEEEEEEECSSCEEEEEEESSTTSCEEEEEEECCCSSTTCCEEEEEEEEE-ECSEEEEE-EEESSCCEEEE
T ss_pred EeEEeCCCcEEEEEEEEcCCCcEEEEEECCCCCcEEEEEEeCCCCCCcccEEEEEEEcC-CCcEEEEE-EEEECCcEEEE
Confidence 34677778888777775444444466664432222222111111234467888877763 66655433 56788766655
Q ss_pred cc
Q 007132 324 WA 325 (617)
Q Consensus 324 Wr 325 (617)
|+
T Consensus 161 ~~ 162 (168)
T 1od3_A 161 FV 162 (168)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 16
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=21.51 E-value=1.1e+02 Score=26.22 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=31.0
Q ss_pred CCceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc
Q 007132 290 NGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN 363 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n 363 (617)
.|.-+.|++++||.++|... |+ +|.++.++- .| .|+|..+.++
T Consensus 29 dg~V~kVef~vdg~~vg~dt--------------~a-----------py~~~w~~~-----~G-~htl~a~AtD 71 (98)
T 3pe9_A 29 DGKISRVDFLVDGEVIGSDR--------------EA-----------PYEYEWKAV-----EG-NHEISVIAYD 71 (98)
T ss_dssp SSCEEEEEEEETTEEEEEEC--------------SS-----------SEEEEEECC-----SE-EEEEEEEEEE
T ss_pred CCCEEEEEEEECCEEecccc--------------cC-----------CEEEEEEcC-----Cc-cEEEEEEEEE
Confidence 56789999999999987642 33 366766654 34 7888888764
No 17
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=20.49 E-value=1.4e+02 Score=35.54 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=32.8
Q ss_pred eeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEc
Q 007132 293 FREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTN 363 (617)
Q Consensus 293 fREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n 363 (617)
.....|+|||+.||.- .||-. ++++|||++|- .|+ ..|.|.|.+
T Consensus 153 ~~~a~V~vNG~~vG~~-------~gg~~----------------p~~~DIT~~L~---~G~-N~L~V~V~~ 196 (1010)
T 3bga_A 153 ISFYYVWVNGKLLGYN-------QGSKT----------------AAEWDITDVLS---EGE-NVVALEVYR 196 (1010)
T ss_dssp ESEEEEEETTEEEEEE-------ECSSS----------------CEEEECGGGCC---SSE-EEEEEEEES
T ss_pred CceeEEEECCEEEeeE-------eCCCC----------------cceeehhhhcc---CCC-cEEEEEEEe
Confidence 3567899999999964 23322 47999998764 474 799999964
Done!