BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007133
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 41/278 (14%)
Query: 243 GFIHTSFLKNLWPNTVYTYRIGHLLHNGSYVWSKIYSFRASPYPGQDSLQRVVIFGDMGK 302
GFIH + ++ L NT Y Y +G L N + + +SF P G D + GD+G+
Sbjct: 77 GFIHHTTIRKLKYNTKYYYEVG--LRNTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 130
Query: 303 AERDGSNEYSNYQ--PGSLNTTDQLIRDLSNIDIVFHIGDITYANGYIS----QWDQFTA 356
+ D + S+Y+ P T V +GD++YA+ Y + +WD +
Sbjct: 131 S-FDSNTTLSHYELSPKKGQT-------------VLFVGDLSYADRYPNHDNVRWDTWGR 176
Query: 357 QVEPIASTVPYMIGSGNHERDWPNSGSFYDTTDSGGECGVPAETMFYVPAE---NRAKFW 413
E + P++ +GNHE + + + E P ++VP E + + FW
Sbjct: 177 FTERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFW 229
Query: 414 YSTDYGMFHFCIADTEHDWREGSEQYRFIEQCLASVDRRKQPWLIFAAHRVLGYSSDYWY 473
YS H + + + G+ QY ++++ L V R + PWLI H L Y+S +
Sbjct: 230 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHH 288
Query: 474 GQEGSFEEPMGRESLQRLWQKYKVDIAFFGHVHNYERT 511
EG E M R + + KYKVD+ F GHVH YER+
Sbjct: 289 FMEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 322
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 41/278 (14%)
Query: 243 GFIHTSFLKNLWPNTVYTYRIGHLLHNGSYVWSKIYSFRASPYPGQDSLQRVVIFGDMGK 302
GFIH + ++ L NT Y Y +G L N + + +SF P G D + GD+G+
Sbjct: 79 GFIHHTTIRKLKYNTKYYYEVG--LRNTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 132
Query: 303 AERDGSNEYSNYQ--PGSLNTTDQLIRDLSNIDIVFHIGDITYANGYIS----QWDQFTA 356
+ D + S+Y+ P T V +GD++YA+ Y + +WD +
Sbjct: 133 S-FDSNTTLSHYELSPKKGQT-------------VLFVGDLSYADRYPNHDNVRWDTWGR 178
Query: 357 QVEPIASTVPYMIGSGNHERDWPNSGSFYDTTDSGGECGVPAETMFYVPAE---NRAKFW 413
E + P++ +GNHE + + + E P ++VP E + + FW
Sbjct: 179 FTERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFW 231
Query: 414 YSTDYGMFHFCIADTEHDWREGSEQYRFIEQCLASVDRRKQPWLIFAAHRVLGYSSDYWY 473
YS H + + + G+ QY ++++ L V R + PWLI H L Y+S +
Sbjct: 232 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHH 290
Query: 474 GQEGSFEEPMGRESLQRLWQKYKVDIAFFGHVHNYERT 511
EG E M R + + KYKVD+ F GHVH YER+
Sbjct: 291 FMEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 324
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 41/278 (14%)
Query: 243 GFIHTSFLKNLWPNTVYTYRIGHLLHNGSYVWSKIYSFRASPYPGQDSLQRVVIFGDMGK 302
GFIH + ++ L NT Y Y +G L N + + +SF P G D + GD+G+
Sbjct: 85 GFIHHTTIRKLKYNTKYYYEVG--LRNTT----RRFSFITPPQTGLDVPYTFGLIGDLGQ 138
Query: 303 AERDGSNEYSNYQ--PGSLNTTDQLIRDLSNIDIVFHIGDITYANGYIS----QWDQFTA 356
+ D + S+Y+ P T V +GD++YA+ Y + +WD +
Sbjct: 139 S-FDSNTTLSHYELSPKKGQT-------------VLFVGDLSYADRYPNHDNVRWDTWGR 184
Query: 357 QVEPIASTVPYMIGSGNHERDWPNSGSFYDTTDSGGECGVPAETMFYVPAE---NRAKFW 413
E + P++ +GNHE + + + E P ++VP E + + FW
Sbjct: 185 FTERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFW 237
Query: 414 YSTDYGMFHFCIADTEHDWREGSEQYRFIEQCLASVDRRKQPWLIFAAHRVLGYSSDYWY 473
YS H + + + G+ QY ++++ L V R + PWLI H L Y+S +
Sbjct: 238 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHH 296
Query: 474 GQEGSFEEPMGRESLQRLWQKYKVDIAFFGHVHNYERT 511
EG E M R + + KYKVD+ F GHVH YER+
Sbjct: 297 FMEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYERS 330
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 149/360 (41%), Gaps = 54/360 (15%)
Query: 164 NSITFANP---KAPLYPRLAQGKSWDE-MTVTWTSGYDISEAAPFVEWGLKGDLQMHSPA 219
+S FA P AP + QG + ++WT+ YD + A W Q +
Sbjct: 12 DSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMG 71
Query: 220 GTLTFFQNDMCGSPARTVGWRDPGFIHTSFLKNLWPNTVYTYRIGHLLHNGSYVWSKIYS 279
+T+ + + FIH +K+L +T Y YR+G + +
Sbjct: 72 TVVTYKYYNYTSA-----------FIHHCTIKDLEYDTKYYYRLGFGDAK------RQFW 114
Query: 280 FRASPYPGQDSLQRVVIFGDMGKAERDGSNEYSNYQPGSLNTTDQLIRDLSNIDIVFHIG 339
F P PG D + GD+G+ D + ++Y+ S V +G
Sbjct: 115 FVTPPKPGPDVPYVFGLIGDIGQT-HDSNTTLTHYEQNSAKG-----------QAVLFMG 162
Query: 340 DITYANGYIS----QWDQFTAQVEPIASTVPYMIGSGNHERDW-PNSGSFYDTTDSGGEC 394
D++Y+N + + +WD + E + P++ +GNHE D+ P+ G + +
Sbjct: 163 DLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEY--------QP 214
Query: 395 GVPAETMFYVPAENRAK---FWYSTDYGMFHFCIADTEHDWREGSEQYRFIEQCLASVDR 451
VP + P E WY+ H + + + + S QY++ L V+R
Sbjct: 215 FVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNR 274
Query: 452 RKQPWLIFAAHRVLGYSSDYWYGQEGSFEEPMGRESLQRLWQKYKVDIAFFGHVHNYERT 511
+ PWLI H L Y+S + EG E M R + + YKVDI F GHVH+YER+
Sbjct: 275 SETPWLIVLVHAPL-YNSYEAHYMEG---EAM-RAIFEPYFVYYKVDIVFSGHVHSYERS 329
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 240 RDPGFIHTSFLKNLWPNTVYTYRIGHLLHNGSYVWSKIYSFRASPYPGQDS 290
R G L NL PNT Y R+ + G +SKI F+ P G S
Sbjct: 68 RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPSS 118
>pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3KST|B Chain B, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 306
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 371 SGNHERDWPNSGSFYDTTDSGGECGVPAETMFYVPAENRAKFWYSTDYGMFHFCIADT-- 428
S + ++W G TDS G G A ++YV ++ + +YS + H C+A +
Sbjct: 54 SSDDLKNWKREGQALSATDSYGTWGFWAPEVYYVESKKKFYLFYSAEE---HICVATSTT 110
Query: 429 -EHDWREGSEQYRFIEQCLAS---VDRRKQPWLIFA 460
E +R+ +Q + E+ + + +D P+L F
Sbjct: 111 PEGPFRQEVKQPIWSEKSIDTSLFIDDDGTPYLYFV 146
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 242 PGFIHTSFLK--NLWPNTVYTYRI--GHLLHNGSYVWSKIYSFRASPYPGQDSLQRVVIF 297
P H+ ++ L PN VY YR GH L S + + P PG + Q F
Sbjct: 69 PSLAHSVHVEADGLEPNKVYYYRFKTGHEL-------SPVGKTKTLPAPGANVPQMTFAF 121
Query: 298 GDMGKAERDGSNEYSNYQPGSLNTTDQLIRDLSNIDIVFHIGDITYA---NGYISQ 350
+ Y+ G + ++ +D+VFH+GD Y N Y+S+
Sbjct: 122 ASCQQ-----------YEHGYYTAYKHMAKE--KLDLVFHLGDYIYEYGPNEYVSK 164
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 553 TPNWS-LYRDYDWGFVKLTAFNHSSL-------LFEYKKSCDGKVYDSFTISRDYRDVLA 604
PN S L RD D F H S F++ K+ DGK Y SRDY L
Sbjct: 530 VPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLI 589
Query: 605 CVHGSCEATTLAS 617
+ S +A L S
Sbjct: 590 ALRQSTDAFRLKS 602
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 553 TPNWS-LYRDYDWGFVKLTAFNHSSL-------LFEYKKSCDGKVYDSFTISRDYRDVLA 604
PN S L RD D F H S F++ K+ DGK Y SRDY L
Sbjct: 531 VPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLI 590
Query: 605 CVHGSCEATTLAS 617
+ S +A L S
Sbjct: 591 ALRQSTDAFRLKS 603
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 553 TPNWS-LYRDYDWGFVKLTAFNHSSL-------LFEYKKSCDGKVYDSFTISRDYRDVLA 604
PN S L RD D F H S F++ K+ DGK Y SRDY L
Sbjct: 837 VPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNKFDWTKATDGKAYPENVKSRDYMKGLI 896
Query: 605 CVHGSCEATTLAS 617
+ S +A L S
Sbjct: 897 ALRQSTDAFRLKS 909
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,090,699
Number of Sequences: 62578
Number of extensions: 879675
Number of successful extensions: 1746
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 15
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)