BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007134
         (616 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/613 (74%), Positives = 521/613 (84%), Gaps = 2/613 (0%)

Query: 6   MHSKQPSYEEI--SDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVH 63
           MHS Q   + +  +  P +  S   ST    E+P + +++KCI LL  CASSK K +Q+H
Sbjct: 1   MHSNQLGRQPLIPTHSPRKHFSFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIH 60

Query: 64  AFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESAN 123
           AFSIRHGVPL NPD+GKYLI+ ++S   PMSYAH IFS +Q+PNIFTWNTMIRGYAES N
Sbjct: 61  AFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESEN 120

Query: 124 PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
           P+ A+ELY +MHVS I+PDTHTYPFLLKAI+KL DVR GE+ HS+AIRNGFESLVFVQN+
Sbjct: 121 PMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNT 180

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           LVHMYAA GH + A K+FELM+ER+LV WNSVING+A NG+PNEALTLFREM   GVEPD
Sbjct: 181 LVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPD 240

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
           G+TMVSL SACAELGALALGRRAH Y+ KVGL  N++  NALLD Y+KCG I  A +VF 
Sbjct: 241 GFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD 300

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           EM +++ VSW++L+VGLAVNGFGKEALELFKE+E  G +P E+TFVGVLYACSHCGMVDE
Sbjct: 301 EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDE 360

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           GF YFKRMK+EYGI+PKIEH+GCMVDLLGRAGLVKQA+E+IQNM M PNAV+WRTLLGAC
Sbjct: 361 GFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGAC 420

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
           TIHGH A+ E+AR+ LLQLEPKHSGDYVLLSNLYA EQRW +V +VRRTM++E VKKTPG
Sbjct: 421 TIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPG 480

Query: 484 HSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKED 543
           HSLVEL NR+ EF MGDRSHPQTEEI+  LAEITK LKLEGYVP   NV ADIEEEEKE 
Sbjct: 481 HSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKET 540

Query: 544 ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFH 603
           ALSYHSEKIAIAFML+NTA G P+RVVKNLRVCADCHLAIKLISKV+ REIVVRDRSRFH
Sbjct: 541 ALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFH 600

Query: 604 HFKDGHCSCRDYW 616
           HFKDGHCSC+DYW
Sbjct: 601 HFKDGHCSCKDYW 613


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/585 (74%), Positives = 506/585 (86%), Gaps = 4/585 (0%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
            + ENP+T    KCI+LLQ CASSKHKLKQ+HAFSIRHGV LNNPD+GK+LI+ IVSLS 
Sbjct: 11  TTPENPLT----KCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSA 66

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           PMSYA+N+F+ + +PN+FTWNT+IRGYAES NP  A   Y +M VS ++PDTHTYPFLLK
Sbjct: 67  PMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLK 126

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           AISK  +VR GE  HSV IRNGFESLVFVQNSL+H+YAA G  + A KVFELM ERDLVA
Sbjct: 127 AISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVA 186

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WNS+INGFA NG+PNEALTLFREM+ EGVEPDG+T+VSL SA AELGAL LGRR H Y+ 
Sbjct: 187 WNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLL 246

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           KVGLS N +V N+LLD Y+KCG I  AQRVF EM +RNAVSW++L+VGLAVNGFG+EALE
Sbjct: 247 KVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALE 306

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LFKEME  G VP E+TFVGVLYACSHCGM+DEGF YF+RMK+E GI+P+IEH+GCMVDLL
Sbjct: 307 LFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLL 366

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            RAGLVKQAYEYIQNM + PNAVIWRTLLGACTIHGH  + EIARS LL LEPKHSGDYV
Sbjct: 367 SRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYV 426

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSNLYA E+RW +VQ +RR+M+K+ VKKTPG+SLVELGNRV+EF MGDRSHPQ+++++A
Sbjct: 427 LLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYA 486

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
           +L +IT+ LKLEGYVP T NV ADIEEEEKE ALSYHSEK+AIAFML+NT PGTP+RV+K
Sbjct: 487 LLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMK 546

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVCADCH+AIKLI+K+Y REIV+RDRSRFHHF+ G CSC+DYW
Sbjct: 547 NLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/580 (71%), Positives = 491/580 (84%), Gaps = 1/580 (0%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           ++ ++RKCI+L+Q+C SS+ KLKQ+HAFSIRHGVP  NPD  K+LI+A+VSLS PMS+A 
Sbjct: 30  LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAA 89

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKL 156
            IF+ +Q PNIFTWNTMIRG+AES NP  AVEL+S+MH  S I PDTHT+PFL KA++KL
Sbjct: 90  QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            DV +GE  HSV +RNGF+SL FVQNSLVHMY+ FG  + A +VFE+MS RD VAWNSVI
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVI 209

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           NGFA NG PNEALTL+REM SEGVEPDG+TMVSL SAC ELGALALG R H Y+ KVGL 
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            N + +NALLD YSKCG    AQ+VF EM +R+ VSW++L+VGLAVNG G EAL+LF E+
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           E  G  P E+TFVGVLYACSHCGM+DEGF+YF+RMK+EYGI+P+IEH GCMVDLL RAG 
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           V  AY+YI+NM +PPNAVIWRTLLGACTIHGH  + E+AR+ + +LE +HSGD+VLLSNL
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA E+RWL+VQ VR+ M+ + VKKTPG+SLVEL NRV+EF MGDRSHPQ+EE +AMLA+I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
           T+ LK+EGYVPRT NV ADIEEEEKE ALS+H+EK+AIAFMLVNT PGTP+R++KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ADCHLAIKLISKV+ REI+VRDRSRFHHFKDG CSC+DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/580 (70%), Positives = 490/580 (84%), Gaps = 1/580 (0%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           ++ ++RKCI+L+Q+C SS+ KLKQ+HAFSIRHGVP  NPD  K+LI+A+VSLS PMS+A 
Sbjct: 30  LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAA 89

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKL 156
            IF+ +Q PNIFTWNTMIRG+AES NP  AVEL+S+MH  S I PDTHT+PFL KA++KL
Sbjct: 90  QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            DV +GE  HSV +RNGF+SL FVQNSLVHMY+  G +  A +VFE+MS RD VAWNSVI
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVI 209

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           NGFA NG PNEALTL+REM SEGVEPDG+TMVSL SAC ELGALALG R H Y+ KVGL 
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            N + +NALLD YSKCG    AQ+VF EM +R+ VSW++L+VGLAVNG G EAL+LF E+
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           E  G  P E+TFVGVLYACSHCGM+DEGF+YF+RMK+EYGI+P+IEH GCMVDLL RAG 
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           V  AY+YI+NM +PPNAVIWRTLLGACTIHGH  + E+AR+ + +LE +HSGD+VLLSNL
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA E+RWL+VQ VR+ M+ + VKKTPG+SLVEL NRV+EF MGDRSHPQ+EE +AMLA+I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
           T+ LK+EGYVPRT NV ADIEEEEKE ALS+H+EK+AIAFMLVNT PGTP+R++KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ADCHLAIKLISKV+ REI+VRDRSRFHHFKDG CSC+DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/605 (69%), Positives = 491/605 (81%), Gaps = 26/605 (4%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           V S   +TP   E P+T    KCI LLQ CASSKHKL+ +HAFSIRHGV LNNPD+GK+L
Sbjct: 6   VTSFLSTTP---EYPLT----KCIYLLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKHL 58

Query: 83  IYAIVSLSFPMSYAHNIFSHV-----------QDPNIFTWNTMIRGYAESANPLLAVELY 131
           I+ IVSLS PMSYA+N+F+ V            +PN+FTWNTM RGYAES NP  A+  Y
Sbjct: 59  IFTIVSLSAPMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFY 118

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            +M VS I+PDTHTYPFLLKAISK  +VR GE  HSV IRNGFESLVFVQNSL+H+YAA 
Sbjct: 119 RQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC 178

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G  + A  VFELM +RDLVA  SVINGFA NG+P+EALTLFREM++EGVEPDG+T+VSL 
Sbjct: 179 GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLL 238

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SA AELGAL LGRR H Y+ KVGL +N +V N+LLD Y+KC  I   +R        NAV
Sbjct: 239 SASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXER--------NAV 290

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW++L+VGLAVNGFG+EALELF+EME  G VP E+TFVGVLYACSHCGM+DEGF YF+RM
Sbjct: 291 SWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRM 350

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
           K+E+GIMP+IEH+GCMVDLL RAGLVKQAYEYIQNM + PNAV WRTLLGACTIHGH  +
Sbjct: 351 KEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGL 410

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            E ARS LL+LEPKHSGDYVLLSNLY  E RW +VQ +RR+M+K+ VKKT G+SLVELGN
Sbjct: 411 GETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGN 470

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
           RV+EF MG+RSHPQ+++++A+L +IT+ LKLEGYVP T NV ADIEEEEKE ALSYHSEK
Sbjct: 471 RVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEK 530

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
            AIAFM +NTAPGT +RV+KNLRVCADCH+AIKL++KVY REIV+RDR RFHHF+ G CS
Sbjct: 531 XAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCS 590

Query: 612 CRDYW 616
           C+DYW
Sbjct: 591 CKDYW 595


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/582 (65%), Positives = 477/582 (81%), Gaps = 6/582 (1%)

Query: 41  VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
           +V KCI LLQ    SS  KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL  P  MSYAH
Sbjct: 14  MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73

Query: 98  NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
            +FS ++ P N+F WNT+IRGYAE  N + A  LY +M VSG ++PDTHTYPFL+KA++ 
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +ADVR+GE  HSV IR+GF SL++VQNSL+H+YA  G V  A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N++ +N LLD Y++CG +  A+ +F EM  +N+VSW++L+VGLAVNGFGKEA+ELFK 
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313

Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           ME   G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR  +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L 
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 493

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T +L+ EGYVP+  NV+ D+EEEEKE+A+ YHSEKIAIAFML++T   +P+ VVKNLR
Sbjct: 494 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 553

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/582 (65%), Positives = 473/582 (81%), Gaps = 6/582 (1%)

Query: 41  VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
           +V KCI LLQ    SS  KL+Q+HAFSIR+GV +++ +LGK+LI+ +VSL  P  MSYAH
Sbjct: 14  MVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73

Query: 98  NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
            +FS ++ P N+F WNT+IRGYAE  N + AV LY +M  SG ++PDTHTYPFLLKA+ K
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGK 133

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +ADVR+GE  HSV IR+GF SL++VQNSL+H+YA  G V  A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           INGFA NGKP EAL L+ EM  +G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGL 253

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N++ +N LLD Y++CG +  A+ +F EM  +N+VSW++L+VGLAVNG GKEA+ELFK 
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKN 313

Query: 336 MEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           ME   G +P E+TFVG+LYACSHCGMV EGF YF+RM +EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARA 373

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G VK+AYEYI  M M PN VIWRTLLGACT+HG S +AE+AR  +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLS 433

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA EQRW +VQ++R+ M+++ V+K PGHSLVE+GNRV EF MGD+SHPQ + I+A L 
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLK 493

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T +L+LEGYVP+  NV+ D+EEEEKE+AL YHSEKIAIAFML++T    P+RVVKNL+
Sbjct: 494 EMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLK 553

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/567 (64%), Positives = 463/567 (81%), Gaps = 6/567 (1%)

Query: 41  VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
           +V KCI LLQ    SS  KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL  P  MSYAH
Sbjct: 14  MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73

Query: 98  NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
            +FS ++ P N+F WNT+IRGYAE  N + A  LY +M VSG ++PDTHTYPFL+KA++ 
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +ADVR+GE  HSV IR+GF SL++VQNSL+H+YA  G V  A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N++ +N LLD Y++CG +  A+ +F EM  +N+VSW++L+VGLAVNGFGKEA+ELFK 
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313

Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           ME   G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR  +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L 
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 493

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T +L+ EGYVP+  NV+ D+EEEEKE+A+ YHSEKIAIAFML++T   +P+ VVKNLR
Sbjct: 494 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 553

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSR 601
           VCADCHLAIKL+SKVY+REIVVRDRSR
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/453 (77%), Positives = 397/453 (87%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           + +AI+KL DVR GE+ HS+AIRNGFESLVFVQN+LVHMYAA GH + A K+FELM+ER+
Sbjct: 1   MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           LV WNSVING+A NG+PNEALTLFREM   GVEPDG+TMVSL SACAELGALALGRRAH 
Sbjct: 61  LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           Y+ KVGL  N++  NALLD Y+KCG I  A +VF EM +++ VSW++L+VGLAVNGFGKE
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 180

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           ALELFKE+E  G +P E+TFVGVLYACSHCGMVDEGF YFKRMK+EYGI+PKIEH+GCMV
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 240

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAGLVKQA+E+IQNM M PNAV+WRTLLGACTIHGH A+ E+AR+ LLQLEPKHSG
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 300

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
           DYVLLSNLYA EQRW +V +VRRTM++E VKKTPGHSLVEL NR+ EF MGDRSHPQTEE
Sbjct: 301 DYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEE 360

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I+  LAEITK LKLEGYVP   NV ADIEEEEKE ALSYHSEKIAIAFML+NTA G P+R
Sbjct: 361 IYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIR 420

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           VVKNLRVCADCHLAIKLISKV+ REIVVRDRSR
Sbjct: 421 VVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 20/275 (7%)

Query: 60  KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           ++VH+ +IR+G    V + N      L++   +     S AH +F  + + N+ TWN++I
Sbjct: 15  EKVHSIAIRNGFESLVFVQN-----TLVHMYAACGHAES-AHKLFELMAERNLVTWNSVI 68

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GYA +  P  A+ L+ +M + G++PD  T   LL A ++L  + +G + H   ++ G +
Sbjct: 69  NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 128

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             +   N+L+ +YA  G ++ A KVF+ M E+ +V+W S+I G A NG   EAL LF+E+
Sbjct: 129 GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKEL 188

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALG-----RRAHTYVWKVGLSDNVNVNNALLDFYS 290
             +G+ P   T V +  AC+  G +  G     R    Y    G+   +     ++D   
Sbjct: 189 ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEY----GIVPKIEHYGCMVDLLG 244

Query: 291 KCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           + G++  A    + M  + NAV W TL+    ++G
Sbjct: 245 RAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 279


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/586 (56%), Positives = 436/586 (74%), Gaps = 16/586 (2%)

Query: 42  VRKCITLLQV--CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL-SFPMSYAHN 98
           +R C+ LL++   A S    KQ+HA ++R GVP ++P L K+L++ + +L + P+ YA  
Sbjct: 12  LRHCVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVA 71

Query: 99  IFSHVQ-----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           + S +      DP  F  NT++R  A S  P +A+EL+ +       PDTHTYP L++A 
Sbjct: 72  VLSRLLPHGPLDP--FPLNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQAC 126

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVA 211
           ++L  +R GE  H+ A +NGF +LVFVQNSLVH+Y A G  + A KVF+ M    R+LV+
Sbjct: 127 ARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVS 186

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WNS++N FA+NG+PNE LT+F EM      PDG+T+VS+ +ACAE GALALGRR H YV 
Sbjct: 187 WNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVE 246

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEAL 330
           KVGL +N +V+NAL+D Y+KCG +  A+R+F EM   R  VSW++L+VGLA NGFGKEAL
Sbjct: 247 KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEAL 306

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ELF  ME    VP E+T VGVLYACSHCG+VD+GF YF RMK++YGI P+IEH GCMVDL
Sbjct: 307 ELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDL 366

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGRAG V++AY+YI  M + PNAV+WRTLLG+C +H    + ++A   L++L+P HSGDY
Sbjct: 367 LGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDY 426

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSNLYA    W +V  +R+TMVK+RV+K PGHSLVEL N V+EF MGDRSHP++E+I+
Sbjct: 427 VLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIY 486

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            MLAEI ++L+ EGY+PRT NV ADIEEEEKE AL+YHSE++AIAF L+ + PG P+R++
Sbjct: 487 EMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRII 546

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR+C DCH+A  LISKVY REI+VRDRSRFHHF+ G CSC+DYW
Sbjct: 547 KNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/462 (67%), Positives = 387/462 (83%), Gaps = 1/462 (0%)

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +ADVR+GE  HSV IR+GF SL++VQNSL+H+YA  G V  A KVF+ M E+DLVAWNSV
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N++ +N LLD Y++CG +  A+ +F EM  +N+VSW++L+VGLAVNGFGKEA+ELFK 
Sbjct: 121 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 180

Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           ME   G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 181 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 240

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR  +LQLEP HSGDYVLLS
Sbjct: 241 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 300

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L 
Sbjct: 301 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 360

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T +L+ EGYVP+  NV+ D+EEEEKE+A+ YHSEKIAIAFML++T   +P+ VVKNLR
Sbjct: 361 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 420

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 421 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 14/268 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A+ +F  + + ++  WN++I G+AE+  P  A+ LY++M+  GIKPD  T   LL A +K
Sbjct: 42  AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 101

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  + +G++ H   I+ G    +   N L+ +YA  G V++A  +F+ M +++ V+W S+
Sbjct: 102 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 161

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALG----RRAHTYV 270
           I G A NG   EA+ LF+ M S EG+ P   T V +  AC+  G +  G    RR     
Sbjct: 162 IVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-- 219

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEA 329
            +  +   +     ++D  ++ G +  A    + M  + N V W TL+    V+  G   
Sbjct: 220 -EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVH--GDSD 276

Query: 330 LELFKEMEIGGFVP---GEVTFVGVLYA 354
           L  F  ++I    P   G+   +  +YA
Sbjct: 277 LAEFARIQILQLEPNHSGDYVLLSNMYA 304


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/594 (55%), Positives = 440/594 (74%), Gaps = 12/594 (2%)

Query: 32  ASQENPITSVVRKCITLLQV--CASSKHKLKQVHAFSIRH--GVPLNNPDLGKYLIYAIV 87
           A   +P  + +R C+ LL++   + S    KQ+HA ++R   GV  ++P L K+L++ + 
Sbjct: 8   APCTHPAAAALRHCVALLRLHLASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLA 67

Query: 88  SL-SFPMSYAHNIFSHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           +L + P+ YA  + S +   P+ F+ NT++R +A SA P +A+ L+ + H++   PDTHT
Sbjct: 68  ALKAPPLRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRR-HLA--PPDTHT 124

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           YP LL+A ++L  +R GE  H+ A +NG  SLVFV+NSLVH+Y A G  + A +VF+ + 
Sbjct: 125 YPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIP 184

Query: 206 --ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
             ER+LV+WNSV+NGFA+NG+PNE LT+FREM      PDG+T+VS+ +ACAE+G LALG
Sbjct: 185 PPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALG 244

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAV 322
           RR H +V KVGL  N +  NAL+D Y+KCG +  A+++F EM   R  VSW++L+VGLAV
Sbjct: 245 RRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAV 304

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NGFG +AL+LF  ME    +P E+T VGVLYACSHCG+VD+GF YF +MK EYGI P+IE
Sbjct: 305 NGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIE 364

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H GCMVDLLGRAG V++A+ YI  M + PNAV+WRTLLGAC +H    I E A + L++L
Sbjct: 365 HLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVEL 424

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +P HSGDYVLLSNLYA   RW +V  +R+TMV   V+K PGHSLVEL N V+EF MGDRS
Sbjct: 425 DPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRS 484

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HP+T++I+ ML +I ++L+ +GY+P T NV ADIE+EEKE AL+YHSE++AIAF L+ + 
Sbjct: 485 HPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSL 544

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           PGTP+R+VKNLRVC DCH+AIKLISKVY REI+VRDRSRFHHFK G CSC+DYW
Sbjct: 545 PGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/558 (57%), Positives = 419/558 (75%), Gaps = 14/558 (2%)

Query: 68   RHGVPLNNPDLGKYLIYAIVSL-SFPMSYAHNIFSHVQ-----DPNIFTWNTMIRGYAES 121
            R GVP ++P L K+L++ + +L + P+ YA  + S +      DP  F  NT++R  A S
Sbjct: 728  RAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDP--FPLNTVLRIAAGS 785

Query: 122  ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
              P +A+EL+ +       PDTHTYP L++A ++L  +R GE  H+ A +NGF +LVFVQ
Sbjct: 786  PRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQ 842

Query: 182  NSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            NSLVH+Y A G  + A KVF+ M    R+LV+WNS++N FA+NG+PNE LT+F EM    
Sbjct: 843  NSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD 902

Query: 240  VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
              PDG+T+VS+ +ACAE GALALGRR H YV KVGL +N +V+NAL+D Y+KCG +  A+
Sbjct: 903  FAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDAR 962

Query: 300  RVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            R+F EM   R  VSW++L+VGLA NGFGKEALELF  ME    VP E+T VGVLYACSHC
Sbjct: 963  RIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHC 1022

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            G+VD+GF YF RMK++YGI P+IEH GCMVDLLGRAG V++AY+YI  M + PNAV+WRT
Sbjct: 1023 GLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRT 1082

Query: 419  LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
            LLG+C +H    + ++A   L++L+P HSGDYVLLSNLYA    W +V  +R+TMVK+RV
Sbjct: 1083 LLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRV 1142

Query: 479  KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            +K PGHSLVEL N V+EF MGDRSHP++E+I+ MLAEI ++L+ EGY+PRT NV ADIEE
Sbjct: 1143 RKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEE 1202

Query: 539  EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            EEKE AL+YHSE++AIAF L+ + PG P+R++KNLR+C DCH+A  LISKVY REI+VRD
Sbjct: 1203 EEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRD 1262

Query: 599  RSRFHHFKDGHCSCRDYW 616
            RSRFHHF+ G CSC+DYW
Sbjct: 1263 RSRFHHFQGGACSCKDYW 1280


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/597 (55%), Positives = 434/597 (72%), Gaps = 16/597 (2%)

Query: 30  TPASQENPITSVVRKCITLLQV--CASSKHKLKQVHAFSIRH-GVPLNNPDLGKYLIYAI 86
            PA   +P    +R C+ LL++   + S    KQ+HA ++R  GVPL++P L K+L++ +
Sbjct: 6   APAPSTHP---ALRHCVALLRLHLPSPSVAAAKQIHARALRAAGVPLSHPLLAKHLLFHL 62

Query: 87  VSLSF---PMSYAHNIFS-HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
            SL     P+ YA  + S  + DP+ F+ NT++R  A SA+P +A+ L+ +       PD
Sbjct: 63  ASLRAGPPPLLYAVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLA---PPD 119

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
           THTYP LL+A ++L  +R GE  H+ A +NG  +LVFV+NSLVH Y A G  + A +VF+
Sbjct: 120 THTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFD 179

Query: 203 LMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
            +   ER+LV+WNSV+NGFA+NG+PNE LT+FRE     + PDG+T+VS+ +ACAE+GAL
Sbjct: 180 EIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGAL 239

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVG 319
            LGRR H +  KVGL  N +V NAL+D Y+KCG +  A +VF EM   R  VSW++L+VG
Sbjct: 240 TLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVG 299

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           LA NGFGK+ALELF  ME    +P ++T VGVLYACSHCG+VD+GF YF  M+D+YGI P
Sbjct: 300 LAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAP 359

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            IEH GCMVDLLGRAG V++A+ YI  M + PNAV+WRTLLGAC +H    + E A + L
Sbjct: 360 GIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARL 419

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           ++L+P HSGDYVLLSNLYA   RW +   +R+TM    V+K PGHSLVEL N V+EF MG
Sbjct: 420 VELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMG 479

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           DRSHP++++I+  LAEI ++L+ +GYVPRT NV ADIEEEEKE AL+YHSE++AIAF L+
Sbjct: 480 DRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALL 539

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            + PG+P+R+VKNLR+C DCHL IKLISKVY REI+VRDRSRFHHFK G CSC+DYW
Sbjct: 540 KSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/426 (73%), Positives = 362/426 (84%), Gaps = 1/426 (0%)

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
            + + A KVFELM E+D+VAWNSVINGFA NGKPNEALTL++ M SEGVEPDG+TMVSL 
Sbjct: 55  AYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLL 114

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNA 310
           SACAEL  L LGRRAH Y+ KVGL+ N++ NNALLD Y+KCG I  A+++F EM  +RN 
Sbjct: 115 SACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNV 174

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW++L+VGLAVNGFGKEALE FK+ME  G VP E+TFVGVLYACSHCG+V+EGF YFKR
Sbjct: 175 VSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKR 234

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           MK++Y I+P+IEH+GCMVDLLGRAGL+K+AY+YIQ+M + PNAVIWRTLLGACTIHGH  
Sbjct: 235 MKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLG 294

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           +   AR+ LLQLEPK SGDYVLLSNLYA EQRW +V EVRRTM+ E V+KTPG+SLVELG
Sbjct: 295 LGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELG 354

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
           N V EF MGDR+HPQ+E I+ ML E+  KLKL GYVP T NV ADIEEEEKE AL YHSE
Sbjct: 355 NHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSE 414

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           KIAIAFML+NT PGTP+R++KNLRVCADCH AIKLISKV+ R+IVVRD SRFHHF+DG C
Sbjct: 415 KIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSC 474

Query: 611 SCRDYW 616
           SCRDYW
Sbjct: 475 SCRDYW 480



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 134/267 (50%), Gaps = 12/267 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A+ +F  + + +I  WN++I G+A +  P  A+ LY +M   G++PD  T   LL A ++
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNS 214
           LA + +G + H   ++ G    +   N+L+ +YA  G + +A K+F+ M  ER++V+W S
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-----RRAHTY 269
           +I G A NG   EAL  F++M  EG+ P   T V +  AC+  G +  G     R    Y
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY 239

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG-FGK 327
                +   +     ++D   + G++  A    ++M  + NAV W TL+    ++G  G 
Sbjct: 240 ----DIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGL 295

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYA 354
            A    + +++     G+   +  LYA
Sbjct: 296 GAFARARLLQLEPKDSGDYVLLSNLYA 322


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 309/552 (55%), Positives = 408/552 (73%), Gaps = 11/552 (1%)

Query: 32  ASQENPIT-SVVRKCITLLQV--CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           A    P T   +R C+ LL++   A S   +KQ+HA ++R GVP  +P L K+L++ + S
Sbjct: 5   AGGRTPSTHPALRHCVALLRLHLAAPSLATVKQLHARALRAGVPPAHPLLAKHLLFHLAS 64

Query: 89  L-SFPMSYAHNIFSHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           L + P+ YA  + + V  DP+ F+ NT++R  A S+ P LA+ L+++       PDTHTY
Sbjct: 65  LRAPPLRYAVAVLTRVLPDPDPFSLNTVLRIAASSSRPSLALALHARRLAP---PDTHTY 121

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM-- 204
           P LL+A ++L  +R GE+ H+ A +NG  +LVFV+NSLVH+Y A G  + A +VF+ +  
Sbjct: 122 PPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPV 181

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
            ER+LV+WNS++NGFA+NG+PNE LT+FREM      PDG+T+VS+ +A AE+GALALGR
Sbjct: 182 GERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGR 241

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVN 323
           R H Y+ KVGL +N +V NAL+D Y+KCG +  A+RVF EM  +R  VSW++L+VGLAVN
Sbjct: 242 RVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVN 301

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           GFGKEALELF  ME    VP E+T VGVLYACSHCG+VD+GF YF RMK+EY I P+IEH
Sbjct: 302 GFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEH 361

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
            GCMVDLLGRAG VK+AY+YI  M + PNAV+WRTLLGAC +H    + E A + L++L+
Sbjct: 362 LGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELD 421

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P HSGDYVLLSNLYA   RW +V  +R+TMVK+ V+K PG SLVEL N V+EF MGDRSH
Sbjct: 422 PGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVELRNSVYEFVMGDRSH 481

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P++E+I+ MLAE+   L+ EGY+PRT NV ADIEEEEKE AL+YHSE++AIAF L+ + P
Sbjct: 482 PESEQIYQMLAEVADSLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP 541

Query: 564 GTPVRVVKNLRV 575
           GTP+R+VKNLR+
Sbjct: 542 GTPIRIVKNLRL 553


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/637 (42%), Positives = 393/637 (61%), Gaps = 53/637 (8%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           S   SQ +P+T      ++L + C S  H LKQ+H+ +I+ G+ + NP +   ++    S
Sbjct: 3   SMACSQSSPVTE--NPPLSLFETCKSMYH-LKQIHSRTIKTGI-ICNPIIQNKILSFCCS 58

Query: 89  LSF-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
             F  M YA  +F  + +P++F+WN M +GY+  A P L V LY +M    +KPD +TYP
Sbjct: 59  REFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYP 118

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           FL K  ++   +++G + H   ++ G +S VF  N+L++MY+  G +  A  +F++  + 
Sbjct: 119 FLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKS 178

Query: 208 DLVAWNSVING-----------------FASNGKPN------------------------ 226
           D+V WN++I+G                 F + G+ +                        
Sbjct: 179 DVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGY 238

Query: 227 -------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                  EAL LFREM +  ++PD +TMVS+ +ACA+LGAL LG    TY+ K  + ++ 
Sbjct: 239 LRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDT 298

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NAL+D Y KCG +  A  +F  + +R+  +W+ +VVGLA+NG G+EAL +F +M   
Sbjct: 299 FVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKA 358

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
              P EVT+VGVL AC+H GMVDEG  +F  M   +GI P I H+GCMVDLLG+AG +K+
Sbjct: 359 SVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKE 418

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A+E I+NM M PN+++W  LLGAC IH  + +AE A   +L+LEP +   YVL  N+YA 
Sbjct: 419 AHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAA 478

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W  ++E+R+ M+   +KKTPG SL+E+   V EF  GD+SHPQT+EI+  L ++T  
Sbjct: 479 CNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSD 538

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           LK+ GY P T  VF DI EE+KE+A+  HSEK+AIAF L+N+ PG  +R+VKNLR+C DC
Sbjct: 539 LKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDC 598

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H   KL+SKVY RE++VRDR+RFHHF+ G CSC+DYW
Sbjct: 599 HHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/582 (46%), Positives = 386/582 (66%), Gaps = 8/582 (1%)

Query: 40  SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           +V + C+ +LQ C ++  KL Q+H   I+ G   NNP +      A  +L   + YA ++
Sbjct: 5   AVEQPCLDILQAC-NTLPKLAQLHTHIIKLGFQ-NNPLVLTKFTSASSNLD-AIPYAMSL 61

Query: 100 FSHVQDPNI---FTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISK 155
              V+D  +   F ++T+IR YAES+     A+  Y+ M   GI P+ + +PF+LKA + 
Sbjct: 62  VFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAG 121

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-GHVKDACKVFELMSERDLVAWNS 214
           L D+ +G+  H   ++ GF+  +FVQN++VHMY    G ++ A K+F+ M + D V W +
Sbjct: 122 LRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTA 181

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I G+A  G+   A+ LFR+M   GV PD  TMVS+ SAC +LGAL LG+   +Y+ K  
Sbjct: 182 MIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER 241

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +   V ++NAL+D ++KCG +  A  +FR M KR  VSW++++VGLA++G G EA+ LF+
Sbjct: 242 VLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFE 301

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM+  G VP ++ F+G+L ACSH G+V+ G  YF  M  ++GI+PKIEH+GCMVDLL RA
Sbjct: 302 EMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRA 361

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           GLV +A E+++ M + PN +IWRTL+ AC +HG   + E     L++ EP H  +YVLLS
Sbjct: 362 GLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLS 421

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+Y     W    ++R  M K+ ++K PG +++EL N + EF +GDRSH Q  EI  M+ 
Sbjct: 422 NIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVN 481

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+ +++K  GY P T  VF DI+EE+KEDALS HSEK+AIAF L+NT PG+P+R+ KNLR
Sbjct: 482 EMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLR 541

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH A K ISK+Y+REIV+RDRSRFHHF+DG CSC D+W
Sbjct: 542 VCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/600 (45%), Positives = 374/600 (62%), Gaps = 33/600 (5%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI 108
           L  C + K  L Q+HA +I  G+  +N    + L +A +S    + YA  +F  ++ P+I
Sbjct: 42  LSSCKTLK-DLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDI 100

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHS 167
           F  NT+IR YA S NP+ AV  YS+M  S +  PD HT+P LLKA S++  +R+GE  HS
Sbjct: 101 FIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHS 160

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHV-------------------------------KD 196
              + G+ S V V N LV MYA+ G +                               K 
Sbjct: 161 HVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKS 220

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A ++FE M +RD+V+W+ +ING+    +  E L LF++M  E +EP+   +V+  SACA 
Sbjct: 221 ARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAH 280

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGA+  G+    Y+ +  +   V +  AL+D YSKCG +  A  VF +M+++N ++WS +
Sbjct: 281 LGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAM 340

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + GLA+NG GK+AL LF +ME+ G  P EVTF+G+L ACSH  +VDEG S+F  M   YG
Sbjct: 341 INGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYG 400

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           + P   H  CMVDL GRAG++ QA   I++M   PN+ IW  LL AC IHG + + E   
Sbjct: 401 LKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVG 460

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEF 496
             LL+L+P H G YVLLSN+YA   RW  V E+RR M + +V KTPG S ++LG+ + EF
Sbjct: 461 KRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEF 520

Query: 497 FMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF 556
             GD SHPQ E I+A L E++++LK  GY P T  V  D++EEEKE AL +HSEK+AIAF
Sbjct: 521 VAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAF 580

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L+ T PGT +R+ KNLRVCADCH A KLISK+Y+REI+VRDR RFHHF+DG CSC D+W
Sbjct: 581 GLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/601 (44%), Positives = 383/601 (63%), Gaps = 34/601 (5%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAI--VSLSFPMSYAHNIFSHVQDP 106
           L+ C+   H LK +HA+ IR  +  +     + + + +   S +  + YA  IFS +Q+P
Sbjct: 24  LETCSDLTH-LKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNP 82

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+F +N MIRG++ S NP  A   Y +    G+ PD  T+PFL+K+ +KL  + MG Q H
Sbjct: 83  NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAH 142

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGH-------------------------------VK 195
              I++GFE  V+VQNSLVHMYA FG                                V+
Sbjct: 143 GHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVE 202

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
            A K+F+ M E++LV W+++I+G+A N   ++A+ LF+ + S+GV  +   MVS+ S+CA
Sbjct: 203 SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCA 262

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
            LGAL LG RAH YV K G++ N+ +  AL+D Y++CG I  A  VF ++ +R+ +SW+ 
Sbjct: 263 HLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTA 322

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           L+ GLA++G+ + +L+ F  M   G  P ++TF  VL ACSH G+V+ GF  F+ MK ++
Sbjct: 323 LIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDH 382

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
            + P++EH+GCMVDLLGRAG +++A  ++  M + PNA +W  LLGAC IH ++ I E  
Sbjct: 383 RVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERV 442

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
              L+QL P+HSG YVLLSN+YA  + W  V E+R+ M  + +KK PGHSL+EL  RV +
Sbjct: 443 GKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHK 502

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIA 555
           F +GD SHP+ ++I  M  EI  +++  GY   T +   DI+EEEKE AL  HSEK+AIA
Sbjct: 503 FTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIA 562

Query: 556 FMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           F ++ +  GTP+R+VKNLRVC DCH A KLISKV+ RE++VRDR+RFHHF+ G CSC DY
Sbjct: 563 FGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDY 622

Query: 616 W 616
           W
Sbjct: 623 W 623


>gi|3377941|emb|CAA17526.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1331

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 243/363 (66%), Positives = 306/363 (84%), Gaps = 1/363 (0%)

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           ++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL+ N++ +N LLD Y++CG +  A+
Sbjct: 1   IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 60

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME-IGGFVPGEVTFVGVLYACSHC 358
            +F EM  +N+VSW++L+VGLAVNGFGKEA+ELFK ME   G +P E+TFVG+LYACSHC
Sbjct: 61  TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 120

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           GMV EGF YF+RM++EY I P+IEHFGCMVDLL RAG VK+AYEYI++M M PN VIWRT
Sbjct: 121 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 180

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGACT+HG S +AE AR  +LQLEP HSGDYVLLSN+YA EQRW +VQ++R+ M+++ V
Sbjct: 181 LLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV 240

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L E+T +L+ EGYVP+  NV+ D+EE
Sbjct: 241 KKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 300

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEKE+A+ YHSEKIAIAFML++T   +P+ VVKNLRVCADCHLAIKL+SKVY+REIVVRD
Sbjct: 301 EEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 360

Query: 599 RSR 601
           RSR
Sbjct: 361 RSR 363



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           IKPD  T   LL A +K+  + +G++ H   I+ G    +   N L+ +YA  G V++A 
Sbjct: 1   IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 60

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAEL 257
            +F+ M +++ V+W S+I G A NG   EA+ LF+ M S EG+ P   T V +  AC+  
Sbjct: 61  TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 120

Query: 258 GALALG----RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVS 312
           G +  G    RR      +  +   +     ++D  ++ G +  A    + M  + N V 
Sbjct: 121 GMVKEGFEYFRRMRE---EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVI 177

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTFVGVLYA 354
           W TL+    V+  G   L  F  ++I    P   G+   +  +YA
Sbjct: 178 WRTLLGACTVH--GDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 220


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/573 (46%), Positives = 381/573 (66%), Gaps = 3/573 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY-AIVSLSFPMSYAHNIFSHVQ 104
           ++LL  C S + +LKQ+ AF+I+  +  +   L K++ + ++   +  M +AH++F  + 
Sbjct: 24  LSLLPKCTSLR-ELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIP 82

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            P+I  +NTM RGYA +  PL A  L++++  SG+ PD +T+P LLKA +    +  G Q
Sbjct: 83  QPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQ 142

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H +AI+ G    V+V  +L++MY A   +  A +VF+ + E  +V +N++I G+A   +
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           PNEAL+LFRE+ +  ++P   TM+S+ S+CA LGAL LG+  H YV K G +  V V+ A
Sbjct: 203 PNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTA 262

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG +  A  VF  M  R+  +WS +++  A++G G +A+ LFKEM   G  P 
Sbjct: 263 LIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPD 322

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E+TF+G+LYACSH G+V+EGF YF  M+D+YG++P I+H+GCMVDLLGRAG +++AYE+I
Sbjct: 323 EITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFI 382

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             + + P  ++WRTLL AC  HG+  + +     + +L+  H GDY++LSNL A   RW 
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWE 442

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +V  VR+ M +  V K PG S VE+ N V EFF GD  H  + ++H  L E+ K+LKL G
Sbjct: 443 DVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVG 502

Query: 525 YVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           YVP T  VF AD+E+EEKE  L YHSEK+AI F L+NT PGT +RVVKNLRVC DCH A 
Sbjct: 503 YVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAA 562

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLIS ++ R+I++RD  RFHHFKDG CSC DYW
Sbjct: 563 KLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/588 (45%), Positives = 381/588 (64%), Gaps = 10/588 (1%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS--L 89
           A+ E P +S+    ++L+  C S + +LKQ+ A++I+     NNP +   LI    S   
Sbjct: 29  AALEPPSSSI----LSLIPKCTSLR-ELKQIQAYTIK--THQNNPTVLTKLINFCTSNPT 81

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              M +AH +F  +  P+I  +NTM RGYA   +PL A+ L S++  SG+ PD +T+  L
Sbjct: 82  IASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSL 141

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA ++L  +  G+Q H +A++ G    ++V  +L++MY A   V  A +VF+ + E  +
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           VA+N++I   A N +PNEAL LFRE+   G++P   TM+   S+CA LGAL LGR  H Y
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEY 261

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V K G    V VN AL+D Y+KCG +  A  VF++M +R+  +WS ++V  A +G G +A
Sbjct: 262 VKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQA 321

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + + +EM+     P E+TF+G+LYACSH G+V+EG+ YF  M  EYGI+P I+H+GCM+D
Sbjct: 322 ISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMID 381

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG +++A ++I  + + P  ++WRTLL +C+ HG+  +A++    + +L+  H GD
Sbjct: 382 LLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGD 441

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YV+LSNL A   RW +V  +R+ MV +   K PG S +E+ N V EFF GD  H  +  +
Sbjct: 442 YVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTIL 501

Query: 510 HAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           H  L E+ K+LKL GYVP T  VF ADIE+EEKE  L YHSEK+AI + L+NT PGT +R
Sbjct: 502 HHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIR 561

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VVKNLRVC DCH A K IS ++ R+I++RD  RFHHFKDG CSC DYW
Sbjct: 562 VVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/605 (43%), Positives = 381/605 (62%), Gaps = 40/605 (6%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSH 102
           ++ L+ C +  H LK +HA  IR     +      +    ++S+S     + YA  +F  
Sbjct: 19  LSFLESCTTLSH-LKIIHAHLIRAHTIFD-----VFAASCLISISINKNLLDYAAQVFYQ 72

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           +Q+PN+F +N+ IRG++ S +P  +   Y +   +G+ PD  TYPFL+KA ++   + MG
Sbjct: 73  IQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMG 132

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC------------------------ 198
            Q H   IR+GF+S V+VQNSLV MY+  G +K A                         
Sbjct: 133 IQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192

Query: 199 -------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
                  K+F+ M E++LV W+ +I+G+A N   ++A+ L+  + SEGV  +   MVS+ 
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           ++CA LGAL LG RAH Y+ +  ++ N+ +  AL+D Y++CG I  A  VF ++  R+A+
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW+TL+ G A++G+ ++ALE F  ME  G  P E+TF  VL ACSH G+V+ G   F+ M
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
           K +Y I P++EH+GCMVDLLGRAG + +A +++  M M PNA IW  LLGAC IH +S I
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
           AE A  TL++L+P+HSG YVLLSN+YA   +W NV+ +R+ M +  V K PG++L E+  
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
           +V +F +GD++HP+ ++I  M  EI  K++L GY    ++   DI+EEEKE  +  HSEK
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEK 552

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +AIA+ ++ T    P+R+VKNLRVC DCH A KLISKVY RE++VRDR+RFHHFK G CS
Sbjct: 553 LAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACS 612

Query: 612 CRDYW 616
           C DYW
Sbjct: 613 CMDYW 617


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/596 (44%), Positives = 377/596 (63%), Gaps = 20/596 (3%)

Query: 36  NPITSVVRKCI-TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL--------IYAI 86
            P T +  + I TLL    ++  KL Q+HAF ++ G+  N   L K+         I+  
Sbjct: 10  TPKTRLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYA 69

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES----ANPLLAVELYSKMHVSGIKPD 142
            S  FP S  H   +     + F +NT+IR Y+++    +N  L    Y  M   G+ P+
Sbjct: 70  TSFLFPPS--HTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFL---FYRTMLRYGVTPN 124

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH--VKDACKV 200
             T+PF+LK  + +  +R+G+  H   ++ GFE  V V N+L+HMY   G    + A KV
Sbjct: 125 KFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKV 184

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+   + D V W+++I GF   G  + A+ LFREM   GV PD  TMVS+ SACA+LGAL
Sbjct: 185 FDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGAL 244

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            LG+   +YV K  +  +V + NAL+D ++KCG +  A ++FR+M  R  VSW++++ GL
Sbjct: 245 ELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGL 304

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           A++G G +A+ LF EM   G  P +V F+GVL ACSH G+VD+G  YF  M+  + I+PK
Sbjct: 305 AMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPK 364

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           +EH+GCMVDLL R G VK+A+E++Q M   PN +IWRT++ AC   G   + E     L+
Sbjct: 365 VEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELI 424

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           + EP H  +YVLLSN+YA  ++W    +VR  M    +KK PG +++E+ N ++EF  GD
Sbjct: 425 KSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGD 484

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
           +SH Q +EI+ M+ E+ +++K  GYVP T  V  DI+EE+KEDAL  HSEK+AIAF L+N
Sbjct: 485 KSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLN 544

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T PGT +R+VKNLRVC DCH A K ISKVY+REIVVRDR+RFHHFK+G CSCRD+W
Sbjct: 545 TPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/588 (42%), Positives = 388/588 (65%), Gaps = 10/588 (1%)

Query: 34  QENPITSVVRKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           Q N I       ++++ VCA   +  + KQ+H ++IR G+     +    ++  +V++  
Sbjct: 213 QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGI-----ESDVLVVNGLVNMYA 267

Query: 92  P---MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
               ++ AH +F  +   ++ +WN +I GY+ ++    A+  +++M V GIKP++ T   
Sbjct: 268 KCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVS 327

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L A + L  +  G+Q H  AIR+GFES   V N+LV+MYA  G+V  A K+FE M +++
Sbjct: 328 VLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKN 387

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +VAWN++I+G++ +G P+EAL LF EM ++G++PD + +VS+  ACA   AL  G++ H 
Sbjct: 388 VVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHG 447

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           Y  + G   NV V   L+D Y+KCG +  AQ++F  M +++ VSW+T+++   ++G G++
Sbjct: 448 YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGED 507

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL LF +M+  G     + F  +L ACSH G+VD+G  YF+ MK +YG+ PK+EH+ C+V
Sbjct: 508 ALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLV 567

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAG + +A   I+NM + P+A +W  LLGAC IH +  + E A   L +L+P ++G
Sbjct: 568 DLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAG 627

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
            YVLLSN+YA  QRW +V ++R+ M ++ VKK PG S+V +   V  F +GDR+HPQ+E+
Sbjct: 628 YYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQ 687

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I+AML  + ++++  GYVP T     D+EEE KE+ LS HSEK+AI+F ++NT+PG P+R
Sbjct: 688 IYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIR 747

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++KNLRVC+DCH A K ISK+  REI+VRD +RFHH K+G CSC DYW
Sbjct: 748 IMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 175/326 (53%), Gaps = 10/326 (3%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N   W   I GY ++     A+ LY +M  +GI PD   +  ++KA    +D++ G + H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
              I  GFES V V  +L  MY   G +++A +VF+ M +RD+V+WN++I G++ NG+P 
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           EAL LF EM   G++P+  T+VS+   CA L AL  G++ H Y  + G+  +V V N L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           + Y+KCG +  A ++F  M  R+  SW+ ++ G ++N    EAL  F  M++ G  P  +
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH----FGCMVDLLGRAGLVKQAYE 402
           T V VL AC+H   +++G     +    Y I    E        +V++  + G V  AY+
Sbjct: 324 TMVSVLPACAHLFALEQG-----QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGH 428
             + M    N V W  ++   + HGH
Sbjct: 379 LFERM-PKKNVVAWNAIISGYSQHGH 403



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + NAV W   ++G   NGF  +AL L+ +M+  G  P ++ F+ V+ AC
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC 130


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/586 (43%), Positives = 380/586 (64%), Gaps = 8/586 (1%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           P   +  + + +++C  +          LK + A  +R  +  +     K +  + V+LS
Sbjct: 3   PMLDQGSLVAAIKRCTRV--------GDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLS 54

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             ++YAH IFS    PN+F WNT+IRGY+ S +P+ A+ LY  M + GI P+++T+ F+L
Sbjct: 55  GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           KA  KL  +  G++ HS  ++ G +    + N L+ +YAA G +  AC +F+ M E D  
Sbjct: 115 KACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSA 174

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +W+++++G+A NG+  EAL LFREM +E V  D +T+ S+   C +LGAL LG+  H+Y+
Sbjct: 175 SWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYM 234

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K G+  +V +  AL+  YSKCG +  A +VF+ M +R+  +WST++ G A++G G++AL
Sbjct: 235 DKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKAL 294

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +LF  M+    +P  VTF  VL ACSH G+V++G   F+ M  EY I P+I+H+GCMVDL
Sbjct: 295 QLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDL 354

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
             RAG+V  A+++IQ M + PN V+WRTLLGAC  HG+  + E     +L+L+P    +Y
Sbjct: 355 FCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENY 414

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VL+SN+YA   RW +V +VR  M  +  KK  G S +E+   V +F MGD SHP+ E+I+
Sbjct: 415 VLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIY 474

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML ++ +KLK  G+V  T +V  DI+EEEKE AL  HSE++AIA+ L++T  G+P+R+V
Sbjct: 475 GMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIV 534

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH  IKLIS+VY+REI+VRDR RFHHF++  CSC DYW
Sbjct: 535 KNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/592 (45%), Positives = 385/592 (65%), Gaps = 12/592 (2%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSL 89
           P+S+   + SV       L+   +S  K KQ HA  +R  + L+NP     LI +  +S 
Sbjct: 4   PSSKCTKLISV-----DFLKTHCTSISKTKQAHALLLRTHL-LHNPLFSSKLISFLALSH 57

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  ++YA  +F+ +Q+P+ F  NTMIRGYA S NP  AV LY  M   G+  D +TYPF+
Sbjct: 58  SGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFV 117

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A ++L  V++G + H   ++NGF S +FV N+L+  Y   G    AC VF+  + RD+
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 210 VAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           V WN +IN   + G   +A  L  EM   + + PD  TMVSL  ACA+LG L  G+  H+
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 269 Y---VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
           Y   + K  ++ ++ +  AL+D Y+KCG I  A +VFR MR RN  +W+ L+ GLA++G 
Sbjct: 238 YSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGH 297

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G++A+ LF +ME    +P +VTF+ +L ACSH G+VDEG + F+ MK+++ I P++EH+G
Sbjct: 298 GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 357

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C+VDLL RA  V  A  +I+NM +  N+V+W TLLGAC   GH  +AE     +++LEP 
Sbjct: 358 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPD 417

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
             G YV+LSNLYA   +W +  ++R+ M  + ++KTPG S +EL   + +F  GDRSH Q
Sbjct: 418 SCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 477

Query: 506 TEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           TE+I+AM+ E+T+++ L+ G+VP T NV  DIEEEEKE +L  HSEK+AIA  L++T  G
Sbjct: 478 TEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSG 537

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +P+R+VKNLRVC DCH  +K+ SKVY+REIV RDRSRFHHFK+G CSC D+W
Sbjct: 538 SPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/605 (44%), Positives = 385/605 (63%), Gaps = 17/605 (2%)

Query: 16  ISDLPCRVKSLYHST-PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN 74
           I   P +  S Y++T P+S    + S + KC +L         +LKQ+ AFSI+  +  N
Sbjct: 10  IQQSPSQHSSYYNTTYPSS----LLSCLPKCTSL--------KELKQIQAFSIKTHLQ-N 56

Query: 75  NPDLGKYLIYAIVS--LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYS 132
           +  +   LI +      +  M YAH +F  +  P+I  +N+M RGY+ S  PL A+ L+ 
Sbjct: 57  DLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFI 116

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           K     + PD +T+P LLKA       + G+Q H +AI+ G     +V  +L++MYA   
Sbjct: 117 KALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCN 176

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            V  A +VF+ + E  +V++N++I G+A + +PNEAL+LFR++ +  ++P+  T++S+ S
Sbjct: 177 DVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLS 236

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           +CA LGAL LG+  H YV K GL   V VN AL+D Y+KCG +  A  VF  M  R+  +
Sbjct: 237 SCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQA 296

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           WS ++V  A++G G++ + +F+EM      P E+TF+G+LYACSH G+VDEGF YF  M 
Sbjct: 297 WSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMS 356

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           + YGI+P I+H+GCMVDLLGRAGL+ +AY++I  + + P  ++WRTLL +C+ HG+  +A
Sbjct: 357 EVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELA 416

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           +   + +L+L+  H GDYV+LSNL A   +W +V  +R+ M+ +   K PG S +E+ N 
Sbjct: 417 KQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNV 476

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEK 551
           V EFF GD  H  +  +H  L E+ K+LK  GYVP T  V   D+E+EEKE  L YHSEK
Sbjct: 477 VHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEK 536

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +AI+F L+NT PGT +RVVKNLRVC DCH A KLIS +  REI++RD  RFHHFKDG CS
Sbjct: 537 LAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCS 596

Query: 612 CRDYW 616
           C DYW
Sbjct: 597 CGDYW 601


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/612 (43%), Positives = 371/612 (60%), Gaps = 47/612 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSH 102
           I L Q   S KH LK VHA  +R G+     D   YL+  ++  SF     +Y+H IF  
Sbjct: 14  IRLFQGFNSLKH-LKHVHAALLRLGL-----DEDSYLLNKVLRFSFNFGNTNYSHRIFHQ 67

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            ++PNIF +NTMI G   + +   ++E+Y  M   G+ PD+ T+PFLLKA ++L D ++G
Sbjct: 68  TKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLG 127

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA------------------------- 197
            + H + ++ G ES  FV  SLV +Y   G + +A                         
Sbjct: 128 IKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGV 187

Query: 198 -------------CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                        C VF+ M E+D+V+W+S+I G+ASNG P EAL LF +M +EG  PD 
Sbjct: 188 GKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDC 247

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           Y MV +  ACA LGAL LG  A   + +     N  +  AL+D Y+KCG + +A  VFR 
Sbjct: 248 YAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRG 307

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           MRK++ V W+  + GLA++G  K A  LF +ME  G  P   TFVG+L AC+H G+VDEG
Sbjct: 308 MRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEG 367

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             YF  M+  + + P+IEH+GCMVDLLGRAG + +A++ +++M M  NA++W  LLG C 
Sbjct: 368 RQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCR 427

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           +H  + + E     L+ LEP +SG+YVLLSN+Y+   +W +  ++R  M +  +KK PG+
Sbjct: 428 LHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGY 487

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +E+   V EF +GD SHP +E+I+A L E+ K LK  GYVP T+ V  DIEEEEKE  
Sbjct: 488 SWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHF 547

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           +  HSEK+AIAF L++TAP   +RVVKNLRVC DCH AIK IS+   REI+VRD +RFH 
Sbjct: 548 IGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHC 607

Query: 605 FKDGHCSCRDYW 616
           F DG CSC+DYW
Sbjct: 608 FNDGSCSCKDYW 619


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/603 (43%), Positives = 388/603 (64%), Gaps = 10/603 (1%)

Query: 20  PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLG 79
           P  ++++ +   +S  NP  +  + C+ LLQ C ++  KL Q+H   ++ G+  N   L 
Sbjct: 8   PKLLRTINNVLASSTPNP-RAPEQNCLALLQAC-NALPKLTQIHTHILKLGLHNNPLVLT 65

Query: 80  KYLIYAIVSLSFPMSYAHN-IFSHVQDPNI---FTWNTMIRGYAESANPL-LAVELYSKM 134
           K+   +I SL     YA + +FS   D  +   F +NT+IR YA++ +    A+ LY  M
Sbjct: 66  KFA--SISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIM 123

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-GH 193
               I P+  TYPF+LKA + L  + +G+  H   ++ GF+  + VQN++VHMY+   G 
Sbjct: 124 LHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGG 183

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +  A KVF+ M + D V W+++I G+A  G+  EA+ LFREM    V PD  TMVS+ SA
Sbjct: 184 INSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSA 243

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C +LGAL LG+    Y+ +  +   V V+NAL+D ++KCG I  A ++FR M ++  VSW
Sbjct: 244 CTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSW 303

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++++VG+A++G G+EA  LF+EM   G  P +V F+G+L ACSH G+V+ G  YF  M  
Sbjct: 304 TSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMK 363

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +Y ++PKIEH+GCMVD+  R GLVK+A E+++NM + PN VI RTL+ AC  HG   + E
Sbjct: 364 KYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGE 423

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
                L++ EP H  +YVLLSN+YA    W    ++R  M  + +KK PG +++E+ N +
Sbjct: 424 KITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEI 483

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
           +EF  GD+SH Q +EI+ M+ E+ +++K  GY P T  V  DI EE+KED+L+ HSEK+A
Sbjct: 484 YEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLA 543

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           IAF L+ T PGTP+R+VKNLRVC+DCH A K ISK+Y REI++RDR+RFHHFK G CSC 
Sbjct: 544 IAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCG 603

Query: 614 DYW 616
           D+W
Sbjct: 604 DFW 606


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/603 (42%), Positives = 385/603 (63%), Gaps = 33/603 (5%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + LL+ C++++  LK +HA  +R  +  +     + + + I S +  + YA  + S +Q+
Sbjct: 21  LVLLECCSNAR-DLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQN 79

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN+F +N +IRG + S NP  +   Y K    G+ PD  T+PFL+KA ++L +  MG QT
Sbjct: 80  PNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQT 139

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------------- 194
           H  AI++GFE   +VQNSLVHMYA+ G +                               
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDA 199

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           K A ++F+ M ER+LV W+++I+G+A N    +A+  F  + +EGV  +   MV + S+C
Sbjct: 200 KSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSC 259

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A LGALA+G +AH YV +  LS N+ +  A++D Y++CG +  A  VF ++ +++ + W+
Sbjct: 260 AHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWT 319

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            L+ GLA++G+ ++AL  F EM   GFVP ++TF  VL ACSH GMV+ G   F+ MK +
Sbjct: 320 ALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRD 379

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           +G+ P++EH+GCMVDLLGRAG +++A +++  M + PNA IWR LLGAC IH +  + E 
Sbjct: 380 HGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGER 439

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
               LL+++P++SG YVLLSN+YA   +W +V  +R+ M  + V+K PG+SL+E+  +V 
Sbjct: 440 VGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVH 499

Query: 495 EFFMGDRSHPQTEEIHAMLAEIT-KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
           EF +GD++HP+ E+I  +  +I   K+KL GYV  T     DI+EEEKE AL  HSEK+A
Sbjct: 500 EFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLA 559

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           IA+ ++     TP+R+VKNLRVC DCH A KLISKV+  E++VRDR+RFHHFK+G CSC 
Sbjct: 560 IAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCM 619

Query: 614 DYW 616
           DYW
Sbjct: 620 DYW 622


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/594 (43%), Positives = 368/594 (61%), Gaps = 33/594 (5%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           +S  +LKQ+HA  ++   PL++  L +  + ++ + +   SYA  IF  +    +  WNT
Sbjct: 26  TSPFELKQLHAHLLKTNSPLSSLPLSR--VASVCAFNSSFSYAKLIFQLLDASEVTHWNT 83

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
            +R +AE  +P  A+ L+ ++    I PD +T  F+LKA S+L DVR G+  H    + G
Sbjct: 84  CLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLG 143

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN-------------------- 213
            +S +F+QN +VH+YA  G +  A KVF+ M +RD++ WN                    
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 214 -----------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                      S+I G+A  GK  EA+ LF EM   G+ P+  T+V++  ACA++G L L
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           GRR H +  + G   N+ V N L+D Y KCG +  A R+F  M +R  VSWS ++ GLA 
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G  ++AL LF +M   G  P  VTF+G+L+ACSH GMV++G  YF  M  +YGI+P+IE
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+GCMVDL  RAGL+++A+E+I NM + PN V+W  LLG C +H +  +AE A   L +L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKL 443

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +P + G YV+LSN+YA   RW +V  VR+ M    VKKTPG S + +   V+ F  GD +
Sbjct: 444 DPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDT 503

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HPQTEEI     ++ +++KL+GYVP T  V  D+EE++KE  L  HSEK+A+ F L+ T 
Sbjct: 504 HPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTT 563

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           PGT +R++KNLRVC DCH A+K+IS V +REIVVRDR+RFH FK+G CSC DYW
Sbjct: 564 PGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/619 (43%), Positives = 392/619 (63%), Gaps = 49/619 (7%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL-GKYLIYAIVSLSFP- 92
           ++P  S+V  C TL         +LKQ+H   + +G+ LN+P L G+++  A ++L+ P 
Sbjct: 9   KHPTISMVEPCTTL--------RELKQIHTQLLINGL-LNDPQLVGQFV--ASIALNNPN 57

Query: 93  -MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK-MHVSG-IKPDTHTYPFL 149
            + Y++ +  + Q+P +FT+N+MIR +++S+ P  +   YS+ +H +G + PD +T+ FL
Sbjct: 58  NLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFL 117

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC----------- 198
           ++  ++L     G   H  A++ GFE    VQ+ L++MYA  G + DAC           
Sbjct: 118 VRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGL-DACHRVFSSICEPD 176

Query: 199 ---------------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
                                K+F+ MS +D +AWN++I+G+   G+  EAL+LF  M  
Sbjct: 177 LVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQR 236

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV+ +  +MVS+ SAC+ LGAL  GR AH Y+ +  L   + +  AL+D Y+KCG +  
Sbjct: 237 EGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNK 296

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  VF  M+++N  +WS+ + GLA+NG G++ LELF  M+     P E+TFV VL  CS 
Sbjct: 297 AMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSV 356

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG  +F+ M   YGI P++EH+GCMVDL GRAG + +A  +I +M + P+   W 
Sbjct: 357 VGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWG 416

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LL AC I+ +  + E+A   +++LE K+ G YVLLSN+YA  + W  V  VR+TM  + 
Sbjct: 417 ALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKG 476

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           V+K PG S++E+G  V EFF+GD+SHP+  EI  ML EI+++LKL GYV  T  VF DIE
Sbjct: 477 VRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIE 536

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEKEDAL  HSEKIAIAF L++ +P  P+R+VKNLRVC DCH A K+ISK ++REIVVR
Sbjct: 537 EEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVR 596

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           DR+RFHHF+DG CSC+ YW
Sbjct: 597 DRNRFHHFRDGECSCKGYW 615


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/569 (44%), Positives = 359/569 (63%), Gaps = 35/569 (6%)

Query: 80  KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
           K + +  +  S  + YA  +F+ + +P  FT N++IRGY     P  A+  Y  M + G+
Sbjct: 15  KIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGL 74

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
            PD  T+P L K+   L +   G+Q H  + + GF S  ++QN+L++MY+  G +  A K
Sbjct: 75  DPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARK 131

Query: 200 VFELMSERDLVAW--------------------------------NSVINGFASNGKPNE 227
           VF+ M  + +V+W                                N +ING   +    E
Sbjct: 132 VFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEE 191

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL+LF EM   GV+ D  TM SL  AC  LGAL LG+  H Y+ K  +  +V +  AL+D
Sbjct: 192 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 251

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG I +A RVF+EM +++ ++W+ L+VGLA+ G G +ALELF EM++    P  +T
Sbjct: 252 MYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAIT 311

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           FVGVL ACSH G+V+EG +YF  M ++YGI P IEH+GCMVD+LGRAG + +A + IQNM
Sbjct: 312 FVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 371

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
            M P+  +   LL AC IHG+  +AE A   L++L+PK+ G YVLLSN+Y+  + W   +
Sbjct: 372 PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAK 431

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
           ++R  MV+  +KK PG S +E+G  V EF  GD SHPQ+ EI+  L ++ ++LK  GYVP
Sbjct: 432 KMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVP 491

Query: 528 RTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
               V  D++E+EKE+ LS HSEK+AIAF L++T PGTP+RVVKNLRVC+DCH A+K IS
Sbjct: 492 DKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFIS 551

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +VY+REI+VRDR+RFHHF  G CSCRD+W
Sbjct: 552 EVYNREIIVRDRNRFHHFTKGSCSCRDFW 580


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/571 (44%), Positives = 369/571 (64%), Gaps = 4/571 (0%)

Query: 48  LLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+VC+   +  + +Q+HA  ++ G    +    K  +  + +    +  A  +F  + +
Sbjct: 130 ILKVCSRLQALSEGEQIHALIMKCG--FGSHGFVKNTLIHMYANCGEVEVARRVFDEMSE 187

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+ TWN+M  GY +S N    V+L+ +M    I+ D  T   +L A  +LAD+ +GE  
Sbjct: 188 RNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWI 247

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           +      G +    +  SLV MYA  G V  A ++F+ M  RD+VAW+++I+G++   + 
Sbjct: 248 NRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRC 307

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL LF EM    ++P+  TMVS+ S+CA LGAL  G+  H ++ K  +   V +  AL
Sbjct: 308 REALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTAL 367

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +DFY+KCG + ++  VF +M  +N +SW+ L+ GLA NG GK+ALE F  M      P +
Sbjct: 368 MDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTF+GVL ACSH G+VDEG   F  M  ++GI P+IEH+GCMVD+LGRAGL+++A+++I+
Sbjct: 428 VTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIK 487

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           NM + PNAVIWRTLL +C +H +  I E +   L+ LEP HSGDY+LLSN+YA   RW +
Sbjct: 488 NMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWED 547

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             +VR  M ++ +KKTPG SL+EL   + EFF  D  H Q+EEI+  + ++ K++K  GY
Sbjct: 548 ALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGY 607

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP T     D EE++KE ++S+HSEK+AIAF L+ + PGT +R+ KNLRVC DCH A KL
Sbjct: 608 VPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKL 667

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +SKV++REIVVRDR+RFHHFK+G CSC DYW
Sbjct: 668 VSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 233/457 (50%), Gaps = 44/457 (9%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           LP +  +   S     ENP T ++ +C T+          L ++HA  I+  + L     
Sbjct: 8   LPAKTPTAKTSISLFPENPKTLILEQCKTI--------RDLNEIHAHLIKTRLLLKPKVA 59

Query: 79  GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
              L  A + L   M YA +IF  + +P+   +N MIRG+    +P  A+ L+ +MH + 
Sbjct: 60  ENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENS 119

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           ++PD  T+P +LK  S+L  +  GEQ H++ ++ GF S  FV+N+L+HMYA  G V+ A 
Sbjct: 120 VQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVAR 179

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           +VF+ MSER++  WNS+  G+  +G   E + LF EM    +  D  T+VS+ +AC  L 
Sbjct: 180 RVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLA 239

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            L LG   + YV + GL  N  +  +L+D Y+KCG +  A+R+F +M +R+ V+WS ++ 
Sbjct: 240 DLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMIS 299

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-----FSYFKRMK- 372
           G +     +EAL+LF EM+     P E+T V +L +C+  G ++ G     F   KRMK 
Sbjct: 300 GYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKL 359

Query: 373 ---------DEYG----IMPKIEHFGCM-----------VDLLGRAGLVKQAYEYIQNML 408
                    D Y     +   IE FG M           +  L   G  K+A EY   ML
Sbjct: 360 TVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLML 419

Query: 409 ---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
              + PN V +  +L AC+   H+ + +  R   + +
Sbjct: 420 EKNVEPNDVTFIGVLSACS---HAGLVDEGRDLFVSM 453


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/608 (43%), Positives = 376/608 (61%), Gaps = 34/608 (5%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY------- 81
           S P    +   +  + C+ LL   +S+   L Q  AF ++ G+  N+  L +        
Sbjct: 9   SAPRLSPSAARAAEQHCLRLL-AASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASA 67

Query: 82  -------LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES---ANPLLAVELY 131
                  L+ A++  S P+             + F  NT+IR +A S   +  L A   +
Sbjct: 68  APALLDPLVAALLRPSVPL-------------DAFLANTLIRAHATSPIHSLRLRAAAFF 114

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
             M    + P+  T+PFLLKA + L     +G Q H+ A++ GF +  +V N+L+HMY+ 
Sbjct: 115 PLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSC 174

Query: 191 FG--HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
           FG   + DA  VF+ M +   V W+++I G+   G  ++A+ LFREM + GV+ D  T++
Sbjct: 175 FGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVI 234

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
            + +A  +LGAL L R    +V + G+  +V + NAL+D  +KCG +  A  VF  M++R
Sbjct: 235 GVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQR 294

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW++++  LA+ G GKEA+ +F+EM++ G  P +V F+GVL ACSH GMVDEG  YF
Sbjct: 295 SVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYF 354

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             MK EYGI PKIEH+GCMVD+ GRAG+V++A E+++ M + PN VIWR+L+ AC  HG 
Sbjct: 355 DAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGR 414

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             + E    +LL   P H  +Y++LSN++A  QRW    E+RR M K  +KK PG S+VE
Sbjct: 415 LELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVE 474

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           L   V EF  GD SHPQ ++I+ M+ E+ ++L+  G++  T  V  D++EE+KE AL +H
Sbjct: 475 LDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWH 534

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+AIAF L+ T PGT VRVVKNLRVC+DCH AIK IS+VY REIVVRDRSRFH FKDG
Sbjct: 535 SEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDG 594

Query: 609 HCSCRDYW 616
            CSC+D+W
Sbjct: 595 SCSCKDFW 602


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/592 (43%), Positives = 371/592 (62%), Gaps = 34/592 (5%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY--------------LIYAIVSLS 90
           C+ LL   +S+   L Q  AF ++ G+  N+  L +               L+ A++  S
Sbjct: 25  CLRLL-AASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVTALLRPS 83

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAES---ANPLLAVELYSKMHVSGIKPDTHTYP 147
            P+             + F  NT+IR +A S   +  L A   +  M    + P+  T+P
Sbjct: 84  VPL-------------DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFP 130

Query: 148 FLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELM 204
           FLLKA + L     +G Q H+ A++ GF +  +V N+L+HMY+ FG   + DA  VF+ M
Sbjct: 131 FLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRM 190

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
            +   V W+++I G+   G  ++A+ LFREM + GV+ D  T++ + +A  +LGAL L R
Sbjct: 191 PKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELAR 250

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
               +V + G+  +V + NAL+D  +KCG +  A  VF  M++R+ VSW++++  LA+ G
Sbjct: 251 WVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEG 310

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            GKEA+ +F+EM++ G  P +V F+GVL ACSH GMVDEG  YF  MK EYGI PKIEH+
Sbjct: 311 RGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHY 370

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GCMVD+ GRAG+V++A E+++ M + PN VIWR+L+ AC  HG   + E    +LL   P
Sbjct: 371 GCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYP 430

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
            H  +Y++LSN++A  QRW    E+RR M K  +KK PG S+VEL   V EF  GD SHP
Sbjct: 431 AHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHP 490

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           Q ++I+ M+ E+ ++L+  G++  T  V  D++EE+KE AL +HSEK+AIAF L+ T PG
Sbjct: 491 QYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPG 550

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T VRVVKNLRVC+DCH AIK IS+VY REIVVRDRSRFH FKDG CSC+D+W
Sbjct: 551 TQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/583 (44%), Positives = 375/583 (64%), Gaps = 4/583 (0%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           ENP      K   L +  ++  H + Q+ +  I + +P+++ +L K + +++ S  F  S
Sbjct: 36  ENPPQITESKHSHLTKSISNHAH-MNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAAS 94

Query: 95  -YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
                 F    D ++   N+MIR Y +S   L +V +Y++M  +GI PD+ T+P +LK++
Sbjct: 95  ALLFTQFYGFIDSDL--CNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSV 152

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++L    +G+  H   I+ GFES V+V  +LV+MY     V DA +VF+ + +R++V+WN
Sbjct: 153 AQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWN 212

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I G+  N    + + +FREM   G +P   TMV +  ACA LGAL  GR    Y+   
Sbjct: 213 ALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHN 272

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
            L  NV V  AL+D Y+KCG++  A+++F+ MR +N  +W+ L+ G A+NG G+ AL+ F
Sbjct: 273 RLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAF 332

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M +  F P EVTF+GVL AC H G+V+EG +YF  MK+E+G+ P+IEH+GCMVDLLGR
Sbjct: 333 SRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGR 392

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A + IQ M M P+ +IWR LLGAC IHG+  + E A   LL+LEP +  +YVLL
Sbjct: 393 AGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLL 452

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           +NLYA +QRW  V EVR  M   RV+K PG S +E+ N V+EF + +   P  EE++ +L
Sbjct: 453 ANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLL 512

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
           A++ KKLKL GYV  T     DIEEEEKE +L YHSEK+A+AF L+ +  G  +R+VKNL
Sbjct: 513 ADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNL 572

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K++SKVY R+I VRDR+RFHHF  G CSC+DYW
Sbjct: 573 RICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/587 (42%), Positives = 370/587 (63%), Gaps = 2/587 (0%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           P S E       ++C++LL+ C S+  + KQ HA  ++ G+  ++      +    +S  
Sbjct: 20  PQSPELSFKLGEKECVSLLKKC-SNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDW 78

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             M YA +IF  + +   F +NTM+RG+ +  N   A+  Y +M   G+KPD  TYP LL
Sbjct: 79  GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           KA ++L  V  G Q H+  ++ G E+ VFVQNSL+ MY   G +   C VFE M+ER + 
Sbjct: 139 KACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVA 198

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGALALGRRAHTY 269
           +W+++I   AS G  ++ L L  +M++EG    +   +VS+ SAC  LGAL LGR  H +
Sbjct: 199 SWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGF 258

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + +     NV V  +L++ Y KCG +     +F++M K+N +S+S ++ GLA++G+G+E 
Sbjct: 259 LLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREG 318

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           L +F EM   G  P ++ +VGVL ACSH G+V EG   F RMK E+GI P I+H+GCMVD
Sbjct: 319 LRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVD 378

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           L+GRAG + +A E I++M M PN V+WR+LL A  +H +    EIA   L +L+ + + D
Sbjct: 379 LMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASD 438

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YV+LSN+YA  QRW +V + R  M  + + + PG SLVE+  ++  F   D  HPQ+E +
Sbjct: 439 YVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESV 498

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           + ML ++  +LK EGY P T  V  D++EEEK+  LS HS+K+AIA+ L++T+ G+P+R+
Sbjct: 499 YEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRI 558

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V+NLR+C DCH   KLIS ++ REI VRDR RFHHFKDG CSCRDYW
Sbjct: 559 VRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/480 (49%), Positives = 336/480 (70%), Gaps = 4/480 (0%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY----AAFGHVKD 196
           P+  TYPF+LKA + + ++ +G+  H   ++ GF   V VQN+LVHMY       G ++ 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A KVF+ M + D V+W+++I G+   G+ ++A+ LFREM  +GV PD  TMVS+ SAC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGAL LG+   +YV K  +  NV ++NAL+D ++KCG +  A  +FR MR+RN VSW+++
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + GLA++G G EA+ +F+EM   G  P +V F+G+L ACSH G+VD+G  YF  M+ ++ 
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           I+PKIEH+GCMVD+L RAGLVK+A +++Q M + PN V+WRTL+ AC  HG   + E   
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKIT 307

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEF 496
             L++ EP H  +YVLLSN+YA    W     +R  M  + +KK PG +++EL N ++EF
Sbjct: 308 RQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEF 367

Query: 497 FMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF 556
             GD+SH Q++EI+ M+ E+ K++K  GY+P T  V  DI++E+KED L+ HSEK+AIAF
Sbjct: 368 VAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAF 427

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L+NT PGT +R+VKNLRVC DCH A K ISK+Y+REIVVRDR+RFHHFK+G CSCRD+W
Sbjct: 428 ALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 2/234 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + +A  +F  +   +  +W+ MI GY        A+ L+ +M + G+ PD  T   +L A
Sbjct: 65  IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L  + +G+   S   +   +  V + N+L+ M+A  G V  A  +F  M ER++V+W
Sbjct: 125 CTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            SVI G A +G+  EA+ +F EM   GV PD    + L SAC+  G +  G+R    + K
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRK 244

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
              +   +     ++D   + G++  A +  +EM    N V W TL+     +G
Sbjct: 245 DFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/637 (41%), Positives = 385/637 (60%), Gaps = 66/637 (10%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           C++LL +C S     KQ+HA  ++ G+  +    GK L +  +SLS  + YA  +F +  
Sbjct: 8   CLSLLNICKSLT-TFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTP 66

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGE 163
           +P++F  NT+IRG  ES  P  ++  + +M  +   P D+ ++ F++KA + L  VR+G 
Sbjct: 67  NPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGI 126

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV----------------------- 200
           Q H  A+ +G ++ +FV  +L+ MY   G V  A KV                       
Sbjct: 127 QLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGG 186

Query: 201 --------FELMSERDLVAWN-------------------------------SVINGFAS 221
                   F+LM  R+L++WN                               ++I GFA 
Sbjct: 187 DMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAH 246

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG   EA + FRE+  +G+ P+  ++  + SACA+ GAL  G+  H ++ K GL+  V+V
Sbjct: 247 NGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSV 306

Query: 282 NNALLDFYSKCGIIIAAQRVF-REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           NNALLD YSKCG ++ AQ VF R M +RN VSW++++  LA++G G+EA+ +F +ME  G
Sbjct: 307 NNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESG 366

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P E+ F+ +LYACSH G+V++G  YF +MK  Y I P IEH+GCMVDL GRAG +++A
Sbjct: 367 IRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKA 426

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           YE++  M +P  A+IWRTLLGAC++HG   +AE  +  L +L+P +S D+VLLSN YA  
Sbjct: 427 YEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVA 486

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W +   VRR+M ++R+ KTPG S++E+   ++ F  G + +  TEE +  L EI ++L
Sbjct: 487 GKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRL 546

Query: 521 KLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           ++E GYVP    V  DIEEEEKE ++S HSEK+A+AF +     G  +R+VKNLR+C DC
Sbjct: 547 RVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDC 606

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H  +KLIS++Y  EIVVRDRSRFH FKDG+CSCRDYW
Sbjct: 607 HAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 139/351 (39%), Gaps = 66/351 (18%)

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKD-ACKV 200
           + T P  L  ++    +   +Q H+  ++ G ES  F+   L+H  A +     D AC++
Sbjct: 2   SKTEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRL 61

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGA 259
           F      D+   N++I G   + +P ++L  F EM       PD ++   +  A A L +
Sbjct: 62  FRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRS 121

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           + +G + H      GL  ++ V   L+  Y +CG +  A++VF EM + NA++W+ +V  
Sbjct: 122 VRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTA 181

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVG---------------------------VL 352
               G  K   ELF  M +   +   V   G                           ++
Sbjct: 182 CCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMI 241

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPK--------------------------IEHFG- 385
              +H G  +E FS+F+ ++ + G+ P                           IE  G 
Sbjct: 242 VGFAHNGYFEEAFSFFRELQRK-GMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL 300

Query: 386 --------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
                    ++D   + G V  A    + ++   N V W +++ A  +HGH
Sbjct: 301 AWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGH 351


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/603 (42%), Positives = 379/603 (62%), Gaps = 3/603 (0%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNN 75
           IS +P    +L   + A  +N         ++LL  C +S ++LKQ+ A++I+  +  + 
Sbjct: 3   ISCIPTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKC-TSLNELKQIQAYTIKTNLQSDI 61

Query: 76  PDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
             L K + +  ++ +   M +AH++F  + D +I  +N M RGYA S +P LA  L+ ++
Sbjct: 62  SVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGEL 121

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
             SG+ PD +T+  LLKA +    +R G   H  A++ G    +++  +L++MYA    +
Sbjct: 122 LCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDM 181

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  VF+ M +  +V++N++I G+A + +PNEAL+LFRE+ +  +EP   TM+S+  +C
Sbjct: 182 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSC 241

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A LGAL LG+  H YV K G    V VN AL+D ++KCG +  A  +F  MR R+  +WS
Sbjct: 242 ALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWS 301

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++V  A +G G +A+ +F+EM+  G  P E+TF+G+LYACSH G+V++G  YF  M   
Sbjct: 302 AMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKT 361

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YGI P I+H+GCMVDLLGRAG + +AY ++  + +    ++WRTLL AC+ HG+  +A+ 
Sbjct: 362 YGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKR 421

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
               + +L+  H GDYV+LSNLYA   RW +V  +R+ M    V K PG S VE+ N V 
Sbjct: 422 VIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 481

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIA 553
           EFF GD  H  + E+   L E+ K++KL GYVP T  V+ AD+EEE KE  L YHSEK+A
Sbjct: 482 EFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 541

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +AF L+NT PGT +RV KNLR+C DCH A KLIS ++ R+IV+RD  RFH F+DG CSC 
Sbjct: 542 MAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCG 601

Query: 614 DYW 616
           D+W
Sbjct: 602 DFW 604


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/596 (44%), Positives = 380/596 (63%), Gaps = 24/596 (4%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           S  +P   ++ KC TL          LKQVHA  I  G+  +   L + L+   +S +  
Sbjct: 7   SSNHPTLQLLEKCKTL--------DTLKQVHAHMITTGLIFHTYPLSRILL---ISSTIV 55

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAE-SANPLLAVELYSKMHV-SGIKPDTHTYPFLL 150
            ++A +IF+H+ +P IF +NT+I   A    +  +A  LYS++   + +KP+  T+P L 
Sbjct: 56  FTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLF 115

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLV--FVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           KA      +R G   H+  ++   E     FVQ +L++ YA  G V     +F  +S+ D
Sbjct: 116 KACGSQPWLRHGRALHTHVLK-FLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPD 174

Query: 209 LVAWNSVINGFASNGKPN--------EALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           L +WNS+++ +  N            E LTLF EM    ++ +  T+V+L SACAELGAL
Sbjct: 175 LASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGAL 234

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           + G  AH YV K  L  N  V  AL+D YSKCG +  A ++F ++  R+ + ++ ++ G 
Sbjct: 235 SQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGF 294

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           A++G+G +AL+LFK+M + G  P +VT V  + +CSH G+V+EG   F+ MK+ YG+ PK
Sbjct: 295 AIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPK 354

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           +EH+GC+VDLLGRAG +++A E + NM M PNAVIWR+LLGA  +HG+  I E+    L+
Sbjct: 355 LEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLI 414

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           QLEP+ SG+YVLLSN+YA   RW +V+ VR+ M    + K PG SLVE+G  + EF MGD
Sbjct: 415 QLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGD 474

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
           ++HP+++EI+  L E++++L   G+ PRT  V  DIEEEEKEDALSYHSE++AIAF L+ 
Sbjct: 475 KTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIA 534

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +    P+R++KNLRVC DCH + KLISK+Y REI+VRDR+RFHHFK+G CSC DYW
Sbjct: 535 SHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/589 (44%), Positives = 363/589 (61%), Gaps = 37/589 (6%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L Q+HA   RHG+  ++P L   L  +  SL   + Y+  +F   Q+P++F W  +I G+
Sbjct: 46  LLQIHAVLFRHGLD-HHPILNFKLQRSYASLG-RLDYSVALFGRTQNPSVFFWTAIIHGH 103

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A       A+  Y++M   G++P+  T+  +L    KL  +  G+  HS A++ GF+S +
Sbjct: 104 ALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDL 159

Query: 179 FVQNSLVHMYAAFGHVKDACKVFEL-------------------------------MSER 207
           +V+  L+ +YA  G V  A ++F+                                M ER
Sbjct: 160 YVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 219

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V WN +I+G+  NG PNEAL LFR M     +P+  T++S+ SAC +LGAL  GR  H
Sbjct: 220 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 279

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
           +Y+   G+  NV+V  AL+D YSKCG +  A+ VF ++  ++ V+W++++VG A++GF +
Sbjct: 280 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQ 339

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EAL+LFK M   G  P  +TF+G+L AC H G V EG+  F +MKDEYGI PKIEH+GCM
Sbjct: 340 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 399

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           V+LLGRAG V+QAYE ++NM + P+ V+W TLLGAC +HG  A+ E     L+     +S
Sbjct: 400 VNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANS 459

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G Y+LLSN+YA    W  V  +R  M    VKK PG S +E+ N+V EF  G  +HP+ +
Sbjct: 460 GTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRK 519

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
           EI+ ML EI   LK  GY P+T+ V  DI E EKE +L  HSEK+AIAF L+NT PGT +
Sbjct: 520 EIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTI 579

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++VKNLRVCADCH   KLISK+  R+IVVRDR+RFHHF +G CSC DYW
Sbjct: 580 KIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/560 (43%), Positives = 356/560 (63%), Gaps = 1/560 (0%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           + KQ HA  ++ G+  ++      +    +S    M YA +IF  + +P  F +NTM+RG
Sbjct: 3   EFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRG 62

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           + +  N   A+  Y +M   G+KPD  TYP LLKA ++L  V  G Q H+  ++ G E+ 
Sbjct: 63  HVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLEND 122

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VFVQNSL+ MY   G +   C VFE M+ER + +W+++I   AS G  ++ L L  +M++
Sbjct: 123 VFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSN 182

Query: 238 EGV-EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           EG    +   +VS+ SAC  LGAL LGR  H ++ +     NV V  +L++ Y KCG + 
Sbjct: 183 EGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLY 242

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
               +F++M K+N +S+S ++ GLA++G+G+E L +F EM   G  P ++ +VGVL ACS
Sbjct: 243 KGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACS 302

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V EG   F RMK E+GI P I+H+GCMVDL+GRAG + +A E I++M M PN V+W
Sbjct: 303 HAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLW 362

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           R+LL A  +H +    EIA   L +L+ + + DYV+LSN+YA  QRW +V   R  M  +
Sbjct: 363 RSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSK 422

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + + PG SLVE+  ++  F   D  HPQ+E ++ ML ++  +LK EGY P T  V  D+
Sbjct: 423 GLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDV 482

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +EEEK+  LS HS+K+AIA+ L++T+ G+PVR+V+NLR+C DCH   KLIS ++ REI V
Sbjct: 483 DEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITV 542

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR RFHHFKDG CSCRDYW
Sbjct: 543 RDRHRFHHFKDGACSCRDYW 562


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 367/591 (62%), Gaps = 39/591 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++HG+  N      ++  A+V +      +  A  +F      ++ TWN +I 
Sbjct: 138 RQLHGHVLKHGLQYN-----VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 192

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y +      +  L+  M    + P T T   +L A SKL D+R G++ HS       ES
Sbjct: 193 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 252

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN---------- 226
            + ++N+++ MYA  G +  A  +F  M+ RD+++W ++++GF + G+ +          
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 312

Query: 227 ---------------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
                                EAL LFR M +  V+PD +TMVS+ +ACA LGAL LG  
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 372

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
             TY+ +  + +++ V NAL+D Y KCG +  A+ +FREM +R+  +W+ ++VGLAVNG 
Sbjct: 373 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 432

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G++AL++F  M     +P E+T++GVL AC+H G+VD+G  YF RM  ++GI P I H+G
Sbjct: 433 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C+VDLL RAG +K+AYE I+NM +  N+++W  LL  C ++  S +AE+    +L+LEP 
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           +   YVLL N+YA  +RW +++E+R+ M+ + +KKTPG SL+E+  RV EF  GDRSHPQ
Sbjct: 553 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQ 612

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           T+ I A L ++T+ LKL GY P    VF DI EE+KE+++  HSEK+AIAF L+N+ PG 
Sbjct: 613 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGV 672

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +R+ KNLR+C DCH   KL+SKVY+RE++VRDR+RFHHFK G CSC+DYW
Sbjct: 673 TIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/571 (44%), Positives = 369/571 (64%), Gaps = 20/571 (3%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYL--------IYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           Q+H+  ++ G+  N   L K+         ++   S+ FP        SH    + F +N
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSH----DAFLFN 195

Query: 113 TMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           T+IR +A++ +    A+  Y+ M    + P+  T+PF+LKA + +  + +G   H+  ++
Sbjct: 196 TLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVK 255

Query: 172 NGFESLVFVQNSLVHMY------AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
            GFE    V+N+LVHMY       + G V  A KVF+    +D V W+++I G+A  G  
Sbjct: 256 FGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNS 314

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
             A+TLFREM   GV PD  TMVS+ SACA+LGAL LG+   +Y+ +  +  +V + NAL
Sbjct: 315 ARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNAL 374

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D ++KCG +  A +VFREM+ R  VSW++++VGLA++G G EA+ +F EM   G  P +
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDD 434

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           V F+GVL ACSH G+VD+G  YF  M++ + I+PKIEH+GCMVD+L RAG V +A E+++
Sbjct: 435 VAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVR 494

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M + PN VIWR+++ AC   G   + E     L++ EP H  +YVLLSN+YA   RW  
Sbjct: 495 AMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEK 554

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             +VR  M  + ++K PG +++E+ N ++EF  GD+SH Q +EI+ M+ E+ +++K  GY
Sbjct: 555 KTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGY 614

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP T  V  DI+EE+KEDAL  HSEK+AIAF L++T PGTP+R+VKNLRVC DCH A K 
Sbjct: 615 VPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKF 674

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ISKVY+REIVVRDR+RFHHFK+G CSC D+W
Sbjct: 675 ISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/562 (43%), Positives = 352/562 (62%), Gaps = 31/562 (5%)

Query: 86  IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           + SLS  +S A  +F      ++ TWN MI GY  S     +++L+ +M    + P + T
Sbjct: 163 LYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSIT 222

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
              +L A SKL D+ +G++ H        E +  ++N+L+ MYAA G +  A  +F+ M 
Sbjct: 223 LVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMK 282

Query: 206 ERDLVAWNSVINGFASNGKPN-------------------------------EALTLFRE 234
            RD+++W +++ GF + G+                                 E L+LFRE
Sbjct: 283 SRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFRE 342

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M +  ++PD +TMVS+ +ACA LGAL LG     Y+ K  +  +  V NAL+D Y  CG 
Sbjct: 343 MQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGN 402

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A R+F  M  R+ +SW+ ++ GLA+NG+G+EAL++F +M      P EVT +GVL A
Sbjct: 403 VEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCA 462

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+H GMVD+G  +F RM  ++GI P + H+GCMVDLLGRAG +K+A+E I+NM + PN++
Sbjct: 463 CTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSI 522

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W +LLGAC +H    +AE+A   +L+LEP++   YVLL N+YA   RW  + EVR+ M+
Sbjct: 523 VWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMM 582

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
              +KKTPG SL+E+   V EF  GD+ HPQ++EI++ L E++  LK  GY P T  VF 
Sbjct: 583 DRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFL 642

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           DI EEEKE A+  HSEK+AIAF L+++ PG  +R+VKNLR+C DCH   KL+SKVY+RE+
Sbjct: 643 DIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREV 702

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           +VRDR+RFHHF+ G CSC+DYW
Sbjct: 703 IVRDRTRFHHFRHGSCSCKDYW 724



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 228/445 (51%), Gaps = 47/445 (10%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           P+  + P  S+++ C ++ Q        LKQ+H+ +I  G+ ++NP +   +I       
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQ--------LKQIHSQTICTGL-ISNPIVPAQIIAFCCKHE 65

Query: 91  F-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              M YA  +F  +  PN F WN MI+GY+    P  AV +Y +M   G+ PD +TYPFL
Sbjct: 66  LGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFL 125

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LK  ++   V+ G + H   ++ GF S VFVQN+L+H+Y+  G V  A  VF+  S+ D+
Sbjct: 126 LKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V WN +I+G+  + + +E++ LF EM    V P   T+VS+ SAC++L  L +G+R H Y
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV--------VGLA 321
           V  + +     + NAL+D Y+ CG +  A  +F  M+ R+ +SW+ +V        VGLA
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305

Query: 322 VNGFG-----------------------KEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            N F                        KE L LF+EM+     P E T V +L AC+H 
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHF--GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           G ++ G  + K   D+  I  KI+ F    ++D+    G V++A   I N +   + + W
Sbjct: 366 GALELG-EWIKAYIDKNEI--KIDSFVGNALIDMYFNCGNVEKAIR-IFNAMPHRDKISW 421

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQ 441
             ++    I+G+   A    S +L+
Sbjct: 422 TAVIFGLAINGYGEEALDMFSQMLK 446


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/600 (41%), Positives = 376/600 (62%), Gaps = 13/600 (2%)

Query: 22  RVKSLYHSTPASQ---ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           R++   H  P S+   EN + S+++ C        S K  L Q+HA  IR  +  N+   
Sbjct: 52  RLQHQTHPLPKSRDESENQLISLIKSC--------SKKTHLLQIHAHIIRTSLIQNHFIS 103

Query: 79  GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
            ++L  A +S S  M Y+  +FS +  P+   +N MIR Y+ S +P     LY +M   G
Sbjct: 104 LQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRG 163

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P+  +  F++K+  +++ +  G Q H+  +R+G +S   +  +L+ +Y+     ++AC
Sbjct: 164 VPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEAC 223

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS--EGVEPDGYTMVSLFSACAE 256
           KVF+ + + D V+WN +I+    N +  +AL +F  M S  +G EPD  T + L  ACA 
Sbjct: 224 KVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACAN 283

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGAL  G R H Y+ + G    +N+ N+L+  YS+CG +  A  +F+ M +RN VSWS +
Sbjct: 284 LGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAM 343

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + G A++G+G+EA+E F++M+  G  P + T  GVL ACSHCG+VD+G  +F RM   +G
Sbjct: 344 ISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFG 403

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           I P I H+GCMVDLLGRAGL+ QAY+ I +M++ P++ +WRTLLGAC IH H+ + E   
Sbjct: 404 IEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVI 463

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEF 496
             L++L+ + +GDYVLL N+Y+    W  V ++R+ M ++ ++ +PG S +EL  +V EF
Sbjct: 464 GHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEF 523

Query: 497 FMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF 556
            + D  HP+T+EI+ ML EI K+LK+ GYV    +   ++  EEK + LSYHSEK+AIAF
Sbjct: 524 VVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAF 583

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ++ T PGT +RV KNLR+C DCH   K++S  Y+RE+V+RDR+RFHHF++G CSC  YW
Sbjct: 584 GVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/629 (43%), Positives = 379/629 (60%), Gaps = 40/629 (6%)

Query: 22  RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           +++S    TP    NP ++   + ++L   C + +H LKQVHA  I H    N+P     
Sbjct: 49  KLQSSMSRTPNPLTNPPSN--PQILSLFNPCKTLRH-LKQVHAQIITHH---NSPFQLSA 102

Query: 82  LIYAIVSLSFP--MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
           L        FP  ++YA  IF H+Q+P    +N++IR  + S  PL A+ LY  M  SG+
Sbjct: 103 LASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL 162

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-------- 191
           KPD  TYPF++KA ++ +    G   H+  +++GFE   ++ +SL+H+YA          
Sbjct: 163 KPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQ 222

Query: 192 ------------------GHVK-----DACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
                             G+VK      A  VF+ M  RD+++WN++ING+A  GKPNEA
Sbjct: 223 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEA 282

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           L LF +M + GV+P   T+VSL SACA LGAL  G   HTY+    +  N  V  AL+D 
Sbjct: 283 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 342

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y+KCG I  A +VF  M  ++ ++W+T++ G+A++G  KEA +LFKEM+  G  P ++TF
Sbjct: 343 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 402

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           V +L ACSH GMVDEG      M   YGI PK+EH+GC++DLL RAG +++A E I  M 
Sbjct: 403 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 462

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468
           M PN      LLG C IHG+  + E+    L+ L+P HSG Y+LLSN+YA  ++W + ++
Sbjct: 463 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 522

Query: 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVP 527
           VR  M    + K PG S++EL   V  F  GD SHP++ +I+  L EI  +LK   GY  
Sbjct: 523 VRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSA 582

Query: 528 RTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
            T NV  D+EEE+KE AL+ HSEK+AIA+ L++      +R+VKNLRVC DCH  IKLIS
Sbjct: 583 DTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLIS 642

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KVY REI+VRDR+RFHHF+DG CSC D+W
Sbjct: 643 KVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 366/591 (61%), Gaps = 39/591 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++HG+  N      ++  A+V +      +  A  +F      ++ TWN +I 
Sbjct: 159 RQLHGHVLKHGLQYN-----VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 213

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y +      +  L+  M    + P T T   +L A SKL D+R G++ HS       ES
Sbjct: 214 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 273

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN---------- 226
            + ++N+++ MYA  G +  A  +F  M+ RD+++W ++++GF + G+ +          
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 333

Query: 227 ---------------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
                                EAL LFR M +  V+PD +TMVS+ +ACA LGAL LG  
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 393

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
             TY+ +  + +++ V NAL+D Y KCG +  A+ +FREM +R+  +W+ ++VGLAVNG 
Sbjct: 394 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 453

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G++AL++F  M     +P E+T++GVL AC+H G+VD+G  YF RM  ++GI P I H+G
Sbjct: 454 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C+VDLL RAG +K+AYE I+NM +  N+++W  LL  C ++  S +AE+    +L+LEP 
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           +   YVLL N+YA  +RW +++E+R+ M+ + +KK PG SL+E+  RV EF  GDRSHPQ
Sbjct: 574 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQ 633

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           T+ I A L ++T+ LKL GY P    VF DI EE+KE+++  HSEK+AIAF L+N+ PG 
Sbjct: 634 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGV 693

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +R+ KNLR+C DCH   KL+SKVY+RE++VRDR+RFHHFK G CSC+DYW
Sbjct: 694 TIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/596 (43%), Positives = 364/596 (61%), Gaps = 35/596 (5%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV--QDPNIFTW 111
           +S  +L+QVHA  I+   PL+   L +  +    + SF   YA  IF  V  Q P  F W
Sbjct: 39  NSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSF--HYAQQIFKCVEKQKPETFVW 96

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N+ ++  AE  +P+ A+ L+ ++    + PDT T   +L+A   L D+  G   H V  +
Sbjct: 97  NSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK 156

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN------------------ 213
            GF S +++QN +VH+YA+ G + +A  +FE M +RD+V WN                  
Sbjct: 157 VGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDL 216

Query: 214 -------------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
                        S+I G+   GK  EA+ LF +M   GV+ +  T+V++ +ACA+LGAL
Sbjct: 217 FSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 276

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            LG R H Y  + G   NV ++N L+D Y KCG +  A +VF EM +R  VSWS ++ GL
Sbjct: 277 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGL 336

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           A++G  +EAL LF +M   G  P  VTF+G+L+ACSH G++ EG  +F  M  +YGI+P+
Sbjct: 337 AMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQ 396

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           IEH+GCMVDLL RAGL+ +A+E+I NM M PN V+W  LLGAC +H +  +AE A   LL
Sbjct: 397 IEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLL 456

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           +L+P + G YV+LSN+YA   RW +   VR+ M   +VKKTPG S + +   V EF  G+
Sbjct: 457 ELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGE 516

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
            SHP TE+I     E+ ++++L+GYVP T  V  DIEE EK   +S HSEK+A+ F L+N
Sbjct: 517 ESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMN 576

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T   TP+R++KNLR+C DCH A KLIS + +REIVVRDR+RFH F D  CSCRDYW
Sbjct: 577 TPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/525 (45%), Positives = 341/525 (64%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M YA +IF  +  P  F +NTMIRGY    N   A+ LY +M   G++ D  TYP L KA
Sbjct: 35  MDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKA 94

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L  +  G Q H    + G E  +FVQNSL++MY   G ++ +C VFE M  RD+ +W
Sbjct: 95  CASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASW 154

Query: 213 NSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           +++I   AS G  +E L++F EM+ EG   P+   +VS+ SAC  LGAL LGR  H  + 
Sbjct: 155 SAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLL 214

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           +     NV V  +L+D Y KCG I     +F+ M K+N +S+S ++ GLA++G G EAL+
Sbjct: 215 RNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQ 274

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F +M   G  P +V ++GVL AC+H G+VDEG   F RMK E+GI P I+H+GC+V L+
Sbjct: 275 VFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLM 334

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG++ +A E+I++M + PN V+WR LL AC  H +  I EIA  +L +L   + GDYV
Sbjct: 335 GRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYV 394

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           +LSN+YA  +RW +V ++R  M ++   +TPG SLV++  ++++F   D SHPQ + ++ 
Sbjct: 395 VLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYE 454

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
           M+ ++  +LK EGY P T  V  D++EEEK   L  HS+K+A+AF L++T+ G P+R+ +
Sbjct: 455 MIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIAR 514

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR+C DCH   KLIS +Y REI VRDR+RFHHFKDG CSCRDYW
Sbjct: 515 NLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 12/273 (4%)

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           +G +  AC +F  + +     +N++I G+ +      AL L+ EM   GVE D +T  +L
Sbjct: 32  WGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPAL 91

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
           F ACA L ++  G + H Y++K GL  ++ V N+L++ Y KCG I  +  VF  M +R+ 
Sbjct: 92  FKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDV 151

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEG----F 365
            SWS ++   A  G   E L +F EM   G   P E   V VL AC+H G +D G     
Sbjct: 152 ASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHV 211

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           +  + +++   I+        ++D+  + G +++     Q M+   N + +  ++    +
Sbjct: 212 TLLRNIREMNVIVQT-----SLIDMYVKCGCIEKGLSLFQRMV-KKNQLSYSVMITGLAM 265

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           HG    A    S +L+ E     D V L  L A
Sbjct: 266 HGRGMEALQVFSDMLE-EGLKPDDVVYLGVLSA 297


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/521 (46%), Positives = 343/521 (65%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +W TMI  YA+   P  A++L+ +M ++ +KP+  T   +L A ++
Sbjct: 191 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACAR 250

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+   +Q H      G      + ++L+ +Y   G    A  +F  M E++L  WN +
Sbjct: 251 SRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIM 310

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ING   +    EAL+LF EM   GV+ D  TM SL  AC  LGAL LG+  H Y+ K  +
Sbjct: 311 INGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKI 370

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V +  AL+D Y+KCG I +A RVF+EM +++ ++W+ L+VGLA+ G G +ALELF E
Sbjct: 371 EVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHE 430

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++    P  +TFVGVL ACSH G+V+EG +YF  M ++YGI P IEH+GCMVD+LGRAG
Sbjct: 431 MQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAG 490

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + IQNM M P+  +   LL AC IHG+  +AE A   L++L+PK+ G YVLLSN
Sbjct: 491 RIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSN 550

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+  + W   +++R  MV+  +KK PG S +E+G  V EF  GD SHPQ+ EI+  L +
Sbjct: 551 IYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDD 610

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++LK  GYVP    V  D++E+EKE+ LS HSEK+AIAF L++T PGTP+RVVKNLRV
Sbjct: 611 MMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRV 670

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C+DCH A+K IS+VY+REI+VRDR+RFHHF  G CSCRD+W
Sbjct: 671 CSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 205/399 (51%), Gaps = 21/399 (5%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
           Q +P    + KC T+ Q        LKQ+HA  +R  + ++     K + +  +  S  +
Sbjct: 39  QLHPCLLSLEKCTTMSQ--------LKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSL 90

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            YA  +F+ + +P  FT N++IRGY     P  A+  Y  M + G+ PD  T+P L K+ 
Sbjct: 91  PYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC 150

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
             L +   G+Q H  + + GF S  ++QN+L++MY+  G +  A KVF+ M  + +V+W 
Sbjct: 151 GVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWA 207

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I  +A    P+EA+ LFR M    V+P+  T+V++ +ACA    L   ++ H Y+ + 
Sbjct: 208 TMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDET 267

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+  +  + +AL+D Y KCG    A+ +F +M ++N   W+ ++ G   +   +EAL LF
Sbjct: 268 GIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLF 327

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDL 390
            EM++ G    +VT   +L AC+H G ++ G     Y ++ K E  +         +VD+
Sbjct: 328 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA----LVDM 383

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGH 428
             + G ++ A    Q   MP   V+ W  L+    + G 
Sbjct: 384 YAKCGSIESAMRVFQE--MPEKDVMTWTALIVGLAMCGQ 420


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/637 (42%), Positives = 383/637 (60%), Gaps = 66/637 (10%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           C +LL  C S K+ LKQVHA+  + G+  +    GK L+++ VS+   + YA  +F H  
Sbjct: 8   CSSLLTNCRSLKN-LKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFP 66

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGE 163
           +P++F  NT+IRG AES  P  ++  + +M      P D+ ++ FLLKA +    +  G 
Sbjct: 67  NPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGI 126

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN------ 217
           Q H  AI +G ++ +FV  +LV MY+  G V  A KVFE M E ++VAWN+V+       
Sbjct: 127 QLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCG 186

Query: 218 -------------------------GFASNGKPNEALTLFREMASE----------GVEP 242
                                    G+   G+   A  LF EM  +          G   
Sbjct: 187 DVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAH 246

Query: 243 DGY---------------------TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G+                     ++    SACA+ GA+  G+  H ++ K G    V+V
Sbjct: 247 NGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSV 306

Query: 282 NNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           NNALLD YSKCG +  A+ VF  M  KR+ VSW++++ GLA++G+G+EA++LF EME  G
Sbjct: 307 NNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESG 366

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P  + F+ +LYACSH G++++G+ YF +MKD Y I P IEH+GCMVDL GRAG + +A
Sbjct: 367 IRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKA 426

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           YE+I +M + P A+IWRTLLGAC+IHG+  +AE  +  L +L+P +SGD+VLLSN+YA  
Sbjct: 427 YEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVA 486

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W +V  VRR+M  +R+ KTPG S++E+   ++ F  G+  +  TEE +  L EI  KL
Sbjct: 487 GKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKL 546

Query: 521 KLEG-YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           ++EG Y+P   +V  DIE+EEKED++S HSEK+A+AF +     G+ +R+VKNLRVC DC
Sbjct: 547 RVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDC 606

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H  +KLISKVY  EIVVRDRSRFH FK G CSCRDYW
Sbjct: 607 HTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/559 (45%), Positives = 362/559 (64%), Gaps = 4/559 (0%)

Query: 59   LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRG 117
            LK+ HA    +G+  ++  L K+   AI+ +SF  +  A  +F  + +P  F WN MIRG
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKF---AIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRG 792

Query: 118  YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +A     L ++ELYSKM   G+KPD   +PF LK+ + L+D++ G+  H   +  G  + 
Sbjct: 793  FATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSND 852

Query: 178  VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            +FV  +LV MYA  G ++ A  VF+ M+ RDLV+W S+I+G+A NG  +E L  F  M S
Sbjct: 853  LFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 238  EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             GV P+  +++S+  AC  LGAL  G   H+YV + G   ++ V  A++D YSKCG +  
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 972

Query: 298  AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            A+ +F E   ++ V WS ++    ++G G++A++LF +M   G  P  VTF  VL ACSH
Sbjct: 973  ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 358  CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
             G+++EG  YF+ M +E+ I  K+ ++ CMVDLLGRAG + +A + I+NM + P+A IW 
Sbjct: 1033 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092

Query: 418  TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            +LLGAC IH +  +AE     L  L+P H+G +VLLSN+YA + RW  V++VR+ M +  
Sbjct: 1093 SLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRG 1152

Query: 478  VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
              K  G SLVE  N+V +F +GDRSHPQ E+++A L E+   +K  GYVP T+ V  DIE
Sbjct: 1153 ANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIE 1212

Query: 538  EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
            EE KE ALSYHSE++AIAF L+NT+PGT +R+ KNLR+C DCH AIKLISK+ +R I+VR
Sbjct: 1213 EEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVR 1272

Query: 598  DRSRFHHFKDGHCSCRDYW 616
            D  RFH F+DG CSC DYW
Sbjct: 1273 DMHRFHRFEDGVCSCGDYW 1291



 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 179/505 (35%), Positives = 285/505 (56%), Gaps = 14/505 (2%)

Query: 36  NPIT--SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFP 92
           +P+T  SVV  C  LL V A S      VH   IR     + P +   L +YA       
Sbjct: 205 DPVTLVSVVSACAQLLNVKAGS-----CVHGLVIRREFDGDLPLVNSLLNLYAKTGCE-- 257

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
              A N+FS + + ++ +W+TMI  YA +     A+ L+ +M     +P++ T    L+A
Sbjct: 258 -KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 316

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   ++  G++ H +A+  GFE    V  +L+ MY       +A  +F+ + ++D+V+W
Sbjct: 317 CAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSW 376

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++++G+A NG   +++ +FR M S+G++PD   +V + +A +ELG        H YV +
Sbjct: 377 VALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVR 436

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G + NV V  +L++ YSKCG +  A ++F+ M  R+ V WS+++    ++G G EALE+
Sbjct: 437 SGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEI 496

Query: 333 FKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           F +M     V P  VTF+ +L ACSH G+V+EG   F RM  +Y + P  EHFG MVDLL
Sbjct: 497 FDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLL 556

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GR G + +A + I  M +P    +W  LLGAC IH +  + E A   L  L+P H+G Y+
Sbjct: 557 GRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYI 616

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           LLSN+YA + +W NV E+ RT +KER +KK  G S+VE+   V  F   DR HP +++I+
Sbjct: 617 LLSNIYAVDGKWDNVAEL-RTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIY 675

Query: 511 AMLAEITKKLKLEGYVPRTENVFAD 535
            +L ++  ++  E Y+P  + +  D
Sbjct: 676 ELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 162/324 (50%), Gaps = 10/324 (3%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL--IYAIVSLSFPMSYAHNIFSHV 103
           + L Q C + +  + Q+H+   + G+ L++      L  +YA  +    +  A  +F   
Sbjct: 8   VDLFQACNNGR-SVSQLHSQVFKTGI-LHDTFFATKLNSLYAKCA---SLQAARKVFDET 62

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
             PN+  WN+ +R Y         + L+  M   +G  PD  T P  LKA + L  + +G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 163 EQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           +  H  A +N    S +FV ++LV +Y+  G + +A KVFE     D V W S++ G+  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 222 NGKPNEALTLFREMA-SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           N  P EAL LF +M   + V  D  T+VS+ SACA+L  +  G   H  V +     ++ 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           + N+LL+ Y+K G    A  +F +M +++ +SWST++   A N    EAL LF EM    
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 341 FVPGEVTFVGVLYACSHCGMVDEG 364
           F P  VT V  L AC+    ++EG
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEG 326


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/515 (48%), Positives = 344/515 (66%), Gaps = 7/515 (1%)

Query: 107 NIFTWNTMIRGYAESANP---LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           + F  NT+IR +A S  P   L A   +  M  S   P+  T+PFLLKA +    V  G 
Sbjct: 107 DAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GV 164

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAWNSVINGFAS 221
           Q H+ A++ GF +  +V N+L+HMY+ FG   + DA  VF+ M++   V W+++I G+  
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G  ++A+ LFREM + GV PD  TM+ + +A A+LGAL L R    +V K G+  +V +
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTL 284

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL+D  +KCG +  A  VF+ M++R  VSW++++  LA+ G GKEA+ +F+EM+  G 
Sbjct: 285 CNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGV 344

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P +V F+GVL ACSH GMVDEG+ YF+ M+  YGI PKIEH+GCMVD+ GRAG+V++A 
Sbjct: 345 RPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAM 404

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E++  M M PN +IWRTL+ AC  HG   + E     LL   P H  +YV+LSN+YA  +
Sbjct: 405 EFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTR 464

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW    E+RR M K  +KK PG SLVEL   V EF  GD SHPQ +EI+ M+ E+ ++L+
Sbjct: 465 RWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELR 524

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             G++  T  V  D++EE+KE AL +HSEK+AIAF+L+ T PGT VRVVKNLRVC+DCH 
Sbjct: 525 RAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHA 584

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           AIK IS VY+REI+VRDRSRFH FK+G CSC D+W
Sbjct: 585 AIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 10/283 (3%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDP 106
           LL+ CA+      Q HA +++ G   +       + +Y+     F +  A N+F  +   
Sbjct: 152 LLKACAAFPGVGVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEF-LGDARNVFDRMAKS 210

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           +  TW+ MI GY  S     AV L+ +M  SG++PD  T   +L A + L  + +     
Sbjct: 211 SAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVG 270

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
               + G    V + N+L+   A  G +  A  VF+ M ER +V+W SVI+  A  G+  
Sbjct: 271 RFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGK 330

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV----GLSDNVNVN 282
           EA+ +F EM + GV PD    + + +AC+  G +  G   + Y   +    G+   +   
Sbjct: 331 EAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEG---YGYFESMRMAYGIDPKIEHY 387

Query: 283 NALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
             ++D + + G++  A     +M  K N + W TLV     +G
Sbjct: 388 GCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHG 430


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/573 (43%), Positives = 358/573 (62%), Gaps = 18/573 (3%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS-LSFPMSYAHNIFSHVQ 104
           I+L+  C + K +LKQ+ A++I+     N   + K++ +   +     M +AH +F  + 
Sbjct: 30  ISLIPKCTTLK-ELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQIT 88

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            PNI  +NTM RGYA   +PL  +  + +                L+ +SK+  +  G+Q
Sbjct: 89  QPNIVLFNTMARGYARLNDPLRMITHFRR---------------CLRLVSKVKALAEGKQ 133

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H  A++ G    ++V  +L++MY A G +  + +VF+ + E  +VA+N++I   A N +
Sbjct: 134 LHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNR 193

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            NEAL LFRE+   G++P   TM+ + S+CA LG+L LGR  H YV K G    V VN  
Sbjct: 194 ANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTT 253

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG +  A  VFR+M KR+  +WS ++V  A +G G +A+ +  EM+     P 
Sbjct: 254 LIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPD 313

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E+TF+G+LYACSH G+V+EGF YF  M +EYGI+P I+H+GCMVDLLGRAG + +AY++I
Sbjct: 314 EITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFI 373

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             + + P  ++WRTLL AC+ HG+  + +     + +L+  H GDYV+ SNL A   +W 
Sbjct: 374 DELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWD 433

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +V  +R+TM+ +   K PG S +E+ N V EFF G+  H  +  +H  L E+ K+LK  G
Sbjct: 434 DVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAG 493

Query: 525 YVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           YVP T  VF AD+E+EEKE  L YHSEK+AI F L+NT PGT +RVVKNLRVC DCH A 
Sbjct: 494 YVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAA 553

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K IS ++ R+I++RD  RFHHFKDG CSC DYW
Sbjct: 554 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/560 (42%), Positives = 360/560 (64%), Gaps = 6/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           K +HA+ IR+    NN  +G     A++ +      +  A  +F+ +    + +W  MI 
Sbjct: 215 KAMHAYVIRNS---NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G   S       +L+ +M    I P+  T   L+        +++G+Q H+  +RNGF  
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + +  +LV MY     +++A  +F+    RD++ W ++++ +A     ++A  LF +M 
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           + GV P   T+VSL S CA  GAL LG+  H+Y+ K  +  +  +N AL+D Y+KCG I 
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDIN 451

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA R+F E   R+   W+ ++ G A++G+G+EAL++F EME  G  P ++TF+G+L+ACS
Sbjct: 452 AAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V EG   F++M   +G++P+IEH+GCMVDLLGRAGL+ +A+E I++M + PN ++W
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 571

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             L+ AC +H +  + E+A + LL++EP++ G  VL+SN+YA   RW +   VR+TM   
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 631

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            +KK PGHS++E+   V EF MGD+SHPQ   I+ MLAE+ +KL   GYVP T  V  +I
Sbjct: 632 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI 691

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +EEEKE AL+YHSEK+A+AF L++TAP TP+R+VKNLRVC DCH A KL+SK+Y R I+V
Sbjct: 692 DEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIV 751

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR+RFHHF++G+CSC DYW
Sbjct: 752 RDRNRFHHFREGYCSCGDYW 771



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 183/375 (48%), Gaps = 12/375 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++H F ++ G+   +  +G  L+      +  + YA  +F  + + ++ +W+TMIR  +
Sbjct: 114 KEIHGFVLKKGLD-RDVFVGNALMLMYGECAC-VEYARLVFDKMMERDVVSWSTMIRSLS 171

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +    +A+EL  +M+   ++P       ++   +  A++RMG+  H+  IRN     + 
Sbjct: 172 RNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 231

Query: 180 V--QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V    +L+ MYA  GH+  A ++F  ++++ +V+W ++I G   + +  E   LF  M  
Sbjct: 232 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           E + P+  TM+SL   C   GAL LG++ H Y+ + G S ++ +  AL+D Y KC  I  
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRN 351

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ +F   + R+ + W+ ++   A      +A  LF +M   G  P +VT V +L  C+ 
Sbjct: 352 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAV 411

Query: 358 CGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
            G +D G    SY  + + E   +        +VD+  + G +  A       +   +  
Sbjct: 412 AGALDLGKWVHSYIDKERVEVDCILNT----ALVDMYAKCGDINAAGRLFIEAI-SRDIC 466

Query: 415 IWRTLLGACTIHGHS 429
           +W  ++    +HG+ 
Sbjct: 467 MWNAIITGFAMHGYG 481



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 146/284 (51%), Gaps = 16/284 (5%)

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           P +LKA  +++  ++G++ H   ++ G +  VFV N+L+ MY     V+ A  VF+ M E
Sbjct: 98  PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 157

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD+V+W+++I   + N + + AL L REM    V P    MVS+ +  A+   + +G+  
Sbjct: 158 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 267 HTYVWKVGLSDNVNV--NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           H YV +   ++++ V    ALLD Y+KCG +  A+++F  + ++  VSW+ ++ G   + 
Sbjct: 218 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 277

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKI 381
             +E  +LF  M+     P E+T + ++  C   G +  G    +Y  R     G    +
Sbjct: 278 RLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILR----NGFSVSL 333

Query: 382 EHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGA 422
                +VD+ G+   ++ A   ++  QN     + +IW  +L A
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQN----RDVMIWTAMLSA 373


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/602 (45%), Positives = 374/602 (62%), Gaps = 16/602 (2%)

Query: 28  HSTPASQENPITSVVRK----CITLLQVCASSKHKLKQVHAFSIRHGV---PLNNPDLGK 80
           ++T A   NP  S  R     C+ LL+  +S+   L Q  AF ++ G+   PL    L  
Sbjct: 13  YTTTAPASNPTASPSRAAEQHCLRLLER-SSTPASLLQSFAFLLKSGLHSNPLVVTRLFA 71

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL---AVELYSKMHVS 137
               A  +L  P+    ++       + F  NT+IR +  S  P     A   +  M  +
Sbjct: 72  ASASAAPALLEPL--VSSLLGPSLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRA 129

Query: 138 GIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG--HV 194
            + P+  T+PFLLK+ + L     +G Q H+ A++ GF +  +V N+L+HMY+ FG   +
Sbjct: 130 AVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFL 189

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            DA  VFE M     V W+++I G+   G  ++A+ LFR M   GV PD  T++ + +A 
Sbjct: 190 GDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAA 249

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A+LGAL L R    +V + G+  +V + NAL+D  +KCG +  A  VF  M +R  VSW+
Sbjct: 250 ADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWT 309

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           +++  LA+ G GKEA+ +F+EM+  G +P +V F+GVL ACSH GMVDEG  YF  MK E
Sbjct: 310 SVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTE 369

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YGI PKIEH+GCMVD+ GRAG+V+Q  E+++ M M PN +IWRTL+ AC  HG   + E 
Sbjct: 370 YGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGES 429

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
               LL   P H  +YV+LSN+YA  QRW    E+RR M K  +KK PG SLVEL   V 
Sbjct: 430 ITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVH 489

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           EF  GD SHPQ +EI+ M+ E++++L+  G++  T  V  D++EE+KE AL +HSEK+AI
Sbjct: 490 EFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAI 549

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF+L+ T PGT VRVVKNLRVC+DCH AIK IS+VY+REIVVRDRSRFH FKDG CSC+D
Sbjct: 550 AFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKD 609

Query: 615 YW 616
           +W
Sbjct: 610 FW 611


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/610 (42%), Positives = 382/610 (62%), Gaps = 40/610 (6%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV----SLSFP---MSYAHN 98
           + LLQ C SS   LK +H F +R  +  +     + L  A+     +   P   + YA+ 
Sbjct: 16  LALLQSC-SSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYG 74

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IFS +Q+PN+F +N +IR ++  A P  A   Y++M  S I PD  T+PFL+KA +++  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA----------------------------- 189
           V +GEQTHS  +R GF++ V+V+NSLVHMYA                             
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAG 194

Query: 190 --AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
               G V+DA ++F+ M  R+L  W+ +ING+A N    +A+ LF  M  EGV  +   M
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           VS+ S+CA LGAL  G RAH YV K  ++ N+ +  AL+D Y +CG I  A RVF E+  
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPD 314

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           ++++SWS+++ GLAV+G   +A+  F +M   GF P ++T   VL ACSH G+VD+G   
Sbjct: 315 KDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEI 374

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           ++ MK +YGI P++EH+GC+VD+LGRAG + +A  +I  M + PNA I   LLGAC I+ 
Sbjct: 375 YENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYK 434

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           ++ +AE   + L++++P+HSG YVLLSN+YA   +W  ++ +R  M ++ VKK PG SL+
Sbjct: 435 NTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLI 494

Query: 488 ELGNRVFEFFMG-DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           E+  ++ +F MG D+ HP+  +I  +  EI  K++L GY   T + F D++EEEKE A+ 
Sbjct: 495 EIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIH 554

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
            HSEK+AIA+ ++ T  GT +R+VKNLRVC DCH A KLIS+VY RE +VRDR+RFHHF+
Sbjct: 555 MHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFR 614

Query: 607 DGHCSCRDYW 616
           +G CSCRDYW
Sbjct: 615 NGLCSCRDYW 624


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/647 (40%), Positives = 385/647 (59%), Gaps = 56/647 (8%)

Query: 15  EISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAF---SIRHGV 71
           +++ L   +KS ++  P  +     S++    T L  C    H LKQ +      I  G 
Sbjct: 5   KLNQLSSALKSTFNHKPTFKPTITLSILE---THLHNC----HNLKQFNRILSQMILTGF 57

Query: 72  PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +     + L ++  S    + Y+  IF  +++ N F WNTM+R Y +S +   A+ LY
Sbjct: 58  ISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLY 117

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRM----GEQTHSVAIRNGFESLVFVQNSLVHM 187
             M  + + PD +TYP +++A +    VR+    G++ H   ++ GF+S V+VQN+L++M
Sbjct: 118 KLMVKNNVGPDNYTYPLVVQACA----VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINM 173

Query: 188 YAAFGHVKDACKVFE----------------------------------LMSERDLVAWN 213
           YA  G+++DA K+F+                                   M E+D+V+W+
Sbjct: 174 YAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWS 233

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I+G+  NG   EAL +F EM + G+  D   +VS+ SACA L  +  G+  H  V ++
Sbjct: 234 ALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRM 293

Query: 274 GLSDNVNVNNALL----DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           G+   VN+ NAL+    D Y KCG +  A  VF  M ++   SW+ L++GLAVNG  + +
Sbjct: 294 GIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS 353

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           L++F EM+  G +P E+TF+GVL AC H G+VDEG  +F  M +++GI P ++H+GCMVD
Sbjct: 354 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 413

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAGL+ +A + I++M M P+   W  LLGAC  HG + + E     L++L+P H G 
Sbjct: 414 LLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGF 473

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           +VLLSN++A +  W +V EVR  M ++ V KTPG SL+E    V EF  GD++HP   ++
Sbjct: 474 HVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKV 533

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
             ML E+ K+LK+EGY P T  V  DI+EEEKE  L  HSEK+AIAF L+  +P TP+R+
Sbjct: 534 EGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRI 593

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLR+C DCH A KLISK Y+REIVVRDR RFH+FK+G CSC DYW
Sbjct: 594 MKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/636 (41%), Positives = 381/636 (59%), Gaps = 66/636 (10%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++LL  C+S K   KQ+HA   + G+  +    GK L++  +++S  + YA  +F H  +
Sbjct: 6   VSLLSKCSSLK-PTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPN 64

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQ 164
           P+ F  NT+IR  + S  PL ++  + ++     + PD+ T+ F LKA++    +R G Q
Sbjct: 65  PDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQ 124

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE------------------ 206
            HS A R+GF++ +FV  +L+ MYA  G    A +VF+ MSE                  
Sbjct: 125 LHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGD 184

Query: 207 -------------RDLVAWNSVINGFASNGKPNEALTLF--------------------- 232
                        R+L +WN ++ G+A  G+   A  +F                     
Sbjct: 185 VEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHN 244

Query: 233 ----------REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
                     RE+  E +  +  ++  + SACA+ GA   G+  H +V K G     +VN
Sbjct: 245 GCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVN 304

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           NAL+D YSKCG +  A+ VF+ M   R+ VSW++++ GLA++G G+EA++LF EME  G 
Sbjct: 305 NALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGV 364

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +TF+ +LYACSH G+V+EG   F +MK+ YGI P IEH+GCMVDL GRA  +++AY
Sbjct: 365 RPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAY 424

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E+I  M + PNA+IWRTLLGAC+IHG+  +AE+ ++ L +++P +SGD+VLLSN+YA   
Sbjct: 425 EFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAG 484

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           +W +V  +RRTM +  +KKTPG S++E+   ++ F  G++ +  TEE H  L EI  +L+
Sbjct: 485 KWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLR 544

Query: 522 LE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
            E GY P+  +V  DIEEEEKED++S HSEK+A AF +     G  +R+VKNLRVC DCH
Sbjct: 545 TEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCH 604

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             +KLISKVY  EI+VRDRSRFH FKDG CSCRDYW
Sbjct: 605 TVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/516 (49%), Positives = 343/516 (66%), Gaps = 6/516 (1%)

Query: 107 NIFTWNTMIRGYAESANP---LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR-MG 162
           + F  NT+IR +A S  P   L A   +  M  S + P+  T+PFLLKA + L     +G
Sbjct: 92  DAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVG 151

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAWNSVINGFA 220
            Q H+ A++ GF +  +V N+L+HMY+ FG   + DA  VF+ M +  +V W+++I G+ 
Sbjct: 152 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYV 211

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
             G  ++A+ LFREM + GV PD  T++ + +A A+LGAL L R    +V + G+  +V 
Sbjct: 212 RGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVT 271

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           + NAL+D  +KCG +  A  VF+ M +R  VSW++++  LA+ G GKEA+ +F+ M+  G
Sbjct: 272 LCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAG 331

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P +V F+GVL ACSH GMVDEG+ YF  MK EYGI PKIEH+GCMVD+ GRAG+V++A
Sbjct: 332 VRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERA 391

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            E+I  M M PN +IWRTL+ AC  HG   + E     LL   P H  +YV+LSN+YA  
Sbjct: 392 MEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALT 451

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
           QRW    E+RR M K  +KK PG SLVEL   V EF  GD SHPQ +EI+ M+ E+ ++L
Sbjct: 452 QRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMAREL 511

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K  G++  T  V  D++EE+KE AL +HSEK+AIAF+L+ T PGT VRVVKNLRVC+DCH
Sbjct: 512 KHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCH 571

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            AIK IS VY+REI+VRDRSRFH FK+G CSC D+W
Sbjct: 572 AAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 4/267 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           Q HA +++ G   +       + +Y+     F +  A N+F  +   ++ TW+ MI GY 
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMYSCFGGEF-LGDARNVFDRMDKSSVVTWSAMIGGYV 211

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  AV L+ +M  SG++PD  T   +L A + L  + +         R G    V 
Sbjct: 212 RGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVT 271

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           + N+L+   A  G V  A  VF+ M ER +V+W SVI+  A  G+  EA+ +F  M + G
Sbjct: 272 LCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAG 331

Query: 240 VEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           V PD    + + +AC+  G +  G     +   + G+   +     ++D + + G++  A
Sbjct: 332 VRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERA 391

Query: 299 QRVFREM-RKRNAVSWSTLVVGLAVNG 324
                 M  K N + W TLV     +G
Sbjct: 392 MEFIHTMPMKPNPIIWRTLVAACRAHG 418


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/585 (43%), Positives = 364/585 (62%), Gaps = 25/585 (4%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AH 97
           V++ C  LL +    K     +H   ++ G      D   ++  ++V L     Y   AH
Sbjct: 118 VLKACARLLDLQLGVK-----IHTLVVKGGF-----DCDVFVKTSLVCLYAKCGYLEDAH 167

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F  + D N+ +W  +I GY        A++++ ++    + PD+ T   +L A ++L 
Sbjct: 168 KVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLG 227

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           D+  GE  H   +  G    VFV  SLV MYA  G+++ A  VF+ M E+D+V+W ++I 
Sbjct: 228 DLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+A NG P EA+ LF +M  E V+PD YT+V + SACA LGAL LG       W  GL D
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE------WVSGLVD 341

Query: 278 ------NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
                 N  +  AL+D Y+KCG +  A  VF+ M++++ V W+ ++ GLA+NG+ K +  
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFG 401

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF ++E  G  P   TF+G+L  C+H G+VDEG  YF  M   + + P IEH+GCMVDLL
Sbjct: 402 LFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLL 461

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAGL+ +A++ I+NM M  NA++W  LLGAC IH  + +AE+A   L++LEP +SG+YV
Sbjct: 462 GRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYV 521

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+Y+   +W    +VR +M ++R++K PG S +E+   V EF +GD+ HP +E+I+A
Sbjct: 522 LLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYA 581

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L E+TKK+K+ GYVP T+ V  DIEEEEKE  L  HSEK+AIAF L++  P   +RVVK
Sbjct: 582 KLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVK 641

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH+AIKLIS +  REI VRD +RFH F++G CSC DYW
Sbjct: 642 NLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 206/355 (58%), Gaps = 5/355 (1%)

Query: 81  YLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           YL+  I+  SF  S   Y   +F  ++ PNIF WNTMIRG   +     A+E Y  M   
Sbjct: 47  YLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSE 106

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G  P+  T+PF+LKA ++L D+++G + H++ ++ GF+  VFV+ SLV +YA  G+++DA
Sbjct: 107 GFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDA 166

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            KVF+ + ++++V+W ++I+G+   GK  EA+ +FR +    + PD +T+V + SAC +L
Sbjct: 167 HKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQL 226

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           G L  G   H  + ++G+  NV V  +L+D Y+KCG +  A+ VF  M +++ VSW  ++
Sbjct: 227 GDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMI 286

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G A+NG  KEA++LF +M+     P   T VGVL AC+  G ++ G  +   + D    
Sbjct: 287 QGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEF 345

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +        ++DL  + G + +A+E  + M    + V+W  ++    ++G+  I+
Sbjct: 346 LYNPVLGTALIDLYAKCGSMSRAWEVFKGM-KEKDRVVWNAIISGLAMNGYVKIS 399


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/557 (44%), Positives = 350/557 (62%), Gaps = 2/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + V A++++ G+  +   L   LI+   S    ++ A  +F   ++  +  WN ++  Y 
Sbjct: 140 RGVQAYAVKRGLVADRFVLSS-LIHMYASCG-DVAAARLVFDAAEESGVVMWNAIVAAYL 197

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++ + +  VE++  M   G+  D  T   ++ A  ++ D ++G+         G      
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPK 257

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           +  +L+ MYA  G +  A ++F+ M  RD+VAW+++I+G+    +  EAL LF EM    
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR 317

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           VEP+  TMVS+ SACA LGAL  G+  H+YV +  LS    +  AL+DFY+KCG I  A 
Sbjct: 318 VEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAV 377

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
             F  M  +N+ +W+ L+ G+A NG G+EALELF  M   G  P +VTF+GVL ACSH  
Sbjct: 378 EAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSC 437

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG  +F  M  +YGI P++EH+GCMVDLLGRAGLV +AY++I+ M + PNAVIWR L
Sbjct: 438 LVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRAL 497

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L +C +H +  I E A   ++ L P HSGDYVLLSN+YA   +W +   VR+ M    ++
Sbjct: 498 LSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIE 557

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           KTPG SL+EL   VFEFF  D  HP+  EI+  + E+  ++K+ GYVP T +V  ++EE 
Sbjct: 558 KTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEER 617

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE ++S+HSEK+AIAF L+   PG  +R+ KNLRVCADCH A KLISKVY REIVVRDR
Sbjct: 618 EKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDR 677

Query: 600 SRFHHFKDGHCSCRDYW 616
           + FHHFKDG CSC DYW
Sbjct: 678 NIFHHFKDGTCSCNDYW 694



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 209/422 (49%), Gaps = 18/422 (4%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFT--WNTMIR 116
           L Q+HA  I+ G    +      L+ A  +    + YA ++F     P + T  +N ++R
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 117 GYAESANPLLAVELYSKM-HVSGIKP-DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
            +  + +P  A+ L+ +M H +   P D HT    LK+ S++  + +G    + A++ G 
Sbjct: 92  AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            +  FV +SL+HMYA+ G V  A  VF+   E  +V WN+++  +  NG   E + +F+ 
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKG 211

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   GV  D  T+VS+ +AC  +G   LG+    +V + GL+ N  +  AL+D Y+KCG 
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGE 271

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A+R+F  M+ R+ V+WS ++ G       +EAL LF EM++    P +VT V VL A
Sbjct: 272 IGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSA 331

Query: 355 CSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           C+  G ++ G    SY +R +     +        +VD   + G +  A E  ++M +  
Sbjct: 332 CAVLGALETGKWVHSYVRRKRLSLTTILGT----ALVDFYAKCGCIDDAVEAFESMPV-K 386

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
           N+  W  L+     +G    A    S++ +  +EP    D   +  L A     L V+E 
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSMREAGIEPT---DVTFIGVLMACSHSCL-VEEG 442

Query: 470 RR 471
           RR
Sbjct: 443 RR 444


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/640 (41%), Positives = 382/640 (59%), Gaps = 69/640 (10%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL--IYAIVSLSFPMSYAHNIF 100
           +K ++LLQ  A+  +++ Q+HA  I+  +  NN  L K L  ++A  S +  + YA ++F
Sbjct: 4   KKVMSLLQ-NATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSAN-DLLYARSVF 61

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELY----------------------------- 131
             +  P+ F WNTMIR Y  S NP  ++ L+                             
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDP 121

Query: 132 ---SKMHVS----GIKPDTHTYPFLLKAISKLAD-------------------------- 158
               K+H      G+  D      L++  +K  D                          
Sbjct: 122 GNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEY 181

Query: 159 VRMGE--QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           VR+GE    H +  R     LV   N+++H +A+ G V  A K+F+   ERDL++W+S+I
Sbjct: 182 VRVGEINLAHDLFDRMPERDLV-SWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMI 240

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
             +A   + NEAL LF EM    V PD  TMVS+ SAC ++GAL +G+  H  + +  + 
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE 300

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            ++ +  +L+D Y+KCG I  + RVF  M  R+  +WS +++GLA +GFG+ AL+ F +M
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                 P +VTF+GVL ACSH G+VDEG++YF  M   Y + PKIEH+GC+VD+LGRAG 
Sbjct: 361 ISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGR 420

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++A E I++M   P+A++WR LLGAC I+ +  IAE A   LL+LEP   G+YVLLSN+
Sbjct: 421 LQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNI 480

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           Y+  + W  V  VRR M    ++K PG S +E+ N V EF  GD+SHP++++I  ML+EI
Sbjct: 481 YSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEI 540

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
           T +LK  GY P T +V  D +E+EKE+AL++HSEK+AIAF L++TAPG+ +R+VKNLRVC
Sbjct: 541 TARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVC 600

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH+AIKLIS+ Y R I+VRDR+RFHHF +G CSC+DYW
Sbjct: 601 DDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/555 (45%), Positives = 346/555 (62%), Gaps = 35/555 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + Y+  +F   Q+P++F W  +I G+A       A+  Y++M   G++P+  T+  +L  
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL-- 82

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK----------------- 195
             KL  +  G+  HS A++ GF+S ++V+  L+ +YA  G V                  
Sbjct: 83  --KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSL 140

Query: 196 -------------DACKV-FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
                        DA +V F+ M ERD V WN +I+G+  NG PNEAL LFR M     +
Sbjct: 141 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 200

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+  T++S+ SAC +LGAL  GR  H+Y+   G+  NV+V  AL+D YSKCG +  A+ V
Sbjct: 201 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 260

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F ++  ++ V+W++++VG A+ GF +EAL+LFK M   G  P  +TF+G+L AC H G V
Sbjct: 261 FDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 320

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            EG+  F +MKDEYGI PKIEH+GCMV+LLGRAG V+QAYE ++NM + P+ V+W TLLG
Sbjct: 321 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 380

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC +HG  A+ E     L+     +SG Y+LLSN+YA    W  V  +R  M    VKK 
Sbjct: 381 ACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE 440

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
           PG S +E+ N+V EF  G  +HP+ +EI+ ML EI   LK  GY P+T+ V  DI E EK
Sbjct: 441 PGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEK 500

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           E +L  HSEK+AIAF L+NT PGT +++VKNLRVCADCH   KLISK+  R+IVVRDR+R
Sbjct: 501 ERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNR 560

Query: 602 FHHFKDGHCSCRDYW 616
           FHHF +G CSC DYW
Sbjct: 561 FHHFVNGSCSCGDYW 575



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 37/282 (13%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           + L   YA+ G +  +  +F       +  W ++I+G A  G   +AL  + +M ++GVE
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +T  S+   C     +  G+  H+   K+G   ++ V   LLD Y++ G +++AQ++
Sbjct: 73  PNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL 128

Query: 302 FRE-------------------------------MRKRNAVSWSTLVVGLAVNGFGKEAL 330
           F                                 M +R+ V W+ ++ G   NG   EAL
Sbjct: 129 FDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEAL 188

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            LF+ M      P EVT + VL AC   G ++ G  +     +  GI   +     +VD+
Sbjct: 189 VLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDM 247

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             + G ++ A   + + +   + V W +++    + G S  A
Sbjct: 248 YSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMXGFSQEA 288


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/557 (43%), Positives = 351/557 (63%), Gaps = 2/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + + A++++ G+  +   L   LI+   S    ++ A  +F  V++  +  WN +I  Y 
Sbjct: 139 RGIQAYAVKRGLMADRFVLSS-LIHMYASCR-DVAAAQLLFDAVEENGVVMWNAIITAYM 196

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++ N +  VE++  M   G+  D  T   ++ A  ++ D ++G+         G      
Sbjct: 197 KNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRN 256

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           +  +L+ MYA  G +  A ++F+ M  RD+VAW+++I+G+    +  EAL LF EM    
Sbjct: 257 LMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAE 316

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           VEP+  TMVS+ SACA LGAL  G+  H+Y+ +  LS  + +  AL+DFY+KCG I  A 
Sbjct: 317 VEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAV 376

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
             F  M  +N+ +W+ L+ G+A NG G+EALELF  M      P +VTF+GVL ACSH  
Sbjct: 377 EAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSC 436

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG  +F  M  +YGI P+ EH+GC+VDLLGRAGL+ +AY++I+ M + PNAVIWR L
Sbjct: 437 LVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRAL 496

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L +C +H +  I E A   ++ L P HSGDY+LLSN+YA   +W N   +R+ M    ++
Sbjct: 497 LSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIE 556

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           KTPG SL+EL   V EFF  D  HPQ +EI+  + E+  ++K+ GY+P T +V  +++E 
Sbjct: 557 KTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEH 616

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE ++S+HSEK+AIAF L+   PG  +R+ KNLRVC DCH A KLISKVY+REIVVRDR
Sbjct: 617 EKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDR 676

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHFKDG CSC DYW
Sbjct: 677 NRFHHFKDGTCSCNDYW 693



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 193/375 (51%), Gaps = 11/375 (2%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFT--WNTMIR 116
           L Q+HA  I+ G    +P     L+ A  +    + YA ++F     P + T  +N ++R
Sbjct: 32  LPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 117 GYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
               + +P  A+ L+ +M  V+ + PD HT    LK+ S++  + +G    + A++ G  
Sbjct: 92  ALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLM 151

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           +  FV +SL+HMYA+   V  A  +F+ + E  +V WN++I  +  NG   E + +F+ M
Sbjct: 152 ADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGM 211

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
              GV  D  T+VS+ +AC  +G   LG+    YV + GL  N N+  AL+D Y+KCG +
Sbjct: 212 LEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGEL 271

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+R+F  M+ R+ V+WS ++ G       +EAL LF EM++    P +VT V VL AC
Sbjct: 272 GKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSAC 331

Query: 356 SHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
           +  G ++ G    SY +R +    I+        +VD   + G +  A E  ++M +  N
Sbjct: 332 AVLGALETGKWVHSYIRRKRLSLTIILGT----ALVDFYAKCGCIDDAVEAFESMPV-KN 386

Query: 413 AVIWRTLLGACTIHG 427
           +  W  L+     +G
Sbjct: 387 SWTWTALIKGMATNG 401


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/600 (40%), Positives = 375/600 (62%), Gaps = 12/600 (2%)

Query: 18  DLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD 77
           DLP   +S        +E     +V+KC +L         + KQVH   ++ G+ L++  
Sbjct: 18  DLP---QSSSELNLKQKEQEYLCLVKKCKSL--------EEFKQVHVQILKFGLFLDSFC 66

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
               L    +S    M YA +IF  + +P  F +NTMIRGY  + N   A+ LY+ M   
Sbjct: 67  SSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQR 126

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            ++PD  TYP +LKA ++LA ++ G Q H    + G E  V+VQNSL++MY     ++ +
Sbjct: 127 EVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMS 186

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAE 256
           C +F  M ++ + +W+++I   AS     E L LF +M+ EG    +   +V++ SAC  
Sbjct: 187 CAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTH 246

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGA  LGR AH  + K     NV V  +L+D Y KCG +     +F+ M ++N +S+S +
Sbjct: 247 LGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVI 306

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + GL ++G+G++AL++F EM   G  P +VT+V VL ACSH G+VDEG   F +MK EY 
Sbjct: 307 ISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYR 366

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           I P ++H+GCMVDL GRAGL+++A++ +Q+M +  N V+WR+LL AC +H +  + EIA 
Sbjct: 367 IEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAA 426

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEF 496
             L +L   +  DY++LSN+YA  Q+W N  ++R  M+   + +TPG+SLVE+ ++V++F
Sbjct: 427 ENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKF 486

Query: 497 FMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF 556
              D+S+ ++  I+ M+ ++  +L+ EGY+P T  V  D++EEEK + L  HS+K+AIAF
Sbjct: 487 VSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAF 546

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L++T+ G+ +R+++NLR+C DCH   KL+S +Y REI VRDR+RFHHFKDG+CSCRDYW
Sbjct: 547 ALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 368/574 (64%), Gaps = 6/574 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHV 103
           ++  CA+ +  L  +Q+H+ +IRHG+ L+   +G  LI  YA  S+   M  A  IF  +
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQI 335

Query: 104 QDPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            D N+F+W  MI GY +       A++L+  M ++ + P+  T+   LKA + LA +R+G
Sbjct: 336 LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIG 395

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           EQ  + A++ GF S+  V NSL+ MYA  G + DA K F+++ E++L+++N+VI+ +A N
Sbjct: 396 EQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKN 455

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
               EAL LF E+  +G+    +T  SL S  A +G +  G + H  V K GL  N +V 
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  YS+CG I +A +VF +M  RN +SW++++ G A +GF  +ALELF +M   G  
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVR 575

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P EVT++ VL ACSH G+V+EG+ +FK M  E+G++P++EH+ C+VD+LGR+G + +A +
Sbjct: 576 PNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQ 635

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +I +M    +A++WRT LGAC +HG+  + + A   +++ EP     Y+LLSNLYA   +
Sbjct: 636 FINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISK 695

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W  V  +R+ M ++ + K  G S VE+ N+V +F++GD SHP+  EI+  L  ++ K+K 
Sbjct: 696 WDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKK 755

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GYVP  + V  D+EEE+KE  L  HSEKIA+AF L++T+   P+RV KNLR+C DCH A
Sbjct: 756 LGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSA 815

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK IS    REI+VRD +RFHH KDG CSC +YW
Sbjct: 816 IKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 182/375 (48%), Gaps = 6/375 (1%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           +  F I+ G   ++  +G  LI   V     +  A  +F  + + N  TW  MI    + 
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A++L+  M  SG +PD  T   ++ A + +  + +G+Q HS AIR+G      V 
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 182 NSLVHMYAAF---GHVKDACKVFELMSERDLVAWNSVINGFASNGKPN-EALTLFREMAS 237
             L++MYA     G +  A K+F+ + + ++ +W ++I G+   G  + EAL LFR M  
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             V P+ +T  S   ACA L AL +G +  T+  K+G S    V N+L+  Y++ G I  
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD 429

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A++ F  + ++N +S++T++   A N   +EALELF E+E  G      TF  +L   + 
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G + +G     R+    G+         ++ +  R G ++ A++  ++M    N + W 
Sbjct: 490 IGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM-EDRNVISWT 547

Query: 418 TLLGACTIHGHSAIA 432
           +++     HG +  A
Sbjct: 548 SIITGFAKHGFATQA 562



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 159/326 (48%), Gaps = 16/326 (4%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W+ M+  +A +     A+  +  M  +G  P+ + +    +A S    V +G+   
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191

Query: 167 SVAIRNGF-ESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
              I+ G+ +S V V   L+ M+    G +  A KVFE M ER+ V W  +I      G 
Sbjct: 192 GFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EA+ LF +M   G EPD +T+  + SACA +  L LG++ H+   + GL+ +  V   
Sbjct: 252 AGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCC 311

Query: 285 LLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVG-LAVNGFGKEALELFKEMEIGG 340
           L++ Y+KC   G + AA+++F ++   N  SW+ ++ G +   G+ +EAL+LF+ M +  
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC----MVDLLGRAGL 396
            +P   TF   L AC++   +  G   F      + +        C    ++ +  R+G 
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFT-----HAVKLGFSSVNCVANSLISMYARSGR 426

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGA 422
           +  A +   ++L   N + + T++ A
Sbjct: 427 IDDARKAF-DILFEKNLISYNTVIDA 451



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 3/234 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+     M   G  PD  TY   LK   +     +G   H    ++  +      NSL+ 
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 187 MYAAFGHVKDACKVFELM-SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
           +Y+  G  + A  +F LM S RDL++W+++++ FA+N     AL  F +M   G  P+ Y
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKC-GIIIAAQRVFR 303
              +   AC+    +++G     +V K G L  +V V   L+D + K  G +++A +VF 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +M +RNAV+W+ ++  L   G+  EA++LF +M   G+ P   T  GV+ AC++
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACAN 283



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 7/204 (3%)

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           +NG+ ++A++    M  +G  PD  T       C    +  +G   H  + +  L  +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 281 VNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
             N+L+  YSKCG    A  +FR M   R+ +SWS +V   A N  G  AL  F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-MVDLL--GRAGL 396
           G+ P E  F     ACS    V  G S F  +  + G +      GC ++D+   GR  L
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVI-KTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLL 420
           V  A++  + M    NAV W  ++
Sbjct: 222 V-SAFKVFEKM-PERNAVTWTLMI 243


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 367/574 (63%), Gaps = 6/574 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHV 103
           ++  CA+ +  L  +Q+H+ +IRHG+ L+   +G  LI  YA  S+   M  A  IF  +
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQI 335

Query: 104 QDPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            D N+F+W  MI GY +       A++L+  M ++ + P+  T+   LKA + LA +R+G
Sbjct: 336 LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIG 395

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           EQ  + A++ GF S+  V NSL+ MYA  G + DA K F+++ E++L+++N+VI+ +A N
Sbjct: 396 EQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKN 455

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
               EAL LF E+  +G+    +T  SL S  A +G +  G + H  V K GL  N +V 
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  YS+CG I +A +VF +M  RN +SW++++ G A +GF  +ALELF +M   G  
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVR 575

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  VT++ VL ACSH G+V+EG+ +FK M  E+G++P++EH+ CMVD+LGR+G + +A +
Sbjct: 576 PNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQ 635

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +I +M    +A++WRT LGAC +HG+  + + A   +++ EP     Y+LLSNLYA   +
Sbjct: 636 FINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSK 695

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W  V  +R+ M ++ + K  G S VE+ N+V +F++GD SHP+  EI+  L  ++ K+K 
Sbjct: 696 WDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKK 755

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GYVP  + V  D+EEE+KE  L  HSEKIA+AF L++T+   P+RV KNLR+C DCH A
Sbjct: 756 LGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSA 815

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK IS    REI+VRD +RFHH KDG CSC +YW
Sbjct: 816 IKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 184/375 (49%), Gaps = 6/375 (1%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           +  F ++ G   ++  +G  LI   V     +  A  +F  + + N  TW  MI    + 
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A++L+ +M +SG +PD  T   ++ A + +  + +G+Q HS AIR+G      V 
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 182 NSLVHMYAAF---GHVKDACKVFELMSERDLVAWNSVINGFASNGKPN-EALTLFREMAS 237
             L++MYA     G +  A K+F+ + + ++ +W ++I G+   G  + EAL LFR M  
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             V P+ +T  S   ACA L AL +G +  T+  K+G S    V N+L+  Y++ G I  
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD 429

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A++ F  + ++N +S++T++   A N   +EALELF E+E  G      TF  +L   + 
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G + +G     R+    G+         ++ +  R G ++ A++  ++M    N + W 
Sbjct: 490 IGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM-EDRNVISWT 547

Query: 418 TLLGACTIHGHSAIA 432
           +++     HG +  A
Sbjct: 548 SIITGFAKHGFATQA 562



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 159/326 (48%), Gaps = 16/326 (4%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W+ M+  +A +     A+  +  M  +G  P+ + +    +A S    V +G+   
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191

Query: 167 SVAIRNGF-ESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
              ++ G+ +S V V   L+ M+    G +  A KVFE M ER+ V W  +I      G 
Sbjct: 192 GFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EA+ LF EM   G EPD +T+  + SACA +  L LG++ H+   + GL+ +  V   
Sbjct: 252 AGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCC 311

Query: 285 LLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVG-LAVNGFGKEALELFKEMEIGG 340
           L++ Y+KC   G + AA+++F ++   N  SW+ ++ G +   G+ +EAL+LF+ M +  
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC----MVDLLGRAGL 396
            +P   TF   L AC++   +  G   F      + +        C    ++ +  R+G 
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFT-----HAVKLGFSSVNCVANSLISMYARSGR 426

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGA 422
           +  A +   ++L   N + + T++ A
Sbjct: 427 IDDARKAF-DILFEKNLISYNTVIDA 451



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+     M   G  PD  TY   LK   +     +G   H    ++  +      NSL+ 
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 187 MYAAFGHVKDACKVFELM-SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
           +Y+  G  + A  +F+LM S RDL++W+++++ FA+N     AL  F +M   G  P+ Y
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKC-GIIIAAQRVFR 303
              +   AC+    +++G     +V K G L  +V V   L+D + K  G +++A +VF 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +M +RNAV+W+ ++  L   G+  EA++LF EM + G+ P   T  GV+ AC++
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACAN 283



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 7/204 (3%)

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           +NG+ ++A++    M  +G  PD  T       C    +  +G   H  + +  L  +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 281 VNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
             N+L+  YSKCG    A  +F+ M   R+ +SWS +V   A N  G  AL  F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-MVDLL--GRAGL 396
           G+ P E  F     ACS    V  G S F  +  + G +      GC ++D+   GR  L
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVV-KTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLL 420
           V  A++  + M    NAV W  ++
Sbjct: 222 V-SAFKVFEKM-PERNAVTWTLMI 243


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/608 (42%), Positives = 380/608 (62%), Gaps = 38/608 (6%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-----MSYAHNIF 100
           + LLQ C SS   LK +H F +R  +  +     + L   +   +F      + YA+ IF
Sbjct: 16  LALLQSC-SSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
           S +Q+PN+F +N +IR ++  A P  A   Y++M  S I PD  T+PFL+KA S++  V 
Sbjct: 75  SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----- 215
           +GEQTHS  +R GF++ V+V+NSLVHMYA  G +  A ++F  M  RD+V+W S+     
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 216 --------------------------INGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                                     ING+A N    +A+ LF  M  EGV  +   MVS
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           + S+CA LGAL  G RA+ YV K  ++ N+ +  AL+D + +CG I  A  VF  + + +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
           ++SWS+++ GLAV+G   +A+  F +M   GF+P +VTF  VL ACSH G+V++G   ++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            MK ++GI P++EH+GC+VD+LGRAG + +A  +I  M + PNA I   LLGAC I+ ++
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +AE   + L++++P+HSG YVLLSN+YA   +W  ++ +R  M ++ VKK PG SL+E+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494

Query: 490 GNRVFEFFMG-DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
             ++ +F MG D+ HP+  +I     EI  K++L GY   T + F D++EEEKE ++  H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+AIA+ ++ T PGT +R+VKNLRVC DCH   KLIS+VY RE++VRDR+RFHHF++G
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614

Query: 609 HCSCRDYW 616
            CSCRDYW
Sbjct: 615 VCSCRDYW 622


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/606 (42%), Positives = 375/606 (61%), Gaps = 37/606 (6%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL-GKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           I+LL  C + K ++KQ+HA  +  G+ LNNP   G+++    +  +  + YA+ + +H  
Sbjct: 13  ISLLNSCTTLK-EMKQIHAQLVVKGI-LNNPHFHGQFVATIALHNTTNLDYANKLLNHNN 70

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKM---HVSGIKPDTHTYPFLLKAISKLADVRM 161
           +P +FT N+MIR Y++S+ P  +   Y+ +   + + + PD +T+ FL++  ++L     
Sbjct: 71  NPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT 130

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK---------------------DAC-- 198
           G   H   I++GFE    VQ  LV MYA  G +                      +AC  
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190

Query: 199 --------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
                   K+F+ M ERD V WN++I G+A  G+  EAL +F  M  EGV+ +  +MV +
Sbjct: 191 CGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLV 250

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SAC  L  L  GR  H YV +  +   V +  AL+D Y+KCG +  A +VF  M++RN 
Sbjct: 251 LSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNV 310

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
            +WS+ + GLA+NGFG+E+L+LF +M+  G  P  +TF+ VL  CS  G+V+EG  +F  
Sbjct: 311 YTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDS 370

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M++ YGI P++EH+G MVD+ GRAG +K+A  +I +M M P+   W  LL AC ++ +  
Sbjct: 371 MRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKE 430

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           + EIA+  +++LE K+ G YVLLSN+YA  + W +V  +R+TM  + VKK PG S++E+ 
Sbjct: 431 LGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVD 490

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
             V EF +GD+SHP+ +EI   L EI+K L+L GYV  T  V  DIEEEEKEDALS HSE
Sbjct: 491 GEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSE 550

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L++     P+RVV NLR+C DCH   K+ISK+++REI+VRDR+RFHHFKDG C
Sbjct: 551 KVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGEC 610

Query: 611 SCRDYW 616
           SC+DYW
Sbjct: 611 SCKDYW 616


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/526 (45%), Positives = 346/526 (65%), Gaps = 11/526 (2%)

Query: 102 HVQDPNI--FTWNTMIRGYAES-ANPL----LAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           H   P +  F WNT+IR + ++ A P       + ++ +M   G++PD HT+PFLL++ +
Sbjct: 16  HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA 75

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
             + + +G   H+  +R G     FVQ SL+ MY++ G V  A  +F +M ER++++W+ 
Sbjct: 76  SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSC 135

Query: 215 VINGFASNGKPNEALTLFREMASEGV---EPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           +ING+   G+  EAL LFREM   GV    P+ +TM  + +AC  LGAL  G+ AH Y+ 
Sbjct: 136 MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID 195

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEAL 330
           K G+  +V +  AL+D Y+KCG +  A  VF  +   ++ ++WS ++ GLA++G  +E +
Sbjct: 196 KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECV 255

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            LF +M   G  P  VTF+ V  AC H G+V EG  Y +RM ++Y I+P I+H+GCMVDL
Sbjct: 256 GLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDL 315

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
            GRAG +K+A+  +++M M P+ ++W  LL    +HG     E+A   L++LEP +SG Y
Sbjct: 316 YGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAY 375

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   RW +V+ VR  M    +KK PG SL+E+G  + EFF+GD SHP+T +IH
Sbjct: 376 VLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIH 435

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML EI ++LK+EGYV  T+ V  D++EE KE ALS HSEK+A+A+  + T+PGTP+R+V
Sbjct: 436 MMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIV 495

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR+C DCH+AIK+ISKV+ REI+VRD +RFHHF  G CSCRDYW
Sbjct: 496 KNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 14/287 (4%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LLQ  AS    H  + VHA  +R G+ ++ P +   LI ++ S S  +  A N+F+ + +
Sbjct: 70  LLQSFASPSLLHLGRSVHAQILRFGLAID-PFVQTSLI-SMYSSSGLVDMARNLFAVMPE 127

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSG---IKPDTHTYPFLLKAISKLADVRMG 162
            N+ +W+ MI GY        A+ L+ +M + G   ++P+  T   +L A  +L  +  G
Sbjct: 128 RNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG 187

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERDLVAWNSVINGFAS 221
           +  H+   + G    V +  +L+ MYA  G V+ A  VF  L   +D++AW+++I+G A 
Sbjct: 188 KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAM 247

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR---RAHTYVWKVGLSDN 278
           +G   E + LF +M ++GV P+  T +++F AC   G ++ G+   R  T  + +     
Sbjct: 248 HGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSI--IPT 305

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           +     ++D Y + G I  A  V + M  + + + W  L+ G  ++G
Sbjct: 306 IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/572 (42%), Positives = 365/572 (63%), Gaps = 5/572 (0%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +LLQ C   K     KQ+HA   + G+  N P L   L+  +  +   ++ AH +F  + 
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFN-PLLATKLV-NLYCICNSLTNAHLLFDRIS 63

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+F WN MIRGYA +    LA+ LY +M   G+ PD  T+PF+LKA S L+ +  G++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   IR+G ES VFV  +L+ MYA  G V+ A +VF+ + ERD+V WNS++  ++ NG+
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           P+E+L L R MA  G++P   T V   +A A+ G L  G+  H Y W+ G   N  V  A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+K G +  A+ +F  + ++  VSW+ ++ G A++G   EAL+LFKEM+ G  +P 
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPD 302

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            +TFVGVL ACSH G+++EG  +F+ M  ++ I P ++H+ CM+DLLG  G +++AY+ I
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M + P+A +W  LL +C IHG+  + E+A   L++LEP   G+YV+LSN+YA   +W 
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V  +R  M+ + +KK+   S +E+GN+V  F   D SHP++E I+A L    K +K  G
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y P+  +VF D+E++EK D +S HSE++AIAF L++T+ GT + ++KNLR+C DCH+AIK
Sbjct: 483 YAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIK 542

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISK+  REI +RD +R+HHFKDG CSC D+W
Sbjct: 543 FISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  LL++      +  G+Q H+   + G      +   LV++Y     + +A  +F+ +S
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           +R+L  WN +I G+A NG    A++L+ +M   G+ PD +T   +  AC+ L A+  G++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  V + GL  +V V  AL+D Y+KCG + +A++VF ++ +R+ V W++++   + NG 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
             E+L L + M   G  P E TFV  + A +  G++ +G     Y  R    +G     +
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWR----HGFESNDK 239

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               ++D+  ++G V  A    + +L     V W  ++    +HGH+
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFE-LLEEKRVVSWNAMITGYAMHGHA 285


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/572 (43%), Positives = 358/572 (62%), Gaps = 2/572 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++LL+ C S + + K+VHA  ++ G+  ++      +    +S    M YA +IF  +++
Sbjct: 35  LSLLKRCKSME-EFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEE 93

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P  F +NTMIRG   S +   A+ LY +M   GI+PD  TYPF+LKA S L  ++ G Q 
Sbjct: 94  PGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQI 153

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+     G E  VFVQN L+ MY   G ++ A  VFE M E+ + +W+S+I   AS    
Sbjct: 154 HAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMW 213

Query: 226 NEALTLFREMASEGV-EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           +E L L  +M+ EG    +   +VS  SAC  LG+  LGR  H  + +     NV V  +
Sbjct: 214 HECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTS 273

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y KCG +     VF+ M  +N  S++ ++ GLA++G G+EAL +F +M   G  P 
Sbjct: 274 LIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPD 333

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           +V +VGVL ACSH G+V EGF  F RM+ E+ I P I+H+GCMVDL+GRAG++K+AY+ I
Sbjct: 334 DVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLI 393

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           ++M + PN V+WR+LL AC +H +  I EIA   + +L   + GDY++L+N+YA  Q+W 
Sbjct: 394 KSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWA 453

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           NV  +R  MV++ + +TPG SLVE    V++F   D+S PQ E I+ M+ ++  +LK EG
Sbjct: 454 NVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEG 513

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y P    V  D++E+EK   L +HS+K+AIAF L+ T+ G+PVR+ +NLR+C DCH   K
Sbjct: 514 YTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTK 573

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            IS +Y REI VRD +RFHHFKDG CSC+DYW
Sbjct: 574 FISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/594 (42%), Positives = 363/594 (61%), Gaps = 7/594 (1%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           V+ L  +  +  ++ + + V+ C  +  +        + V A++ + G  ++   L   L
Sbjct: 159 VEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG-----RGVQAYAFKRGFMVDQFVLNS-L 212

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           I+   S    ++ AH +F  VQ   +  WN MI GY ++ +    VE++  M       D
Sbjct: 213 IHMYASCGDVVA-AHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFD 271

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   +  A  +L D  +G+     A   G      +  +LV MYA  G +  A ++F+
Sbjct: 272 EVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFD 331

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M  RD+VAW+++I+G+  + +  EAL +F EM    V P+  TMVS+ SACA LGAL  
Sbjct: 332 RMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALET 391

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+  H+Y+ +  L   V +  AL+DFY+KCG I  A + F  M  RN  +W+ L+ G+A 
Sbjct: 392 GKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMAS 451

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NG  +EALELF  M      P +VTF+GVL ACSH  +V+EG  +F  M  +YGI P+IE
Sbjct: 452 NGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIE 511

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+GCMVDLLGRAGL+ +AY++I+NM + PNAV+WR LL ACT+H +  I E A   ++ L
Sbjct: 512 HYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPL 571

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +P HSG+Y+LLSN YA   +W N   VR+ M ++ V+K PG SL+EL   +FEFF  D  
Sbjct: 572 DPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSE 631

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HPQ  EI+  + E+ + +K+ GY+P T +   D++E EK+ ++S+HSEK+AIAF L+ + 
Sbjct: 632 HPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSR 691

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           PG  +R+ KNLRVC DCH A KLISKVY+REI+VRDR+RFHHFKDG CSC DYW
Sbjct: 692 PGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/557 (45%), Positives = 358/557 (64%), Gaps = 5/557 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++HA  ++ G   +   L + L+    S    +SYA +IF  +  P+ F +NT+IR +A+
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S+    ++ L+SKM ++G+ PD  T+PF+LKA ++L   + G   HS+  + GF+S V+V
Sbjct: 66  SSP-SFSLSLFSKMAMAGVSPDHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYV 121

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG- 239
           QN L+H Y   G +  A KVFE M ERDLV+W+S+I  FA NG   EAL LF+ M   G 
Sbjct: 122 QNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V+PD   ++S+ SA + LG L LG+    ++ + GL   V++  AL+D +S+CG I  + 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RVF EM +RN ++W+ L+ GLAV+G   EAL +F EM   GF P  VTF GVL ACSH G
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGG 301

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG+  F+ +++EYG+ P  EH+GCMVDLLGRAGL+ +A +++  M + PN++IWRTL
Sbjct: 302 LVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTL 361

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE  +  + +L+  H GDYVLLSN+Y    RW     VR +M ++R+ 
Sbjct: 362 LGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRIS 421

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG SL+ + + + EF  GD +HPQ E I   L  +   LK+ GY P   NV  DIEEE
Sbjct: 422 KKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEE 481

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE  L YHSEK+A+AF L+       +RV+KNLR+C DCH  +K  S V+ REI++RDR
Sbjct: 482 EKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDR 541

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF  G CSCRDYW
Sbjct: 542 NRFHHFSKGSCSCRDYW 558


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/593 (42%), Positives = 367/593 (61%), Gaps = 2/593 (0%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           SL +S P S E       +  ++LL+ C S + + KQVHA  ++ G+  ++      +  
Sbjct: 14  SLPNSPPQSSELNAKFNEQGWLSLLKRCKSME-EFKQVHAHILKLGLFYDSFCGSNLVAS 72

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
             +S    M YA +IFS +++P  F +NTMIRG   S +   A+ LY +M   GI+PD  
Sbjct: 73  CALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNF 132

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYPF+LKA S L  ++ G Q H+   + G E  VFVQN L+ MY   G ++ A  VFE M
Sbjct: 133 TYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM 192

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGALALG 263
            E+ + +W+S+I   AS    +E L L  +M+ EG    +   +VS  SAC  LG+  LG
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLG 252

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R  H  + +     NV V  +L+D Y KCG +     VF+ M  +N  S++ ++ GLA++
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G G+EA+ +F +M   G  P +V +VGVL ACSH G+V+EG   F RM+ E+ I P I+H
Sbjct: 313 GRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQH 372

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GCMVDL+GRAG++K+AY+ I++M + PN V+WR+LL AC +H +  I EIA   + +L 
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLN 432

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
             + GDY++L+N+YA  ++W NV  +R  M ++ + +TPG SLVE    V++F   D+S 
Sbjct: 433 KHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 492

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P  E I+ M+ ++  +LK EGY P    V  D++E+EK   L +HS+K+AIAF L+ T+ 
Sbjct: 493 PICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSE 552

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           G+P+R+ +NLR+C DCH   K IS +Y REI VRDR+RFHHFKDG CSC+DYW
Sbjct: 553 GSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/560 (42%), Positives = 356/560 (63%), Gaps = 1/560 (0%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           + KQVHA  ++ G+  +   +   +    ++    M YA +IF+ + +P+ F +NTMIRG
Sbjct: 13  EFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRG 72

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
                    A+ LY  M   G++PD  TYPF+LKA S L  V  G Q H    + G E  
Sbjct: 73  NVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGD 132

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V VQNSL++MY   G +K+AC VF  M E+ + +W+++I   A     NE L L  +M+S
Sbjct: 133 VIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSS 192

Query: 238 EG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           EG    +  T+V++ SAC  LG+  LG+  H  + +     NV V  +L+D Y K G + 
Sbjct: 193 EGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLE 252

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              RVF+ M ++N  S++ ++ GLA++G GKEAL++F EM   G  P +V +VGV  ACS
Sbjct: 253 KGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACS 312

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V+EG   FK M+ E+ I P ++H+GCMVDLLGR G++K+AYE I++M + PN VIW
Sbjct: 313 HAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIW 372

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           R+LL AC +H +  I +IA   L  L   +SGDY++L+N+YA  Q+W +V ++R  + + 
Sbjct: 373 RSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAER 432

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + +TPG SL+E   +V++F   D+S PQ   I+ M+ ++  +LK EGY+P T  V  D+
Sbjct: 433 NLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDV 492

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           ++EEK++ L +HS+K+AIAF L++T+ G+P+R+ +NLR+C+DCH   K IS +Y REI V
Sbjct: 493 DDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITV 552

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR RFHHFK+G CSC+DYW
Sbjct: 553 RDRLRFHHFKNGSCSCKDYW 572


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/602 (42%), Positives = 377/602 (62%), Gaps = 24/602 (3%)

Query: 20  PCRVK-SLYHSTPASQENPITS------VVRKCITLLQVCASSKHKLKQVHAFSIRHGVP 72
           PC V     HS P    N IT            ++L+  C+ +K +LKQ+HA  +R G+ 
Sbjct: 6   PCLVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETK-QLKQIHAQMLRTGL- 63

Query: 73  LNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +P     LI A     FP + YA  +F  +  PN++TWNT+IR YA S+NP  ++ ++
Sbjct: 64  FFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIF 123

Query: 132 SKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
            +M H S   PD  T+PFL+KA S+L ++  G+  H + I+    S VF+ NSL+H YA 
Sbjct: 124 LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAK 183

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G +    +VF     RD+V+WNS+I  F   G P EAL LF+EM ++ V+P+G TMV +
Sbjct: 184 CGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGV 243

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SACA+      GR  H+Y+ +  + +++ ++NA+LD Y+KCG +  A+R+F +M +++ 
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303

Query: 311 VSWSTLVVG------------LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           VSW+T++VG            LA++G GK+A+ LF +M+     P  VTF  +L ACSH 
Sbjct: 304 VSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHV 363

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V+EG ++F +M+  YG++P ++H+ CMVD+LGRAGL+++A E I+ M M P A +W  
Sbjct: 364 GLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGA 423

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGACTIH +  +AE A S L++LEP + G YVLLSN+YA   +W  V  +R+ M    +
Sbjct: 424 LLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGL 483

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KK PG S +E+   V EF +GD SHP  ++I+A L EI  +L+  GYVP   ++   +EE
Sbjct: 484 KKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEE 543

Query: 539 EE-KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           E+ KE AL  HSEK+AIAF L++T    P+R+VKNLRVC DCH   KL+SK+Y REI++R
Sbjct: 544 EDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLR 603

Query: 598 DR 599
           DR
Sbjct: 604 DR 605


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/557 (45%), Positives = 357/557 (64%), Gaps = 5/557 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++HA  ++ G   +   L + L+    S    +SYA +IF  +  P+ F +NT+IR +A+
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S+    ++ L+SKM ++G+ PD  T+PF+LKA ++L   + G   HS+  + GF+S V+V
Sbjct: 66  SSP-SFSLSLFSKMTMAGVSPDHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYV 121

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG- 239
           QN L+H Y   G +  A K FE M ERDLV+W+S+I  FA NG   EAL LF+ M   G 
Sbjct: 122 QNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V+PD   ++S+ SA + LG L LG+    ++ + GL   V++  AL+D +S+CG I  + 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RVF EM +RN ++W+ L+ GLAV+G   EAL +F EM   GF P  VTF GVL ACSH G
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGG 301

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG+  F+ +++EYG+ P  EH+GCMVDLLGRAGL+ +A +++  M + PN++IWRTL
Sbjct: 302 LVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTL 361

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE  +  + +L+  H GDYVLLSN+Y    RW     VR +M ++R+ 
Sbjct: 362 LGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRIS 421

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG SL+ + + + EF  GD +HPQ E I   L  +   LK+ GY P   NV  DIEEE
Sbjct: 422 KKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEE 481

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE  L YHSEK+A+AF L+       +RV+KNLR+C DCH  +K  S V+ REI++RDR
Sbjct: 482 EKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDR 541

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF  G CSCRDYW
Sbjct: 542 NRFHHFSKGSCSCRDYW 558


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/574 (43%), Positives = 360/574 (62%), Gaps = 12/574 (2%)

Query: 54  SSKHKLKQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFP----MSYAHNIFSHVQDPNI 108
           +S   L Q+HA +++ G  L  +P     L+             ++YA  +F  +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 109 FTW-NTMIRGYAESANPLLAVE----LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
             W NT++RGYA         E    ++ +M   G+ PDT+T+  LLKA +       G 
Sbjct: 99  VVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGR 158

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H VA++ G     +V  +L++MYA  G V+ A  +F+ M    +V++N++I     + 
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P EAL LFREM ++G++P   T++S+ SACA LGAL LGR  H Y+ K+ L   V VN 
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNT 278

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+KCG +  A  VF++M  R+  +WS ++V  A +G+G+EA+ +F+EM+  G  P
Sbjct: 279 ALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKP 338

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            +VTF+GVLYACSH GMV EG  YF  M+ EYGI+  I+H+GC+ DLL R+G +++AY++
Sbjct: 339 DDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKF 397

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I  + + P A++WRTLL AC  HG   + +     +L+L+  H GDYV+ SNL A   RW
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRW 457

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             +  VR+ M ++ V K PG S +E+ N V EFF GD SHP ++E   M+ E+ ++LKL 
Sbjct: 458 EEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLV 517

Query: 524 GYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           GYVP T +VF  ++ EEEK  +L YHSEK+AI+F L+NTAPGT +R+VKNLRVC DCH  
Sbjct: 518 GYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSM 577

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KL+S V++R I++RD +RFHHF+DG CSC DYW
Sbjct: 578 AKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/586 (42%), Positives = 359/586 (61%), Gaps = 6/586 (1%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           +++ P+T  +     LL+  +S   +LK++HA  +R G    N  L + L   +V     
Sbjct: 3   AKQTPLTKQMLS--ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGD-- 58

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M YA  +F  +  P IF WNT+ +GY  +  P  ++ LY KM   G++PD  TYPF++KA
Sbjct: 59  MCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKA 118

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           IS+L D   G   H+  ++ GF  L  V   LV MY  FG +  A  +FE M  +DLVAW
Sbjct: 119 ISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ +      G    AL  F +M ++ V+ D +T+VS+ SAC +LG+L +G   +    K
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARK 238

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             +  N+ V NA LD + KCG   AA+ +F EM++RN VSWST++VG A+NG  +EAL L
Sbjct: 239 EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTL 298

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDEYGIMPKIEHFGCMVDL 390
           F  M+  G  P  VTF+GVL ACSH G+V+EG  YF  M   ++  + P+ EH+ CMVDL
Sbjct: 299 FTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDL 358

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGR+GL+++AYE+I+ M + P+  IW  LLGAC +H    + +     L++  P     +
Sbjct: 359 LGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYH 418

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   +W  V +VR  M K   KK   +S VE   ++  F  GD+SHPQ++ I+
Sbjct: 419 VLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIY 478

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             L EI KK++  GYVP T +VF D+E EEKE +LS+HSEK+AIAF L+   PG P+RV+
Sbjct: 479 EKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVM 538

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR C DCH   K +S + S EI++RD++RFHHF++G CSC+++W
Sbjct: 539 KNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/524 (44%), Positives = 347/524 (66%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YAH IFS    PN+F WNT+IRGY+ S +P+ A+ LY  M + GI P+++T+ F+L A
Sbjct: 17  VAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNA 76

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
             KL  +  G++ HS  ++ G +    + N L+ +YAA G +  AC +F+ M E D  +W
Sbjct: 77  CCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASW 136

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++++G++ NG+  E L L REM +E V  D +T+ S+   C +LG L LG+  H+Y+ K
Sbjct: 137 STMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDK 196

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+  +V +  AL+  YSKCG +  A +VF+ M +R+  +WS ++ G A++G  ++AL+L
Sbjct: 197 EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQL 256

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F  M+    +P  VTF  VL A SH G+V++G   F+ M  EY I P+I+H+GCMVDL  
Sbjct: 257 FDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFC 316

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG+V  A+++IQ M + PN V+WRTLLGAC  HG+  + E     +L+L+P    +YV 
Sbjct: 317 RAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVF 376

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SN+YA   RW +V +VR  M ++  KK  G S +E+   V +F MG+ SHP+ E+I+ M
Sbjct: 377 VSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGM 436

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++ +KLK  G+V  T +V  DI+EEEKE AL  HSE++AIA+ L++T  G+P+R+VKN
Sbjct: 437 LHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKN 496

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR C DCH  IKLIS+VY+REI++RDR  FHHF++  CSC DYW
Sbjct: 497 LRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 2/241 (0%)

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           GHV  A  +F      +L  WN++I G++ +  P  A+ L+++M   G+ P+ YT   + 
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +AC +L  L  G+  H+ + K GL     + N L+  Y+ CG +  A  +F EM + ++ 
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SWST+V G + NG   E L+L +EM+         T   V+  C   G++D G  +    
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSY 193

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
            D+ G+   +     +V +  + G +  A +  Q M    +   W  ++    IHGH   
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM-AERDVTTWSIMIAGYAIHGHDEK 252

Query: 432 A 432
           A
Sbjct: 253 A 253


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/601 (40%), Positives = 370/601 (61%), Gaps = 11/601 (1%)

Query: 24  KSLYHSTPASQENPITSVVRKCIT------LLQVCASSK--HKLKQVHAFSIRHGVPLNN 75
           +S YHS    Q   + S   +  T      LLQ C  SK  +  KQ+HA     G+  N 
Sbjct: 23  QSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQ 82

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135
            DL   L++ + ++S  +  A N+F  +   N+F WN +IRGYA +     A+ LY KM 
Sbjct: 83  -DLATKLVH-LYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKML 140

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
             G++PD  T PF+LKA S L+ +  G   H   I++G+E  +FV  +L+ MYA  G V 
Sbjct: 141 DYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVM 200

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           DA +VF+ +  RD V WNS++  +A NG P+E+++L REMA+ GV P   T+V++ S+ A
Sbjct: 201 DAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSA 260

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           ++  L  GR  H + W+ G   N  V  AL+D Y+KCG +  A  +F  +R++  VSW+ 
Sbjct: 261 DVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNA 320

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ G A++G    AL+LF +M      P  +TFVGVL ACS   ++DEG + +  M  +Y
Sbjct: 321 IITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDY 379

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           GI P ++H+ CM+DLLG  G + +AY+ I+NM + P++ +W  LL +C IHG+  +AE+A
Sbjct: 380 GITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELA 439

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
              L++LEP  SG+YV+L+N+YA   +W  V+++R+ M+ +R+KK    S +E+ N+V+ 
Sbjct: 440 LEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYA 499

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIA 555
           F  GD SH  ++ I+A L  +   +   GY P T +VF D+EE+EK   +  HSE++AIA
Sbjct: 500 FLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIA 559

Query: 556 FMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           F L++T+PGT + + KNLR+C DCH+AIK ISK+  REI VRD +R+H FK G CSC D+
Sbjct: 560 FGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDH 619

Query: 616 W 616
           W
Sbjct: 620 W 620


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/521 (45%), Positives = 334/521 (64%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N  +W   I GY        A++++ ++   G++PD+ +   +L A  +
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+R GE        NG    VFV  +LV  Y   G+++ A  VF+ M E+++V+W+S+
Sbjct: 222 TGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSM 281

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+ASNG P EAL LF +M +EG++PD Y MV +  +CA LGAL LG  A   +     
Sbjct: 282 IQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEF 341

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            DN  +  AL+D Y+KCG +  A  VFR MRK++ V W+  + GLA++G  K+AL LF +
Sbjct: 342 LDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQ 401

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME  G  P   TFVG+L AC+H G+V+EG  YF  M+  + + P+IEH+GCMVDLLGRAG
Sbjct: 402 MEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAG 461

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A++ I++M M  NA++W  LLG C +H  + + E+    L+ LEP HSG+YVLLSN
Sbjct: 462 CLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSN 521

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W    ++R  M +  VKK PG+S +E+   V +F +GD SHP +E+I+A L E
Sbjct: 522 IYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGE 581

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + K LK  GYVP T++V  DIEEEEKE  +  HSEK+A+AF L++TAP   + VVKNLRV
Sbjct: 582 LAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRV 641

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK IS++  REI+VRD +RFH F DG CSC+DYW
Sbjct: 642 CGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 211/384 (54%), Gaps = 11/384 (2%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSHVQ 104
           L+Q  +  KH LK +HA  +R G+     D   YL+  ++  SF     +Y+  I    +
Sbjct: 16  LIQGFSCLKH-LKHIHAALLRLGL-----DEDTYLLNKVLRFSFNFGNTNYSFRILDQTK 69

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +PNIF +NTMIRG   +     ++E+Y  M   G+ PD+ T+PF+LKA +++ D  +G +
Sbjct: 70  EPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS+ ++ G E+  FV+ SL+++Y   G + +A KVF+ + +++  +W + I+G+   GK
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EA+ +FR +   G+ PD +++V + SAC   G L  G     Y+ + G+  NV V  A
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+DFY KCG +  A+ VF  M ++N VSWS+++ G A NG  KEAL+LF +M   G  P 
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPD 309

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
               VGVL +C+  G ++ G  +   + +    +        ++D+  + G + +A+E  
Sbjct: 310 CYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVF 368

Query: 405 QNMLMPPNAVIWRTLLGACTIHGH 428
           + M    + V+W   +    + GH
Sbjct: 369 RGM-RKKDRVVWNAAISGLAMSGH 391



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 2/229 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A ++F  + + NI +W++MI+GYA +  P  A++L+ KM   G+KPD +    +L +
Sbjct: 260 MERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L  + +G+   ++   N F     +  +L+ MYA  G +  A +VF  M ++D V W
Sbjct: 320 CARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVW 379

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ I+G A +G   +AL LF +M   G++PD  T V L  AC   G +  GRR    +  
Sbjct: 380 NAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMEC 439

Query: 273 V-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVG 319
           V  L+  +     ++D   + G +  A ++ + M  + NA+ W  L+ G
Sbjct: 440 VFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/582 (41%), Positives = 364/582 (62%), Gaps = 33/582 (5%)

Query: 66  SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPL 125
           +++HG   +N  + K  I+ + SL   +  A  +F       + TWN M+ GY       
Sbjct: 133 AVKHGFD-SNLFVQKAFIH-MFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
            +  L+ +M   G+ P++ T   +L A SKL D+  G+  +        E  + ++N L+
Sbjct: 191 KSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLI 250

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN------------------- 226
            M+AA G + +A  VF+ M  RD+++W S++ GFA+ G+ +                   
Sbjct: 251 DMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTA 310

Query: 227 ------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
                       EAL LFREM    V+PD +TMVS+ +ACA LGAL LG    TY+ K  
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS 370

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           + ++  V NAL+D Y KCG +  A++VF+EM  ++  +W+ ++VGLA+NG G+EAL +F 
Sbjct: 371 IKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFS 430

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M      P E+T++GVL AC+H GMV++G S+F  M  ++GI P + H+GCMVDLLGRA
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRA 490

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G +++A+E I NM + PN+++W +LLGAC +H +  +AE+A   +L+LEP++   YVLL 
Sbjct: 491 GRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  +RW N+++VR+ M++  +KKTPG SL+EL   V+EF  GD+SHPQ++EI+A L 
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            + + L   GY P T  VF D+ EE+KE AL  HSEK+AIA+ L+++ PG  +R+VKNLR
Sbjct: 611 NMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLR 670

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +C DCH   KL+S+ Y+RE++VRD++RFHHF+ G CSC ++W
Sbjct: 671 MCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 222/428 (51%), Gaps = 36/428 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAHNIFSHVQ 104
           I+LL+ C  S ++LKQ+H+ +I+ G+  ++P   K +I +     S  M YA  +F  + 
Sbjct: 11  ISLLEKC-KSMYQLKQIHSHTIKMGLS-SDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            P +F WNTMI+GY+   +P   V +Y  M  S IKPD  T+PFLLK  ++   ++ G+ 
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
             + A+++GF+S +FVQ + +HM++    V  A KVF++    ++V WN +++G+    +
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             ++  LF EM   GV P+  T+V + SAC++L  L  G+  + Y+    +  N+ + N 
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA----------------------- 321
           L+D ++ CG +  AQ VF  M+ R+ +SW+++V G A                       
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW 308

Query: 322 ---VNGFGK-----EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
              ++G+ +     EAL LF+EM++    P E T V +L AC+H G ++ G  + K   D
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYID 367

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +  I         ++D+  + G V +A +  + M    +   W  ++    I+GH   A 
Sbjct: 368 KNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM-HHKDKFTWTAMIVGLAINGHGEEAL 426

Query: 434 IARSTLLQ 441
              S +++
Sbjct: 427 AMFSNMIE 434


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 369/590 (62%), Gaps = 35/590 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++H F ++ G+   +  +G  L+      +  + YA  +F  + + ++ +W+TMIR  +
Sbjct: 144 KEIHGFVLKKGLD-RDVFVGNALMLMYGECAC-VEYARLVFDKMMERDVVSWSTMIRSLS 201

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +    +A+EL  +M+   ++P       ++   +  A++RMG+  H+  IRN     + 
Sbjct: 202 RNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 261

Query: 180 V--QNSLVHMYAAFGHV-------------------------------KDACKVFELMSE 206
           V    +L+ MYA  GH+                               ++A  +F+    
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD++ W ++++ +A     ++A  LF +M + GV P   T+VSL S CA  GAL LG+  
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H+Y+ K  +  +  +N AL+D Y+KCG I AA R+F E   R+   W+ ++ G A++G+G
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EAL++F EME  G  P ++TF+G+L+ACSH G+V EG   F++M   +G++P+IEH+GC
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           MVDLLGRAGL+ +A+E I++M + PN ++W  L+ AC +H +  + E+A + LL++EP++
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 561

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            G  VL+SN+YA   RW +   VR+TM    +KK PGHS++E+   V EF MGD+SHPQ 
Sbjct: 562 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQI 621

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
             I+ MLAE+ +KL   GYVP T  V  +I+EEEKE AL+YHSEK+A+AF L++TAP TP
Sbjct: 622 RRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTP 681

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+VKNLRVC DCH A KL+SK+Y R I+VRDR+RFHHF++G+CSC DYW
Sbjct: 682 IRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 193/418 (46%), Gaps = 56/418 (13%)

Query: 5   LMHSKQPSYEEISDLPCRVKSLYHS-------TPASQENPITSVVRKCITLLQVCASSKH 57
           +M S +P     S LP  ++ L H         P   + P TS  +  ++ L+       
Sbjct: 6   MMVSTKPQLTP-SLLPLTIQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLE------- 57

Query: 58  KLKQVHAFSIR----HG--VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW 111
           + KQ+HA  I+    H   +PLN+               FP   + +            W
Sbjct: 58  QTKQIHAHIIKTHFHHALQIPLND---------------FPSGLSPSA----------QW 92

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I  Y +   P  A+ +Y+++     + D    P +LKA  +++  ++G++ H   ++
Sbjct: 93  NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            G +  VFV N+L+ MY     V+ A  VF+ M ERD+V+W+++I   + N + + AL L
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALEL 212

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV--NNALLDFY 289
            REM    V P    MVS+ +  A+   + +G+  H YV +   ++++ V    ALLD Y
Sbjct: 213 IREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMY 272

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG +  A+++F  + ++  VSW+ ++ G   +   +EA  LF   +        + + 
Sbjct: 273 AKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDV----MIWT 328

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG---LVKQAYEYI 404
            +L A +    +D+ F+ F +M+   G+ P       ++ L   AG   L K  + YI
Sbjct: 329 AMLSAYAQANCIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI 385


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/615 (40%), Positives = 367/615 (59%), Gaps = 42/615 (6%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           ++P  +++   ITL         +LKQ+H   + +G+  N   LG+++    V     + 
Sbjct: 9   KHPTIALIDSFITL--------KELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLL 60

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKA 152
           Y++ I      P +F  N+MIR Y++S  P  + + Y+K+  S   + PD +T+ FL++ 
Sbjct: 61  YSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRT 120

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF--------------------- 191
            ++ A    G   H   I++GFE    V++ L+ MYA                       
Sbjct: 121 CAQSA-CEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQ 179

Query: 192 ----------GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
                     G +  A  +F+ M +RD V+WN++I G+A  G+  EAL LF+ M  +GV+
Sbjct: 180 TTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVK 239

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            +  +M+S+ +AC  LGAL  G+ AH Y+ K  +   VN+  AL+D Y KCG +  A +V
Sbjct: 240 VNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKV 299

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F EM ++N  +WST + GLA+NG+G++ LELF  M+  G  P E+TF+ VL  CS  G V
Sbjct: 300 FWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFV 359

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           DEG S+F  MK ++GI P++EH+GCMVDL GRAG +++A  +I  M + P+A  W  LL 
Sbjct: 360 DEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLN 419

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC ++ +  + E A   L+++E K+ G YV LSN+YA    W  V  VR++M  E + K 
Sbjct: 420 ACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKL 479

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
           PG S++E+   V EFF GD+SHP  + I  M  EI+K+LKL GYV  T +V  DIEEEEK
Sbjct: 480 PGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEK 539

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           EDAL  HSEK+AIAF L +   G P+R+VKNLR+C DCH   K+ISK++ REI+VRDR+R
Sbjct: 540 EDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNR 599

Query: 602 FHHFKDGHCSCRDYW 616
           FHHFKDG CSC+D+W
Sbjct: 600 FHHFKDGECSCKDFW 614


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/543 (45%), Positives = 350/543 (64%), Gaps = 21/543 (3%)

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135
           PD  +Y   A V L FP+           DP  F +N +IR  A  A P LA+ L+S MH
Sbjct: 45  PDTARYA--AAVLLRFPIP---------GDP--FPYNAVIRHVALHA-PSLALALFSHMH 90

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
            + +  D  T+P +LK+ SKL         H++ ++ GF S ++VQN+L++ Y   G + 
Sbjct: 91  RTNVPFDHFTFPLILKS-SKLNP----HCIHTLVLKLGFHSNIYVQNALINSYGTSGSLH 145

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA--SEGVEPDGYTMVSLFSA 253
            + K+F+ M  RDL++W+S+I+ FA  G P+EALTLF++M      + PDG  M+S+ SA
Sbjct: 146 ASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISA 205

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
            + LGAL LG   H ++ ++G++  V++ +AL+D YS+CG I  + +VF EM  RN V+W
Sbjct: 206 VSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTW 265

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + L+ GLAV+G G+EALE F +M   G  P  + F+GVL ACSH G+V+EG   F  M  
Sbjct: 266 TALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWS 325

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           EYGI P +EH+GCMVDLLGRAG+V +A+++++ M + PN+VIWRTLLGAC  H    +AE
Sbjct: 326 EYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAE 385

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
            A+  + +L+P H GDYVLLSN Y     W+  + VR +M + ++ K PG SLV +    
Sbjct: 386 KAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVA 445

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
            EF  GD SHPQ EEI   L  +   +KL GY P T+NV  DI+EEEKE +L YHSEK+A
Sbjct: 446 HEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLA 505

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +AF+L+       +RV+KNLR+C DCH  +K +S  + R+IV+RDRSRFHHF+ G CSCR
Sbjct: 506 VAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCR 565

Query: 614 DYW 616
           D+W
Sbjct: 566 DFW 568


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/611 (41%), Positives = 371/611 (60%), Gaps = 37/611 (6%)

Query: 43  RKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           RK I LL  CA+  S  +L ++ A  I   +P  +P++       + S    + ++  IF
Sbjct: 22  RKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIF 81

Query: 101 SH-VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGIKPDTHTYPFLLKAISKLA 157
           +H +  PNIF +N +++ +++       +  ++   V  +   PD +T+  +LKA + LA
Sbjct: 82  NHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLA 141

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG------------------------- 192
            V  G++ H    + G ES +FV+NSLV +Y   G                         
Sbjct: 142 QVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLIS 201

Query: 193 ------HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGY 245
                  V  A  VF+ M E++LV+W+++I+G+A N K  +A+ LFR+M  EG + P+  
Sbjct: 202 GYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDV 261

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+VS+ SACA LGAL LG+  H ++ +  +   + + NAL D Y+KCG ++ A+ VF EM
Sbjct: 262 TLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEM 321

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            +R+ +SWS +++GLA+ G+  EA   F EM   G  P +++F+G+L AC+H G+VD+G 
Sbjct: 322 HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGL 381

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
            YF  M   YGI PKIEH+GC+VDLL RAG + QA   I +M M PN ++W  LLG C I
Sbjct: 382 EYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRI 441

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485
           +  +   E     +L+L+  HSG  V L+N+YA   R  +    R  M   +  KTPG S
Sbjct: 442 YKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCS 501

Query: 486 LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL 545
            +E+ N V+EFFMGD SHPQ+  I++M+ E+  K+K+ GY P+T+ V  +I+EEEKEDAL
Sbjct: 502 WIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDAL 561

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
           S HSEK+A+AF L+NT+ GT +R+VKNLRVC DCH AIK+ISK+  REIVVRDRSRFHHF
Sbjct: 562 STHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHF 621

Query: 606 KDGHCSCRDYW 616
           KDG CSC DYW
Sbjct: 622 KDGKCSCNDYW 632


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/594 (41%), Positives = 360/594 (60%), Gaps = 31/594 (5%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           S+  +LKQ H+  IR G+  +N  +G+ + +  +S S  ++YA  +F  +  P+ + +NT
Sbjct: 31  STMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNT 90

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           + RGY         + +YS+M    + P+  TYP L++A      +  G+Q H+  ++ G
Sbjct: 91  IFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG 150

Query: 174 FESLVFVQNSLVHMYAAF-------------------------------GHVKDACKVFE 202
           F +  F  N+L+HMY  F                               G V  A +VFE
Sbjct: 151 FGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFE 210

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
           LM ER+ V+WN++I  +  + + +EA  LF  M  E V  D +   S+ SAC  LGAL  
Sbjct: 211 LMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 270

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+  H Y+ K G+  +  +   ++D Y KCG +  A  VF E+ ++   SW+ ++ GLA+
Sbjct: 271 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 330

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G G+ A+ELFKEME     P  +TFV VL AC+H G+V+EG  YF+ M +  G+ P +E
Sbjct: 331 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 390

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           HFGCMVDLLGRAGL+++A + I  M + P+A +   L+GAC IHG++ + E     +++L
Sbjct: 391 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 450

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           EP +SG YVLL+NLYA   RW +V +VR+ M    VKK PG S++E  + V EF  G R+
Sbjct: 451 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 510

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HPQ +EI+A L EI + ++  GYVP T+ V  DI+EEEKE+ L YHSEK+AIAF L+ T 
Sbjct: 511 HPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTK 570

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           PG  +R+ KNLR+C DCH A KLISKVY REI++RDR+RFHHF+ G CSC+DYW
Sbjct: 571 PGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/552 (43%), Positives = 345/552 (62%), Gaps = 31/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ + + ++ +W+ +I GY ++     A+ ++ +M+ +G++ D      +L A + 
Sbjct: 257 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 316

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK---------------- 199
           L+ V+ G+  H + IR G ES V +QN+L+HMY+  G + DA K                
Sbjct: 317 LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSM 376

Query: 200 ---------------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                          +F++M E+D+V+W++VI+G+A +   +E L LF EM    + PD 
Sbjct: 377 ISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDE 436

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +VS+ SAC  L AL  G+  H Y+ K GL  NV +   LLD Y KCG +  A  VF  
Sbjct: 437 TILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNG 496

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M ++   SW+ L++GLAVNG  + +L++F EM+  G +P E+TF+GVL AC H G+VDEG
Sbjct: 497 MEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEG 556

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             +F  M +++GI P ++H+GCMVDLLGRAGL+ +A + I++M M P+   W  LLGAC 
Sbjct: 557 RCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACK 616

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            HG + + E     L++L+P H G +VLLSN++A +  W +V EVR  M ++ V KTPG 
Sbjct: 617 KHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGC 676

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           SL+E    V EF  GD++HP   ++  ML E+ K+LK+EGY P T  V  DI+EEEKE  
Sbjct: 677 SLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETT 736

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L  HSEK+AIAF L+  +P TP+R++KNLR+C DCH A KLISK Y+REIVVRDR RFH+
Sbjct: 737 LFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHY 796

Query: 605 FKDGHCSCRDYW 616
           FK+G CSC DYW
Sbjct: 797 FKEGACSCMDYW 808



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 170/357 (47%), Gaps = 57/357 (15%)

Query: 15  EISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAF---SIRHGV 71
           +++ L   +KS ++  P  +     S++    T L  C    H LKQ +      I  G 
Sbjct: 17  KLNQLSSALKSTFNHKPTFKPTITLSILE---THLHNC----HNLKQFNRILSQMILTGF 69

Query: 72  PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +     + L ++  S    + Y+  IF  +++ N F WNTM+R Y +S +   A+ LY
Sbjct: 70  ISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLY 129

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRM----GEQTHSVAIRNGFESLVFVQNSLVHM 187
             M  + + PD +TYP +++A +    VR+    G++ H   ++ GF+S V+VQN+L++M
Sbjct: 130 KLMVKNNVGPDNYTYPLVVQACA----VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINM 185

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           YA  G+++DA K+F+     D V+WNS++ G+   G   EA  +F +M            
Sbjct: 186 YAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQR--------- 236

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
                                         N+  +N+++    K G ++ A ++F EM +
Sbjct: 237 ------------------------------NIVASNSMIVLLGKMGQVMEAWKLFNEMDE 266

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           ++ VSWS L+ G   NG  +EAL +F EM   G    EV  V VL AC+H  +V  G
Sbjct: 267 KDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 167/358 (46%), Gaps = 49/358 (13%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D +++  NT+I  YA   N   A +L+ +  V     D+ ++  +L    K  DV   + 
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPV----LDSVSWNSILAGYVKKGDVEEAKL 228

Query: 165 T-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
               +  RN     +   NS++ +    G V +A K+F  M E+D+V+W+++I+G+  NG
Sbjct: 229 IFDQMPQRN-----IVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNG 283

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EAL +F EM + G+  D   +VS+ SACA L  +  G+  H  V ++G+   VN+ N
Sbjct: 284 MYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQN 343

Query: 284 ALLDFYS-------------------------------KCGIIIAAQRVFREMRKRNAVS 312
           AL+  YS                               KCG +  A+ +F  M +++ VS
Sbjct: 344 ALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVS 403

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
           WS ++ G A +    E L LF EM++G   P E   V V+ AC+H   +D+G    +Y +
Sbjct: 404 WSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIR 463

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +     G+   +     ++D+  + G V+ A E + N +       W  L+    ++G
Sbjct: 464 K----NGLKVNVILGTTLLDMYMKCGCVENALE-VFNGMEEKGVSSWNALIIGLAVNG 516


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/571 (43%), Positives = 354/571 (61%), Gaps = 4/571 (0%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           +L + C +S    KQ+H  S + G   +     +  +  + S    +  A  +F  ++D 
Sbjct: 93  SLFKSCRNSSEG-KQIHCHSTKLGFASDT--YAQNTLMNMYSNCGCLVSARKVFDKMEDK 149

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQT 165
            + +W TMI  +A+   P  AV L+ +M  S  +KP+  T   +L A ++  D+ M ++ 
Sbjct: 150 TVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRI 209

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H     +GF   V +   L+ +Y   G V+ A  +F+   E++L +WN +ING   +   
Sbjct: 210 HEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNY 269

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL LFREM ++G++ D  TM SL  AC  LGAL LG+  H Y+ K  +  +V +  AL
Sbjct: 270 EEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTAL 329

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D Y+KCG I  A +VF EM +++ ++W+ L++GLA+ G  + AL+ F EM I G  P  
Sbjct: 330 VDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDA 389

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           +TFVGVL ACSH G VDEG S+F  M D YGI P IEH+G +VD+LGRAG + +A E I+
Sbjct: 390 ITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIK 449

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           +M M P+  +   LLGAC IHG+   AE A   LL+++P HSG YVLLSN+Y   ++W  
Sbjct: 450 SMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEE 509

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
            +  R  M +  ++K PG S +E+   V EF  GD SH Q+ EI+ ML ++  KLK  GY
Sbjct: 510 AKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGY 569

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP    V  D+ EEEKE  LS HSEK+AIAF L++T+ GTP+RVVKNLR+C+DCH A KL
Sbjct: 570 VPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKL 629

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ISK+Y+REI+VRDR+RFHHFKDG CSCR +W
Sbjct: 630 ISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 205/377 (54%), Gaps = 14/377 (3%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +LKQ+HA  +R G+  +     K + +  +  S  + YA  +FS + +P  +T N++IRG
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
             +      A+  Y +M V G+ PD +T+P L K+    ++   G+Q H  + + GF S 
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASD 119

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF-REMA 236
            + QN+L++MY+  G +  A KVF+ M ++ +V+W ++I   A   +PNEA+ LF R M 
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           SE V+P+  T+V++ +ACA    LA+ +R H Y+ + G   +V +N  L+D Y KCG + 
Sbjct: 180 SENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ 239

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+ +F + +++N  SW+ ++ G   +   +EAL LF+EM+  G    +VT   +L AC+
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACT 299

Query: 357 HCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           H G ++ G    +Y K+ + +  +         +VD+  + G ++ A +      MP   
Sbjct: 300 HLGALELGKWLHAYIKKQRIDVDVALGT----ALVDMYAKCGSIETAIQVFHE--MPEKD 353

Query: 414 VI-WRTLLGACTIHGHS 429
           V+ W  L+    + G +
Sbjct: 354 VMTWTALILGLAMCGQA 370


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/618 (40%), Positives = 373/618 (60%), Gaps = 33/618 (5%)

Query: 30  TPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           TP SQ +  ++  +  + LLQ C S+  +L+Q+H   ++ G+ L+     K L +     
Sbjct: 7   TPTSQLSSESNAAQT-LHLLQRC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPN 64

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  ++YA  +F  +  PN F WNTMIRGY+ S  P  A+ LY  M    +  + +T+PFL
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFL 124

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA S ++ +   +Q H+  I+ GF S ++  NSL+++Y+  G +K A  +F+ + +RD 
Sbjct: 125 LKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184

Query: 210 VAWNSVINGFA-------------------------------SNGKPNEALTLFREMASE 238
           V+WNS+I+G+                                  GKP EAL LF  M + 
Sbjct: 185 VSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA 244

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++ D   +VS   ACA+LG L  G+  H Y+ K  +  +  +   L+D Y+KCG +  A
Sbjct: 245 GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 304

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VFR+M ++    W+ ++ G A++G G+EALE F +M+  G  P ++TF G+L ACSH 
Sbjct: 305 IEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 364

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V E    F+ M+  +G  P IEH+GCMVDLLGRAGL+K+A E I+NM + PNA IW  
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC IHG+  + +     L+Q++P H G Y+ L++++A    W     VRR M ++ V
Sbjct: 425 LLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            K PG S++ +     EF  GD SHPQ +EI  ML +I ++L+ EGY P+  ++  D+E+
Sbjct: 485 SKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLED 544

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           +EKE A+ +HSEK+A+ F L++T PG  +R+VKNLRVC DCH  IKLISKVY+REI++RD
Sbjct: 545 KEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRD 604

Query: 599 RSRFHHFKDGHCSCRDYW 616
           R+RFH FKDG+C+C DYW
Sbjct: 605 RTRFHLFKDGNCTCGDYW 622


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/610 (41%), Positives = 374/610 (61%), Gaps = 21/610 (3%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           LP + KS   + PA+Q++P+   + +C TL          L Q+HA +++ G+  +   +
Sbjct: 15  LPAKSKSPLAAAPAAQQHPLLPYLPQCTTL--------RALAQLHAAAVKSGLQAHPAFV 66

Query: 79  GKYLIYAI---VSLSFPMSYAHNIFSHVQDPNIFTW-NTMIRGYAE-----SANPLL--A 127
            + L        +    +SYA  +F  +  P    W NT++RGYA       A P    A
Sbjct: 67  TRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEA 126

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
             ++ +M   G+ PDT+T+  LLKA +       G Q H VA++ G     +V  +L++M
Sbjct: 127 ARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINM 186

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           YA  G  + A  +F  +    +V++N++I     + +P EAL LFREM ++G++    T+
Sbjct: 187 YAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTL 246

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           +S+ SACA LGAL LGR  H YV KV L   V VN AL+D Y KCG +  A  VF+ M  
Sbjct: 247 ISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMES 306

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           R+  +WS ++V  A + +G+EA+ LF+EM+  G  P +VTF+GVLYACSH G+V EG  Y
Sbjct: 307 RDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQY 366

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  M+ E+G++P I+H+GC+ DLL R+G + +AYE+I  + + P A++WRTLL AC   G
Sbjct: 367 FDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRG 425

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
            + + +     +L+L+  H GDYV+ SNL A   RW  +  VR+ M ++ V K PG S +
Sbjct: 426 DADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSI 485

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALS 546
           E+ NRV EFF GD  HP++ +   M+  + ++LKL GYVP T +VF  ++ EEEK  +L 
Sbjct: 486 EVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLR 545

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
           YHSEK+AI+F L+NT+PGT +RVVKNLRVC DCH   KL+S V++R I++RD +RFHHF+
Sbjct: 546 YHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFE 605

Query: 607 DGHCSCRDYW 616
           DG CSC DYW
Sbjct: 606 DGVCSCGDYW 615


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/600 (41%), Positives = 375/600 (62%), Gaps = 18/600 (3%)

Query: 20  PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIR-HGVPLN-NPD 77
           P ++ ++  + P    NPI  ++ KC        +S+ +L Q+ A++I+ H   ++ N  
Sbjct: 21  PLKIDTVNPNPP----NPIL-LISKC--------NSERELMQIQAYAIKSHQEDVSFNTK 67

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           L  +   +    S  MSYA ++F  + +P+I  +N++ RGY+ S NPL    L+ ++   
Sbjct: 68  LINFCTESPTESS--MSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILED 125

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            + PD +T+P LLKA +    +  G Q H ++++ G +  V+V  +L++MY     V  A
Sbjct: 126 DLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAA 185

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             VF+ + E  +V +N++I G+A   +PNEAL+LFREM  + ++P+  T++S+ S+CA L
Sbjct: 186 RCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALL 245

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           G+L LG+  H Y  K G    V VN AL+D ++KCG +  A  +F  MR ++  +WS ++
Sbjct: 246 GSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMI 305

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           V  A +G  + ++ +F+ M      P E+TF+G+L ACSH G+V+EG  YF  M  E+GI
Sbjct: 306 VAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGI 365

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
           +P I+H+G MVDLLGRAG ++ AYE+I  + + P  ++WR LL AC+ H +  +AE    
Sbjct: 366 VPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSE 425

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            +L+L+  H GDYV+LSNLYA  ++W  V  +R+ M   +  K PG S +E+ N V EFF
Sbjct: 426 RILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFF 485

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAF 556
            GD     T ++H  L E+ K+LKL GYVP T  V  AD+ ++EKE  L YHSEK+AIAF
Sbjct: 486 SGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAF 545

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L+NT PGT +RVVKNLRVC DCH A KLIS ++ R++V+RD  RFHHF+DG CSCRD+W
Sbjct: 546 GLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/591 (42%), Positives = 367/591 (62%), Gaps = 6/591 (1%)

Query: 28  HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
           H +   Q  PIT   +   TLLQ C+S    LKQ+HA  +  G+ + N       +   +
Sbjct: 24  HGSSTGQSLPITK--QALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNAL--ITQLLTSL 79

Query: 88  SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
           +L   MSYA  +F  +  P  F WNT+++GY ++  P  AV +Y KM   G++PD  T+P
Sbjct: 80  TLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFP 139

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           F++KA ++LA++  G   H   +++G E +  V+  L+ MY  FG +  A  +F  M ER
Sbjct: 140 FVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVER 199

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           DLVAWN++I      G  ++AL  FREM   G++PD  T+VS  SAC  LG L  G   +
Sbjct: 200 DLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIY 259

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            +  + G+  N+ V+NA LD  +KCG +  A  +F EM +RN +SWST++ G AVNG  +
Sbjct: 260 EFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESE 319

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDEYGIMPKIEHFG 385
           +AL LF  M+  G  P  VTF+ VL ACSH G V+EG+ YF  M   D+  I P+ EH+ 
Sbjct: 320 KALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYA 379

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDLLGR+G +++AY +I+ M +  +  IW  LLGAC IH +  + +     L +L P+
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPE 439

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
            +  +VLLSN+YA   RW  V++VR+ M K+  +K   +S VE    +   + GD+SHPQ
Sbjct: 440 IASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQ 499

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           +  I A L ++ K++K  GY+P T++VF D+E+EEKE  LS HSEK+AIAF L+N +P  
Sbjct: 500 SASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKF 559

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P+RV+KNLR+C DCH   KL+S++  REI++RD++RFHHFK+G CSC+D+W
Sbjct: 560 PIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/618 (40%), Positives = 372/618 (60%), Gaps = 33/618 (5%)

Query: 30  TPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           TP SQ +  ++  +  + LLQ C S+  +L+Q+H   ++ G+ L+     K L +     
Sbjct: 7   TPTSQLSSESNAAQT-LHLLQRC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPN 64

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  ++YA  +F  +  PN F WNTMIRGY+ S  P  A+ LY  M    +  + +T+PFL
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFL 124

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA S ++     +Q H+  I+ GF S ++  NSL+++Y+  G +K A  +F+ + +RD 
Sbjct: 125 LKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184

Query: 210 VAWNSVINGFA-------------------------------SNGKPNEALTLFREMASE 238
           V+WNS+I+G+                                  GKP EAL LF  M + 
Sbjct: 185 VSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA 244

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++ D   +VS   ACA+LG L  G+  H Y+ K  +  +  +   L+D Y+KCG +  A
Sbjct: 245 GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 304

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VFR+M ++    W+ ++ G A++G G+EALE F +M+  G  P ++TF G+L ACSH 
Sbjct: 305 IEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 364

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V E    F+ M+  +G  P IEH+GCMVDLLGRAGL+K+A E I+NM + PNA IW  
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC IHG+  + +     L+Q++P H G Y+ L++++A    W     VRR M ++ V
Sbjct: 425 LLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            K PG S++ +     EF  GD SHPQ +EI  ML +I ++L+ EGY P+  ++  D+E+
Sbjct: 485 SKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLED 544

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           +EKE A+ +HSEK+A+ F L++T PG  +R+VKNLRVC DCH  IKLISKVY+REI++RD
Sbjct: 545 KEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRD 604

Query: 599 RSRFHHFKDGHCSCRDYW 616
           R+RFH FKDG+C+C DYW
Sbjct: 605 RTRFHLFKDGNCTCGDYW 622


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/560 (43%), Positives = 357/560 (63%), Gaps = 4/560 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQ+H+  IR G+ L+   +G  L+  YA  +    +  +  +F  + + N+ +W  +I  
Sbjct: 76  KQLHSRVIRLGLALDVC-VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134

Query: 118 YAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           YA+S      A+EL+ KM    I+P+  ++  +LKA   L+D   GEQ +S A++ G  S
Sbjct: 135 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 194

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL+ MYA  G ++DA K F+++ E++LV++N++++G+A N K  EA  LF E+A
Sbjct: 195 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 254

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G+    +T  SL S  A +GA+  G + H  + K G   N  + NAL+  YS+CG I 
Sbjct: 255 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 314

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF EM  RN +SW++++ G A +GF   ALE+F +M   G  P E+T+V VL ACS
Sbjct: 315 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 374

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  +F  M  E+GI+P++EH+ CMVDLLGR+GL+ +A E+I +M +  +A++W
Sbjct: 375 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 434

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLLGAC +HG++ +   A   +L+ EP     Y+LLSNL+A   +W +V ++R++M + 
Sbjct: 435 RTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKER 494

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ NRV  F +G+ SHPQ  +I+  L ++  K+K  GY+P T+ V  DI
Sbjct: 495 NLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDI 554

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE+KE  L  HSEKIA+AF L++T+   P+R+ KNLRVC DCH AIK IS    REIVV
Sbjct: 555 EEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 614

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHH K+G CSC DYW
Sbjct: 615 RDSNRFHHIKNGVCSCNDYW 634



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 177/342 (51%), Gaps = 8/342 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A+ +F  + + N+ TW  MI  +A+      A++L+  M +SG  PD  TY  +L A ++
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY---AAFGHVKDACKVFELMSERDLVAW 212
           L  + +G+Q HS  IR G    V V  SLV MY   AA G V D+ KVFE M E ++++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 213 NSVINGFASNGKPN-EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
            ++I  +A +G+ + EA+ LF +M S  + P+ ++  S+  AC  L     G + ++Y  
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+G++    V N+L+  Y++ G +  A++ F  + ++N VS++ +V G A N   +EA  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDL 390
           LF E+   G      TF  +L   +  G + +G     R +K  Y     I     ++ +
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISM 306

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             R G ++ A++ + N +   N + W +++     HG +  A
Sbjct: 307 YSRCGNIEAAFQ-VFNEMEDRNVISWTSMITGFAKHGFATRA 347


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/607 (42%), Positives = 377/607 (62%), Gaps = 23/607 (3%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           LP + KS     P  Q++P+ S +  C +L          L Q+HA +++ G+  +   +
Sbjct: 14  LPAKPKS-----PPPQQHPVLSHLPHCTSL--------RTLAQLHAAAVKAGLAAHPALV 60

Query: 79  GKYLIYAIVSLSFP--MSYAHNIFSHVQDPNIFTW-NTMIRGYAESANP-----LLAVEL 130
            + L       + P  ++YA  +F  V  P    W NT++RGYA S+NP       AV +
Sbjct: 61  TRLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRV 120

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           + +M   G+ PDT+T+  LLKA +       G Q H++A++ G     +V+ +L++MYA 
Sbjct: 121 FVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAE 180

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G  + A  +F       +V++N++I     + +P EAL LFREM  +G++P   T++S+
Sbjct: 181 CGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISV 240

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SACA LGAL LGR  H YV K+GL   V V+ AL+D Y+KCG +  A  VF+ M  ++ 
Sbjct: 241 LSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDR 300

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
            +WS ++V  A +G+G+EA+ LF+EM+  G  P ++TF+GVLYACSH G+V EG  YF  
Sbjct: 301 QAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDD 360

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           MKD +GI+P I+H+GC+ DLL R+G +++AY++I  + + P  ++WRTLL AC  HG   
Sbjct: 361 MKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFE 419

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           + +     +L+L+  H GDYV+ SNL A    W  +  VR+ M ++ V K PG S +E+ 
Sbjct: 420 LGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEID 479

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHS 549
           N V EFF GD  HP+++E   M+ E+  +LKL GYVP T +VF  ++ EEEK  +L YHS
Sbjct: 480 NTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHS 539

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+AIAF L+NTAPG  +RVVKNLRVC DCH   KL+S V++R I++RD +RFHHF++G 
Sbjct: 540 EKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGI 599

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 600 CSCGDYW 606


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/560 (43%), Positives = 357/560 (63%), Gaps = 4/560 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQ+H+  IR G+ L+   +G  L+  YA  +    +  +  +F  + + N+ +W  +I  
Sbjct: 71  KQLHSRVIRLGLALDVC-VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129

Query: 118 YAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           YA+S      A+EL+ KM    I+P+  ++  +LKA   L+D   GEQ +S A++ G  S
Sbjct: 130 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 189

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL+ MYA  G ++DA K F+++ E++LV++N++++G+A N K  EA  LF E+A
Sbjct: 190 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 249

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G+    +T  SL S  A +GA+  G + H  + K G   N  + NAL+  YS+CG I 
Sbjct: 250 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 309

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF EM  RN +SW++++ G A +GF   ALE+F +M   G  P E+T+V VL ACS
Sbjct: 310 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 369

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  +F  M  E+GI+P++EH+ CMVDLLGR+GL+ +A E+I +M +  +A++W
Sbjct: 370 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 429

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLLGAC +HG++ +   A   +L+ EP     Y+LLSNL+A   +W +V ++R++M + 
Sbjct: 430 RTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKER 489

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ NRV  F +G+ SHPQ  +I+  L ++  K+K  GY+P T+ V  DI
Sbjct: 490 NLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDI 549

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE+KE  L  HSEKIA+AF L++T+   P+R+ KNLRVC DCH AIK IS    REIVV
Sbjct: 550 EEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 609

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHH K+G CSC DYW
Sbjct: 610 RDSNRFHHIKNGVCSCNDYW 629



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 177/342 (51%), Gaps = 8/342 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A+ +F  + + N+ TW  MI  +A+      A++L+  M +SG  PD  TY  +L A ++
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY---AAFGHVKDACKVFELMSERDLVAW 212
           L  + +G+Q HS  IR G    V V  SLV MY   AA G V D+ KVFE M E ++++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 213 NSVINGFASNGKPN-EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
            ++I  +A +G+ + EA+ LF +M S  + P+ ++  S+  AC  L     G + ++Y  
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+G++    V N+L+  Y++ G +  A++ F  + ++N VS++ +V G A N   +EA  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDL 390
           LF E+   G      TF  +L   +  G + +G     R +K  Y     I     ++ +
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISM 301

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             R G ++ A++ + N +   N + W +++     HG +  A
Sbjct: 302 YSRCGNIEAAFQ-VFNEMEDRNVISWTSMITGFAKHGFATRA 342


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/608 (40%), Positives = 367/608 (60%), Gaps = 50/608 (8%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL--SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           L Q+HA  I+ G   +     + L +   S      + YAH IF+ +   N F+WNT+IR
Sbjct: 39  LSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIR 98

Query: 117 GYAESA--NPLLAVEL-YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           G++ES     L+A+ L Y  M    ++P+  T+P +LKA +K   ++ G+Q H +A++ G
Sbjct: 99  GFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYG 158

Query: 174 FESLVFVQNSLVHMYAAFGHVKDA------------------------------------ 197
           F    FV ++LV MY   G +KDA                                    
Sbjct: 159 FGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGY 218

Query: 198 -----CK----VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
                CK    +F+ M +R +V+WN++I+G++ NG   +A+ +FREM    + P+  T+V
Sbjct: 219 MRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLV 278

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S+  A + LG+L LG   H Y    G+  +  + +AL+D YSKCGII  A  VF  + + 
Sbjct: 279 SVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE 338

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           N ++WS ++ G A++G   +A++ F +M   G  P +V ++ +L ACSH G+V+EG  YF
Sbjct: 339 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            +M    G+ P+IEH+GCMVDLLGR+GL+ +A E+I NM + P+ VIW+ LLGAC + G+
Sbjct: 399 SQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             + +   + L+ + P  SG YV LSN+YA +  W  V E+R  M ++ ++K PG SL++
Sbjct: 459 VEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           +   + EF + D SHP+ +EI++ML EI+ KL+L GY P T  V  ++EEE+KE+ L YH
Sbjct: 519 IDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYH 578

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEKIA AF L++T+PG P+R+VKNLR+C DCH +IKLISKVY R+I VRDR RFHHF+DG
Sbjct: 579 SEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDG 638

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 639 SCSCMDYW 646


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/509 (46%), Positives = 336/509 (66%), Gaps = 8/509 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGEQTHSVA 169
           WNTMIRGY+ S NP  A+ LY  M   GI P +  T+PFLL + ++L+ +  G + HS  
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I++GFES +FV+N+L+H+Y+ FG++  A  +F+    RDLV++N++I G+A   +P  AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDF 288
            LF EM +     D  T+V++ SACA LGA  LG+R  H Y+     + N  +  A++D 
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 289 YSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           Y+KCG I +A  +FR + K  +    +++++ GLA +G G+ A+ +F+E+   G  P EV
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TFVGVL AC H G+++EG   F+ M + YGI P++EH+GCMVDLLGR G +++AY+ +Q 
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M    N+VIWR LL AC  HG+  I EIA   LL++E +H   YVLLSN+ A   +W   
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
           ++VR+ M    ++K PG S +ELG  +  F   D+SHPQ +EI  ML ++  +LK  GYV
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P T  V  DI+EEEKE  +SYHSEK+A+AF L+  +P   +R+VKNLR+CADCH A KL+
Sbjct: 418 PNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLV 477

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           S++Y REI VRD  RFHHF++G CSC D+
Sbjct: 478 SEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 34/339 (10%)

Query: 17  SDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVP-- 72
           SD P     LY S  A    P  +       LL  CA  SS     +VH+  I+HG    
Sbjct: 12  SDNPREAIVLYMSMIAKGIAPPNNFTFP--FLLNSCARLSSLEPGHEVHSHIIKHGFESD 69

Query: 73  --LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
             + N  +  Y ++  ++L      A  +F      ++ ++NTMI+GYAE   P  A+ L
Sbjct: 70  LFVRNALIHLYSVFGNLNL------ARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCL 123

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV----- 185
           + +M  S    D  T   +L A ++L    +G++ +   I NG    VF QN+++     
Sbjct: 124 FGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENG----VFNQNTILTAAVM 175

Query: 186 HMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
            MYA  G +  A ++F  + +  +    +NS+I G A +G    A+T+FRE+ S G++PD
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 235

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
             T V +  AC   G +  G++    ++   G+   +     ++D   + G +  A  + 
Sbjct: 236 EVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLV 295

Query: 303 REMR-KRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
           ++M  + N+V W  L+     +G    G+ A +   EME
Sbjct: 296 QKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 334


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/521 (45%), Positives = 335/521 (64%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N+ +W  +I GY  S +   A+  + K+   G+KPD+ +   +L A ++
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D   GE        +G    VFV  SL+ MY   G+++ A  +F  M E+D+V+W+++
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A NG P +AL LF +M SE ++PD YTMV + SACA LGAL LG  A + + +   
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N  +  AL+D YSKCG +  A  +F  M+K++ V W+ ++VGL++NG  K    LF  
Sbjct: 348 LSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSL 407

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           +E  G  P E TF+G+L  C+H G V+EG  +F  MK  + + P IEH+GCMVDLLGRAG
Sbjct: 408 VEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAG 467

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A++ I NM M PNAV+W  LLG C +H  + +AE     L++LEP +SG+YV LSN
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSN 527

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+   RW   +++R TM +++++K    S +E+   V EF +GD+SH  +E+I+A L E
Sbjct: 528 IYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDE 587

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++LK  G+VP TE V  DIEEEEKE  L YHSEK+A+AF L+ + P   +RVVKNLRV
Sbjct: 588 LGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRV 647

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIKLISK+  REI++RD +RFH F DG CSCRDYW
Sbjct: 648 CGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 230/418 (55%), Gaps = 19/418 (4%)

Query: 36  NPITSVVRKCITLLQVCASSKH---KLKQVHAFSIRHGVPLNNPDLGKYLIYAIV--SLS 90
           NP + V  K + +    ++  +   +LK +HA  +R  +  +N     YL+  I+  +L 
Sbjct: 6   NPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDN-----YLLNLILCCALD 60

Query: 91  F-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           F   +Y+  +FS V++PNIF WNTMIRG         A+ LY  M   G  P+  T PF+
Sbjct: 61  FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFV 120

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA ++  DVR+G + HS+ ++ G++  VFV+ SL+ +Y    +  DA KVF+ + ++++
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+W ++I G+ S+G   EA+  F+++   G++PD +++V + +ACA LG    G     Y
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +   G+  NV V  +LLD Y KCG +  A  +F  M +++ VSWST++ G A NG  ++A
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMV 388
           L+LF +M+     P   T VGVL AC+  G +D G      M ++E+   P +     ++
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALI 358

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           D+  + G V QA+E    M    + V+W  ++   +++GH+     A  +L  L  KH
Sbjct: 359 DMYSKCGSVTQAWEIFTAM-KKKDRVVWNAMMVGLSMNGHAK----AVFSLFSLVEKH 411


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/593 (41%), Positives = 366/593 (61%), Gaps = 3/593 (0%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           SL ++ P S E      V+  ++LL+ C S + + KQVHA  ++ G+  ++      +  
Sbjct: 14  SLPNNPPQSSELNAKFNVQG-LSLLKRCKSME-EFKQVHAHILKLGLFYDSFCGSNLVAT 71

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
             +S    M YA +IF  +++P  F +NTMIRG   S N   A+ LY +M   GI+PD  
Sbjct: 72  CALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNF 131

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYPF+LKA S L  ++ G Q H+   + G E  VFVQN L++MY   G ++ A  VFE M
Sbjct: 132 TYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQM 191

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGALALG 263
            E+ + +W+S+I   AS    +E L L  +M+ EG    +   +VS  SAC  LG+   G
Sbjct: 192 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFG 251

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R  H  + +     NV V  +L+D Y K G +     VF+ M ++N  S++ ++ GLA++
Sbjct: 252 RCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIH 311

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G G+EAL +F +M   G  P +V +VGVL ACSH G+V+EG   F R++ E+ I P I+H
Sbjct: 312 GRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQH 371

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GCMVDL+GRAG++K AY+ I++M + PN V+WR+LL AC +H +  I EIA   + +L 
Sbjct: 372 YGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLN 431

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
             + GDY++L+N+YA  ++W +V  +R  M ++ + +TPG SLVE    V++F   D+S 
Sbjct: 432 QHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 491

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           PQ E I+ M+ ++  +LK EGY P    V  D++E+EK   L +HS+K+AIAF L+ T+ 
Sbjct: 492 PQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSE 551

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           G+ +R+ +N+R+C DCH   K IS +Y REI VRDR+RFHHFKDG CSC+DYW
Sbjct: 552 GSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/562 (43%), Positives = 359/562 (63%), Gaps = 5/562 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS--FPMSYAHNIFSHVQDPNIFTWNTMIR 116
           L+Q+HA  + H +P+++   G   I    +LS    + YA  +FS +Q PNIF+WN+MIR
Sbjct: 4   LRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63

Query: 117 GYAESANPLL-AVELYSKMHVSGI-KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           G ++S  P    V L+ KM   G   P+T T  F+LKA S ++ +  G+Q H+  +++GF
Sbjct: 64  GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGF 123

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            S  FV+ +LV+ YA    +  A KVF+ +++R+LVAW+++I+G+A  G  NEAL LFR+
Sbjct: 124 GSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRD 183

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   GV PD  TMVS+ SACA  GAL  G+  H Y+ K  +  ++ ++ AL++ Y+KCG 
Sbjct: 184 MQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGC 243

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A+ VF  M  ++  +WS+++VGLA+NG  ++ALE F  ME     P  VTF+GVL A
Sbjct: 244 IERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSA 303

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+H G+V EG  Y+  M  E+GI+P +E +GCMVDLL RA LV+ A   ++ M + PN V
Sbjct: 304 CAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPV 362

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           IWRTLL  C    +   +E+    LL+LEP ++ +Y+LLSNLYA   +W  + +VR+ M 
Sbjct: 363 IWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMK 422

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
              +K  PG S +E+   V EF MGD SHP+  E+  +L +I+K++   G+ P   +V  
Sbjct: 423 GMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLH 482

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           ++ +EEKE+AL  HSE++AIA+ L+ T     +R+VKNLRVC DCH   K+IS  Y REI
Sbjct: 483 NVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREI 542

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           +VRDR RFH F +G CSCRD+W
Sbjct: 543 IVRDRVRFHKFVNGSCSCRDFW 564


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/560 (42%), Positives = 356/560 (63%), Gaps = 4/560 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQ+H+  IR G+ L+   +G  L+  YA  +    +  +  +F  + + N+ +W  +I  
Sbjct: 251 KQLHSRVIRLGLALDVC-VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 309

Query: 118 YAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           Y +S      A+EL+ KM    I+P+  ++  +LKA   L+D   GEQ +S A++ G  S
Sbjct: 310 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 369

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL+ MYA  G ++DA K F+++ E++LV++N++++G+A N K  EA  LF E+A
Sbjct: 370 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 429

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G+    +T  SL S  A +GA+  G + H  + K G   N  + NAL+  YS+CG I 
Sbjct: 430 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 489

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF EM  RN +SW++++ G A +GF   ALE+F +M   G  P E+T+V VL ACS
Sbjct: 490 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 549

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  +F  M  E+GI+P++EH+ CMVDLLGR+GL+ +A E+I +M +  +A++W
Sbjct: 550 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 609

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLLGAC +HG++ +   A   +L+ EP     Y+LLSNL+A   +W +V ++R++M + 
Sbjct: 610 RTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKER 669

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ NRV  F +G+ SHPQ  +I+  L ++  K+K  GY+P T+ V  DI
Sbjct: 670 NLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDI 729

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE+KE  L  HSEKIA+AF L++T+   P+R+ KNLRVC DCH AIK IS    REIVV
Sbjct: 730 EEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 789

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHH K+G CSC DYW
Sbjct: 790 RDSNRFHHIKNGVCSCNDYW 809



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 190/376 (50%), Gaps = 8/376 (2%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           ++ F ++ G    +  +G  LI   V  S  +  A+ +F  + + N+ TW  MI  +A+ 
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A++L+  M +SG  PD  TY  +L A ++L  + +G+Q HS  IR G    V V 
Sbjct: 210 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 269

Query: 182 NSLVHMY---AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN-EALTLFREMAS 237
            SLV MY   AA G V D+ KVFE M E ++++W ++I  +  +G+ + EA+ LF +M S
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             + P+ ++  S+  AC  L     G + ++Y  K+G++    V N+L+  Y++ G +  
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 389

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A++ F  + ++N VS++ +V G A N   +EA  LF E+   G      TF  +L   + 
Sbjct: 390 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 449

Query: 358 CGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
            G + +G     R +K  Y     I     ++ +  R G ++ A++ + N +   N + W
Sbjct: 450 IGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQ-VFNEMEDRNVISW 506

Query: 417 RTLLGACTIHGHSAIA 432
            +++     HG +  A
Sbjct: 507 TSMITGFAKHGFATRA 522



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 142/257 (55%), Gaps = 6/257 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W+ M+  +A ++    A+  +  M   G  P+ + +  +++A S      +GE  +
Sbjct: 92  DLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY 151

Query: 167 SVAIRNGF-ESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
              ++ G+ E+ V V   L+ M+    G +  A KVF+ M ER+LV W  +I  FA  G 
Sbjct: 152 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 211

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             +A+ LF +M   G  PD +T  S+ SAC ELG LALG++ H+ V ++GL+ +V V  +
Sbjct: 212 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 285 LLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-FGKEALELFKEMEIGG 340
           L+D Y+KC   G +  +++VF +M + N +SW+ ++     +G   KEA+ELF +M  G 
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 331

Query: 341 FVPGEVTFVGVLYACSH 357
             P   +F  VL AC +
Sbjct: 332 IRPNHFSFSSVLKACGN 348



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 3/227 (1%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD  TY  LLK+  +  + ++G+  H   +++G E    V N+L+ +Y+  G  + A  +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 201 FELM-SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           FE M ++RDLV+W+++++ FA+N    +A+  F +M   G  P+ Y   ++  AC+    
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 260 LALGRRAHTYVWKVG-LSDNVNVNNALLDFYSK-CGIIIAAQRVFREMRKRNAVSWSTLV 317
             +G   + +V K G L  +V V   L+D + K  G + +A +VF +M +RN V+W+ ++
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
              A  G  ++A++LF +ME+ G+VP   T+  VL AC+  G++  G
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 36/256 (14%)

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ + A +    M  +   PD  T   L  +C       LG+  H  + + GL  +  V 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 283 NALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           N L+  YSKCG    A+ +F  M  KR+ VSWS +V   A N    +A+  F +M   GF
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 342 VPGEVTFVGVLYACSH---------------------------CGMVDEGFSYFKRMKDE 374
            P E  F  V+ ACS+                           C ++D        +   
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 375 YGIMPKIEH-----FGCMVDLLGRAGLVKQAYEYIQNMLMP---PNAVIWRTLLGACTIH 426
           Y +  K+       +  M+    + G  + A +   +M +    P+   + ++L ACT  
Sbjct: 185 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 244

Query: 427 GHSAIAEIARSTLLQL 442
           G  A+ +   S +++L
Sbjct: 245 GLLALGKQLHSRVIRL 260


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/599 (41%), Positives = 369/599 (61%), Gaps = 25/599 (4%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKY-----LIYA--- 85
           I SV++ C  +     S     K++H FS+++G    V + N  +  Y     L+ A   
Sbjct: 112 IPSVLKACSQI-----SVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLL 166

Query: 86  --------IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
                   +VS S  +     +F      +I +W  MI GY    +      L+ +M   
Sbjct: 167 FDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEE 226

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            + P+  T   L+ +   +  V++G++ H+  +RNGF   + +  +LV MY   G ++ A
Sbjct: 227 NVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSA 286

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             +F+ M  +D++ W ++I+ +A     + A  LF +M   GV P+  TMVSL S CA  
Sbjct: 287 RAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVN 346

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           GAL +G+  H Y+ K G+  +V +  AL+D Y+KCG I  AQR+F E   R+  +W+ ++
Sbjct: 347 GALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMM 406

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G  ++G+G++AL+LF EME  G  P ++TF+G L+ACSH G+V EG   F++M  ++G+
Sbjct: 407 AGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGL 466

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
           +PK+EH+GCMVDLLGRAGL+ +AY+ I++M + PN  IW  +L AC IH +S + E+A  
Sbjct: 467 VPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAAR 526

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            LL LEP++ G  VL+SN+YA   RW +V  +R+ +    +KK PG S +E+   V +F 
Sbjct: 527 ELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFK 586

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
           MGD +HP  E+I  MLAE++KKLK  GY+P T  V  +I+EEEKE AL+YHSEK+A+AF 
Sbjct: 587 MGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFG 646

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L++TAPGTP+RVVKNLR+C DCH   KL+SK+Y R I+VRDR+RFHHF++G CSC  YW
Sbjct: 647 LISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 24/333 (7%)

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
           ++P  A+  Y+ M    I+ D+   P +LKA S+++  RMG++ H  +++NG  S VFV 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN----------------------GF 219
           N+L+ MY+  G +  A  +F+ MSERD+V+W+++I                       G+
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                  E   LF  M  E V P+  TM+SL  +C  +GA+ LG+R H Y+ + G   ++
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +  AL+D Y KCG I +A+ +F  M+ ++ ++W+ ++   A       A +LF +M   
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P E+T V +L  C+  G +D G  +F    D+ G+   +     ++D+  + G +  
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISG 386

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           A       +   +   W  ++    +HG+   A
Sbjct: 387 AQRLFSEAI-DRDICTWNVMMAGYGMHGYGEKA 418


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/645 (38%), Positives = 384/645 (59%), Gaps = 79/645 (12%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           I+LL+ C  S ++LKQ+H+ +I+ G+  +     + + +     S  M+YAH +F  +  
Sbjct: 11  ISLLEKC-KSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPH 69

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P++F WNTMI+GY++ ++P   V +Y  M  S IKPD  T+PF LK  ++   ++ G++ 
Sbjct: 70  PSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKEL 129

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING------- 218
            + A+++GF+S +FVQ + +HM++  G V  A KVF++    ++V WN +++G       
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQF 189

Query: 219 ------------------------------------FASNGKPNEALTLFREMASEGV-- 240
                                               FA+ G+ +EA  +F  M +  V  
Sbjct: 190 KISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVS 249

Query: 241 -----------------------------EPDGYTMVSLFSACAELGALALGRRAHTYVW 271
                                        +PD +TMVS+  ACA LGAL LG    T + 
Sbjct: 250 WTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCID 309

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K    ++  V NAL+D Y KCG +  A++VF+EM +++  +W+T++VGLA+NG G+EAL 
Sbjct: 310 KNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALA 369

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F  M      P E+T++GVL AC    MVD+G S+F  M  ++GI P + H+GCMVDLL
Sbjct: 370 MFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLL 425

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           G  G +++A E I NM + PN+++W + LGAC +H +  +A++A   +L+LEP++   YV
Sbjct: 426 GCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYV 485

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LL N+YA  ++W N+ +VR+ M++  +KKTPG SL+EL   V+EF  GD+SHPQ++EI+A
Sbjct: 486 LLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYA 545

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L  + + L   GY P T  VF D+ EE+KE AL  HSEK+AIA+ L+++ PG  +R+VK
Sbjct: 546 KLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVK 605

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR+C DCH   KL+S+ Y+RE++V+D++RFHHF+ G CSC ++W
Sbjct: 606 NLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/560 (42%), Positives = 356/560 (63%), Gaps = 4/560 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQ+H+  IR G+ L+   +G  L+  YA  +    +  +  +F  + + N+ +W  +I  
Sbjct: 269 KQLHSRVIRLGLALDVC-VGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 327

Query: 118 YAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           Y +S      A+EL+ KM    I+P+  ++  +LKA   L+D   GEQ +S A++ G  S
Sbjct: 328 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 387

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL+ MYA  G ++DA K F+++ E++LV++N++++G+A N K  EA  LF E+A
Sbjct: 388 VNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 447

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G+    +T  SL S  A +GA+  G + H  + K G   N  + NAL+  YS+CG I 
Sbjct: 448 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 507

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF EM  RN +SW++++ G A +GF   ALE+F +M   G  P E+T+V VL ACS
Sbjct: 508 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 567

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  +F  M  E+GI+P++EH+ CMVDLLGR+GL+ +A E+I +M +  +A++W
Sbjct: 568 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 627

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLLGAC +HG++ +   A   +L+ EP     Y+LLSNL+A   +W +V ++R++M + 
Sbjct: 628 RTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKER 687

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ NRV  F +G+ SHPQ  +I+  L ++  K+K  GY+P T+ V  DI
Sbjct: 688 NLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDI 747

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE+KE  L  HSEKIA+AF L++T+   P+R+ KNLRVC DCH AIK IS    REIVV
Sbjct: 748 EEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 807

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHH K+G CSC DYW
Sbjct: 808 RDSNRFHHIKNGVCSCNDYW 827



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 184/364 (50%), Gaps = 17/364 (4%)

Query: 9   KQPSYEEISDLPCR---VKSLYHSTPA----SQENPITSVVRKCITLLQVCASSKHKL-K 60
           K P++E + +   R   V  L+H+       +Q+N    +    I L         +L K
Sbjct: 5   KNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGK 64

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNTMIRGYA 119
            VH   ++ G+ L++  L   +  ++ S       A  IF  + +  ++ +W+ M+  +A
Sbjct: 65  LVHRKLMQSGLELDSVVLNTLI--SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFA 122

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESLV 178
            ++    A+  +  M   G  P+ + +  +++A S      +GE  +   ++ G+ E+ V
Sbjct: 123 NNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV 182

Query: 179 FVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            V   L+ M+    G +  A KVF+ M ER+LV W  +I  FA  G   +A+ LF +M  
Sbjct: 183 CVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMEL 242

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC---GI 294
            G  PD +T  S+ SAC ELG LALG++ H+ V ++GL+ +V V  +L+D Y+KC   G 
Sbjct: 243 SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGS 302

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNG-FGKEALELFKEMEIGGFVPGEVTFVGVLY 353
           +  +++VF +M + N +SW+ ++     +G   KEA+ELF +M  G   P   +F  VL 
Sbjct: 303 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 362

Query: 354 ACSH 357
           AC +
Sbjct: 363 ACGN 366


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/521 (45%), Positives = 335/521 (64%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N+ +W  +I GY  S +   A+  + K+   G+KPD+ +   +L A ++
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D   GE        +G    VFV  SL+ MY   G+++ A  +F  M E+D+V+W+++
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A NG P +AL LF +M SE ++PD YTMV + SACA LGAL LG  A + + +   
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N  +  AL+D YSKCG +  A  +F  M++++ V W+ ++VGL++NG  K    LF  
Sbjct: 348 LSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSL 407

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           +E  G  P E TF+G+L  C+H G V+EG  +F  MK  + + P IEH+GCMVDLLGRAG
Sbjct: 408 VEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAG 467

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A++ I NM M PNAV+W  LLG C +H  + +AE     L++LEP +SG+YV LSN
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSN 527

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+   RW   +++R TM +++++K    S +E+   V EF +GD+SH  +E+I+A L E
Sbjct: 528 IYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDE 587

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++LK  G+VP TE V  DIEEEEKE  L YHSEK+A+AF L+ + P   +RVVKNLRV
Sbjct: 588 LGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRV 647

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIKLISK+  REI++RD +RFH F DG CSCRDYW
Sbjct: 648 CGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 221/394 (56%), Gaps = 16/394 (4%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV--SLSF-PMSYAHNIFSHVQDPNIFTWNT 113
           ++LK +HA  +R  +  +N     YL+  I+  +L F   +Y+  +FS V++PNIF WNT
Sbjct: 30  NQLKHIHARLLRLHLDQDN-----YLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MIRG         A+ LY  M   G  P+  T PF+LKA ++  DVR+G + HS+ ++ G
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           ++  VFV+ SL+ +Y    +  DA KVF+ + ++++V+W ++I G+ S+G   EA+  F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           ++   G++PD +++V + +ACA LG    G     Y+   G+  NV V  +LLD Y KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A  +F  M +++ VSWST++ G A NG  ++AL+LF +M+     P   T VGVL 
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324

Query: 354 ACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
           AC+  G +D G      M ++E+   P +     ++D+  + G V QA+E    M    +
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAM-KRKD 381

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
            V+W  ++   +++GH+     A  +L  L  KH
Sbjct: 382 RVVWNAMMVGLSMNGHAK----AVFSLFSLVEKH 411


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/598 (41%), Positives = 369/598 (61%), Gaps = 18/598 (3%)

Query: 27  YHSTPASQENPITSVVRKCITLL--QVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI- 83
           +H  P       + +  K I  L    C +S H LKQ HA  +R G  L +  +   L+ 
Sbjct: 37  HHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTG-HLQDSYIAGSLVK 95

Query: 84  -YAIVSLSFPMSYAHN--IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
            YA VS +  +S+  +  +F  V+ PN+F WN MI+   E+  P  A+ LY +M V+  +
Sbjct: 96  SYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFR 155

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P+ +TYP +LKA S    V  G Q H+  +++G      + +S + MYA+FG + +A ++
Sbjct: 156 PNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 215

Query: 201 FELMS-ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
            +    E D V        F       EAL +F +M  E + P  + + S+ SACA LGA
Sbjct: 216 LDDKGGEVDAVCMPDRKGCFM------EALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 269

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L  GR  HTY  +  +  +  +  +L+D Y+KCG I  A  VF +M  +   SW+ ++ G
Sbjct: 270 LDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGG 329

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           LA++G  ++A++LF +M+I    P E+TFVGVL AC+H G+V +G + F  M+ EYG+ P
Sbjct: 330 LAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEP 386

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           +IEH+GC+VDLLGRAGL+ +A + + ++   P   +W  LLGAC  HG+  + E     L
Sbjct: 387 QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKIL 446

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG-NRVFEFFM 498
           L+LEP++SG Y LLSN+YA   RW  V EVR+ M +  +K TPG S+++LG   V +F +
Sbjct: 447 LELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFII 506

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD SHPQ ++I+ ML ++ ++L++EGY P    V  DI+EEEKE A+  HSEK+AI F L
Sbjct: 507 GDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGL 566

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +NT+PGT +R+VKNLRVC DCH A KLIS+VY+REI+VRDR R+HHF++G CSC+D+W
Sbjct: 567 INTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/606 (43%), Positives = 368/606 (60%), Gaps = 41/606 (6%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF-PMSYAHNIFSHVQDPN 107
           L+ C  S +++KQ HA  I  G+ L+ P     L+  +++ SF  +SYAH +F  +  P+
Sbjct: 22  LESC-KSMNQIKQTHAHLITTGLILH-PITANKLLKVLIASSFGSLSYAHQLFDQIPKPD 79

Query: 108 IFTWNTMIRGYA---ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +F +NTMI+ +A    S++  + + L S + VSG  P+ +T+ F+ KA      V  GEQ
Sbjct: 80  VFIYNTMIKAHAVIPTSSHNSMRIFL-SMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQ 138

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL--------------------- 203
               AI+ G ES +FV N+++ MYA +G V +A +VF+                      
Sbjct: 139 IRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGE 198

Query: 204 ----------MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                     MSERD+V+W ++I G+   G   EAL LF EM   G  P+ +T+ S  +A
Sbjct: 199 IGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAA 258

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAV 311
           CA L AL  GR  H Y+ K  +  N  +  +LLD Y+KCG I  A +VF +    K    
Sbjct: 259 CANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVW 318

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            W+ ++ G A++G  KEA++LF++M++    P +VTFV +L ACSH  +V+EG  YFK M
Sbjct: 319 PWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSM 378

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
              YGI P+IEH+GCMVDLLGR+GL+K+A E + NM M P+A IW  LLGAC IH     
Sbjct: 379 ASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIER 438

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            +     + +L+  H G +VLL+NLY+   +W   + VR+ +     KKTPG S +EL  
Sbjct: 439 GQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNG 498

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI-EEEEKEDALSYHSE 550
              +F +GDRSHPQT++++  L E+T KLK  GYVP    V  DI +EE+KE ALS HSE
Sbjct: 499 VFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSE 558

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L+NT PGT +R+VKNLRVCADCH A K ISKVY REI+VRDR R+HHFKDG C
Sbjct: 559 KLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFC 618

Query: 611 SCRDYW 616
           SC+DYW
Sbjct: 619 SCKDYW 624


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/521 (45%), Positives = 334/521 (64%), Gaps = 5/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  + D N+ +W TMI  Y+ +     A+E    M   G++P+  TY  +L+A   
Sbjct: 19  AQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDG 78

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L ++R   Q H   I+ G +S VFV+++L+ +Y+ +G +++A +VF+ M   DLV W+S+
Sbjct: 79  LFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSI 135

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA N   +EAL LF+ M   G      T+ S+  AC  L  L LGR+ H +V K   
Sbjct: 136 IAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY-- 193

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +NNALLD Y KCG +  A  VF  M +++ +SWST++ GLA NG+ KEAL+LF+ 
Sbjct: 194 DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFES 253

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ G  P  VT VGVL+ACSH G+V+EG  YF  MK+ +GI P  EH+GCM+DLLGRAG
Sbjct: 254 MKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAG 313

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I  M   P+AV WR LL AC +H +  +A  A   +L+L+P+ +G YVLLSN
Sbjct: 314 RLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSN 373

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  QRW +V EVRRTM    +KK PG S +E+  ++  F +GDRSHPQ  EI+  L +
Sbjct: 374 IYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQ 433

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  KL   GYVP T  V  D+E E+ +D+L YHSEK+AI F L++   G  +R+ KNLR+
Sbjct: 434 LIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRI 493

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCHL  KL++K+  R IV+RD  R+HHF+DG CSC D+W
Sbjct: 494 CGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 144/271 (53%), Gaps = 11/271 (4%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F+ N L++MY  FG + DA  VF+ M +R++V+W ++I+ +++    ++AL     M  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV P+ +T  S+  AC  L  L   R+ H  + K+GL  +V V +AL+D YS+ G +  A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            RVF EM   + V WS+++ G A N  G EAL LFK M+  GF+  + T   VL AC+  
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 359 GMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            +++ G   +   +K +  ++        ++D+  + G ++ A      M+   + + W 
Sbjct: 178 ALLELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRMV-EKDVISWS 232

Query: 418 TLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           T++     +G+S  A+       +L ++P +
Sbjct: 233 TMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/523 (43%), Positives = 341/523 (65%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   ++ +WN  I GYAE+ N   A+EL+ KM  + ++PD  T   +L A ++
Sbjct: 188 AHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQ 247

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF   + + N+L+ +Y+  G ++ AC +F+ +S +D+++WN++
Sbjct: 248 SGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTL 307

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF++M   G +P+  TM+S+ SACA LGA+ +GR  H Y+ K   
Sbjct: 308 IGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLK 367

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AAQ+VF  M  R+  SW+ ++ G A++G    A ++F
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIF 427

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M  +Y +MPK+EH+GCM+DL G 
Sbjct: 428 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGH 487

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A + I  M M P+ VIW +LL AC +HG+  + E     L+++EP++ G YVLL
Sbjct: 488 SGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLL 547

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA  +RW  V + R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 548 SNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 607

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 667

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 668 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 226/423 (53%), Gaps = 41/423 (9%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQ 104
           ++LL  C + +  L+ +HA  I+ G+   N  L K L   ++S  F  + YA ++F  +Q
Sbjct: 6   LSLLHXCKTLQ-SLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQ 64

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +P +  WNTM RG+A S++P+ A++LY  M   G+ P+++T+PFLLK+ +K    + G+Q
Sbjct: 65  EPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQ 124

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA------------- 211
            H   ++ GF+  +++  SL+ MY   G ++DA KV +  S RD+V+             
Sbjct: 125 LHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGX 184

Query: 212 ------------------WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                             WN+ I+G+A  G   EAL LF++M    V PD  TMV++ SA
Sbjct: 185 IESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSA 244

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA+ G++ LGR+ H+++   G   N+ + NAL+D YSKCG +  A  +F+ +  ++ +SW
Sbjct: 245 CAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISW 304

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----FSYFK 369
           +TL+ G       KEAL LF++M   G  P +VT + +L AC+H G +D G        K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDK 364

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           R+K   G+         ++D+  + G ++ A +   +ML   +   W  ++    +HG +
Sbjct: 365 RLK---GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML-NRSLSSWNAMIFGFAMHGRA 420

Query: 430 AIA 432
             A
Sbjct: 421 NAA 423


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/578 (43%), Positives = 355/578 (61%), Gaps = 6/578 (1%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           +++ P+T  +     LL+  +S   +LK++HA  IR G    N  L + L   +  L   
Sbjct: 3   AKQTPLTKQMLS--ELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLV--LVGD 58

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M YA  +F  +  P IF WNT+ +GY  +  P  +V LY KM   G++PD  TYPF++KA
Sbjct: 59  MCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKA 118

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           IS+L  +  G   H+  ++NGFE L  V   LV MY  FG +  A  +FE M  +DLVAW
Sbjct: 119 ISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ I      G    AL  F +M ++ V+ D +T+VS+ SAC +LG+L +G   +    K
Sbjct: 179 NAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARK 238

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             +  N+ V NA LD + KCG   AA+ +F +M++RN VSWST++VG A+NG   EAL L
Sbjct: 239 EEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALAL 298

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK--DEYGIMPKIEHFGCMVDL 390
           F  M+  G  P  VTF+GVL ACSH G+V+EG  YF  M   ++  + P+ EH+ CMVDL
Sbjct: 299 FTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDL 358

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGR+GL+++AYE+I+ M + P+  IW  LLGAC +H    + +     L++  P     +
Sbjct: 359 LGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYH 418

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   +W  V +VR  M K   KK   +S VE   ++  F  GD SHPQ++ I+
Sbjct: 419 VLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIY 478

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             L EI KK++  GYVP T +VF D+E EEKE +LS+HSEK+AIAF L+N   G P+RV+
Sbjct: 479 EKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVM 538

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           KNLR C DCH+  K +S++ SREI++RD++RFHHF++G
Sbjct: 539 KNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/557 (42%), Positives = 349/557 (62%), Gaps = 42/557 (7%)

Query: 102 HVQDPNI--FTWNTMIRGYAES-ANPL----LAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           H   P +  F WNT+IR + ++ A P       + ++ +M   G++PD HT+PFLL++ +
Sbjct: 16  HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA 75

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE------------ 202
             + + +G   H+  +R G     FVQ SL+ MY++ G++  A +VF+            
Sbjct: 76  SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNS 135

Query: 203 -------------------LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV--- 240
                              +M ER++++W+ +ING+   G+  EAL LFREM   GV   
Sbjct: 136 IINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 195

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            P+ +TM  + +AC  LGAL  G+ AH Y+ K G+  +V +  AL+D Y+KCG +  A  
Sbjct: 196 RPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATW 255

Query: 301 VFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           VF  +   ++ ++WS ++ GLA++G  +E + LF +M   G  P  VTF+ V  AC H G
Sbjct: 256 VFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGG 315

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG  Y +RM ++Y I+P I+H+GCMVDL GRAG +K+A+  +++M M P+ ++W  L
Sbjct: 316 LVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGAL 375

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L    +HG     E+A   L++LEP +SG YVLLSN+YA   RW +V+ VR  M    +K
Sbjct: 376 LSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIK 435

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG SL+E+G  + EFF+GD SHP+T +IH ML EI ++LK+EGYV  T+ V  D++EE
Sbjct: 436 KVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEE 495

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE ALS HSEK+A+A+  + T+PGTP+R+VKNLR+C DCH+AIK+ISKV+ REI+VRD 
Sbjct: 496 GKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDC 555

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF  G CSCRDYW
Sbjct: 556 NRFHHFTQGLCSCRDYW 572



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 75  NPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
            PDL  +   +I++ +F    +  A N+F+ + + N+ +W+ MI GY        A+ L+
Sbjct: 127 QPDLPSW--NSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF 184

Query: 132 SKMHVSG---IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188
            +M + G   ++P+  T   +L A  +L  +  G+  H+   + G    V +  +L+ MY
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 244

Query: 189 AAFGHVKDACKVFE-LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           A  G V+ A  VF  L   +D++AW+++I+G A +G   E + LF +M ++GV P+  T 
Sbjct: 245 AKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTF 304

Query: 248 VSLFSACAELGALALGR---RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           +++F AC   G ++ G+   R  T  + +     +     ++D Y + G I  A  V + 
Sbjct: 305 LAVFCACVHGGLVSEGKDYLRRMTEDYSI--IPTIQHYGCMVDLYGRAGRIKEAWNVVKS 362

Query: 305 M-RKRNAVSWSTLVVGLAVNG 324
           M  + + + W  L+ G  ++G
Sbjct: 363 MPMEPDVLVWGALLSGSRMHG 383


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/526 (44%), Positives = 342/526 (65%), Gaps = 2/526 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   ++ +WN MI GYAE+ N   A+EL+ +M  + ++PD  T   ++ A
Sbjct: 170 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 229

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++ A + +G Q HS    +GF S + + N+L+ +Y   G V+ AC +FE +S +D+++W
Sbjct: 230 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 289

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 349

Query: 273 --VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G+++  +   +L+D Y+KCG I AAQ+VF  +  R+  SW+ ++ G A++G    A 
Sbjct: 350 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 409

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++F  M      P ++TFVG+L ACSH GM+D G   F+ MK++Y I PK+EH+GCM+DL
Sbjct: 410 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 469

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LG +GL K+A E I  M M P+ VIW +LL AC +HG+  + E     L+++EPK+ G Y
Sbjct: 470 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSY 529

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   RW  V ++R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+
Sbjct: 530 VLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 589

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +V
Sbjct: 590 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 649

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 650 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 226/424 (53%), Gaps = 42/424 (9%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRG 117
           L+ +HA  I+ G+   N  L K + + ++S  F  + YA ++F  +Q+PN+  WNTM RG
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           +A S++P+ A+ LY  M   G+ P+ +T+PFLLK+ +K    R G+Q H   ++ G++  
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA-------------------------- 211
           ++V  SL+ MY   G ++DA KVF+  S RD+V+                          
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 212 -----WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
                WN++I+G+A  G   EAL LF+EM    V PD  TMVS+ SACA+  ++ LGR+ 
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H+++   G   N+ + NAL+D Y KCG +  A  +F  +  ++ +SW+TL+ G       
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----FSYFKRMKDEYGIMPKIE 382
           KEAL LF+EM   G  P +VT + +L AC+H G ++ G        KR+K   G+     
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK---GVANASS 359

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLL 440
           H   ++D+  + G ++ A +   ++L   +   W  ++    +HG  ++A    +R    
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSIL-NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN 418

Query: 441 QLEP 444
           ++EP
Sbjct: 419 EIEP 422


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/524 (43%), Positives = 340/524 (64%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   ++ +WN MI GYA+      A+ L+  M  + + P+  T   +L A
Sbjct: 211 MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSA 270

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++   + +G    S     G  S + + N+L+ MY+  G ++ A ++F+ M ERD+++W
Sbjct: 271 CAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISW 330

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N +I G+       EAL LFREM + GVEP   T +S+  +CA LGA+ LG+  H Y+ K
Sbjct: 331 NVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK 390

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
              S + +++ +L+D Y+KCG I+AA++VF  M+ ++  SW+ ++ GLA++G   +A EL
Sbjct: 391 NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFEL 450

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F +M   G  P E+TFVG+L AC H G+VD G  +F  M  +Y I PK +H+GCM+DLLG
Sbjct: 451 FSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLG 510

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL ++A   +QNM + P+  IW +LLGAC  HG   + E+    L +LEP + G YVL
Sbjct: 511 RAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVL 570

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA   +W +V  +R  +    +KK PG + +E+ N V EF +GD+ HPQ+E+I+ M
Sbjct: 571 LSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRM 630

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+ ++LK+ G+V  T  V  D++EE KE ALS+HSEK+AIAF L++T PGTP+R++KN
Sbjct: 631 LEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKN 690

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC +CH A KLISK+++REI+ RDR+RFHHFKDG CSC DYW
Sbjct: 691 LRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/547 (42%), Positives = 339/547 (61%), Gaps = 32/547 (5%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   N+F+WN++I   A S + + A+  +S M    +KP+  T+P  +K+ S L D+  
Sbjct: 35  YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 94

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA------------------------ 197
           G Q H  A+  GFE  +FV ++LV MY+  G ++DA                        
Sbjct: 95  GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154

Query: 198 -------CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVS 249
                   +VF+ M+ERD+++WNS+I  +A NG   E++ +F  M  +G +  +  T+ +
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  ACA  G+  LG+  H  V K+GL  NV V  +++D Y KCG +  A++ F  MR++N
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN 274

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
             SWS +V G  ++G  KEALE+F EM + G  P  +TFV VL ACSH G+++EG+ +FK
Sbjct: 275 VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK 334

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  E+ + P +EH+GCMVDLLGRAG +K+A++ I+ M + P+ V+W  LLGAC +H + 
Sbjct: 335 AMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNV 394

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            + EI+   L +L+PK+ G YVLLSN+YA   RW +V+ +R  M    + K PG SLV++
Sbjct: 395 DLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 454

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
             RV  F +GDR HPQ E+I+  L +++ KL+  GYVP   +V  D+  EEKE  L  HS
Sbjct: 455 KGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHS 514

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+AF ++NT PGT + ++KNLRVC DCH AIK ISK+  REIVVRD  RFHHF+DG 
Sbjct: 515 EKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGL 574

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 575 CSCGDYW 581



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 57/318 (17%)

Query: 42  VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHN 98
           ++ C  LL +     H  +Q H  ++  G     PDL  ++  A+V +      +  A  
Sbjct: 83  IKSCSALLDL-----HSGRQAHQQALIFGF---EPDL--FVSSALVDMYSKCGELRDART 132

Query: 99  IFSHVQDPNIFTWNTMIRGYAE--------------------SANPLLAV---------- 128
           +F  +   NI +W +MI GY +                    S N ++AV          
Sbjct: 133 LFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTES 192

Query: 129 -ELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
            E++ +M   G I  +  T   +L A +     R+G+  H   I+ G ES VFV  S++ 
Sbjct: 193 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 252

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G V+ A K F+ M E+++ +W++++ G+  +G   EAL +F EM   GV+P+  T
Sbjct: 253 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 312

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN------NALLDFYSKCGIIIAAQR 300
            VS+ +AC+  G L  G     + W   +S   +V         ++D   + G +  A  
Sbjct: 313 FVSVLAACSHAGLLEEG-----WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFD 367

Query: 301 VFREMRKR-NAVSWSTLV 317
           + + M+ R + V W  L+
Sbjct: 368 LIKGMKLRPDFVVWGALL 385



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 12/197 (6%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           ++H      E    +V    + L    + S+   K +H   I+ G+  +N  +G  +I  
Sbjct: 195 IFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE-SNVFVGTSIIDM 253

Query: 86  IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
                  +  A   F  +++ N+ +W+ M+ GY    +   A+E++ +M+++G+KP+  T
Sbjct: 254 YCKCG-KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 312

Query: 146 YPFLLKAISKLADVRMG-----EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           +  +L A S    +  G       +H   +  G E        +V +    G++K+A  +
Sbjct: 313 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY----GCMVDLLGRAGYLKEAFDL 368

Query: 201 FELMSER-DLVAWNSVI 216
            + M  R D V W +++
Sbjct: 369 IKGMKLRPDFVVWGALL 385


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/523 (44%), Positives = 343/523 (65%), Gaps = 3/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  +WN MI GYA+S     A+  + +M  + + P+  T   +L A ++
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G    S    +G  S + + N+L+ MY+  G +  A  +FE + E+D+++WN +
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G++      EAL LFR+M    VEP+  T VS+  ACA LGAL LG+  H Y+ K  +
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           GL+ N ++  +L+D Y+KCG I AA++VF  M+ ++  SW+ ++ GLA++G    ALELF
Sbjct: 397 GLT-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           ++M   GF P ++TFVGVL ACSH G+V+ G   F  M ++Y I PK++H+GCM+DLLGR
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AGL  +A   ++NM M P+  IW +LLGAC +HG+  + E A   L +LEP++ G YVLL
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW +V  +R  +  + +KK PG S +E+ + V EF +GD+ H Q+++I+ ML
Sbjct: 576 SNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKML 635

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            EI + L+  G+VP T  V  D++EE KE +LS+HSEK+AIAF L++T P T +R+VKNL
Sbjct: 636 DEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNL 695

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH AIKLISK+++REI+ RDR+RFHHFKDG CSC DYW
Sbjct: 696 RVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 230/418 (55%), Gaps = 33/418 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +TLL  C S ++ LKQ+H+  I+ G+      L K + +  +S    +SYA  +F  ++ 
Sbjct: 36  LTLLSTCKSFQN-LKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN F WNTMIRG + S++P+ A++ Y +M + G++P+++T+PFLLK+ +K+   + G+Q 
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------------- 194
           H   ++ G ES  FV  SL++MYA  G +                               
Sbjct: 155 HGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCL 214

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            DA ++FE +  RD V+WN++I G+A +G+  EAL  F+EM    V P+  TMV++ SAC
Sbjct: 215 DDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSAC 274

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A+ G+L LG    +++   GL  N+ + NAL+D YSKCG +  A+ +F  + +++ +SW+
Sbjct: 275 AQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWN 334

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ G +     KEAL LF++M+     P +VTFV +L AC++ G +D G      +  +
Sbjct: 335 VMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK 394

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +  +     +  ++D+  + G ++ A +    M  P +   W  ++    +HGH+ +A
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM-KPKSLGSWNAMISGLAMHGHANMA 451


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/587 (41%), Positives = 365/587 (62%), Gaps = 17/587 (2%)

Query: 36   NPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSL 89
            N IT V+     LL  C   ++ H  +++H+  ++ G    + + N  +  Y      + 
Sbjct: 445  NKITYVI-----LLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMY------AR 493

Query: 90   SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
               +  A  +F+ +   +I +W  MI G A+S     A+ ++  M  +G+KP+  TY  +
Sbjct: 494  CGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSI 553

Query: 150  LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
            L A S  A +  G + H   I  G  +   V N+LV+MY+  G VKDA +VF+ M++RD+
Sbjct: 554  LNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613

Query: 210  VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
            VA+N++I G+A++    EAL LF  +  EG++PD  T +++ +ACA  G+L   +  H+ 
Sbjct: 614  VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSL 673

Query: 270  VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
            V K G   + ++ NAL+  Y+KCG    A  VF +M KRN +SW+ ++ G A +G G++ 
Sbjct: 674  VLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDV 733

Query: 330  LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
            L+LF+ M++ G  P  VTFV +L ACSH G+++EG  YF  M  ++GI P IEH+GCMVD
Sbjct: 734  LQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVD 793

Query: 390  LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            LLGRAG + +    I+ M    N  IW  LLGAC IHG+  +AE A  + L+L+P ++  
Sbjct: 794  LLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAV 853

Query: 450  YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
            YV LS++YA    W +  ++R+ M +  V K PG S +E+G+++  F   DRSHP++E+I
Sbjct: 854  YVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKI 913

Query: 510  HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
            +A L ++T  +K+EGYVP T +V  D++E EKE+A+ +HSE++AIA+ L++T PGTP+R+
Sbjct: 914  YAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRI 973

Query: 570  VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             KNLRVC DCH A K I+K+  REIV RD +RFHHFKDG CSC DYW
Sbjct: 974  FKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 179/330 (54%), Gaps = 4/330 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + ++  WNTMI G AE  N   A E+Y +M   G+ P+  TY  LL A      
Sbjct: 402 VFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTA 461

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G + HS  +++GF   + VQN+L+ MYA  G +KDA  +F  M  +D+++W ++I G
Sbjct: 462 LHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGG 521

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            A +G   EAL +F++M   G++P+  T  S+ +AC+   AL  GRR H  V + GL+ +
Sbjct: 522 LAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATD 581

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            +V N L++ YS CG +  A++VF  M +R+ V+++ ++ G A +  GKEAL+LF  ++ 
Sbjct: 582 AHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 641

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLV 397
            G  P +VT++ +L AC++ G ++         +KD Y  +        +V    + G  
Sbjct: 642 EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY--LSDTSLGNALVSTYAKCGSF 699

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             A      M M  N + W  ++G C  HG
Sbjct: 700 SDALLVFDKM-MKRNVISWNAIIGGCAQHG 728



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +W  +I GYA+  +  +A E++ KM   G+ P+  TY  +L A S 
Sbjct: 298 AREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSG 357

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A ++ G+  HS  +  G ES + V  +LV MYA  G  KD  +VFE +  RDL+AWN++
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 417

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A  G   EA  ++ +M  EG+ P+  T V L +AC    AL  GR  H+ V K G 
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +++V NAL+  Y++CG I  A+ +F +M +++ +SW+ ++ GLA +G G EAL +F++
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQD 537

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  VT+  +L ACS    +D G    +++  E G+         +V++    G
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCG 596

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
            VK A +    M    + V +  ++G    H  G  A+    R     L+P
Sbjct: 597 SVKDARQVFDRM-TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 646



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 199/397 (50%), Gaps = 17/397 (4%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAH 97
           ++++CI +  + A      ++VH   I+H   L+     +Y + A++++      +  A 
Sbjct: 147 MLKRCIEVKDLVAG-----REVHEHIIQHCTVLD-----QYTVNALINMYIQCGSIEEAR 196

Query: 98  NIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            +++ +   +  + +WN M+ GY +      A++L  +M   G+     T   LL +   
Sbjct: 197 QVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKS 256

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + +  G + H  A++      V V N +++MYA  G + +A +VF+ M  + +V+W  +
Sbjct: 257 PSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTII 316

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G    A  +F++M  EGV P+  T +++ +A +   AL  G+  H+++   G 
Sbjct: 317 IGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGH 376

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V  AL+  Y+KCG     ++VF ++  R+ ++W+T++ GLA  G  +EA E++ +
Sbjct: 377 ESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQ 436

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G +P ++T+V +L AC +   +  G     R+  + G M  I     ++ +  R G
Sbjct: 437 MQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCG 495

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +K A   + N ++  + + W  ++G     G  A A
Sbjct: 496 SIKDA-RLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 4/298 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+++   +   G + ++  Y  +LK   ++ D+  G + H   I++      +  N+L++
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 187 MYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
           MY   G +++A +V+  +  +ER + +WN+++ G+   G   EAL L REM   G+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T + L S+C    AL  GR  H    K  L  +VNV N +L+ Y+KCG I  A+ VF +
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M  ++ VSW+ ++ G A  G  + A E+F++M+  G VP  +T++ VL A S    +  G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            +    + +  G    +     +V +  + G  K   +  +  L+  + + W T++G 
Sbjct: 365 KTVHSHILNA-GHESDLAVGTALVKMYAKCGSYKDCRQVFEK-LVNRDLIAWNTMIGG 420



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNA 284
           + A+ + + +  +G   +    + +   C E+  L  GR  H ++ +   + D   V NA
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV-NA 181

Query: 285 LLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           L++ Y +CG I  A++V+ ++   +R   SW+ +VVG    G+ +EAL+L +EM+  G  
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 343 PGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            G  T + +L +C     ++ G   + + MK    ++  +    C++++  + G + +A 
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKAR--LLFDVNVANCILNMYAKCGSIHEAR 299

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           E    M    + V W  ++G     GHS IA
Sbjct: 300 EVFDKM-ETKSVVSWTIIIGGYADCGHSEIA 329


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/593 (41%), Positives = 359/593 (60%), Gaps = 35/593 (5%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +++Q+HA     G   ++  +G ++    +S    + YA+ I    + P +F  N+MIR 
Sbjct: 21  EVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRA 80

Query: 118 YAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           + +S  P  + + Y ++  SG  +KPD +T  FL++A + L     G Q H + IR GF+
Sbjct: 81  HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFD 140

Query: 176 SLVFVQNSLVHMYAAFGHVKDAC--------------------------------KVFEL 203
           +   VQ  L+ +YA  G + D+C                                K+FE 
Sbjct: 141 NDPHVQTGLISLYAELGCL-DSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M ERD +AWN++I+G+A  G+  EAL +F  M  EGV+ +G  M+S+ SAC +LGAL  G
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R AH+Y+ +  +   V +   L+D Y+KCG +  A  VF  M ++N  +WS+ + GLA+N
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           GFG++ LELF  M+  G  P  VTFV VL  CS  G VDEG  +F  M++E+GI P++EH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GC+VDL  RAG ++ A   IQ M M P+A +W +LL A  ++ +  +  +A   +L+LE
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
             + G YVLLSN+YA    W NV  VR++M  + V+K PG S++E+   V EFF+GD+SH
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P+  +I A+  +I+++L+L GY   T  V  DI+EEEKEDAL  HSEK AIAF +++   
Sbjct: 500 PKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKE 559

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             P+R+VKNLRVC DCH    +ISK+++REI+VRDR+RFHHFKDGHCSC  +W
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/644 (39%), Positives = 380/644 (59%), Gaps = 66/644 (10%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           +T  +  C++LL  C + +  L Q+H   I++GV  ++   GK +++  +S+S  + YA 
Sbjct: 1   MTIAIHHCLSLLNSCKNLR-ALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYAR 59

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKL 156
            +     +P+ F +NT++RGY+ES  P  +V ++ +M   G + PD+ ++ F++KA+   
Sbjct: 60  RLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENF 119

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             +R G Q H  A+++G ES +FV  +L+ MY   G V+ A KVF+ M + +LVAWN+VI
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179

Query: 217 N-------------------------------GFASNGKPNEALTLFREM---------- 235
                                           G+   G+   A  +F EM          
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239

Query: 236 ---------------------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
                                   G+ P+  ++  + SAC++ G+   G+  H +V K G
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELF 333
            S  V+VNNAL+D YS+CG +  A+ VF  M+ KR  VSW++++ GLA++G G+EA+ LF
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            EM   G  P  ++F+ +L+ACSH G+++EG  YF  MK  Y I P+IEH+GCMVDL GR
Sbjct: 360 NEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGR 419

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +G +++AY++I  M +PP A++WRTLLGAC+ HG+  +AE  +  L +L+P +SGD VLL
Sbjct: 420 SGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLL 479

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN YA   +W +V  +R++M+ +R+KKT   SLVE+G  +++F  G++      E H  L
Sbjct: 480 SNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKL 539

Query: 514 AEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
            EI  +LK E GY P   +   D+EEEEKED +S HSEK+A+AF L   + G  +R+VKN
Sbjct: 540 KEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKN 599

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH  +KL SKVY  EI+VRDR+RFH FKDG CSCRDYW
Sbjct: 600 LRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/599 (41%), Positives = 370/599 (61%), Gaps = 31/599 (5%)

Query: 36  NPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           +PI   ++KC  L        + LKQVHA  +  G+      L   L     S  F  +Y
Sbjct: 6   HPILQKLQKCHNL--------NTLKQVHAQMLTTGLSFQTYYLSHLLN---TSSKFASTY 54

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPL-LAVELYSKMHV-SGIKPDTHTYPFLLKAI 153
           A  IF+H+ +P +F +NT+I      ++ + LA  LY+ +     ++P++ T+P L KA 
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKAC 114

Query: 154 SKLADVRMGEQTHSVAIR---NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           +    ++ G   H+  ++     ++   FVQNSL++ YA +G +  +  +F+ +SE DL 
Sbjct: 115 ASHPWLQHGPPLHAHVLKFLQPPYDP--FVQNSLLNFYAKYGKLCVSRYLFDQISEPDLA 172

Query: 211 AWNSVINGFASNGK-------------PNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            WN+++  +A +                 EAL LF +M    ++P+  T+V+L SAC+ L
Sbjct: 173 TWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNL 232

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           GAL+ G  AH YV +  L  N  V  AL+D YSKCG +  A ++F E+  R+   ++ ++
Sbjct: 233 GALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMI 292

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G AV+G G +ALEL++ M++   VP   T V  ++ACSH G+V+EG   F+ MK  +G+
Sbjct: 293 GGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGM 352

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            PK+EH+GC++DLLGRAG +K+A E +Q+M M PNA++WR+LLGA  +HG+  + E A  
Sbjct: 353 EPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALK 412

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L++LEP+ SG+YVLLSN+YA   RW +V+ VR  M    V K PG SLVE+   + EF 
Sbjct: 413 HLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFL 472

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
            GD++HP ++EI++ + EI ++L   G+ PRT  V  D+EEE+KED LSYHSE++AIAF 
Sbjct: 473 TGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFA 532

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+ ++   P+R++KNLRVC DCH   KLIS  Y R+I+VRDR+RFHHFKDG CSC DYW
Sbjct: 533 LIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/521 (43%), Positives = 336/521 (64%), Gaps = 6/521 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  + + N+ +W TMI  Y+   N   A++    M   G++P+  TY  +L+A   
Sbjct: 109 AEDLFDEMPERNVVSWTTMISAYSNKLNDK-ALKCLILMFREGVRPNMFTYSSVLRACDG 167

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L ++R   Q H   I+ G ES VFV+++L+ +Y+ +  + +A  VF+ M  RDLV WNS+
Sbjct: 168 LPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSI 224

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA N   NEAL LF+ M   G   D  T+ S+  AC  L  L LGR+ H +V K   
Sbjct: 225 IGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--F 282

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +NNAL+D Y KCG +  A   F  M +++ +SWST+V GLA NG+ ++ALELF+ 
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +T +GVL+ACSH G+V++G+ YF+ MK  +G+ P  EH+GC++DLLGRAG
Sbjct: 343 MKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I  M   P++V WRTLLGAC +H +  +A  A   +++LEP+ +G Y+LLSN
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSN 462

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  QRW +V EVR+TM    ++KTPG S +E+  ++  F +GD SHP+ EEI   L +
Sbjct: 463 IYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLND 522

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + +++   GYVP T  V  D+E E+KED+L YHSEK+AI F L+N +    VR+ KNLR+
Sbjct: 523 LIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRI 582

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  K++S++  R IV+RD  R+HHF+DG CSC DYW
Sbjct: 583 CGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 160/340 (47%), Gaps = 42/340 (12%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+     M   G+  D  TY  L+K  S    V+ G++ H      G+E  +FV N+L++
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY  F  +++A  +F+ M ER++V+W ++I+ + SN   ++AL     M  EGV P+ +T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFT 157

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  AC  L  L   R+ H  + K GL  +V V +AL+D YSK   +  A  VF EM 
Sbjct: 158 YSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP 214

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS---------- 356
            R+ V W++++ G A N  G EAL LFK M+  GF+  + T   VL AC+          
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQ 274

Query: 357 -----------------------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
                                   CG +++  S F RM     +   +  +  MV  L +
Sbjct: 275 VHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRM-----VEKDVISWSTMVAGLAQ 329

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
            G  +QA E  ++M    +   + T+LG      H+ + E
Sbjct: 330 NGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVE 369



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           F      + A+     M   GV  D  T   L   C+  GA+  G+R H +++  G    
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V N LL+ Y K  ++  A+ +F EM +RN VSW+T++   + N    +AL+    M  
Sbjct: 90  MFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFR 148

Query: 339 GGFVPGEVTFVGVLYACS--------HCGMVDEGF 365
            G  P   T+  VL AC         HCG++  G 
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGL 183


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/574 (43%), Positives = 360/574 (62%), Gaps = 12/574 (2%)

Query: 54  SSKHKLKQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFP----MSYAHNIFSHVQDPNI 108
           +S   L Q+HA +++ G  L  +P     L+             ++YA  +F  +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 109 FTW-NTMIRGYAESANPLLAVE----LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
             W NT++RGYA         E    ++ +M   G+ PDT+T+  LLKA +       G 
Sbjct: 99  VVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGR 158

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H VA++ G     +V  +L++MYA  G V+ A  +F+ M    +V++N++I     + 
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P EAL LFREM ++G++P   T++S+ SACA LGAL LGR  H Y+ K+ L   V VN 
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNT 278

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+KCG +  A  VF++M  R+  +WS ++V  A +G+G+EA+ +F+EM+  G  P
Sbjct: 279 ALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKP 338

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            +VTF+GVLYACSH GMV EG  YF  M+ EYGI+  I+H+GC+ DLL R+G +++AY++
Sbjct: 339 DDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKF 397

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I  + + P A++WRTLL AC  HG   + +     +L+L+  H GDYV+ SNL A   RW
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRW 457

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             +  VR+ M ++ V K PG S +E+ N V EFF GD SHP ++E   M+ E+ ++LKL 
Sbjct: 458 EEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLV 517

Query: 524 GYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           GYVP T +VF  ++ EEEK  +L YHSEK+AI+F L+NTAPGT +R+VKNLRVC DCH  
Sbjct: 518 GYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSM 577

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KL+S V++R I++RD +RFHHF+DG CSC DYW
Sbjct: 578 AKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/558 (44%), Positives = 343/558 (61%), Gaps = 41/558 (7%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L Q+HA   RHG+  ++P L   L  +  SL   + Y+  +F   Q+P++F W  +I G+
Sbjct: 46  LLQIHAVLFRHGLD-HHPILNFKLQRSYASLG-RLDYSVALFGRTQNPSVFFWTAIIHGH 103

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A   + + A +L+  M      P+                                +SLV
Sbjct: 104 ALRGDVVSAQQLFDTM------PE--------------------------------KSLV 125

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            +  +++  YA  G +  A  +F+ M ERD V WN +I+G+  NG PNEAL LFR M   
Sbjct: 126 SL-TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 184

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
             +P+  T++S+ SAC +LGAL  GR  H+Y+   G+  NV+V  AL+D YSKCG +  A
Sbjct: 185 KAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 244

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF ++  ++ V+W++++VG A++GF +EAL+LFK M   G  P  +TF+G+L AC H 
Sbjct: 245 RLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHS 304

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G V EG+  F +MKDEYGI PKIEH+GCMV+LLGRAG V+QAYE ++NM + P+ V+W T
Sbjct: 305 GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGT 364

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGAC +HG  A+ E     L+     +SG Y+LLSN+YA    W  V  +R  M    V
Sbjct: 365 LLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 424

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KK PG S +E+ N+V EF  G  +HP+ +EI+ ML EI   LK  GY P+T+ V  DI E
Sbjct: 425 KKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGE 484

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            EKE +L  HSEK+AIAF L+NT PGT +++VKNLRVCADCH   KLISK+  R+IVVRD
Sbjct: 485 TEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRD 544

Query: 599 RSRFHHFKDGHCSCRDYW 616
           R+RFHHF +G CSC DYW
Sbjct: 545 RNRFHHFVNGSCSCGDYW 562


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/572 (42%), Positives = 356/572 (62%), Gaps = 5/572 (0%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +LL+ C S+K     KQ+HA   + G+  N  DL   L+    S+   +  AH++F  + 
Sbjct: 63  SLLESCISAKALEPGKQLHARLCQLGIAYN-LDLATKLV-NFYSVCNSLRNAHHLFDKIP 120

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+F WN +IR YA +     A+ LY +M   G+KPD  T PF+LKA S L+ +  G  
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   IR+G+E  VFV  +LV MYA  G V DA  VF+ + +RD V WNS++  +A NG 
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           P+E+L+L  EMA++GV P   T+V++ S+ A++  L  GR  H + W+ G   N  V  A
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTA 300

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG +  A  +F  +R++  VSW+ ++ G A++G   EAL+LF+ M +    P 
Sbjct: 301 LIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPD 359

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            +TFVG L ACS   ++DEG + +  M  +  I P +EH+ CMVDLLG  G + +AY+ I
Sbjct: 360 HITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLI 419

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + M + P++ +W  LL +C  HG+  +AE+A   L++LEP  SG+YV+L+N+YA   +W 
Sbjct: 420 RQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWE 479

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V  +R+ M+ + +KK    S +E+ N+V+ F  GD SHP +  I+A L  +   ++  G
Sbjct: 480 GVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAG 539

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T +VF D+EE+EK D +  HSE++AIAF L++T PGT + + KNLR+C DCH+AIK
Sbjct: 540 YVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIK 599

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISK+  REI VRD +R+HHF+ G CSC DYW
Sbjct: 600 FISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 150/313 (47%), Gaps = 14/313 (4%)

Query: 141 PDTHTY-PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           P  H Y   LL++      +  G+Q H+   + G    + +   LV+ Y+    +++A  
Sbjct: 55  PSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHH 114

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           +F+ + + +L  WN +I  +A NG    A++L+ +M   G++PD +T+  +  AC+ L  
Sbjct: 115 LFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALST 174

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           +  GR  H  V + G   +V V  AL+D Y+KCG ++ A+ VF ++  R+AV W++++  
Sbjct: 175 IGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAA 234

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL-----YACSHCGMVDEGFSYFKRMKDE 374
            A NG   E+L L  EM   G  P E T V V+      AC   G    GF +  R   +
Sbjct: 235 YAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGW--RHGFQ 292

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA-E 433
           Y    K      ++D+  + G VK A    +  L     V W  ++    +HG +  A +
Sbjct: 293 YNDKVKTA----LIDMYAKCGSVKVACVLFER-LREKRVVSWNAIITGYAMHGLAVEALD 347

Query: 434 IARSTLLQLEPKH 446
           +    + + +P H
Sbjct: 348 LFERMMKEAQPDH 360


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/600 (43%), Positives = 372/600 (62%), Gaps = 20/600 (3%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           S P +  N +   + +C  + Q        LKQ+HA S+R  +P ++  L  Y      S
Sbjct: 16  SKPTNHYNLLLQHLNECKDMSQ--------LKQIHALSLRSTLPNHSTTLFLYSRILHFS 67

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL---AVELYSKM-HVSGIKPDTH 144
               ++YA+ +F  V +PN F WN +IR  A+S +  L   A+ LY+ M   S   PD H
Sbjct: 68  SLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNH 127

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T+PF+LKA + L  +  G+Q H+  ++ GF+S V++ NSL+H YA+ G ++ A  VF+ M
Sbjct: 128 TFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKM 187

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
            +R LV+WN++I+ F   G+   AL LF +   +  EPDGYT+ S+ +ACA L AL+LG 
Sbjct: 188 PQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGM 247

Query: 265 RAHTYVWK-VGLS---DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            AH ++ +  G+S   D+V VNN+LLD Y KCG +  A ++F  M+K +  SW+++++G 
Sbjct: 248 WAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGF 307

Query: 321 AVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           A++G G+ ALE F+ M  I  FVP  +TFVGVL AC+H  MV+EG  YF  M +EY I P
Sbjct: 308 AMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEP 367

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA-IAE-IARS 437
           ++EH+GC+VD+L RAGL+ +A E + +M M P+ VIWR+LL +C     S  ++E IAR 
Sbjct: 368 QLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQ 427

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L   E   SG YVLLS +YA   RW +V  VR+ M    + K PG SL+E+     EFF
Sbjct: 428 ILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFF 487

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPR-TENVFADIEEEEKEDALSYHSEKIAIAF 556
            GD SHPQT+EI+ +L  + +++   GY P  ++    D     K D+L  HSE++AIA 
Sbjct: 488 AGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIAL 547

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L+N  PG P+R+ KNLRVC DCH    LIS++++ EI+VRDR RFHHFKDG CSC DYW
Sbjct: 548 GLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/594 (40%), Positives = 364/594 (61%), Gaps = 35/594 (5%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNTMIR 116
           + K+ H   I +G+    P L   + ++ +  S  + YA  +      P  +F +NT IR
Sbjct: 3   QFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIR 62

Query: 117 GYAESANP---LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           G++ +  P   L +V L+ +M V  + P+  T+ FL +  S      +G Q H + I+N 
Sbjct: 63  GFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNS 122

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING--------------- 218
           FE  VFV+NS++  Y+  G + DA  VF+  SE D+V+WNS+I+G               
Sbjct: 123 FEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFS 182

Query: 219 ----------------FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                           +A NG+P EAL LFREM     EP+   +VS+ SAC++LGAL  
Sbjct: 183 KMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDH 242

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G   H Y+ K  +  +  ++ AL+D Y+KCG I  A + F   RKR+  +++  + GLA+
Sbjct: 243 GCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAM 302

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NG  +EAL+LF++M+  G  P  V+++ VL ACSH G V++GF YF  M D +GI P+++
Sbjct: 303 NGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELD 362

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+ CMVDLLGRAGL+++A +++ +M + P+ VIW  LLGAC ++G++ + +   S L++ 
Sbjct: 363 HYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVES 422

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +  H G Y+LLSN+YA   +  + ++VR+TM + +V + PG SL+E+   V EFF GDRS
Sbjct: 423 DQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRS 482

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           H +TEEI+ M  EI K++K  GY   T  V  D+EEEEKE  + +HSEK+A+AF  + T 
Sbjct: 483 HEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTK 542

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            G+ +R+VKN+R+C+DCH AIKL+SKV+ R+I +RDR  FHHF++G CSC+DYW
Sbjct: 543 SGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 367/591 (62%), Gaps = 3/591 (0%)

Query: 28  HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
           H+   ++ + I +V  +   LL    +S  +L Q+ A++I+  +  +   + K + +   
Sbjct: 14  HAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTE 72

Query: 88  S-LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           S     MSYA ++F  + +P+I  +N+M RGY+   NPL    L+ ++   GI PD +T+
Sbjct: 73  SPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTF 132

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           P LLKA +    +  G Q H ++++ G +  V+V  +L++MY     V  A  VF+ + E
Sbjct: 133 PSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE 192

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
             +V +N++I G+A   +PNEAL+LFREM  + ++P+  T++S+ S+CA LG+L LG+  
Sbjct: 193 PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWI 252

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y  K      V VN AL+D ++KCG +  A  +F +MR ++  +WS ++V  A +G  
Sbjct: 253 HKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKA 312

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           ++++ +F+ M      P E+TF+G+L ACSH G V+EG  YF +M  ++GI+P I+H+G 
Sbjct: 313 EKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGS 372

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           MVDLL RAG ++ AYE+I  + + P  ++WR LL AC+ H +  +AE     + +L+  H
Sbjct: 373 MVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH 432

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            GDYV+LSNLYA  ++W  V  +R+ M   +  K PG S +E+ N V EFF GD     T
Sbjct: 433 GGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSAT 492

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            ++H  L E+ K+LKL GYVP T  V  A++ ++EKE  L YHSEK+AI F L+NT PGT
Sbjct: 493 TKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGT 552

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +RVVKNLRVC DCH A KLIS ++ R++V+RD  RFHHF+DG CSC D+W
Sbjct: 553 TIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/574 (43%), Positives = 360/574 (62%), Gaps = 12/574 (2%)

Query: 54  SSKHKLKQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFP----MSYAHNIFSHVQDPNI 108
           +S   L Q+HA +++ G  L  +P     L+             ++YA  +F  +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 109 FTW-NTMIRGYAESANPLLAVE----LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
             W NT++RGYA         E    ++ +M   G+ PDT+T+  LLKA +       G 
Sbjct: 99  VIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGR 158

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H VA++ G     +V  +L++MYA  G V+ A  +F+ M    +V++N++I     + 
Sbjct: 159 QAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSS 218

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P EAL LFREM ++G++P   T++S+ SACA LGAL LGR  H Y+ K+ L   V VN 
Sbjct: 219 LPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNT 278

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+KCG +  A  VF++M  R+  +WS ++V  A +G+G+EA+ +F+EM+  G  P
Sbjct: 279 ALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKP 338

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            +VTF+GVLYACSH GMV EG  YF  M+ EYGI+  I+H+GC+ DLL R+G +++AY++
Sbjct: 339 DDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKF 397

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I  + + P A++WRTLL AC  HG   + +     +L+L+  H GDYV+ SNL A   RW
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRW 457

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             +  VR+ M ++ V K PG S +E+ N V EFF GD SHP ++E   M+ E+ ++LKL 
Sbjct: 458 EEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLV 517

Query: 524 GYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           GYVP T +VF  ++ EEEK  +L YHSEK+AI+F L+NTAPGT +R+VKNLRVC DCH  
Sbjct: 518 GYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSM 577

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KL+S V++R I++RD +RFHHF+DG CSC DYW
Sbjct: 578 AKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 352/561 (62%), Gaps = 5/561 (0%)

Query: 61  QVHAFSIRHGVPLNNP-DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           Q+HA  ++   P     +L     +A +S +  ++YAH I + +   N F  NTMIR Y+
Sbjct: 11  QLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYS 70

Query: 120 ESANPLLAVELYSKM--HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++ +P  A+ L+  M    +  +PD  TYPFLLK+ ++L   R+G+Q H +  ++G ES 
Sbjct: 71  QTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESD 130

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            +V N L+HMY++ G    A KVF  M +RD+V+W S+I+GF  + +  EA+ LF EM  
Sbjct: 131 RYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVE 190

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           +GVEP+  T+VS+  ACA+ GA+ +GRR    + +  +    NV  AL+D Y+KCG I +
Sbjct: 191 DGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGS 250

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A++VF  +  ++  +W+ ++ GLA +G  +EA+ LF +ME  G  P E T   VL AC +
Sbjct: 251 ARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRN 310

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G   EGF+YF  M  +YGI P I+H+GCMVDLL R G + +A E+I+ M + P+ V+WR
Sbjct: 311 AGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWR 370

Query: 418 TLLGACTIHGHSAIAE--IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           TL+ A  +HG    +E  +    LL+++    G YVLL N+YA   +W +  ++R  M +
Sbjct: 371 TLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQ 430

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + + K PG S +E+   V EF  GD  H + E+I+A L E+ ++LK EGY P+   V  +
Sbjct: 431 KGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLE 490

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           I+ +EK   L +HSEK+A+AF L+ T+PGT +R+VKNLR C DCH  +KLISK+Y ++I+
Sbjct: 491 IDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDII 550

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRDR RFHHF +G CSC+DYW
Sbjct: 551 VRDRIRFHHFINGDCSCKDYW 571


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/595 (41%), Positives = 367/595 (61%), Gaps = 27/595 (4%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNI 99
           R  I+LLQ C  + +++  ++A  IR     N+     ++++ ++ +   ++   YA  I
Sbjct: 33  RHFISLLQNCKHN-NQIPPIYAKIIR-----NHHHQDPFVVFELLRVCSNLNSIGYASKI 86

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           FSH Q+PN++ +  +I G   S      + LY +M  S + PD++    +LKA      +
Sbjct: 87  FSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLAL 146

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA-------- 211
           + G + HS  ++ G  S   ++  L+ +Y   G  +DA +VF+ M ERD+VA        
Sbjct: 147 KEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYY 206

Query: 212 ----------WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
                     W ++I+G   NG+ N AL +FR M  E V P+  T+V + SAC+ELGAL 
Sbjct: 207 FDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQ 266

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           LGR   +Y+ K  +  N  V  AL++ YS+CG I  AQRVF +M+++N ++++++++G A
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFA 326

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
           ++G   EA+ELF+ +   GF P  VTFVGVL ACSH G+ + GF  F  M  +YGI P+I
Sbjct: 327 LHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQI 386

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+GCMVDLLGR G +++AY +I+ M + P+ V+   LL AC IHG+  +AE    +L+ 
Sbjct: 387 EHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVA 446

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
            +   SG Y+LLSN Y+   +W    EVR  M +E ++K PG S +E+ N + EF +GD 
Sbjct: 447 CKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDL 506

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
            HPQ E+I+  L E+ + L+LEGY P TE V  DIE+ EKE AL+ HSE++AI + L++T
Sbjct: 507 RHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLIST 566

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            P T +RVVKNLRVC DCHL IKLIS +  R+IVVRDR+RFHHF++G CSC DYW
Sbjct: 567 KPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/576 (42%), Positives = 353/576 (61%), Gaps = 9/576 (1%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDP 106
           L V ++ K  L+Q+HA  +R  +  N+     +L    +SL  P  ++Y+  +FS   +P
Sbjct: 17  LIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSL-IPRDINYSCRVFSQRLNP 75

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            +   NTMIR ++ S  P     L+  +   S +  +  +  F LK   K  D+  G Q 
Sbjct: 76  TLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQI 135

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H     +GF S   +  +L+ +Y+   +  DACKVF+ + +RD V+WN + + +  N + 
Sbjct: 136 HGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRT 195

Query: 226 NEALTLFREMASE---GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
            + L LF +M ++    V+PDG T +    ACA LGAL  G++ H ++ + GLS  +N++
Sbjct: 196 RDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLS 255

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+  YS+CG +  A +VF  MR+RN VSW+ L+ GLA+NGFGKEA+E F EM   G  
Sbjct: 256 NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGIS 315

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           P E T  G+L ACSH G+V EG  +F RM+  E+ I P + H+GC+VDLLGRA L+ +AY
Sbjct: 316 PEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAY 375

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
             I++M M P++ IWRTLLGAC +HG   + E   S L++L+ + +GDYVLL N Y+   
Sbjct: 376 SLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVG 435

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           +W  V E+R  M ++R+   PG S +EL   V EF + D SHP+ EEI+ MLAEI ++LK
Sbjct: 436 KWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLK 495

Query: 522 LEGYVPRTENVFADIE-EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           + GYV    +   ++E EEEK  AL YHSEK+AIAF ++ T PGT +RV KNLR C DCH
Sbjct: 496 IAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCH 555

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              K +S VY R ++VRDRSRFHHFK G CSC D+W
Sbjct: 556 NFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/572 (42%), Positives = 354/572 (61%), Gaps = 4/572 (0%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L+ C+  K   + +QVHA  ++ G   N  +  +  +  + +    +  A ++F  + 
Sbjct: 126 SVLKACSRMKALREGEQVHALILKSGFKSN--EFVENTLIQMYANCGQIGVARHVFDGMP 183

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + +I  WN+M+ GY ++      V+L+ K+    I+ D  T   +L A  +LA++ +GE 
Sbjct: 184 ERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGEL 243

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
                +  G      +  SL+ MYA  G V  A K+F+ M +RD+VAW+++I+G+A   +
Sbjct: 244 IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADR 303

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL LF EM    V P+  TMVS+  +CA LGA   G+  H Y+ K  +   V +   
Sbjct: 304 CKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ 363

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+DFY+KCG I  +  VF+EM  +N  +W+ L+ GLA NG GK ALE F  M      P 
Sbjct: 364 LIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPN 423

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           +VTF+GVL ACSH  +VD+G   F  M+ ++ I P+IEH+GCMVD+LGRAG +++AY++I
Sbjct: 424 DVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFI 483

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
            NM  PPNAV+WRTLL +C  H +  +AE +   + +LEP HSGDY+LLSN YA   R  
Sbjct: 484 DNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVE 543

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +   VR  + ++ +KK PG SL+EL   V EFF  D  H  ++EIH  L ++ K++K  G
Sbjct: 544 DAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLG 603

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T++   + EEE KE ++S+HSEK+AIA+ L+ T+P T +R+ KNLR+C DCH A K
Sbjct: 604 YVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATK 663

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            IS+V+ R I+VRDR+RFHHFKDG CSC DYW
Sbjct: 664 FISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 222/414 (53%), Gaps = 16/414 (3%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           ENP + ++++C T           L+QVHA  ++    L+       L  A + L   + 
Sbjct: 21  ENPKSLILQQCKT--------PKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTID 72

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YA +IF+H+  P    +N MIRG A   +P  A+ L+ KMH   ++ D  T+  +LKA S
Sbjct: 73  YALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACS 132

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           ++  +R GEQ H++ +++GF+S  FV+N+L+ MYA  G +  A  VF+ M ER +VAWNS
Sbjct: 133 RMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNS 192

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++G+  NG  +E + LFR++    +E D  TM+S+  AC  L  L +G     Y+   G
Sbjct: 193 MLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKG 252

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L  N  +  +L+D Y+KCG +  A+++F EM KR+ V+WS ++ G A     KEAL LF 
Sbjct: 253 LRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFH 312

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           EM+ G   P EVT V VLY+C+  G  + G     Y K+ K +  +    +    ++D  
Sbjct: 313 EMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ----LIDFY 368

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            + G + ++ E  + M    N   W  L+     +G   +A    S++L+ + K
Sbjct: 369 AKCGYIDRSVEVFKEMSF-KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 357/572 (62%), Gaps = 4/572 (0%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           CI LL  C +  H ++QVHA  + +G  L +  +   L+Y        +  A+++F  + 
Sbjct: 6   CIDLLLRCRNVFH-IRQVHAHVVANGT-LQDLVIANKLLYTYAQHK-AIDDAYSLFDGLT 62

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             +  TW+ M+ G+A++ +       + ++   G+ PD +T PF+++      D+++G  
Sbjct: 63  MRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRV 122

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H V +++G  S  FV  SLV MYA    V+DA ++FE M  +DLV W  +I  +A +  
Sbjct: 123 IHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCN 181

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             E+L LF  M  EGV PD   MV++ +ACA+LGA+   R A+ Y+ + G S +V +  A
Sbjct: 182 AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTA 241

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           ++D Y+KCG + +A+ VF  M+++N +SWS ++     +G GK+A++LF  M     +P 
Sbjct: 242 MIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPN 301

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            VTFV +LYACSH G+++EG  +F  M +E+ + P ++H+ CMVDLLGRAG + +A   I
Sbjct: 302 RVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLI 361

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + M +  +  +W  LLGAC IH    +AE A ++LL+L+P++ G YVLLSN+YA   +W 
Sbjct: 362 EAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWE 421

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V + R  M + ++KK PG + +E+ N+ ++F +GDRSHPQ++EI+ ML  + KKL++ G
Sbjct: 422 KVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAG 481

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T+ V  D+EEE K++ L  HSEK+AIAF L+    G P+R+ KNLRVC DCH   K
Sbjct: 482 YVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSK 541

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++S +  R I+VRD +RFHHF DG CSC DYW
Sbjct: 542 MVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/523 (43%), Positives = 339/523 (64%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+     A+EL+ +M    ++PD  TY  +L A + 
Sbjct: 149 AQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAH 208

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF+S + + N+L+ +Y+  G V+ AC +F+ +S +D+++WN++
Sbjct: 209 SGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTL 268

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 269 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 328

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AA +VF  M  ++  SW+ ++ G A++G    + +LF
Sbjct: 329 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M  +Y + PK+EH+GCM+DLLG 
Sbjct: 389 SRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 448

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I  M M P+ VIW +LL AC +HG+  +AE     L+++EP++   Y+LL
Sbjct: 449 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILL 508

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW +V  +R  +  + +KK PG S +E+ + VFEF +GD+ HPQ  EI+ ML
Sbjct: 509 SNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGML 568

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 569 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 628

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KL+SK+Y REIV RDR+RFHHF+DG CSC DYW
Sbjct: 629 RVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 206/389 (52%), Gaps = 41/389 (10%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA ++F  +Q+PN   WNTMIRG+A S++P+ ++ LY  M   G+ P+++T+PFLLK+
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA- 211
            +K      G+Q H   ++ GF+  ++V  SL+ MY     ++DA KVF+  S RD+V+ 
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 212 ------------------------------WNSVINGFASNGKPNEALTLFREMASEGVE 241
                                         WN++I+G+A  G   EAL LF EM    V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  T V++ SACA  G++ LGR+ H++V   G   N+ + NAL+D YSKCG +  A  +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F+ +  ++ +SW+TL+ G       KEAL LF+EM   G  P +VT + VL AC+H G +
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 362 DEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           D G        KR+K   G+         ++D+  + G ++ A++   +ML    +  W 
Sbjct: 314 DIGRWIHVYIDKRLK---GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WN 369

Query: 418 TLLGACTIHGH--SAIAEIARSTLLQLEP 444
            ++    +HG   ++    +R   + +EP
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEP 398


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/606 (40%), Positives = 374/606 (61%), Gaps = 38/606 (6%)

Query: 42  VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           V +  +L+    S  H L Q+HA  +R G+  +NP L   L  +  +L   +  +  +F+
Sbjct: 47  VERFASLIDKSKSVAHLL-QIHASLLRRGL-YHNPILNFKLQRSYAALG-RLDCSVFVFN 103

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
              +PN+F+++ +I  + +S     A   YS+M   G++P+  T+  +LK+ S    +  
Sbjct: 104 TFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LES 159

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYA-------------------------------A 190
           G+  H  AI+ G  S ++V+  LV +YA                                
Sbjct: 160 GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSK 219

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G +  A  +FE M ERD+V WN +I G+A +G PNE+L LFR M      P+  T++++
Sbjct: 220 MGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAV 279

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SAC +LGAL  GR  H+Y+   G+  NV+V  AL+D YSKCG +  A+ VF  +R ++ 
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           V+W++++VG A++GF + AL+LF+EM   G  P ++TF+G+L AC H G+V+EG S+F+ 
Sbjct: 340 VAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRL 399

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M+D+YGI PKIEH+GCMV+LLGRAG +++AY  ++NM +  + V+W TLLG C +H +  
Sbjct: 400 MRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIK 459

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           + E     L+  +  +SG YVLLSN+YA    W  V ++R  M +  ++K  G S +E+ 
Sbjct: 460 LGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVD 519

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
           N+V EF  G+R HP+++EI+ ML EI   LK  GY P+T+ V  D+ EE+KE +L  HSE
Sbjct: 520 NKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSE 579

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L++T PGT V++VKNLRVC+DCH  +K+IS++  R+IV+RDR+RFHHF+DG C
Sbjct: 580 KLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLC 639

Query: 611 SCRDYW 616
           SC DYW
Sbjct: 640 SCGDYW 645


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/584 (41%), Positives = 363/584 (62%), Gaps = 11/584 (1%)

Query: 36  NPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFP 92
           N IT V+     LL  C +S   H  K++H+   + G      D+G +  + ++ S    
Sbjct: 327 NKITYVI-----LLNACVNSAALHWGKEIHSRVAKAGF---TSDIGVQNALISMYSRCGS 378

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +   ++ +W  MI G A+S     A+ +Y +M  +G++P+  TY  +L A
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S  A +  G + H   +  G  +   V N+LV+MY+  G VKDA +VF+ M +RD+VA+
Sbjct: 439 CSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAY 498

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+A++    EAL LF  +  EG++PD  T +++ +ACA  G+L   R  HT V K
Sbjct: 499 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRK 558

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   + +V NAL+  Y+KCG    A  VF +M KRN +SW+ ++ G A +G G++AL+L
Sbjct: 559 GGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQL 618

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M++ G  P  VTFV +L ACSH G+++EG  YF  M  ++ I+P IEH+GCMVDLLG
Sbjct: 619 FERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLG 678

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A   I+ M    N  IW  LLGAC IHG+  +AE A  + L+L+  ++  YV 
Sbjct: 679 RAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVA 738

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LS++YA    W +  ++R+ M +  V K PG S +++G+++  F   DRSHPQ+E+I+A 
Sbjct: 739 LSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAE 798

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L  +T  +K++GYVP T +V  D++E EKE+A+ +HSE++AIA+ L++T PGT + + KN
Sbjct: 799 LDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKN 858

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH A K ISK+  REI+ RD +RFHHFKDG CSC DYW
Sbjct: 859 LRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 177/331 (53%), Gaps = 2/331 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +W   I GYA+      A E++ KM   G+ P+  TY  +L A S 
Sbjct: 180 AREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSS 239

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A ++ G+  HS  +  G ES   V  +LV MYA  G  KD  +VFE +  RDL+AWN++
Sbjct: 240 PAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 299

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A  G   EA  ++ +M  EGV P+  T V L +AC    AL  G+  H+ V K G 
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGF 359

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + ++ V NAL+  YS+CG I  A+ VF +M +++ +SW+ ++ GLA +GFG EAL +++E
Sbjct: 360 TSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQE 419

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  VT+  +L ACS    ++ G    +++  E G+         +V++    G
Sbjct: 420 MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCG 478

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            VK A +    M+   + V +  ++G    H
Sbjct: 479 SVKDARQVFDRMIQ-RDIVAYNAMIGGYAAH 508



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 2/330 (0%)

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F  + + ++  WNTMI G AE      A E+Y++M   G+ P+  TY  LL A    A
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  G++ HS   + GF S + VQN+L+ MY+  G +KDA  VF+ M  +D+++W ++I 
Sbjct: 343 ALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIG 402

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G A +G   EALT+++EM   GVEP+  T  S+ +AC+   AL  GRR H  V + GL+ 
Sbjct: 403 GLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLAT 462

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           + +V N L++ YS CG +  A++VF  M +R+ V+++ ++ G A +  GKEAL+LF  ++
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 522

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P +VT++ +L AC++ G + E       +  + G          +V    + G  
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSL-EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSF 581

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             A    + M    N + W  ++G    HG
Sbjct: 582 SDASIVFEKM-TKRNVISWNAIIGGSAQHG 610



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 199/397 (50%), Gaps = 17/397 (4%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAH 97
           ++++CI +  + A      +QVH   I+H      PD  +Y + A++++      +  A 
Sbjct: 29  MLKRCIEVKDLVAG-----RQVHQHIIQHRTV---PD--QYTVNALINMYIQCGSIEEAR 78

Query: 98  NIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            ++  +   +  + +WN M+ GY +      A++L  +M   G+ PD  T    L +   
Sbjct: 79  QVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKS 138

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G + H  A++ G    V V N +++MYA  G +++A +VF+ M ++ +V+W   
Sbjct: 139 PGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTIT 198

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G+   A  +F++M  EGV P+  T +S+ +A +   AL  G+  H+ +   G 
Sbjct: 199 IGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGH 258

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +  V  AL+  Y+KCG     ++VF ++  R+ ++W+T++ GLA  G+ +EA E++ +
Sbjct: 259 ESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQ 318

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G +P ++T+V +L AC +   +  G     R+  + G    I     ++ +  R G
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA-KAGFTSDIGVQNALISMYSRCG 377

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +K A   + + ++  + + W  ++G     G  A A
Sbjct: 378 SIKDA-RLVFDKMVRKDVISWTAMIGGLAKSGFGAEA 413



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 4/304 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AV++   +   G + ++  Y  +LK   ++ D+  G Q H   I++      +  N+L++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 187 MYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
           MY   G +++A +V++ +S  ER + +WN+++ G+   G   +AL L R+M   G+ PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T++S  S+C   GAL  GR  H    + GL  +V V N +L+ Y+KCG I  A+ VF +
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M K++ VSW+  + G A  G  + A E+F++ME  G VP  +T++ VL A S    +  G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            +   R+ +  G          +V +  + G  K   +  +  L+  + + W T++G   
Sbjct: 247 KAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDCRQVFEK-LVNRDLIAWNTMIGGLA 304

Query: 425 IHGH 428
             G+
Sbjct: 305 EGGY 308


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/526 (43%), Positives = 341/526 (64%), Gaps = 2/526 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   ++ +WN MI GYAE+ N   A+EL+ +M  + ++PD  T   ++ A
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++ A + +G Q HS    +GF S + + N+L+ +Y   G V+ AC +FE +S +D+++W
Sbjct: 245 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 304

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 364

Query: 273 --VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G+++  +   +L+D Y+KCG I AAQ+VF  +  R+  SW+ ++ G A++G    A 
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 424

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++F  M      P ++TFVG+L ACSH GM+D G   F+ MK++Y I PK+EH+GCM+DL
Sbjct: 425 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 484

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LG +GL K+A E I  M M P+ VIW +LL AC ++ +  + E     L+++EPK+ G Y
Sbjct: 485 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSY 544

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   RW  V ++R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+
Sbjct: 545 VLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +V
Sbjct: 605 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 235/449 (52%), Gaps = 50/449 (11%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP- 92
           + +P  S++  C TL          L+ +HA  I+ G+   N  L K + + ++S  F  
Sbjct: 1   RNHPSLSLLHNCKTL--------QSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDG 52

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA ++F  +Q+PN+  WNTM RG+A S++P+ A+ LY  M   G+ P+ +T+PFLLK+
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA- 211
            +K    R G+Q H   ++ G++  ++V  SL+ MY   G ++DA KVF+  S RD+V+ 
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 172

Query: 212 ------------------------------WNSVINGFASNGKPNEALTLFREMASEGVE 241
                                         WN++I+G+A  G   EAL LF+EM    V 
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  TMVS+ SACA+  ++ LGR+ H+++   G   N+ + NAL+D Y KCG +  A  +
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  +  ++ +SW+TL+ G       KEAL LF+EM   G  P +VT + +L AC+H G +
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 352

Query: 362 DEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           + G        KR+K   G+     H   ++D+  + G ++ A +   ++L   +   W 
Sbjct: 353 EIGRWIHVYINKRLK---GVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL-NRSLSSWN 408

Query: 418 TLLGACTIHG--HSAIAEIARSTLLQLEP 444
            ++    +HG  ++A    +R    ++EP
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNEIEP 437


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/563 (40%), Positives = 344/563 (61%), Gaps = 12/563 (2%)

Query: 60  KQVHAFSIRHG------VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           K +HA+ +R+G      VPL    +  Y+          ++YA  +F  +   +I +W  
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCE------NLAYARRVFDGLSKASIISWTA 298

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MI  Y    N    V L+ KM   G+ P+  T   L+K       + +G+  H+  +RNG
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNG 358

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F   + +  + + MY   G V+ A  VF+    +DL+ W+++I+ +A N   +EA  +F 
Sbjct: 359 FTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFV 418

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M   G+ P+  TMVSL   CA+ G+L +G+  H+Y+ K G+  ++ +  + +D Y+ CG
Sbjct: 419 HMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCG 478

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I  A R+F E   R+   W+ ++ G A++G G+ ALELF+EME  G  P ++TF+G L+
Sbjct: 479 DIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALH 538

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G++ EG   F +M  E+G  PK+EH+GCMVDLLGRAGL+ +A+E I++M M PN 
Sbjct: 539 ACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNI 598

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            ++ + L AC +H +  + E A    L LEP  SG  VL+SN+YA   RW +V  +RR M
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAM 658

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
             E + K PG S +E+   + EF MGDR HP  ++++ M+ E+ +KL+  GY P    V 
Sbjct: 659 KDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVL 718

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            +I++E+K  AL+YHSEK+A+A+ L++TAPG P+R+VKNLRVC DCH A KL+SK+Y RE
Sbjct: 719 HNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGRE 778

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRDR+RFHHFK+G CSC DYW
Sbjct: 779 IIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 205/420 (48%), Gaps = 20/420 (4%)

Query: 60  KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           ++VH F +++G    V + N  +   ++Y+ V     ++ A  +F  +++ ++ +W+TMI
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALI---MMYSEVG---SLALARLLFDKIENKDVVSWSTMI 197

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG-- 173
           R Y  S     A++L   MHV  +KP       +   +++LAD+++G+  H+  +RNG  
Sbjct: 198 RSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKC 257

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
            +S V +  +L+ MY    ++  A +VF+ +S+  +++W ++I  +      NE + LF 
Sbjct: 258 GKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFV 317

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           +M  EG+ P+  TM+SL   C   GAL LG+  H +  + G + ++ +  A +D Y KCG
Sbjct: 318 KMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCG 377

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            + +A+ VF   + ++ + WS ++   A N    EA ++F  M   G  P E T V +L 
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
            C+  G ++ G  +     D+ GI   +      VD+    G +  A+          + 
Sbjct: 438 ICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEA-TDRDI 495

Query: 414 VIWRTLLGACTIHGH--SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
            +W  ++    +HGH  +A+        L + P    D   +  L+A     L +QE +R
Sbjct: 496 SMWNAMISGFAMHGHGEAALELFEEMEALGVTPN---DITFIGALHACSHSGL-LQEGKR 551



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 3/289 (1%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +I  Y ++  P  A ++Y+ M  +  + D    P +LKA   +    +G++ H   ++NG
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F   VFV N+L+ MY+  G +  A  +F+ +  +D+V+W+++I  +  +G  +EAL L R
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSK 291
           +M    V+P    M+S+    AEL  L LG+  H YV + G      V +  AL+D Y K
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           C  +  A+RVF  + K + +SW+ ++          E + LF +M   G  P E+T + +
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSL 334

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
           +  C   G ++ G           G    +      +D+ G+ G V+ A
Sbjct: 335 VKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/524 (44%), Positives = 338/524 (64%), Gaps = 3/524 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +WN MI GY E+     A+EL+ +M  + ++PD  T   +L A ++
Sbjct: 168 ARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQ 227

Query: 156 LADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              + +G + H+ V   +GF S + + N+ + +Y+  G V+ A  +FE +S +D+V+WN+
Sbjct: 228 SGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNT 287

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-- 272
           +I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K  
Sbjct: 288 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 347

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+++   +  +L+D Y+KCG I AA +VF  M  ++  SW+ ++ G A++G    A +L
Sbjct: 348 KGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDL 407

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F  M   G  P ++T VG+L ACSH G++D G   FK +  +Y I PK+EH+GCM+DLLG
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLG 467

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
            AGL K+A E I  M M P+ VIW +LL AC +HG+  +AE     L+++EP++SG YVL
Sbjct: 468 HAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVL 527

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA   RW +V  +R  +  + +KK PG S +E+ + V EF +GD+ HPQ+ EI+ M
Sbjct: 528 LSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRM 587

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + VVKN
Sbjct: 588 LEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKN 647

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC +CH A KLISK+Y REIV RDR+RFHHF+DG CSC DYW
Sbjct: 648 LRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 210/408 (51%), Gaps = 41/408 (10%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
            HA  ++ G+   N  L K L   +VS  F  + YA ++F   Q+PN+  WNTM+RG A 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S++ +  +E+Y +M   G  P+ +T+PFLLK+ +K      G Q H+  ++ G E   + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 181 QNSLVHMYAAFGHVKDA--------------C-----------------KVFELMSERDL 209
             SL+ MYA  G ++DA              C                 KVF+ ++ERD+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN++I G+  N    EAL LF+EM    V PD  T+VS+ SACA+ G++ LGR  HT 
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 270 VWK-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           V    G   ++ + NA +  YSKCG +  A  +F  +  ++ VSW+TL+ G       KE
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----FSYFKRMKDEYGIMPKIEHF 384
           AL LF+EM   G  P +VT + VL AC+H G +D G        KR+K   G+       
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK---GVTNGSALR 357

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             ++D+  + G ++ A++ + N +M  +   W  ++    +HG +  A
Sbjct: 358 TSLIDMYAKCGDIEAAHQ-VFNSMMHKSLSSWNAMIFGFAMHGRANAA 404


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 356/573 (62%), Gaps = 4/573 (0%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L VC   S    LK++H +S RHG+  N  +L      A  +    +  +  +F  +
Sbjct: 311 LNVLPVCLERSELQSLKELHGYSWRHGLQSN--ELVANAFIAAYTRCGALCSSERVFDLM 368

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
               + +WN ++ GYA++++P  A++LY +M  SG+ PD  T   LL A S++  +  GE
Sbjct: 369 DTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H  A+RNG     F+  SL+ +Y   G    A  +F+ M  R LV+WN +I G++ NG
Sbjct: 429 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 488

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P+EA+ LFR+M S+G++P    ++ +  AC++L AL LG+  H +  K  L++++ V++
Sbjct: 489 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSS 548

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +++D Y+K G I  +QR+F  +R+++  SW+ ++ G  ++G GKEALELF++M   G  P
Sbjct: 549 SIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKP 608

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            + TF G+L ACSH G+V++G  YF +M + + I PK+EH+ C+VD+LGRAG +  A   
Sbjct: 609 DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRL 668

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I+ M   P++ IW +LL +C IHG+  + E   + LL+LEP+   +YVL+SNL+A   +W
Sbjct: 669 IEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKW 728

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +V+ VR  M    ++K  G S +E+G +V  F +GD   P+ EE+      +  K+   
Sbjct: 729 DDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSI 788

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY P T +V  D+EEE+K   L  HSEK+AI+F L+NTA G PVRV KNLR+C DCH A 
Sbjct: 789 GYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAA 848

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K ISKV +R+IVVRD  RFHHF+DG CSC DYW
Sbjct: 849 KFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 198/421 (47%), Gaps = 20/421 (4%)

Query: 35  ENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           E      V   +T+L VCA  +   K   VH  +++ G  LN   +    +  + S    
Sbjct: 197 EESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLG--LNEELMVNNSLIDMYSKCRF 254

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGIKPDTHTYPFLL 150
           +S A  +F      NI +WN+MI GYA   +      L  KM    + +K D  T   +L
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
               + ++++  ++ H  + R+G +S   V N+ +  Y   G +  + +VF+LM  + + 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +WN+++ G+A N  P +AL L+ +M   G++PD +T+ SL  AC+ + +L  G   H + 
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            + GL+ +  +  +LL  Y  CG   AAQ +F  M  R+ VSW+ ++ G + NG   EA+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 494

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-----FSYFKRMKDEYGIMPKIEHFG 385
            LF++M   G  P E+  + V  ACS    +  G     F+    + ++  +   I    
Sbjct: 495 NLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSI---- 550

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLE 443
             +D+  + G +  + + I + L   +   W  ++    IHG    A+    +   L L+
Sbjct: 551 --IDMYAKGGCIGLS-QRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 607

Query: 444 P 444
           P
Sbjct: 608 P 608



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 150/278 (53%), Gaps = 5/278 (1%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKP 141
           I  + S+    S +  +F  ++  N+F WN ++  Y  +     A+ ++S++  V+  KP
Sbjct: 40  IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKP 99

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D  T P ++KA + L D+ +G+  H +A +    S VFV N+L+ MY   G V++A KVF
Sbjct: 100 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGA 259
           E M ER+LV+WNS+I GF+ NG   E+   FREM    E   PD  T+V++   CA    
Sbjct: 160 EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEED 219

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           +  G   H    K+GL++ + VNN+L+D YSKC  +  AQ +F +  K+N VSW++++ G
Sbjct: 220 IEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG 279

Query: 320 LAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYAC 355
            A          L ++M  E       E T + VL  C
Sbjct: 280 YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 247 MVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           M  L  AC +   + +GRR H  V       ++  +N  ++  YS CG    ++ VF ++
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           R++N   W+ +V     N   ++A+ +F E+  +    P   T   V+ AC+  G++D G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLG 118

Query: 365 FS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
                  M  +  ++  +     ++ + G+ GLV++A +  ++M    N V W +++   
Sbjct: 119 LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHM-PERNLVSWNSIICGF 177

Query: 424 TIHG 427
           + +G
Sbjct: 178 SENG 181


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/591 (40%), Positives = 365/591 (61%), Gaps = 3/591 (0%)

Query: 28  HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
           H+   ++ + I +V  +   LL    +S  +L Q+ A++I+  +  +   + K + +   
Sbjct: 14  HAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTE 72

Query: 88  S-LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           S     MSYA ++F  + +P+I  +N+M RGY+   NPL    L+ ++   GI PD +T+
Sbjct: 73  SPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTF 132

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           P LLKA +    +  G Q H ++++ G +  V+V  +L++MY     V  A  VF+ + E
Sbjct: 133 PSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVE 192

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
             +V +N++I G+A   +PNEAL+LFREM  + ++P+  T++S+ S+CA LG+L LG+  
Sbjct: 193 PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWI 252

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y  K      V VN AL+D ++KCG +  A  +F +MR ++  +WS ++V  A +G  
Sbjct: 253 HKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKA 312

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           ++++ +F+ M      P E+TF+G+L ACSH G V+EG  YF +M  ++GI+P I+H+G 
Sbjct: 313 EKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGS 372

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           MVDLL  AG ++ AYE+I  + + P  ++WR LL AC+ H +  +AE     + +L+  H
Sbjct: 373 MVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH 432

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            GDYV+LSNLYA  ++W  V  +R+ M   +  K PG S +E+ N V EFF GD     T
Sbjct: 433 GGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSAT 492

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            ++H  L E+ K+LKL GYVP T  V  A++ ++EKE  L YHSEK+AI F L+NT PGT
Sbjct: 493 TKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGT 552

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +RVVKNLRVC DCH A KLIS ++ R++V RD  RFHHF+DG CSC D+W
Sbjct: 553 TIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 355/559 (63%), Gaps = 3/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+QVHA  I  G+  +   L K +  ++V  +  ++YA  +F  V +P+ F ++++++  
Sbjct: 107 LQQVHAHIIVSGLHRSRSLLTKLI--SLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVT 164

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++    +  V  Y +M  SG     +T+  ++KA + L+ +R+G++ HS  +  G+ S +
Sbjct: 165 SKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDM 224

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +VQ +L+ +YA    +K A KVF+ M +R ++AWNS+I+G+  NG P E++ LF  M   
Sbjct: 225 YVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMES 284

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G +PD  T+VSL S+C++LGAL  G   H Y    G   NV +  +L++ Y++CG +  A
Sbjct: 285 GFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKA 344

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M++RN V+W+ ++ G  ++G+G++A+ELF EM   G  P  +TFV VL AC+H 
Sbjct: 345 REVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHS 404

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWR 417
           G++D+G   F  MK+ YG++P +EH  CMVD+ GRAGL+  AY++I+  +   P   +W 
Sbjct: 405 GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWT 464

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           ++LGAC +H +  +       +L +EP++ G YV+LSN+YA   R   V+ VR  M + R
Sbjct: 465 SMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRR 524

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G+S +E+  + + F MGD+SHPQT  I+  L E+  +    GYVP  E++  D+E
Sbjct: 525 LKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLE 584

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEE++ AL YHSEK+A+AF L+ T  G  +R+VKNLR+C DCH AIK IS +  REI+VR
Sbjct: 585 EEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVR 644

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D+ RFHHFKDG CSC DYW
Sbjct: 645 DKFRFHHFKDGSCSCLDYW 663


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/568 (42%), Positives = 348/568 (61%), Gaps = 7/568 (1%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSHVQDPNIFT 110
           S K +L Q+HA  IR  + +  P +    +  I +LS P+   SY+   F  +  P +  
Sbjct: 14  SHKTRLLQIHAHIIRTTL-IQYPTVSLQFLSRI-ALSGPLQDASYSQRFFGQLSHPLVSH 71

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +NTMIR  + S +P   + LY  M   GI  D  +  F +K+  +   +  G Q H    
Sbjct: 72  YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIF 131

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           ++G +    +  +++ +Y+      DACKVF+ M  RD VAWN +I+    N +  +AL+
Sbjct: 132 KDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALS 191

Query: 231 LFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           LF  M  +S   EPD  T + L  ACA L AL  G R H Y+ + G  D +N+ N+L+  
Sbjct: 192 LFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISM 251

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           YS+CG +  A  VF+ M  +N VSWS ++ GLA+NG+G+EA+E F+EM   G +P + TF
Sbjct: 252 YSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTF 311

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
            GVL ACS+ GMVDEG S+F RM  E+G+ P + H+GCMVDLLGRAGL+ +AY+ I +M+
Sbjct: 312 TGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMV 371

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468
           + P++ +WRTLLGAC IHGH  + E     L++L+ + +GDYVLL N+Y+    W  V E
Sbjct: 372 VKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAE 431

Query: 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           VR+ M  + ++ TPG S +EL   V EF + D SH +  EI+  L EI  +L++ GYV  
Sbjct: 432 VRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVE 491

Query: 529 TENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
             +    ++++EK   LS+HSEK+A+AF ++ T PGT +RV  NLRVC DCH  +KL S 
Sbjct: 492 LSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSG 551

Query: 589 VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VY+R++V+RD +RFHHF+ G CSC DYW
Sbjct: 552 VYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 365/612 (59%), Gaps = 49/612 (8%)

Query: 48  LLQVCA--SSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           LL  CA  SS     +VH+  I+HG      + N  +  Y ++  ++L      A  +F 
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNL------ARTLFD 170

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
                ++ ++NTMI+GYAE   P  A+ L+ +M  SGI PD  T+  L    S L +  +
Sbjct: 171 ESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNV 230

Query: 162 GEQTHSVAIRN--GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-------------- 205
           G+Q H+   +N    +S + +++++V MYA  G +  A +VF  M               
Sbjct: 231 GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290

Query: 206 ------------------ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
                             ERD+++W ++I+G++  G+ +EAL LF+EM + G++PD  T+
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350

Query: 248 VSLFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           V++ SACA LGA  LG+R  H Y+     + N  +  A++D Y+KCG I +A  +FR + 
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410

Query: 307 K--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           K  +    +++++ GLA +G G+ A+ +F+E+   G  P EVTFVGVL AC H G+++EG
Sbjct: 411 KNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG 470

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
              F+ M + YGI P++EH+GCMVDLLGR G +++AY+ +Q M    N+VIWR LL AC 
Sbjct: 471 KKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACR 530

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            HG+  I EIA   LL++E +H   YVLLSN+ A   +W   ++VR+ M    ++K PG 
Sbjct: 531 THGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGW 590

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +ELG  +  F   D+SHPQ +EI  ML ++  +LK  GYVP T  V  DI+EEEKE  
Sbjct: 591 SYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESV 650

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           +SYHSEK+A+AF L+  +P   +R+VKNLR+CADCH A KL+S++Y REI VRD  RFHH
Sbjct: 651 VSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHH 710

Query: 605 FKDGHCSCRDYW 616
           F++G CSC D+W
Sbjct: 711 FRNGSCSCMDFW 722



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 210/377 (55%), Gaps = 47/377 (12%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPM 93
           ENP +      + LL+ C S K  L Q+HA +I +G+      + + +  ++++     +
Sbjct: 8   ENPSS------LCLLESCKSFKQGL-QIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGL 60

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKA 152
            ++  +FS +  PN+F WNTMIRGY+ S NP  A+ LY  M   GI P +  T+PFLL +
Sbjct: 61  DHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNS 120

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L+ +  G + HS  I++GFES +FV+N+L+H+Y+ FG++  A  +F+    RDLV++
Sbjct: 121 CARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSY 180

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+A   +P  AL LF EM + G+ PD +T V+LFS C+ L    +G++ H  V+K
Sbjct: 181 NTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240

Query: 273 --VGLSDNVNVNNALLDFYSKCGIIIAAQRV----------------------------- 301
               +  N+ + +A++D Y+KCG+I  A+RV                             
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300

Query: 302 ---FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              F  M +R+ +SW+ ++ G +  G   EALELFKEME  G  P EVT V VL AC+  
Sbjct: 301 RKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARL 360

Query: 359 GMVDEGFSYFKRMKDEY 375
           G  D G    KR+  +Y
Sbjct: 361 GAFDLG----KRLYHQY 373



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 134/280 (47%), Gaps = 7/280 (2%)

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK----VFE 202
           P  L  +      + G Q H+  I NG    +F  + L+  ++  G  KD       +F 
Sbjct: 10  PSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGS-KDGLDHSRLLFS 68

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALA 261
            +   +L  WN++I G++ +  P EA+ L+  M ++G+  P+ +T   L ++CA L +L 
Sbjct: 69  QIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLE 128

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G   H+++ K G   ++ V NAL+  YS  G +  A+ +F E   R+ VS++T++ G A
Sbjct: 129 PGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYA 188

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPK 380
                + AL LF EM+  G +P E TFV +   CS     + G     ++ K+   I   
Sbjct: 189 EVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           I     +VD+  + GL+  A      M    +A  W +++
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 355/559 (63%), Gaps = 3/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+QVHA  I  G+  +   L K +  ++V  +  ++YA  +F  V +P+ F ++++++  
Sbjct: 43  LQQVHAHIIVSGLHRSRSLLTKLI--SLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVT 100

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++    +  V  Y +M  SG     +T+  ++KA + L+ +R+G++ HS  +  G+ S +
Sbjct: 101 SKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDM 160

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +VQ +L+ +YA    +K A KVF+ M +R ++AWNS+I+G+  NG P E++ LF  M   
Sbjct: 161 YVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMES 220

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G +PD  T+VSL S+C++LGAL  G   H Y    G   NV +  +L++ Y++CG +  A
Sbjct: 221 GFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKA 280

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M++RN V+W+ ++ G  ++G+G++A+ELF EM   G  P  +TFV VL AC+H 
Sbjct: 281 REVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHS 340

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWR 417
           G++D+G   F  MK+ YG++P +EH  CMVD+ GRAGL+  AY++I+  +   P   +W 
Sbjct: 341 GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWT 400

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           ++LGAC +H +  +       +L +EP++ G YV+LSN+YA   R   V+ VR  M + R
Sbjct: 401 SMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRR 460

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G+S +E+  + + F MGD+SHPQT  I+  L E+  +    GYVP  E++  D+E
Sbjct: 461 LKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLE 520

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEE++ AL YHSEK+A+AF L+ T  G  +R+VKNLR+C DCH AIK IS +  REI+VR
Sbjct: 521 EEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVR 580

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D+ RFHHFKDG CSC DYW
Sbjct: 581 DKFRFHHFKDGSCSCLDYW 599


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/607 (40%), Positives = 369/607 (60%), Gaps = 47/607 (7%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
             LKQ+HA  I+     +     + L ++ VS    + YA  IF  +  PN F++NT+IR
Sbjct: 25  QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 84

Query: 117 GYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
             +ES +P  A+ ++ +M     ++P+  T+P + KA  +   +R G Q H +A++ G +
Sbjct: 85  ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 144

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVF---------------------------------- 201
           S  FV +++V MY + G ++DA ++F                                  
Sbjct: 145 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 204

Query: 202 ------------ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                       + M +R +V+WN +I G+A +G   EA+ +FREM    V P+  T+VS
Sbjct: 205 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVS 264

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  A + LGAL LG+  H Y  +  +  +  + +AL+D Y+KCG I  A +VF  + KRN
Sbjct: 265 VLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRN 324

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            V+WST++ GLA++G  K+ L+ F++ME  G +P +VT++G+L ACSH G+V+EG  +F 
Sbjct: 325 VVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFD 384

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M    G+ P+IEH+GCMVDLLGRAGL++++ E I NM + P+ VIW+ LLGAC +HG+ 
Sbjct: 385 HMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNV 444

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            + +     L++L P  SG YV LSN+YA    W  V +VR  M +  V+K PG S +EL
Sbjct: 445 EMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIEL 504

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
              + EF + D SHP++++IH+ML E+++ L L GY P T  V  +++EE+KE +L+YHS
Sbjct: 505 DGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHS 564

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EKIAIAF L++T P TP+R+ KNLR+C DCH +IKLISK+Y R+I+VRDR RFHHF +G 
Sbjct: 565 EKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGS 624

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 625 CSCMDYW 631


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/514 (45%), Positives = 327/514 (63%), Gaps = 31/514 (6%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M +  + PDT T  F+LKA  KL+DV  G+  H +  + GF S +F+QN ++++Y   G 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 194 VKDACKVFELMSERDLVAWN-------------------------------SVINGFASN 222
           + DA  +FE M +RD V WN                               S+I+GF   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           GKPNEA+ LF ++  E V P+  T+VS+ +ACA+LG L LGR  H Y  K G   NV+V 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y KCG +  A+RVF EM +R  VSWS ++ GLA++G  +EAL LF EM   G  
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  VTF+G+L+ACSH G++DEG  +F  M  +YG++P+IEH+GC+VDL  RAGL+++A+E
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +I +M + PN V+W  LLG C +H +  +AE A   L +L+P + G YV++SN+YA  +R
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAER 360

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W +   VR+ M    VKKT G S + +   V EF  GD++HPQ E+I  +  ++  K+K 
Sbjct: 361 WEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKR 420

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GY P+T  V  D+EE+EKE  L  HSEK+A+ F L+ T  GTP+R++KNLRVC DCH A
Sbjct: 421 RGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAA 480

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +K+IS + SREI+VRDR+RFH F+DG CSCRD+W
Sbjct: 481 LKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A+  F  + + N+ +W +MI G+ +   P  A++L+ K+    ++P+  T   +L A + 
Sbjct: 95  AYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACAD 154

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+ +G   H  + ++GF+  V V N+L+ MY   G +++A +VF  M ER +V+W+++
Sbjct: 155 LGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAM 214

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-TYVWKVG 274
           I G A +G+  EAL LF EM   GV+P+G T + L  AC+ +G +  GRR   +     G
Sbjct: 215 IAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYG 274

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN---GFGKEAL 330
           +   +     ++D +S+ G++  A      M  K N V W  L+ G  V+      +EA+
Sbjct: 275 VIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAI 334

Query: 331 ELFKEME 337
           +   E++
Sbjct: 335 KHLSELD 341


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/505 (46%), Positives = 326/505 (64%), Gaps = 2/505 (0%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MIR   ES      +  YS M  + + P   ++  +L++ +   + ++GE  H   ++ G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL--VAWNSVINGFASNGKPNEALTL 231
           FE  + +Q  L+  YA  G+V++A  +F+ M+ER+   V WN++I+ +   G+   A+++
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F++M SE V+P   TMVSL SACA LGAL +G   H Y+    L  +V + NAL+D Y K
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCK 180

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG + AA  VF  + ++N   W++++VGL +NG G+EA+  F  ME  G  P  VTFVG+
Sbjct: 181 CGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGI 240

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L  CSH G++  G  YF  M   YG+ P +EH+GCMVDLLGRAG +K+A E I+ M M P
Sbjct: 241 LSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP 300

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           N+++  +LL AC IH  + + E     LL+L+P   G+YV LSNLYA   RW +V   R+
Sbjct: 301 NSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRK 360

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M+K  V KTPG S +E+ N V EF  GD SHPQ  +I+A L EI K+LK +G+VP T N
Sbjct: 361 LMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTAN 420

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  DIEEEEKE A+ YHSE+IA+AF L++T PG  +RVVKNLR C+DCH A+KLIS  + 
Sbjct: 421 VLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFK 480

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REI+VRDR RFHHF++G CSC DYW
Sbjct: 481 REIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 5/264 (1%)

Query: 96  AHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           A N+F ++  ++ N  TWNTMI  Y +      A+ ++ +M    +KP   T   LL A 
Sbjct: 84  ARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 143

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L  + MGE  H        +  V + N+L+ MY   G ++ A  VF  +S +++  WN
Sbjct: 144 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+I G   NG+  EA+  F  M  EG++PDG T V + S C+  G L+ G+R  + +  V
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 274 -GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALE 331
            GL   V     ++D   + G +  A  + R M  K N++   +L+    ++   K   +
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 323

Query: 332 LFKE-MEIGGFVPGEVTFVGVLYA 354
           + ++ +E+     G   F+  LYA
Sbjct: 324 VTQQLLELDPCDGGNYVFLSNLYA 347


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/523 (43%), Positives = 335/523 (64%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+ N   A+EL+ +M  + I+PD  T   ++ A ++
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQ 278

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF S + + NSL+ +Y+  G ++ AC +FE +  +D+++WN++
Sbjct: 279 SGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTL 338

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
             ++  ++  +L+D Y+KCG I AA +VF  +  ++  SW+ ++ G A++G    A ++F
Sbjct: 399 SATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIF 458

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACS  GM+D G   F+ M  +Y I PK+EH+GCM+DLLG 
Sbjct: 459 SRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGH 518

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I NM M P+ VIW +LL AC I G+  + E     L+++EP++ G YVLL
Sbjct: 519 SGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLL 578

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V ++R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 579 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 244/457 (53%), Gaps = 44/457 (9%)

Query: 27  YHSTPASQENPITSVVR-KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           +H  P+S + P  S+     ++LL  C + +  L+ +HA  I+ G+   N  L K L   
Sbjct: 17  FHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQ-SLRLIHAQMIKTGLHNTNYALSKLLELC 75

Query: 86  IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
           ++S  F  + YA ++F  +Q+PN+  WNTM RG+A S++P+ A++LY  M   G+ P+++
Sbjct: 76  VISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-- 202
           T+PFLLK+ +K    + G+Q H   ++ G++  +FV  SL+ +Y   G ++DA KVF+  
Sbjct: 136 TFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRS 195

Query: 203 --------------------------LMSE---RDLVAWNSVINGFASNGKPNEALTLFR 233
                                     L  E   +D+V+WN++I+G+A  G   EAL LF+
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           EM    + PD  TMV++ SACA+ G++ LGR+ H+++   G   N+ + N+L+D YSKCG
Sbjct: 256 EMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCG 315

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A  +F  +  ++ +SW+TL+ G       KEAL LF+EM   G  P +VT + +L 
Sbjct: 316 ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375

Query: 354 ACSHCGMVDEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           AC+H G +D G        KR+K              ++D+  + G ++ A++ + N ++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKSATNASSLRT---SLIDMYAKCGDIEAAHQ-VFNSIL 431

Query: 410 PPNAVIWRTLLGACTIHGH--SAIAEIARSTLLQLEP 444
             +   W  ++    +HG   +A    +R   + +EP
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEP 468


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/505 (44%), Positives = 329/505 (65%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N+MIR Y +    L ++ +++ MH   I PD+ T+P +LKA ++L D  +G+  H + I+
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF   V+   +LVH+Y     + DA ++F+ M ER+ V WN++I G+  N K  +A+  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FR M ++G +P   T+V + SAC+ LGA   G+  H +++   L  NV V  AL+D Y+K
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +   ++VF E+R++N  +W+ L+ G A+NG G  AL+ F  M +  F P EVTF+GV
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC H G+V EG   F  MK ++G+ P+IEH+GCMVDLLGRAGL+++A E IQ+M + P
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEP 357

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           + +IWR LL AC +HG++ + E     L++LEP +  +YVLLSN+Y+ E+RW  V ++R 
Sbjct: 358 DPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRG 417

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M    ++K PG S +E+ N V+EF   +   P+ E I+  L  + KKLK  GYV  T+ 
Sbjct: 418 MMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDM 477

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
              DIE+EEKE ++ YHSEK+A+AF L+N+     +R+VKNLR+C DCH   K++S VY 
Sbjct: 478 ALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYK 537

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           R IVVRDR+RFHHF +G CSCRDYW
Sbjct: 538 RYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 12/292 (4%)

Query: 50  QVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDP 106
           Q+C +   K+  +H   I+ G   +      Y   A+V L      +S A  +F  + + 
Sbjct: 101 QLCDTGVGKM--IHGIVIQMGFICD-----VYTSTALVHLYCTCLSISDASQLFDEMPER 153

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  TWN +I GY  +   + A++ +  M   G +P   T   +L A S L     G+  H
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIH 213

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
                N     VFV  +L+ MYA  G V +  KVFE + E+++  WN +I+G+A NG+ +
Sbjct: 214 EFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGD 273

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR-RAHTYVWKVGLSDNVNVNNAL 285
            AL  F  M  E  +PD  T + +  AC   G +  GR +  +   + GL   +     +
Sbjct: 274 AALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCM 333

Query: 286 LDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           +D   + G++  A  + + M  + + + W  L+    V+G  K    + K +
Sbjct: 334 VDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRL 385


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/514 (45%), Positives = 336/514 (65%), Gaps = 11/514 (2%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D ++F   T+I  YAE A  + A +++ +M    I+P+   +  ++ A  +   V+  EQ
Sbjct: 138 DSHLFVGTTLISMYAECACLVFARKVFDEM----IEPNIVAWNAIVAACFRCEGVKDAEQ 193

Query: 165 T-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
               + IRN     +   N ++  Y   G ++ A +VF  M  +D V+W+++I GFA NG
Sbjct: 194 VFRCMPIRN-----LTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNG 248

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             N+A   FRE+  EG+ P+  ++  + SACA+ GA   GR  H +V K G    ++VNN
Sbjct: 249 NFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN 308

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D YSKCG +  A+ VF  M +R+AVSW+ ++ G+A++G+G+EA+ LF EME     P
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             +TF+ +LYACSH G+VD G SYF RM + YGI P IEH+GCMVDL GRAG ++QAY++
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           +  M + PN ++WRTLLGAC+IHG+  +A   +  L +L+P++SGD+VLLSN+YA   +W
Sbjct: 429 VCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKW 488

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +V  +RR+M  +R+KKTPG S++E+   ++ F  G++ +    E H  L EI  +L++E
Sbjct: 489 KDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIE 548

Query: 524 -GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GYVP   +V  DIE EEKED++S HSEK+A+AF +     G  +RVVKNLR+C DCH  
Sbjct: 549 GGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTV 608

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KLISKVY  EIVVRDRSRFH F  G CSCRDYW
Sbjct: 609 MKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 183/387 (47%), Gaps = 47/387 (12%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSH 102
           C+ L   C S +  +KQ+ A   +    LN+  L  GK L++  V+L   + YA  +F  
Sbjct: 8   CLALFSKCKSLR-TVKQIQALIFK--TCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLD 64

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRM 161
           +++P++F +NT+IRG ++S  P  A++L+ +M    +  PD+ ++ FLLKA +    +  
Sbjct: 65  IRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN 124

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G Q H +A+  G +S +FV  +L+ MYA    +  A KVF+ M E ++VAWN+++     
Sbjct: 125 GLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFR 184

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                +A  +FR M                                          N+  
Sbjct: 185 CEGVKDAEQVFRCMPIR---------------------------------------NLTS 205

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            N +L  Y+K G +  A+ VF +M  ++ VSWST++VG A NG   +A   F+E+   G 
Sbjct: 206 WNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGM 265

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P EV+  GVL AC+  G  + G        ++ G +  I     ++D   + G +  A 
Sbjct: 266 RPNEVSLTGVLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMAR 324

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGH 428
               NML   +AV W  ++    +HG+
Sbjct: 325 LVFDNML-RRSAVSWTAMIAGMAMHGY 350



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +   +  +W+TMI G+A + N   A   + ++   G++P+  +   +L A
Sbjct: 219 LQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSA 278

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++      G   H    ++GF  ++ V N+L+  Y+  G++  A  VF+ M  R  V+W
Sbjct: 279 CAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSW 338

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-----RRAH 267
            ++I G A +G   EA+ LF EM    ++PD  T +S+  AC+  G + LG     R  +
Sbjct: 339 TAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVN 398

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
           TY    G+   +     ++D Y + G +  A     +M    N + W TL+   +++G
Sbjct: 399 TY----GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/588 (43%), Positives = 363/588 (61%), Gaps = 20/588 (3%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQD 105
           T+LQ C S   +LKQ+HAF++R   P     L  Y     +S SF  ++YA  +F  +++
Sbjct: 30  TVLQTC-SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIEN 88

Query: 106 PNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGE 163
            + F WNT+IR  A + +    A  LY KM   G   PD HT+PF+LKA + +     G+
Sbjct: 89  HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGK 148

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H   +++GF   V+V N L+H+Y + G +  A KVF+ M ER LV+WNS+I+     G
Sbjct: 149 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 208

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK---VGLSDNVN 280
           + + AL LFREM     EPDGYTM S+ SACA LG+L+LG  AH ++ +   V ++ +V 
Sbjct: 209 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 267

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EI 338
           V N+L++ Y KCG +  A++VF+ M+KR+  SW+ +++G A +G  +EA+  F  M  + 
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 327

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P  VTFVG+L AC+H G V++G  YF  M  +Y I P +EH+GC+VDL+ RAG + 
Sbjct: 328 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 387

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIARSTLLQLEPKHS------GDY 450
           +A + + +M M P+AVIWR+LL AC   G S     EIAR+ +   E   S      G Y
Sbjct: 388 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 447

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLS +YA   RW +V  VR+ M +  ++K PG S +E+     EFF GD SHPQT++I+
Sbjct: 448 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIY 507

Query: 511 AMLAEITKKLKLEGYVP-RTENVFADIEEE-EKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
             L  I  +L+  GY+P R++    D   +  KE +L  HSE++AIAF L+N  P TP+R
Sbjct: 508 QQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIR 567

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + KNLRVC DCH   KLISKV++ EI+VRDR RFHHFKDG CSC DYW
Sbjct: 568 IFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 376/636 (59%), Gaps = 66/636 (10%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++LL  C + +  L Q+H   I++GV  ++   GK +++  +S+S  + YA  +     +
Sbjct: 1   LSLLNSCKNLR-ALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 59

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQ 164
           P+ F +NT++RGY+ES  P  +V ++ +M   G + PD+ ++ F++KA+     +R G Q
Sbjct: 60  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 119

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN------- 217
            H  A+++G ES +FV  +L+ MY   G V+ A KVF+ M + +LVAWN+VI        
Sbjct: 120 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 179

Query: 218 ------------------------GFASNGKPNEALTLFREM------------------ 235
                                   G+   G+   A  +F EM                  
Sbjct: 180 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 239

Query: 236 -------------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
                           G+ P+  ++  + SAC++ G+   G+  H +V K G S  V+VN
Sbjct: 240 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVN 299

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           NAL+D YS+CG +  A+ VF  M+ KR  VSW++++ GLA++G G+EA+ LF EM   G 
Sbjct: 300 NALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGV 359

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  ++F+ +L+ACSH G+++EG  YF  MK  Y I P+IEH+GCMVDL GR+G +++AY
Sbjct: 360 TPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAY 419

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           ++I  M +PP A++WRTLLGAC+ HG+  +AE  +  L +L+P +SGD VLLSN YA   
Sbjct: 420 DFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 479

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           +W +V  +R++M+ +R+KKT   SLVE+G  +++F  G++      E H  L EI  +LK
Sbjct: 480 KWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLK 539

Query: 522 LE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
            E GY P   +   D+EEEEKED +S HSEK+A+AF L   + G  +R+VKNLR+C DCH
Sbjct: 540 DEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCH 599

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             +KL SKVY  EI+VRDR+RFH FKDG CSCRDYW
Sbjct: 600 AVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
          Length = 460

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/462 (52%), Positives = 325/462 (70%), Gaps = 17/462 (3%)

Query: 33  SQENPIT-SVVRKCITLLQV--CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           S+  P T   +R C+ LL++   A S    KQ+HA ++R GVP ++P L K+L++ + +L
Sbjct: 2   SEAIPSTRPALRHCVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAAL 61

Query: 90  -SFPMSYAHNIFSHVQ-----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
            + P+ YA  + S +      DP  F  NT++R  A S  P +A+EL+ +       PDT
Sbjct: 62  RAPPLRYAVAVLSRLLPHGPLDP--FPLNTVLRIAAGSPRPRVALELHRRRLA---LPDT 116

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           HTYP LL+A ++L  +R GE  H+ A +NGF +LVFVQNSLVH+Y A G  + A KVF+ 
Sbjct: 117 HTYPPLLQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDE 176

Query: 204 MS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           M    R+LV+WNS++N FA+NG+PNE LT+F EM      PDG+T+VS+ +ACAE GALA
Sbjct: 177 MPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALA 236

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGL 320
           LGRR H YV KVGL +N +V+NAL+D Y+KCG +  A+R+F EM   R  VSW++L+VGL
Sbjct: 237 LGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGL 296

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           A NGFGKEALELF  ME    VP E+T VGVLYACSHCG+VD+GF YF RMK++YGI P+
Sbjct: 297 AANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPR 356

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           IEH GCMVDLLGRAG V++AY+YI  M + PNAV+WRTLLG+C +H    + ++A   L+
Sbjct: 357 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 416

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
           +L+P HSGDYVLLSNLYA    W +V  +R+TMVK+RV+K P
Sbjct: 417 ELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNP 458


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/627 (41%), Positives = 354/627 (56%), Gaps = 71/627 (11%)

Query: 59   LKQVHA-FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
            LK++H+   I H +  +NP LG  L+ A      P S  H IF  +   N+  +N MIR 
Sbjct: 1043 LKKLHSKICIDHDLH-SNPSLGIKLMRAYAVCGEPWSTRH-IFDEIPKKNVVFFNVMIRS 1100

Query: 118  YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            Y  +     A+ ++  M   GI PD +TYP +LKA S   D+ +G Q H+  +R G +  
Sbjct: 1101 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 1160

Query: 178  VFVQN-------------------------------SLVHMYAAFGHVKDA---CKVFEL 203
            VFV N                               SLV   A  G   DA   CK  EL
Sbjct: 1161 VFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 1220

Query: 204  M----------------------------------SERDLVAWNSVINGFASNGKPNEAL 229
            +                                  + + LV+WN +I  + +N  P EA+
Sbjct: 1221 LGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAV 1280

Query: 230  TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
             +F +M    V+PD  ++ S+  AC +L AL LGRR H YV +  L  N+ + NAL+D Y
Sbjct: 1281 DIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMY 1340

Query: 290  SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            +KCG +  A+ VF +M+ R+ VSW++++    +NG G++A+ LF  M+  G  P  + FV
Sbjct: 1341 AKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFV 1400

Query: 350  GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
             VL ACSH G++DEG  YFK M +E  I+P+IEHF CMVDLLGRAG V +AY +I+ M M
Sbjct: 1401 SVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPM 1460

Query: 410  PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
             PN  +W  LL AC ++ +  I  +A   L QL P+ SG YVLLSN+YA   RW +V  V
Sbjct: 1461 EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTV 1520

Query: 470  RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
            R  M  + +KK PG S  EL NRV  F  GD+SHPQ+++I+  L  +  K+K  GYVP T
Sbjct: 1521 RSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPET 1580

Query: 530  ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
            ++   D+EEE+KE  L+ HSEK+AIAF ++NTAPG+P+R+ KNLRVC DCH+A KLISK+
Sbjct: 1581 DSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKI 1640

Query: 590  YSREIVVRDRSRFHHFKDGHCSCRDYW 616
              REI +RD +RFHHF +G CSC DYW
Sbjct: 1641 VGREITIRDTNRFHHFYNGVCSCGDYW 1667


>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 341

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/340 (65%), Positives = 277/340 (81%), Gaps = 2/340 (0%)

Query: 6   MHSKQPSYEEISDLPCRVKSLYHSTP--ASQENPITSVVRKCITLLQVCASSKHKLKQVH 63
           MHS  P+ +++     +    Y + P  AS+ENPI  +V+KCI LLQ+CASSK+KL+Q+H
Sbjct: 1   MHSTPPTDQQLVLHSSQNPITYFTAPKPASKENPIPYIVKKCIALLQICASSKYKLQQIH 60

Query: 64  AFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESAN 123
           AFSIRHGV  NNPD+GK+LIY+IVS+S PM+YAHNIF+ +Q+PNIFTWNTMIRG+AES N
Sbjct: 61  AFSIRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQNPNIFTWNTMIRGHAESEN 120

Query: 124 PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
           P  A+ELY ++H + I+PDTHTYPFLLKA+SK+ +VR+GE+ HS++IRNGFESLVFVQNS
Sbjct: 121 PKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNGFESLVFVQNS 180

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           L+HMYAA G  + A K+FE M +RDLVAWN+ I+GFA NGKPNEAL L+ EM  EGVEPD
Sbjct: 181 LMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGKPNEALKLYMEMGLEGVEPD 240

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
           G+T+VSL SACAELGALALGRR H Y+ KVGL +N++ NN+L+D Y+KCG I  AQ+VF 
Sbjct: 241 GFTLVSLLSACAELGALALGRRIHAYMVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFD 300

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           EM  RN VSW++L+VGLAVNGFG EA+E FKEME  G VP
Sbjct: 301 EMELRNVVSWTSLIVGLAVNGFGMEAIEHFKEMEKQGLVP 340



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 16/273 (5%)

Query: 163 EQTHSVAIRNGF--------ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +Q H+ +IR+G         + L++   S+V + A   +   A  +F L+   ++  WN+
Sbjct: 57  QQIHAFSIRHGVLPNNPDMGKHLIY---SIVSVSAPMTY---AHNIFTLIQNPNIFTWNT 110

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I G A +  P  A+ L+  +    +EPD +T   L  A +++  + +G + H+   + G
Sbjct: 111 MIRGHAESENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNG 170

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
               V V N+L+  Y+ CG   +A ++F  M  R+ V+W+T + G A+NG   EAL+L+ 
Sbjct: 171 FESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGKPNEALKLYM 230

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM + G  P   T V +L AC+  G +  G      M  + G+   +     ++DL  + 
Sbjct: 231 EMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMV-KVGLDENLHANNSLIDLYAKC 289

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G ++ A +    M +  N V W +L+    ++G
Sbjct: 290 GRIRDAQQVFDEMEL-RNVVSWTSLIVGLAVNG 321


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/577 (40%), Positives = 353/577 (61%), Gaps = 10/577 (1%)

Query: 40  SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           S + KC  + Q+        KQVHA     G+ +++  +   L+Y + +    +  AH +
Sbjct: 8   STLFKCRNIFQI--------KQVHAQVTTTGI-IHDLIVANKLLY-MCAKHKDLVTAHLL 57

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F+ +++ +  +W+ MI G+ ++ +     + + ++  +G KPD  + PF++KA      +
Sbjct: 58  FNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGL 117

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            MG   HS  ++NG     FV ++LV MYA  G + +A ++F+ M ++DLV    +I G+
Sbjct: 118 IMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGY 177

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  GKPNE+  LF +M  +G  PD   MV++ +ACA+LGA+   R  H YV     S +V
Sbjct: 178 AECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDV 237

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +  A++D Y+KCG I +++ +F  M ++N +SWS ++     +G G+EALELF  M   
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNS 297

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G +P  +TF+ +LYACSH G+VD+G   F  M   YG+ P ++H+ CMVDLLGRAG + Q
Sbjct: 298 GIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ 357

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A   I+NM +  +  IW   LGAC IH    +AE A   LL L+ ++ G Y+LLSN+YA 
Sbjct: 358 ALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYAN 417

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             RW +V ++R  M K R+KK PG++ +E+ N ++ F  GD SH ++ EI+ ML  +++K
Sbjct: 418 AGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQK 477

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           L+  GYVP T +V  D++EE K   L  HSEK+AIAF L+ T  GTP+R+ KNLRVC DC
Sbjct: 478 LESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDC 537

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H   KL+S +  R+I+VRD +RFHHFK+G CSC DYW
Sbjct: 538 HSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 10/286 (3%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           F +  + K  ++   +Q H+     G    + V N L++M A    +  A  +F  M ER
Sbjct: 5   FFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER 64

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+W+ +I GF  NG        FRE+   G +PD +++  +  AC +   L +GR  H
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIH 124

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
           + V K GL  +  V + L+D Y+KCG+I  A+++F  M K++ V+ + ++ G A  G   
Sbjct: 125 STVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEH 383
           E+  LF +M   GFVP +V  V ++ AC+  G +++      R+  +Y    +    +E 
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKA-----RLVHDYVCARRYSLDVEL 239

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
              M+D+  + G +  + E    M    N + W  ++GA   HG  
Sbjct: 240 GTAMIDMYAKCGSIDSSREIFDRM-EQKNVISWSAMIGAYGYHGQG 284


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/604 (40%), Positives = 360/604 (59%), Gaps = 34/604 (5%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQ 104
           ++ LQ C S + +LKQ+HA  ++ G+  ++  + K+L + I S S   + YA  +F    
Sbjct: 18  MSCLQRC-SKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            P+ F WN MIRG++ S  P  ++ LY +M  S    + +T+P LLKA S L+      Q
Sbjct: 77  RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+   + G+E+ V+  NSL++ YA  G+ K A  +F+ + E D V+WNSVI G+   GK
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196

Query: 225 PNEALTLFREMASEG-------------------------------VEPDGYTMVSLFSA 253
            + ALTLFR+MA +                                VEPD  ++ +  SA
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA+LGAL  G+  H+Y+ K  +  +  +   L+D Y+KCG +  A  VF+ ++K++  +W
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + L+ G A +G G+EA+  F EM+  G  P  +TF  VL ACS+ G+V+EG   F  M+ 
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMER 376

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +Y + P IEH+GC+VDLLGRAGL+ +A  +IQ M + PNAVIW  LL AC IH +  + E
Sbjct: 377 DYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 436

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
                L+ ++P H G YV  +N++A +++W    E RR M ++ V K PG S + L    
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD-IEEEEKEDALSYHSEKI 552
            EF  GDRSHP+ E+I +    + +KL+  GYVP  E +  D ++++E+E  +  HSEK+
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKL 556

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AI + L+ T PGT +R++KNLRVC DCH   KLISK+Y R+IV+RDR+RFHHF+DG CSC
Sbjct: 557 AITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSC 616

Query: 613 RDYW 616
            DYW
Sbjct: 617 GDYW 620


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/505 (44%), Positives = 329/505 (65%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N+MIR Y +    L ++ +++ MH   I PD+ T+P +LKA ++L D  +G+  H + I+
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF   V+   +LVH+Y     + DA ++F+ M ER+ V WN++I G+  N K  +A+  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FR M ++G +P   T+V + SAC+ LGA   G+  H +++   L  NV V  AL+D Y+K
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +   ++VF E+R++N  +W+ L+ G A+NG G  AL+ F  M +  F P EVTF+GV
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC H G+V EG   F  MK ++G+ P+IEH+GCMVDLLGRAGL+++A E IQ+M + P
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEP 357

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           + +IWR LL AC +HG++ + E     L++LEP +  +YVLLSN+Y+ E+RW  V ++R 
Sbjct: 358 DPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRG 417

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M    ++K PG S +E+ N V+EF   +   P+ E I+  L  + KKLK  GYV  T+ 
Sbjct: 418 MMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDM 477

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
              DIE+EEKE ++ YHSEK+A+AF L+N+     +R+VKNLR+C DCH   K++S VY 
Sbjct: 478 ALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYK 537

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           R IVVRDR+RFHHF +G CSCRDYW
Sbjct: 538 RYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 12/292 (4%)

Query: 50  QVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDP 106
           Q+C +   K+  +H   I+ G   +      Y   A+V L      +S A  +F  + + 
Sbjct: 101 QLCDTGVGKM--IHGIVIQMGFICD-----VYTSTALVHLYCTCLSISDASQLFDEMPER 153

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  TWN +I GY  +   + A++ +  M   G +P   T   +L A S L     G+  H
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIH 213

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
                N     VFV  +L+ MYA  G V +  KVFE + E+++  WN +I+G+A NG+ +
Sbjct: 214 EFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGD 273

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR-RAHTYVWKVGLSDNVNVNNAL 285
            AL  F  M  E  +PD  T + +  AC   G +  GR +  +   + GL   +     +
Sbjct: 274 AALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCM 333

Query: 286 LDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           +D   + G++  A  + + M  + + + W  L+    V+G  K    + K +
Sbjct: 334 VDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRL 385


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/578 (42%), Positives = 361/578 (62%), Gaps = 13/578 (2%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS--FPMSY 95
           I  ++RKC         S   L+Q+HA  + H +P+++   G   I    +LS    + Y
Sbjct: 60  IALLIRKC--------RSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDY 111

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGI-KPDTHTYPFLLKAI 153
           A  +FS +Q PNIF+WN+MIRG ++S  P    V L+ KM   G   P+T T  F+LKA 
Sbjct: 112 ARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKAC 171

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           S ++ +  G+Q H+  +++GF S  FV+ +LV+ YA    +  A KVF+ +++R+LVAW+
Sbjct: 172 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 231

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I+G+A  G  NEAL LFR+M   GV PD  TMVS+ SACA  GAL  G+  H Y+ K 
Sbjct: 232 TMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQ 291

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
            +  ++ ++ AL++ Y+KCG I  A+ VF  M  ++  +WS+++VGLA+NG  ++ALE F
Sbjct: 292 LIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEF 351

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             ME     P  VTF+GVL AC+H G+V EG  Y+  M  E+GI+P +E +GCMVDLL R
Sbjct: 352 FRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCR 410

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           A LV+ A   ++ M + PN VIWRTLL  C    +   +E+    LL+LEP ++ +Y+LL
Sbjct: 411 ASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILL 470

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   +W  + +VR+ M    +K  PG S +E+   V EF MGD SHP+  E+  +L
Sbjct: 471 SNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREIL 530

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            +I+K++   G+ P   +V  ++ +EEKE+AL  HSE++AIA+ L+ T     +R+VKNL
Sbjct: 531 RDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNL 590

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           RVC DCH   K+IS  Y REI+VRDR RFH F +G CS
Sbjct: 591 RVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/568 (43%), Positives = 359/568 (63%), Gaps = 11/568 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KLKQ+HA +IR+    +N  L  Y     VS      YA  +F+ + +PN F WNT+I  
Sbjct: 40  KLKQIHAQAIRN-FSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGA 98

Query: 118 YAESAN-PLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            A S +    A+E++ +M   G ++PD HT+PFLLKA + +  +  G Q H+   + G +
Sbjct: 99  CARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLD 158

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             V+V NSL+H+YA+ G +  A KVFE M  R LV+WN +I+ +  +G    AL LF EM
Sbjct: 159 LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEM 218

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG---LSDNVNVNNALLDFYSKC 292
            +   EPDGYTM S+ SACA +GAL+LG  AH YV +     ++ +V +N++L+D YSKC
Sbjct: 219 QN-SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKC 277

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGV 351
           G +  AQ+VF  M K +  SW+++++ LA++G G+ AL+ F  + E+  F+P  VTFVGV
Sbjct: 278 GSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGV 337

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC+H GMV +G  YF  M ++Y I P++EH+GC+VDLL R+G + +A E + NM + P
Sbjct: 338 LSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKP 397

Query: 412 NAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
           +AVIWR+LL AC     G     E+A   L   +   SG YV+LS +YA  ++W +V  +
Sbjct: 398 DAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGII 457

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR- 528
           R+ M    V K PG S +E+     EFF GD SHP+ +EI+ ++  I +KL+  GY P  
Sbjct: 458 RKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDC 517

Query: 529 TENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
           ++    D  +  K+ +L  HSE++AIAF L+N  PGTPVR+ KNLRVC DCH   KLIS+
Sbjct: 518 SQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISE 577

Query: 589 VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +++ EI++RDR+RFHHFK G CSC D+W
Sbjct: 578 IFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/574 (41%), Positives = 351/574 (61%), Gaps = 9/574 (1%)

Query: 51  VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDPNI 108
           V ++ K  L+Q+HA  +R  + + N D+  +    +     P  ++Y+  +FS   +P +
Sbjct: 19  VSSTGKLHLRQIHAVLLRTSL-IRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTL 77

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGEQTHS 167
              NTMIR ++ S  P     L+  +  +   P +  +  F LK   K  D+  G Q H 
Sbjct: 78  SHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHG 137

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
               +GF S   +  +L+ +Y+   +  DACKVF+ + +RD V+WN +I+ +  N +  +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRD 197

Query: 228 ALTLFREMASE---GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            L LF +M ++    V+PD  T +    ACA LGAL  G++ H ++ + GLS  +N++N 
Sbjct: 198 VLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNT 257

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+  YS+CG +  A  VF  MR+RN VSW+ ++ GLA+NGFGKEA+E F EM   G  P 
Sbjct: 258 LVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPE 317

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
           E T  G+L ACSH G+VDEG  +F RM+  E+ I P + H+GC+VDLLGRA L+ +AY  
Sbjct: 318 EQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSL 377

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I++M M P++ IWRTLLGAC +HG+  + E   + L++ + + +GDYVLL N Y+   +W
Sbjct: 378 IKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKW 437

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V E+R  M K+R++  PG S +EL   V EF + D SHP+ EEI+ MLAEI ++LK+ 
Sbjct: 438 EKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIA 497

Query: 524 GYVPRTENVFADIE-EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           GYV    +   +++ EEEK  AL YHSEK+AIAF ++ T P T +RV KNLR C DCH  
Sbjct: 498 GYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNF 557

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            K +S VY R ++VRDRSRFHHFK G CSC D+W
Sbjct: 558 AKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 342/573 (59%), Gaps = 5/573 (0%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++L  C+  S+  + +Q+H   I+ G   +  D  +  + ++ +    +  A N+F  +
Sbjct: 411 MSILGACSRPSALKQGRQIHDRIIKAGYITD--DRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              N+  WN MI  Y +      AV  +  +   GIKPD+ T+  +L        + +G+
Sbjct: 469 SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGK 528

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
              S+ IR GFES + ++N+LV M+   G +  A  +F  M ERDLV+WN++I GF  +G
Sbjct: 529 WVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHG 588

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +   A   F+ M   GV+PD  T   L +ACA   AL  GRR H  + +  L  +V V  
Sbjct: 589 ENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGT 648

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            L+  Y+KCG I  A  VF  + K+N  SW++++ G A +G GKEALELF +M+  G  P
Sbjct: 649 GLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKP 708

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             +TFVG L AC+H G++ EG  +F+ MKD + I P++EH+GCMVDL GRAGL+ +A E+
Sbjct: 709 DWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEF 767

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I  M + P++ +W  LLGAC +H    +AE      L+L+P   G YV+LSN+YA    W
Sbjct: 768 INKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMW 827

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V ++R+ M+   V K PG S +E+  RV  F   D++HPQ EEIHA L  +  ++K  
Sbjct: 828 KEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKL 887

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GYVP T  V  D+E+ EKE AL +HSE++AIA+ L+ T P TP+ + KNLRVC DCH A 
Sbjct: 888 GYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTAT 947

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLISK+  R+I+ RD +RFHHFKDG CSC D+W
Sbjct: 948 KLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 171/331 (51%), Gaps = 2/331 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + D ++++WN ++ GY +      A  L+ +M   G+KPD +T+ ++L A + 
Sbjct: 158 AKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACAD 217

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             +V  G +  S+ +  G+++ +FV  +L++M+   G V DA KVF  +  RDL+ W S+
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A + +  +A  LF+ M  EGV+PD    VSL  AC    AL  G+R H  + +VGL
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGL 337

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V  ALL  Y+KCG +  A  VF  ++ RN VSW+ ++ G A +G  +EA   F +
Sbjct: 338 DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF+ +L ACS    + +G     R+  + G +        ++ +  + G
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII-KAGYITDDRVRTALLSMYAKCG 456

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            +  A    +  +   N V W  ++ A   H
Sbjct: 457 SLMDARNVFER-ISKQNVVAWNAMITAYVQH 486



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 12/387 (3%)

Query: 46  ITLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           ++LL+ C    +  + K+VHA     G+     D   Y+  A++S+      M  A  +F
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGL-----DTEIYVGTALLSMYTKCGSMEDALEVF 364

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
           + V+  N+ +W  MI G+A+      A   ++KM  SGI+P+  T+  +L A S+ + ++
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G Q H   I+ G+ +   V+ +L+ MYA  G + DA  VFE +S++++VAWN++I  + 
Sbjct: 425 QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYV 484

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            + K + A+  F+ +  EG++PD  T  S+ + C    AL LG+   + + + G   +++
Sbjct: 485 QHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLH 544

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           + NAL+  +  CG +++A  +F +M +R+ VSW+T++ G   +G  + A + FK M+  G
Sbjct: 545 IRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P ++TF G+L AC+    + EG      +  E  +   +     ++ +  + G +  A
Sbjct: 605 VKPDQITFTGLLNACASPEALTEG-RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDA 663

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +    N L   N   W +++     HG
Sbjct: 664 HLVFHN-LPKKNVYSWTSMITGYAQHG 689



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 185/390 (47%), Gaps = 8/390 (2%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSH 102
           + +L  CA +K+  K    FS+   +     D   ++  A++++      +  A  +F++
Sbjct: 209 VYMLNACADAKNVDKGGELFSL---ILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNN 265

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           +   ++ TW +MI G A       A  L+  M   G++PD   +  LLKA +    +  G
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           ++ H+     G ++ ++V  +L+ MY   G ++DA +VF L+  R++V+W ++I GFA +
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+  EA   F +M   G+EP+  T +S+  AC+   AL  GR+ H  + K G   +  V 
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            ALL  Y+KCG ++ A+ VF  + K+N V+W+ ++     +     A+  F+ +   G  
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P   TF  +L  C     ++ G  + + +    G    +     +V +    G +  A  
Sbjct: 506 PDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
              +M    + V W T++     HG +  A
Sbjct: 565 LFNDM-PERDLVSWNTIIAGFVQHGENQFA 593



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 155/289 (53%), Gaps = 2/289 (0%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           I+    TY  LL+   K  ++  GE+ H+    +  +  +F+ N L+ MYA  G+   A 
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           ++F+ M ++D+ +WN ++ G+  + +  EA  L  +M  +GV+PD YT V + +ACA+  
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            +  G    + +   G   ++ V  AL++ + KCG +  A +VF  + +R+ ++W++++ 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           GLA +   K+A  LF+ ME  G  P +V FV +L AC+H   +++G     RMK E G+ 
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLD 338

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            +I     ++ +  + G ++ A E + N++   N V W  ++     HG
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALE-VFNLVKGRNVVSWTAMIAGFAQHG 386



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%)

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ +N  +  G+ +EA+ +   + S  ++    T  SL   C +   L  G R H ++  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             +  ++ + N L+  Y+KCG   +A+++F EM  ++  SW+ L+ G   +   +EA  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
            ++M   G  P + TFV +L AC+    VD+G   F
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF 228


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/518 (41%), Positives = 334/518 (64%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF  + + ++ +WNT+I G A +      + +  +M  + +KPD+ T   +L  I++  D
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G++ H  +IR G ++ ++V +SL+ MYA    V D+C+VF L++ERD ++WNS+I G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
              NG  +E L  FR+M    ++P  Y+  S+  ACA L  L LG++ H Y+ + G  +N
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + + ++L+D Y+KCG I  A+++F  MR R+ VSW+ +++G A++G   +A+ELF++ME 
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMET 434

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  V F+ VL ACSH G+VDE + YF  M  ++GI P +EH+  + DLLGRAG ++
Sbjct: 435 EGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLE 494

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +AY++I  M + P   IW TLL AC +H +  +AE   + +L+++P ++G Y+LL+N+Y+
Sbjct: 495 EAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYS 554

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             +RW    + R +M +  ++KTP  S +E+ N+V+ F  GD SHP  E+I   +  + +
Sbjct: 555 AARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVE 614

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
            ++ EGYVP T  V  D+EEE+K+  +  HSE++AI F ++NT  G  +RV KNLRVC D
Sbjct: 615 LMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTD 674

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISK+  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 675 CHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 209/451 (46%), Gaps = 50/451 (11%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           S E  + +++R  +++      S+ + +Q+HA  ++              IY+ ++L   
Sbjct: 4   STEALVKALLRNPLSI-----KSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINL--- 55

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  +  +F+ +  P    W ++IR Y     P  ++  +  M  SG+ PD + +P +LK+
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-------------GHVKDAC- 198
            + L D+ +GE  H   IR G +  ++  N+L++MY+               G V D   
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 199 ------------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
                             K+FE+M E+DLV+WN++I G A NG   E L + REM    +
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD +T+ S+    AE   ++ G+  H    + GL  ++ V ++L+D Y+KC  +  + R
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR 295

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + +R+ +SW++++ G   NG   E L  F++M +    P   +F  ++ AC+H   
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 361 VDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           +  G     Y  R     G    I     +VD+  + G ++ A +    M +  + V W 
Sbjct: 356 LHLGKQLHGYITR----NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMVSWT 410

Query: 418 TLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
            ++  C +HG +  AI    +     ++P H
Sbjct: 411 AMIMGCALHGQAPDAIELFEQMETEGIKPNH 441



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 47  TLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFS 101
           +++  CA  ++ H  KQ+H +  R+G      D   ++  ++V +      +  A  IF 
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGF-----DENIFIASSLVDMYAKCGNIRTAKQIFD 399

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
            ++  ++ +W  MI G A       A+EL+ +M   GIKP+   +  +L A S
Sbjct: 400 RMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS 452


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/609 (41%), Positives = 372/609 (61%), Gaps = 48/609 (7%)

Query: 52  CASSKHKLKQVHAFSIRHGV---PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI 108
           C +++H LKQ+HA  I+ G    PL   +L K+L    +S    + YA   FS +  PN 
Sbjct: 25  CKTTRH-LKQIHAHFIKTGQIHHPLAAAELLKFLT---LSTQREIKYARKFFSQIHHPNC 80

Query: 109 FTWNTMIRGYAES-------ANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVR 160
           F+WNT+IR  A+S        N L A+  +S M   G ++P+  T+P +LKA +KLA + 
Sbjct: 81  FSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIE 140

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC---------------------- 198
            G+Q H   ++ G  S  FV+++LV +Y   G +KDA                       
Sbjct: 141 EGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGY 200

Query: 199 ----------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
                     ++F+ M  + +V+WN +I+G A NG   EA+ +F +M    V P+  T+V
Sbjct: 201 VRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLV 260

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-K 307
           S+  A + LGA+ LG+  H +  K  +  +  + +AL+D YSKCG I  A +VF  +R K
Sbjct: 261 SVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNK 320

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           +N ++WS ++ GLA++G  ++AL+ F  M+  G  P +V ++GVL ACSH G+V+EG S 
Sbjct: 321 KNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSI 380

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +  M +  G++P+IEH+GCMVDLLGRAG +++A + I NM + P+ VI + LLGAC +HG
Sbjct: 381 YYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHG 440

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           +  + E     L+   P  SG YV LSN++A E  W  V +VR  M +  ++K PG S +
Sbjct: 441 NIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWI 500

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           EL   + EF + D SHP+ E IH+ML E++ +L+  GY P T  V  +++E+EK+ AL Y
Sbjct: 501 ELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHY 560

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEKIAIAF L++T P TP+++VKNLRVC DCH +IKL+SK+Y+R+I+VRDR RFHHF++
Sbjct: 561 HSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFEN 620

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 621 GSCSCMDYW 629


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/519 (44%), Positives = 337/519 (64%), Gaps = 2/519 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN +I GYAE+ N   A+EL+ +M  + +KPD  T   +L A ++
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A + +G Q HS    +GF S + + N+L+ +Y   G V+ A  +FE +S +D+++WN++
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTL 307

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+S+  ++  +L+D Y+KCG I AAQ+VF  M  R+  SW+ ++ G A++G    A ++F
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIF 427

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M ++Y I PK+EH+GCM+DLLG 
Sbjct: 428 SRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGH 487

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I +M M P+ VIW +LL AC +HG+  + E     L+++EPK+SG YVLL
Sbjct: 488 SGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLL 547

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V + R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 548 SNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGML 607

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 667

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           RVC +CH A KLISK+Y REI+ RDR+RFHHF DG CSC
Sbjct: 668 RVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 228/432 (52%), Gaps = 48/432 (11%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP- 92
           + +P  S++  C TL          L+ +HA  I+ G+   N  L K + ++++S  F  
Sbjct: 1   RNHPSLSLLHNCKTL--------QSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDG 52

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA ++F  +Q+PN+  WNTM RG+A S++P+ A+ LY  M   G+ P+++T+PFLLKA
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA- 211
            +K    R G+Q H   ++ G +  ++V  SL+ MY   G  +DA KVF+  S RD+V+ 
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY 172

Query: 212 ------------------------------WNSVINGFASNGKPNEALTLFREMASEGVE 241
                                         WN++I+G+A  G   EAL LF+EM    V+
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  TMV++ SACA+  ++ LGR+ H+++   G   N+ + NAL+D Y KCG +  A  +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  +  ++ +SW+TL+ G       KEAL LF+EM   G  P EVT + +L AC+H G +
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 362 DEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           D G        KR+K   G+         ++D+  + G ++ A +   +ML   +   W 
Sbjct: 353 DIGRWIHVYIDKRLK---GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSML-NRSLSSWN 408

Query: 418 TLLGACTIHGHS 429
            ++    +HG +
Sbjct: 409 AMIFGFAMHGRA 420


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/518 (43%), Positives = 324/518 (62%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + ++ +WNT++ G AES     A+ L  +M   G KPD+ T   +L   ++ AD
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGAD 188

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           VR G + H  A RNGF   VFV +SL+ MYA       + KVF+ +  RD + WNS++ G
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            A NG  +EAL LFR M   G++P   T  SL  AC  L +L LG++ H YV + G   N
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGN 308

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V ++++L+D Y KCG +  A+R+F  ++  + VSW+ +++G A++G  +EAL LF  ME+
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMEL 368

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
           G   P  +TF+ VL ACSH G+VD+G+ YF  M D YGI+P +EH   + D LGR G ++
Sbjct: 369 GNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLE 428

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +AY +I  M + P A +W TLL AC +H ++ +AE     +  LEP+  G +++LSN Y+
Sbjct: 429 EAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYS 488

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              RW     +R++M K+ ++K P  S +E+ N+   F   D+SHP  E I   L   ++
Sbjct: 489 SSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSE 548

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           ++  +GYVP T++VF DIEEE+K   L  HSEK+AI F +++T PGT +RV+KNLRVC D
Sbjct: 549 QMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVD 608

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K ISK+  REIV+RD +RFHHFKDG CSC D+W
Sbjct: 609 CHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 171/360 (47%), Gaps = 28/360 (7%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVS----GIKPDTHTYPFLLKAISKLADVRMGEQT 165
           +W   IR  A   +   A+ L+ +M  S           + P  LK+ + L    +G   
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 166 HSVAIRNGFESLVFVQNSLVHMY----AAFGH----------VKDACKVFELMSERDLVA 211
           H++A+R+G  +  F  N+L+++Y    A   H          ++   KVF+ M E+D+V+
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN+++ G A +G+  EAL L REM  +G +PD +T+ S+    AE   +  G   H +  
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           + G  D+V V ++L+D Y+ C     + +VF  +  R+A+ W++++ G A NG   EAL 
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALG 260

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMV 388
           LF+ M   G  P  VTF  ++ AC +   +  G    +Y  R     G    +     ++
Sbjct: 261 LFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIR----GGFDGNVFISSSLI 316

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEPKH 446
           D+  + G V  A   I + +  P+ V W  ++    +HG    A+    R  L  L+P H
Sbjct: 317 DMYCKCGNVSIA-RRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNH 375



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           ++H F+ R+G   ++  +G  LI  YA  + +    Y+  +F ++   +   WN+M+ G 
Sbjct: 194 ELHGFATRNGFH-DDVFVGSSLIDMYANCTRT---DYSVKVFDNLPVRDAILWNSMLAGC 249

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A++ +   A+ L+ +M  SGIKP   T+  L+ A   LA + +G+Q H+  IR GF+  V
Sbjct: 250 AQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNV 309

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F+ +SL+ MY   G+V  A ++F+ +   D+V+W ++I G A +G   EAL LF  M   
Sbjct: 310 FISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELG 369

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYSKCGIIIA 297
            ++P+  T +++ +AC+  G +  G +    +    G+  ++  + AL D   + G +  
Sbjct: 370 NLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEE 429

Query: 298 AQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           A      M+ K  A  WSTL+    V+     A E+ K++
Sbjct: 430 AYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKI 469


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/585 (41%), Positives = 359/585 (61%), Gaps = 13/585 (2%)

Query: 36  NPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHG---VPLNNPDLGKYLIYAIVSLSFP 92
           + + S + KC TL      S    KQ+HA     G   +P++ P   K L    +SL   
Sbjct: 3   SSLDSFLSKCTTL------SLPHTKQLHAHLFTTGQFRLPIS-PARSKLLELYALSLG-N 54

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S+A   FS ++ P+   WN +IRG+ +S NP  A   Y  M     K D  T  F+LKA
Sbjct: 55  LSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKA 114

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +++       Q H+  +R GF +   +  +L+ +YA  G +  A KVF+ M +RD+ +W
Sbjct: 115 CARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASW 174

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I+GFA   KP EAL+LF+ M  +G +P+  +++   SACA+LG    G + H Y+  
Sbjct: 175 NALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKV 234

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALE 331
                N  V N ++D Y+KCG +  A  VF  M  +++ V+W+T+++  A++G G +ALE
Sbjct: 235 ERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALE 294

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF++M+  G  P +V+++ VL AC+H G+V+EGF  F  M++  G+ P ++H+G +VDLL
Sbjct: 295 LFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLL 353

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG + +AY+ + +M   P+ V+W+TLLGA   H +  IAE     L+++   H GD+V
Sbjct: 354 GRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFV 413

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+YA  +RW +V  VR  M    VKK PG S +E    + +F+  D+SH    EI+A
Sbjct: 414 LLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYA 473

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L EI  ++K  GYV  T  V  DI EE+KE+ L +HSEK+A+AF L++T+ GTP++V+K
Sbjct: 474 KLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIK 533

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR+C DCH  IKLISK+Y REI+VRDR RFH FK+G CSCRDYW
Sbjct: 534 NLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/527 (43%), Positives = 337/527 (63%), Gaps = 6/527 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +WN MI GY E+     A+EL+ +M  + ++PD  T   ++ A ++
Sbjct: 149 ARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQ 208

Query: 156 LADVRMGEQTHS----VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
              + +G Q HS        +GF S + + N+L+ +Y+  G V+ A  +FE +S +D+V+
Sbjct: 209 SGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVS 268

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I G+       EAL LF+EM   G  P+  T++S+  ACA LGA+ +GR  H Y+ 
Sbjct: 269 WNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYID 328

Query: 272 KV--GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           K   G+++  ++  +L+D Y+KCG I AA +VF  M  R+  SW+ ++ G A++G    A
Sbjct: 329 KKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAA 388

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
            +LF  M      P ++TFVG+L ACSH G++D G   FK M  +Y + PK+EH+GCM+D
Sbjct: 389 FDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMID 448

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLG +GL K+A E I  M M P+ VIW +LL AC  HG+  +AE     L+++EP++SG 
Sbjct: 449 LLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGS 508

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA   RW +V  VR  +  + +KK PG S +E+ + V EF +GD+ HP+  EI
Sbjct: 509 YVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREI 568

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           + ML E+  +L+  G+ P T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +
Sbjct: 569 YHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 628

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLRVC +CH A KLISK+Y REIV RDR+RFHHF+DG CSC DYW
Sbjct: 629 VKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 207/376 (55%), Gaps = 37/376 (9%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA ++F  +Q+PN+  WNTM+RG+A S++P+ A+E+Y +M   G  P+++++PFLLK+
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA--------------C 198
            +K      G Q H+  ++ G     +V  SL+ MYA  G ++DA              C
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 199 -----------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
                            KVF+ ++ERD+V+WN++I G+  NG+  EAL LF+EM    V 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKV----GLSDNVNVNNALLDFYSKCGIIIA 297
           PD  T+VS+ SACA+ G++ LGR+ H++V       G S ++ + NAL+D YSKCG +  
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  +F  +  ++ VSW+TL+ G       KEAL LF+EM   G  P +VT + VL AC+H
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAH 313

Query: 358 CGMVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
            G +D G + +    K   G+  +      ++D+  + G ++ A++   +ML    +  W
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-W 372

Query: 417 RTLLGACTIHGHSAIA 432
             ++    +HG +  A
Sbjct: 373 NAMIFGFAMHGRANAA 388


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/587 (41%), Positives = 359/587 (61%), Gaps = 19/587 (3%)

Query: 30  TPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           TP SQ +   S   + + LLQ C S+  +L+Q+H   ++ G+ L+     K L +     
Sbjct: 7   TPTSQLSS-ESNAAQTLHLLQRC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPN 64

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  ++YA  +F  +  PN F WNTMIRGY+ S  P  A+ LY  M    +  + +T+PFL
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFL 124

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA S ++ +   +Q H+  I+ GF S ++  NSL+++Y+  G +K A  +F+ + +RD 
Sbjct: 125 LKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD- 183

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
                            EAL LF  M + G++ D   +VS   ACA+LG L  G+  H Y
Sbjct: 184 ----------------TEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 227

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + K  +  +  +   L+D Y+KCG +  A  VFR+M ++    W+ ++ G A++G G+EA
Sbjct: 228 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 287

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE F +M+  G  P ++TF G+L ACSH G+V E    F+ M+  +G  P IEH+GCMVD
Sbjct: 288 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 347

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAGL+K+A E I+NM + PNA IW  LL AC IHG+  + +     L+Q++P H G 
Sbjct: 348 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 407

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           Y+ L++++A    W     VRR M ++ V K PG S++ +     EF  GD SHPQ +EI
Sbjct: 408 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 467

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
             ML +I ++L+ EGY P+  ++  D+E++EKE A+ +HSEK+A+ F L++T PG  +R+
Sbjct: 468 DHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRI 527

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLRVC DCH  IKLISKVY+REI++RDR+RFH FKDG+C+C DYW
Sbjct: 528 VKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/558 (42%), Positives = 343/558 (61%), Gaps = 5/558 (0%)

Query: 60  KQVHAFSIRHG-VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           K +H ++IR G   L N       +Y   S    +  A  IF  +    + +WN+M+ GY
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMY---SKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++  P  A+ ++ KM   GI P   T    L A + L D+  G+  H    +    S +
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V NSL+ MY+    V  A  +F  ++ R  V+WN++I G+A NG+ +EAL  F EM S 
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++PD +TMVS+  A AEL      +  H  + +  L  N+ V  AL+D YSKCG I  A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +++F  +  R+ ++W+ ++ G   +G G+ AL+LF +M+ G   P ++T++ V+ ACSH 
Sbjct: 505 RKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHS 564

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+VDEG  +FK MK +YG+ P ++H+G MVDLLGRAG +K+A+++I+NM + P   ++  
Sbjct: 565 GLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGA 624

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           +LGAC IH +  + E A   L +L P   G +VLL+N+YA   +W  V EVR+TM K+ +
Sbjct: 625 MLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL 684

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KKTPG S+VEL N V  F+ G  +HPQ++ I+A L E+  ++K  GYVP T N+  D+E+
Sbjct: 685 KKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVED 743

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           + +E  L+ HSEK+AIAF L+NT+PGT + V KNLRVC DCH A K IS V  REI+VRD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHFK+G CSC DYW
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 196/360 (54%), Gaps = 4/360 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LL++C S K +L Q+    I++G  L N  L +  + ++ S    ++ A  +F  + D  
Sbjct: 55  LLELCTSMK-ELHQIIPLVIKNG--LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              ++TM++GYA++++   A+    +M    +KP  + + +LLK     AD++ G++ H 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             I N F + VF    +V+MYA    + DA K+F+ M ERDLV+WN++I GF+ NG   +
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL L   M  EG  PD  T+V++  A A++G L +G+  H Y  + G +  VN++ AL D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A+ +F  M ++  VSW++++ G   NG  ++A+ +F++M   G  P  VT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            +  L+AC+  G ++ G  +  +  D+  +   I     ++ +  +   V  A +   N+
Sbjct: 352 IMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/599 (39%), Positives = 362/599 (60%), Gaps = 14/599 (2%)

Query: 23  VKSLYHSTPAS--QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
           +K  +HS   S  +  P+ S+++ C        + K +L Q+HA  I     + +P +  
Sbjct: 13  LKYHHHSISFSHFEREPLISLIKSC--------THKSQLLQIHAHIITTS-SIQDPIVSL 63

Query: 81  YLIYAIVSLSF-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
             +    S  F  + Y+  +F  + +P +  +N M+R Y+ S +PL  + +Y  M   G+
Sbjct: 64  RFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGV 123

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           + D  +  F +K+  KL  +  G Q H+    NG ++   +  S++ +Y+  G  ++ACK
Sbjct: 124 RADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACK 183

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAEL 257
           +F+ + ++D+VAWN +I+    N +  +AL LF  M S     +PD  T + L  ACA+L
Sbjct: 184 LFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADL 243

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            AL  G R H Y+ + G +   N+ N+L+  YS+CG +  A  VF +M ++N VSWS ++
Sbjct: 244 NALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMI 303

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            GL++NG G+EA+E F EM+  G  PG+ TF  VL ACSHCG+VDEG ++F RM+ E+ I
Sbjct: 304 SGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMI 363

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P + H+GC+VDLLGRAG++ QAYE I +M + P+A +WRTLLGAC IHGH  + E    
Sbjct: 364 APNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVE 423

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L++L+ + +GDYVLL N+Y+    W  V E+R+ M ++ +  TP  + +EL   V +F 
Sbjct: 424 HLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFA 483

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
           + D SHP  ++I+  L EI K+LK+ GY     +    +E ++K  ALS HSEK+AIAF 
Sbjct: 484 VDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFG 543

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++ T PG  +R+  N+R C DCH   K IS VY+R++VVRDRSRFHHF++G CSC D+W
Sbjct: 544 VLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/531 (44%), Positives = 341/531 (64%), Gaps = 8/531 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTW-NTMIRGYAESANPLLA-----VELYSKMHVSGIKPDTHTY 146
           ++YA  +F  V  P+   W NT++RGYA S++   +     V ++ +M   G+ PDT+T+
Sbjct: 77  LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTF 136

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             LLKA +       G Q H+VA++ G     +V+ +L++MYA  G  + A   F     
Sbjct: 137 VSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADG 196

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
             +V++N++I     + +P EAL LFREM ++G+ P   T++S+ SACA LGAL LGR  
Sbjct: 197 DCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWL 256

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H YV K+GL   V V+ AL+D Y+KCG +  A  VF+ M  R+  +WS ++V  A +G+G
Sbjct: 257 HDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYG 316

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA+ LF+EM+  G  P ++TF+G+LYACSH G+V EG  YF  MKD +GI+P I+H+GC
Sbjct: 317 REAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKD-HGIVPGIKHYGC 375

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           + DLL R+G +++AY++I  + + P  ++WRTLL AC  HG   + +     +L+L+  H
Sbjct: 376 VTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSH 435

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            GDYV+ SNL A    W  +  VR+ M  + V K PG S +E+ N V EFF GD  HP++
Sbjct: 436 GGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKS 495

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           +E   M+ E+  +LKL GY+P T +VF  ++ EEEK  +L YHSEK+AIAF L+NTAPG 
Sbjct: 496 QEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGA 555

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +RVVKNLRVC DCH   K +S V++R I++RD +RFHHF+ G CSC DYW
Sbjct: 556 TLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/609 (42%), Positives = 371/609 (60%), Gaps = 22/609 (3%)

Query: 28  HSTPASQENPITSVV--RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           H  PAS  +  T+    ++  +L + C S   +LKQ+HAF++R   P     L  Y    
Sbjct: 32  HIPPASSPSASTAGNHHQRIFSLAETC-SDMSQLKQLHAFTLRTTYPEEPATLFLYGKIL 90

Query: 86  IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPD 142
            +S SF  ++YA  +F  +++ + F WNT+IR  A + +    A  LY KM   G   PD
Sbjct: 91  QLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPD 150

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            HT+PF+LKA + +     G+Q H   +++GF   V+V N L+H+Y + G +  A KVF+
Sbjct: 151 KHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFD 210

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M ER LV+WNS+I+     G+ + AL LFREM     EPDGYTM S+ SACA LG+L+L
Sbjct: 211 EMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 269

Query: 263 GRRAHTYVWK---VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           G  AH ++ +   V ++ +V V N+L++ Y KCG +  A++VF+ M+KR+  SW+ +++G
Sbjct: 270 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 329

Query: 320 LAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            A +G  +EA+  F  M  +     P  VTFVG+L AC+H G V++G  YF  M  +Y I
Sbjct: 330 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCI 389

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIA 435
            P +EH+GC+VDL+ RAG + +A + + +M M P+AVIWR+LL AC   G S     EIA
Sbjct: 390 EPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 449

Query: 436 RSTLLQLEPKHS------GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
           R+ +   E   S      G YVLLS +YA   RW +V  VR+ M +  ++K PG S +E+
Sbjct: 450 RNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEI 509

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP-RTENVFADIEEE-EKEDALSY 547
                EFF GD SHPQT++I+  L  I  +L+  GY+P R++    D   +  KE +L  
Sbjct: 510 NGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRL 569

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSE++AIAF L+N  P TP+R+ KNLRVC DCH   KLISKV++ EI+VRDR RFHHFKD
Sbjct: 570 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKD 629

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 630 GSCSCLDYW 638


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/627 (41%), Positives = 353/627 (56%), Gaps = 71/627 (11%)

Query: 59  LKQVHA-FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           LK++H+   I H +  +NP LG  L+ A      P S  H IF  +   N+  +N MIR 
Sbjct: 54  LKKLHSKICIDHDLH-SNPSLGIKLMRAYAVCGEPWSTRH-IFDEIPKKNVVFFNVMIRS 111

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           Y  +     A+ ++  M   GI PD +TYP +LKA S   D+ +G Q H+  +R G +  
Sbjct: 112 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 171

Query: 178 VFVQN-------------------------------SLVHMYAAFGHVKDA---CKVFEL 203
           VFV N                               SLV   A  G   DA   CK  EL
Sbjct: 172 VFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMEL 231

Query: 204 M----------------------------------SERDLVAWNSVINGFASNGKPNEAL 229
           +                                  + + LV+WN +I  + +N  P EA+
Sbjct: 232 LGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAV 291

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            +F +M    V+PD  ++ S+  AC +L AL LGRR H YV +  L  N+ + NAL+D Y
Sbjct: 292 DIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMY 351

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG +  A+ VF +M+ R+ VSW++++    +NG G++A+ LF  M+  G  P  + FV
Sbjct: 352 AKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFV 411

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            VL ACSH G++DEG  YFK M +E  I+P+IEHF CMVDLLGRAG V +AY +I+ M M
Sbjct: 412 SVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPM 471

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            PN  +W  LL AC ++ +  I  +A   L QL P+ SG YVLLSN+YA   RW +V  V
Sbjct: 472 EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTV 531

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R  M  + +KK PG S  EL NRV  F  GD+SHPQ+++I+  L     K+K  GYVP T
Sbjct: 532 RSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPET 591

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
           ++   D+EEE+KE  L+ HSEK+AIAF ++NTAPG+P+R+ KNLRVC DCH+A KLISK+
Sbjct: 592 DSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKI 651

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
             REI +RD +RFHHF +G CSC DYW
Sbjct: 652 VGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/587 (41%), Positives = 360/587 (61%), Gaps = 22/587 (3%)

Query: 42  VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHN 98
           ++ C  LL +     H  +Q H  ++  G     PDL  ++  A+V +      +  A  
Sbjct: 159 IKSCSALLDL-----HSGRQAHQQALIFGF---EPDL--FVSSALVDMYSKCGELRDART 208

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGIKPDTHTY--PF----LL 150
           +F  +   NI +W +MI GY ++ +   A+ L+ +  V  SG + D      P     +L
Sbjct: 209 LFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVL 268

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A S++++  + E  H   I+ GFE  + V+N+L+  YA  G +  + +VF+ M+ERD++
Sbjct: 269 SACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVI 328

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTY 269
           +WNS+I  +A NG   E++ +F  M  +G +  +  T+ ++  ACA  G+  LG+  H  
Sbjct: 329 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQ 388

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V K+GL  NV V  +++D Y KCG +  A++ F  MR++N  SWS +V G  ++G  KEA
Sbjct: 389 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 448

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE+F EM + G  P  +TFV VL ACSH G+++EG+ +FK M  E+ + P +EH+GCMVD
Sbjct: 449 LEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVD 508

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG +K+A++ I+ M + P+ V+W  LLGAC +H +  + EI+   L +L+PK+ G 
Sbjct: 509 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGY 568

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA   RW +V+ +R  M    + K PG SLV++  RV  F +GDR HPQ E+I
Sbjct: 569 YVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKI 628

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L +++ KL+  GYVP   +V  D+  EEKE  L  HSEK+A+AF ++NT PGT + +
Sbjct: 629 YEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHI 688

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLRVC DCH AIK ISK+  REIVVRD  RFHHF+DG CSC DYW
Sbjct: 689 IKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 181/343 (52%), Gaps = 17/343 (4%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   N+F+WN++I   A S + + A+  +S M    +KP+  T+P  +K+ S L D+  
Sbjct: 111 YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 170

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G Q H  A+  GFE  +FV ++LV MY+  G ++DA  +F+ +S R++V+W S+I G+  
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230

Query: 222 NGKPNEALTLFREMASE--GVEPDG------YTMVSLFSACAELGALALGRRAHTYVWKV 273
           N   + AL LF+E   E  G E DG        MVS+ SAC+ +   ++    H ++ K 
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR 290

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G   ++ V N L+D Y+KCG +  ++RVF  M +R+ +SW++++   A NG   E++E+F
Sbjct: 291 GFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIF 350

Query: 334 KEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE---YGIMPKIEHFGCMVD 389
             M   G +    VT   VL AC+H G    G    K + D+    G+   +     ++D
Sbjct: 351 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLG----KCIHDQVIKMGLESNVFVGTSIID 406

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +  + G V+ A +    M    N   W  ++    +HGH+  A
Sbjct: 407 MYCKCGKVEMARKAFDRM-REKNVKSWSAMVAGYGMHGHAKEA 448


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/523 (43%), Positives = 330/523 (63%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  +   ++ +WN MI GY E+ N   A+EL+ +M  + ++PD  T   ++ A ++
Sbjct: 148 ARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASAR 207

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF S + + N+L+  Y+  G ++ AC +F  +S +D+++WN +
Sbjct: 208 SGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNIL 267

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 268 IGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLK 327

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D YSKCG I AA +VF  M  ++  +W+ ++ G A++G    A ++F
Sbjct: 328 GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIF 387

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M      P ++TFVG+L ACSH GM+D G   F+ M   Y I PK+EH+GCM+DLLG 
Sbjct: 388 SRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGH 447

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I  M M P+ VIW +LL AC +HG+  + E     L ++EP + G YVLL
Sbjct: 448 SGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLL 507

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V  +R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 508 SNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 567

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T P T + +VKNL
Sbjct: 568 EEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNL 627

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 628 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/565 (43%), Positives = 338/565 (59%), Gaps = 39/565 (6%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV--QDPNIFTW 111
           +S  +L+QVHA  I+   PL+   L +  +    + SF   YA  IF  V  Q P  F W
Sbjct: 72  NSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSF--HYAQQIFKCVEKQKPETFVW 129

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N+ ++  AE  +P+ A+ L+ ++    + PDT T   +L+A   L D+  G   H V  +
Sbjct: 130 NSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK 189

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF S                                   W S+I G+   GK  EA+ L
Sbjct: 190 VGFRS-----------------------------------WTSMIAGYVQCGKAKEAIHL 214

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F +M   GV+ +  T+V++ +ACA+LGAL LG R H Y  + G   NV ++N L+D Y K
Sbjct: 215 FAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVK 274

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A +VF EM +R  VSWS ++ GLA++G  +EAL LF +M   G  P  VTF+G+
Sbjct: 275 CGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGL 334

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L+ACSH G++ EG  +F  M  +YGI+P+IEH+GCMVDLL RAGL+ +A+E+I NM M P
Sbjct: 335 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKP 394

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           N V+W  LLGAC +H +  +AE A   LL+L+P + G YV+LSN+YA   RW +   VR+
Sbjct: 395 NGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRK 454

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M   +VKKTPG S + +   V EF  G+ SHP TE+I     E+ ++++L+GYVP T  
Sbjct: 455 FMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSV 514

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  DIEE EK   +S HSEK+A+ F L+NT   TP+R++KNLR+C DCH A KLIS + +
Sbjct: 515 VLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVN 574

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REIVVRDR+RFH F D  CSCRDYW
Sbjct: 575 REIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/615 (40%), Positives = 352/615 (57%), Gaps = 20/615 (3%)

Query: 21  CRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHG-------- 70
           C   SL+    AS   P +SV       L+ CA+         +HA +IR G        
Sbjct: 30  CDAVSLFLRMRASAA-PRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTA 88

Query: 71  ---------VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
                    VP +  D     I  +   S        +F  + + ++ +WNT++ G AE 
Sbjct: 89  NALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEE 148

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A+    KM   G +PD+ T   +L   ++ ADV+ G + H  A RNGF+S VFV 
Sbjct: 149 GRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVG 208

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           +SL+ MYA       + KVF+ +  RD + WNS++ G A NG   EAL +FR M   GV 
Sbjct: 209 SSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVR 268

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P   T  SL   C  L +L  G++ H YV   G  DNV ++++L+D Y KCG I  A  +
Sbjct: 269 PVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCI 328

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F +M   + VSW+ +++G A++G  +EAL LF+ ME+G   P  +TF+ VL ACSH G+V
Sbjct: 329 FDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLV 388

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           D+G+ YFK M + YGI+P +EHF  + D LGRAG + +AY +I  M + P A +W TLL 
Sbjct: 389 DKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLR 448

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC +H ++ +AE     +++LEP+  G +V+LSN+Y+   RW     +R +M K+ +KK 
Sbjct: 449 ACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKD 508

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
           P  S +E+ +++  F   DRSHP  + I   L   ++++  EG+VP TE+VF DIEEE K
Sbjct: 509 PACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHK 568

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
              L  HSEK+AI F +++T  GT +RV+KNLRVC DCH   K ISK+  REIVVRD +R
Sbjct: 569 SYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANR 628

Query: 602 FHHFKDGHCSCRDYW 616
           FHHFKDG+CSC D+W
Sbjct: 629 FHHFKDGNCSCGDFW 643


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/562 (40%), Positives = 340/562 (60%), Gaps = 12/562 (2%)

Query: 60  KQVHAFSIRHG-----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           K +H++SI+       V  NN  L  Y      S    ++ A  +F  + +  + +W +M
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMY------SKCGDLNSAIRVFERMDEKTVVSWTSM 425

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I GY        A++L+ +M   G+ PD +    +L A +   +++ G+  H     N  
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           E+  FV N+L  MYA  G +KDA  VF  M ++D+++WN++I G+  N  PNEALTLF E
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAE 545

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  E  +PDG T+  +  ACA L AL  GR  H Y  + G S++  V NA++D Y KCG+
Sbjct: 546 MQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGL 604

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           ++ A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F +M + G  P EV+F+ +LYA
Sbjct: 605 LVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYA 664

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G++DEG+  F  MK E  I P +EH+ CMVDLL R G + +A+++I+ M + P+A 
Sbjct: 665 CSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDAT 724

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           IW  LL  C IH    +AE     + +LEP+++G YVLL+N+YA  ++W  VQ++R+ + 
Sbjct: 725 IWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIG 784

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
           +  +KK PG S +E+  ++  F  GD S PQ ++I  +L  +  K+K EGY P+T     
Sbjct: 785 QRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALL 844

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           + +E EKE AL  HSEK+A+AF ++N  PG  +RV KNLRVC DCH   K +SK  SREI
Sbjct: 845 NADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREI 904

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD SRFHHFKDG CSCR YW
Sbjct: 905 ILRDSSRFHHFKDGSCSCRGYW 926



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/381 (31%), Positives = 200/381 (52%), Gaps = 7/381 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++LQ+CA  K     ++V +     GV ++   LG  L++  V     +     +F  + 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGI-LGVKLVFMYVKCG-DLKEGRMVFDKLS 212

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +  IF WN MI  Y+ S N   ++ L+ +M   GIKP+++T+  +LK  + +A V  G Q
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H +  + GF S   V NSL+  Y     V+ A K+F+ +++RD+++WNS+I+G+  NG 
Sbjct: 273 VHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNN 283
            +  + +F +M   GV+ D  TMV++F ACA +G L LG+  H+Y  K    D  V  NN
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            LLD YSKCG + +A RVF  M ++  VSW++++ G    G    A++LF EM+  G VP
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP 452

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
                  +L AC+  G +  G      ++ E  +         + D+  + G +K A++ 
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIR-ENNLETNSFVSNALTDMYAKCGSMKDAHDV 511

Query: 404 IQNMLMPPNAVIWRTLLGACT 424
             +M    + + W T++G  T
Sbjct: 512 FSHM-KKKDVISWNTMIGGYT 531


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/558 (42%), Positives = 346/558 (62%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA S++     N   L   L +YA   L   +  A  +F  +  P+  +W  +I  Y
Sbjct: 138 EQLHARSLKLPSHTNPHVLTSLLTLYARCGL---LHRAQRVFDEMPHPSTVSWTALITAY 194

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++ +   AV +      +G++PD+ T   +L A +++AD+  GE     A + G    V
Sbjct: 195 MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSV 254

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  + V +Y   G +  A +VF+ M ++D VAW +++ G+ASNG P EAL LF  M +E
Sbjct: 255 FVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAE 314

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV PD Y +    SAC  LGAL LGR+A   V      DN  +  AL+D Y+KCG    A
Sbjct: 315 GVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEA 374

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VF++MRK++ + W+ +++GL + G  K A  L  +ME  G    + TF+G+L +C+H 
Sbjct: 375 WVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHT 434

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G++ +G  YF  M   Y I P+IEH+GC+VDLL RAGL+++A++ I +M MP NAVI   
Sbjct: 435 GLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGA 494

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG C IH ++ +AE   + L++LEP +SG+YV+LSN+Y+   RW +  ++R  M ++ V
Sbjct: 495 LLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGV 554

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K P  S VE   +V EF +GD+SHP +++I+  L E+  ++K  GY P TE V  D+E+
Sbjct: 555 EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 614

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEKE  L +HSEK+AIAF L+ T PG  +RV KNLRVC+DCH AIKLIS++  REI+VRD
Sbjct: 615 EEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRD 674

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFH F+DG CSC DYW
Sbjct: 675 NNRFHCFRDGSCSCNDYW 692



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 5/302 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++H     P   T+P  LK+ S+L   +R GEQ H+ +++    +   V  SL+ +YA  
Sbjct: 107 RLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC 166

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +  A +VF+ M     V+W ++I  +   G   EA+ + R   + G+ PD +T V + 
Sbjct: 167 GLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 226

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +ACA +  LA G        + G++ +V V  A +D Y KCG +  A+ VF +MR ++AV
Sbjct: 227 TACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAV 286

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W  +V G A NG  +EAL+LF  M+  G  P      G L AC+  G +D G    + +
Sbjct: 287 AWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMV 346

Query: 372 K-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
             DE+   P +     ++D+  + G   +A+   Q M    + ++W  ++    + GH  
Sbjct: 347 DWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM-RKKDIIVWNAMILGLGMTGHEK 403

Query: 431 IA 432
            A
Sbjct: 404 TA 405


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 352/584 (60%), Gaps = 13/584 (2%)

Query: 36  NPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS---FP 92
           N   SV++ C  ++ +        + VH F +R G+     D   Y   A++++      
Sbjct: 106 NVFPSVLKSCTMMMDLRFG-----ESVHGFIVRLGM-----DCDLYTGNALMNMYSKLLG 155

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +     +F  +   ++ ++NT+I GYA+S     A+ +  +M  S +KPD  T   +L  
Sbjct: 156 IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPI 215

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S+  DV  G++ H   IR G +S V++ +SLV MYA    ++D+ +VF  +  RD ++W
Sbjct: 216 FSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISW 275

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS++ G+  NG+ NEAL LFR+M S  V P      S+  ACA L  L LG++ H YV +
Sbjct: 276 NSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 335

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   N+ + +AL+D YSKCG I AA+++F  M   + VSW+ +++G A++G G EA+ L
Sbjct: 336 GGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSL 395

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM+  G  P +V FV VL ACSH G+VDE + YF  M   YG+  ++EH+  + DLLG
Sbjct: 396 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 455

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +++AY++I  M + P   +W TLL +C++H +  +AE     +  ++ ++ G YVL
Sbjct: 456 RAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVL 515

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           + N+YA   RW  + ++R  + K+ ++K P  S +E+ N+   F  GDRSHP  + I+  
Sbjct: 516 MCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEF 575

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L  + ++++ EGYV  T  V  D++EE K + L  HSE++A+AF ++NT PGT +RV KN
Sbjct: 576 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 635

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+C DCH+AIK ISK+  REI+VRD SRFHHF  G CSC DYW
Sbjct: 636 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 196/380 (51%), Gaps = 17/380 (4%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFSHVQDPNIFTW 111
           SK + KQ+HA  IR         L       ++S+   +   H    +F  ++ P +  W
Sbjct: 20  SKSQAKQLHAQFIR------TQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAW 73

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            ++IR + + +    A+  + +M  SG  PD + +P +LK+ + + D+R GE  H   +R
Sbjct: 74  KSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR 133

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            G +  ++  N+L++MY+    +    KVFELM  +D+V++N+VI G+A +G   +AL +
Sbjct: 134 LGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRM 193

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
            REM +  ++PD +T+ S+    +E   +  G+  H YV + G+  +V + ++L+D Y+K
Sbjct: 194 VREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK 253

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
              I  ++RVF  + +R+++SW++LV G   NG   EAL LF++M      PG V F  V
Sbjct: 254 SARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSV 313

Query: 352 LYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           + AC+H   +  G     Y  R     G    I     +VD+  + G ++ A +    M 
Sbjct: 314 IPACAHLATLHLGKQLHGYVLRG----GFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 409 MPPNAVIWRTLLGACTIHGH 428
           +  + V W  ++    +HGH
Sbjct: 370 L-HDEVSWTAIIMGHALHGH 388


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/609 (42%), Positives = 371/609 (60%), Gaps = 22/609 (3%)

Query: 28  HSTPASQENPITSVV--RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           H  PAS  +  T+    ++  +L + C S   +LKQ+HAF++R   P     L  Y    
Sbjct: 23  HIPPASSPSASTAGNHHQRIFSLAETC-SDMSQLKQLHAFTLRTTYPEEPATLFLYGKIL 81

Query: 86  IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPD 142
            +S SF  ++YA  +F  +++ + F WNT+IR  A + +    A  LY KM   G   PD
Sbjct: 82  QLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPD 141

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            HT+PF+LKA + +     G+Q H   +++GF   V+V N L+H+Y + G +  A KVF+
Sbjct: 142 KHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFD 201

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M ER LV+WNS+I+     G+ + AL LFREM     EPDGYTM S+ SACA LG+L+L
Sbjct: 202 EMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 260

Query: 263 GRRAHTYVWK---VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           G  AH ++ +   V ++ +V V N+L++ Y KCG +  A++VF+ M+KR+  SW+ +++G
Sbjct: 261 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 320

Query: 320 LAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            A +G  +EA+  F  M  +     P  VTFVG+L AC+H G V++G  YF  M  +Y I
Sbjct: 321 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCI 380

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIA 435
            P +EH+GC+VDL+ RAG + +A + + +M M P+AVIWR+LL AC   G S     EIA
Sbjct: 381 EPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 440

Query: 436 RSTLLQLEPKHS------GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
           R+ +   E   S      G YVLLS +YA   RW +V  VR+ M +  ++K PG S +E+
Sbjct: 441 RNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEI 500

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP-RTENVFADIEEE-EKEDALSY 547
                EFF GD SHPQT++I+  L  I  +L+  GY+P R++    D   +  KE +L  
Sbjct: 501 NGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRL 560

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSE++AIAF L+N  P TP+R+ KNLRVC DCH   KLISKV++ EI+VRDR RFHHFKD
Sbjct: 561 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKD 620

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 621 GSCSCLDYW 629


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/558 (42%), Positives = 346/558 (62%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA S++     N   L   L +YA   L   +  A  +F  +  P+  +W  +I  Y
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLTLYARCGL---LHRAQRVFDEMPHPSTVSWTALITAY 147

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++ +   AV +      +G++PD+ T   +L A +++AD+  GE     A + G    V
Sbjct: 148 MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSV 207

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  + V +Y   G +  A +VF+ M ++D VAW +++ G+ASNG P EAL LF  M +E
Sbjct: 208 FVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAE 267

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV PD Y +    SAC  LGAL LGR+A   V      DN  +  AL+D Y+KCG    A
Sbjct: 268 GVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEA 327

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VF++MRK++ + W+ +++GL + G  K A  L  +ME  G    + TF+G+L +C+H 
Sbjct: 328 WVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHT 387

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G++ +G  YF  M   Y I P+IEH+GC+VDLL RAGL+++A++ I +M MP NAVI   
Sbjct: 388 GLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGA 447

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG C IH ++ +AE   + L++LEP +SG+YV+LSN+Y+   RW +  ++R  M ++ V
Sbjct: 448 LLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGV 507

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K P  S VE   +V EF +GD+SHP +++I+  L E+  ++K  GY P TE V  D+E+
Sbjct: 508 EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 567

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEKE  L +HSEK+AIAF L+ T PG  +RV KNLRVC+DCH AIKLIS++  REI+VRD
Sbjct: 568 EEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRD 627

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFH F+DG CSC DYW
Sbjct: 628 NNRFHCFRDGSCSCNDYW 645



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 5/302 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++H     P   T+P  LK+ S+L   +R GEQ H+ +++    +   V  SL+ +YA  
Sbjct: 60  RLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC 119

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +  A +VF+ M     V+W ++I  +   G   EA+ + R   + G+ PD +T V + 
Sbjct: 120 GLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 179

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +ACA +  LA G        + G++ +V V  A +D Y KCG +  A+ VF +MR ++AV
Sbjct: 180 TACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAV 239

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W  +V G A NG  +EAL+LF  M+  G  P      G L AC+  G +D G    + +
Sbjct: 240 AWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMV 299

Query: 372 K-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
             DE+   P +     ++D+  + G   +A+   Q M    + ++W  ++    + GH  
Sbjct: 300 DWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM-RKKDIIVWNAMILGLGMTGHEK 356

Query: 431 IA 432
            A
Sbjct: 357 TA 358


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/592 (43%), Positives = 364/592 (61%), Gaps = 20/592 (3%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFS 101
           ++  +L + C S   +LKQ+HAF++R   P     L  Y     +S SF  ++YA  +F 
Sbjct: 106 QRIFSLAETC-SDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 164

Query: 102 HVQDPNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADV 159
            +++ + F WNT+IR  A + +    A  LY KM   G   PD HT+PF+LKA + +   
Sbjct: 165 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 224

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+Q H   +++GF   V+V N L+H+Y + G +  A KVF+ M ER LV+WNS+I+  
Sbjct: 225 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 284

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK---VGLS 276
              G+ + AL LFREM     EPDGYTM S+ SACA LG+L+LG  AH ++ +   V ++
Sbjct: 285 VRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 343

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +V V N+L++ Y KCG +  A++VF+ M+KR+  SW+ +++G A +G  +EA+  F  M
Sbjct: 344 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 403

Query: 337 --EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
             +     P  VTFVG+L AC+H G V++G  YF  M  +Y I P +EH+GC+VDL+ RA
Sbjct: 404 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 463

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIARSTLLQLEPKHS----- 447
           G + +A + + +M M P+AVIWR+LL AC   G S     EIAR+ +   E   S     
Sbjct: 464 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 523

Query: 448 -GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            G YVLLS +YA   RW +V  VR+ M +  ++K PG S +E+     EFF GD SHPQT
Sbjct: 524 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQT 583

Query: 507 EEIHAMLAEITKKLKLEGYVP-RTENVFADIEEE-EKEDALSYHSEKIAIAFMLVNTAPG 564
           ++I+  L  I  +L+  GY+P R++    D   +  KE +L  HSE++AIAF L+N  P 
Sbjct: 584 KQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQ 643

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           TP+R+ KNLRVC DCH   KLISKV++ EI+VRDR RFHHFKDG CSC DYW
Sbjct: 644 TPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/510 (44%), Positives = 326/510 (63%), Gaps = 31/510 (6%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+KP+  T   ++KA + +A +  G+Q H+  I+ GFES V VQ +LVHMYA  G ++DA
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 198 CKVFEL-------------------------------MSERDLVAWNSVINGFASNGKPN 226
             VF+                                MSERD+V+W +VI G+A NG  +
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           E+L +F +M   G++ D + M S+ SACA+L AL LGR+ H YV + G + ++ V +AL+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D Y+K G +  A +VF +M +RN VSW++++ G A +G G +A+ LF++M   G  P E+
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           +FVGVL ACSH G+V+EG  YF  M   YGI+P + H+ CM+DLLGRAG + +A  +I  
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+  +W  LLGAC IHG++ +A+     LL +E + +G YVLLSN+YA   +W + 
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDA 364

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
            +VR+ M    V K PG+S +E+   +  F  G+ SHPQ +EIH  L  +++K+K  GYV
Sbjct: 365 AKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYV 424

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P    V  D+E++EKE +LS+HSEK+AIAF ++NT PGT +RV KNLRVC DCH  IK I
Sbjct: 425 PNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFI 484

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           S  ++R+IVVRD +RFHHFKDG CSC DYW
Sbjct: 485 SLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + + ++ +W  +I GYA++     ++ ++++M  +G+K D      +L A
Sbjct: 92  MKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSA 151

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + LA + +G Q H+  +++GF   + V ++LV MYA  G ++DAC+VF+ M +R+ V+W
Sbjct: 152 CADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSW 211

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I G A +G+ N+A+ LF +M   G++P+  + V + SAC+  G +  GR     + +
Sbjct: 212 NSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQ 271

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLAVNG---FGK 327
             G+  +V+    ++D   + G +  A+     M     VS W  L+    ++G     K
Sbjct: 272 NYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAK 331

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
              E    ME+   + G    +  +YA +  G  D+     K MKD  G+M +
Sbjct: 332 RIAEHLLGMEVQ--IAGIYVLLSNIYAAA--GQWDDAAKVRKLMKDR-GVMKQ 379



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 33/238 (13%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  +GV+P+ +T+ ++  ACA + +L  G++AH Y+ K+G   +V V  AL+  Y++CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 295 IIAAQRVF---------------------REMRK----------RNAVSWSTLVVGLAVN 323
           +  A  VF                     R+M+K          R+ VSW+ ++ G A N
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G+G E+L +F +M   G          VL AC+    ++ G   F     + G    I  
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAYVVQSGFALDIVV 179

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
              +VD+  ++G ++ A +    M    N V W +++  C  HG    A +    +LQ
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKM-PQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 352/557 (63%), Gaps = 5/557 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++H + I+     +   L   L+  + +    +SYA  +FS +  P+   +NT+IR ++ 
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR 65

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
              P  ++  +  M  +GI  D  T+PF+LKA S+L   ++    HS+ ++ G  S +FV
Sbjct: 66  FF-PSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRL---QINLHLHSLIVKYGLGSDIFV 121

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG- 239
           QN+L+ +Y   G ++ A KVF+ MSERD V+W++VI  F +NG  +EAL LF +M  E  
Sbjct: 122 QNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDK 181

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V PD  TM+S+ SA + LG L LGR    ++ ++G   +V +  AL+D +S+CG I  + 
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESI 241

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF +M  RN ++W+ L+ GL ++G   EAL +F  M   G  P  VTF GVL ACSH G
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGG 301

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG+  F+ ++  YG+ P ++H+GCMVD+LGRAGL+ +AY++++ M M PN++IWRTL
Sbjct: 302 LVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTL 361

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE  ++ + ++    +GD VLLSN+Y    RW+    +R  M ++R+ 
Sbjct: 362 LGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIG 421

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S + +   + EF  GD SHPQ+E+I   L+ I   L+  GY+ +T+NV  DIEEE
Sbjct: 422 KEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEE 481

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           E+E +LSYHSEK+A+AF +++      +R++KNLR+C DCH  +K IS  + R+I++RDR
Sbjct: 482 EREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDR 541

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF+ G CSC DYW
Sbjct: 542 NRFHHFEKGLCSCHDYW 558


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/520 (44%), Positives = 331/520 (63%), Gaps = 2/520 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   ++ +WN MI GYAE      A+EL+++M    +KPD  T   +L  
Sbjct: 160 MDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLST 219

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   +V +G Q HS    +GF S + + N+L+ +Y+  G ++ A  +FE +  +D+++W
Sbjct: 220 CTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISW 279

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+A      EAL +F+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K
Sbjct: 280 NTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 339

Query: 273 V--GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G+  N ++  +L+D Y+KCG I AA +VF  +  ++  S + ++ G A++G    A 
Sbjct: 340 KLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAF 399

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +L   M+  G  P ++TFVG+L ACSH G+ D G   FK M  +Y I PK+EH+GCM+DL
Sbjct: 400 DLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDL 459

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGR+GL K+A E I +M M P+ VIW +LL AC IH +  + E+    L+++EPK+ G Y
Sbjct: 460 LGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSY 519

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA   RW +V  VR  +  + +KK PG S +E+ + V EF +GD+ HPQ +EI+
Sbjct: 520 VLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIY 579

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML EI   L   G+V  T  V  ++EEE KE ALSYHSEK+AIAF L++T PGT +R+V
Sbjct: 580 KMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIV 639

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           KNLRVC +CH A KLISK+Y REI+ RDRSRFHHFKDG C
Sbjct: 640 KNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 353/557 (63%), Gaps = 5/557 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++H + I+     +   L   L+  + +    +SYA  +FS +  P+   +NT+IR ++ 
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR 65

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
              P  ++  +  M  +GI  D  T+PF+LKA S+L   ++    HS+ ++ G +S +FV
Sbjct: 66  FF-PSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRL---QINLHLHSLIVKYGLDSDIFV 121

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG- 239
           QN+L+ +Y   G ++ A KVF+ MSERD V+W++VI  F +NG  +EAL LF +M  E  
Sbjct: 122 QNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDK 181

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V PD  TM+S+ SA + LG L LGR    ++ ++GL  +V +  AL+D +S+CG I  + 
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESI 241

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF +M  RN ++W+ L+ GL V+G   EAL +F  M   G  P  VTF GVL ACSH G
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGG 301

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG+  F+ ++  Y + P ++H+GCMVD+LGRAGL+ +AY++++ M M PN++IWRTL
Sbjct: 302 LVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTL 361

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE  ++ + ++    +GD VLLSN+Y    RW+    +R  M ++R+ 
Sbjct: 362 LGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIG 421

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S + +   + EF  GD SHPQ+E+I   L+ I   L+  GY+ +T+NV  DIEEE
Sbjct: 422 KEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEE 481

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           E+E +LSYHSEK+A+AF +++      +R++KNLR+C DCH  +K IS  + R+I++RDR
Sbjct: 482 EREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDR 541

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF+ G CSC DYW
Sbjct: 542 NRFHHFEKGLCSCHDYW 558


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/591 (40%), Positives = 355/591 (60%), Gaps = 7/591 (1%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYL-IYA 85
           S P ++   +T       +LLQ C + K     KQ+HA     G   +     K + +Y 
Sbjct: 62  SNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYC 121

Query: 86  IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           +      +S A  +F  +   NIF WN +IRGYA +     AV+LY +M   G+ PD  T
Sbjct: 122 VCD---SLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFT 178

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +PF+LKA + L+ +  G + H   ++ G+E  VFV  +L+ MYA  G V  A +VF+ + 
Sbjct: 179 FPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKIL 238

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            RD V WNS++  ++ NG P+  L+L  EM   G+ P   T+V+  SA A+  AL  GR 
Sbjct: 239 VRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRE 298

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H   W+     +  V  AL+D Y+KCG +  A+ +F  +  +  VSW+ ++ G A++G 
Sbjct: 299 LHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGH 358

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
             EAL+LF+EM      P  +TFVGVL ACSH G+++EG+ +F+ M  +Y I P ++H+ 
Sbjct: 359 ATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 417

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDLLG +G + +AY  I  M + P++ +W  LL +C IH +  + EIA   L++LEP 
Sbjct: 418 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 477

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
            +G+YV+LSN+YA   +W  V ++R+ M   R+KK+   S +E+ N+V  F  GD SHP 
Sbjct: 478 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPL 537

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           ++EI++ L  +   +K  GY P T +VF D+E++EK + +  HSE++AIAF L++T PGT
Sbjct: 538 SDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGT 597

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            + + KNLR+C DCH+AIK ISK+  REI VRD +R+HHFKDG CSC DYW
Sbjct: 598 RLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 339/530 (63%)

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           +S S  +     IF  + + ++ +WNT+I G A +      + +  +M  + +KPD+ T 
Sbjct: 244 ISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTL 303

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             +L  I++  D+  G++ H  +IR G ++ V+V +SL+ MYA    V D+ +VF L++E
Sbjct: 304 SSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTE 363

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD ++WNS+I G   NG  +E L  FR+M    ++P  Y+  S+  ACA L  L LG++ 
Sbjct: 364 RDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 423

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y+ + G  +N+ + ++L+D Y+KCG I  A+++F  MR R+ VSW+ +++G A++G  
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHA 483

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
            +A+ELF++M+  G  P  V F+ VL ACSH G+VDE + YF  M  ++GI P +EH+  
Sbjct: 484 LDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAA 543

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           + DLLGRAG +++AY++I  M + P   +W TLL AC +H +  +AE   + +L+++PK+
Sbjct: 544 VSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN 603

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
           +G Y+LL+N+Y+  +RW    + R ++ +  ++KTP  S +E+ N+V+ F  GD SHP  
Sbjct: 604 TGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCY 663

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
           E+I   +  + + ++ EGYVP T  V  D+EEE+K+  +  HSE++AI F ++NT  GT 
Sbjct: 664 EKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTT 723

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +RV KNLRVC DCH A K ISK+  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 724 IRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 182/414 (43%), Gaps = 52/414 (12%)

Query: 30  TPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           +P S E  + S++R  +++      S+ + +Q+HA  ++              IY+ ++L
Sbjct: 3   SPTSTEALVNSLLRNPLSI-----KSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINL 57

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              +  +  +F+ +  P    W ++IR Y     P  ++  +  M  SG+ PD + +P +
Sbjct: 58  ---LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSV 114

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD-------ACKVFE 202
           LKA + L D+ +GE  H   IR G +  ++  N+L++MY+    +K        A +V +
Sbjct: 115 LKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLD 174

Query: 203 LMSERDL-VAWNSVINGFASNGKPNEALTLF--------REMASEGVEPDGYTMVSLFSA 253
            M+ER   V   SV+ G  + G+    +  F        RE  ++ +E D Y   S +  
Sbjct: 175 EMTERTRSVRTASVLVG--NQGRKVSDIEAFNYDVSCRSREFEAQVLEID-YKPRSEYR- 230

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
             E+ A  LG++         +S +++V+              + +++F  M +++ VSW
Sbjct: 231 --EMEACNLGQQIKD------ISHSMSVD--------------SVRKIFEMMPEKDLVSW 268

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           +T++ G A NG   E L + +EM      P   T   VL   +    + +G         
Sbjct: 269 NTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG-KEIHGCSI 327

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             G+  ++     ++D+  +   V  +Y  +  +L   + + W +++  C  +G
Sbjct: 328 RQGLDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGISWNSIIAGCVQNG 380


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 338/591 (57%), Gaps = 68/591 (11%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           S A  IF    + N+  +N MIR Y  +   + A+ ++  M      PD +T+P +LKA 
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKAC 147

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQN------------------------------- 182
           S L ++R+G Q H   ++ G ++ +F+ N                               
Sbjct: 148 SGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207

Query: 183 SLVHMYAAFGHVKDA---CK----------------------------------VFELMS 205
           S+V  YA  G   DA   CK                                  +FE M+
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMT 267

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           +++L++WN +I  + +N  PNEA++LF +M   G++PD  T+ SL  AC +L AL LGRR
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H Y+ K  L  N+ + NALLD Y+KCG +  A+ VF +MR R+ VSW++++     +G 
Sbjct: 328 LHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G +A+ LF +M   G  P  + FV VL ACSH G++D+G  YF+ M ++YGI+P+IEHF 
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDL GRAG V++AY +I+ M M PN  +W  LL AC +H    I  +A   L QL PK
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPK 507

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
            SG YVLLSN+YA    W +V  VR  M K  +KK PG S VEL  +V  F  GD+ HPQ
Sbjct: 508 QSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQ 567

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            + I+  L  +  K+K  GY+P+TE+   D+E E+KE  L+ HSEK+AI F ++NT  GT
Sbjct: 568 AKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGT 627

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P+R+ KNLRVC DCH+AIKLISK+ SR I+VRD +RFHHF +G CSC DYW
Sbjct: 628 PIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 13/258 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + Y HN+F  +   N+ +WN MI  Y  ++ P  AV L+ +M   G+KPD  T   LL A
Sbjct: 256 VQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPA 315

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              L+ + +G + H    +   +  + ++N+L+ MYA  G +++A  VF+ M  RD+V+W
Sbjct: 316 CGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSW 375

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
            S+++ +  +G+  +A+ LF +M   G  PD    VS+ SAC+  G L  GR        
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE 435

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEAL 330
           + G+   +     ++D + + G +  A    ++M  + N   W  L+           A 
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALL----------SAC 485

Query: 331 ELFKEMEIGGFVPGEVTF 348
            +  +M+I G V  ++ F
Sbjct: 486 RVHSKMDI-GLVAADLLF 502



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           L+  Y+A G    A  +F+   E+++V +N +I  + +N    EAL++F+ M S    PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            YT   +  AC+ L  L +G + H  + KVGL  N+ + NAL+  Y KCG +  A++V  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +M  R+ VSW+++V G A +G   +ALE+ KEM+
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 338/591 (57%), Gaps = 68/591 (11%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           S A  IF    + N+  +N MIR Y  +   + A+ ++  M      PD +T+P +LKA 
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKAC 147

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQN------------------------------- 182
           S L ++R+G Q H   ++ G ++ +F+ N                               
Sbjct: 148 SGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207

Query: 183 SLVHMYAAFGHVKDA---CK----------------------------------VFELMS 205
           S+V  YA  G   DA   CK                                  +FE M+
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMT 267

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           +++L++WN +I  + +N  PNEA++LF +M   G++PD  T+ SL  AC +L AL LGRR
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H Y+ K  L  N+ + NALLD Y+KCG +  A+ VF +MR R+ VSW++++     +G 
Sbjct: 328 LHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G +A+ LF +M   G  P  + FV VL ACSH G++D+G  YF+ M ++YGI+P+IEHF 
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDL GRAG V++AY +I+ M M PN  +W  LL AC +H    I  +A   L QL PK
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPK 507

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
            SG YVLLSN+YA    W +V  VR  M K  +KK PG S VEL  +V  F  GD+ HPQ
Sbjct: 508 QSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQ 567

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            + I+  L  +  K+K  GY+P+TE+   D+E E+KE  L+ HSEK+AI F ++NT  GT
Sbjct: 568 AKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGT 627

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P+R+ KNLRVC DCH+AIKLISK+ SR I+VRD +RFHHF +G CSC DYW
Sbjct: 628 PIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 13/258 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + Y HN+F  +   N+ +WN MI  Y  ++ P  AV L+ +M   G+KPD  T   LL A
Sbjct: 256 VQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPA 315

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              L+ + +G + H    +      + ++N+L+ MYA  G +++A  VF+ M  RD+V+W
Sbjct: 316 CGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSW 375

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
            S+++ +  +G+  +A+ LF +M   G  PD    VS+ SAC+  G L  GR        
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE 435

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEAL 330
           + G+   +     ++D + + G +  A    ++M  + N   W  L+           A 
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALL----------SAC 485

Query: 331 ELFKEMEIGGFVPGEVTF 348
            +  +M+I G V  ++ F
Sbjct: 486 RVHSKMDI-GLVAADLLF 502



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 90/154 (58%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           L+  Y+A G    A  +F+   E+++V +N +I  + +N    EAL++F+ M S    PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            YT   +  AC+ L  L +G + H  + KVGL  N+ + NAL+  Y KCG +  A++V  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +M  R+ VSW+++V G A +G   +ALE+ KEM+
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230



 Score = 38.5 bits (88), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+  YS  G    A+ +F    ++N V ++ ++     N    EAL +F+ M    F P 
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
             TF  VL ACS    +  G      +  + G+   +     +V + G+ G +++A + +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIV-KVGLDTNLFIGNALVAMYGKCGCLREARKVL 195

Query: 405 QNMLMPPNAVI-WRTLLGA 422
               MP   V+ W +++  
Sbjct: 196 DQ--MPYRDVVSWNSMVAG 212


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 361/612 (58%), Gaps = 58/612 (9%)

Query: 59  LKQVHAFSIRHGV---PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           LKQ+HA  I+ G    PL   ++ K+  ++    S  + YA  +F  + +PN F WNT++
Sbjct: 35  LKQLHAIFIKTGQIQDPLTAAEVIKFCAFS----SRDIDYARAVFRQMPEPNCFCWNTIL 90

Query: 116 RGYAESANPLL---AVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           R  AE+ +  L   A+ L+S M   G +KP+  T+P +LKA ++ + +R G+Q H + ++
Sbjct: 91  RVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVK 150

Query: 172 NGFESLVFVQNSLVHMYAA----------------------------------------- 190
            GF    FV ++LV MY                                           
Sbjct: 151 FGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIM 210

Query: 191 ------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                  G +K A  +F+ M +R +V+WN +I+G+A NG   EA+ LF+EM S  ++P+ 
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T+VS+  A A +GAL LG+  H Y  K  +  +  + +AL+D YSKCG I  A +VF  
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFET 330

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + KRNA++WS ++   A++G  ++A+  F  M   G  P +V ++G+L ACSH G+V+EG
Sbjct: 331 LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            S+F  M    G+ P+IEH+GCMVDLLGRAG +++A E I+NM + P+ VIW+ LLGAC 
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACK 450

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           +H +  + E    TL++L P  SG YV LSNLYA    W  V  VR  M    ++K PG 
Sbjct: 451 MHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGC 510

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +E+   + EF + D SH + +EI AML E++ KL+  GY P T  VF + +E+E+  A
Sbjct: 511 SWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARA 570

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEKIA+AF L++TAP  P+++VKNLR+C DCH ++KLIS +Y R+I+VRDR RFH 
Sbjct: 571 LQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQ 630

Query: 605 FKDGHCSCRDYW 616
           F+ G CSC DYW
Sbjct: 631 FEHGSCSCMDYW 642


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/593 (42%), Positives = 371/593 (62%), Gaps = 29/593 (4%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           TL Q C ++ + LKQ+H   I  G+      L  +LI   +S  F + YA  IF+++ +P
Sbjct: 154 TLQQKC-NNFNTLKQIHTQIITTGLSFQTYCLS-HLIK--ISSKFNLPYAFKIFNYISNP 209

Query: 107 NIFTWNTMIRGYAESANP---LLAVELYSKMHVS-GIKPDTHTYPFLLKAI-SKLADVRM 161
            IF +NT+I       N     LA  LY+K+  +  ++P++ T+P L KA  S  +    
Sbjct: 210 TIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHY 269

Query: 162 GEQTHSVAIR---NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           G   H+  ++     F++  FVQ SL++ YA +G +  +  +F+ ++E DL  WN ++N 
Sbjct: 270 GPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNA 327

Query: 219 FASNGKPN-------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           +A +   +             E+L LFR+M   G+ P+  T+V+L SAC+ LGA++ G  
Sbjct: 328 YARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFW 387

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVN 323
            H +V +  +  N  V  A +D YSKCG +  A +VF +M    R++  ++ ++ G AV+
Sbjct: 388 VHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVH 447

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G+G +ALEL+++M+  G VP   TFV  ++ACSH G+V+EG   FK MK+ +G+ PK+EH
Sbjct: 448 GYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEH 507

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GC++DLLGRAG +K+A E++ +M M PNAV+WR+LLGA  IHG+  + E+A + L++LE
Sbjct: 508 YGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELE 567

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P+ SG+YVLLSN+YA   R  +V+ VR+ M    V K PG SLVE+   + EF  GDRSH
Sbjct: 568 PETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSH 627

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P ++EI+  +AEI  +L+  G+  RT     D+EEE+KE  LSYHSE++AIAF L+ +  
Sbjct: 628 PFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPS 687

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              +R++KNLRVC DCH   KLIS  Y REI+VRDR+RFHHFKDG CSC DYW
Sbjct: 688 SLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/558 (41%), Positives = 341/558 (61%), Gaps = 5/558 (0%)

Query: 60  KQVHAFSIRHG-VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           K +H ++IR G   L N       +Y   S    +  A  IF  +    + +WN+M+ GY
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMY---SKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++  P  A+ ++ KM   GI P   T    L A + L D+  G+  H    +    S +
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V NSL+ MY+    V  A  +F  ++ R  V+WN++I G+A NG+ +EAL  F EM S 
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++PD +TMVS+  A AEL      +  H  + +  L  N+ V  AL+D YSKCG I  A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +++F  +  R+ ++W+ ++ G   +G G+ AL+LF +M+ G   P ++T++ V+ ACSH 
Sbjct: 505 RKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHS 564

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+VDEG  +FK MK +YG+ P ++H+G MVDLLGRAG +K+A+++I+NM + P   ++  
Sbjct: 565 GLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGA 624

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
             GAC IH +  + E A   L +L P   G +VLL+N+YA   +W  V EVR+TM K+ +
Sbjct: 625 XXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL 684

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KKTPG S+VEL N V  F+ G  +HPQ++ I+A L E+  ++K  GYVP T N+  D+E+
Sbjct: 685 KKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVED 743

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           + +E  L+ HSEK+AIAF L+NT+PGT + V KNLRVC DCH A K IS V  REI+VRD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHFK+G CSC DYW
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 196/360 (54%), Gaps = 4/360 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LL++C S K +L Q+    I++G  L N  L +  + ++ S    ++ A  +F  + D  
Sbjct: 55  LLELCTSMK-ELHQIIPLVIKNG--LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              ++TM++GYA++++   A+    +M    +KP  + + +LLK     AD++ G++ H 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             I N F + VF    +V+MYA    + DA K+F+ M ERDLV+WN++I GF+ NG   +
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL L   M  EG  PD  T+V++  A A++G L +G+  H Y  + G +  VN++ AL D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A+ +F  M ++  VSW++++ G   NG  ++A+ +F++M   G  P  VT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            +  L+AC+  G ++ G  +  +  D+  +   I     ++ +  +   V  A +   N+
Sbjct: 352 IMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 222/470 (47%), Gaps = 66/470 (14%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           ++K  S E      CR++           + +  VV     LL+VC  +    + K++H 
Sbjct: 122 YAKNSSLETALAFLCRMRY----------DDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
             I +    N      + +  +V++      +  A+ +F  + + ++ +WNT+I G++++
Sbjct: 172 QLITNSFAAN-----VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A+EL  +M   G +PD+ T   +L A + +  + +G+  H  AIR GF  LV + 
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
            +L  MY+  G V+ A  +F+ M ++ +V+WNS+++G+  NG+P +A+ +F +M  EG++
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P G T++    ACA+LG L  G+  H +V ++ L  +++V N+L+  YSKC  +  A  +
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDI 406

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC------ 355
           F  +  R  VSW+ +++G A NG   EAL  F EM+  G  P   T V V+ A       
Sbjct: 407 FNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT 466

Query: 356 -----------------------------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
                                        S CG +      F  + D + I      +  
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNA 521

Query: 387 MVDLLGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACTIHGHSAIAE 433
           M+D  G  GL + A +    M    + PN + + +++ AC+   HS + +
Sbjct: 522 MIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS---HSGLVD 568


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 341/557 (61%), Gaps = 33/557 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +   + +F ++   ++ +WN+MI  + +   P  A+EL+ +M    +KP+  T   +L A
Sbjct: 187 LGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSA 246

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV-- 210
            +K +D   G   HS   RN     + + N+++ MY   G V+DA ++F+ M E+D+V  
Sbjct: 247 CAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSW 306

Query: 211 -----------------------------AWNSVINGFASNGKPNEALTLFREMA-SEGV 240
                                        AWN++I+ +   GKP EAL LF E+  S+  
Sbjct: 307 TTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTA 366

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD  T+VS  SACA+LGA+ LG   H Y+ K G+  N ++  +L+D Y KCG +  A  
Sbjct: 367 KPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALM 426

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + +++   WS ++ GLA++G GK+A+ LF +M+     P  VTF  +L ACSH G+
Sbjct: 427 VFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGL 486

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V+EG ++F +M+  YG++P ++H+ CMVD+LGRAGL+++A E I+ M M P A +W  LL
Sbjct: 487 VEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GACTIH +  +AE A S L++LEP + G YVLLSN+YA   +W  V  +R+ M    +KK
Sbjct: 547 GACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKK 606

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+   V EF +GD SHP  ++I+A L EI  +L+  GYVP   ++   +EEE+
Sbjct: 607 EPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEED 666

Query: 541 -KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE AL  HSEK+AIAF L++T    P+R+VKNLRVC DCH   KL+SK+Y REI++RDR
Sbjct: 667 VKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 726

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHF++GHCSC DYW
Sbjct: 727 YRFHHFREGHCSCMDYW 743



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 245/468 (52%), Gaps = 47/468 (10%)

Query: 20  PCRVK-SLYHSTPASQENPITS------VVRKCITLLQVCASSKHKLKQVHAFSIRHGVP 72
           PC V     HS P    N IT            ++L+  C+ +K +LKQ+HA  +R G+ 
Sbjct: 6   PCLVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETK-QLKQIHAQMLRTGL- 63

Query: 73  LNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +P     LI A     FP + YA  +F  +  PN++TWNT+IR YA S+NP  ++ ++
Sbjct: 64  FFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIF 123

Query: 132 SKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
            +M H S   PD  T+PFL+KA S+L ++  G+  H + I+    S VF+ NSL+H YA 
Sbjct: 124 LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAK 183

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G +    +VF  +  RD+V+WNS+I  F   G P EAL LF+EM ++ V+P+G TMV +
Sbjct: 184 CGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGV 243

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SACA+      GR  H+Y+ +  + +++ ++NA+LD Y+KCG +  A+R+F +M +++ 
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303

Query: 311 VSWSTLVVGLA-------------------------------VNGFGKEALELFKEMEIG 339
           VSW+T++VG A                                 G  KEALELF E+++ 
Sbjct: 304 VSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLS 363

Query: 340 GFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P EVT V  L AC+  G +D G      +K + G+         ++D+  + G ++
Sbjct: 364 KTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHLTTSLIDMYCKCGDLQ 422

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGH--SAIAEIARSTLLQLEP 444
           +A     + +   +  +W  ++    +HGH   AIA  ++    +++P
Sbjct: 423 KALMVFHS-VERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKP 469


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/594 (40%), Positives = 349/594 (58%), Gaps = 67/594 (11%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           +S  +LKQ+HA  ++   PL++  L +  + ++ + +   SYA  IF  +    +  WNT
Sbjct: 26  TSPFELKQLHAHLLKTNSPLSSLPLSR--VASVCAFNSSFSYAKLIFQLLDASEVTHWNT 83

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
            +R +AE  +P  A+ L+ ++    I PD +T  F+LKA S+L DVR G+  H    + G
Sbjct: 84  CLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLG 143

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN-------------------- 213
            +S +F+QN +VH+YA  G +  A KVF+ M +RD++ WN                    
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 214 -----------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                      S+I G+A  GK  EA+ LF EM   G+ P+  T+V++  ACA++G L L
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           GRR H +  + G   N+ V N L+D Y KCG +  A R+F  M +R  VSWS ++ GLA 
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G  ++AL LF +M   G  P  VTF+G+L+ACSH GMV++G  YF  M  +YGI+P+IE
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+GCMVDL  RAGL+++A+E+I NM + PN V+W  LLG C +H +  +AE A   L +L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKL 443

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +P + G YV+LSN+YA   RW +V  VR+                          M DR 
Sbjct: 444 DPLNDGYYVVLSNIYAEAGRWEDVARVRK-------------------------LMRDRG 478

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
             +         ++ +++KL+GYVP T  V  D+EE++KE  L  HSEK+A+ F L+ T 
Sbjct: 479 TWE---------KLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTT 529

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           PGT +R++KNLRVC DCH A+K+IS V +REIVVRDR+RFH FK+G CSC DYW
Sbjct: 530 PGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/598 (42%), Positives = 373/598 (62%), Gaps = 20/598 (3%)

Query: 31  PASQENP--ITSVVRK-CITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           P S  NP  + S+ +K  I+LLQ    S+H  ++  +HA  IR+G    +P    ++++ 
Sbjct: 25  PNSNSNPKSLKSLDQKQIISLLQ---RSRHINQVLPIHAQLIRNGHS-QDP----FMVFE 76

Query: 86  IV---SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           ++   S    + YA  IF +  +PN++ +  +I G+  S N L A++LYS+M    I PD
Sbjct: 77  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPD 136

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +    +LKA      +R G + HS A++ GF S   V+  ++ +Y   G + DA +VFE
Sbjct: 137 NYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFE 196

Query: 203 LMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
            M E    +D V W ++I+GF  N + N AL  FR M  E V P+ +T+V + SAC++LG
Sbjct: 197 EMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 256

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL +GR  H+Y+ K  +  N+ V NAL++ YS+CG I  AQ VF EM+ R+ ++++T++ 
Sbjct: 257 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 316

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           GL++NG  ++A+ELF+ M      P  VTFVGVL ACSH G+VD GF  F  M  +Y + 
Sbjct: 317 GLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVE 376

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
           P+IEH+GCMVDLLGR G +++AY+ I+ M M P+ ++  TLL AC +H +  + E     
Sbjct: 377 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKE 436

Query: 439 LLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
           L       SG YVLLS++YA   +W    +VR  M +  ++K PG S +E+ N + EF +
Sbjct: 437 LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 496

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD  HPQ E I+  L E+ + L+LEGY P  E V  DIE+ EKE AL+ HSE++AI + L
Sbjct: 497 GDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGL 556

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++T P T +RV+KNLRVC DCH AIKLI+K+  R+IVVRDR+RFH+F++G CSC DYW
Sbjct: 557 ISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/528 (40%), Positives = 333/528 (63%)

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
           + F +     +F  +   ++ ++NT+I GYA+S     A+ +  +M  + +KPD+ T   
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L   S+  DV  G++ H   IR G +S V++ +SLV MYA    ++D+ +VF  +  RD
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            ++WNS++ G+  NG+ NEAL LFR+M +  V+P      S+  ACA L  L LG++ H 
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           YV + G   N+ + +AL+D YSKCG I AA+++F  M   + VSW+ +++G A++G G E
Sbjct: 368 YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHE 427

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           A+ LF+EM+  G  P +V FV VL ACSH G+VDE + YF  M   YG+  ++EH+  + 
Sbjct: 428 AVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVA 487

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAG +++AY +I  M + P   +W TLL +C++H +  +AE     +  ++ ++ G
Sbjct: 488 DLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMG 547

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
            YVL+ N+YA   RW  + ++R  M K+ ++K P  S +E+ N+   F  GDRSHP  ++
Sbjct: 548 AYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDK 607

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I+  L  + ++++ EGYV  T  V  D++EE K + L  HSE++A+AF ++NT PGT +R
Sbjct: 608 INEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIR 667

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V KN+R+C DCH+AIK ISK+  REI+VRD SRFHHF  G+CSC DYW
Sbjct: 668 VTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 200/413 (48%), Gaps = 47/413 (11%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           SK + KQ+HA  IR     +       ++ +I +    +  A  +F  ++ P +  W ++
Sbjct: 20  SKSQAKQLHAQFIR---TQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSV 76

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           IR + + +    A+  + +M  SG  PD + +P +LK+ + + D+R GE  H   +R G 
Sbjct: 77  IRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGM 136

Query: 175 ESLVFVQNSLVHMYA---------AFGHVKD-----------------AC---------- 198
           +  ++  N+L++MYA         + G+V D                  C          
Sbjct: 137 DCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVR 196

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           +VFE+M  +D+V++N++I G+A +G   +AL + REM +  ++PD +T+ S+    +E  
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            +  G+  H YV + G+  +V + ++L+D Y+K   I  ++RVF  +  R+ +SW++LV 
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEY 375
           G   NG   EAL LF++M      PG V F  V+ AC+H   +  G     Y  R     
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG---- 372

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           G    I     +VD+  + G +K A +    M +  + V W  ++    +HGH
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGH 424



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 47/319 (14%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV-HMYAAFGHVKDACKVFELMSER 207
           L+K  +++      +Q H+  IR   +SL     S+V  +Y     + +A  +F+ +   
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRT--QSLSHTSASIVISIYTNLKLLHEALLLFKTLKSP 68

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
            ++AW SVI  F      ++AL  F EM + G  PD     S+  +C  +  L  G   H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 268 TYVWKVGLSDNVNVNNALLDFYSK---------------------------------CGI 294
            ++ ++G+  ++   NAL++ Y+K                                 C +
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188

Query: 295 ---IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
              I + +RVF  M +++ VS++T++ G A +G  ++AL + +EM      P   T   V
Sbjct: 189 PFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSV 248

Query: 352 LYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           L   S    V +G     Y  R     GI   +     +VD+  ++  ++ + E + + L
Sbjct: 249 LPIFSEYVDVIKGKEIHGYVIRK----GIDSDVYIGSSLVDMYAKSARIEDS-ERVFSRL 303

Query: 409 MPPNAVIWRTLLGACTIHG 427
              + + W +L+     +G
Sbjct: 304 YCRDGISWNSLVAGYVQNG 322


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/574 (43%), Positives = 352/574 (61%), Gaps = 6/574 (1%)

Query: 46  ITLLQVCAS-SKHKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L+ CAS S  K  K+VHA  IRHG   ++  +G  L+  +      ++ A  IF ++
Sbjct: 133 MIILKACASLSALKWGKEVHA-CIRHGGLESDVRVGTALLR-MYGKCGSINEARRIFDNL 190

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            + +I +W  MI  YA+S N   A  L  +M   G KP+  TY  +L A +    ++  +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H  A+  G E  V V  +LV MYA  G + DA  VF+ M  RD+V+WN +I  FA +G
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           + +EA  LF +M +EG +PD    +S+ +ACA  GAL   ++ H +    GL  +V V  
Sbjct: 311 RGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGT 370

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  YSK G I  A+ VF  M+ RN VSW+ ++ GLA +G G++ALE+F+ M   G  P
Sbjct: 371 ALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKP 430

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             VTFV VL ACSH G+VDEG S +  M   YGI P + H  CMVDLLGRAG + +A  +
Sbjct: 431 DRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLF 490

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I NM + P+   W  LLG+C  +G+  + E+     L+L+PK++  YVLLSN+YA   +W
Sbjct: 491 IDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKW 550

Query: 464 LNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
             V  VR TM++ER ++K PG S +E+ N++ +F + D SHP+ +EI+    ++ +K+K 
Sbjct: 551 DMVSWVR-TMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKA 609

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           EGY+P T  V  +   ++KE  +  HSEK+AI + L++T PG P+RV KNLRVC DCH A
Sbjct: 610 EGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGA 669

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KLISKV  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 670 TKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 206/437 (47%), Gaps = 50/437 (11%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L+ C   K  +  KQVH   I+  +   N  +   L++  +     +  A  +F  +
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRME-QNAHVMNNLLHVYIECG-RLQEARCVFDAL 89

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              +  +WN MI GY E  +   A+ L+ +M   G++P+  TY  +LKA + L+ ++ G+
Sbjct: 90  VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGK 149

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H+     G ES V V  +L+ MY   G + +A ++F+ +   D+++W  +I  +A +G
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA  L  +M  EG +P+  T VS+ +ACA  GAL   +R H +    GL  +V V  
Sbjct: 210 NGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGT 269

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y+K G I  A+ VF  M+ R+ VSW+ ++   A +G G EA +LF +M+  G  P
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 344 GEVTFVGVLYAC-----------------------------------SHCGMVDEGFSYF 368
             + F+ +L AC                                   S  G +D+    F
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTI 425
            RMK     +  +  +  M+  L + GL + A E  + M    + P+ V +  +L AC+ 
Sbjct: 390 DRMK-----VRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACS- 443

Query: 426 HGHSAIAEIARSTLLQL 442
             H+ + +  RS  L +
Sbjct: 444 --HAGLVDEGRSQYLAM 458



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+  D+  Y  +LK   K  D+   +Q H   I++  E    V N+L+H+Y   G +++A
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             VF+ + ++   +WN++I G+  +    +A+ LFREM  EGV+P+  T + +  ACA L
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            AL  G+  H  +   GL  +V V  ALL  Y KCG I  A+R+F  +   + +SW+ ++
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---E 374
              A +G GKEA  L  +ME  GF P  +T+V +L AC+  G       + KR+     +
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG----ALKWVKRVHRHALD 258

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G+   +     +V +  ++G +  A      M +  + V W  ++GA   HG
Sbjct: 259 AGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV-RDVVSWNVMIGAFAEHG 310


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/521 (42%), Positives = 330/521 (63%), Gaps = 5/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   N+ +W TMI  Y++      A+EL   M    ++P+ +TY  +L++ + 
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           ++DVRM    H   I+ G ES VFV+++L+ ++A  G  +DA  VF+ M   D + WNS+
Sbjct: 175 MSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA N + + AL LF+ M   G   +  T+ S+  AC  L  L LG +AH ++  V  
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +NNAL+D Y KCG +  A RVF +M++R+ ++WST++ GLA NG+ +EAL+LF+ 
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +T VGVL+ACSH G++++G+ YF+ MK  YGI P  EH+GCM+DLLG+AG
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAG 409

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +  A + +  M   P+AV WRTLLGAC +  +  +AE A   ++ L+P+ +G Y LLSN
Sbjct: 410 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  Q+W +V+E+R  M    +KK PG S +E+  ++  F +GD SHPQ  E+   L +
Sbjct: 470 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQ 529

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +L   GYVP T  V  D+E E+ ED+L +HSEK+A+AF L+       +R+ KNLR+
Sbjct: 530 LIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRI 589

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  KL SK+  R IV+RD  R+HHF+DG CSC DYW
Sbjct: 590 CGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A++    +   G+  D+ TY  L+K       V  G         NG   ++F+ N L++
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY  F  + DA ++F+ M +R++++W ++I+ ++      +AL L   M  + V P+ YT
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  +C  +  +   R  H  + K GL  +V V +AL+D ++K G    A  VF EM 
Sbjct: 165 YSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF- 365
             +A+ W++++ G A N     ALELFK M+  GF+  + T   VL AC+   +++ G  
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           ++   +K +  ++        +VD+  + G ++ A   + N +   + + W T++     
Sbjct: 282 AHVHIVKYDQDLILN----NALVDMYCKCGSLEDALR-VFNQMKERDVITWSTMISGLAQ 336

Query: 426 HGHS 429
           +G+S
Sbjct: 337 NGYS 340


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/573 (42%), Positives = 361/573 (63%), Gaps = 7/573 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LLQ C SS  ++KQ+ A  I +G    +    K L    +S    +SYA +IF ++  P+
Sbjct: 7   LLQKC-SSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPS 65

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVS-GI-KPDTHTYPFLLKAISKLADVRMGEQT 165
              WN +IRG A S++P  AV  Y  M  S G+ + D  T  F LKA ++        Q 
Sbjct: 66  TNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQL 125

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           HS  +R GF + V +Q +L+  YA  G +  A K+F+ M + D+ +WN++I GFA   +P
Sbjct: 126 HSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRP 185

Query: 226 NEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            +A+  F+ M  +G + P+  T+     AC++LGAL  G   H Y+ +  L+ NV V N 
Sbjct: 186 ADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNV 245

Query: 285 LLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           ++D Y+KCG +  A  VF  MR  ++ ++W+T+++  A++G G +AL+LF+++   G  P
Sbjct: 246 VIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSP 305

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             V+++ VL AC+H G+V++G   F  M  + G+ P I+H+G MVDLLGRAG +K+AY+ 
Sbjct: 306 DAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDI 364

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           + ++  P N V+W+TLLGAC  +G   +AE+A   L+++     GD+VLLSN+YA  QRW
Sbjct: 365 VSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRW 423

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +V  VR  M +  VKKTPG S +E+  ++++F  GD+SH    EI+A L EI  ++K  
Sbjct: 424 DDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAY 483

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY   T NV  DI +E+KE+AL YHSEK+A+AF L  T  GTP++V+KNLR+C DCH+ I
Sbjct: 484 GYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVI 543

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLISK+Y REI+VRDR+RFH FK+G CSC+DYW
Sbjct: 544 KLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/552 (42%), Positives = 335/552 (60%), Gaps = 31/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ ++  ++ +W+ +I  Y ++     A+ L+ +M+ +GI  D      +L A S+
Sbjct: 242 ACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSR 301

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF------------------------ 191
           L  V  G+  H + ++ G E+ V +QN+L+HMY++                         
Sbjct: 302 LLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSM 361

Query: 192 -------GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                  G ++ A  +F+ M ++D V+W+++I+G+A   +  E L LF+EM  EG +PD 
Sbjct: 362 ISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDE 421

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +VS+ SAC  L AL  G+  H Y+ K GL  N+ +   L++ Y K G +  A  VF+ 
Sbjct: 422 TILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKG 481

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + ++   +W+ L++GLA+NG   ++L+ F EM+  G  P E+TFV VL AC H G+VDEG
Sbjct: 482 LEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEG 541

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             +F  M  E+ I P I+H+GCMVDLLGRAG++K+A E I++M M P+   W  LLGAC 
Sbjct: 542 HRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACK 601

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            +G +   E     L++L P H G  VLLSN+YA +  W++V EVR  M +  V KTPG 
Sbjct: 602 KYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGC 661

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S++E   RV EF  GD++HPQ E I  ML E+ KKLKLEGY P T  V  DI+EEEKE  
Sbjct: 662 SMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETT 721

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L  HSEK+AIAF L+   P TP+R+VKNLR+C DCH A KLISK ++REIVVRDR RFHH
Sbjct: 722 LFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHH 781

Query: 605 FKDGHCSCRDYW 616
           FK G CSC DYW
Sbjct: 782 FKQGSCSCMDYW 793



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 209/478 (43%), Gaps = 104/478 (21%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           T LQ C + K +  Q+ +  I  G   ++    + L ++       ++ ++ IFSH+++P
Sbjct: 31  THLQKCQNIK-QFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENP 89

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS-KLADVRMGEQT 165
           N F  NTM++GY +  +P  A+ +Y  M  S +  D +TYP L ++ S +LA+   G+  
Sbjct: 90  NGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFD-GKCI 148

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING------- 218
               ++ GF+S V++QN+L++MYA  G++ DA KVF+  S  D+V+WNS++ G       
Sbjct: 149 QDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNV 208

Query: 219 ------------------------FASNGKPNEALTLFREMA------------------ 236
                                   F   G   EA  LF EM                   
Sbjct: 209 EEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNE 268

Query: 237 -------------SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
                        + G+  D   ++S+ SAC+ L  +  G+  H  V KVG+   VN+ N
Sbjct: 269 MYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQN 328

Query: 284 ALLDFYSKCGIIIAAQRVFRE-------------------------------MRKRNAVS 312
           AL+  YS C  ++ AQ++F E                               M  ++ VS
Sbjct: 329 ALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS 388

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
           WS ++ G A      E L LF+EM+I G  P E   V V+ AC+H   +D+G    +Y +
Sbjct: 389 WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +     G+   I     ++++  + G V+ A E  +  L       W  L+    ++G
Sbjct: 449 K----NGLKINIILGTTLINMYMKLGCVEDALEVFKG-LEEKGVSTWNALILGLAMNG 501



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 7/238 (2%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA--FGHVKD 196
           +KP T T P L   + K  +++   Q  S  I +GF    F  + L+       F ++  
Sbjct: 20  LKP-TLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQ 78

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           + ++F  +   +    N+++ G+     P +A+ +++ M    V  D YT   LF +C+ 
Sbjct: 79  SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSI 138

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
             A   G+    +V KVG   +V + N L++ Y+ CG +  A++VF      + VSW+++
Sbjct: 139 RLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM 198

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           + G  + G  +EA +++  M     +        VL+     G V+E    F  MK +
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMI--VLFGKK--GNVEEACKLFNEMKQK 252


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/524 (44%), Positives = 335/524 (63%), Gaps = 4/524 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+ +   A+EL+ +M  + ++PD  T   +L A ++
Sbjct: 151 AQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQ 210

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              V +G Q HS    +GF S + + N+L+ +Y+  G V+ AC +FE +S +D+V+WN++
Sbjct: 211 SRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTL 270

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+       EAL LF+EM   G  P+  T+VS+  ACA LGA+ +GR  H Y+ K  L
Sbjct: 271 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDK-KL 329

Query: 276 SDNVN---VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            D  N   +  +L+D Y+KCG I AA +VF  M  ++  SW+ ++ G A++G      +L
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F  M   G  P ++TFVG+L ACSH G +D G   FK M  +Y I PK+EH+GCM+DLLG
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
            +GL K+A E I+ M M P+ VIW +LL AC  HG+  +AE     L+++EP++ G YVL
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA    W  V +VR  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ M
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGM 569

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKN
Sbjct: 570 LEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 629

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC +CH A KL+SK+Y REI+ RDR+RFHHF+DG CSC D+W
Sbjct: 630 LRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 209/385 (54%), Gaps = 38/385 (9%)

Query: 80  KYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
           K L + ++S  F    YA ++F+ +Q+PN   WNTM+RGYA S++P+ A++LY  M   G
Sbjct: 2   KLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG 61

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P+++T+PFLLK+ +K      G+Q H   ++ G+E  ++V  SL+ MYA  G ++DA 
Sbjct: 62  LLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAH 121

Query: 199 KVFELMSERDLVA-------------------------------WNSVINGFASNGKPNE 227
           KVF+  S RD+V+                               WN++I+G+A  G   E
Sbjct: 122 KVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKE 181

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL LF+EM    V PD  TMV++ SACA+  ++ LGR+ H+++   G   N+ + NAL+D
Sbjct: 182 ALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALID 241

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A  +F  +  ++ VSW+TL+ G       KEAL LF+EM   G  P +VT
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301

Query: 348 FVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            V +L AC+H G +D G     Y  +   +    P +     ++D+  + G ++ A++  
Sbjct: 302 IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVF 359

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHS 429
            +ML    +  W  ++    +HG +
Sbjct: 360 NSMLHKSLSS-WNAMIFGFAMHGRA 383


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 360/612 (58%), Gaps = 58/612 (9%)

Query: 59  LKQVHAFSIRHGV---PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           LKQ+HA  I+ G    PL   ++ K+  ++    S  + YA  +F  + +PN F WNT++
Sbjct: 35  LKQLHAIFIKTGQIQDPLTAAEVIKFCAFS----SRDIDYARAVFRQMPEPNCFCWNTIL 90

Query: 116 RGYAESANPLL---AVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           R  AE+ +  L   A+ L+S M   G +KP+  T+P +LKA ++ + +R G+Q H + ++
Sbjct: 91  RILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVK 150

Query: 172 NGFESLVFVQNSLVHMYAA----------------------------------------- 190
            GF    FV ++LV MY                                           
Sbjct: 151 FGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIM 210

Query: 191 ------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                  G +K A  +F+ M  R +V+WN +I+G+A NG   EA+ LF+EM S  ++P+ 
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T+VS+  A A +GAL LG+  H Y  K  +  +  + +AL+D YSKCG I  A +VF  
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFET 330

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + KRNA++WS ++   A++G  ++A+  F  M   G  P +V ++G+L ACSH G+V+EG
Sbjct: 331 LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            S+F  M    G+ P+IEH+GCMVDLLGRAG +++A E I+NM + P+ VIW+ LLGAC 
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACK 450

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           +H +  + E    TL++L P  SG YV LSNLYA    W  V  VR  M    ++K PG 
Sbjct: 451 MHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGC 510

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +E+   + EF + D SH + +EI AML E++ KL+  GY P T  VF + +E+E+  A
Sbjct: 511 SWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARA 570

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEKIA+AF L++TAP  P+++VKNLR+C DCH ++KLIS +Y R+I+VRDR RFH 
Sbjct: 571 LQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQ 630

Query: 605 FKDGHCSCRDYW 616
           F+ G CSC DYW
Sbjct: 631 FEHGSCSCMDYW 642


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/513 (44%), Positives = 331/513 (64%), Gaps = 3/513 (0%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+  +W  +I  Y ++ + L A+ +  +   SG++PD+ T   +L A +++AD+  GE  
Sbjct: 4   PSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAV 63

Query: 166 HSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            + A +  G    VFV  + + +Y   G ++ A  VF+ M  RD VAW +++ G+ASNG 
Sbjct: 64  WAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGH 123

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNN 283
           P EAL LF  M  EG +PD YT+V   SAC  LGAL LGR+A   V W   L + V +  
Sbjct: 124 PREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPV-LGT 182

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+KCG    A  VF++M +R+ + W+ +++GL + G  K A  L  +M+  G   
Sbjct: 183 ALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKL 242

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            + TF+G+L +C+H G+V++G  YF  M   Y I P+IEH+GCMVDL  RAGL+++A++ 
Sbjct: 243 NDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQL 302

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I +M M  NAV+W  LLG C IH ++ +AE A   L++LEP +SG+YV+LSN+Y+   RW
Sbjct: 303 IGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRW 362

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +  ++R  M  + ++K P  S VEL  +V +F++GD SHP +++I+A L E+  ++K  
Sbjct: 363 EDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAM 422

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY P TE V  D+E EEKE+ L +HSEKIAIAF L+ T PG  +RV KNLRVC DCH AI
Sbjct: 423 GYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAI 482

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLIS++  REIVVRD +RFH F+DGHCSC DYW
Sbjct: 483 KLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A ++F  +++ +   W  M+ GYA + +P  A++L+  M + G KPD +T    L A
Sbjct: 93  MEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSA 152

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L  + +G Q   +   +       +  +L+ MYA  G   +A  VF+ M ERD++ W
Sbjct: 153 CTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVW 212

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR---AHTY 269
           N++I G    G    A  L  +M   GV+ +  T + L  +C   G +  GR+     T+
Sbjct: 213 NAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTH 272

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVN 323
           V+++  S  +     ++D +S+ G++  A ++  +M    NAV W  L+ G  ++
Sbjct: 273 VYRI--SPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/523 (42%), Positives = 334/523 (63%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN +I GYA++ N   A++L+ +M  + +KPD  T   ++ A ++
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +++G Q HS    +G  S + + N+L+ +Y+  G V+ AC +F+ +S +D+++WN++
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTM 307

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA+LGA+  GR  H Y+ K   
Sbjct: 308 IGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIK 367

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AA +VF  M  R   + + ++ G A++G    A ++F
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIF 427

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M   Y I PK+EH+GCM+DLLG 
Sbjct: 428 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGH 487

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            GL K+A E I  M M P+ VIW +LL AC +HG+  + E     L+++EP++ G YVLL
Sbjct: 488 LGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLL 547

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V  +R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 548 SNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 607

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE K+ AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 667

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 668 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/423 (33%), Positives = 231/423 (54%), Gaps = 51/423 (12%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP- 92
           + +P  S++  C TL          L+ +HA  I+ G+   N  L + L + I+S +F  
Sbjct: 1   RNHPSLSLLHNCKTL--------QSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDG 52

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA ++F  +Q+PN+  WNTM RG+A S++P+ A++LY  M   G+ P+++T+PFLLK+
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA- 211
            +KL   + G+Q H   ++ G+E  ++V  SL+ MY   G  KDA KVF+  S RD+V+ 
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY 172

Query: 212 ------------------------------WNSVINGFASNGKPNEALTLFREMASEGVE 241
                                         WN++I+G+A  G   EAL LF+EM    V+
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  TMV++ SACA+ G++ LGR+ H+++   GL  N+ + NAL+D YSKCG +  A  +
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGL 292

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F+ +  ++ +SW+T++ G       KEAL LF+EM   G  P +VT + +L AC+  G +
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352

Query: 362 DEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNA 413
           D G        KR+K   G+         ++D+  + G ++ A++   +M    L   NA
Sbjct: 353 DFGRWIHVYIDKRIK---GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNA 409

Query: 414 VIW 416
           +I+
Sbjct: 410 MIF 412


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/522 (43%), Positives = 339/522 (64%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N   W +MI GY ++  P  A+ LY KM   G  PD  T   L+ A ++
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAE 192

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+ +G + HS       +    + ++LV+MYA  G +K A +VF+ +S++D+ AW+++
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSAL 252

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I G+  N +  EAL LFRE+A    + P+  T++++ SACA+LG L  GR  H Y+ +  
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQ 312

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V++NN+L+D +SKCG I AA+R+F  M  ++ +SW+++V GLA++G G+EAL  F 
Sbjct: 313 KGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFH 372

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+     P E+TF+GVL ACSH G+V EG   F  ++  YG+  K EH+GCMVDLL RA
Sbjct: 373 LMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRA 432

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           GL+ +A E+I+ M + P+  IW ++LGAC ++ +  + E A   LL+LEP + G Y+LLS
Sbjct: 433 GLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLS 492

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  + W  V++VR  M ++ ++KTPG S V + N    F  GD SHP+  EI  ML 
Sbjct: 493 NIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLR 552

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +KLKL GYV  T  V  +I++ +KE+++S HSEK+A+ + L+ +  G  + ++KNLR
Sbjct: 553 QVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLR 612

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH  IKL+SK+Y R+I +RDR+RFHHFKDG CSCRDYW
Sbjct: 613 VCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 206/376 (54%), Gaps = 12/376 (3%)

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM- 134
           P L K + + +   S  + YA+++F+H +  ++ TWN+M+R +  S  P  A++ Y++M 
Sbjct: 11  PSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEML 70

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
             S   PD  T+P LLK  + L + ++G+  H   ++    S ++++ +L++MYAA G +
Sbjct: 71  ERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDL 130

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           K A  +FE M  R+ V W S+I+G+  N  PNEAL L+++M  +G  PD  TM +L SAC
Sbjct: 131 KSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           AEL  L +G + H+++ ++ +     + +AL++ Y+KCG +  A++VF ++  ++  +WS
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWS 250

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
            L+ G   N    EAL+LF+E+  G  + P EVT + V+ AC+  G ++ G     Y  R
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GH 428
            +  + +         ++D+  + G +  A     +M    + + W +++    +H  G 
Sbjct: 311 TQKGHSVSLN----NSLIDMFSKCGDIDAAKRIFDSM-SYKDLISWNSMVNGLALHGLGR 365

Query: 429 SAIAEIARSTLLQLEP 444
            A+A+        L+P
Sbjct: 366 EALAQFHLMQTTDLQP 381


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/613 (40%), Positives = 367/613 (59%), Gaps = 56/613 (9%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS-FPMSYAHNIFSHVQ 104
           ++LL  C ++    KQ+H      G+  +    GK L+   VS+S   ++Y+  +F H  
Sbjct: 13  LSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFP 72

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLA-DVRMG 162
           +P+ F +NT+IR  + S+ PL +++ + ++     + PD+ ++ F LK I+      R G
Sbjct: 73  NPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQG 132

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN----- 217
            Q HS A R+GF+  +FV  +L+ MYA  G  + A KVF+ MS+ ++VAWN+V+      
Sbjct: 133 IQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRC 192

Query: 218 ---------------------------------GFASNGKPNEALTLFREMASEGVEPDG 244
                                            GFA +G  ++A   F+E+  +   P  
Sbjct: 193 GMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSE 252

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            ++  + SACA+ GA   G+  H ++ K G    V+VNNAL+D YSKCG +  A+ VF  
Sbjct: 253 VSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN- 311

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
                        + LA++G   EA+ +F EME  G  P  VTF+ +LYACSH G+V++G
Sbjct: 312 -------------ISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQG 358

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            + F +M++ YGI P IEH+GCMVDL GRA  +++AYE+I+ M + PN +IWRTLLGAC+
Sbjct: 359 CALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACS 418

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IHG+  +AE+ ++ L +++P +SGD+VLLSN+YA   +W +V  +RRTM+++ +KK PG 
Sbjct: 419 IHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGW 478

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK-LEGYVPRTENVFADIEEEEKED 543
           S++E+    + F  G++ +  T+E H  L EI  +L+  EGY P+  +V  D+EEEEKED
Sbjct: 479 SMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKED 538

Query: 544 ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFH 603
           ++S HSEK+A AF +     G  +R+VKNLRVC DCH  +KLISKVY  EI+VRDRSRFH
Sbjct: 539 SMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFH 598

Query: 604 HFKDGHCSCRDYW 616
            FK G CSCRDYW
Sbjct: 599 SFKGGFCSCRDYW 611


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 321/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   N+  WN MI  Y +      A+  +  +   GIKP++ T+  +L     
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  H + ++ G ES + V N+LV M+   G +  A  +F  M +RDLV+WN++
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GF  +GK   A   F+ M   G++PD  T   L +ACA   AL  GRR H  + +   
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V   L+  Y+KCG I  A +VF ++ K+N  SW++++ G A +G GKEALELF +
Sbjct: 647 DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQ 706

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +TFVG L AC+H G+++EG  +F+ MK E+ I P++EH+GCMVDL GRAG
Sbjct: 707 MQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAG 765

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A E+I  M + P++ +W  LLGAC +H +  +AE A    L+L+P  +G +V+LSN
Sbjct: 766 LLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSN 825

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W  V ++R+ M+   V K PG S +E+  +V  F+  D++HPQTEEIHA L  
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELER 885

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +++  GYVP T  V  D+E+ EKE AL YHSE++AI + L+ T P TP+ + KNLRV
Sbjct: 886 LHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRV 945

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+ RD +RFHHFKDG CSC D+W
Sbjct: 946 CGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 177/336 (52%), Gaps = 12/336 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ ++++WN ++ GY +      A +L+ +M    +KPD  T+  +L A + 
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             +V  G + +++ ++ G+++ +FV  +L++M+   G + DA KVF+ +  RDLV W S+
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A +G+  +A  LF+ M  EGV+PD    VSL  AC    AL  G++ H  + +VG 
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V  A+L  Y+KCG +  A  VF  ++ RN VSW+ ++ G A +G   EA   F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-----YGIMPKIEHFGCMVDL 390
           M   G  P  VTF+ +L ACS    +  G    ++++D      YG   ++     ++ +
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRG----QQIQDHIIEAGYGSDDRVR--TALLSM 457

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
             + G +K A+   +  +   N V W  ++ A   H
Sbjct: 458 YAKCGSLKDAHRVFEK-ISKQNVVAWNAMITAYVQH 492



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 208/394 (52%), Gaps = 26/394 (6%)

Query: 46  ITLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           ++LL+ C    +  + K+VHA     G      D   Y+  AI+S+      M  A  +F
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGW-----DTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V+  N+ +W  MI G+A+      A   ++KM  SGI+P+  T+  +L A S  + ++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G+Q     I  G+ S   V+ +L+ MYA  G +KDA +VFE +S++++VAWN++I  + 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            + + + AL  F+ +  EG++P+  T  S+ + C    +L LG+  H  + K GL  +++
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V+NAL+  +  CG +++A+ +F +M KR+ VSW+T++ G   +G  + A + FK M+  G
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG 610

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-------MVDLLGR 393
             P ++TF G+L AC+    + EG    +R+   + ++ +   F C       ++ +  +
Sbjct: 611 IKPDKITFTGLLNACASPEALTEG----RRL---HALITEAA-FDCDVLVGTGLISMYTK 662

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G ++ A++     L   N   W +++     HG
Sbjct: 663 CGSIEDAHQVFHK-LPKKNVYSWTSMIAGYAQHG 695



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 197/396 (49%), Gaps = 14/396 (3%)

Query: 43  RKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAH 97
           R  +++L  CA +++  K ++++   ++ G      D   ++  A++++      +  A 
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGW-----DTDLFVGTALINMHIKCGDIGDAT 266

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F ++   ++ TW +MI G A       A  L+ +M   G++PD   +  LL+A +   
Sbjct: 267 KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPE 326

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  G++ H+     G+++ ++V  +++ MY   G ++DA +VF+L+  R++V+W ++I 
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIA 386

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           GFA +G+ +EA   F +M   G+EP+  T +S+  AC+   AL  G++   ++ + G   
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGS 446

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  V  ALL  Y+KCG +  A RVF ++ K+N V+W+ ++     +     AL  F+ + 
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
             G  P   TF  +L  C     ++ G + +F  MK   G+   +     +V +    G 
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK--AGLESDLHVSNALVSMFVNCGD 564

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +  A     +M    + V W T++     HG + +A
Sbjct: 565 LMSAKNLFNDM-PKRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 179/329 (54%), Gaps = 4/329 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F+ ++D      N ++   +++     A+++  ++  S I+    TY  LL+   K  +
Sbjct: 68  VFADIKDTQ--KANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  GE+ ++   ++G +  +F++N+L++MYA  G+   A ++F+ M E+D+ +WN ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +G   EA  L  +M  + V+PD  T VS+ +ACA+   +  GR  +  + K G   +
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V  AL++ + KCG I  A +VF  +  R+ V+W++++ GLA +G  K+A  LF+ ME 
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P +V FV +L AC+H   +++G     RMK E G   +I     ++ +  + G ++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSME 364

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            A E + +++   N V W  ++     HG
Sbjct: 365 DALE-VFDLVKGRNVVSWTAMIAGFAQHG 392



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 4/233 (1%)

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           K  C VF  +  +D    N+V+N  +  G+ NEA+ +   + S  ++    T  +L   C
Sbjct: 63  KGRCVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLC 120

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
            +   L  G R + ++ K G+  ++ + N L++ Y+KCG  I+A+++F +MR+++  SW+
Sbjct: 121 IKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWN 180

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            L+ G   +G  +EA +L ++M      P + TFV +L AC+    VD+G   +  +  +
Sbjct: 181 LLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-K 239

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G    +     ++++  + G +  A +   N L   + V W +++     HG
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDN-LPTRDLVTWTSMITGLARHG 291


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/645 (38%), Positives = 377/645 (58%), Gaps = 59/645 (9%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
            ++LY     S  + +   +  C T+          L Q+HA  I+ G   +     + L
Sbjct: 4   TQTLYSPGGNSPASSLFPQINTCRTI--------RDLSQIHAVFIKSGQIRDTLAAAEIL 55

Query: 83  IYAIVSL--SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESA--NPLLAVELYSKMHVSG 138
            +   S      + YAH IF+ +   N F+WNT+IRG++ES     L+A+ L+ +M    
Sbjct: 56  RFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDE 115

Query: 139 -IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            I+P+  T+P +LKA +K   ++ G+Q H +A++ GF    FV ++LV MY   G +KDA
Sbjct: 116 FIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDA 175

Query: 198 C---------------------------------------------KVFELMSERDLVAW 212
           C                                              +F+ M +R +V+W
Sbjct: 176 CVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSW 235

Query: 213 NSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           N++I+G++ NG   +A+ +FREM   E + P+  T+VS+  A + LG+L LG   H Y  
Sbjct: 236 NTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAE 295

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             G+  +  + +AL+D YSKCGII  A  VF  + + N ++WS ++ G A++G   +A++
Sbjct: 296 DSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAID 355

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F +M   G  P +V ++ +L ACSH G+V+EG  YF +M    G+ P+IEH+GCMVDLL
Sbjct: 356 CFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLL 415

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GR GL+ +A E+I NM + P+ VIW+ LLGAC +H +  + +   + L+ + P  SG YV
Sbjct: 416 GRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYV 475

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
            LSN+YA +  W  V E+R  M +  ++K PG S +++   + EF + D SHP+ +EI++
Sbjct: 476 ALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINS 535

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
           ML EI+ KL+L GY P T  V  ++EEE+KE+AL YHSEK+A AF L++T+PG P+R+VK
Sbjct: 536 MLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVK 595

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR+C DCH +IKLISKVY R+I VRDR RFHHF+DG CSC DYW
Sbjct: 596 NLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/564 (42%), Positives = 345/564 (61%), Gaps = 17/564 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN-------IFSHVQDPNIFTWN 112
           KQ+H     H +  NN      +  + VS +   +Y+ N       +     + ++  WN
Sbjct: 444 KQIHV----HAIKTNN------VADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDLVAWN 493

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            M+ GY +S +    +EL++ MH  G + D  T   +LK    L  +  G+Q H+ AI++
Sbjct: 494 AMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS 553

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G++  ++V + ++ MY   G +  A   F+ +   D VAW ++I+G   NG+   AL +F
Sbjct: 554 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVF 613

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            +M   GV PD +T+ +L  A + L AL  GR+ H    K+  + +  V  +L+D Y+KC
Sbjct: 614 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKC 673

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  A  +F+ +   N  +W+ ++VGLA +G GKEAL+LFK+ME  G  P +VTF+GVL
Sbjct: 674 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVL 733

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+V E + Y + M  +YGI P+IEH+ C+ D LGRAGLVK+A   I +M M  +
Sbjct: 734 SACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEAS 793

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
           A ++RTLL AC + G +   +   + LL+LEP  S  YVLLSN+YA   +W  ++  R  
Sbjct: 794 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 853

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M   +VKK PG S +E+ N++  F + DRS+PQTE I+  + ++ + +K EGYVP T+  
Sbjct: 854 MKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFT 913

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             D+EEEEKE AL YHSEK+A+AF L++T P TP+RV+KNLRVC DCH A+K ISKVY R
Sbjct: 914 LVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDR 973

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EIV+RD +RFH FKDG CSC DYW
Sbjct: 974 EIVLRDANRFHRFKDGICSCGDYW 997



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 20/329 (6%)

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           I + N ++ GY  +      ++ +  M  S ++ D  T+  +L    +L  + +G+Q H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           +A++ G + ++ V NSL++MY     +  A  VF  MSERDL++WNSVI G A +    E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALL 286
           A+ LF ++   G++PD YTM S+  A + L   L+L ++ H +  K     +  V+ AL+
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D YS+   +  A+ +F      + V+W+ ++ G   +  G + LELF  M   G    + 
Sbjct: 467 DAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDF 525

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK-------- 398
           T   VL  C     +++G     +    Y I       G  +DL   +G++         
Sbjct: 526 TLATVLKTCGFLFAINQG-----KQVHAYAIKS-----GYDLDLWVSSGILDMYVKCGDM 575

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            A ++  + +  P+ V W TL+  C  +G
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENG 604



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 157/337 (46%), Gaps = 48/337 (14%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           ++ +++ C+    VCAS     +  H ++ + G+     D   ++  A+V++        
Sbjct: 155 LSPMLKLCLHSGYVCAS-----ESFHGYACKIGL-----DGDDFVAGALVNIYLKFGKVK 204

Query: 98  N---IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
               +F  +   ++  WN M++ Y E      A++L S  H SG+ P+  T    L+ +S
Sbjct: 205 EGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT----LRLLS 260

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +++    G+ + +  ++                  +F +  DA  V E++S       N 
Sbjct: 261 RIS----GDDSEAGQVK------------------SFENGNDASAVSEIISR------NK 292

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++G+   G+ +  L  F +M    +E D  T + + +    L +LALG++ H    K+G
Sbjct: 293 ILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLG 352

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L   + V+N+L++ Y K   I  A+ VF  M +R+ +SW++++ G+A +    EA+ LF 
Sbjct: 353 LDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFM 412

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           ++   G  P   T   VL A S    + EG S  K++
Sbjct: 413 QLLRCGLKPDHYTMTSVLKAASS---LPEGLSLSKQI 446



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 10/212 (4%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHS--VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
             + FL  AIS  +D+ +G+ TH+  +A+    E   F+ N+L+ MY+  G +  A +VF
Sbjct: 48  QCFGFLRDAIST-SDLMLGKCTHARILALEENPER--FLVNNLISMYSKCGSLTYARRVF 104

Query: 202 ELMSERDLVAWNSVINGFASNGKP-----NEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           + M ERDLV+WNS++  +A + +       EA  LFR +  + V     T+  +   C  
Sbjct: 105 DKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLH 164

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
            G +      H Y  K+GL  +  V  AL++ Y K G +   + +F EM  R+ V W+ +
Sbjct: 165 SGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLM 224

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           +      GF +EA++L       G  P E+T 
Sbjct: 225 LKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 75  NPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL----- 126
           NP+  ++L+  ++S+      ++YA  +F  + + ++ +WN+++  YA+S+  ++     
Sbjct: 78  NPE--RFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKE 135

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A  L+  +    +     T   +LK       V   E  H  A + G +   FV  +LV+
Sbjct: 136 AFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVN 195

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           +Y  FG VK+   +FE M  RD+V WN ++  +   G   EA+ L     + G+ P+  T
Sbjct: 196 IYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT 255

Query: 247 M 247
           +
Sbjct: 256 L 256


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 321/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   N+  WN MI  Y +      A+  +  +   GIKP++ T+  +L     
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  H + ++ G ES + V N+LV M+   G +  A  +F  M +RDLV+WN++
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GF  +GK   A   F+ M   G++PD  T   L +ACA   AL  GRR H  + +   
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V   L+  Y+KCG I  A +VF ++ K+N  SW++++ G A +G GKEALELF +
Sbjct: 647 DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQ 706

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +TFVG L AC+H G+++EG  +F+ MK E+ I P++EH+GCMVDL GRAG
Sbjct: 707 MQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAG 765

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A E+I  M + P++ +W  LLGAC +H +  +AE A    L+L+P  +G +V+LSN
Sbjct: 766 LLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSN 825

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W  V ++R+ M+   V K PG S +E+  +V  F+  D++HPQTEEIHA L  
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELER 885

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +++  GYVP T  V  D+E+ EKE AL YHSE++AI + L+ T P TP+ + KNLRV
Sbjct: 886 LHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRV 945

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+ RD +RFHHFKDG CSC D+W
Sbjct: 946 CGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 177/336 (52%), Gaps = 12/336 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ ++++WN ++ GY +      A +L+ +M    +KPD  T+  +L A + 
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             +V  G + +++ ++ G+++ +FV  +L++M+   G + DA KVF+ +  RDLV W S+
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A +G+  +A  LF+ M  EGV+PD    VSL  AC    AL  G++ H  + +VG 
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V  A+L  Y+KCG +  A  VF  ++ RN VSW+ ++ G A +G   EA   F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-----YGIMPKIEHFGCMVDL 390
           M   G  P  VTF+ +L ACS    +  G    ++++D      YG   ++     ++ +
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRG----QQIQDHIIEAGYGSDDRVR--TALLSM 457

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
             + G +K A+   +  +   N V W  ++ A   H
Sbjct: 458 YAKCGSLKDAHRVFEK-ISKQNVVAWNAMITAYVQH 492



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 181/324 (55%), Gaps = 10/324 (3%)

Query: 46  ITLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           ++LL+ C    +  + K+VHA     G      D   Y+  AI+S+      M  A  +F
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGW-----DTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V+  N+ +W  MI G+A+      A   ++KM  SGI+P+  T+  +L A S  + ++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G+Q     I  G+ S   V+ +L+ MYA  G +KDA +VFE +S++++VAWN++I  + 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            + + + AL  F+ +  EG++P+  T  S+ + C    +L LG+  H  + K GL  +++
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V+NAL+  +  CG +++A+ +F +M KR+ VSW+T++ G   +G  + A + FK M+  G
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG 610

Query: 341 FVPGEVTFVGVLYACSHCGMVDEG 364
             P ++TF G+L AC+    + EG
Sbjct: 611 IKPDKITFTGLLNACASPEALTEG 634



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 197/396 (49%), Gaps = 14/396 (3%)

Query: 43  RKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAH 97
           R  +++L  CA +++  K ++++   ++ G      D   ++  A++++      +  A 
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGW-----DTDLFVGTALINMHIKCGDIGDAT 266

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F ++   ++ TW +MI G A       A  L+ +M   G++PD   +  LL+A +   
Sbjct: 267 KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPE 326

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  G++ H+     G+++ ++V  +++ MY   G ++DA +VF+L+  R++V+W ++I 
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIA 386

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           GFA +G+ +EA   F +M   G+EP+  T +S+  AC+   AL  G++   ++ + G   
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGS 446

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  V  ALL  Y+KCG +  A RVF ++ K+N V+W+ ++     +     AL  F+ + 
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
             G  P   TF  +L  C     ++ G + +F  MK   G+   +     +V +    G 
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK--AGLESDLHVSNALVSMFVNCGD 564

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +  A     +M    + V W T++     HG + +A
Sbjct: 565 LMSAKNLFNDM-PKRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 178/329 (54%), Gaps = 4/329 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F+ ++D      N ++   +++     A+++  ++  S I+    TY  LL+   K  +
Sbjct: 68  VFADIKDTQ--KANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  GE+ ++   ++G +  +F+ N+L++MYA  G+   A ++F+ M E+D+ +WN ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +G   EA  L  +M  + V+PD  T VS+ +ACA+   +  GR  +  + K G   +
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V  AL++ + KCG I  A +VF  +  R+ V+W++++ GLA +G  K+A  LF+ ME 
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P +V FV +L AC+H   +++G     RMK E G   +I     ++ +  + G ++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSME 364

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            A E + +++   N V W  ++     HG
Sbjct: 365 DALE-VFDLVKGRNVVSWTAMIAGFAQHG 392



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 4/233 (1%)

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           K  C VF  +  +D    N+V+N  +  G+ NEA+ +   + S  ++    T  +L   C
Sbjct: 63  KGRCVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLC 120

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
            +   L  G R + ++ K G+  ++ + N L++ Y+KCG  I+A+++F +MR+++  SW+
Sbjct: 121 IKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWN 180

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            L+ G   +G  +EA +L ++M      P + TFV +L AC+    VD+G   +  +  +
Sbjct: 181 LLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL-K 239

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G    +     ++++  + G +  A +   N L   + V W +++     HG
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDN-LPTRDLVTWTSMITGLARHG 291


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/523 (43%), Positives = 343/523 (65%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS 154
           A ++F      ++ TWN MI  +        A +L  +M  +  ++PD  T   L+ A +
Sbjct: 165 ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +L ++  G+  HS +   G +  + V N+++ MY     ++ A +VF  + E+D+++W S
Sbjct: 225 QLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTS 284

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++G A +G   EAL LF++M    +E D  T+V + SACA+ GAL  G+  H  + K  
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFE 344

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           ++ ++ +  AL+D Y+KCG I  A +VFR MR RN  +W+ L+ GLA++G G++A+ LF 
Sbjct: 345 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 404

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +ME    +P +VTF+ +L ACSH G+VDEG + F+ MK+++ I P++EH+GC+VDLL RA
Sbjct: 405 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 464

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
             V  A  +I+NM +  N+V+W TLLGAC   GH  +AE     +++LEP   G YV+LS
Sbjct: 465 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLS 524

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           NLYA   +W +  ++R+ M  + ++KTPG S +EL   + +F  GDRSH QTE+I+AM+ 
Sbjct: 525 NLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIE 584

Query: 515 EITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
           E+T+++ L+ G+VP T NV  DIEEEEKE +L  HSEK+AIA  L++T  G+P+R+VKNL
Sbjct: 585 EMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNL 644

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH  +K+ SKVY+REIV RDRSRFHHFK+G CSC D+W
Sbjct: 645 RVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 237/415 (57%), Gaps = 13/415 (3%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSL 89
           P+S+   + SV       L+   +S  K KQ HA  +R  + L+NP     LI +  +S 
Sbjct: 4   PSSKCTKLISV-----DFLKTHCTSISKTKQAHALLLRTHL-LHNPLFSSKLISFLALSH 57

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  ++YA  +F+ +Q+P+ F  NTMIRGYA S NP  AV LY  M   G+  D +TYPF+
Sbjct: 58  SGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFV 117

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A ++L  V++G + H   ++NGF S +FV N+L+  Y   G    AC VF+  + RD+
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 210 VAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           V WN +IN   + G   +A  L  EM   + + PD  TMVSL  ACA+LG L  G+  H+
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           Y  ++GL +N+ VNNA+LD Y KC  I +AQ VF  +R+++ +SW++++ GLA +G+ +E
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQE 297

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL LF++M++      E+T VGVL AC+  G +D+G  Y   + D++ I   +     +V
Sbjct: 298 ALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALV 356

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           D+  + G +  A +  + M +  N   W  L+G   +HGH    E A S   Q+E
Sbjct: 357 DMYAKCGSIDLALQVFRRMRV-RNVFTWNALIGGLAMHGH---GEDAISLFDQME 407


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/581 (41%), Positives = 353/581 (60%), Gaps = 8/581 (1%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           R  ++LLQ C S + KL ++HA  + +G   N     K L +  VS+S  ++YA  +F  
Sbjct: 24  RAILSLLQGCNSMR-KLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHR 82

Query: 103 VQDPNIFTWNTMIRGYAESANPLL--AVELYSKM-HVSGIKPDTHTYPFLLKAISKLADV 159
           + +P    WN+MIRG+++S +PL   A+  Y+ M   S  +PDT+T+ FLLKA  +  + 
Sbjct: 83  IHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE 142

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
               + H   IR G++  V +  +L+  YA  G ++ A KVFE M  RDLV+WNS+I+ +
Sbjct: 143 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 202

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
              G   EAL ++ +M    V  DG+T+VSL S+CA +GAL +G + H +  +  L +N+
Sbjct: 203 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 262

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NAL+D Y+KCG + +A  +F  M KR+  +W++++VG  V+G G EA+  F  M + 
Sbjct: 263 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 322

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +TF+G+L  CSH G+V EG  YF  M  E+ + P I+H+GCMVDL GRAG +K+
Sbjct: 323 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 382

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E I++     + V+WRTLLG+C IH +  I E+A   L+QL    +GD VLLS +YA 
Sbjct: 383 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 442

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            +    V  +R+ +    +K TPG S +E+G++V  F + D+SHP + EI+  L E+  +
Sbjct: 443 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHR 502

Query: 520 LKLEGYVPRTENVFADIEEEEK----EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
             L GY     ++ A  E   +    E + SYHSEK+AIA+ L  T  GT + +VKNLRV
Sbjct: 503 ASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRV 562

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K +S  + REI+VRDR RFHHFK GHCSC+++W
Sbjct: 563 CRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/558 (42%), Positives = 343/558 (61%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA S++     N   L   L +YA   L   +  A  +F  +  P+   W  +I  Y
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTALITAY 147

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++ +   AV +      +G++PD+ T   +L A +++AD+  GE     A + G    V
Sbjct: 148 MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSV 207

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  + V +Y   G +  A +VF+ M  +D VAW +++ G+ASNG P EAL LF  M +E
Sbjct: 208 FVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAE 267

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++PD Y +    SAC  LGAL LGR+A   V      DN  +  AL+D Y+KCG  + A
Sbjct: 268 GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 327

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VF++MRK++ + W+ +++GL + G  K A  L  +ME  G    + TF+G+L +C+H 
Sbjct: 328 WVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHT 387

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G++ +G  YF  M   Y I P+IEH+GCMVDLL RAGL+++A++ + +M MP NAVI   
Sbjct: 388 GLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGA 447

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG C IH ++ +AE     L+ LEP +SG+YV+LSN+Y+   RW +  ++R  M  + V
Sbjct: 448 LLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 507

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K P  S VE   +V EF +GD+SHP +++I+  L E+  ++K  GY P TE V  D+E+
Sbjct: 508 EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 567

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEKE  L +HSEK+AIAF L+ T PG  +RV KNLRVC+DCH AIKL+S++  REI+VRD
Sbjct: 568 EEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRD 627

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFH F+DG CSC DYW
Sbjct: 628 NNRFHCFRDGSCSCNDYW 645



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 5/302 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++H     P   T P  LK+ S+L   +R GEQ H+ +++    +   V  SL+ +YA  
Sbjct: 60  RVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC 119

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +  A +VF+ M     V W ++I  +   G   EA+ + R   + G+ PD +T V + 
Sbjct: 120 GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 179

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +ACA +  LA G        + G++ +V V  A +D Y KCG +  A+ VF +MR ++AV
Sbjct: 180 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 239

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W  +V G A NG  +EAL+LF  M+  G  P      G L AC+  G +D G    + +
Sbjct: 240 AWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV 299

Query: 372 K-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
             DE+   P +     ++D+  + G   +A+   Q M    + ++W  ++    + GH  
Sbjct: 300 DWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMILGLGMTGHEK 356

Query: 431 IA 432
           IA
Sbjct: 357 IA 358


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/581 (41%), Positives = 353/581 (60%), Gaps = 8/581 (1%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           R  ++LLQ C S + KL ++HA  + +G   N     K L +  VS+S  ++YA  +F  
Sbjct: 6   RAILSLLQGCNSMR-KLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHR 64

Query: 103 VQDPNIFTWNTMIRGYAESANPLL--AVELYSKM-HVSGIKPDTHTYPFLLKAISKLADV 159
           + +P    WN+MIRG+++S +PL   A+  Y+ M   S  +PDT+T+ FLLKA  +  + 
Sbjct: 65  IHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE 124

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
               + H   IR G++  V +  +L+  YA  G ++ A KVFE M  RDLV+WNS+I+ +
Sbjct: 125 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 184

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
              G   EAL ++ +M    V  DG+T+VSL S+CA +GAL +G + H +  +  L +N+
Sbjct: 185 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 244

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NAL+D Y+KCG + +A  +F  M KR+  +W++++VG  V+G G EA+  F  M + 
Sbjct: 245 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 304

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +TF+G+L  CSH G+V EG  YF  M  E+ + P I+H+GCMVDL GRAG +K+
Sbjct: 305 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 364

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E I++     + V+WRTLLG+C IH +  I E+A   L+QL    +GD VLLS +YA 
Sbjct: 365 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 424

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            +    V  +R+ +    +K TPG S +E+G++V  F + D+SHP + EI+  L E+  +
Sbjct: 425 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHR 484

Query: 520 LKLEGYVPRTENVFADIEEEEK----EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
             L GY     ++ A  E   +    E + SYHSEK+AIA+ L  T  GT + +VKNLRV
Sbjct: 485 ASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRV 544

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K +S  + REI+VRDR RFHHFK GHCSC+++W
Sbjct: 545 CRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/522 (43%), Positives = 339/522 (64%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N   W +MI GY ++  P  A+ LY KM   G  PD  T   L+ A ++
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAE 192

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+ +G + HS       +    + ++LV+MYA  G +K A +VF+ +S++D+ AW+++
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSAL 252

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I G+  N +  EAL LFRE+A    + P+  T++++ SACA+LG L  GR  H Y+ +  
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQ 312

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V++NN+L+D +SKCG I AA+R+F  M  ++ +SW+++V G A++G G+EAL  F+
Sbjct: 313 KGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFR 372

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+     P E+TF+GVL ACSH G+V EG   F  ++  YG+  K EH+GCMVDLL RA
Sbjct: 373 LMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRA 432

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           GL+ +A E+I+ M + P+  IW ++LGAC ++ +  + E A   LL+LEP + G Y+LLS
Sbjct: 433 GLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLS 492

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  + W  V++VR  M ++ ++KTPG S V + N    F  GD SHP+  EI  ML 
Sbjct: 493 NIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLR 552

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +KLKL GYV  T  V  +I++ +KE+++S HSEK+A+ + L+ +  G  + ++KNLR
Sbjct: 553 QVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLR 612

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH  IKL+SK+Y R+I +RDR+RFHHFKDG CSCRDYW
Sbjct: 613 VCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 207/376 (55%), Gaps = 12/376 (3%)

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM- 134
           P L K + + +   S  + YA+++F+H ++ ++ TWN+M+R +  S  P  A++ Y++M 
Sbjct: 11  PSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEML 70

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
             S   PD  T+P LLK  + L + ++G+  H   ++    S ++++ +L++MYAA G +
Sbjct: 71  ERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDL 130

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           K A  +FE M  R+ V W S+I+G+  N  PNEAL L+++M  +G  PD  TM +L SAC
Sbjct: 131 KSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           AEL  L +G + H+++ ++ +     + +AL++ Y+KCG +  A++VF ++  ++  +WS
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWS 250

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
            L+ G   N    EAL+LF+E+  G  + P EVT + V+ AC+  G ++ G     Y  R
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GH 428
            +  + +         ++D+  + G +  A     +M    + + W +++    +H  G 
Sbjct: 311 TQKGHSVSLN----NSLIDMFSKCGDIDAAKRIFDSM-SYKDLISWNSMVNGFALHGLGR 365

Query: 429 SAIAEIARSTLLQLEP 444
            A+A+        L+P
Sbjct: 366 EALAQFRLMQTTDLQP 381


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/598 (42%), Positives = 372/598 (62%), Gaps = 20/598 (3%)

Query: 31  PASQENP--ITSVVRK-CITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           P S  NP  + S+ +K  I+LLQ    SKH  ++  +HA  IR+G    +P    ++++ 
Sbjct: 18  PNSNSNPKSLKSLDQKQIISLLQ---RSKHINQVLPIHAQLIRNGHS-QDP----FMVFE 69

Query: 86  IV---SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           ++   S    + YA  IF +  +PN++ +  +I G+  S N   A++LYS+M    I PD
Sbjct: 70  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPD 129

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +    +LKA      +R G + HS A++ G  S   V+  ++ +Y   G + DA +VFE
Sbjct: 130 NYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFE 189

Query: 203 LMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
            M E    +D V W ++I+GF  N + N AL  FR M  E V P+ +T+V + SAC++LG
Sbjct: 190 EMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 249

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL +GR  H+Y+ K  +  N+ V NAL++ YS+CG I  AQ VF EM+ R+ ++++T++ 
Sbjct: 250 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 309

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           GL++NG  ++A+ELF+ M      P  VTFVGVL ACSH G+VD GF  F  M  +YG+ 
Sbjct: 310 GLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVE 369

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
           P+IEH+GCMVDLLGR G +++AY+ I+ M M P+ ++  TLL AC +H +  + E     
Sbjct: 370 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKV 429

Query: 439 LLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
           L       SG YVLLS++YA   +W    +VR  M +  ++K PG S +E+ N + EF +
Sbjct: 430 LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 489

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD  HP+ E I+  L E+ + L+LEGY P  E V  DIE+ EKE AL+ HSE++AI + L
Sbjct: 490 GDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGL 549

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++T P T +RV+KNLRVC DCH AIKLI+K+  R++VVRDR+RFH+F++G CSC DYW
Sbjct: 550 ISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/521 (44%), Positives = 326/521 (62%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +W  MIRGYAE++N   A  L++ M   GI+PD  TY  ++ A + 
Sbjct: 317 ARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACAS 376

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            AD+ +  + HS  +R GF + + V  +LVHMYA  G +KDA +VF+ MS RD+V+W+++
Sbjct: 377 SADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAM 436

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +  NG   EA   F  M    VEPD  T ++L +AC  LGAL LG   +T   K  L
Sbjct: 437 IGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADL 496

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V NAL++   K G I  A+ +F  M +R+ V+W+ ++ G +++G  +EAL+LF  
Sbjct: 497 VSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDR 556

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M    F P  VTFVGVL ACS  G V+EG  +F  + D  GI+P +E +GCMVDLLGRAG
Sbjct: 557 MLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAG 616

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A   I  M + PN+ IW TLL AC I+G+  +AE A    L  EP     YV LS+
Sbjct: 617 ELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSH 676

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W NV +VR+ M    V+K  G + +E+  ++  F + DRSHPQ  EI+A LA 
Sbjct: 677 MYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELAR 736

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +   +K EGY+P T+NV  ++ E+EKE+A+SYHSEK+AIA+ +++   G P+R+ KNLRV
Sbjct: 737 LMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRV 796

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISKV  REI+ RD SRFHHFK+G CSC DYW
Sbjct: 797 CGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 205/387 (52%), Gaps = 8/387 (2%)

Query: 46  ITLLQVCAS-SKHKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L  C+S +  KL K+ HA  I+ G  +++  +G  L+   V     M  A  +F  +
Sbjct: 166 LIVLDACSSPAGLKLGKEFHAQVIKVGF-VSDFRIGTALVSMYVK-GGSMDGARQVFDGL 223

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ T+N MI GYA+S +   A +L+ +M   G KP+  ++  +L   S    +  G+
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGK 283

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H+  +  G    V V  +L+ MY   G ++ A +VF+ M  RD+V+W  +I G+A N 
Sbjct: 284 AVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENS 343

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              +A  LF  M  EG++PD  T + + +ACA    L+L R  H+ V + G   ++ V+ 
Sbjct: 344 NIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDT 403

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y+KCG I  A++VF  M +R+ VSWS ++     NG G+EA E F  M+     P
Sbjct: 404 ALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEP 463

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             VT++ +L AC H G +D G   Y + +K +  ++  I     ++++  + G +++A  
Sbjct: 464 DVVTYINLLNACGHLGALDLGMEIYTQAIKAD--LVSHIPVGNALINMNVKHGSIERARY 521

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHS 429
             +NM+   + V W  ++G  ++HG++
Sbjct: 522 IFENMV-QRDVVTWNVMIGGYSLHGNA 547



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 12/390 (3%)

Query: 43  RKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           R  + L Q C   +     KQV    I+ G  LN  +L   +   + S+   M  A   F
Sbjct: 62  RTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLI--KLHSICGNMLEARQTF 119

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V++  + TWN +I GYA+  +   A  L+ +M    ++P   T+  +L A S  A ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           +G++ H+  I+ GF S   +  +LV MY   G +  A +VF+ + +RD+  +N +I G+A
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +G   +A  LF  M  EG +P+  + +S+   C+   ALA G+  H      GL D+V 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V  AL+  Y  CG I  A+RVF +M+ R+ VSW+ ++ G A N   ++A  LF  M+  G
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 341 FVPGEVTFVGVLYACSHCG---MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             P  +T++ ++ AC+      +  E  S   R     G    +     +V +  + G +
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRA----GFGTDLLVDTALVHMYAKCGAI 415

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           K A +    M    + V W  ++GA   +G
Sbjct: 416 KDARQVFDAM-SRRDVVSWSAMIGAYVENG 444



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 120/215 (55%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D+ TY  L +    L D  +G+Q     I++G +  ++  N+L+ +++  G++ +A + F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + +  + +V WN++I G+A  G   EA  LFR+M  E +EP   T + +  AC+    L 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           LG+  H  V KVG   +  +  AL+  Y K G +  A++VF  + KR+  +++ ++ G A
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            +G G++A +LF  M+  GF P  ++F+ +L  CS
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 359/636 (56%), Gaps = 54/636 (8%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           AS  +P  S V   + LL  C    +K      F I+    L    +G  +    + LSF
Sbjct: 101 ASSSDPFQSFV-IFLDLLDKCEDLPNKF--TFPFVIKAASELKASRVGTAVHGMAIKLSF 157

Query: 92  PM------------------SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
            M                  S A  +F  +   ++ +WN+MI  +A+   P  A+EL+ K
Sbjct: 158 GMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLK 217

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M    + P++ T   +L A +K  D+  G    S   R G +  + + N+++ MY   G 
Sbjct: 218 MERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGS 277

Query: 194 VKDACKVFELMSERD-------------------------------LVAWNSVINGFASN 222
           V DA K+F+ M ERD                               + AWN +I+ +  N
Sbjct: 278 VDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQN 337

Query: 223 GKPNEALTLFREMA-SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           GKP EAL +F E+  S+  +PD  T+VS  SACA+LGA+ LG   H Y+ + G+  N ++
Sbjct: 338 GKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHL 397

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            ++L+D Y+KCG +  A  VF  + +R+   WS ++ GL ++G GK A++LF EM+    
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKV 457

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  VTF  VL ACSH G+VDEG  +F  M+  YG++P+++H+ CMVD+LGRAG +++A 
Sbjct: 458 KPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAM 517

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E I  M   P+A +W  LLGAC++H +  + E+A   LL+LEP++ G  VLLSN+YA   
Sbjct: 518 ELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTG 577

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW  V E+R+ M    +KK PG S +E    V EF +GD +HP +  I++ L EI  KLK
Sbjct: 578 RWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLK 637

Query: 522 LEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
             GY P   ++   IEE++ KE ALS HSEK+AIAF LV  AP  P+RVVKNLR+C DCH
Sbjct: 638 SVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCH 697

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              KL+S+VY R+I++RDR RFHHF+DGHCSC DYW
Sbjct: 698 AFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 219/420 (52%), Gaps = 36/420 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++ +  C+SSK +LK+VHA  +R G+  +     K    + +S    + YA N+F  +  
Sbjct: 29  LSTIDKCSSSK-QLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 106 PNIFTWNTMIRGYAESANPLLAVELY-SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           PN++TWNT+IR YA S++P  +  ++   +      P+  T+PF++KA S+L   R+G  
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTA 147

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H +AI+  F   +++ NSLV  Y A G +  A ++F+ +S +D+V+WNS+I+ FA    
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           P +AL LF +M  E V P+  TMV + SACA+   L  GR   +Y+ + G+  ++ + NA
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA----------------------- 321
           +LD Y+KCG +  AQ++F EM +R+  SW+ ++ G A                       
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAW 327

Query: 322 --------VNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
                    NG  KEAL +F E+++     P EVT V  L AC+  G +D G      +K
Sbjct: 328 NVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIK 387

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            E GI+        +VD+  + G +++A E   + +   +  +W  ++    +HG    A
Sbjct: 388 RE-GIVLNCHLISSLVDMYAKCGSLEKALEVFYS-VEERDVYVWSAMIAGLGMHGRGKAA 445



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 10/265 (3%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMSE 206
           +L  I K +  +  ++ H+  +R G     F  + L    A  +F  +  A  +F+ + +
Sbjct: 28  ILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRR 265
            +L  WN++I  +AS+  P ++  +F ++  +  + P+ +T   +  A +EL A  +G  
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTA 147

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    K+    ++ + N+L+ FY  CG +  A+R+F+ +  ++ VSW++++   A    
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            ++ALELF +ME    +P  VT VGVL AC+    ++ G    SY +R     GI   + 
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERK----GIKVDLT 263

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNM 407
               M+D+  + G V  A +    M
Sbjct: 264 LCNAMLDMYTKCGSVDDAQKLFDEM 288


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/607 (42%), Positives = 368/607 (60%), Gaps = 29/607 (4%)

Query: 28  HSTPASQENPITSVV--RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           H  PA+  +  T+    R+ ++L + C S   +LKQ+HAF++R   P     L  Y    
Sbjct: 13  HIQPANSPSASTAGNHHRRILSLAETC-SDMSQLKQLHAFTLRTTYPDEPATLFLYGKIL 71

Query: 86  IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPD 142
            +S SF  ++YA  +F  +++ + F WNT+IR  A + +    A  LY KM   G   PD
Sbjct: 72  QLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPD 131

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            HT+PF+LKA + +  +  G+Q H   +++GF   V+V N L+H Y + G +  A KVF+
Sbjct: 132 KHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFD 191

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M ER LV+WNS+I+     G+ + AL LFR+M  +  EPDGYTM S+ SACA LG+L+L
Sbjct: 192 EMPERSLVSWNSMIDALVRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSL 250

Query: 263 GRRAHTYVWK---VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           G  +H ++ +   V ++ +V + N+L++ Y KCG +  A++VF+ MRK +  SW+ +++G
Sbjct: 251 GTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILG 310

Query: 320 LAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            A +G  +EA+  F  M  E     P  VTFV +L AC+H GMV++G  YF  M  EYGI
Sbjct: 311 FATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGI 370

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIA 435
            P +EH+GC++DLL RAG + +A + + +M M P+AVIWR+LL AC   G S     EIA
Sbjct: 371 EPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 430

Query: 436 RSTLLQLEPKHS------GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
           R+ +  +E   S      G YVLLS +YA   RW +V  VR+ M    ++K PG S +E+
Sbjct: 431 RNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEI 490

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
                EFF GD SHPQT++I+  L  I  +L+         ++     +  KE +L  HS
Sbjct: 491 NGISNEFFAGDTSHPQTKQIYQQLKVIDDRLR---------SIVDATNDSSKEYSLRLHS 541

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           E++AIAF L++  P TP+R+ KNLRVC+DCH   KLISKV++ EI+VRDR RFHHFKDG 
Sbjct: 542 ERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGS 601

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 602 CSCLDYW 608


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/640 (38%), Positives = 355/640 (55%), Gaps = 71/640 (11%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           C  +L V   +K  LK++H+  +       NP LG  L+ A  +   P  Y  +IF  + 
Sbjct: 41  CNKILDVNPDAK-TLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEP-CYTRHIFDEIT 98

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D N+  +N MIR Y  +     A+ ++  M   G  PD +TYP +LKA S   ++ +G Q
Sbjct: 99  DKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQ 158

Query: 165 THSVAIRNGFESLVFVQN-------------------------------SLVHMYAAFGH 193
            H   ++ G +  +++ N                               S+V  YA  G 
Sbjct: 159 IHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGR 218

Query: 194 VKDACKV-------------------------------------FELMSERDLVAWNSVI 216
             DA K+                                     F  + E+ L++WN +I
Sbjct: 219 FNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMI 278

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
             + +N  PNEA+ L+ +M   GVEPD  ++ S+  AC +L A  LGRR H YV +  L 
Sbjct: 279 AVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLR 338

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            N+ + NAL+D Y+KCG +  A+ VF +M  R+ VSW++++    ++G GK+A+ LFK+M
Sbjct: 339 PNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKM 398

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              GF P  + FV VL ACSH G+VDEG   F  M  EYGI P IEH+ CMVDLLGRAG 
Sbjct: 399 RDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGK 457

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           + +AY   + M M PN  +W +LL AC ++    IA +A   L QL P+ SG YVLLSN+
Sbjct: 458 IDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNI 517

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA   RW +V+ VR  M  + +KK PG+S VE+ + V+ F  GD+SH Q++EI+  L  +
Sbjct: 518 YAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVL 577

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             ++K  GY+P T++   D+EEE+KE  L+ HSEK+AI F ++NT PG+ +R+ KN+RVC
Sbjct: 578 VGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVC 637

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH+A KLISK+  REI++RD  RFHHF+DG CSC DYW
Sbjct: 638 GDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/609 (40%), Positives = 360/609 (59%), Gaps = 38/609 (6%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +C  LL  C S + ++KQVHA  I  G+ L+ P     L+  + S+  P+SYAH +F H 
Sbjct: 3   RCDFLLSSCKSFR-QIKQVHARLITTGLILH-PIPTNKLLKQLSSIFAPISYAHMVFDHF 60

Query: 104 QDPNIFTWNTMIR--GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
             P++F +NT+I+   ++ +++     +  S +    + P+ +++ F  K       V  
Sbjct: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLE 120

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           GEQ    AI+ G E+ +FV N+L+ MY     V DA KVF+    RD+ +WN +++G+A 
Sbjct: 121 GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYAR 180

Query: 222 NGKPNEALTLFREMA-------------------------------SEGVEPDGYTMVSL 250
            GK +EA  LF EM                                ++G+ P+ YT+ S 
Sbjct: 181 LGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASS 240

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE--MRKR 308
            +ACA L AL  GR  H Y+ K  +  N  +   L+D Y+KCG +  A ++F      KR
Sbjct: 241 LAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKR 300

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
               W+ ++ G AV+G  KEA+E+F++M+I    P +VTFV +L ACSH   V+EG  YF
Sbjct: 301 KVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYF 360

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M   Y + P++EH+GC+VDLLGRAG +K+A E I +M + P+  IW  LL AC IH  
Sbjct: 361 ESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKD 420

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
           + + E     + +L+P H G +VLL+N+Y+    W   + +R  + +   KKTPG S +E
Sbjct: 421 AEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIE 480

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE-EEKEDALSY 547
           L     +F +GDRSHPQT++++  L E+  KLK+ GY+P +  V  DI++ E++E AL  
Sbjct: 481 LNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLK 540

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF L+NT P TP+R+VKNLRVC+DCHLAIK ISKVY REI+VRDR R+HHFKD
Sbjct: 541 HSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKD 600

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 601 GTCSCNDYW 609


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/586 (43%), Positives = 360/586 (61%), Gaps = 17/586 (2%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV---SLSFPMSYAHNI 99
           R+ +  L  C +   +LKQ+HA +IR     ++P+   + +Y+ +   S    + YA  +
Sbjct: 27  RRLLLFLNSC-TCISQLKQLHAQTIR-TTSSHHPN--TFFLYSRILHFSSLHDLRYAFRV 82

Query: 100 FSHVQDPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLA 157
           F  +++PN F WN +IR  A S +    A+ LY +M   G +  D HT+PF+LKA + L 
Sbjct: 83  FHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLF 142

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  GEQ H+  ++ GF+S V++ NSLVH YA    +  A  VF+ MSER LV+WN VI+
Sbjct: 143 ALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVID 202

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            F   G+ + AL LF EM  +  EPDGYT+ S+ +ACA +G+L+LG  AH ++ K   +D
Sbjct: 203 AFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDAD 261

Query: 278 NVN---VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            VN   +N +L+D Y KCG +  A ++F  M KR+  SW+++++G + +G    ALE F 
Sbjct: 262 RVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFG 321

Query: 335 EM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            M      +P  +TFVGVL AC+H G+V EG  YF  M  EY I P++EH+GC+VDLL R
Sbjct: 322 CMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLAR 381

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYV 451
           AGL+ +A + + NM M P+ VIWR+LL AC     G     E+AR  L       SG YV
Sbjct: 382 AGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYV 441

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLS +YA   RW +V  VR+ M  + V K PG S +E+     EFF GD SHPQTEEI++
Sbjct: 442 LLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYS 501

Query: 512 MLAEITKKLKLEGYVPRTENV-FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            L  I ++++  GY P +      D   + K+ +L  HSE++AIAF L+ T PG P+R+ 
Sbjct: 502 ALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIF 561

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC +CH   KLIS+V++REI+VRDR RFHHFKDG CSC DYW
Sbjct: 562 KNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/521 (42%), Positives = 329/521 (63%), Gaps = 5/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   N+ +W TMI  Y++      A+EL   M    ++P+ +TY  +L++ + 
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           ++DVRM    H   I+ G ES VFV+++L+ ++A  G  +DA  VF+ M   D + WNS+
Sbjct: 175 MSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA N + + AL LF+ M   G   +  T+ S+  AC  L  L LG +AH ++  V  
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKY 289

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +NNAL+D Y KCG +  A RVF +M++R+ ++WST++ GLA NG+ +EAL+LF+ 
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +T VGVL+ACSH G++++G+ YF+ MK  YGI P  EH+GCM+DLLG+AG
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAG 409

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +  A + +  M   P+AV WRTLLGAC +  +  +AE A   ++ L+P+ +G Y LLSN
Sbjct: 410 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  Q+W +V+E+R  M    +KK PG S +E+  ++  F +GD SHPQ  E+   L +
Sbjct: 470 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQ 529

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +L   GYVP T  V  D+E E+ ED+L +HSEK+A+AF L+       +R+ KNLR+
Sbjct: 530 LIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRI 589

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  KL SK+  R IV+R   R+HHF+DG CSC DYW
Sbjct: 590 CGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A++    +   G+  D+ TY  L+K       V  G         NG   ++F+ N L++
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY  F  + DA ++F+ M +R++++W ++I+ ++      +AL L   M  + V P+ YT
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  +C  +  +   R  H  + K GL  +V V +AL+D ++K G    A  VF EM 
Sbjct: 165 YSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF- 365
             +A+ W++++ G A N     ALELFK M+  GF+  + T   VL AC+   +++ G  
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           ++   +K +  ++        +VD+  + G ++ A   + N +   + + W T++     
Sbjct: 282 AHVHIVKYDQDLILN----NALVDMYCKCGSLEDALR-VFNQMKERDVITWSTMISGLAQ 336

Query: 426 HGHS 429
           +G+S
Sbjct: 337 NGYS 340


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/563 (41%), Positives = 351/563 (62%), Gaps = 9/563 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L+Q HA  +  G   +   L K L  +  + S  ++Y   +F  V DP+ F +N++I+ 
Sbjct: 25  RLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGS--IAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            ++    L AV  Y +M +S I P T+T+  ++KA + L+ + +G   HS    +G+ S 
Sbjct: 83  SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            FVQ +L+  YA     + A KVF+ M +R +VAWNS+I+G+  NG  NEA+ +F +M  
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             VEPD  T VS+ SAC++LG+L  G   H  +   G++ NV +  +L++ +S+CG +  
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGR 262

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF  M + N V W+ ++ G  ++G+G EA+E+F  M+  G VP  VTFV VL AC+H
Sbjct: 263 ARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAH 322

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNA 413
            G++DEG S F  MK EYG++P +EH  CMVD+ GR GL+ +AY++++ +    L+P   
Sbjct: 323 AGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPA-- 380

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            +W  +LGAC +H +  +       L+  EP++ G YVLLSN+YA   R   V+ VR  M
Sbjct: 381 -VWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
           ++  +KK  G+S +++ NR + F MGD+SHP+T EI+  L E+  + K  GY P  E+  
Sbjct: 440 IQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAM 499

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            ++E EE+E AL YHSEK+A+AF L+ T  G  +R+VKNLR+C DCH AIK IS V +RE
Sbjct: 500 HELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNRE 559

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRD+ RFHHF++G CSC DYW
Sbjct: 560 IIVRDKLRFHHFREGSCSCSDYW 582



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 2/270 (0%)

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +R  +Q H+  +  G      +   L+ +  A G +    ++F  +S+ D   +NS+I  
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            +  G   +A+  +R M    + P  YT  S+  ACA+L  L +G   H++V+  G + +
Sbjct: 83  SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             V  AL+ FY+K      A++VF EM +R+ V+W++++ G   NG   EA+E+F +M  
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P   TFV VL ACS  G +D G  +        GI   +     +V++  R G V 
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFG-CWLHDCIVGSGITMNVVLATSLVNMFSRCGDVG 261

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +A     +M+   N V+W  ++    +HG+
Sbjct: 262 RARAVFYSMI-EGNVVLWTAMISGYGMHGY 290


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/606 (39%), Positives = 357/606 (58%), Gaps = 37/606 (6%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIY-------------------- 84
           +L + CA SK  H+ KQ+HA +++  + L+ P +   LI+                    
Sbjct: 132 SLFKSCAKSKATHEAKQLHAHALKLALHLH-PHVHTSLIHMYSQVGELRHARLVFDKSTL 190

Query: 85  --AIVSLSFPMSY--------AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
             A+   +    Y        A  +F  +   ++ +WN MI GY +S     A+  +++M
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
             + + P+  T   +L A   L  + +G+   S     GF   + + N+LV MY+  G +
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A K+F+ M ++D++ WN++I G+       EAL LF  M  E V P+  T +++  AC
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370

Query: 255 AELGALALGRRAHTYVWK----VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
           A LGAL LG+  H Y+ K     G  +NV++  +++  Y+KCG +  A++VFR M  R+ 
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
            SW+ ++ GLA+NG  + AL LF+EM   GF P ++TFVGVL AC+  G V+ G  YF  
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M  +YGI PK++H+GCM+DLL R+G   +A   + NM M P+  IW +LL AC IHG   
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVE 550

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
             E     L +LEP++SG YVLLSN+YA   RW +V ++R  +  + +KK PG + +E+ 
Sbjct: 551 FGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEID 610

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
             V EF +GD+ HPQ+E I  ML E+ + L+  G+VP T  V  D++EE KE AL+ HSE
Sbjct: 611 GVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSE 670

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L++T PG+ +R+VKNLRVC +CH A KLISK+++REI+ RDR+RFHHFKDG C
Sbjct: 671 KLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFC 730

Query: 611 SCRDYW 616
           SC D W
Sbjct: 731 SCNDRW 736



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 208/410 (50%), Gaps = 37/410 (9%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS--HVQDPNIFTWNTMIR 116
           LKQ+H+  I+ G+        K + +  +S S  +SYA ++F   H Q PNIF WNT+IR
Sbjct: 41  LKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIR 100

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            ++ +  P  ++ L+S+M  SG+ P++HT+P L K+ +K       +Q H+ A++     
Sbjct: 101 AHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHL 160

Query: 177 LVFVQNSLVHMYAAFG-------------------------------HVKDACKVFELMS 205
              V  SL+HMY+  G                               HV DA ++F+ + 
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIP 220

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            +D+V+WN++I G+  +G+  EAL  F  M    V P+  TMVS+ SAC  L +L LG+ 
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
             ++V   G   N+ + NAL+D YSKCG I  A+++F  M  ++ + W+T++ G      
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSL 340

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            +EAL LF+ M      P +VTF+ VL AC+  G +D G    +Y  +     G +  + 
Sbjct: 341 YEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVS 400

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +  ++ +  + G V+ A +  ++M    +   W  ++    ++GH+  A
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFRSM-GSRSLASWNAMISGLAMNGHAERA 449



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 39/309 (12%)

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD---ACKVFELMSE 206
           L  ++K  D+   +Q HS+ I++G  + +F Q+ L+  + A    +D   A  +F  +  
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSIHH 87

Query: 207 R--DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           +  ++  WN++I   +    P  +L LF +M   G+ P+ +T  SLF +CA+  A    +
Sbjct: 88  QPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAK 147

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGI------------------------------ 294
           + H +  K+ L  + +V+ +L+  YS+ G                               
Sbjct: 148 QLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEG 207

Query: 295 -IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A+R+F E+  ++ VSW+ ++ G   +G  +EAL  F  M+     P + T V VL 
Sbjct: 208 HVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           AC H   ++ G      ++D  G    ++    +VD+  + G +  A +    M    + 
Sbjct: 268 ACGHLRSLELGKWIGSWVRDR-GFGKNLQLVNALVDMYSKCGEIGTARKLFDGM-EDKDV 325

Query: 414 VIWRTLLGA 422
           ++W T++G 
Sbjct: 326 ILWNTMIGG 334


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/558 (42%), Positives = 343/558 (61%), Gaps = 4/558 (0%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
            +Q+HA S++     N   L   L +YA   L   +  A  +F  +  P+   W  +I  Y
Sbjct: 546  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTALITAY 602

Query: 119  AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             ++ +   AV +      +G++PD+ T   +L A +++AD+  GE     A + G    V
Sbjct: 603  MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSV 662

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            FV  + V +Y   G +  A +VF+ M  +D VAW +++ G+ASNG P EAL LF  M +E
Sbjct: 663  FVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAE 722

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            G++PD Y +    SAC  LGAL LGR+A   V      DN  +  AL+D Y+KCG  + A
Sbjct: 723  GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 782

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              VF++MRK++ + W+ +++GL + G  K A  L  +ME  G    + TF+G+L +C+H 
Sbjct: 783  WVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHT 842

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            G++ +G  YF  M   Y I P+IEH+GCMVDLL RAGL+++A++ + +M MP NAVI   
Sbjct: 843  GLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGA 902

Query: 419  LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
            LLG C IH ++ +AE     L+ LEP +SG+YV+LSN+Y+   RW +  ++R  M  + V
Sbjct: 903  LLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 962

Query: 479  KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            +K P  S VE   +V EF +GD+SHP +++I+  L E+  ++K  GY P TE V  D+E+
Sbjct: 963  EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 1022

Query: 539  EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            EEKE  L +HSEK+AIAF L+ T PG  +RV KNLRVC+DCH AIKL+S++  REI+VRD
Sbjct: 1023 EEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRD 1082

Query: 599  RSRFHHFKDGHCSCRDYW 616
             +RFH F+DG CSC DYW
Sbjct: 1083 NNRFHCFRDGSCSCNDYW 1100



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 5/302 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++H     P   T P  LK+ S+L   +R GEQ H+ +++    +   V  SL+ +YA  
Sbjct: 515 RVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC 574

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +  A +VF+ M     V W ++I  +   G   EA+ + R   + G+ PD +T V + 
Sbjct: 575 GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 634

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +ACA +  LA G        + G++ +V V  A +D Y KCG +  A+ VF +MR ++AV
Sbjct: 635 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 694

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W  +V G A NG  +EAL+LF  M+  G  P      G L AC+  G +D G    + +
Sbjct: 695 AWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV 754

Query: 372 K-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
             DE+   P +     ++D+  + G   +A+   Q M    + ++W  ++    + GH  
Sbjct: 755 DWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMILGLGMTGHEK 811

Query: 431 IA 432
           IA
Sbjct: 812 IA 813


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/512 (42%), Positives = 323/512 (63%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +P+I TWN ++ G+ +  +   A+E + +MH  G+ P+T T    L A  ++ ++++G++
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   +RN  E    V ++L+ MY+    ++ AC VF  +S RD+V WNS+I+  A +G+
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
              AL L REM    VE +  TMVS   AC++L AL  G+  H ++ + GL     + N+
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y +CG I  ++R+F  M +R+ VSW+ ++    ++GFG +A+ LF++    G  P 
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            +TF  +L ACSH G+++EG+ YFK MK EY + P +E + CMVDLL RAG   +  E+I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + M   PNA +W +LLGAC IH +  +AE A   L +LEP+ SG+YVL++N+Y+   RW 
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +  ++R  M +  V K PG S +E+  ++  F +GD SHP  E+I A +  +   +K  G
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIG 880

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T  V  D++E+EKE +L  HSEKIA+AF L++T  GTP+R++KNLRVC DCH A K
Sbjct: 881 YVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATK 940

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISKV  R+I++RD  RFHHF DG CSC DYW
Sbjct: 941 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 13/327 (3%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A  L S M ++        Y  +L+   KL ++R+G Q H+  + NG +   F+ + L+ 
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLE 132

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           +Y   G V+DA ++F+ MSER++ +W +++  +   G   E + LF  M +EGV PD + 
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 192

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
              +F AC+EL    +G+  + Y+  +G   N  V  ++LD + KCG +  A+R F E+ 
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 252

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            ++   W+ +V G    G  K+AL+   +M++ G  P +VT+  ++   +  G  +E   
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASK 312

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM---PPNAVIWRTLLGAC 423
           YF  M       P +  +  ++    + G   +A    + M++    PN++   + + AC
Sbjct: 313 YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372

Query: 424 T----------IHGHSAIAEIARSTLL 440
           T          IHG+    E   S LL
Sbjct: 373 TNLSLLRHGREIHGYCIKVEELDSDLL 399



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 142/260 (54%), Gaps = 4/260 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++H + +R+ + L+   +G  LI ++ S    +  A ++FS +   ++  WN++I   A
Sbjct: 519 KEIHGYVLRNHIELST-GVGSALI-SMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +S   + A++L  +M++S ++ +T T    L A SKLA +R G++ H   IR G ++  F
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF 636

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           + NSL+ MY   G ++ + ++F+LM +RDLV+WN +I+ +  +G   +A+ LF++  + G
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 696

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           ++P+  T  +L SAC+  G +  G +    +  +  +   V     ++D  S+ G     
Sbjct: 697 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 756

Query: 299 QRVFREMR-KRNAVSWSTLV 317
                +M  + NA  W +L+
Sbjct: 757 LEFIEKMPFEPNAAVWGSLL 776



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 181/412 (43%), Gaps = 54/412 (13%)

Query: 49  LQVCASSKHKLKQVH----AFSIRHGVPLNNPDLGKYL---IYAIVSLSFPMSYAHNIFS 101
           +++ AS   K ++++     F +   + +N  D+ ++L   +  +   +  +  A  +F 
Sbjct: 89  IEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFD 148

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            + + N+F+W  ++  Y    +    ++L+  M   G++PD   +P + KA S+L + R+
Sbjct: 149 KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  +   +  GFE    V+ S++ M+   G +  A + FE +  +D+  WN +++G+ S
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
            G+  +AL    +M   GV+PD  T  ++ S  A+ G       A  Y  ++G       
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQF---EEASKYFLEMG------- 318

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
              L DF                  K N VSW+ L+ G   NG+  EAL +F++M + G 
Sbjct: 319 --GLKDF------------------KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF-------GCMVDLLGRA 394
            P  +T    + AC++  ++  G       ++ +G   K+E           +VD   + 
Sbjct: 359 KPNSITIASAVSACTNLSLLRHG-------REIHGYCIKVEELDSDLLVGNSLVDYYAKC 411

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEP 444
             V+ A      M+   + V W  +L    + G    AI  ++      +EP
Sbjct: 412 RSVEVARRKF-GMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEP 462


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/538 (42%), Positives = 334/538 (62%), Gaps = 4/538 (0%)

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           LI    S  F +  A  +F  +   ++ +WN MI GYA+S     A+  + +M  + + P
Sbjct: 200 LITGYASKGF-LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTP 258

Query: 142 DTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           +  T   +L A ++  + +++G    S     G  S + + N L+ MY   G +++A  +
Sbjct: 259 NVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNL 318

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           FE + ++++V+WN +I G+       EAL LFR M    ++P+  T +S+  ACA LGAL
Sbjct: 319 FEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGAL 378

Query: 261 ALGRRAHTYVWK--VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            LG+  H YV K    + + V +  +L+D Y+KCG +  A+R+F  M  ++  +W+ ++ 
Sbjct: 379 DLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMIS 438

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           G A++G    AL LF  M   GFVP ++TFVGVL AC H G++  G  YF  M  +Y + 
Sbjct: 439 GFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVS 498

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
           PK+ H+GCM+DL GRAGL  +A   ++NM M P+  IW +LLGAC IH    +AE     
Sbjct: 499 PKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKH 558

Query: 439 LLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
           L +LEP++   YVLLSN+YA   RW +V ++R  +   R+KK PG S +E+ + V EF +
Sbjct: 559 LFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLV 618

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD+ HPQ+ EI+ ML EI  +L+  G+VP T  V  D++EE KE  LS+HSEK+AIAF L
Sbjct: 619 GDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGL 678

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++T PGT +R++KNLRVC +CH A KLISK+++REI+ RDR+RFHHFKDG CSC+DYW
Sbjct: 679 ISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/420 (30%), Positives = 220/420 (52%), Gaps = 35/420 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +TLL  C + +  LKQ+H+  I+ G+   +  L K + +  VS    +SYA ++F  +++
Sbjct: 32  LTLLSNCKTLQ-TLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRN 90

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN   WN MIRG + S +P LA+E Y  M  SG +P+ +T+P + K+ +K+     G+Q 
Sbjct: 91  PNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQV 150

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF------------------------ 201
           H+  ++ G E   FV  SL++MYA  G + +A  VF                        
Sbjct: 151 HAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFL 210

Query: 202 ----ELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
               EL  E   RD+V+WN++I+G+A +G+  EA+  F EM    V P+  TM+S+ SAC
Sbjct: 211 DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSAC 270

Query: 255 AELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           A+ G +L LG    +++   GL  N+ + N L+D Y KCG +  A  +F +++ +N VSW
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSW 330

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-FSYFKRMK 372
           + ++ G       KEAL LF+ M      P +VTF+ +L AC++ G +D G + +    K
Sbjct: 331 NVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDK 390

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +   +   +  +  ++D+  + G +  A + I + +   +   W  ++    +HGH+  A
Sbjct: 391 NMKSMKNTVALWTSLIDMYAKCGDLAVA-KRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/573 (42%), Positives = 359/573 (62%), Gaps = 7/573 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LLQ C SS  ++KQ+ A  I +G    +    K L    +S    +SYA +IF ++  P+
Sbjct: 7   LLQKC-SSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPS 65

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVS-GI-KPDTHTYPFLLKAISKLADVRMGEQT 165
              WN +IRG A S++P  AV  Y  M  S G+ + D  T  F LKA ++        Q 
Sbjct: 66  TNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQL 125

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           HS  +R GF + V +Q +L+  YA  G +  A K+F+ M + D+ +WN++I GFA   +P
Sbjct: 126 HSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRP 185

Query: 226 NEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            +A+  F+ M  +G + P+  T+     AC++LGAL  G   H Y+ +  L  NV V N 
Sbjct: 186 ADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNV 245

Query: 285 LLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           ++D Y+KCG +  A  VF  MR  ++ ++W+T+++  A++G G +AL+LF+++   G  P
Sbjct: 246 VIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSP 305

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             V+++ VL AC+H G+V++G   F  M  + G+ P I+H+G MVDLLGRAG +K+AY+ 
Sbjct: 306 DAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDI 364

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           + ++  P N V+W+TLLGAC  +G   +AE+A   L+++     G +VLLSN+YA  QRW
Sbjct: 365 VSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRW 423

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +V  VR  M +  VKKTPG S +E+  ++++F  GD+SH    EI+A L EI  ++K  
Sbjct: 424 DDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAY 483

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY   T NV  DI +E+KE+AL YHSEK+A+AF L  T  GTP++V+KNLR+C DCH+ I
Sbjct: 484 GYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVI 543

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLISK+Y REI+VRDR+RFH FK+G CSC+DYW
Sbjct: 544 KLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/567 (42%), Positives = 349/567 (61%), Gaps = 44/567 (7%)

Query: 93  MSYAHNIFSHVQDPNI--FTWNTMIRGYAESANPLL---AVELYSKMHVSGIKPDTHTYP 147
           +SYA+ IF H++   +  F WN +IR    + +P      + +Y +M    + PD HT+P
Sbjct: 7   ISYANPIF-HIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           FLL +      + +G++TH+  +  G +   FV+ SL++MY++ G +  A ++F+    +
Sbjct: 66  FLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSK 125

Query: 208 DLVAWNSV-------------------------------INGFASNGKPNEALTLFREMA 236
           DL AWNSV                               ING+   GK  EAL LFREM 
Sbjct: 126 DLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 185

Query: 237 SEG-----VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
                   V P+ +TM ++ SAC  LGAL  G+  H+Y+ K G+  ++ +  AL+D Y+K
Sbjct: 186 LPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAK 245

Query: 292 CGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFV 349
           CG +  A+RVF  +  K++  ++S ++  LA+ G   E  ++F EM     + P  VTFV
Sbjct: 246 CGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFV 305

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           G+L AC H G++++G SYFK M +E+GI P I+H+GCMVDL GR+GL+K+A  +I +M M
Sbjct: 306 GILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPM 365

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+ +IW +LL    + G     E A   L++L+P +SG YVLLSN+YA   RW+ V+ +
Sbjct: 366 EPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRI 425

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R  M  + +KK PG S VE+   V EF +GD S  ++E I+AML EI ++L+  GYV  T
Sbjct: 426 RHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDT 485

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
           + V  D+EE++KE ALSYHSEK+AIAF L+ T PGTPVR++KNLR+C DCHL +K+ISK+
Sbjct: 486 KEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL 545

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +SREIVVRD +RFHHF DG CSCRD+W
Sbjct: 546 FSREIVVRDCNRFHHFSDGSCSCRDFW 572


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/597 (40%), Positives = 360/597 (60%), Gaps = 36/597 (6%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           I+LL    + K +++Q+HA     G   ++  +G+++    +S    + YA+ I      
Sbjct: 18  ISLLDSGTTFK-EIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDK 76

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGE 163
           P +F  N+MIR + +S  P  + + YS++  SG  +KPD +T  FL++A + L     G 
Sbjct: 77  PTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGL 136

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC------------------------- 198
           Q H + IR GF++   VQ  L+ +YA  G + D+C                         
Sbjct: 137 QVHGMTIRRGFDNDPHVQTGLISLYAELGCL-DSCHKVFNSVSYPDFVCRTAMVTACARC 195

Query: 199 -------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
                  K+FE M E+D +AWN++I+G+A  G+  EAL LF  M  EGV+ +G +M+S+ 
Sbjct: 196 GDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVL 255

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SAC +LGAL  GR AH+Y+ +  +   V +   L+D Y+KCG +  A  VF  M ++N  
Sbjct: 256 SACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVY 315

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +WS+ + GLA+NGFG++ L+LF  M+  G  P  VTFV VL  CS  G VDEG  +F  M
Sbjct: 316 TWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSM 375

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
           ++E+GI P+++H+GC+VDL  RAG ++ A   IQ M M  +A +W +LL A  ++ +  +
Sbjct: 376 RNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLEL 435

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
             +A   +L+LE  + G YVLLSN+YA    W NV  VR++M  + V+K PG S++E+  
Sbjct: 436 GVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNG 495

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
            V EFF+GD+SHP+  EI A+  +I+++L+L GY   T  V  DI+EEEKEDAL  HSEK
Sbjct: 496 EVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEK 555

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
            AIAF +++     P+R+VKNLRVC DCH    +ISK+++REI+VRDR+RFHHFKDG
Sbjct: 556 AAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 306/515 (59%), Gaps = 4/515 (0%)

Query: 103  VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            V+D N F      RGY      +L+  + S++   G +P+  T+  ++ A     +   G
Sbjct: 600  VRDRNRFHHFKDGRGYLGKCFEVLSRMMRSEV---GFRPNEVTFLSMISACVHGGNKEEG 656

Query: 163  EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
               H + +++G    V V N+L+++Y   G +  +CK+FE +S ++LV+WN++I     N
Sbjct: 657  VCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQN 716

Query: 223  GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
            G   E L  F      G++PD  T +++   C ++G + L +  H  +   G + N  + 
Sbjct: 717  GLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCIT 776

Query: 283  NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
             ALLD Y+K G +  +  VF E+   ++++W+ ++   A +G+G++A++ F+ M   G  
Sbjct: 777  TALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLS 836

Query: 343  PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            P  VTF  +L ACSH G+V+EG  YF+ M   Y I P+++H+ CMVDL+GR+GL++ AY 
Sbjct: 837  PDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYG 896

Query: 403  YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
             I+ M M P++ +W  LLGAC ++  + +   A   L +LEP+   +Y++LSN+Y+    
Sbjct: 897  LIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGL 956

Query: 463  WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
            W +   +R  M ++ + +  G+S +E GN++ +F +GD SHP++E+I   L EI KK+K 
Sbjct: 957  WKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKS 1016

Query: 523  E-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
            E G+  RTE V  D++E+ KE+ ++ HSEKIA+AF L+  +P  P+ + KNLR+C DCH 
Sbjct: 1017 ELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHE 1076

Query: 582  AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              K IS +  R I++RD  RFHHF +G CSCRDYW
Sbjct: 1077 TAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 164/365 (44%), Gaps = 49/365 (13%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFS 66
           H K P  E+  D   R+ S  +         +  +V+ C  L       +    QVH  +
Sbjct: 89  HCKSPVPEKSFDFYSRILSSGNGLKPDNYT-VNFLVQACTGL-----GMRETGLQVHGMT 142

Query: 67  IRHGVPLNNPDLGKYLI--YAIV-----------SLSFP-----------------MSYA 96
           IR G   N+P +   LI  YA +           S+S+P                 +++A
Sbjct: 143 IRRGFD-NDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFA 201

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  + + +   WN MI GYA+      A+ L+  M + G+K +  +   +L A ++L
Sbjct: 202 RKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQL 261

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             +  G   HS   RN  +  V +  +LV +YA  G +  A +VF  M E+++  W+S +
Sbjct: 262 GALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSAL 321

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVGL 275
           NG A NG   + L LF  M  +GV P+  T VS+   C+ +G +  G++    +  + G+
Sbjct: 322 NGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGI 381

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              ++    L+D Y++ G +  A  + ++M  K +A  WS+L+           A  ++K
Sbjct: 382 EPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLL----------HASRMYK 431

Query: 335 EMEIG 339
            +E+G
Sbjct: 432 NLELG 436



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   N+ +WNTMI  + ++      +  ++     G+KPD  T+  +L+    +  
Sbjct: 694 LFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGV 753

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           VR+ +  H + +  GF +   +  +L+ +YA  G ++D+  VF  ++  D +AW +++  
Sbjct: 754 VRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAA 813

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSD 277
           +A++G   +A+  F  M   G+ PD  T   L +AC+  G +  GR    T   +  +  
Sbjct: 814 YATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEP 873

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREM 305
            ++  + ++D   + G++  A  + +EM
Sbjct: 874 RLDHYSCMVDLMGRSGLLQDAYGLIKEM 901


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/609 (40%), Positives = 364/609 (59%), Gaps = 44/609 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + LL   + S H L Q+HA  +R G+  ++P L   L  +  SL   + ++  +F    +
Sbjct: 26  LALLIDNSKSTHHLLQIHAALLRRGLH-HHPILNFKLQRSYASLGH-LHHSVTLFHRTPN 83

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN+F W  +I  +A       A+  YS+M    I+P+  T   LLKA +    +      
Sbjct: 84  PNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAV 139

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------------------ 207
           HS AI+ G  S ++V   LV  YA  G V  A K+F+ M ER                  
Sbjct: 140 HSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGML 199

Query: 208 -------------DLVAWNSVINGFASNGKPNEALTLFREMASEG-------VEPDGYTM 247
                        D+V WN +I+G+A +G PNEAL  FR+M           V P+  T+
Sbjct: 200 PEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITV 259

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           V++ S+C ++GAL  G+  H+YV   G+  NV V  AL+D Y KCG +  A++VF  M  
Sbjct: 260 VAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEG 319

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           ++ V+W+++++G  ++GF  EAL+LF EM   G  P ++TFV VL AC+H G+V +G+  
Sbjct: 320 KDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEV 379

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  MKD YG+ PK+EH+GCMV+LLGRAG +++AY+ +++M + P+ V+W TLL AC IH 
Sbjct: 380 FDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHS 439

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           + ++ E     L+      SG YVLLSN+YA  + W+ V +VR  M    V+K PG S +
Sbjct: 440 NVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSI 499

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+ NRV EF  GDR HP++++I++ML ++   LK   Y P+T+ V  DI E+EKE +L  
Sbjct: 500 EVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEV 559

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+A+AF L++T+PG  +++VKNLRVC DCH  +K++SK+  R+I++RDR+RFHHF++
Sbjct: 560 HSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFEN 619

Query: 608 GHCSCRDYW 616
           G CSCRDYW
Sbjct: 620 GSCSCRDYW 628


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/558 (42%), Positives = 343/558 (61%), Gaps = 4/558 (0%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
            +Q+HA S++     N   L   L +YA   L   +  A  +F  +  P+   W  +I  Y
Sbjct: 570  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL---LHRAQRVFDEMPHPSTVPWTALITAY 626

Query: 119  AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             ++ +   AV +      +G++PD+ T   +L A +++AD+  GE     A + G    V
Sbjct: 627  MDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSV 686

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            FV  + V +Y   G +  A +VF+ M  +D VAW +++ G+ASNG P EAL LF  M +E
Sbjct: 687  FVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAE 746

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            G++PD Y +    SAC  LGAL LGR+A   V      DN  +  AL+D Y+KCG  + A
Sbjct: 747  GMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEA 806

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              VF++MRK++ + W+ +++GL + G  K A  L  +ME  G    + TF+G+L +C+H 
Sbjct: 807  WVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHT 866

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            G++ +G  YF  M   Y I P+IEH+GCMVDLL RAGL+++A++ + +M MP NAVI   
Sbjct: 867  GLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGA 926

Query: 419  LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
            LLG C IH ++ +AE     L+ LEP +SG+YV+LSN+Y+   RW +  ++R  M  + V
Sbjct: 927  LLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGV 986

Query: 479  KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            +K P  S VE   +V EF +GD+SHP +++I+  L E+  ++K  GY P TE V  D+E+
Sbjct: 987  EKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVED 1046

Query: 539  EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            EEKE  L +HSEK+AIAF L+ T PG  +RV KNLRVC+DCH AIKL+S++  REI+VRD
Sbjct: 1047 EEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRD 1106

Query: 599  RSRFHHFKDGHCSCRDYW 616
             +RFH F+DG CSC DYW
Sbjct: 1107 NNRFHCFRDGSCSCNDYW 1124



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 5/302 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++H     P   T P  LK+ S+L   +R GEQ H+ +++    +   V  SL+ +YA  
Sbjct: 539 RVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC 598

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +  A +VF+ M     V W ++I  +   G   EA+ + R   + G+ PD +T V + 
Sbjct: 599 GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 658

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           +ACA +  LA G        + G++ +V V  A +D Y KCG +  A+ VF +MR ++AV
Sbjct: 659 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 718

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W  +V G A NG  +EAL+LF  M+  G  P      G L AC+  G +D G    + +
Sbjct: 719 AWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMV 778

Query: 372 K-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
             DE+   P +     ++D+  + G   +A+   Q M    + ++W  ++    + GH  
Sbjct: 779 DWDEFLDNPVLG--TALIDMYAKCGSTVEAWVVFQQM-RKKDIIVWNAMILGLGMTGHEK 835

Query: 431 IA 432
           IA
Sbjct: 836 IA 837


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/597 (40%), Positives = 365/597 (61%), Gaps = 41/597 (6%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-PNIFTWNTMIR 116
           ++KQ+HA  + HG+  N   LG  LI++ +     +S+A  +F      P    WN MI+
Sbjct: 70  QIKQIHAQVVTHGLAQNTSLLGP-LIHSYIGCR-NLSFARIVFDQFPSLPPTIIWNLMIQ 127

Query: 117 GYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVR-MGEQTHSVAIRNG 173
            Y+++ +   ++ L+ +M   G     D +T+ F+  A S+   +R  GE  H + +++G
Sbjct: 128 AYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDG 187

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP-------- 225
           +ES +FV NSLV+MY+ F  + DA +VF+ M +RD++ W SV+ G+A  G+         
Sbjct: 188 YESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFD 247

Query: 226 -----------------------NEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALA 261
                                  NEAL  F +M   + V+P+   +VS+ SACA LGAL 
Sbjct: 248 MMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALD 307

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G+  H Y+ K  +  + N++ AL+D Y+KCG I  A+RVF  + KR+ ++W++++ GL+
Sbjct: 308 QGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 367

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
           ++G G E L  F EM   GF P ++T +GVL  CSH G+V+EG S F  M   +GI+PK+
Sbjct: 368 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKL 427

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+GC++DLLGRAG ++ A+E I++M M P+ V WR LL AC IHG   + E   + + +
Sbjct: 428 EHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487

Query: 442 LEP-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           L P  H G YVLLSNLYA   +W +V +VR+ M +   +  PG S +E+   V EF   D
Sbjct: 488 LCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAAD 547

Query: 501 RSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           + HP+  EI+  L E+ +++ +E GYVP T+ V  D+ EE+KE A+S+HSEK+A+AF L+
Sbjct: 548 KLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLL 607

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +T  GT +R+ KNLR C DCH A+K IS V++REIVVRDRSRFH F+ G+CSC DYW
Sbjct: 608 STQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 139/326 (42%), Gaps = 41/326 (12%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   T+  LLK    L  ++   Q H+  + +G      +   L+H Y    ++  A  V
Sbjct: 53  PSHSTFVQLLKKRPSLTQIK---QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 201 F-ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAEL 257
           F +  S    + WN +I  ++      E+L LF +M + G     D YT   +F+AC+  
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRH 169

Query: 258 GAL-ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
             L   G   H  V K G   ++ V N+L++ YS    ++ A+RVF EM +R+ ++W+++
Sbjct: 170 PTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSV 229

Query: 317 VVGLAVNGFGKEALELFKEME----------IGGFV----------------------PG 344
           V G A+ G    A ELF  M           + G+V                      P 
Sbjct: 230 VKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPN 289

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E   V +L AC+H G +D+G  +     D+  I+        ++D+  + G +  A    
Sbjct: 290 EAVLVSILSACAHLGALDQG-KWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVF 348

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSA 430
              L   + + W +++   ++HG  A
Sbjct: 349 DG-LHKRDLLTWTSMISGLSMHGLGA 373


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/530 (43%), Positives = 331/530 (62%), Gaps = 12/530 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  + + N+ +W  +I GY ES     A+ L+  +   G++PD+ T   +L A
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYA 212

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S++ D+  G         +G    VFV  SLV MYA  G +++A +VF+ M E+D+V W
Sbjct: 213 CSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCW 272

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I G+ASNG P EAL +F EM  E V PD Y MV +FSAC+ LGAL LG       W 
Sbjct: 273 SALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGN------WA 326

Query: 273 VGLSD------NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
            GL D      N  +  AL+DFY+KCG +  A+ VF+ MR+++ V ++ ++ GLA+ G  
Sbjct: 327 RGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHV 386

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
             A  +F +M   G  P   TFVG+L  C+H G+VD+G  YF  M   + + P IEH+GC
Sbjct: 387 GAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGC 446

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           MVDL  RAGL+ +A + I++M M  N+++W  LLG C +H  + +AE     L++LEP +
Sbjct: 447 MVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWN 506

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
           SG YVLLSN+Y+   RW   +++R ++ ++ ++K PG S VE+   V EF +GD SHP +
Sbjct: 507 SGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLS 566

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
            +I+  L  + K L+  GY P TE V  D+EEEEKE  L  HSEK+A+AF L++T     
Sbjct: 567 HKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDV 626

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +RVVKNLRVC DCH AIKL+SKV  REI+VRD +RFHHF +G CSCRDYW
Sbjct: 627 IRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 207/382 (54%), Gaps = 11/382 (2%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV--SLSFPMS-YAHNIFSHVQDPNIFTW 111
           S H+ KQ H   +R G+  +      YLI  ++  SL F  + YA  +F+    PNIF +
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDT-----YLINLLLRSSLHFAATQYATVVFAQTPHPNIFLY 69

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQTHSVAI 170
           NT+IRG   +     AV +Y+ M   G  PD  T+PF+LKA ++L     +G   HS+ I
Sbjct: 70  NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           + GF+  VFV+  LV +Y+  G + DA KVF+ + E+++V+W ++I G+  +G   EAL 
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALG 189

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LFR +   G+ PD +T+V +  AC+ +G LA GR    Y+ + G   NV V  +L+D Y+
Sbjct: 190 LFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYA 249

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+RVF  M +++ V WS L+ G A NG  KEAL++F EM+     P     VG
Sbjct: 250 KCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVG 309

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           V  ACS  G ++ G ++ + + D    +        ++D   + G V QA E  + M   
Sbjct: 310 VFSACSRLGALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM-RR 367

Query: 411 PNAVIWRTLLGACTIHGHSAIA 432
            + V++  ++    + GH   A
Sbjct: 368 KDCVVFNAVISGLAMCGHVGAA 389



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 3/266 (1%)

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +   +Q H + +R G     ++ N L+     F   + A  VF      ++  +N++
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG-ALALGRRAHTYVWKVG 274
           I G  SN    +A++++  M   G  PD +T   +  AC  L     +G   H+ V K G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V V   L+  YSK G +  A++VF E+ ++N VSW+ ++ G   +G   EAL LF+
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            +   G  P   T V +LYACS  G +  G  +      E G +  +     +VD+  + 
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASG-RWIDGYMRESGSVGNVFVATSLVDMYAKC 251

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLL 420
           G +++A      M+   + V W  L+
Sbjct: 252 GSMEEARRVFDGMV-EKDVVCWSALI 276


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/523 (43%), Positives = 333/523 (63%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GY E+ N   A+ELY  M  + +KPD  T   ++ A ++
Sbjct: 150 ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQ 209

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF S + + N L+ +Y+  G V+ AC +F+ ++++D+++WN++
Sbjct: 210 SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTL 269

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G        EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 270 IGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLK 329

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AA++VF  M  R+  SW+ ++ G A++G    A +LF
Sbjct: 330 GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLF 389

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            +M   G  P ++TFVG+L ACSH GM+D G   F+ M  +Y I PK+EH+GCM+DLLG 
Sbjct: 390 SKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGH 449

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            GL K+A E I+ M M P+ VIW +LL AC +H +  + E     L+++EP++ G YVLL
Sbjct: 450 CGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLL 509

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V ++R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 510 SNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRML 569

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   ++  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 570 EEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 629

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+R H  KDG  SC DYW
Sbjct: 630 RVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 211/385 (54%), Gaps = 40/385 (10%)

Query: 84  YAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           ++++S  F  +SYA +IF  +Q+PN+  WNTM RG+A +++ + A++LY  M   G+ P+
Sbjct: 5   FSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPN 64

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
           ++++PFLLK+ +K   +  G+Q H   ++ G++  ++V  SL+ MYA  G ++DA KVF+
Sbjct: 65  SYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124

Query: 203 LMSER-------------------------------DLVAWNSVINGFASNGKPNEALTL 231
             S R                               D+V+WN++I+G+       EAL L
Sbjct: 125 RSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALEL 184

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           +++M    V+PD  TMV++ SACA+ G++ LGR+ H+++   G   N+ + N L+D YSK
Sbjct: 185 YKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSK 244

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A  +F+ + K++ +SW+TL+ G       KEAL LF+EM   G  P +VT + V
Sbjct: 245 CGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 352 LYACSHCGMVDEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           L AC+H G +D G        KR+K   G+         ++D+  + G ++ A +   +M
Sbjct: 305 LPACAHLGAIDIGRWIHVYINKRLK---GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 361

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIA 432
           L    +  W  ++    +HG +  A
Sbjct: 362 LTRSLSS-WNAMIFGFAMHGKANAA 385


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/523 (42%), Positives = 335/523 (64%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+ N   A+EL+  M  + ++PD  T   ++ A ++
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q H     +GF S + + N+L+ +Y+  G ++ AC +FE +  +D+++WN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AA +VF  +  ++  SW+ ++ G A++G    + +LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M  +Y + PK+EH+GCM+DLLG 
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I  M M P+ VIW +LL AC +HG+  + E     L+++EP++ G YVLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V + R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 238/440 (54%), Gaps = 42/440 (9%)

Query: 27  YHSTPASQENPITSVVR-KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           +H  P+S + P  S+     ++LL  C + +  L+ +HA  I+ G+   N  L K + + 
Sbjct: 17  FHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQ-SLRIIHAQMIKIGLHNTNYALSKLIEFC 75

Query: 86  IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
           I+S  F  + YA ++F  +Q+PN+  WNTM RG+A S++P+ A++LY  M   G+ P+++
Sbjct: 76  ILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-- 202
           T+PF+LK+ +K    + G+Q H   ++ G +  ++V  SL+ MY   G ++DA KVF+  
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195

Query: 203 --------------------------LMSE---RDLVAWNSVINGFASNGKPNEALTLFR 233
                                     L  E   +D+V+WN++I+G+A  G   EAL LF+
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           +M    V PD  TMV++ SACA+ G++ LGR+ H ++   G   N+ + NAL+D YSKCG
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A  +F  +  ++ +SW+TL+ G       KEAL LF+EM   G  P +VT + +L 
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375

Query: 354 ACSHCGMVDEG----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           AC+H G +D G        KR+K   G+         ++D+  + G ++ A++ + N ++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLK---GVTNASSLRTSLIDMYAKCGDIEAAHQ-VFNSIL 431

Query: 410 PPNAVIWRTLLGACTIHGHS 429
             +   W  ++    +HG +
Sbjct: 432 HKSLSSWNAMIFGFAMHGRA 451


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/518 (42%), Positives = 332/518 (64%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +    + +WN ++ GYA++++P  A++LY +M  SG+ PD  T   LL A S++  
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  GE+ H  A+RNG     F+  SL+ +Y   G    A  +F+ M  R LV+WN +I G
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 385

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           ++ NG P+EA+ LFR+M S+G++P    ++ +  AC++L AL LG+  H +  K  L+++
Sbjct: 386 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 445

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V+++++D Y+K G I  +QR+F  +R+++  SW+ ++ G  ++G GKEALELF++M  
Sbjct: 446 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 505

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P + TF G+L ACSH G+V++G  YF +M + + I PK+EH+ C+VD+LGRAG + 
Sbjct: 506 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 565

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            A   I+ M   P++ IW +LL +C IHG+  + E   + LL+LEP+   +YVL+SNL+A
Sbjct: 566 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 625

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              +W +V+ VR  M    ++K  G S +E+G +V  F +GD   P+ EE+      +  
Sbjct: 626 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEV 685

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+   GY P T +V  D+EEE+K   L  HSEK+AI+F L+NTA G PVRV KNLR+C D
Sbjct: 686 KISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGD 745

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISKV +R+IVVRD  RFHHF+DG CSC DYW
Sbjct: 746 CHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 189/371 (50%), Gaps = 16/371 (4%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKP 141
           I  + S+    S +  +F  ++  N+F WN ++  Y  +     A+ ++S++  V+  KP
Sbjct: 147 IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKP 206

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK-V 200
           D  T P ++KA + L D+ +G+  H +A +    S VFV N+L+ MY   G V++A K V
Sbjct: 207 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRV 266

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+LM  + + +WN+++ G+A N  P +AL L+ +M   G++PD +T+ SL  AC+ + +L
Sbjct: 267 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL 326

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             G   H +  + GL+ +  +  +LL  Y  CG   AAQ +F  M  R+ VSW+ ++ G 
Sbjct: 327 HYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGY 386

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-----FSYFKRMKDEY 375
           + NG   EA+ LF++M   G  P E+  + V  ACS    +  G     F+    + ++ 
Sbjct: 387 SQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDI 446

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAE 433
            +   I      +D+  + G +  + + I + L   +   W  ++    IHG    A+  
Sbjct: 447 FVSSSI------IDMYAKGGCIGLS-QRIFDRLREKDVASWNVIIAGYGIHGRGKEALEL 499

Query: 434 IARSTLLQLEP 444
             +   L L+P
Sbjct: 500 FEKMLRLGLKP 510



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 181/368 (49%), Gaps = 17/368 (4%)

Query: 13  YEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHG 70
           Y + SD P +   LY     S  +P    +    +LL  C+  K  H  +++H F++R+G
Sbjct: 285 YAQNSD-PRKALDLYLQMTDSGLDPDWFTIG---SLLLACSRMKSLHYGEEIHGFALRNG 340

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           + ++ P +G  L+   +    P + A  +F  ++  ++ +WN MI GY+++  P  A+ L
Sbjct: 341 LAVD-PFIGISLLSLYICCGKPFA-AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINL 398

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           + +M   GI+P       +  A S+L+ +R+G++ H  A++      +FV +S++ MYA 
Sbjct: 399 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK 458

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G +  + ++F+ + E+D+ +WN +I G+  +G+  EAL LF +M   G++PD +T   +
Sbjct: 459 GGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 518

Query: 251 FSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKR 308
             AC+  G +  G      +  +  +   +     ++D   + G I  A R+  EM    
Sbjct: 519 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDP 578

Query: 309 NAVSWSTLVVGLAVN---GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           ++  WS+L+    ++   G G++      E+E     P     +  L+A S  G  D+  
Sbjct: 579 DSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEK--PENYVLISNLFAGS--GKWDDVR 634

Query: 366 SYFKRMKD 373
               RMKD
Sbjct: 635 RVRGRMKD 642



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 10/212 (4%)

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGY----TMVSLFSACAELGALALGRRAHTYV- 270
           I     +G   EAL  F +  S+ V  D       M  L  AC +   + +GRR H  V 
Sbjct: 74  IKKLCESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVS 132

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
                 ++  +N  ++  YS CG    ++ VF ++R++N   W+ +V     N   ++A+
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 331 ELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMV 388
            +F E+  +    P   T   V+ AC+  G++D G       M  +  ++  +     ++
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALI 250

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            + G+ GLV++A + + +++       W  LL
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/524 (43%), Positives = 334/524 (63%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  + + N+ TWN M+ G  +       + L+ +MH  G  PD  T   +L+ 
Sbjct: 39  LDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRG 98

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L     G+Q H+  ++ G+E  + V +SL HMY   G + +  KV + M  R++VAW
Sbjct: 99  CAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAW 158

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G A NG     L L+  M   G+ PD  T+VS+ S+ AEL  L  G++ H    K
Sbjct: 159 NTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIK 218

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G +  V V ++L+  YSKCG +  + +   +    ++V WS+++     +G G+EA+ L
Sbjct: 219 AGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHL 278

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F++ME  G    +VTF+ +LYACSH G+ ++G  +FK M ++YG+ P++EH+ C+VDLLG
Sbjct: 279 FEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLG 338

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+G + +A   I++M +  + VIW+TLL AC IH ++ +A      +L+L P+ S  YVL
Sbjct: 339 RSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVL 398

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN++A  +RW +V +VR TM    VKK PG S +E+ NRVF+F MGD+SHP +EEI   
Sbjct: 399 LSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLY 458

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+ +++KL GYVP T  VF D + EEKE++L  HSEK+AIAF L+N  PG+P+RV+KN
Sbjct: 459 LKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKN 518

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C+DCH+AIKLIS + +REI+VRD SRFHHFK G CSC DYW
Sbjct: 519 LRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 160 RMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +MGE   ++A  N      +   N L++ +   G +  A KVF+ M ER++  WN++++G
Sbjct: 4   KMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSG 63

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
                     L LFREM   G  PD +T+ S+   CA L A   G++ H YV K G   N
Sbjct: 64  LIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFN 123

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V ++L   Y K G +   ++V + MR RN V+W+TL+ G A NG  +  L+L+  M++
Sbjct: 124 LVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKM 183

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P ++T V V+ + +    + +G         + G    +     ++ +  + G ++
Sbjct: 184 SGLRPDKITLVSVISSSAELATLFQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLE 242

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG--DYVLLSNL 456
            + + + +    P++V+W +++ A   HG     E A     Q+E +  G  D   LS L
Sbjct: 243 DSMKALLD-CEHPDSVLWSSMIAAYGFHGR---GEEAVHLFEQMEQEGLGGNDVTFLSLL 298

Query: 457 YA 458
           YA
Sbjct: 299 YA 300



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 9/286 (3%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
            E  + SV+R C  L      + +  KQVHA+ +++G   N   +G  L +  +  S  +
Sbjct: 88  DEFTLGSVLRGCAGL-----RASYAGKQVHAYVLKYGYEFNLV-VGSSLAHMYMK-SGSL 140

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
                +   ++  N+  WNT+I G A++ +    ++LY+ M +SG++PD  T   ++ + 
Sbjct: 141 GEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSS 200

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++LA +  G+Q H+ AI+ G  S V V +SL+ MY+  G ++D+ K        D V W+
Sbjct: 201 AELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWS 260

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVWK 272
           S+I  +  +G+  EA+ LF +M  EG+  +  T +SL  AC+  G    G       V K
Sbjct: 261 SMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK 320

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
            GL   +     ++D   + G +  A+ + R M  + + V W TL+
Sbjct: 321 YGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLL 366


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/524 (43%), Positives = 325/524 (62%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + + ++  WN +I G++++     A  L+  MH  GI  +  T   +LK+
Sbjct: 263 MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           I+ L    M  Q H++++++GFE   +V NSL+  Y   GHV+DA +VFE     DLV +
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S++  +A +G+  EAL L+ EM   G++PD +   SL +ACA L A   G++ H ++ K
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   ++   N+L++ Y+KCG I  A   F  +  R  VSWS ++ GLA +G+GKEAL+L
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQL 502

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FK+M   G  P  +T V VL AC+H G+V E   YF  MK  +GI P  EH+ CM+DLLG
Sbjct: 503 FKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLG 562

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG ++ A E +  M    NA++W  LLGA  IH +  + E A   LL LEP+ SG +VL
Sbjct: 563 RAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVL 622

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L+N+YA    W  V  VRR M   +VKK PG S +E+ ++V+ F +GDRSH ++ EI+A 
Sbjct: 623 LANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAK 682

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E++  LK  GYVP  E    D+E  EKE  L +HSEK+A+AF L+ T PG P+RV KN
Sbjct: 683 LDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKN 742

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH  +K ISK+ SREI+VRD +RFHHF++G CSC +YW
Sbjct: 743 LRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           MH+ GIK +   +P +LKA +   D+ +G+Q H + +  GF+S  FV NSLV +YA  G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
             DA  +F+ + +R +V+WN++ + +  +    EA++LF +M   G+ P+ +++ S+ + 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C  L     GR+ H Y+ K+G   +    NAL+D Y+K GI+  A  VF E+ K + VSW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           + ++ G  ++ +   ALEL +EM   G  P   T    L AC+
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 196/416 (47%), Gaps = 43/416 (10%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           ++L+ C  +K  +  KQVH   +  G      D  +++  ++V L         A ++F 
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGF-----DSDEFVANSLVILYAKCGGFGDARSLFD 69

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            + D ++ +WN +   Y  S     AV L+  M +SGI+P+  +   ++   + L D   
Sbjct: 70  AIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQ 129

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + H   I+ G++S  F  N+LV MYA  G ++DA  VF+ +++ D+V+WN++I G   
Sbjct: 130 GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVL 189

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +   + AL L REM   G+ P+ +T+ S   ACA +    LGR+ H+ + K+ +  +  +
Sbjct: 190 HEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFL 249

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
              L+D YSKC  +  A+ VF+ M +R+ ++W+ ++ G + N   +EA  LF  M   G 
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 342 VPGEVTFVGVL---------YACS--HCGMVDEGFSY----FKRMKDEYGIMPKIEH--- 383
              + T   VL         Y C   H   +  GF +       + D YG    +E    
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATR 369

Query: 384 ------------FGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACT 424
                       F  +V    + G  ++A   Y  +Q+  + P++ +  +LL AC 
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA 425


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/561 (40%), Positives = 333/561 (59%), Gaps = 37/561 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA N+F  +   ++ TWNTMI  Y        A +L+ +M  S + PD      ++ A
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSA 221

Query: 153 ISKLADVRMGEQTHSVAIRNG---------------------------FESL----VFVQ 181
             +  ++R     +   I N                            F  +    +FV 
Sbjct: 222 CGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
            ++V  Y+  G + DA  +F+   ++DLV W ++I+ +  +  P EAL +F EM   G++
Sbjct: 282 TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  +M S+ SACA LG L   +  H+ +   GL   +++NNAL++ Y+KCG + A + V
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDV 401

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F +M +RN VSWS+++  L+++G   +AL LF  M+     P EVTFVGVLY CSH G+V
Sbjct: 402 FEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLV 461

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           +EG   F  M DEY I PK+EH+GCMVDL GRA L+++A E I++M +  N VIW +L+ 
Sbjct: 462 EEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMS 521

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC IHG   + + A   +L+LEP H G  VL+SN+YA EQRW +V+ +RR M ++ V K 
Sbjct: 522 ACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKE 581

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
            G S ++   +  EF +GD+ H Q+ EI+A L E+  KLKL GYVP   +V  D+EEEEK
Sbjct: 582 KGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEK 641

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTP------VRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +D + +HSEK+A+ F L+N            +R+VKNLRVC DCHL  KL+SKVY REI+
Sbjct: 642 KDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREII 701

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRDR+RFH +K+G CSCRDYW
Sbjct: 702 VRDRTRFHCYKNGLCSCRDYW 722



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 205/444 (46%), Gaps = 42/444 (9%)

Query: 37  PITSVVRKCI-TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS- 94
           PI S     I   L  C S  H +KQ+HA  +R  +   N  L  +L    VS S     
Sbjct: 6   PIASTAANTILEKLSFCKSLNH-IKQLHAHILRTVI---NHKLNSFLFNLSVSSSSINLS 61

Query: 95  YAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           YA N+FS +  P     +N  +R  + S+ P   +  Y ++   G + D  ++  +LKA+
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           SK++ +  G + H VA +       FV+   + MYA+ G +  A  VF+ MS RD+V WN
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK- 272
           ++I  +   G  +EA  LF EM    V PD   + ++ SAC   G +   R  + ++ + 
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241

Query: 273 ------------------VGLSD------------NVNVNNALLDFYSKCGIIIAAQRVF 302
                              G  D            N+ V+ A++  YSKCG +  AQ +F
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
            +  K++ V W+T++     + + +EAL +F+EM   G  P  V+   V+ AC++ G++D
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           +   +        G+  ++     ++++  + G +    +  + M    N V W +++ A
Sbjct: 362 KA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM-PRRNVVSWSSMINA 419

Query: 423 CTIHGHS--AIAEIARSTLLQLEP 444
            ++HG +  A++  AR     +EP
Sbjct: 420 LSMHGEASDALSLFARMKQENVEP 443


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/559 (42%), Positives = 353/559 (63%), Gaps = 2/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+Q+HA  I  G+      + K L +A  + S P+SY   +F  +  P+ F ++++I   
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLSFAYAAAS-PISYTRRLFFSIPKPDTFLFHSLITLT 93

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++ + P  ++  Y +M ++ I    +T+  ++K+ + L    +GE  H      G+    
Sbjct: 94  SKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDA 153

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +VQ +LV  YA  GHV  A KVF+ M E+ +VAWNS+I+G+  NG   EA+ LF  M   
Sbjct: 154 YVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDL 213

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+PD  T VSL SACA++GA+ LG   H Y+ +     NV +  AL++ YS+CG +  A
Sbjct: 214 GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKA 273

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M ++N V+W+ ++ G  ++G G +A+ELF EM   G  P  VTFV VL AC+H 
Sbjct: 274 REVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHA 333

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWR 417
           G+VDEG   F  MK EYG++P +EH  CMVD+LGRAG + +AY++I+N     P   +W 
Sbjct: 334 GLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWT 393

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            +LGAC +H +  +       LL +EP++ G YV+LSN+YA   R   V+++R  M++ R
Sbjct: 394 AMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNR 453

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G+S +++ ++V+ F MGD+SHP+T +I+  L E+  + +  GY+P +E+V  ++E
Sbjct: 454 LKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVE 513

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEE+E AL YHSEK+AIAF L+ T  G  +R+VKNLR+C DCH AIK IS + +REI VR
Sbjct: 514 EEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVR 573

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           DR RFHHFKDG CSC+DYW
Sbjct: 574 DRLRFHHFKDGSCSCQDYW 592


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/579 (42%), Positives = 351/579 (60%), Gaps = 6/579 (1%)

Query: 38   ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
            + SV+R C +L+     S+    Q+H  +++ G  + +  +   LI  + S S  M  A 
Sbjct: 1008 LASVLRACSSLIDGLNISR----QIHVHALKTG-NIADSFVATTLI-DVYSKSGKMEEAE 1061

Query: 98   NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
             +F +  D ++  WN M+ GY    +   A+EL+S +H SG K D  T     KA   L 
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 158  DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
             +  G+Q H+ AI+ GF+S + V + ++ MY   G + +A  VF  +S  D VAW S+I+
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 1181

Query: 218  GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            G   NG  ++AL ++  M    V PD YT  +L  A + + AL  GR+ H  V K+    
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVS 1241

Query: 278  NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            +  V  +L+D Y+KCG I  A R+F++M  RN   W+ ++VGLA +G  +EA+ LFK M+
Sbjct: 1242 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 1301

Query: 338  IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
              G  P  V+F+G+L ACSH G+  E + Y   M ++YGI P+IEH+ C+VD LGRAGLV
Sbjct: 1302 SHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV 1361

Query: 398  KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            ++A + I+ M    +A I R LLGAC I G     +   + L  LEP  S  YVLLSN+Y
Sbjct: 1362 QEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIY 1421

Query: 458  AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
            A   RW +V + R+ M ++ VKK PG S +++ N +  F + DRSHPQ + I+  + E+ 
Sbjct: 1422 AAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMM 1481

Query: 518  KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K ++ +GYVP TE V  D+E+EEKE +L YHSEK+AIA+ L++T   T +RV+KNLRVC 
Sbjct: 1482 KTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCG 1541

Query: 578  DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIK ISKV+ REIV+RD +RFHHF+DG CSC DYW
Sbjct: 1542 DCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 183/372 (49%), Gaps = 27/372 (7%)

Query: 67   IRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL 126
            I +GV   N D GK+L   + + +  +S + +      +P++F WN  +     + +   
Sbjct: 834  ILNGVSEVNWDEGKWLADQVQAYAAKLSLSDD------NPDVFCWNKKLSECLWAGDNWG 887

Query: 127  AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
            A+E +  M+   I  D  T   +L A++   D+ +G+Q H +A+++G +S V V NSLV+
Sbjct: 888  AIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVN 947

Query: 187  MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
            MY+  G    A +VF  M   DL++WNS+I+  A +    E++ LF ++  EG++PD +T
Sbjct: 948  MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 1007

Query: 247  MVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            + S+  AC+ L   L + R+ H +  K G   +  V   L+D YSK G +  A+ +F+  
Sbjct: 1008 LASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNK 1067

Query: 306  RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG- 364
               +   W+ ++ G  +   GK+ALELF  +   G    ++T      AC    ++D+G 
Sbjct: 1068 DDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK 1127

Query: 365  --------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
                      +   +    GI+      G MV+    AG+V   + YI      P+ V W
Sbjct: 1128 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVN----AGIV---FNYIS----APDDVAW 1176

Query: 417  RTLLGACTIHGH 428
             +++  C  +G+
Sbjct: 1177 TSMISGCVDNGN 1188



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL+      ++ +G+ TH+  + +G     F+ N+L+ MY+  G +  A +VF+   ERD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 209 LVAWNSVINGFAS-----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           LV WN+++  +A+     +G   E L LFR + +        T+  +   C   G L   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H Y  K+GL  +V V+ AL++ YSKCG +  A+ +F  MR+R+ V W+ ++ G    
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G  KEA +LF E    G  P E +   +L   S     DEG
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEG 846



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 134/295 (45%), Gaps = 27/295 (9%)

Query: 62   VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
            VH ++I+ G+  +    G   +  I S    M  A  +F  +++ ++  WN M++GY + 
Sbjct: 749  VHGYAIKIGLEWDVFVSGA--LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 122  ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                 A +L+S+ H SG++PD  +   +L  +S++               N  E      
Sbjct: 807  GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV---------------NWDEGKWLAD 851

Query: 182  NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
               V  YAA   + D           D+  WN  ++     G    A+  F  M    ++
Sbjct: 852  Q--VQAYAAKLSLSD--------DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNID 901

Query: 242  PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
             D  T++ + +A A    L LG++ H    K GL  +V+V N+L++ YSK G    A+ V
Sbjct: 902  YDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREV 961

Query: 302  FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            F +M+  + +SW++++   A +   +E++ LF ++   G  P   T   VL ACS
Sbjct: 962  FNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 8/194 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAES-----ANPLLAVELYSKMHVSGIKPDTHTYP 147
           +S A  +F    + ++ TWN ++  YA S      N    + L+  +  S       T  
Sbjct: 672 LSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLA 731

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +LK       +   E  H  AI+ G E  VFV  +LV++Y+  G ++DA  +F+ M ER
Sbjct: 732 PVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER 791

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG---ALALGR 264
           D+V WN ++ G+   G   EA  LF E    G+ PD +++  + +  +E+       L  
Sbjct: 792 DVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLAD 851

Query: 265 RAHTYVWKVGLSDN 278
           +   Y  K+ LSD+
Sbjct: 852 QVQAYAAKLSLSDD 865



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 13/169 (7%)

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L LG+  H  +   G + +  ++N LL  YSKCG + +A++VF    +R+ V+W+ ++  
Sbjct: 637 LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 696

Query: 320 LAV-----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC--SHCGMVDEGF-SYFKRM 371
            A      +G  +E L LF+ +         +T   VL  C  S C    EG   Y  ++
Sbjct: 697 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 756

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
             E+ +       G +V++  + G ++ A   + + +   + V+W  +L
Sbjct: 757 GLEWDVFVS----GALVNIYSKCGRMRDA-RLLFDWMRERDVVLWNMML 800


>gi|147809935|emb|CAN67095.1| hypothetical protein VITISV_016806 [Vitis vinifera]
          Length = 348

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/330 (70%), Positives = 262/330 (79%), Gaps = 17/330 (5%)

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGF-GKEA--------LELFKEMEIGGFVPGEV 346
           +  + V + M +RN V+W++       NGF G+ A        L L    E+G    G  
Sbjct: 27  VLTKAVRKLMAERNLVTWNS------GNGFAGRGARWVHHGYRLLLNACAELGALALGRG 80

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
              G++   S   +VDEGF YFKRMK+EYGI+PKIEH+GCMVDLLGRAGLVKQA+E+IQN
Sbjct: 81  K--GLMCTLSLWDLVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN 138

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M M PNAV+WRTLLGACTIHGH A+ E+AR+ LLQLEPKHSGDYVLLSNLYA EQRW +V
Sbjct: 139 MPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDV 198

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
            +VRRTM++E VKKTPGHSLVEL NR+ EF MGDRSHPQTEEI+  LAEITK LKLEGYV
Sbjct: 199 HKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYV 258

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P   NV ADIEEEEKE ALSYHSEKIAIAFML+NTA G P+RVVKNLRVCADCHLAIKLI
Sbjct: 259 PHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLI 318

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SKV+ REIVVRDRSRFHHFKDGHCSC+DYW
Sbjct: 319 SKVFDREIVVRDRSRFHHFKDGHCSCKDYW 348



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 37/145 (25%)

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           V +LM+ER+LV WNS  NGFA  G             +  V   GY +  L +ACAELGA
Sbjct: 32  VRKLMAERNLVTWNSG-NGFAGRG-------------ARWVH-HGYRL--LLNACAELGA 74

Query: 260 LALGR----RAHTYVWKV---------------GLSDNVNVNNALLDFYSKCGIIIAAQR 300
           LALGR         +W +               G+   +     ++D   + G++  A  
Sbjct: 75  LALGRGKGLMCTLSLWDLVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE 134

Query: 301 VFREM-RKRNAVSWSTLVVGLAVNG 324
             + M  + NAV W TL+    ++G
Sbjct: 135 FIQNMPMQPNAVVWRTLLGACTIHG 159


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 352/560 (62%), Gaps = 4/560 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +Q H   ++ G+ L+   +G  L+  YA       +  A  +F  +   N+ +W  +I G
Sbjct: 165 RQFHCLVMKSGLDLDVC-VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITG 223

Query: 118 YAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           Y +S      A+EL+ +M    +KP+  T+  +LKA + L+D+ +GEQ +++ ++    S
Sbjct: 224 YVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLAS 283

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL+ MY+  G++++A K F+++ E++LV++N+++N +A +    EA  LF E+ 
Sbjct: 284 INCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIE 343

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G   + +T  SL S  + +GA+  G + H+ + K G   N+++ NAL+  YS+CG I 
Sbjct: 344 GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIE 403

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF EM   N +SW++++ G A +GF   ALE F +M   G  P EVT++ VL ACS
Sbjct: 404 AAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACS 463

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G++ EG  +FK MK E+GI+P++EH+ C+VDLLGR+G +++A E + +M    +A++ 
Sbjct: 464 HVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVL 523

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RT LGAC +HG+  + + A   +L+ +P     Y+LLSNL+A   +W  V E+R+ M + 
Sbjct: 524 RTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKER 583

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ N+V +F++GD SHPQ +EI+  L ++  K+K  GY+P T+ V  D+
Sbjct: 584 NLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDV 643

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE+KE  L  HSEKIA+A+  ++T+   P+RV KNLRVC DCH A K  S V  +EIV+
Sbjct: 644 EEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVL 703

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHFKDG CSC DYW
Sbjct: 704 RDANRFHHFKDGTCSCNDYW 723



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 201/406 (49%), Gaps = 17/406 (4%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKL---KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
            E   T V R C        S+K  +   K +  F ++ G   ++  +G  LI   V  +
Sbjct: 41  NEYCFTGVFRAC--------SNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGN 92

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             +  A+ +F  + D N+ TW  MI  + +      AV+L+  M +SG  PD  T   ++
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---AFGHVKDACKVFELMSER 207
            A +++  + +G Q H + +++G +  V V  SLV MYA   A G V DA KVF+ M   
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 208 DLVAWNSVINGFA-SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           ++++W ++I G+  S G   EA+ LF EM    V+P+ +T  S+  ACA L  + LG + 
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           +  V K+ L+    V N+L+  YS+CG +  A++ F  + ++N VS++T+V   A +   
Sbjct: 273 YALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNS 332

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA ELF E+E  G      TF  +L   S  G + +G     R+  + G    +     
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL-KSGFKSNLHICNA 391

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           ++ +  R G ++ A++ + N +   N + W +++     HG +  A
Sbjct: 392 LISMYSRCGNIEAAFQ-VFNEMGDGNVISWTSMITGFAKHGFATRA 436



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 170/326 (52%), Gaps = 16/326 (4%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W+ +I  YA +     A+  +  M   G  P+ + +  + +A S   ++ +G+   
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 167 SVAIRNG-FESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
              ++ G FES V V  +L+ M+    G ++ A KVF+ M +R++V W  +I  F   G 
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             +A+ LF +M   G  PD +T+  + SACAE+G L+LGR+ H  V K GL  +V V  +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 285 LLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVG-LAVNGFGKEALELFKEMEIGG 340
           L+D Y+KC   G +  A++VF  M   N +SW+ ++ G +   G  +EA+ELF EM  G 
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 341 FVPGEVTFVGVLYACSHCGMV---DEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGL 396
             P   TF  VL AC++   +   ++ ++   +M+     +  I   G  ++ +  R G 
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMR-----LASINCVGNSLISMYSRCGN 300

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGA 422
           ++ A +   ++L   N V + T++ A
Sbjct: 301 MENARKAF-DVLFEKNLVSYNTIVNA 325



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 149/302 (49%), Gaps = 21/302 (6%)

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           ++RDLV+W+++I+ +A+N K  EA++ F +M   G  P+ Y    +F AC+    ++LG+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 265 RAHTYVWKVG-LSDNVNVNNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
               ++ K G    +V V  AL+D + K  G + +A +VF  M  RN V+W+ ++     
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
            GF ++A++LF +M + G+VP   T  GV+ AC+  G++  G   F  +  + G+   + 
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG-RQFHCLVMKSGLDLDV- 180

Query: 383 HFGC-MVDLLGRA---GLVKQAYEYIQNMLMPPNAVIWRTLL------GACTIHGHSAIA 432
             GC +VD+  +    G V  A +    M +  N + W  ++      G C         
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPV-HNVMSWTAIITGYVQSGGCDREAIELFL 239

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP--GHSLVELG 490
           E+ +    Q++P H     +L         WL  ++V   +VK R+      G+SL+ + 
Sbjct: 240 EMVQG---QVKPNHFTFSSVLKACANLSDIWLG-EQVYALVVKMRLASINCVGNSLISMY 295

Query: 491 NR 492
           +R
Sbjct: 296 SR 297


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 337/529 (63%), Gaps = 2/529 (0%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  +     +F  +   ++ +WNT+I G A++     A+ +  +M    ++PD+ T   +
Sbjct: 146 SVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSI 205

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L   ++ A+V  G++ H  AIR+GF+  VF+ +SL+ MYA    V+ +   F L+S RD 
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDA 265

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++WNS+I G   NG+ ++ L  FR M  E V+P   +  S+  ACA L AL LG++ H Y
Sbjct: 266 ISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAY 325

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWSTLVVGLAVNGFGK 327
           + ++G  DN  + ++LLD Y+KCG I  A+ +F   EM  R+ VSW+ +++G A++G   
Sbjct: 326 IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHAL 385

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           +A+ LF+EM + G  P  V F+ VL ACSH G+VDEG+ YF  M+ ++G+ P +EH+  +
Sbjct: 386 DAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAV 445

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
            DLLGRAG +++AY++I NM   P   +W TLL AC  H +  +AE   + +L ++P + 
Sbjct: 446 ADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNM 505

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G +V++SN+Y+  QRW +  ++R  M K  +KKTP  S +E+GN+V  F  GD+SHP  +
Sbjct: 506 GAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYD 565

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
           +I+  L  + ++++ EGYV  T  V  D++EE K D L  HSE++AIAF +++T  GT +
Sbjct: 566 KINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTI 625

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV+KN+RVC DCH AIK ++K+  REI+VRD SRFHHFK+G CSC DYW
Sbjct: 626 RVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 34/352 (9%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+   W  +I+ YA       ++  ++ +   GI PD H +P LL+A +      + +  
Sbjct: 39  PHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSL 98

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFG----------------------HVKDACKVFEL 203
           H+  IR GF   ++  N+L++MY+ F                        +    K+F+ 
Sbjct: 99  HAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDR 158

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M  RD+V+WN+VI G A NG   EAL + +EM  E + PD +T+ S+     E   +  G
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG 218

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H Y  + G   +V + ++L+D Y+KC  +  +   F  +  R+A+SW++++ G   N
Sbjct: 219 KEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQN 278

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMK-DEYGIMP 379
           G   + L  F+ M      P +V+F  V+ AC+H   ++ G    +Y  R+  D+   + 
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM--LMPPNAVIWRTLLGACTIHGHS 429
                  ++D+  + G +K A  YI N   +   + V W  ++  C +HGH+
Sbjct: 339 -----SSLLDMYAKCGNIKMA-RYIFNKIEMCDRDMVSWTAIIMGCAMHGHA 384



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 134/270 (49%), Gaps = 14/270 (5%)

Query: 58  KLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           K K++H ++IRHG    V + +  +  Y     V LS         F  + + +  +WN+
Sbjct: 217 KGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCA------FHLLSNRDAISWNS 270

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +I G  ++      +  + +M    +KP   ++  ++ A + L  + +G+Q H+  IR G
Sbjct: 271 IIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLG 330

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFEL--MSERDLVAWNSVINGFASNGKPNEALTL 231
           F+   F+ +SL+ MYA  G++K A  +F    M +RD+V+W ++I G A +G   +A++L
Sbjct: 331 FDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSL 390

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYS 290
           F EM  +GV+P     +++ +AC+  G +  G +    + +  G++  +    A+ D   
Sbjct: 391 FEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLG 450

Query: 291 KCGIIIAAQRVFREMRKRNAVS-WSTLVVG 319
           + G +  A      M +    S WSTL+  
Sbjct: 451 RAGRLEEAYDFISNMGEEPTGSVWSTLLAA 480


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 374/665 (56%), Gaps = 63/665 (9%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           H K  +     DL  ++  + H  P ++ + I S+V     +L  C S K   + K+VH 
Sbjct: 234 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV----NILPACGSLKAVPQTKEVHG 289

Query: 65  FSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESA 122
            +IR+G     PD+  G  LI A       M  A  +F+ ++  ++ +WN M+ GY++S 
Sbjct: 290 NAIRNGT---FPDVFVGNALIDAYAKCGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 123 N----------------PL-------------------LAVELYSKMHVSGIKPDTHTYP 147
           N                PL                    A+ L+ +M  SG  P+  T  
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESL----------VFVQNSLVHMYAAFGHVKDA 197
            +L A + L     G + H+ +++N   +L          + V N+L+ MY+     K A
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 198 CKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSA 253
             +F+   + ER++V W  +I G A  G  N+AL LF EM SE  GV P+ YT+  +  A
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 254 CAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           CA L A+ +G++ H YV +     S    V N L+D YSKCG +  A+ VF  M +++A+
Sbjct: 526 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAI 585

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW++++ G  ++G G EAL++F +M   GFVP ++TF+ VLYACSHCGMVD+G SYF  M
Sbjct: 586 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 645

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
             +YG+ P+ EH+ C +DLL R+G + +A+  +++M M P AV+W  LL AC +H +  +
Sbjct: 646 SADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVEL 705

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
           AE A + L+++  ++ G Y L+SN+YA   RW +V  +R  M K  +KK PG S V+   
Sbjct: 706 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 765

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
               FF+GDRSHP + +I+A+L  +  ++K  GYVP T     D++EEEK + L  HSEK
Sbjct: 766 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 825

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+A+ L+ T+PG P+R+ KNLRVC DCH A   ISK+   EIVVRD SRFHHFK+G CS
Sbjct: 826 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 885

Query: 612 CRDYW 616
           C  YW
Sbjct: 886 CGGYW 890



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 9/286 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YA  +   V       WN +IR + +      A+ +  +M  +G +PD  T P +LKA  
Sbjct: 107 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACG 166

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVA 211
           +L   R G   H +   NGFES VF+ N+LV MY+  G +++A  +F+ +++R   D+++
Sbjct: 167 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 226

Query: 212 WNSVINGFASNGKPNEALTLFREMA------SEGVEPDGYTMVSLFSACAELGALALGRR 265
           WNS+++    +     AL LF +M             D  ++V++  AC  L A+   + 
Sbjct: 227 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 286

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    + G   +V V NAL+D Y+KCG++  A +VF  M  ++ VSW+ +V G + +G 
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 346

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            + A ELFK M         VT+  V+   S  G   E  + F++M
Sbjct: 347 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 11/254 (4%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V  Y A G    A  V E ++    V WN +I      G+ + A+ +   M   G  PD
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+  +  AC EL +   G   H  +   G   NV + NAL+  YS+CG +  A  +F 
Sbjct: 155 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 214

Query: 304 EMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEI------GGFVPGEVTFVGVLYA 354
           E+ +R   + +SW+++V     +     AL+LF +M +             ++ V +L A
Sbjct: 215 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 274

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C     V +            G  P +     ++D   + GL++ A + + NM+   + V
Sbjct: 275 CGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVK-VFNMMEFKDVV 332

Query: 415 IWRTLLGACTIHGH 428
            W  ++   +  G+
Sbjct: 333 SWNAMVAGYSQSGN 346


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 348/577 (60%), Gaps = 20/577 (3%)

Query: 48  LLQVC----ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIF 100
           L++ C    A  + +L   H FS       N  +   +LI  ++++      +  A N+F
Sbjct: 22  LIKCCLVRGAVQQARLVHEHVFS-------NGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             + D N+ +W TMI  Y+ S     A++    M   G++P+ +TY  +L+A   L ++R
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR 134

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
              Q H   ++ G ES VFV+++L+  Y+  G   DA  VF  M   DLV WNS+I GFA
Sbjct: 135 ---QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            N   +E L L++ M       D  T+ S+  AC  L  L LGR+ H +V K     ++ 
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLI 249

Query: 281 VNNALLDFYSKCGIIIAAQRVF-REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +NNALLD Y KCG +  A  +F R M +++ +SWST++ GLA NGF  +AL+LF+ M+  
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +T +GVL+ACSH G+V++G+ YF+ MK+ +GI P  EH+GC++DLLGRAG + +
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A + I  M   P+AV WR LLGAC +H +  +A  A   +L+L+P  +G Y+LLSN+YA 
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYAN 429

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            Q+W +V EVRR M    VKK PG S +E+  +V  F +GD SHP+ EEI   L+++ ++
Sbjct: 430 SQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQR 489

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           L   GYVP T  V  D+E E+ ED+L YHSEK+AI F L++      + + KNLR+C DC
Sbjct: 490 LMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDC 549

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H+  KL+S++ +R IV+RD  R+HHF+ G CSC DYW
Sbjct: 550 HIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           MH + +  D  TY  L+K       V+     H     NG+E   F+ N+L++MY  FG 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           + +A  +F+ M +R++V+W ++I+ ++++   ++AL     M  EGV P+ YT  S+  A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C  L  L   R+ H  + KVGL  +V V +AL+D YSK G    A  VF EM   + V W
Sbjct: 127 CDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVW 183

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMK 372
           ++++ G A N  G E L L+K M+   FV  + T   VL AC+   +++ G   +   +K
Sbjct: 184 NSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK 243

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +  ++        ++D+  + G ++ A      M+   + + W T++     +G SA A
Sbjct: 244 YDQDLILN----NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADA 299


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 334/520 (64%), Gaps = 5/520 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ AH +F  +   N+ +W TMI  Y++      A+EL   M   G++P+ +TY  +L+A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + ++DVRM    H   I+ G ES V+V+++L+ ++A  G  +DA  VF+ M   D + W
Sbjct: 124 CNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I GFA N + + AL LF+ M   G   +  T+ S+  AC  L  L LG +AH ++  
Sbjct: 181 NSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI-- 238

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           V    ++ +NNAL+D Y KCG +  A+RVF +M++R+ ++WST++ GLA NG+ +EAL+L
Sbjct: 239 VKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 298

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M+  G  P  +T VGVL+ACSH G++++G+ YF+ MK  YGI P  EH+GCM+DLLG
Sbjct: 299 FELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLG 358

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           +AG +  A + +  M   P+AV WRTLLGAC +  +  +AE A   ++ L+P+ +G Y +
Sbjct: 359 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTV 418

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA  Q+W +V+E+R+ M    +KK PG S +E+  ++  F +GD SHPQ  E++  
Sbjct: 419 LSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKK 478

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++  +L   GYVP T  V  D+E E+ ED+L +HSEK+A+AF L+       +R+ KN
Sbjct: 479 LNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKN 538

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           LR+C DCH+  KL SK+ +R IV+RD  R+HHF+DG CSC
Sbjct: 539 LRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 149/293 (50%), Gaps = 9/293 (3%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+  D+ TY  L+K       V  G         NG + ++F+ N L++MY  F  + DA
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            ++F+ M +R++++W ++I+ ++      +AL L   M  +GV P+ YT  S+  AC  +
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGM 127

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
             +   R  H  + K GL  +V V +AL+D ++K G    A  VF EM   +A+ W++++
Sbjct: 128 SDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 184

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF-SYFKRMKDEYG 376
            G A N     ALELFK M+  GF+  + T   VL AC+   +++ G  ++   +K +  
Sbjct: 185 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQD 244

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           ++        +VD+  + G ++ A   + N +   + + W T++     +G+S
Sbjct: 245 LILN----NALVDMYCKCGSLEDA-RRVFNQMKERDVITWSTMISGLAQNGYS 292



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           + S G+  D  T   L   C    A+  G     +++  G    + + N L++ Y K  +
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A ++F +M +RN +SW+T++   +     ++ALEL   M   G  P   T+  VL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 355 CS--------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           C+        HCG++ EG                +     ++D+  + G  + A      
Sbjct: 124 CNGMSDVRMLHCGIIKEGLE------------SDVYVRSALIDVFAKLGEPEDALSVFDE 171

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIA 432
           M+   +A++W +++G    +  S +A
Sbjct: 172 MV-TGDAIVWNSIIGGFAQNSRSDVA 196


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/525 (43%), Positives = 324/525 (61%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + + ++ +WNTMI GYA++A+   A  ++  M  +G+  D  T   LL A
Sbjct: 212 MGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSA 271

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
            + L  V+ G+  H  A+RN   +   F  NSL+ MY     + DA ++FE +  +D V+
Sbjct: 272 CADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVS 331

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WNS+I G+A NG   E+L LFR MA +G  PD  T +++  AC ++ AL  G   H+Y+ 
Sbjct: 332 WNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLV 391

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K G   N  V  AL+D YSKCG +  ++RVF EM  ++ VSWS +V G  ++G G+EA+ 
Sbjct: 392 KKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAIS 451

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +   M+    +P    F  +L ACSH G+V EG   F +M+ EY + P + H+ CMVDLL
Sbjct: 452 ILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLL 511

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG + +AY  I+ M + P + IW  LL A  +H +  +AEI+   +  + PK    Y+
Sbjct: 512 GRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYI 571

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
            LSN+YA E+RW +V+ VR  + ++ +KK+PG S +EL N V  F +GD+SH QTE+I+A
Sbjct: 572 CLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYA 631

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L E+ ++LK  GY P T  VF D+EEE KE  L  HSE++AIAF L+NT PGT +R+ K
Sbjct: 632 KLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITK 691

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH   KLIS++  REI++RD  RFHHF  G CSC DYW
Sbjct: 692 NLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 212/400 (53%), Gaps = 14/400 (3%)

Query: 34  QENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYL--IYAIVSL 89
           Q+ P+TS+  +C  LLQ   ++K   + +Q+HA  I   +  NN  L   L   YA   L
Sbjct: 53  QQYPLTSL--QCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL 110

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              MS A  IF  +   N F WN MIRGYA +  P+ ++ LY +M   G + D  TYPF+
Sbjct: 111 ---MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFV 167

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA   L  V +G + HS  +  G ES ++V NSL+ MYA FG +  A  VF+ M+ERDL
Sbjct: 168 LKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDL 227

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
            +WN++I+G+A N     A  +F  M   G+  D  T++ L SACA+L A+  G+  H Y
Sbjct: 228 TSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGY 287

Query: 270 VWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
             +  + + N    N+L++ Y  C  ++ A+R+F  +R ++ VSW+++++G A NG   E
Sbjct: 288 AVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFE 347

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           +L LF+ M + G  P +VTF+ VL AC     +  G S    +  + G          +V
Sbjct: 348 SLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIVGTALV 406

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
           D+  + G +  +        MP  +++ W  ++    +HG
Sbjct: 407 DMYSKCGSLACSRRVFDE--MPDKSLVSWSAMVAGYGLHG 444


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/625 (40%), Positives = 352/625 (56%), Gaps = 68/625 (10%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L Q+HA    H +  +N  +   LI +  SL   + YA +IF     PN+F +N +IRG
Sbjct: 55  QLHQIHAQIFLHNL-FSNSRVVTQLISSSCSLK-SLDYALSIFRCFDHPNLFVFNALIRG 112

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            AE++    +V  +  M    I+PD  T PF+LK+++ L DV +G   H   ++ G E  
Sbjct: 113 LAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFD 172

Query: 178 VFVQNSLVHMYAAFGH--------------------------VKDACKV---------FE 202
            FV+ SLV MY   G                           +   CKV         FE
Sbjct: 173 SFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFE 232

Query: 203 LMSER-------------------------------DLVAWNSVINGFASNGKPNEALTL 231
            M ER                               ++V+W ++INGF+ NG   +AL++
Sbjct: 233 AMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSM 292

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F  M  EGV P+  T+VS   AC ++GAL +G R H Y+   G   N  +  AL+D Y+K
Sbjct: 293 FWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAK 352

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG I +A RVF E + ++ ++WS ++ G A++G   +AL+ F +M+  G  P EV F+ +
Sbjct: 353 CGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI 412

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L ACSH G VD+G ++F+ M+ +Y I P ++H+  +VDLLGRAG + +A  +IQ+M + P
Sbjct: 413 LTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINP 472

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           + VIW  L  AC  H +  +AE+    LLQLEPKH G YV LSN+YA   RW +V+ VR 
Sbjct: 473 DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRT 532

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M    V+K PG S +E+  +V  F  GD +H + EEI   L EIT   K EGY+P T  
Sbjct: 533 LMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAW 592

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  +IEEEEKEDAL  HSEK+A+AF L++TAPG+ +R+VKNLRVC DCH  +K  SK+  
Sbjct: 593 VLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR 652

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REI++RD  RFHHFKDG CSC DYW
Sbjct: 653 REIILRDIKRFHHFKDGTCSCGDYW 677


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 374/665 (56%), Gaps = 63/665 (9%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           H K  +     DL  ++  + H  P ++ + I S+V     +L  C S K   + K+VH 
Sbjct: 241 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV----NILPACGSLKAVPQTKEVHG 296

Query: 65  FSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESA 122
            +IR+G     PD+  G  LI A       M  A  +F+ ++  ++ +WN M+ GY++S 
Sbjct: 297 NAIRNGT---FPDVFVGNALIDAYAKCGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 123 N----------------PL-------------------LAVELYSKMHVSGIKPDTHTYP 147
           N                PL                    A+ L+ +M  SG  P+  T  
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESL----------VFVQNSLVHMYAAFGHVKDA 197
            +L A + L     G + H+ +++N   +L          + V N+L+ MY+     K A
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 198 CKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSA 253
             +F+   + ER++V W  +I G A  G  N+AL LF EM SE  GV P+ YT+  +  A
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 254 CAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           CA L A+ +G++ H YV +     S    V N L+D YSKCG +  A+ VF  M +++A+
Sbjct: 533 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAI 592

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW++++ G  ++G G EAL++F +M   GFVP ++TF+ VLYACSHCGMVD+G SYF  M
Sbjct: 593 SWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSM 652

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
             +YG+ P+ EH+ C +DLL R+G + +A+  +++M M P AV+W  LL AC +H +  +
Sbjct: 653 SADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVEL 712

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
           AE A + L+++  ++ G Y L+SN+YA   RW +V  +R  M K  +KK PG S V+   
Sbjct: 713 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 772

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
               FF+GDRSHP + +I+A+L  +  ++K  GYVP T     D++EEEK + L  HSEK
Sbjct: 773 GTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEK 832

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+A+ L+ T+PG P+R+ KNLRVC DCH A   ISK+   EIVVRD SRFHHFK+G CS
Sbjct: 833 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 892

Query: 612 CRDYW 616
           C  YW
Sbjct: 893 CGGYW 897



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 9/286 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YA  +   V       WN +IR + +      A+ +  +M  +G +PD  T P +LKA  
Sbjct: 114 YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACG 173

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVA 211
           +L   R G   H +   NGFES VF+ N+LV MY+  G +++A  +F+ +++R   D+++
Sbjct: 174 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 233

Query: 212 WNSVINGFASNGKPNEALTLFREMA------SEGVEPDGYTMVSLFSACAELGALALGRR 265
           WNS+++    +     AL LF +M             D  ++V++  AC  L A+   + 
Sbjct: 234 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 293

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    + G   +V V NAL+D Y+KCG++  A +VF  M  ++ VSW+ +V G + +G 
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 353

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            + A ELFK M         VT+  V+   S  G   E  + F++M
Sbjct: 354 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 11/254 (4%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V  Y A G    A  V E ++    V WN +I      G+ + A+ +   M   G  PD
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+  +  AC EL +   G   H  +   G   NV + NAL+  YS+CG +  A  +F 
Sbjct: 162 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 221

Query: 304 EMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEI------GGFVPGEVTFVGVLYA 354
           E+ +R   + +SW+++V     +     AL+LF +M +             ++ V +L A
Sbjct: 222 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 281

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C     V +            G  P +     ++D   + GL++ A + + NM+   + V
Sbjct: 282 CGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVK-VFNMMEFKDVV 339

Query: 415 IWRTLLGACTIHGH 428
            W  ++   +  G+
Sbjct: 340 SWNAMVAGYSQSGN 353


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/565 (42%), Positives = 344/565 (60%), Gaps = 28/565 (4%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           S+  +LKQ H+  IR G+  +N  +G+ + +  +S S                       
Sbjct: 31  STMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKS----------------------- 67

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
              GY         + +YS+M    + P+  TYP L++A      +  G+Q H+  ++ G
Sbjct: 68  ---GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG 124

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL--VAWNSVINGFASNGKPNEALTL 231
           F +  F  N+L+HMY  F  ++ A +VF+ M +RD   V+WN++I  +  + + +EA  L
Sbjct: 125 FGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFAL 184

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F  M  E V  D +   S+ SAC  LGAL  G+  H Y+ K G+  +  +   ++D Y K
Sbjct: 185 FDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 244

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A  VF E+ ++   SW+ ++ GLA++G G+ A+ELFKEME     P  +TFV V
Sbjct: 245 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 304

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC+H G+V+EG  YF+ M +  G+ P +EHFGCMVDLLGRAGL+++A + I  M + P
Sbjct: 305 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 364

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           +A +   L+GAC IHG++ + E     +++LEP +SG YVLL+NLYA   RW +V +VR+
Sbjct: 365 DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRK 424

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M    VKK PG S++E  + V EF  G R+HPQ +EI+A L EI + ++  GYVP T+ 
Sbjct: 425 LMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDG 484

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  DI+EEEKE+ L YHSEK+AIAF L+ T PG  +R+ KNLR+C DCH A KLISKVY 
Sbjct: 485 VLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYD 544

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REI++RDR+RFHHF+ G CSC+DYW
Sbjct: 545 REIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/580 (41%), Positives = 351/580 (60%), Gaps = 24/580 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++R    + N  +G  L+    +    +     +F  V D  I  WN MI GYA
Sbjct: 236 KEIHAYALRTDDVIENSFVGSALVDMYCNCG-QVESGRLVFDSVLDRKIGLWNAMIAGYA 294

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +S +   A+ L+ +M  + G+  +  T   ++ A  +   +   E  H   I+ G E+  
Sbjct: 295 QSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNR 354

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS- 237
           ++QN+L+ MY+  G +K + ++F+ M +RD+V+WN++I  +   G+ ++AL L  EM   
Sbjct: 355 YLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRI 414

Query: 238 ------EG---------VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
                 +G          +P+  T++++   CA L ALA G+  H Y  +  L+  V V 
Sbjct: 415 EEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVG 474

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM----EI 338
           +AL+D Y+KCG +  A+RVF +M  RN ++W+ +++   ++G GKE+LELF++M      
Sbjct: 475 SALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAK 534

Query: 339 GGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
           GG V P EVTF+ +  +CSH GMVDEG S F +MK+E+GI P  +H+ C+VDL+GRAG V
Sbjct: 535 GGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKV 594

Query: 398 KQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           ++AY  +  M    + V  W +LLGAC I+ +  I EIA   LLQL+P  +  YVLLSN+
Sbjct: 595 EEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNI 654

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           Y+    W     +RR M    VKK PG S +E G+ V +F  GD SHPQ+E++H  L  +
Sbjct: 655 YSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETL 714

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
           +++LK EGYVP T  V  DI+EEEKE  L  HSEK+AIAF ++NT PGT +RV KNLRVC
Sbjct: 715 SERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVC 774

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH A K ISK+  REI++RD  RFHHFKDG CSC DYW
Sbjct: 775 NDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 187/408 (45%), Gaps = 30/408 (7%)

Query: 60  KQVHAFSIRHG------VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           KQ+HA   + G      V ++N  +  Y           +  A+ +F  + + +  +WN+
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMY------GKCGGLGDAYKVFDRITERDQVSWNS 83

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD---VRMGEQTHSVAI 170
           +I          +A++ +  M + G +P + T   +  A S L     + +G+Q H    
Sbjct: 84  IISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCF 143

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           R G     F  N+L+ MYA  G + DA  +  L  +RDLV WNS+I+ F+ N +  EAL 
Sbjct: 144 RKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALM 202

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFY 289
             R M  EGV+PDG T  S+  AC+ L  L  G+  H Y  +   + +N  V +AL+D Y
Sbjct: 203 FLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMY 262

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME-IGGFVPGEVTF 348
             CG + + + VF  +  R    W+ ++ G A +   ++AL LF EME   G      T 
Sbjct: 263 CNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTM 322

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF----GCMVDLLGRAGLVKQAYEYI 404
             ++ A   C    EG S  K     Y I   +E        ++D+  R G +K +    
Sbjct: 323 SSIVPAYVRC----EGISR-KEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIF 377

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK--HSGDY 450
            +M    + V W T++ +  I G S+ A +    + ++E K  + GDY
Sbjct: 378 DSM-EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDY 424



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL--VFVQNSLVHMYAAFGHV 194
           SG  PD   +P +LKA++ + ++ +G+Q H+   + G+ S   V + N+LV+MY   G +
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            DA KVF+ ++ERD V+WNS+I+      +   A+  FR M  EG EP  +T+VS+  AC
Sbjct: 64  GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC 123

Query: 255 AEL---GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           + L     L LG++ H   ++ G     + NNAL+  Y+K G +  A+ +      R+ V
Sbjct: 124 SNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLV 182

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +W++++   + N    EAL   + M + G  P  VTF  VL ACSH  ++  G
Sbjct: 183 TWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS--DNVNVNNALLDFYSKC 292
           M   G  PD +   ++  A A +  L LG++ H +V+K G     +V ++N L++ Y KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G +  A +VF  + +R+ VSW++++  L      + A++ F+ M + GF P   T V + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 353 YACSH 357
            ACS+
Sbjct: 121 LACSN 125


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 344/595 (57%), Gaps = 43/595 (7%)

Query: 61  QVHAFSIRHGVPLNNP--DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           ++H F+ +    L++P  + G   +YA       ++YA N+F  +   ++ TWNTMI  Y
Sbjct: 135 ELHGFAFKIAT-LSDPFVETGLMDMYAACG---RINYARNVFDEMSQRDVVTWNTMIERY 190

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG----- 173
                   A +L+ +M  S + PD      ++ A  +  ++R     +   I N      
Sbjct: 191 CRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDT 250

Query: 174 ----------------------FESL----VFVQNSLVHMYAAFGHVKDACKVFELMSER 207
                                 F  +    +FV  ++V  Y+  G + DA  +F+    +
Sbjct: 251 HLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMK 310

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           DLV W ++I+ +A +  P EAL +F EM   G++PD  TM+S+ SAC  LG L   +  H
Sbjct: 311 DLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH 370

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            Y    GL   + ++NAL++ Y+KCG + AA+ VF +M  RN VSWS+++   A++G   
Sbjct: 371 RYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEAS 430

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           ++L LF +M+     P EVTFVGVLY CSH G+V+EG   F  M DEY I PKIEH+GCM
Sbjct: 431 DSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCM 490

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           VDL GRA L+++A E I++M M PN VIW +L+ AC +HG   + E+A   +L+LEP H 
Sbjct: 491 VDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHD 550

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G  VL+SN+YA E RW  V+ +R  M K++V K  G S ++L  +  EF +GD+ H Q+ 
Sbjct: 551 GALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSN 610

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP- 566
           EI+  L E+  KLKL GYVP   +V  D+EEEEK+D + +HSEK+A+ F L+N       
Sbjct: 611 EIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEK 670

Query: 567 -----VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
                +R+VKNLRVC DCH   KL+SKVY  EI+VRDR+RFH +KDG CSCRDYW
Sbjct: 671 GSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 201/434 (46%), Gaps = 37/434 (8%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           + P  + +   S     +  L  C S  H +KQ+HA  +R    +N+         +  S
Sbjct: 2   TLPPPRPSFAVSAANTILEKLSFCKSLNH-IKQLHAHILR--TVINHKLNSFLFNLSFSS 58

Query: 89  LSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
            S  +SYA N+FS +   P    +N+++R  + S  P   +  Y ++   G + D  ++P
Sbjct: 59  SSINLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFP 118

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +LKA+SK++ +  G + H  A +    S  FV+  L+ MYAA G +  A  VF+ MS+R
Sbjct: 119 PILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQR 178

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D+V WN++I  +   G  +EA  LF EM    V PD   + ++ SAC   G +   R  +
Sbjct: 179 DVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 238

Query: 268 TYVWK-------------------VGLSD------------NVNVNNALLDFYSKCGIII 296
            ++ +                    G  D            N+ V+ A++  YSK G + 
Sbjct: 239 DFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLD 298

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+ +F +   ++ V W+T++   A +   +EAL +F+EM   G  P  VT + V+ AC 
Sbjct: 299 DARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACV 358

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           + G +D+   +  R     G+   +     ++++  + G +  A +  + M    N V W
Sbjct: 359 NLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKM-PTRNVVSW 416

Query: 417 RTLLGACTIHGHSA 430
            +++ A  +HG ++
Sbjct: 417 SSMINAFAMHGEAS 430


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/596 (41%), Positives = 348/596 (58%), Gaps = 40/596 (6%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +LKQ+ A  I+  + +  P L  K+L          + YA  +F+ +  PN F WN +IR
Sbjct: 3   QLKQIQAQMIKTAI-ITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIR 61

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE--QTHSVAIRNGF 174
            Y+ S  P LA   Y +M  S +  +++T+PFLL+A   L  + MGE  Q H + I+ GF
Sbjct: 62  AYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNL--LAMGEALQVHGLVIKLGF 119

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN--------------------- 213
            S VF  N+L+H+YA  G +  A ++F+ + ERD V+WN                     
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLD 179

Query: 214 ----------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
                     S+I+G    G+  EAL+L  EM + G E DG  + SL +ACA LGAL  G
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQG 239

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLA 321
           R  H YV   G+  +  +  AL++ Y KCG +  A  VF +++  +++   W+ ++ G A
Sbjct: 240 RWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFA 299

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
           ++G G EALE F  M   G  P  +TF  VL ACS+ G+V+EG   FK MK  Y + P I
Sbjct: 300 IHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSI 359

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+GCMVDLLGR+G + +A E I+ M M P+AVIW  LL AC IH    +     + L++
Sbjct: 360 EHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVE 419

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           ++  HSG Y+ L+ + A E +W    EVR  M    V  +PG S V L   V EF  G +
Sbjct: 420 VDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQ 479

Query: 502 SHPQTEEIHAMLAEITKKLKL-EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
            HPQ E+I   L +I ++L+  EGY P T+++  D+E EEKE A++ HSEK+AIAF L+N
Sbjct: 480 DHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLIN 539

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T PGT +RV+KNLR+C DCH   KL+S++YSREI++RDR RFHHF+DG CSC+DYW
Sbjct: 540 TKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 361/603 (59%), Gaps = 31/603 (5%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVH--AFSIRHGVPLNNPDLGKYLIYAIVS 88
           P     P T  ++ C +L  +CA      KQ+H  AF   +G  +       ++  A++ 
Sbjct: 84  PNRSTFPCT--IKSCSSLYDLCAG-----KQIHQQAFVFGYGSDI-------FVASALID 129

Query: 89  LSFPMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL-----------YSKM 134
           +     Y   A  +F  + + N+ +W +MI GY ++     AV L           Y ++
Sbjct: 130 MYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEI 189

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
              G+  D+     ++ A +++    + E  H +A++ GFE  + V N+L+  YA  G +
Sbjct: 190 VGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEI 249

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSA 253
             + KVF+ M E D+ +WNS+I  +A NG   EA +LF +M   G V  +  T+ ++  A
Sbjct: 250 SVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLA 309

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA  GAL +G+  H  V K+ L DN+ V  +++D Y KCG +  A++ F  ++++N  SW
Sbjct: 310 CAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSW 369

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + +V G  ++G GKEA+++F EM   G  P  +TFV VL ACSH G++ EG+ +F +MK 
Sbjct: 370 TVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKC 429

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           E+ + P IEH+ CMVDLLGRAG +K+AY  IQ M + P+ ++W +LLGAC IH +  + E
Sbjct: 430 EFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGE 489

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
           I+   L +L+P + G YVLLSN+YA   RW +V+ +R  M    + KTPG+S+VE   RV
Sbjct: 490 ISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRV 549

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
             F +GD+ HPQ E+I+  L E+  KL+  GY+P   +V  D++ EEK   L  HSEK+A
Sbjct: 550 HVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLA 609

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +AF ++N+ PG+ ++++KNLR+C DCH AIKLISK+ +REIV+RD  RFHHFKDG CSC 
Sbjct: 610 VAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCG 669

Query: 614 DYW 616
           DYW
Sbjct: 670 DYW 672



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 175/342 (51%), Gaps = 20/342 (5%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   ++++WN++I  +A S + L A+  +S M    + P+  T+P  +K+ S L D+  
Sbjct: 45  YVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCA 104

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+Q H  A   G+ S +FV ++L+ MY+  G++ DA K+F+ + ER++V+W S+I+G+  
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 222 NGKPNEALTLFR-----------EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           N +  EA+ LF+           E+   GV  D   +  + SACA +   ++    H   
Sbjct: 165 NERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLA 224

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K G    + V N L+D Y+KCG I  +++VF  M + +  SW++L+   A NG   EA 
Sbjct: 225 VKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAF 284

Query: 331 ELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF---GC 386
            LF +M   G V    VT   VL AC+H G +  G    K + D+   M   ++      
Sbjct: 285 SLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG----KCIHDQVVKMELEDNLVVGTS 340

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +VD+  + G V+ A +   + L   N   W  ++    +HGH
Sbjct: 341 IVDMYCKCGRVEMARKAF-DRLKRKNVKSWTVMVAGYGMHGH 381


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/587 (39%), Positives = 345/587 (58%), Gaps = 33/587 (5%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++H  + + G  +++P +   LI    S    M  A  +F  +  P+   WN +I GY +
Sbjct: 142 EIHGLASKLGF-VDDPFIQTGLIAMYASCRRIMD-ARLLFDKMCHPDAVAWNMIIDGYCQ 199

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           + +   A+ L+  M  S +KPD+     +L A     ++  G   H     NG+     +
Sbjct: 200 NGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHL 259

Query: 181 QNSLVHMYA-------------------------------AFGHVKDACKVFELMSERDL 209
           Q +L++MYA                                 G VKDA  +F+ M ERDL
Sbjct: 260 QTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDL 319

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V W+++I+G+A + +P EAL LF EM  +   PD  TM+S+ SAC+ +GALA     HTY
Sbjct: 320 VCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTY 379

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V + G    ++VNNAL+D Y+KCG ++ A+ VF  M ++N +SWS+++   A++G    A
Sbjct: 380 VDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSA 439

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           ++LF+ M+     P  VTF+GVLYAC H G+V+EG   F  M +E+GI P  EH+GCMVD
Sbjct: 440 IKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVD 499

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           L  RA  +++A E I+ M   PN +IW +L+ AC +HG + + E A   LL+LEP H G 
Sbjct: 500 LYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGA 559

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
            V+LSN+YA E+RW +V  +R++M  + + K    S +E+ N+V  F M DR H Q++EI
Sbjct: 560 LVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEI 619

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L E+  KLKL GY P T  +  D+EEE+K++ + +HSEK+A+ + L++    + +R+
Sbjct: 620 YEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRI 679

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLR+C DCH  +KL+SKVY  EIVVRDR+RFHH   G CSCRDYW
Sbjct: 680 VKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 190/380 (50%), Gaps = 36/380 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH-VSGIKPDTHTYPFLLKAISKLA 157
           +FS + +P+    N ++R  + S+ P   + LY  +  ++    D  ++P LLKA+SK++
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
               G + H +A + GF    F+Q  L+ MYA+   + DA  +F+ M   D VAWN +I+
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+  NG  ++AL LF +M S  ++PD   + ++ SAC   G L+ GR  H +V   G + 
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 278 NVNVNNALLDFYSKCGIIIAAQR-------------------------------VFREMR 306
           + ++  AL++ Y+ CG +  A++                               +F +M 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           +R+ V WS ++ G A +   +EAL+LF EM     VP ++T + V+ ACSH G + +  +
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-N 374

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +     D  G    +     ++D+  + G + +A E  +NM    N + W +++ A  +H
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENM-PRKNVISWSSMINAFAMH 433

Query: 427 GH--SAIAEIARSTLLQLEP 444
           G+  SAI    R   + +EP
Sbjct: 434 GNADSAIKLFRRMKEVNIEP 453


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/557 (40%), Positives = 347/557 (62%), Gaps = 33/557 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F+ +++ ++ +WN+MI G+ +  +P  A+EL+ KM    +K    T   +L A
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 243

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---- 208
            +K+ D+  G +  S    N     + + N+++ MY   G ++DA ++F+ M E+D    
Sbjct: 244 CAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 303

Query: 209 ---------------------------LVAWNSVINGFASNGKPNEALTLFREMA-SEGV 240
                                      +VAWN++I+ +  NGKPNEAL +F E+   + +
Sbjct: 304 TTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNI 363

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           + +  T+VS  SACA++GAL LGR  H+Y+ K G+  N  V +AL+  YSKCG +  A+ 
Sbjct: 364 KLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKARE 423

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + KR+   WS ++ GLA++G G EA+++F +M+     P  VTF  V  ACSH G+
Sbjct: 424 VFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 483

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDE  S F +M+  YGI+P+ +H+ C+VD+LGR+G +++A ++I+ M +PP+  +W  LL
Sbjct: 484 VDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 543

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC IH + ++AE+A + LL+LEP++ G +VLLSN+YA   +W NV E+R+ M    +KK
Sbjct: 544 GACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKK 603

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+   + EF  GD +HP +E+++  L E+ +KLK  GY P   +V   IEEEE
Sbjct: 604 EPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEE 663

Query: 541 -KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE +L+ HSEK+AI + L++T     +RV+KNLR+C DCH   KLIS++Y+REI+VRDR
Sbjct: 664 MKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDR 723

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHF++G CSC D+W
Sbjct: 724 YRFHHFRNGQCSCNDFW 740



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 43/422 (10%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           R  I+L+  C SS  +LKQ HA  IR G+  +     K    A +S    + YA  +F  
Sbjct: 32  RHTISLIDRC-SSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDE 90

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTHTYPFLLKAISKLADVR 160
           +  PN FTWNT+IR YA   +P+ ++  +  M    S   P+ +T+PFL+KA ++++ + 
Sbjct: 91  IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           +G+  H +AI++   S VFV NSL+H Y + G +  ACKVF  + E+D+V+WNS+INGF 
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
             G P++AL LF++M SE V+    TMV + SACA++  L  GRR  +Y+ +  ++ N+ 
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLT 270

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV------------------ 322
           + NA+LD Y+KCG I  A+R+F  M +++ V+W+T++ G A+                  
Sbjct: 271 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKD 330

Query: 323 -------------NGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEG---F 365
                        NG   EAL +F E+++   +   ++T V  L AC+  G ++ G    
Sbjct: 331 IVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIH 390

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           SY K+     GI         ++ +  + G +++A E + N +   +  +W  ++G   +
Sbjct: 391 SYIKK----NGIKMNFYVTSALIHMYSKCGDLEKARE-VFNSVEKRDVFVWSAMIGGLAM 445

Query: 426 HG 427
           HG
Sbjct: 446 HG 447



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 19/317 (5%)

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMSERDLV 210
           I + + +R  +QTH+  IR G  S  +  + L  + A  +F  ++ A KVF+ + + +  
Sbjct: 38  IDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSF 97

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMVSLFSACAELGALALGRRAHT 268
            WN++I  +AS   P  ++  F +M S   +  P+ YT   L  A AE+ +L+LG+  H 
Sbjct: 98  TWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 157

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              K  +  +V V N+L+  Y  CG + +A +VF  +++++ VSW++++ G    G   +
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 217

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFG 385
           ALELFK+ME        VT VGVL AC+    ++ G    SY     +E  +   +    
Sbjct: 218 ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYI----EENRVNVNLTLAN 273

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            M+D+  + G ++ A      M    N V W T+L    I   S   E AR  L  +  K
Sbjct: 274 AMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAI---SEDYEAAREVLNAMPKK 329

Query: 446 HSGDYVLLSNLY-AYEQ 461
              D V  + L  AYEQ
Sbjct: 330 ---DIVAWNALISAYEQ 343


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 378/661 (57%), Gaps = 75/661 (11%)

Query: 27  YHSTPASQENPITSVVRKCITLL--QVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI- 83
           +H  P       + +  K I  L    C +S H LKQ HA  +R G  L +  +   L+ 
Sbjct: 16  HHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTG-HLQDSYIAGSLVK 74

Query: 84  -YAIVSLSFPMSYAHN--IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--- 137
            YA VS +  +S+  +  +F  V+ PN+F WN MI+   E+  P  A+ LY +M V+   
Sbjct: 75  SYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFR 134

Query: 138 --------------------------------GIKPDTH----------TYPFLLKAISK 155
                                           G+  D H          ++  L++A   
Sbjct: 135 PNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 194

Query: 156 LAD-----------------VRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKD 196
           L D                 +R GE   +  +  G    S++   N+++  ++  G V+ 
Sbjct: 195 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 254

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A + F+ M ERD ++W+++I+G+   G   EAL +F +M  E + P  + + S+ SACA 
Sbjct: 255 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 314

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGAL  GR  HTY  +  +  +  +  +L+D Y+KCG I  A  VF +M  +   SW+ +
Sbjct: 315 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 374

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + GLA++G  ++A++LF +M+I    P E+TFVGVL AC+H G+V +G + F  M+ EYG
Sbjct: 375 IGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 431

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           + P+IEH+GC+VDLLGRAGL+ +A + + ++   P   +W  LLGAC  HG+  + E   
Sbjct: 432 VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVG 491

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG-NRVFE 495
             LL+LEP++SG Y LLSN+YA   RW  V EVR+ M +  +K TPG S+++LG   V +
Sbjct: 492 KILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHK 551

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIA 555
           F +GD SHPQ ++I+ ML ++ ++L++EGY P    V  DI+EEEKE A+  HSEK+AI 
Sbjct: 552 FIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIG 611

Query: 556 FMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           F L+NT+PGT +R+VKNLRVC DCH A KLIS+VY+REI+VRDR R+HHF++G CSC+D+
Sbjct: 612 FGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDF 671

Query: 616 W 616
           W
Sbjct: 672 W 672


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/558 (43%), Positives = 341/558 (61%), Gaps = 3/558 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +K+VH  ++  G+ +++  +G   ++  +     +  A  IF  +   N+ TWN MI G 
Sbjct: 354 VKEVHKHAVEVGL-VSDLRVGSAFVHMYIRCG-SIDDAQLIFDKLAVRNVTTWNAMIGGV 411

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A+      A+ L+ +M   G  PD  T+  +L A      +   ++ HS AI  G   L 
Sbjct: 412 AQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLR 471

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V N+LVHMYA  G+   A +VF+ M ER++  W  +I+G A +G  +EA +LF +M  E
Sbjct: 472 -VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLRE 530

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+ PD  T VS+ SACA  GAL   +  H++    GL  ++ V NAL+  Y+KCG +  A
Sbjct: 531 GIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDA 590

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +RVF +M +R+  SW+ ++ GLA +G G +AL+LF +M++ GF P   +FV VL ACSH 
Sbjct: 591 RRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHA 650

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+VDEG   F  +  +YGI P +EH+ CMVDLLGRAG +++A  +I NM + P    W  
Sbjct: 651 GLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGA 710

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGAC  +G+  +AE A    L+L+PK +  YVLLSN+YA    W     VR  M +  +
Sbjct: 711 LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K PG S +E+ N++  F +GD SHP+++EI+A L ++ K+LK EGYVP T  V  + ++
Sbjct: 771 RKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQ 830

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           E KE AL  HSEK+AI + L++T    P+RV KNLRVC+DCH A K ISKV  REIV RD
Sbjct: 831 EYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARD 890

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHFKDG CSC DYW
Sbjct: 891 AKRFHHFKDGVCSCGDYW 908



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 190/374 (50%), Gaps = 13/374 (3%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +K+VH+ ++  G+ L+   +G  L++ + + S  +  A  +F  + + +IF+W  MI G 
Sbjct: 150 VKEVHSHAVNAGLALD-LRVGNALVH-MYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA--ISKLADVRMGEQTHSVAIRNGFES 176
           A+      A  L+ +M   G  P+  TY  +L A  I+    +   ++ H  A + GF S
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS 267

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + V N+L+HMYA  G + DA  VF+ M +RD+++WN++I G A NG  +EA T+F +M 
Sbjct: 268 DLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQ 327

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG  PD  T +SL +     GA    +  H +  +VGL  ++ V +A +  Y +CG I 
Sbjct: 328 QEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSID 387

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            AQ +F ++  RN  +W+ ++ G+A    G+EAL LF +M   GF P   TFV +L A  
Sbjct: 388 DAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA-- 445

Query: 357 HCGMVDEGFSYFKRMKDEYGI---MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
              + +E   + K +   Y I   +  +     +V +  + G    A +   +M+   N 
Sbjct: 446 --NVGEEALEWVKEVH-SYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMV-ERNV 501

Query: 414 VIWRTLLGACTIHG 427
             W  ++     HG
Sbjct: 502 TTWTVMISGLAQHG 515



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MI GYAE      A+++YS+M   G +P+  TY  +LKA      ++ G++ H+  I++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F+S V V+ +LV+MY   G + DA  +F+ M ER++++W  +I G A  G+  EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           +M  EG  P+ YT VS+ +A A  GAL   +  H++    GL+ ++ V NAL+  Y+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL- 352
            I  A+ VF  M +R+  SW+ ++ GLA +G G+EA  LF +ME GG +P   T++ +L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 353 -YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
             A +  G + E      +   + G +  +     ++ +  + G +  A      M    
Sbjct: 241 ASAITSTGAL-EWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC-DR 298

Query: 412 NAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
           + + W  ++G    +  GH A     +       P  S  Y+ L N +     W  V+EV
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPD-STTYLSLLNTHVSTGAWEWVKEV 357

Query: 470 RRTMVK 475
            +  V+
Sbjct: 358 HKHAVE 363



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 190/395 (48%), Gaps = 13/395 (3%)

Query: 32  ASQENPITSVVRKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
             Q N IT      +++L+ C S  S    K++HA  I+ G   ++  +   L+   V  
Sbjct: 25  GGQPNEITY-----LSILKACCSPVSLKWGKKIHAHIIQSGFQ-SDVRVETALVNMYVKC 78

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              +  A  IF  + + N+ +W  MI G A       A   + +M   G  P+++TY  +
Sbjct: 79  G-SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSI 137

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A +    +   ++ HS A+  G    + V N+LVHMYA  G + DA  VF+ M ERD+
Sbjct: 138 LNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDI 197

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA--ELGALALGRRAH 267
            +W  +I G A +G+  EA +LF +M   G  P+  T +S+ +A A    GAL   +  H
Sbjct: 198 FSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVH 257

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            +  K G   ++ V NAL+  Y+KCG I  A+ VF  M  R+ +SW+ ++ GLA NG G 
Sbjct: 258 KHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGH 317

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EA  +F +M+  GFVP   T++ +L      G   E      +   E G++  +      
Sbjct: 318 EAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW-EWVKEVHKHAVEVGLVSDLRVGSAF 376

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           V +  R G +  A + I + L   N   W  ++G 
Sbjct: 377 VHMYIRCGSIDDA-QLIFDKLAVRNVTTWNAMIGG 410


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 361/582 (62%), Gaps = 7/582 (1%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAH 97
           TS     +T+LQ C ++  +LK++ A  I +G+  N+P +   ++ +  VS+S  + YA 
Sbjct: 6   TSKANAILTVLQGC-NNLTRLKKIQAHVIVNGLQ-NHPAISNSILNFCAVSISGSLPYAQ 63

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKL 156
           ++F H+ +P    WN++IRG+A+S +P+ A+  Y++M    +  PDT T+ F LKA  ++
Sbjct: 64  HLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERI 123

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             ++  E+ H   IR G+E  V V   LV  Y   G V+ A  VF+ M ERDLVAWN++I
Sbjct: 124 KALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMI 183

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           + ++  G   EAL ++  M +E V  DG+T+V L S+C+ +GAL +G + H    + GL 
Sbjct: 184 SCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLL 243

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            NV V NAL+D Y+KCG +  A  VF  M  R+A +W++++VG  V+GFG EA+  F +M
Sbjct: 244 RNVFVGNALIDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQM 302

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              G  P  + F+G+L  CSH G+V+EG  +F +M  ++ + P I+H+GC+VD+ GRAG 
Sbjct: 303 LEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGK 362

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++A E I +     + V+WR LL +  IH +  I EIA   L QL   ++GD VLL+ +
Sbjct: 363 LEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATI 422

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA       V  +R+ + K+ +K TPG S +E+ ++V  F + D+SHP +E I+  L E+
Sbjct: 423 YAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEV 482

Query: 517 TKKLKLEGYV-PRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           T K  + GYV  +++ +F     EE  E + +YHSEK+AIAF L  T  GT +R+VKNLR
Sbjct: 483 THKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLR 542

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH   K +S+ ++R+I+VRDR RFHHFK G CSCRDYW
Sbjct: 543 VCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/604 (40%), Positives = 357/604 (59%), Gaps = 21/604 (3%)

Query: 22  RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           R  SLY   P     P    ++ C +LL +  S K   +Q   F  +  + +++      
Sbjct: 68  RKLSLY---PTRSSFPCA--IKACSSLLDI-FSGKQTHQQAFVFGYQSDIFVSSA----- 116

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
            +  + S    +  A  +F  +   NI +W +MIRGY  + N L AV L+  + +     
Sbjct: 117 -LIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDD 175

Query: 142 DTHTY------PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH-- 193
           D   +        ++ A S++A   + E  HS  I+ GF+  V V N+L+  YA  G   
Sbjct: 176 DATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP-DGYTMVSLFS 252
           V  A K+F+ + ++D V++NS+++ +A +G  NEA  +FR +  E V   +  T+ ++  
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLL 295

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           A +  GAL +G+  H  V ++GL D+V V  +++D Y KCG +  A+  F  M+ +N  S
Sbjct: 296 AVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRS 355

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ ++ G  ++G   +ALELF  M   G  P  +TFV VL ACSH G+ D G+ +F  MK
Sbjct: 356 WTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMK 415

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             +G+ P +EH+GCMVDLLGRAG +++AY+ IQ M M P+++IW +LL AC IH +  +A
Sbjct: 416 GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELA 475

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           EI+ + L +L+P + G Y+LLS++YA   RW +V+ VR TM    + K PG SL+EL   
Sbjct: 476 EISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGE 535

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
           V  F +GD  HPQ E+I+  LAE+ +KL   GYV  T +V  D++EEEKE  L  HSEK+
Sbjct: 536 VHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL 595

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AIAF ++NT PG+ V VVKNLRVC+DCH  IKLISK+  RE VVRD  RFHHFKDG CSC
Sbjct: 596 AIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSC 655

Query: 613 RDYW 616
            DYW
Sbjct: 656 GDYW 659



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 181/345 (52%), Gaps = 21/345 (6%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   ++F+WN++I   A S +   A+  +S M    + P   ++P  +KA S L D+  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFS 94

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+QTH  A   G++S +FV ++L+ MY+  G ++DA KVF+ + +R++V+W S+I G+  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 222 NGKPNEALTLFREMASEGVEPDGYT------MVSLFSACAELGALALGRRAHTYVWKVGL 275
           NG   +A++LF+++  E  + D         MVS+ SAC+ + A  L    H++V K G 
Sbjct: 155 NGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGF 214

Query: 276 SDNVNVNNALLDFYSKCGI--IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
              V+V N LLD Y+K G   +  A+++F ++  ++ VS+++++   A +G   EA ++F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVF 274

Query: 334 KEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKR-----MKDEYGIMPKIEHFGCM 387
           + +     V    +T   VL A SH G +  G     +     ++D+  +   I    C 
Sbjct: 275 RRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
               GR    + A++ ++N     N   W  ++    +HGH+A A
Sbjct: 335 C---GRVETARLAFDRMKN----KNVRSWTAMIAGYGMHGHAAKA 372


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 378/661 (57%), Gaps = 75/661 (11%)

Query: 27  YHSTPASQENPITSVVRKCITLL--QVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI- 83
           +H  P       + +  K I  L    C +S H LKQ HA  +R G  L +  +   L+ 
Sbjct: 17  HHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTG-HLQDSYIAGSLVK 75

Query: 84  -YAIVSLSFPMSYAHN--IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--- 137
            YA VS +  +S+  +  +F  V+ PN+F WN MI+   E+  P  A+ LY +M V+   
Sbjct: 76  SYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSR 135

Query: 138 --------------------------------GIKPDTH----------TYPFLLKAISK 155
                                           G+  D H          ++  L++A   
Sbjct: 136 PNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 195

Query: 156 LAD-----------------VRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKD 196
           L D                 +R GE   +  +  G    S++   N+++  ++  G V+ 
Sbjct: 196 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 255

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A + F+ M ERD ++W+++I+G+   G   EAL +F +M  E + P  + + S+ SACA 
Sbjct: 256 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 315

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           LGAL  GR  HTY  +  +  +  +  +L+D Y+KCG I  A  VF +M  +   SW+ +
Sbjct: 316 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 375

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + GLA++G  ++A++LF +M+I    P E+TFVGVL AC+H G+V +G + F  M+ EYG
Sbjct: 376 IGGLAMHGRAEDAIDLFSKMDI---YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 432

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           + P+IEH+GC+VDLLGRAGL+ +A + + ++   P   +W  LLGAC  HG+  + E   
Sbjct: 433 VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVG 492

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG-NRVFE 495
             LL+LEP++SG Y LLSN+YA   RW  V EVR+ M +  +K TPG S+++LG   V +
Sbjct: 493 KILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHK 552

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIA 555
           F +GD SHPQ ++I+ ML ++ ++L++EGY P    V  DI+EEEKE A+  HSEK+AI 
Sbjct: 553 FIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIG 612

Query: 556 FMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           F L+NT+PGT +R+VKNLRVC DCH A KLIS+VY+REI+VRDR R+HHF++G CSC+D+
Sbjct: 613 FGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDF 672

Query: 616 W 616
           W
Sbjct: 673 W 673


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/577 (43%), Positives = 358/577 (62%), Gaps = 20/577 (3%)

Query: 58  KLKQVHAFSIRHGVPLNNPD---LGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNT 113
           +LKQ+HA ++R  V  N+P+   L   ++    SL+ P ++YA  +F H  +PN F WNT
Sbjct: 37  QLKQIHAQTLR-TVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNT 95

Query: 114 MIRGYAESANP---LLAVELYSKMHVSGIK---PDTHTYPFLLKAISKLADVRMGEQTHS 167
           +IR YA S N      A+ELY  M     K   PD HT+P +LKA +    +  G+Q H+
Sbjct: 96  LIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHA 155

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             +++GFES  ++ NSLVH YA  G +  A K+F  MSER+ V+WN +I+ +A  G  + 
Sbjct: 156 HVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDT 215

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV---GLSDNVNVNNA 284
           AL +F EM     +PDGYTM S+ SACA LGAL+LG   H Y+ K     + D+V VN  
Sbjct: 216 ALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTC 274

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVP 343
           L+D Y K G +  A++VF  M  R+  +W+++++GLA++G  K AL  +  M ++   VP
Sbjct: 275 LVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVP 334

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             +TFVGVL AC+H GMVDEG  +F  M  EY + P++EH+GC+VDL  RAG + +A   
Sbjct: 335 NSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNL 394

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSA-IAEIARSTLLQLEPK--HSGDYVLLSNLYAYE 460
           +  M + P+AVIWR+LL AC     S  ++E     + + E     SG YVLLS +YA  
Sbjct: 395 VSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYASA 454

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            RW +V  +R+ M ++ V K PG S++E+   V EFF GD +HP++E I+ ++ EI +KL
Sbjct: 455 CRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKL 514

Query: 521 KLEGYVPRTENV-FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +  GY+P        D   + K + L  HSE++AIAF ++N+ P  P+RV KNLRVC DC
Sbjct: 515 ESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDC 574

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H   KLIS++Y+ EI+VRDR+RFHHFKDG CSC DYW
Sbjct: 575 HRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/562 (40%), Positives = 351/562 (62%), Gaps = 8/562 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+H  ++R G+  ++P     L++     S PM  A   F  + DPN      M  GY  
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMD-ARRAFDEIPDPNPVIVTAMASGYVR 172

Query: 121 SANPLLAVELYSKMHVSGIKP--DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +     ++EL+  M  S      D         A +++ D  +    H++  + GFE   
Sbjct: 173 NNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNA 232

Query: 179 FVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM- 235
            V N+++  YA  G   ++ A KVF+ M ERD+V+WNS+I  +A NG   EA+ L+ +M 
Sbjct: 233 GVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKML 291

Query: 236 -ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
               G++ +   + ++  ACA  GA+  G+R H  V ++GL +NV V  +++D YSKCG 
Sbjct: 292 NVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGR 351

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A R FR+++++N +SWS ++ G  ++G G+EALE+F EM+  G  P  +TF+ VL A
Sbjct: 352 VEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAA 411

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G++DEG  ++  MK E+GI   +EH+GCMVDLLGRAG + +AY  I+ M + P+A 
Sbjct: 412 CSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAA 471

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           IW  LL AC IH +  +AE++   L +L+  +SG YVLLSN+YA  + W +V+ +R  + 
Sbjct: 472 IWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVK 531

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
             R++K PG+S  EL  +++ F++GD+SHPQ  EI++ L ++ ++++  GYVP T +V  
Sbjct: 532 TRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLH 591

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D++EEEKE AL  HSEK+A+AF L+N+ P + + ++KNLRVC+DCH A+K I+K+  REI
Sbjct: 592 DLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREI 651

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD  RFHHFKDG CSCRDYW
Sbjct: 652 IIRDLQRFHHFKDGLCSCRDYW 673


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/580 (41%), Positives = 343/580 (59%), Gaps = 8/580 (1%)

Query: 38  ITSVVRKCITLLQ-VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           ITSV+R C +L +  C       +QVH  +++ G+ L++       +  + S    M  A
Sbjct: 401 ITSVLRACSSLEESYCVG-----RQVHTCALKAGIVLDS--FVSTALIDVYSKGGKMEEA 453

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F +    ++ +WN M+ G+  S N   A+ L+S MH  G K D  T+    KA   L
Sbjct: 454 ELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCL 513

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             ++ G+Q H+V I+  F   +FV + ++ MY   G +K A KVF  +   D VAW +VI
Sbjct: 514 VRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVI 573

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +G   NG+  +AL  + +M   GV+PD YT  +L  AC+ L AL  G++ H  + K+  +
Sbjct: 574 SGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCA 633

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +  V  +L+D Y+KCG I  A  +FR M  R+   W+ ++VGLA +G  +EAL  F EM
Sbjct: 634 FDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEM 693

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           +  G  P  VTF+GVL ACSH G+  + +  F  M+  YG+ P+IEH+ C+VD L RAG 
Sbjct: 694 KSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGH 753

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++A + + +M    +A ++RTLL AC + G     E     L  ++P  S  YVLLSN+
Sbjct: 754 IQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNI 813

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA   +W N    R  M +  VKK PG S +++ N+V  F  GDRSH +T+ I+  +  +
Sbjct: 814 YAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYV 873

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            K++K EGYVP TE    DIEEE+KE ALSYHSEK+AIA+ L+ T P T +RV+KNLRVC
Sbjct: 874 MKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVC 933

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIK IS V+ REIV+RD +RFHHF+ G CSC DYW
Sbjct: 934 GDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 194/392 (49%), Gaps = 17/392 (4%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I +L V AS  H    KQ+H   +R G    V + N  +  Y+    V+      YA  +
Sbjct: 301 IVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVN------YARRM 354

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +++ ++ +WNT+I G A S     ++ L+  +  SG+ PD  T   +L+A S L + 
Sbjct: 355 FGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEES 414

Query: 160 R-MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
             +G Q H+ A++ G     FV  +L+ +Y+  G +++A  +F      DL +WN++++G
Sbjct: 415 YCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHG 474

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           F  +    EAL LF  M   G + D  T  +   A   L  L  G++ H  V K+    +
Sbjct: 475 FTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYD 534

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V + +LD Y KCG + +A++VF ++   + V+W+T++ G   NG  ++AL  + +M +
Sbjct: 535 LFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRL 594

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
            G  P E TF  ++ ACS    +++G   +   MK      P +     +VD+  + G +
Sbjct: 595 AGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNI 652

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           + AY   + M    +  +W  ++     HG++
Sbjct: 653 EDAYGLFRRM-NTRSVALWNAMIVGLAQHGNA 683



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 171/341 (50%), Gaps = 15/341 (4%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           +YA  +F    D ++  WN  +  Y ++     AV+ +  M  S +  D+ TY  +L  +
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVV 307

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L  + +G+Q H   +R G++  V V NS ++MY   G V  A ++F  M E DL++WN
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWK 272
           +VI+G A +G    +L LF ++   G+ PD +T+ S+  AC+ L  +  +GR+ HT   K
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+  +  V+ AL+D YSK G +  A+ +F      +  SW+ ++ G  V+   +EAL L
Sbjct: 428 AGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRL 487

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE-HFGCMV--- 388
           F  M   G    ++TF     A      + +G       K  + ++ K+  H+   V   
Sbjct: 488 FSLMHERGEKADQITFANAAKAAGCLVRLQQG-------KQIHAVVIKMRFHYDLFVISG 540

Query: 389 --DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             D+  + G +K A + + N +  P+ V W T++  C  +G
Sbjct: 541 ILDMYLKCGEMKSARK-VFNQIPSPDDVAWTTVISGCVENG 580



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 9/215 (4%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL-- 203
           +  L  AI+  +D+ +G++TH+V + +G     +V N+L+ MYA  G +  A K+F++  
Sbjct: 17  FSILRHAIAD-SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 204 MSERDLVAWNSVINGFASNG------KPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            S+RDLV +N+++  +A  G      K +EA  +FR +    +    +T+  LF  C   
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           G+ +       Y  K+GL  +V V  AL++ Y+K   I  A+ +F  M  R+ V W+ ++
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
                 G G E L LF      G  P  V+   +L
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 165/389 (42%), Gaps = 36/389 (9%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHV--QDPNIFTWNTM 114
           K+ HA  +  G+   NPD  +Y+   ++++      +  A  +F      D ++ T+N +
Sbjct: 33  KRTHAVIVTSGL---NPD--RYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAI 87

Query: 115 IRGYAESANPLLAVELYSKMHV------SGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
           +  YA +       + +   H+      S +    HT   L K           E     
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           A++ G +  VFV  +LV++YA F  +++A  +F+ M  RD+V WN ++  +   G  +E 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR----AHTYVWKVGLSD---NVNV 281
           L LF      G+ PD    VS+ +    +G   +  R       Y  K+ + D   +V V
Sbjct: 208 LGLFSAFHRSGLRPD---CVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTV 264

Query: 282 NNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            N  L  Y + G    A   FR+M + R      T +V L+V       LEL K++    
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA-SLNHLELGKQIHGAV 323

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE--HFGCMVDLLGRAGLVK 398
              G   FV V  +  +  +     +Y +RM   +G M +++   +  ++    R+GL +
Sbjct: 324 VRFGWDQFVSVANSAINMYVKAGSVNYARRM---FGQMKEVDLISWNTVISGCARSGLEE 380

Query: 399 QAYEYIQNML---MPPNAVIWRTLLGACT 424
            +     ++L   + P+     ++L AC+
Sbjct: 381 CSLRLFIDLLRSGLLPDQFTITSVLRACS 409


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/581 (41%), Positives = 346/581 (59%), Gaps = 35/581 (6%)

Query: 70  GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESANPLLA 127
           G+P  N      +I A+      +  A  IF+ V+  + ++ +W+ M+  Y ++     A
Sbjct: 196 GMPERNTIASNSMI-ALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEA 254

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           + L+ +M  SG+  D       L A S++ +V MG   H +A++ G E  V ++N+L+H+
Sbjct: 255 LVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHL 314

Query: 188 YAAFGHVKDACKVFE--------------------------------LMSERDLVAWNSV 215
           Y++ G + DA ++F+                                 M E+D+V+W+++
Sbjct: 315 YSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAM 374

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A +   +EAL LF+EM   GV PD   +VS  SAC  L  L LG+  H Y+ +  L
Sbjct: 375 ISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKL 434

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV ++  L+D Y KCG +  A  VF  M ++   +W+ +++GLA+NG  +++L +F +
Sbjct: 435 QVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFAD 494

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G VP E+TF+GVL AC H G+V++G  YF  M  E+ I   I+H+GCMVDLLGRAG
Sbjct: 495 MKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAG 554

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+K+A E I +M M P+   W  LLGAC  H  + + E     L+QL+P H G +VLLSN
Sbjct: 555 LLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSN 614

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA +  W NV E+R  M +  V KTPG S++E    V EF  GD++HPQ  +I  ML  
Sbjct: 615 IYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDV 674

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  KLK+EGYVP T  V  DI+EEEKE AL  HSEK+A+AF L+  +P TP+RV KNLR+
Sbjct: 675 VAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRI 734

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  +KLISK + R+IVVRDR RFHHFK G CSC D+W
Sbjct: 735 CNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 209/463 (45%), Gaps = 108/463 (23%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSF-PMSYAHNIFSHVQ 104
           +LLQ C   +H  KQ+ + +I  G+ + +P     LI ++  S +  P  Y+  IF+H++
Sbjct: 8   SLLQSCKCPRH-FKQLLSQTILTGL-ITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLR 65

Query: 105 DPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +PN FTWNT++R +    N P  A+  Y     S  KPD++TYP LL+  +       G 
Sbjct: 66  NPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGR 125

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFG------------------------------- 192
           Q H+ A+ +GF+  V+V+N+L+++YA  G                               
Sbjct: 126 QLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAG 185

Query: 193 HVKDACKVFELM---------------------------------SERDLVAWNSVINGF 219
            V++A +VFE M                                  ERD+V+W+++++ +
Sbjct: 186 EVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCY 245

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             N    EAL LF EM   GV  D   +VS  SAC+ +  + +GR  H    KVG+ D V
Sbjct: 246 EQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYV 305

Query: 280 NVNNALLDFYSKCGIIIAAQRVFRE--------------------------------MRK 307
           ++ NAL+  YS CG I+ A+R+F +                                M +
Sbjct: 306 SLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPE 365

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG--- 364
           ++ VSWS ++ G A +    EAL LF+EM++ G  P E   V  + AC+H   +D G   
Sbjct: 366 KDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWI 425

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            +Y  R K +  ++        ++D+  + G V+ A E    M
Sbjct: 426 HAYISRNKLQVNVILSTT----LIDMYMKCGCVENALEVFYAM 464


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/619 (40%), Positives = 357/619 (57%), Gaps = 47/619 (7%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E+ + SV+  C  + QV        KQVHA   R G+      L K L+  +  L  PM 
Sbjct: 39  ESRLVSVLHGCTHINQV--------KQVHAHIFRKGLEQCCFVLAK-LLRTLTKLDVPMD 89

Query: 95  -YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            Y   +F  V+ PN F W  +IRGYA     + +V LY+ M   GI P + T+  LLKA 
Sbjct: 90  PYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKAC 149

Query: 154 SKLADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMY------------------------ 188
           S   DV +G Q H+  I   GF S ++V N+L+ MY                        
Sbjct: 150 SAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISW 209

Query: 189 -------AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
                  A  G+++ A ++F+ +  +D+VAW +++ G+A N +P EAL +F  M + GV+
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSKCGIIIAAQ 299
            D  T+V + SACA+LGA            + G   + NV V +AL+D Y+KCG +  A 
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF  M +RN  S+S+++VG A++G    A+ELF EM      P  VTF+GVL ACSH G
Sbjct: 330 KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           MV++G   F  M++ +G+ P  +H+ CMVDLLGRAG +++A   ++ M M P+  +W  L
Sbjct: 390 MVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGAL 449

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IHG+  +A+IA S L +LEP   G+Y+LLSN+YA   RW +V +VR+ M  + +K
Sbjct: 450 LGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLK 509

Query: 480 KTPGHSLVELGNR--VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           K PG S VE G +  + EFF GD SHP++ EI   L ++  +LK  GY P   +V  DI 
Sbjct: 510 KNPGCSWVE-GKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDIS 568

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           +EEK+  L  HSEK+A+AF L+ T  G  +R+VKNLR+C DCH  +   S++  REIVVR
Sbjct: 569 DEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVR 628

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHF+DG CSC ++W
Sbjct: 629 DNMRFHHFRDGRCSCGNFW 647


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/578 (40%), Positives = 340/578 (58%), Gaps = 33/578 (5%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           +P+ +      +I  +  L   +  A  +  H    N+ +W  +I GY+ +     AV+ 
Sbjct: 166 IPVKDAVAWTTVISGLAKLGL-LDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDC 224

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG----------------- 173
           ++ M   GI+PD  T   LL A ++L D+  G   H +    G                 
Sbjct: 225 FNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAK 284

Query: 174 ----------FESLVFVQ-----NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
                     F++L   +     N+++  Y   GHV  A  +F+ M +RDLV +NS+I G
Sbjct: 285 CGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITG 344

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +   G+  EAL LF +M    +  D +TMVSL +ACA LGAL  GR  H  + +  +  +
Sbjct: 345 YIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVD 404

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + +  ALLD Y KCG +  A  VF+ M  R+  +WS ++ GLA NG GK ALE F  M++
Sbjct: 405 IYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKV 464

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            GF P  VT++ +L ACSH  ++DEG  YF+ M+  + I P IEH+GCM+DLLGR+GL+ 
Sbjct: 465 DGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLD 524

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A + ++ M M PNAVIW ++L AC +H  + +A  A   LL+LEP     YV L N+Y 
Sbjct: 525 EAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYI 584

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             ++W +  ++RR M +  VKK  G+S + +  +V +F + DR+HPQ  EI AM+ EIT+
Sbjct: 585 DSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITR 644

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           +LK  GY P T  +  D++EEEKE AL  HSEKIAIAF L++ AP  P+ ++KNLRVC D
Sbjct: 645 RLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCED 704

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH AIKLIS++++REI+VRDRSRFHHF+DG CSC D+W
Sbjct: 705 CHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 46/358 (12%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-----MSYAHNIFSHVQDPNIF 109
           S  +  ++HA  +  G  L+ P    +L+ ++V+   P     + YA  +F  +   + F
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPS-ASHLLNSLVNCFTPTDPLHLRYALCLFDRMP-CSTF 68

Query: 110 TWNTMIRG-YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHS 167
            ++T +R  +  S+ P   + LY +M  +G+  D  T+ FL K  ++  A V + +  H+
Sbjct: 69  LFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHA 128

Query: 168 VAIRNGFESLV-FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS----- 221
              R    S V  V N ++HMY   G   DA + F+ +  +D VAW +VI+G A      
Sbjct: 129 ACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLD 188

Query: 222 --------------------------NGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
                                      G+  EA+  F  M S+G+EPD  T++ L SACA
Sbjct: 189 DAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACA 248

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWS 314
           +L  L  GR  H  V + G+  +  +  AL+D Y+KCG I  A  VF  + R R   SW+
Sbjct: 249 QLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWN 308

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
            ++ G    G    A  LF +ME        VTF  ++    H G + E    F +M+
Sbjct: 309 AMIDGYCKLGHVDVARYLFDQMEDRDL----VTFNSLITGYIHGGRLREALLLFMQMR 362



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 45/327 (13%)

Query: 159 VRMGEQTHSVAIRNGF----ESLVFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAW 212
           VR   + H+V + +G      S   + NSLV+ +      H++ A  +F+ M     +  
Sbjct: 12  VRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFD 71

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVW 271
            ++   F ++  P   L L+R M   GV  D +T   LF  CA   A + L +  H   +
Sbjct: 72  TALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACF 131

Query: 272 KVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA--------- 321
           +  L   V  V+N ++  Y + G+   A+R F ++  ++AV+W+T++ GLA         
Sbjct: 132 RTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAW 191

Query: 322 -----------------VNGFGK-----EALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
                            ++G+ +     EA++ F  M   G  P EVT +G+L AC+   
Sbjct: 192 CLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLK 251

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            +  G S  K +  E G++   +    ++D+  + G + +A+E    +        W  +
Sbjct: 252 DLVFGRSLHK-LVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAM 310

Query: 420 L-GACTIHGHSAIAEIARSTLLQLEPK 445
           + G C + GH    ++AR    Q+E +
Sbjct: 311 IDGYCKL-GH---VDVARYLFDQMEDR 333


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/482 (45%), Positives = 327/482 (67%), Gaps = 1/482 (0%)

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
           +  ++PD  T   L+ A ++L ++  G+  HS +   G +  + V N+++ MY     ++
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
            A +VF  + E+D+++W S+++G A +G   E+L LFR+M    +EPD  T+V + SACA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           + GAL  G+  H  + K  ++ ++ +  AL+D Y+KCG I  A +VFR MR RN  +W+ 
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ GLA++G G++A+ LF +ME    +P +VTF+ +L ACSH G+VDEG + F+ MK+++
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
            I P++EH+GC+VDLL RA  V  A  +I+NM +  N+V+W TLLGAC   GH  +AE  
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
              +++LEP   G YV+LSNLYA   +W +  ++R+ M  + ++KTPG S +EL   + +
Sbjct: 304 XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 363

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           F  GDRSH QTE+I+AM+ E+T+++ L+ G+VP T NV  DIEEEEKE +L  HSEK+AI
Sbjct: 364 FVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAI 423

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           A  L++T  G+P+R+VKNLRVC DCH  +K+ SKVY+REIV RDRSRFHHFK+G CSC D
Sbjct: 424 ALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMD 483

Query: 615 YW 616
           +W
Sbjct: 484 FW 485



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 12/224 (5%)

Query: 46  ITLLQVCAS--SKHKLKQVHAFSIRHGV----PLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           ++L+  CA   +  + K +H++S   G+     +NN  L  Y           +  A  +
Sbjct: 15  VSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMY------CKCDDIESAQEV 68

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F+ +++ ++ +W +M+ G A+S     ++ L+ KM +  I+PD  T   +L A ++   +
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGAL 128

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H +  +      + ++ +LV MYA  G +  A +VF  M  R++  WN++I G 
Sbjct: 129 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGL 188

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           A +G   +A++LF +M  + + PD  T ++L  AC+  G +  G
Sbjct: 189 AMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEG 232


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/616 (40%), Positives = 363/616 (58%), Gaps = 49/616 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHV 103
           ++L Q C S+  +++Q+HAFS++  +  N+P +   L+  Y+   ++  + YA +IF  +
Sbjct: 20  LSLFQTC-SAPQEVEQLHAFSLKTAI-FNHPFVSSRLLALYSDPKIN-DLGYARSIFDRI 76

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           Q  ++  WNT+I+ Y E+      + L+ ++ V    PD  T P ++K  ++L  V+ G+
Sbjct: 77  QRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGK 135

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD-----------LVAW 212
           Q H +A++ GF S VFVQ SLV+MY+  G +  A KVF+ M ++D           LV+W
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSW 195

Query: 213 NSVINGFASNGKPNEALTLFREMA-------------------------------SEGVE 241
           N++ING+  +G  + AL LF +M                                  G  
Sbjct: 196 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 255

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P   T+VS+ SA + L  L  GR  H+Y+ K G   +  +  +L++ Y+KCG I +A  V
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 315

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           FR ++K+    W+ ++VGL ++G    AL LF EM   G  P  + F+GVL AC+H G+V
Sbjct: 316 FRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLV 375

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           D+G  YF  M +EY I P +EH+GC+VD+L RAG +++A   I+NM + PN VIW +LLG
Sbjct: 376 DDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLG 435

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
               HG   I E A   ++++ P+  G Y+LLSN+YA    W  V  VR  M K   +K 
Sbjct: 436 GSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKD 495

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE-EEE 540
           PG S VE    + EF +GD SHPQT+EI+A ++E+ +KLK  G+VP T  V   IE E+E
Sbjct: 496 PGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKE 555

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L  HSE++AIAF L+N  PG P+R++KNLRVC DCH   KL+SK+YSREI+VRD  
Sbjct: 556 KEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNC 615

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFK+G CSC DYW
Sbjct: 616 RFHHFKNGSCSCMDYW 631


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/517 (43%), Positives = 324/517 (62%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F+ + + ++  WN +I GY++    + A+ L+ +MH  GI  +  T   +LK+ + L  V
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +  Q H +++++GF S ++V NSL+  Y    HV+DA ++FE  +  DLV++ S+I  +
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G+  EAL LF EM    ++PD +   SL +ACA L A   G++ H ++ K G   ++
Sbjct: 537 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 596

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
              N+L++ Y+KCG I  A R F E+ +R  VSWS ++ GLA +G G++AL+LF +M   
Sbjct: 597 FAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 656

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +T V VL AC+H G+V E   YF+ M++ +G  P  EH+ CM+DLLGRAG + +
Sbjct: 657 GVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINE 716

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E +  M    NA +W  LLGA  IH    +   A   L  LEP+ SG +VLL+N+YA 
Sbjct: 717 AVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYAS 776

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W NV EVRR M   +VKK PG S +E+ ++V+ F +GDRSH +++EI+A L E++  
Sbjct: 777 AGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDL 836

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GYVP  E    D+E+ EKE  L +HSEK+A+AF L+ T  G P+RV KNLRVC DC
Sbjct: 837 MDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDC 896

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K I K+ SREI+VRD +RFHHFKDG CSC DYW
Sbjct: 897 HTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 223/440 (50%), Gaps = 28/440 (6%)

Query: 1   MTSWLMHSKQPSYEEISDLPCR-VKSLYHSTPASQENPITSVVRKCIT------------ 47
           M  W  HS Q    +   LP +    L  + P   ++P T+ +   I             
Sbjct: 1   MKLWRHHSFQKPLHQRLHLPFKPAPKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYS 60

Query: 48  -LLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            LL  C ++K  L+   Q+HA   + G+  ++P +  +LI  + S      YA  +    
Sbjct: 61  KLLSQCCTTK-SLRPGLQIHAHITKSGLS-DDPSIRNHLI-NLYSKCRNFGYARKLVDES 117

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            +P++ +W+ +I GYA++     A+  + +MH+ G+K +  T+  +LKA S + D+R+G+
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H V + +GFE  VFV N+LV MYA      D+ ++F+ + ER++V+WN++ + +    
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA+ LF EM   G++P+ +++ S+ +AC  L   + G+  H Y+ K+G   +    N
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+K G +  A  VF ++++ + VSW+ ++ G  ++   ++ALEL  +M+  G  P
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICP 357

Query: 344 GEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
              T    L AC+  G+ + G    S   +M  E  +   +     +VD+  +  L++ A
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG----LVDMYSKCDLLEDA 413

Query: 401 YEYIQNMLMPPNAVIWRTLL 420
                N+L   + + W  ++
Sbjct: 414 RMAF-NLLPEKDLIAWNAII 432



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 171/359 (47%), Gaps = 33/359 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + N+ +WN +   Y +      AV L+ +M +SGIKP+  +   ++ A + L D
Sbjct: 214 LFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
              G+  H   I+ G++   F  N+LV MYA  G + DA  VFE + + D+V+WN+VI G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
              +    +AL L  +M   G+ P+ +T+ S   ACA +G   LGR+ H+ + K+ +  +
Sbjct: 334 CVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESD 393

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V+  L+D YSKC ++  A+  F  + +++ ++W+ ++ G +      EAL LF EM  
Sbjct: 394 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 453

Query: 339 GGFVPGEVTFVGVLYACS-----------HCGMVDEGFS----YFKRMKDEYGIMPKIEH 383
            G    + T   +L + +           H   V  GF         + D YG    +E 
Sbjct: 454 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVED 513

Query: 384 ---------------FGCMVDLLGRAGLVKQAYEY---IQNMLMPPNAVIWRTLLGACT 424
                          F  M+    + G  ++A +    +Q+M + P+  +  +LL AC 
Sbjct: 514 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACA 572


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/584 (42%), Positives = 349/584 (59%), Gaps = 68/584 (11%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           S  +P   ++ KC TL          LKQVHA  I  G+  +   L + L+   +S +  
Sbjct: 7   SSNHPTLQLLEKCKTL--------DTLKQVHAHMITTGLIFHTYPLSRILL---ISSTIV 55

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
            ++A +IF+H+ +P IF +NT+I   A                   IKP TH       A
Sbjct: 56  FTHALSIFNHIPNPTIFLYNTLISSLA------------------NIKPHTHI------A 91

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S  + V     TH+    NGF                F  +  AC     +   D+   
Sbjct: 92  FSLYSRV----LTHTTLKPNGF---------------TFPSLFKACGSQPWL-RHDIFLI 131

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            SV             LTLF EM    ++ +  T+V+L SACAELGAL+ G  AH YV K
Sbjct: 132 KSV-------------LTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLK 178

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  N  V  AL+D YSKCG +  A ++F ++  R+ + ++ ++ G A++G+G +AL+L
Sbjct: 179 HNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDL 238

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FK+M + G  P +VT V  + +CSH G+V+EG   F+ MK+ YG+ PK+EH+GC+VDLLG
Sbjct: 239 FKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLG 298

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +++A E + NM M PNAVIWR+LLGA  +HG+  I E+    L+QLEP+ SG+YVL
Sbjct: 299 RAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVL 358

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA   RW +V+ VR+ M    + K PG SLVE+G  + EF MGD++HP+++EI+  
Sbjct: 359 LSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLK 418

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E++++L   G+ PRT  V  DIEEEEKEDALSYHSE++AIAF L+ +    P+R++KN
Sbjct: 419 LEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKN 478

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH + KLISK+Y REI+VRDR+RFHHFK+G CSC DYW
Sbjct: 479 LRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/517 (43%), Positives = 324/517 (62%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F+ + + ++  WN +I GY++    + A+ L+ +MH  GI  +  T   +LK+ + L  V
Sbjct: 390 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 449

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +  Q H +++++GF S ++V NSL+  Y    HV+DA ++FE  +  DLV++ S+I  +
Sbjct: 450 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 509

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G+  EAL LF EM    ++PD +   SL +ACA L A   G++ H ++ K G   ++
Sbjct: 510 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 569

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
              N+L++ Y+KCG I  A R F E+ +R  VSWS ++ GLA +G G++AL+LF +M   
Sbjct: 570 FAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 629

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +T V VL AC+H G+V E   YF+ M++ +G  P  EH+ CM+DLLGRAG + +
Sbjct: 630 GVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINE 689

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E +  M    NA +W  LLGA  IH    +   A   L  LEP+ SG +VLL+N+YA 
Sbjct: 690 AVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYAS 749

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W NV EVRR M   +VKK PG S +E+ ++V+ F +GDRSH +++EI+A L E++  
Sbjct: 750 AGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDL 809

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GYVP  E    D+E+ EKE  L +HSEK+A+AF L+ T  G P+RV KNLRVC DC
Sbjct: 810 MDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDC 869

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K I K+ SREI+VRD +RFHHFKDG CSC DYW
Sbjct: 870 HTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 189/354 (53%), Gaps = 20/354 (5%)

Query: 1   MTSWLMHSKQPSYEEISDLPCR-VKSLYHSTPASQENPITSVVRKCIT------------ 47
           M  W  HS Q    +   LP +    L  + P   E+P T+ +   I             
Sbjct: 1   MKLWRHHSFQKPLHQRLHLPFKPAPKLIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYS 60

Query: 48  -LLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            LL  C ++K  L+   Q+HA   + G+  ++P +  +LI  + S      YA  +    
Sbjct: 61  KLLSQCCTTK-SLRPGLQIHAHITKSGLS-DDPSIRNHLI-NLYSKCRXFGYARKLVDES 117

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            +P++ +W+ +I GYA++     A+  + +MH+ G+K +  T+  +LKA S + D+R+G+
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H V + +GFE  VFV N+LV MYA      D+ ++F+ + ER++V+WN++ + +    
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXD 237

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA+ LF EM   G++P+ +++ S+ +AC  L   + G+  H Y+ K+G   +    N
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSAN 297

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           AL+D Y+K G +  A  VF ++++ + VSW+ ++ G  ++   ++ALEL  +M+
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 14/294 (4%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P + +Y  LL        +R G Q H+   ++G      ++N L+++Y+       A K+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
            +  SE DLV+W+++I+G+A NG    AL  F EM   GV+ + +T  S+  AC+ +  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            +G++ H  V   G   +V V N L+  Y+KC   + ++R+F E+ +RN VSW+ L    
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
               F  EA+ LF EM + G  P E +   ++ AC+  G+ D       R K  +G + K
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDS-----SRGKIIHGYLIK 286

Query: 381 IEH------FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + +         +VD+  + G +  A    +  +  P+ V W  ++  C +H H
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEK-IKQPDIVSWNAVIAGCVLHEH 339


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 353/577 (61%), Gaps = 4/577 (0%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF--PMSYAHNIF 100
           ++C+ LL+ C +   + KQVHA  I+  +  ++      ++       +   M+YA +IF
Sbjct: 31  QECLYLLKRCHNID-EFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIF 89

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             + DP  F +NTMIRGY    +   A+  Y++M   G +PD  TYP LLKA ++L  +R
Sbjct: 90  RGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIR 149

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G+Q H    + G E+ VFVQNSL++MY   G ++ +  VFE +  +   +W+S+++  A
Sbjct: 150 EGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209

Query: 221 SNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             G  +E L LFR M SE  ++ +   MVS   ACA  GAL LG   H ++ +     N+
Sbjct: 210 GMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNI 269

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  +L+D Y KCG +  A  +F++M KRN +++S ++ GLA++G G+ AL +F +M   
Sbjct: 270 IVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKE 329

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  V +V VL ACSH G+V EG   F  M  E  + P  EH+GC+VDLLGRAGL+++
Sbjct: 330 GLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEE 389

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E IQ++ +  N VIWRT L  C +  +  + +IA   LL+L   + GDY+L+SNLY+ 
Sbjct: 390 ALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQ 449

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            Q W +V   R  +  + +K+TPG S+VEL  +   F   DRSHP+ +EI+ ML ++  +
Sbjct: 450 GQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQ 509

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           LK EGY P    +  +++EEEK++ L  HS+K+AIAF L+ T PG+ +++ +NLR+C+DC
Sbjct: 510 LKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDC 569

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H   K IS +Y REIVVRDR+RFH FK G CSC+DYW
Sbjct: 570 HTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 350/559 (62%), Gaps = 2/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           LK++H +S++     NN  +    + +       +SYAH +F  ++   + +WN +I GY
Sbjct: 411 LKELHCYSLKQEFVHNNELVANAFVASYAKCG-SLSYAHRVFCSIRSKTVNSWNALIGGY 469

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++S++P L+++ Y +M  SG+ PD  T   LL A S++  +++G++ H + IRN  E   
Sbjct: 470 SQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDS 529

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  SL+ +Y   G +  A  +F+ M ++ LV+WN+++NG+  NG P  AL+LFR+M   
Sbjct: 530 FVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLY 589

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+P   +M+S+F AC+ L +L LGR AH Y  K  L DN  +  +++D Y+K G ++ +
Sbjct: 590 GVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMES 649

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  +++R+  SW+ +V+G  ++G  KEA++LF+EM+  G  P E+TF+GVL AC+H 
Sbjct: 650 FKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHS 709

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY-IQNMLMPPNAVIWR 417
           G+V EG +Y  +MK  +G+ P ++H+ C++D+L RAG + +A +   + M   P   IW 
Sbjct: 710 GLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWN 769

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LL +C IH +  + E   + L   EP+   +YVLLSNLYA   +W  V++VR+ M +  
Sbjct: 770 FLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMS 829

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           ++K  G S +EL  +VF F  G+ S    EEI ++ + + +++   GY P T +V  D+ 
Sbjct: 830 LRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLS 889

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEK + L  HSEK+AI + L+ T+ GT +RV KNLR+C DCH A KLISKV  REIVVR
Sbjct: 890 EEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVR 949

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHFK+G CSC DYW
Sbjct: 950 DNKRFHHFKNGFCSCGDYW 968



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 160/303 (52%), Gaps = 8/303 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +++H   +     L+N D+    +  + S+      + ++F  ++  N+F WN +I  Y+
Sbjct: 101 RKIHQL-VSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 120 ESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +      +E++ KM   SG+ PD  T+P ++KA + +++V++G   H + ++      V
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDV 219

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV N+LV  Y   G V DA +VF++M ER+LV+WNS+I  F+ NG   E   L  +M  +
Sbjct: 220 FVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEK 279

Query: 239 GVE----PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
             E    PD  T+ ++   CA    + +G+  H    K+ L   V VNNAL+D YSKCG 
Sbjct: 280 DDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGC 339

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG--FVPGEVTFVGVL 352
           I  AQ +F+    +N VSW+T+V G +  G   +  +L ++M  GG      EVT +  +
Sbjct: 340 INDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAV 399

Query: 353 YAC 355
             C
Sbjct: 400 PVC 402


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/624 (40%), Positives = 373/624 (59%), Gaps = 46/624 (7%)

Query: 31  PASQENP--ITSVVRK-CITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           P S  NP  + S+ +K  I+LLQ    S+H  ++  +HA  IR+G    +P    ++++ 
Sbjct: 35  PNSNSNPKSLKSLDQKQIISLLQ---RSRHINQVLPIHAQLIRNGHS-QDP----FMVFE 86

Query: 86  IV---SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           ++   S    + YA  IF +  +PN++ +  +I G+  S N L A++LYS+M    I PD
Sbjct: 87  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPD 146

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +    +LKA      +R G + HS A++ GF S   V+  ++ +Y   G + DA +VFE
Sbjct: 147 NYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFE 206

Query: 203 LMSE------------------------------RDLVAWNSVINGFASNGKPNEALTLF 232
            M E                              +D V W ++I+GF  N + N AL  F
Sbjct: 207 EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAF 266

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           R M  E V P+ +T+V + SAC++LGAL +GR  H+Y+ K  +  N+ V NAL++ YS+C
Sbjct: 267 RGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRC 326

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  AQ VF EM+ R+ ++++T++ GL++NG  ++A+ELF+ M      P  VTFVGVL
Sbjct: 327 GSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVL 386

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+VD GF  F  M  +Y + P+IEH+GCMVDLLGR G +++AY+ I+ M M P+
Sbjct: 387 NACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPD 446

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            ++  TLL AC +H +  + E     L       SG YVLLS++YA   +W    +VR  
Sbjct: 447 HIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAK 506

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M +  ++K PG S +E+ N + EF +GD  HPQ E I+  L E+ + L+LEGY P  E V
Sbjct: 507 MKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVV 566

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             DIE+ EKE AL+ HSE++AI + L++T P T +RV+KNLRVC DCH AIKLI+K+  R
Sbjct: 567 LQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRR 626

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           +IVVRDR+RFH+F++G CSC DYW
Sbjct: 627 KIVVRDRNRFHYFENGACSCGDYW 650


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/574 (40%), Positives = 356/574 (62%), Gaps = 5/574 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + LLQ C S K +L+++HA  I  G+  + P   K L +  +S+S  ++YA  +F  ++ 
Sbjct: 8   LALLQGCNSLK-RLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMEC 66

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQ 164
           P    WN++IRG+A+S++P+ A+  Y++M       PDT T+ F+LKA  ++   R  ++
Sbjct: 67  PQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKE 126

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   IR G+++ V V  +LV  Y+A G V  A +VF+ M  RDLVAWN++I+ F+  G 
Sbjct: 127 VHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGL 186

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  + +M SE V+ DG+T+V L S+CA LGAL +G + H +  + GL  ++ V NA
Sbjct: 187 HQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNA 246

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG +  A  +F  M++++  +W++++VG  V+G G EA+  F++M      P 
Sbjct: 247 LIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPN 306

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            VTF+G+L  CSH G+V EG  YF  M  ++ + P+++H+GC+VDL GRAG + +A E +
Sbjct: 307 PVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIV 366

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
            N     ++V+WR LLG+C IH +  I EIA + L +L    +GD +LL+ +YA E+   
Sbjct: 367 SNS-SHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKA 425

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V  +R+ +  +  K TPG S +E+G +V +F + D+SH  + E++  L E+  +    G
Sbjct: 426 GVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFG 485

Query: 525 YVPRTENVFADI--EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           YV        D+    E  + + +YHSEK+AIAF L  TA GT +R+VKNLRVC DCH  
Sbjct: 486 YVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSF 545

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK +S  ++REI+VRDR RFHHFK G CSC DYW
Sbjct: 546 IKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/524 (42%), Positives = 332/524 (63%), Gaps = 5/524 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++ P++  +N +I GY+ +     +V L++++   G+ P++ T   L+   S 
Sbjct: 266 ARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSP 325

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                + +  H   +++GF +   V  ++  ++     ++ A K F+ M E+ + +WN++
Sbjct: 326 FGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAM 385

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A NG    A+ LF +M    V P+  T+ S  SACA+LGAL+LG+  H  + +  L
Sbjct: 386 ISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDL 445

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV V  AL+D Y+KCG I  A+R+F  M  +N VSW+ ++ G  ++G G EAL+L+K+
Sbjct: 446 EPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKD 505

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M     +P   TF+ VLYACSH G+V+EG+  F+ M D+Y I P IEH  CMVDLLGRAG
Sbjct: 506 MLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAG 565

Query: 396 LVKQAYEYIQNMLMPPNAV---IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
            +K+A+E I     P +AV   +W  LLGAC +H  S +A++A   L +L+P++SG YVL
Sbjct: 566 QLKEAFELISE--FPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVL 623

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNL+  ++++     VR+     ++ KTPG++L+E+GN+   F  GDR+HPQ+E I++ 
Sbjct: 624 LSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSY 683

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++T K+   GY P TE    D+EEEEKE  +  HSEK+AIAF L++T PGT +R++KN
Sbjct: 684 LEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKN 743

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH A K ISKV  R IVVRD SRFHHF+DG CSC DYW
Sbjct: 744 LRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 181/356 (50%), Gaps = 10/356 (2%)

Query: 81  YLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           ++  A+  L F +S   +A  +F  V  P+   WNT++ G + S     AVE +++M   
Sbjct: 150 FVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSE----AVESFARMVCD 205

Query: 138 G-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           G ++PD  T   +L A +++ADV MG   HS A + G      V   L+ +Y+  G V+ 
Sbjct: 206 GSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVES 265

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A  +F++M + DLVA+N++I+G++ NG    ++ LF E+ + G+ P+  T+V+L    + 
Sbjct: 266 ARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSP 325

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
            G   L +  H +V K G + N  V+ A+   + +   + +A++ F  M ++   SW+ +
Sbjct: 326 FGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAM 385

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + G A NG  + A+ LF++M      P  +T    L AC+  G +  G  +  R+  E  
Sbjct: 386 ISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEED 444

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           + P +     ++D+  + G + +A   I N +   N V W  ++    +HG  A A
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEA-RRIFNTMDNKNVVSWNAMIAGYGLHGQGAEA 499


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 334/557 (59%), Gaps = 2/557 (0%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
            KQ+H      G+ L+  +LG  LI   +     +  A N+F  +Q  ++ +W  MI G A
Sbjct: 552  KQIHGRITESGLQLD-VNLGNALINMYIRCG-SLQDARNVFHSLQHRDVMSWTAMIGGCA 609

Query: 120  ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +    + A+EL+ +M   G +P   T+  +LK  +  A +  G++  +  + +G+E    
Sbjct: 610  DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG 669

Query: 180  VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            V N+L+  Y+  G + DA +VF+ M  RD+V+WN +I G+A NG    A+    +M  + 
Sbjct: 670  VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729

Query: 240  VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            V P+ ++ VSL +AC+   AL  G+R H  + K  L  +V V  AL+  Y+KCG    AQ
Sbjct: 730  VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789

Query: 300  RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
             VF  + ++N V+W+ ++   A +G   +AL  F  ME  G  P   TF  +L AC+H G
Sbjct: 790  EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849

Query: 360  MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            +V EG+  F  M+ EYG++P IEH+GC+V LLGRA   ++A   I  M  PP+A +W TL
Sbjct: 850  LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 420  LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
            LGAC IHG+ A+AE A +  L+L  ++   Y+LLSN+YA   RW +V ++RR M    ++
Sbjct: 910  LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 969

Query: 480  KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
            K PG S +E+ N + EF   DRSHP+T EI+A L  ++ +++  GY P T++V  D+ + 
Sbjct: 970  KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 1029

Query: 540  EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
             +E +L  HSE++AIA+ L+ T PGTP+R+ KNLR+C DCH A K ISK+  REI+ RD 
Sbjct: 1030 HQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 1089

Query: 600  SRFHHFKDGHCSCRDYW 616
            +RFH FK+G CSC DYW
Sbjct: 1090 NRFHSFKNGKCSCEDYW 1106



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 227/473 (47%), Gaps = 46/473 (9%)

Query: 46  ITLLQVCASSKH----KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +++L  C++SK     KL   H     H    ++  +G  LI ++ +    +  A  +F 
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHS---SDVQIGNALI-SMYARCGDLPKARELFY 389

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++ +WN +I GYA   +   A+ LY +M   G+KP   T+  LL A +  +    
Sbjct: 390 TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  H   +R+G +S   + N+L++MY   G + +A  VFE    RD+++WNS+I G A 
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G    A  LF+EM +E +EPD  T  S+ S C    AL LG++ H  + + GL  +VN+
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL 569

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL++ Y +CG +  A+ VF  ++ R+ +SW+ ++ G A  G   +A+ELF +M+  GF
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 342 VPGEVTFVGVLYACSHCGMVDEG-------------------------FSYFKRMKDEYG 376
            P + TF  +L  C+    +DEG                         +S    M D   
Sbjct: 630 RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDARE 689

Query: 377 IMPK-----IEHFGCMVDLLGRAGLVKQAYEY---IQNMLMPPNAVIWRTLLGACTIHGH 428
           +  K     I  +  ++    + GL + A E+   +Q   + PN   + +LL AC+    
Sbjct: 690 VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACS--SF 747

Query: 429 SAIAEIARSTLLQLEPKHSGDY---VLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           SA+ E  R     ++ K  GD      L ++YA        QEV   ++++ V
Sbjct: 748 SALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNV 800



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 195/393 (49%), Gaps = 18/393 (4%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           LL  CA+S      K +H   +R G+  N      +L  A++++      +  A N+F  
Sbjct: 437 LLSACANSSAYADGKMIHEDILRSGIKSNG-----HLANALMNMYRRCGSLMEAQNVFEG 491

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            Q  ++ +WN+MI G+A+  +   A +L+ +M    ++PD  T+  +L        + +G
Sbjct: 492 TQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG 551

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +Q H     +G +  V + N+L++MY   G ++DA  VF  +  RD+++W ++I G A  
Sbjct: 552 KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQ 611

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+  +A+ LF +M +EG  P   T  S+   C     L  G++   Y+   G   +  V 
Sbjct: 612 GEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG 671

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  YSK G +  A+ VF +M  R+ VSW+ ++ G A NG G+ A+E   +M+    V
Sbjct: 672 NALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVV 731

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMVDLLGRAGLVKQ 399
           P + +FV +L ACS    ++EG    KR+  E     +   +     ++ +  + G   +
Sbjct: 732 PNKFSFVSLLNACSSFSALEEG----KRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGE 787

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           A E   N ++  N V W  ++ A   HG ++ A
Sbjct: 788 AQEVFDN-IIEKNVVTWNAMINAYAQHGLASKA 819



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 188/370 (50%), Gaps = 8/370 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K++H  ++  G+   N D+  G  L+   V     +  A   F    D ++  +N +I  
Sbjct: 249 KRIHKLTVEEGL---NSDIRVGTALVTMCVRCG-DVDSAKQAFKGTADRDVVVYNALIAA 304

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            A+  + + A E Y +M   G+  +  TY  +L A S    +  G+  HS    +G  S 
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V + N+L+ MYA  G +  A ++F  M +RDL++WN++I G+A      EA+ L+++M S
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV+P   T + L SACA   A A G+  H  + + G+  N ++ NAL++ Y +CG ++ 
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           AQ VF   + R+ +SW++++ G A +G  + A +LF+EM+     P  +TF  VL  C +
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
              ++ G     R+  E G+   +     ++++  R G ++ A     + L   + + W 
Sbjct: 545 PEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-LQHRDVMSWT 602

Query: 418 TLLGACTIHG 427
            ++G C   G
Sbjct: 603 AMIGGCADQG 612



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 196/388 (50%), Gaps = 14/388 (3%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I++L  C S       K++H+  I+ G    +P +   L+ ++      +  A  +F+ +
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQ-RDPRVQNSLL-SMYGKCGDLPRARQVFAGI 189

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ ++NTM+  YA+ A     + L+ +M   GI PD  TY  LL A +  + +  G+
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H + +  G  S + V  +LV M    G V  A + F+  ++RD+V +N++I   A +G
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA   +  M S+GV  +  T +S+ +AC+   AL  G+  H+++ + G S +V + N
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN 369

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y++CG +  A+ +F  M KR+ +SW+ ++ G A      EA+ L+K+M+  G  P
Sbjct: 370 ALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG----CMVDLLGRAGLVKQ 399
           G VTF+ +L AC++     +G     +M  E  +   I+  G     ++++  R G + +
Sbjct: 430 GRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           A    +      + + W +++     HG
Sbjct: 485 AQNVFEGT-QARDVISWNSMIAGHAQHG 511



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 189/390 (48%), Gaps = 13/390 (3%)

Query: 34  QENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSL 89
           Q  P  +     + LLQ C   +   + K++HA  +   V    PD  L   LI   V  
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWV---GPDIFLSNLLINMYVKC 75

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              +  AH +F  +   ++ +WN++I  YA+      A +L+ +M  +G  P+  TY  +
Sbjct: 76  RSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISI 134

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A    A++  G++ HS  I+ G++    VQNSL+ MY   G +  A +VF  +S RD+
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V++N+++  +A      E L LF +M+SEG+ PD  T ++L  A      L  G+R H  
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             + GL+ ++ V  AL+    +CG + +A++ F+    R+ V ++ L+  LA +G   EA
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEA 314

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
            E +  M   G      T++ +L ACS    ++ G      + ++ G    ++    ++ 
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALIS 373

Query: 390 LLGRAGLVKQAYEYIQNM----LMPPNAVI 415
           +  R G + +A E    M    L+  NA+I
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAII 403


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/574 (40%), Positives = 356/574 (62%), Gaps = 5/574 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + LLQ C S K +L+++HA  I  G+  + P   K L +  +S+S  ++YA  +F  ++ 
Sbjct: 8   LALLQGCNSLK-RLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMEC 66

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQ 164
           P    WN++IRG+A+S++P+ A+  Y++M       PDT T+ F+LKA  ++   R  ++
Sbjct: 67  PQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKE 126

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   IR G+++ V V  +LV  Y+A G V  A +VF+ M  RDLVAWN++I+ F+  G 
Sbjct: 127 VHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGL 186

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  + +M SE V+ DG+T+V L S+CA LGAL +G + H +  + GL  ++ V NA
Sbjct: 187 HQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNA 246

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG +  A  +F  M++++  +W++++VG  V+G G EA+  F++M      P 
Sbjct: 247 LIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPN 306

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            VTF+G+L  CSH G+V EG  YF  M  ++ + P+++H+GC+VDL GRAG + +A E +
Sbjct: 307 PVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIV 366

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
            N     ++V+WR LLG+C IH +  I EIA + L +L    +GD +LL+ +YA E+   
Sbjct: 367 SNS-SHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKA 425

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V  +R+ +  +  K TPG S +E+G +V +F + D+SH  + E++  L E+  +    G
Sbjct: 426 GVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFG 485

Query: 525 YVPRTENVFADI--EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           YV        D+    E  + + +YHSEK+AIAF L  TA GT +R+VKNLRVC DCH  
Sbjct: 486 YVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSF 545

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK +S  ++REI+VRDR RFHHFK G CSC DYW
Sbjct: 546 IKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/583 (39%), Positives = 354/583 (60%), Gaps = 11/583 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           ++SV+  C+ L       +     +H ++++HG+      +   LI     L   ++ AH
Sbjct: 171 LSSVLPMCVVL-----GDRALALVMHVYAVKHGLS-GELFVCNALIDVYGKLGM-LTEAH 223

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F  +   ++ TWN++I    +      AVEL+  M  SG+ PD  T   L  A+++  
Sbjct: 224 WVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG 283

Query: 158 DVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           D    +  H    R G++   +   N++V MYA    +  A KVF+ + +RD+V+WN++I
Sbjct: 284 DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLI 343

Query: 217 NGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            G+  NG  NEA+ ++ +M + EG++P   T VS+  A + LG L  G R H    K GL
Sbjct: 344 TGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGL 403

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + +V V   L+D Y+KCG ++ A  +F  M +R+   W+ ++ GL V+G G +AL LF +
Sbjct: 404 NLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQ 463

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P  VTFV +L ACSH G+VD+G S+F  M+  YGI+P  +H+ CMVD+LGRAG
Sbjct: 464 MQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAG 523

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A+E+IQ+M + P++ +W  LLGAC IHG+  + ++A   L +L+P++ G YVL+SN
Sbjct: 524 QLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSN 583

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS--HPQTEEIHAML 513
           +YA   +W  V  VR  + ++ ++KTPG S +E+   V  F+ G ++  HPQ EEI   L
Sbjct: 584 MYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGL 643

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            ++  K+K  GYVP    V  D+EE+EKE  L+ HSE++AIAF ++NT PGTP+ + KNL
Sbjct: 644 HDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNL 703

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH A K ISK+  REI+VRD +RFHHFKDGHCSC D+W
Sbjct: 704 RVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 165/331 (49%), Gaps = 17/331 (5%)

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISK 155
           N+  H+Q P +   N++I  ++ +A P LA+ L  ++      ++PD+ T+P L++A   
Sbjct: 22  NLDPHLQVPPLLLVNSLIAAFSRAALPRLALPLLRRLLAGAHPLRPDSFTFPPLVRAAPG 81

Query: 156 LADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            A      Q H+ A+R G     VF   SLVH Y  FG V +A +VF+ M ERD+ AWN+
Sbjct: 82  PASA---AQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNA 138

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++G   N +  +A+TL   M  EGV  D  T+ S+   C  LG  AL    H Y  K G
Sbjct: 139 MLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHG 198

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           LS  + V NAL+D Y K G++  A  VF  M  R+ V+W++++      G    A+ELF 
Sbjct: 199 LSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFH 258

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-----YFKRMKDEYGIMPKIEHFGCMVD 389
            M   G  P  +T V +  A + CG  DE  +     Y +R   + G    I     MVD
Sbjct: 259 GMMESGVCPDVLTLVSLASAVAQCG--DELGAKSVHCYVRRRGWDVG---DIIAGNAMVD 313

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +  +   +  A +   N L   + V W TL+
Sbjct: 314 MYAKMSKIDAAQKVFDN-LPDRDVVSWNTLI 343


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 345/561 (61%), Gaps = 13/561 (2%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           VHAF  + G+  +     ++++  ++SL      M  A ++F  ++ P++ T+N +I GY
Sbjct: 243 VHAFGEKCGLAQH-----EHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGY 297

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           + +     +VEL+ ++   G++P + T   L+   S      +    H+  ++ G ++  
Sbjct: 298 SINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANA 357

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V  +L  +Y  F  +  A + F+ M E+ + +WN++I+G+A NG    A+ LF++M + 
Sbjct: 358 PVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQAL 417

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            V P+  T+ S  SACA+LGAL+LG+  H  +    L  NV V  AL+D Y KCG I  A
Sbjct: 418 NVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEA 477

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + +F  M  +N VSW+ ++ G  ++G G EAL+L+K+M      P   TF+ VLYACSH 
Sbjct: 478 RCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHG 537

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV---I 415
           G+V EG + F+ M  +YGI P IEH  CMVDLLGRAG +K+A+E I     P +AV   I
Sbjct: 538 GLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISE--FPKSAVGPGI 595

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC +H    +A++A   L +LEP+++G YVLLSNLY  ++++     VR+    
Sbjct: 596 WGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKS 655

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
            ++ KTPG +L+E+G+R   F  GDR+HPQ++ I+  L ++T K+   GY P TE    D
Sbjct: 656 RKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYD 715

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EEEEKE  +  HSEK+AIAF L+NT PGT +R++KNLRVC DCH A K+ISKV  R IV
Sbjct: 716 VEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIV 775

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD SRFHHF+DG CSC DYW
Sbjct: 776 VRDASRFHHFRDGVCSCGDYW 796



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 209/440 (47%), Gaps = 25/440 (5%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIF 109
           +++   L+ +HA ++  G   +N     ++  A+  L F +S    A  +F  V  P+  
Sbjct: 136 SAASAALRPLHALAVASGFAADN-----FVASALAKLYFTLSRGNDARKVFDAVPSPDTV 190

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
            WNT++ G + S     A+E + +M  +G ++PD+ T   +L A +++A+  MG   H+ 
Sbjct: 191 LWNTLLAGLSGSE----ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAF 246

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
             + G      V   L+ +YA  G ++ A  +F+ M   DLV +N++I+G++ NG    +
Sbjct: 247 GEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSS 306

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LF+E+   G+ P   T+V+L    +  G   L    H +V K GL  N  V+ AL   
Sbjct: 307 VELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTL 366

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y +   + +A+R F  M ++   SW+ ++ G A NG  + A+ LF++M+     P  +T 
Sbjct: 367 YCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTI 426

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
              L AC+  G +  G    K + +E  +   +     ++D+  + G + +A   I + +
Sbjct: 427 SSALSACAQLGALSLGKWVHKIIANEK-LELNVYVMTALIDMYVKCGSIAEA-RCIFDSM 484

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNV 466
              N V W  ++    +HG  A A      ++   L P  S     LS LYA     L V
Sbjct: 485 DNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSS---TFLSVLYACSHGGL-V 540

Query: 467 QE---VRRTMVKERVKKTPG 483
           +E   V R+M  +    TPG
Sbjct: 541 KEGTTVFRSMTSD-YGITPG 559


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/566 (41%), Positives = 355/566 (62%), Gaps = 13/566 (2%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMI 115
           L+Q+HA  +   +PL++       I A  +LS P   ++YA ++F+ +  PNIF+WN++I
Sbjct: 4   LRQLHAHILTRPLPLSSFAFALSKIVAFCALS-PFGNINYARSVFAQIPHPNIFSWNSLI 62

Query: 116 RGYAE----SANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +GY++    S  P+    L+ K+  +G   P++ T  F+LKA + +     G Q HS  +
Sbjct: 63  KGYSQIHTLSKEPIF---LFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVL 119

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           ++GF S +FVQ SLV+ Y     +  A KVFE M  R+LVAW ++I+G A  G  +EA+ 
Sbjct: 120 KDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAME 179

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LFREM   G++PD  T+VS+ SACA  GAL +G   H Y+ K  +  ++ ++ AL+D Y+
Sbjct: 180 LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYA 239

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG I  A++VF  M  ++  +WS++++G A +G  ++A++ F++M      P  VTF+ 
Sbjct: 240 KCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLA 299

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL AC+H G+V  G  ++  M  E+GI P +EH+GC VDLL R+GLV++AY     M +P
Sbjct: 300 VLSACAHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIP 358

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           PNA  WR+LL  C       + EI    LL+LEP ++ +Y+++SNLY+   +W  + E+R
Sbjct: 359 PNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELR 418

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
           + M ++ +K  PG S +E+   V EF MGD+SHP+ + +   + E++ +++  GY P   
Sbjct: 419 KVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSIS 478

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
           +V   + +EEKE ALS HSE+ AIA+ L+ T     +RVVKNLRVC DCH  IK+ISK+Y
Sbjct: 479 DVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLY 538

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            REI+VRDR RFH F  G CSC+D+W
Sbjct: 539 EREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/521 (42%), Positives = 327/521 (62%), Gaps = 5/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ +W TMI  Y+ +     A+ L + M   G+ P+  T+  +L+A  +
Sbjct: 339 AQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACER 398

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D++   Q HS  ++ G ES VFV+++L+ +Y+  G + +A KVF  M   D V WNS+
Sbjct: 399 LYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSI 455

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  FA +   +EAL L++ M   G   D  T+ S+  AC  L  L LGR+AH +V K   
Sbjct: 456 IAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--F 513

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +NNALLD Y KCG +  A+ +F  M K++ +SWST++ GLA NGF  EAL LF+ 
Sbjct: 514 DQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFES 573

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ G  P  +T +GVL+ACSH G+V+EG+ YF+ M + YGI P  EH+GCM+DLLGRA 
Sbjct: 574 MKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAE 633

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +    + I  M   P+ V WRTLL AC    +  +A  A   +L+L+P+ +G YVLLSN
Sbjct: 634 KLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSN 693

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  +RW +V EVRRTM K  ++K PG S +E+  ++  F +GD+SHPQ +EI+  L +
Sbjct: 694 IYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQ 753

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
              +L   GYVP T  V  D+E E++ED+L YHSEK+AI F +++      +R+ KNL++
Sbjct: 754 FICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKI 813

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   KLI+++  R IV+RD  R+HHF+DG CSC DYW
Sbjct: 814 CGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 163/304 (53%), Gaps = 9/304 (2%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+ +   M   G+  D+ TY  L+K       VR G++ H     NG+    F+ N L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY  F  +++A  +F+ M ER++V+W ++I+ +++    + A+ L   M  +GV P+ +T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  AC  L  L   ++ H+++ KVGL  +V V +AL+D YSK G ++ A +VFREM 
Sbjct: 389 FSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF- 365
             ++V W++++   A +  G EAL L+K M   GF   + T   VL AC+   +++ G  
Sbjct: 446 TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQ 505

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           ++   +K +  ++        ++D+  + G ++ A ++I N +   + + W T++     
Sbjct: 506 AHVHVLKFDQDLILN----NALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAGLAQ 560

Query: 426 HGHS 429
           +G S
Sbjct: 561 NGFS 564


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/515 (44%), Positives = 337/515 (65%), Gaps = 5/515 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKL 156
           IF+H+  PNIF  N  ++  A++++   A++ ++    S     PD  T+  +LKA + L
Sbjct: 46  IFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGL 105

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNS 214
           A V  G++ H++  + GFES +FV+NSL+ MY   G++  A  +F+ M   +R++V WN+
Sbjct: 106 AHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNA 165

Query: 215 VINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           +I G+A N K ++A+ +FR M    GV P+  T+VS+  ACA LGAL LG+    ++ + 
Sbjct: 166 MIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRR 225

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
            ++  + + NAL D Y+KCG I  A+RVF +M +R+ +SWS ++ GLA+ G   EA   F
Sbjct: 226 EMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCF 285

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            EM   G  P +V F+G+L AC+H G+V +G + F  M  EYG+ PK+EH+GC+VDLL R
Sbjct: 286 YEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSR 345

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A + I +M M PN +IW  LLG C I+  S   +     +L+L+  HSG YV L
Sbjct: 346 AGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYL 405

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           +N+Y+   R  +  + R  M +  V KTPG S +E+ N V EFFMGD SHP++ +I++M+
Sbjct: 406 ANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMI 465

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+  K+KL GY P+T+ V   I+EEEKEDALS HSEK+AIAF L++T+ GT +RVVKNL
Sbjct: 466 RELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNL 525

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           R+C DCH A K+IS +  REI+VRDRSRFHHFKDG
Sbjct: 526 RICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDG 560


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 352/584 (60%), Gaps = 8/584 (1%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           + E  I +V+  C+  LQ+       LK++H +S RH     + +L    I A       
Sbjct: 349 ANEVTILNVLPACLDKLQL-----RSLKELHGYSFRH--CFQHVELSNAFILAYAKCG-A 400

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  + D  + +WN +I G+A++ +P  A+ L  +M  SG +PD  T   LL A
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L  ++ G++ H   +RNG E+  FV  SL+  Y   G    A  +F+ M +++LV+W
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSW 520

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I+G++ NG P E+L LFR+  SEG++     +VS+F AC++L AL LG+ AH YV K
Sbjct: 521 NAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
              +++  V  +++D Y+K G I  +++VF  ++ +N  SW+ ++V   ++G GKEA+EL
Sbjct: 581 ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIEL 640

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           ++ M+  G +P   T++G+L AC H G+V+EG  YFK M++   I PK+EH+ C++D+L 
Sbjct: 641 YERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLA 700

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +  A   +  M    +  IW +LL +C   G   I E     LL+LEP  + +YVL
Sbjct: 701 RAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVL 760

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNLYA   +W  V+ VR+ M +  ++K  G S +E+G RV+ F +GD   P++ EI  +
Sbjct: 761 LSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVI 820

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
              + +++   GY P T +V  ++ EEEK D L  HSEK+AI+F L+ T  GT +R+ KN
Sbjct: 821 WRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKN 880

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+CADCH A KLISK   REIVVRD  RFHHF+DG CSC DYW
Sbjct: 881 LRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 167/314 (53%), Gaps = 7/314 (2%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LLQ C + K     +++H F        N+  L   LI        P+  +  +F +++ 
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLD-SRLVFDNMET 107

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            N+  WN ++ GY  +      V+++  +   +  +PD  T+P ++KA   + DVR+GE 
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEV 167

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H + I+ G    VFV N+LV MY   G V +A KVF+ M E +LV+WNS+I  F+ NG 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 225 PNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             ++  L  EM   EG+ PD  T+V++   CA  G + +G   H    K+GLS+ V VNN
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG--F 341
           A++  YSKCG +  AQ  F +   +N VSW+T++   ++ G   EA  L +EM+I G   
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEM 347

Query: 342 VPGEVTFVGVLYAC 355
              EVT + VL AC
Sbjct: 348 KANEVTILNVLPAC 361


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/518 (40%), Positives = 330/518 (63%), Gaps = 7/518 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF  + + ++ +WNT+I G A +      + +  +M  + +KPD+ T   +L  I++  D
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G++ H  +IR G ++ ++V +SL+ MYA    V D+C+VF L++ERD ++WNS+I G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
              NG  +E L  FR+M    ++P  Y+  S+  ACA L  L LG++ H Y+ + G  +N
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + + ++L+D Y+KCG I  A+++F  MR R+ VSW+ +++G A++G   +A+ELF++ME 
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMET 434

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G          VL ACSH G+VDE + YF  M  ++GI P +EH+  + DLLGRAG ++
Sbjct: 435 EGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLE 487

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +AY++I  M + P   IW TLL AC +H +  +AE   + +L+++P ++G Y+LL+N+Y+
Sbjct: 488 EAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYS 547

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             +RW    + R +M +  ++KTP  S +E+ N+V+ F  GD SHP  E+I   +  + +
Sbjct: 548 AARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVE 607

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
            ++ EGYVP T  V  D+EEE+K+  +  HSE++AI F ++NT  G  +RV KNLRVC D
Sbjct: 608 LMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTD 667

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISK+  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 668 CHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 193/413 (46%), Gaps = 43/413 (10%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S+ + +Q+HA  ++              IY+ ++L   +  +  +F+ +  P    W ++
Sbjct: 21  SRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINL---LHDSLRLFNTIHFPPALAWKSV 77

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           IR Y     P  ++  +  M  SG+ PD + +P +LK+ + L D+ +GE  H   IR G 
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 175 ESLVFVQNSLVHMYAAF-------------GHVKDAC-------------------KVFE 202
           +  ++  N+L++MY+               G V D                     K+FE
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFE 197

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
           +M E+DLV+WN++I G A NG   E L + REM    ++PD +T+ S+    AE   ++ 
Sbjct: 198 MMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISR 257

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+  H    + GL  ++ V ++L+D Y+KC  +  + RVF  + +R+ +SW++++ G   
Sbjct: 258 GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQ 317

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMP 379
           NG   E L  F++M +    P   +F  ++ AC+H   +  G     Y  R     G   
Sbjct: 318 NGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR----NGFDE 373

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            I     +VD+  + G ++ A +    M +  + V W  ++  C +HG +  A
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMVSWTAMIMGCALHGQAPDA 425


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 349/576 (60%), Gaps = 9/576 (1%)

Query: 46  ITLLQVCASSKH----KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +++L  C++SK     KL   H     H    ++  +G  LI ++ +    +  A  +F 
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHS---SDVQIGNALI-SMYARCGDLPKARELFY 389

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++ +WN +I GYA   +   A+ LY +M   G+KP   T+  LL A +  +    
Sbjct: 390 TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  H   +R+G +S   + N+L++MY   G + +A  VFE    RD+++WNS+I G A 
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G    A  LF+EM +E +EPD  T  S+ S C    AL LG++ H  + + GL  +VN+
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL 569

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL++ Y +CG +  A+ VF  ++ R+ +SW+ ++ G A  G   +A+ELF +M+  GF
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 342 VPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
            P +  TF  +L AC+H G+V EG+  F  M+ EYG++P IEH+GC+V LLGRA   ++A
Sbjct: 630 RPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEA 689

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
              I  M  PP+A +W TLLGAC IHG+ A+AE A +  L+L  ++   Y+LLSN+YA  
Sbjct: 690 ETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAA 749

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            RW +V ++RR M    ++K PG S +E+ N + EF   DRSHP+T EI+A L  ++ ++
Sbjct: 750 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEM 809

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           +  GY P T++V  D+ +  +E +L  HSE++AIA+ L+ T PGTP+R+ KNLR+C DCH
Sbjct: 810 EEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCH 869

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A K ISK+  REI+ RD +RFH FK+G CSC DYW
Sbjct: 870 TASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K++H  ++  G+   N D+  G  L+   V     +  A   F  + D ++  +N +I  
Sbjct: 249 KRIHKLTVEEGL---NSDIRVGTALVTMCVRCG-DVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            A+  + + A E Y +M   G+  +  TY  +L A S    +  G+  HS    +G  S 
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V + N+L+ MYA  G +  A ++F  M +RDL++WN++I G+A      EA+ L+++M S
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV+P   T + L SACA   A A G+  H  + + G+  N ++ NAL++ Y +CG ++ 
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           AQ VF   + R+ +SW++++ G A +G  + A +LF+EM+     P  +TF  VL  C +
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
              ++ G     R+  E G+   +     ++++  R G ++ A     + L   + + W 
Sbjct: 545 PEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-LQHRDVMSWT 602

Query: 418 TLLGACTIHG 427
            ++G C   G
Sbjct: 603 AMIGGCADQG 612



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 191/390 (48%), Gaps = 13/390 (3%)

Query: 34  QENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSL 89
           Q  P  +     + LLQ C   +   + K++HA  +  GV    PD  L   LI   V  
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGV---GPDIFLSNLLINMYVKC 75

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              +  AH +F  +   ++ +WN++I  YA+      A +L+ +M  +G  P+  TY  +
Sbjct: 76  RSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISI 134

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A    A++  G++ HS  I+ G++    VQNSL+ MY   G +  A +VF  +S RD+
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V++N+++  +A      E L LF +M+SEG+ PD  T ++L  A      L  G+R H  
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             + GL+ ++ V  AL+    +CG + +A++ F+ +  R+ V ++ L+  LA +G   EA
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEA 314

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
            E +  M   G      T++ +L ACS    ++ G      + ++ G    ++    ++ 
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALIS 373

Query: 390 LLGRAGLVKQAYEYIQNM----LMPPNAVI 415
           +  R G + +A E    M    L+  NA+I
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAII 403



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 197/388 (50%), Gaps = 14/388 (3%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I++L  C S       K++H+  I+ G    +P +   L+ ++      +  A  +F+ +
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQ-RDPRVQNSLL-SMYGKCGDLPRARQVFAGI 189

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ ++NTM+  YA+ A     + L+ +M   GI PD  TY  LL A +  + +  G+
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H + +  G  S + V  +LV M    G V  A + F+ +++RD+V +N++I   A +G
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG 309

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA   +  M S+GV  +  T +S+ +AC+   AL  G+  H+++ + G S +V + N
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN 369

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y++CG +  A+ +F  M KR+ +SW+ ++ G A      EA+ L+K+M+  G  P
Sbjct: 370 ALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG----CMVDLLGRAGLVKQ 399
           G VTF+ +L AC++     +G     +M  E  +   I+  G     ++++  R G + +
Sbjct: 430 GRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           A    +      + + W +++     HG
Sbjct: 485 AQNVFEGT-QARDVISWNSMIAGHAQHG 511



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 8/294 (2%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D  TY  LL+  ++   +   ++ H+  +  G    +F+ N L++MY     V DA +VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + M  RD+++WNS+I+ +A  G   +A  LF EM + G  P+  T +S+ +AC     L 
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G++ H+ + K G   +  V N+LL  Y KCG +  A++VF  +  R+ VS++T++   A
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
              + KE L LF +M   G  P +VT++ +L A +   M+DEG     ++  E G+   I
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDI 264

Query: 382 EHFGCMVDLLGRAGLV---KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
                +V +  R G V   KQA++ I +     + V++  L+ A   HGH+  A
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADR----DVVVYNALIAALAQHGHNVEA 314



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 102/183 (55%), Gaps = 4/183 (2%)

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            E D  T V+L   C     L   +R H  + + G+  ++ ++N L++ Y KC  ++ A 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF+EM +R+ +SW++L+   A  GF K+A +LF+EM+  GF+P ++T++ +L AC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 360 MVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            ++ G     + +K  Y   P++++   ++ + G+ G + +A +     + P + V + T
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAG-ISPRDVVSYNT 199

Query: 419 LLG 421
           +LG
Sbjct: 200 MLG 202


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/557 (40%), Positives = 345/557 (61%), Gaps = 33/557 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F+ +++ ++ +WN+MI G+ +  +P  A+EL+ KM    +K    T   +L A
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---- 208
            +K+ ++  G Q  S    N     + + N+++ MY   G ++DA ++F+ M E+D    
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301

Query: 209 ---------------------------LVAWNSVINGFASNGKPNEALTLFREMA-SEGV 240
                                      +VAWN++I+ +  NGKPNEAL +F E+   + +
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           + +  T+VS  SACA++GAL LGR  H+Y+ K G+  N +V +AL+  YSKCG +  ++ 
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + KR+   WS ++ GLA++G G EA+++F +M+     P  VTF  V  ACSH G+
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDE  S F +M+  YGI+P+ +H+ C+VD+LGR+G +++A ++I+ M +PP+  +W  LL
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC IH +  +AE+A + LL+LEP++ G +VLLSN+YA   +W NV E+R+ M    +KK
Sbjct: 542 GACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKK 601

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+   + EF  GD +HP +E+++  L E+ +KLK  GY P    V   IEEEE
Sbjct: 602 EPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

Query: 541 -KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE +L+ HSEK+AI + L++T     +RV+KNLRVC DCH   KLIS++Y REI+VRDR
Sbjct: 662 MKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDR 721

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHF++G CSC D+W
Sbjct: 722 YRFHHFRNGQCSCNDFW 738



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 234/437 (53%), Gaps = 43/437 (9%)

Query: 28  HSTPASQENPITSVVR-KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAI 86
           H   ++   P T+  R + I+L++ C S + +LKQ H   IR G   +     K    A 
Sbjct: 15  HPNFSNPNQPTTNNERSRHISLIERCVSLR-QLKQTHGHMIRTGTFSDPYSASKLFAMAA 73

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHT 145
           +S    + YA  +F  +  PN F WNT+IR YA   +P+L++  +  M   S   P+ +T
Sbjct: 74  LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +PFL+KA ++++ + +G+  H +A+++   S VFV NSL+H Y + G +  ACKVF  + 
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           E+D+V+WNS+INGF   G P++AL LF++M SE V+    TMV + SACA++  L  GR+
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV--- 322
             +Y+ +  ++ N+ + NA+LD Y+KCG I  A+R+F  M +++ V+W+T++ G A+   
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313

Query: 323 ----------------------------NGFGKEALELFKEMEIGGFVP-GEVTFVGVLY 353
                                       NG   EAL +F E+++   +   ++T V  L 
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373

Query: 354 ACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           AC+  G ++ G    SY K+    +GI         ++ +  + G ++++ E + N +  
Sbjct: 374 ACAQVGALELGRWIHSYIKK----HGIRMNFHVTSALIHMYSKCGDLEKSRE-VFNSVEK 428

Query: 411 PNAVIWRTLLGACTIHG 427
            +  +W  ++G   +HG
Sbjct: 429 RDVFVWSAMIGGLAMHG 445



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 153/313 (48%), Gaps = 12/313 (3%)

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMSERDLV 210
           I +   +R  +QTH   IR G  S  +  + L  M A  +F  ++ A KVF+ + + +  
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTY 269
           AWN++I  +AS   P  ++  F +M SE    P+ YT   L  A AE+ +L+LG+  H  
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             K  +  +V V N+L+  Y  CG + +A +VF  +++++ VSW++++ G    G   +A
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LELFK+ME        VT VGVL AC+    ++ G      + +E  +   +     M+D
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAMLD 275

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           +  + G ++ A      M    N V W T+L    I   S   E AR  L  +  K   D
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAI---SEDYEAAREVLNSMPQK---D 328

Query: 450 YVLLSNLY-AYEQ 461
            V  + L  AYEQ
Sbjct: 329 IVAWNALISAYEQ 341


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/434 (48%), Positives = 301/434 (69%)

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242
           +++  YA +G + +A  +F+ + ERD + WN +I+G+A +G PNE L LFR+M +  V P
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           +  T++++ SAC + GAL  GR  H+Y+   G+  NV V  +L+D YSKCG +  A+ VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
             +  ++ V+W+++VVG A++GF ++AL LFKEM + G+ P ++TF+GVL ACSH G+V 
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           EG+ +F  MKDEYGI PK+EH+GCMV+LLGRAG +++AYE ++NM +  + V+W TLLGA
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
           C +HG+ A+ E     L+     +SG YVLLSN+YA    W  V  VR  M +   +K P
Sbjct: 251 CRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEP 310

Query: 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
           G S +E+ N+V EF  GD  HP++ EI+ ML EI   LK  GY P+T+ V  D+E+ +KE
Sbjct: 311 GCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKE 370

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
            +L  HSEK+A+AF L+ T PGT +++VKNLRVCADCH   KLISK+  R++V+RDR+RF
Sbjct: 371 RSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRF 430

Query: 603 HHFKDGHCSCRDYW 616
           HHF +G CSC DYW
Sbjct: 431 HHFVNGLCSCGDYW 444



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 2/231 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +++ +   WN MI GYA+   P   + L+ +M  + ++P+  T   +L A  +
Sbjct: 25  ARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQ 84

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G   HS    NG    V V  SL+ MY+  G ++DA  VFE +S +D+VAWNS+
Sbjct: 85  TGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSM 144

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVWKVG 274
           + G+A +G   +AL LF+EM   G +P   T + + +AC+  G ++ G +  ++   + G
Sbjct: 145 VVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYG 204

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
           +   V     +++   + G +  A  + + M   ++ V W TL+    ++G
Sbjct: 205 IEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHG 255


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/594 (40%), Positives = 350/594 (58%), Gaps = 36/594 (6%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           ++KQ HA  +  G+  N+  +  +L+   AI S S P  YA +I++ +  P +F  N MI
Sbjct: 46  QIKQAHARILVLGLA-NDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMI 104

Query: 116 RGYAESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           R + +   P  ++ LYS M  S +  P+ HT  F+L+A S    +R G Q  +  I+ GF
Sbjct: 105 RCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGF 164

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNSVINGFA------------- 220
              VFV+N+L+H+Y     V+ A +VF E+ S RD+V+WNS+I GF              
Sbjct: 165 VKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFV 224

Query: 221 ------------------SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                              NG+  +AL  F+E+  + + P+   +VSL +A A+LG L  
Sbjct: 225 EMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEY 284

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+R H+    +      ++  AL+D Y+KCG I  ++ +F  M +++  SW+ ++ GLA 
Sbjct: 285 GKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLAT 344

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G G+EAL LF++    GF P  VTF+GVL ACS  G+V EG  +FK M D YGI P++E
Sbjct: 345 HGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEME 404

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+GCMVDLL RAG V  A E I  M  PP+ V+W ++LG+C +HG   + E   + L+Q+
Sbjct: 405 HYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQM 464

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           +P H+G YV L+ ++A  ++W +V +VRR M +    K  G SL+E   RV  F  GD+ 
Sbjct: 465 DPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKE 524

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           H +T EI+ ML  +  ++   GY     +V  DIEEEEKE+A+  HSE++AIAF L+ T 
Sbjct: 525 HERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTK 584

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            G  +R++KNLRVC DCH   K+IS V+ REI+VRD SRFHHFK G CSC+DYW
Sbjct: 585 DGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 358/575 (62%), Gaps = 12/575 (2%)

Query: 47  TLLQVCASSKHK--LKQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFPMSYAHNIFSHV 103
           T++++CA+ K     KQ+H   I++G   ++ DL  K  +    S    +  A  +F  +
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNG---SDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355

Query: 104 QD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
               N+ +W  +I GY ++     A+ L+ +M   G++P+  TY  +L A + ++     
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP---- 411

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H++ ++  +E+   V  +L   Y+  G   +A K+FEL+ E+D+VAW+++++G+A  
Sbjct: 412 SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQM 471

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSDNVNV 281
           G    A+ +F ++A EGVEP+ +T  S+ +ACA    ++  G++ H+   K G S+ + V
Sbjct: 472 GDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCV 531

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           ++AL+  Y+K G I +A  VF+    R+ VSW++++ G A +G GK++L++F+EM     
Sbjct: 532 SSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL 591

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
               +TF+GV+ AC+H G+V+EG  YF  M  +Y I+P +EH+ CMVDL  RAG++++A 
Sbjct: 592 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 651

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           + I  M  P  A IWRTLL AC +H +  + E+A   L+ L+P+ S  YVLLSN+YA   
Sbjct: 652 DLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAG 711

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W    +VR+ M  ++VKK  G+S +E+ N+ F F  GD SHPQ++ I+  L E++ +LK
Sbjct: 712 NWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 771

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GY P T+ V  D+EEE KE  LS HSE++AIAF L+ T PGTP+++VKNLRVC DCH 
Sbjct: 772 DAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHT 831

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            IKLISK+  R+IVVRD +RFHHFK G CSC DYW
Sbjct: 832 VIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 164/310 (52%), Gaps = 5/310 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+VC     ++  KQVH   I+ G  + +  +G  L+   +     +     +F  ++ 
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGF-VEDVSVGTSLVDMYMKTE-SVEDGERVFDEMRV 155

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+ +W +++ GY ++     A++L+S+M + GIKP+  T+  +L  ++    V  G Q 
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ I++G +S +FV NS+V+MY+    V DA  VF+ M  R+ V+WNS+I GF +NG  
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA  LF  M  EGV+       ++   CA +  ++  ++ H  V K G   ++N+  AL
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 286 LDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +  YSKC  I  A ++F  M   +N VSW+ ++ G   NG    A+ LF +M   G  P 
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395

Query: 345 EVTFVGVLYA 354
             T+  +L A
Sbjct: 396 HFTYSTILTA 405



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           ++  +F       +   N ++  ++ +     A+ L+  +  SG   D  +   +LK   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            L D  +G+Q H   I+ GF   V V  SLV MY     V+D  +VF+ M  +++V+W S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++ G+  NG   +AL LF +M  EG++P+ +T  ++    A  GA+  G + HT V K G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L   + V N++++ YSK  ++  A+ VF  M  RNAVSW++++ G   NG   EA ELF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 335 EMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSY 367
            M + G    +  F  V+  C+           HC ++  G  +
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/518 (41%), Positives = 325/518 (62%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + +  +WNT+I G AE      A+ +  +M   G  PDT T   +L   ++ AD
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           ++ G   H  AI+NGF++ VFV +SL+ MYA    +  + KVF+  S+ D V WNS++ G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG   EAL +FR M   GV P   T  SL  A   L  L LG++ H Y+ +   +DN
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + ++++L+D Y KCG +  A+RVF  ++  + VSW+ +++G A++G   EA  LF+ ME+
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 365

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
           G   P  +TF+ VL ACSH G+VD G+ YF  M ++YG +P +EH   + D LGRAG + 
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 425

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +AY +I  M + P + +W TLL AC +H ++ +AE     + +LEPK  G +V+LSN+Y+
Sbjct: 426 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              RW    ++R++M  + +KK P  S +E+ N++  F   D+SHP  + I   L   ++
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSE 545

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           ++  +GYVP  E+V  DIEEE+K + L  HSEK+AI F +++T PGT +RV+KNLRVC D
Sbjct: 546 QMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVD 605

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH+A K ISK+ +REIVVRD +RFH FKDG+CSC D+W
Sbjct: 606 CHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 34/365 (9%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH---TYPFLLKAISKLADVRMGEQTH 166
           +W   IR  A     L A+ L+ +M  S + P +    + P  LK+ + L    +    H
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLH 72

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAF---------------GHVKDAC-----KVFELMSE 206
           ++AIR+G  +  F  N+L+++                   G ++ A      KVF+ M E
Sbjct: 73  ALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD V+WN++I G A + +  EAL++ REM  +G  PD +T+ ++    AE   +  G   
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y  K G  ++V V ++L+D Y+ C  +  + +VF      +AV W++++ G A NG  
Sbjct: 193 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 252

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEH 383
           +EAL +F+ M   G  P  VTF  ++ A  +  ++  G    +Y  R +    I      
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFIS--- 309

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQ 441
              ++D+  + G V  A   + N +  P+ V W  ++    +HG +  A     R  L  
Sbjct: 310 -SSLIDMYCKCGNVDIA-RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN 367

Query: 442 LEPKH 446
           ++P H
Sbjct: 368 VKPNH 372



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 146/283 (51%), Gaps = 5/283 (1%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           P T  +   + +   CA  K  +  VH ++I++G   N+  +G  LI    + +  M Y+
Sbjct: 168 PDTFTLSTVLPIFAECADIKRGM-VVHGYAIKNGFD-NDVFVGSSLIDMYANCT-QMDYS 224

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F    D +   WN+M+ GYA++ +   A+ ++ +M  +G++P   T+  L+ A   L
Sbjct: 225 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL 284

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + +R+G+Q H+  IR  F   +F+ +SL+ MY   G+V  A +VF  +   D+V+W ++I
Sbjct: 285 SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMI 344

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-RRAHTYVWKVGL 275
            G+A +G   EA  LF  M    V+P+  T +++ +AC+  G +  G +  ++   + G 
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGF 404

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
             ++    AL D   + G +  A     EM+ K  +  WSTL+
Sbjct: 405 VPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/598 (37%), Positives = 353/598 (59%), Gaps = 21/598 (3%)

Query: 30  TPASQENPITSVVR-----------KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           TP SQE+  + V+             C  L QV        +QVHA    +G    N  +
Sbjct: 37  TPCSQESECSHVLHYDTKRFRSSLLSCRNLFQV--------RQVHAQIATNGA-FRNLAV 87

Query: 79  GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
              L+Y  V     +  A  +F  +   + ++W+ ++ GYA+  N      ++ ++  SG
Sbjct: 88  ANKLLYMYVERG-ALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSG 146

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
              D ++ P +++A   L D++ G   H + ++ G +   FV  +LV MYA    V+DA 
Sbjct: 147 APLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAH 206

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           ++F  M +RDL  W  +I   A +G P E+L  F  M ++G+ PD   +V++  ACA+LG
Sbjct: 207 QIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLG 266

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           A+   +  H Y+   G S +V +  A++D Y+KCG + +A+ +F  M+ RN ++WS ++ 
Sbjct: 267 AMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIA 326

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
               +G G++ALELF  M   G +P  +TFV +LYACSH G+++EG  +F  M DEYG+ 
Sbjct: 327 AYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVT 386

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
           P ++H+ CMVDLLGRAG + +A E I+ M +  + V+W  LLGAC IH H  +AE    +
Sbjct: 387 PDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARS 446

Query: 439 LLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
           LL+L+ +  G YVLLSN+YA   +W ++ + R  M K  ++K PG + +E+G ++++F +
Sbjct: 447 LLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGV 506

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD++HP++ EI+ ML  + +KL++ GY P T +V  D++EE K+  L  HSEK+AIAF L
Sbjct: 507 GDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGL 566

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +    G P+R+ KNLRVC DCH   K +S +  + I+VRD  RFHHFK+G CSCRDYW
Sbjct: 567 LVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/523 (43%), Positives = 324/523 (61%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GY +S     A+  + +M  + + P+  T   +L A   
Sbjct: 216 ARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGH 275

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                +G+   S    NGF S + + N+L+ MY   G    A ++F+ + E+D+++WN++
Sbjct: 276 TRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTM 335

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VG 274
           I G++      EAL LF  M    V+P+  T + +  ACA LGAL LG+  H Y+ K + 
Sbjct: 336 IGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLR 395

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            S N ++  +L+D Y+KCG I AA+RVFR M  RN  SW+ ++ G A++G  + AL LF 
Sbjct: 396 NSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFS 455

Query: 335 EM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           EM   G F P ++TFVGVL AC+  G+VD G  YF+ M  +YGI PK++H+GCM+DLL R
Sbjct: 456 EMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLAR 515

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           A   ++A   ++NM M P+  IW +LL AC  HG     E     L QLEP+++G +VLL
Sbjct: 516 AEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLL 575

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW +V  +R  +  + +KK PG + +E+   V EF +GD+ HP+   I+ ML
Sbjct: 576 SNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKML 635

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+ K L+  G+VP T  V  D++EE KE ALS HSEK+AI+F L+ T PGT +R+VKNL
Sbjct: 636 NEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNL 695

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH A KLISK+++REI+ RDR+RFHHFKDG CSC D W
Sbjct: 696 RVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 226/451 (50%), Gaps = 54/451 (11%)

Query: 25  SLYHSTPAS-------QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD 77
           S+ H  PAS       +++P  +++ KC  +        +  KQ+H+  I+ G  LNN  
Sbjct: 11  SILHFLPASDPPYKILEQHPYLNLLEKCKNI--------NTFKQIHSLIIKTG--LNNTV 60

Query: 78  L--GKYLIYAIVSLSFPMSYAHNIFSHVQDP---NIFTWNTMIRGYAESANPLLAVELYS 132
               K + +  VS S  +SYA ++F   Q     N+F WN++IRGY+ S++PL ++ L+S
Sbjct: 61  FVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFS 120

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           +M   G++P++HT+PFL K+ +K      G+Q H+ A++        V  S++HMYA+ G
Sbjct: 121 RMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVG 180

Query: 193 H-------------------------------VKDACKVFELMSERDLVAWNSVINGFAS 221
                                           + DA ++F+ +  +D+V+WN++I+G+  
Sbjct: 181 EMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQ 240

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G+  EA+  F EM    V P+  TMV + SAC    +  LG+   ++V   G   N+ +
Sbjct: 241 SGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQL 300

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL+D Y KCG    A+ +F  + +++ +SW+T++ G +     +EAL LF+ M     
Sbjct: 301 TNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNV 360

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P +VTF+G+L+AC+  G +D G      +            +  ++D+  + G ++ A 
Sbjct: 361 KPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAE 420

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
              ++M    N   W  +L    +HGH+  A
Sbjct: 421 RVFRSM-HSRNLASWNAMLSGFAMHGHAERA 450


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/624 (40%), Positives = 372/624 (59%), Gaps = 46/624 (7%)

Query: 31  PASQENP--ITSVVRK-CITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
           P S  NP  + S+ +K  I+LLQ    SKH  ++  +HA  IR+G    +P    ++++ 
Sbjct: 35  PNSNSNPKSLKSLDQKQIISLLQ---RSKHINQVLPIHAQLIRNGHS-QDP----FMVFE 86

Query: 86  IV---SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           ++   S    + YA  IF +  +PN++ +  +I G+  S N   A++LYS+M    I PD
Sbjct: 87  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPD 146

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +    +LKA      +R G + HS A++ G  S   V+  ++ +Y   G + DA +VFE
Sbjct: 147 NYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFE 206

Query: 203 LMSE------------------------------RDLVAWNSVINGFASNGKPNEALTLF 232
            M E                              +D V W ++I+GF  N + N AL  F
Sbjct: 207 EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAF 266

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           R M  E V P+ +T+V + SAC++LGAL +GR  H+Y+ K  +  N+ V NAL++ YS+C
Sbjct: 267 RGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRC 326

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  AQ VF EM+ R+ ++++T++ GL++NG  ++A+ELF+ M      P  VTFVGVL
Sbjct: 327 GSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVL 386

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+VD GF  F  M  +YG+ P+IEH+GCMVDLLGR G +++AY+ I+ M M P+
Sbjct: 387 NACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPD 446

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            ++  TLL AC +H +  + E     L       SG YVLLS++YA   +W    +VR  
Sbjct: 447 HIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAK 506

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M +  ++K PG S +E+ N + EF +GD  HP+ E I+  L E+ + L+LEGY P  E V
Sbjct: 507 MKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVV 566

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             DIE+ EKE AL+ HSE++AI + L++T P T +RV+KNLRVC DCH AIKLI+K+  R
Sbjct: 567 LQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRR 626

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           ++VVRDR+RFH+F++G CSC DYW
Sbjct: 627 KVVVRDRNRFHYFENGACSCGDYW 650


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/597 (39%), Positives = 359/597 (60%), Gaps = 52/597 (8%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN--------IFSHVQDPNIFTWN 112
           Q+HA  +RH + L+         Y +++L    +YA +        +F    DP++F + 
Sbjct: 47  QIHAAILRHNLLLHPR-------YPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 99

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
             I   + +     A  LY ++  S I P+  T+  LLK+ S     + G+  H+  ++ 
Sbjct: 100 AAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKF 155

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------------------------- 207
           G     +V   LV +YA  G V  A KVF+ M ER                         
Sbjct: 156 GLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF 215

Query: 208 ------DLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGAL 260
                 D+V+WN +I+G+A +G PN+AL LF+++ +EG  +PD  T+V+  SAC+++GAL
Sbjct: 216 DSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGAL 275

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H +V    +  NV V   L+D YSKCG +  A  VF +  +++ V+W+ ++ G 
Sbjct: 276 ETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGY 335

Query: 321 AVNGFGKEALELFKEME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           A++G+ ++AL LF EM+ I G  P ++TF+G L AC+H G+V+EG   F+ M  EYGI P
Sbjct: 336 AMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           KIEH+GC+V LLGRAG +K+AYE I+NM M  ++V+W ++LG+C +HG   + +     L
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYL 455

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           + L  K+SG YVLLSN+YA    +  V +VR  M ++ + K PG S +E+ N+V EF  G
Sbjct: 456 IGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAG 515

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           DR H +++EI+ ML +I++++K  GYVP T  V  D+EE EKE +L  HSE++AIA+ L+
Sbjct: 516 DREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLI 575

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +T PG+P+++ KNLRVC+DCH   KLISK+  R+IV+RDR+RFHHF DG CSC D+W
Sbjct: 576 STKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/573 (39%), Positives = 350/573 (61%), Gaps = 3/573 (0%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L VC       KLK++H +++RHG  + + +L      A  +    + YA  +F  +
Sbjct: 404 LNVLPVCEEEIQFLKLKEIHGYALRHGF-IQSDELVANAFVAGYAKCGSLHYAEGVFCGM 462

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +   + +WN +I G+ ++  P  A++LY  M  SG++PD  T   LL A ++L  +  G+
Sbjct: 463 ESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK 522

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H   +RNGFE   F+  SLV +Y   G +  A   F+ M E++LV WN++INGF+ N 
Sbjct: 523 EIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNE 582

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P +AL +F +M S  + PD  +++    AC+++ AL LG+  H +  K  L+++  V  
Sbjct: 583 FPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTC 642

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+D Y+KCG +  +Q +F  +  +  V+W+ L+ G  ++G G++A+ELFK M+  GF P
Sbjct: 643 SLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRP 702

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             VTF+ +L AC+H G+V EG  Y  +M+  +GI PK+EH+ C+VD+LGRAG + +A E 
Sbjct: 703 DSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALEL 762

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           +  +   P++ IW +LL +C  +    I E   + LL+L P  + +YVL+SN YA   +W
Sbjct: 763 VNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKW 822

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V+++R+ M +  ++K  G S +E+G +V  F +GD S  Q+ +I     E+ KK+   
Sbjct: 823 DEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKI 882

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY P T  V  ++EE+EK   L  HSEK+AI+F L+NTA GT +RV KNLR+C DCH AI
Sbjct: 883 GYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAI 942

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KL+SK+  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 943 KLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 150/261 (57%), Gaps = 5/261 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLA 157
           +F+  +  N+F WN ++ GY  ++    AV ++ +M  ++   PD  T P ++KA   + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           DVR+GE  H  A++    S VFV N+L+ MY  FG V+ A KVF+ M +R+LV+WNSV+ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 218 GFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
               NG   E+  LF+ +    EG+ PD  TMV++   CA  G + LG   H    K+GL
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + VN++LLD YSKCG +  A RV  +  ++N +SW++++ G + +   + A EL ++
Sbjct: 331 CGELKVNSSLLDMYSKCGYLCEA-RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRK 389

Query: 336 MEIGGFVP-GEVTFVGVLYAC 355
           M++   V   EVT + VL  C
Sbjct: 390 MQMEDKVKVNEVTLLNVLPVC 410



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 8/310 (2%)

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS-VAIRNGFE 175
           G    A   L   L   +  S  KP       LL+   +  ++ +G + H+ ++    F+
Sbjct: 68  GNLNQAFNFLQSNLNDVVSSSNSKP-KQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQ 126

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           + V +   LV MY+      D+C VF     ++L  WN++++G+  N    +A+ +F EM
Sbjct: 127 NDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEM 186

Query: 236 AS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
            S     PD +T+  +  AC  +  + LG   H +  K  +  +V V NAL+  Y K G 
Sbjct: 187 ISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGF 246

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG--GFVPGEVTFVGVL 352
           + +A +VF +M +RN VSW++++     NG  +E+  LFK +  G  G +P   T V V+
Sbjct: 247 VESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVI 306

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
             C+  G V  G   F  +  + G+  +++    ++D+  + G + +A           N
Sbjct: 307 PLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT--NEKN 363

Query: 413 AVIWRTLLGA 422
            + W +++G 
Sbjct: 364 VISWNSMIGG 373


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/577 (40%), Positives = 351/577 (60%), Gaps = 13/577 (2%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           +++L  CA ++     ++VHAF++R G    V ++   L  Y     V        A  +
Sbjct: 331 VSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVD------SARKV 384

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +QD N  +WN MI+GYAE+ +   A+ L+ +M   G+     +    L A  +L  +
Sbjct: 385 FDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFL 444

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G + H + +R G ES V V N+L+ MY        A +VF+ +  +  V+WN++I G 
Sbjct: 445 DEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGC 504

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG   +A+ LF  M  E V+PD +T+VS+  A A++      R  H Y  ++ L  +V
Sbjct: 505 TQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV 564

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  AL+D Y+KCG +  A+ +F   R R+ ++W+ ++ G   +G GK A+ELF+EM+  
Sbjct: 565 YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSS 624

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G VP E TF+ VL ACSH G+VDEG  YF  MK++YG+ P +EH+G MVDLLGRAG + +
Sbjct: 625 GKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHE 684

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A+ +IQ M M P   ++  +LGAC +H +  +AE +   + +LEP+    +VLL+N+YA 
Sbjct: 685 AWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYAN 744

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
              W +V  VR  M K+ ++KTPG S+V+L N +  F+ G  +H Q ++I+A LA++ ++
Sbjct: 745 ASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEE 804

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GYVP T+++  D+E++ K   L+ HSEK+AIA+ L+ TAPGT +++ KNLRVC DC
Sbjct: 805 IKAVGYVPDTDSIH-DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDC 863

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A KLIS V  REI++RD  RFHHFKDG CSC DYW
Sbjct: 864 HNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 356/577 (61%), Gaps = 35/577 (6%)

Query: 66  SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPL 125
           ++ HG   +N  + K  I+ + SL   ++YA  IF       + TWN ++ GY       
Sbjct: 161 AVIHGFLDSNLFVQKGFIH-LFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYE 219

Query: 126 LAVELYSKMH--VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESLVFVQN 182
            +  L+ +M      + P++ T   +L A SKL D+  G+  ++  I+ G  E  + ++N
Sbjct: 220 ESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILEN 279

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN---------------- 226
           +L+ M+A+ G +  A  VF+ M  RD+++W S++ GFA+  + +                
Sbjct: 280 ALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVS 339

Query: 227 ---------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
                          E LTLFR+M    V+PD +TMVS+ +ACA LGAL LG  A TY+ 
Sbjct: 340 WTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID 399

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K  + ++  + NAL+D Y KCG +  A+++F EM+K++  +W+ ++VGLA NG G+EAL 
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F  M      P E+T++GV+ AC+H G+V +G  +F  M  ++GI P + H+GCMVDLL
Sbjct: 460 MFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG +K+A E I NM + PN+++W +LLGAC +H +  +AE+A + +L+LEP++   YV
Sbjct: 520 GRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYV 579

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LL N+YA  ++W N+  VR+ M++  +KK PG SL+E+   V+EF  GD+SHPQ++EI+A
Sbjct: 580 LLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYA 639

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L  + + L   GY P T  VF D+ EE+KE AL  HSEK+AIA+ L+++  G  +R+VK
Sbjct: 640 KLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVK 699

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           NLR+C DCH    ++SKVY+RE++VRD++RFHHF+ G
Sbjct: 700 NLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 229/440 (52%), Gaps = 38/440 (8%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           P+ S V+  I+LL+ C ++ +++ Q+H+ +I+ G+  N+  L K +I+     S  + YA
Sbjct: 30  PLHSFVKSPISLLETC-NTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYA 88

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  +  P++F WNTMI+GY+        V LY  M V  IKPD  T+PFLLK  +K 
Sbjct: 89  RKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKD 148

Query: 157 ADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             ++ G+   + A+ +GF +S +FVQ   +H+++  G V  A K+F++    ++V WN V
Sbjct: 149 MALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVV 208

Query: 216 INGFASNGKPNEALTLFREMAS--EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++G+    +  E+  LF EM    E V P+  T+V + SAC++L  L  G+  +    K 
Sbjct: 209 LSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKE 268

Query: 274 GLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA----------- 321
           G+ + N+ + NAL+D ++ CG + AA+ VF EM+ R+ +SW+++V G A           
Sbjct: 269 GIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKY 328

Query: 322 ---------------VNGF-----GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
                          ++G+      KE L LF++M++    P E T V +L AC+H G +
Sbjct: 329 FDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGAL 388

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           + G  + K   D+  I         ++D+  + G V++A + I N +   +   W  ++ 
Sbjct: 389 ELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKA-KKIFNEMQKKDKFTWTAMIV 446

Query: 422 ACTIHGHSAIAEIARSTLLQ 441
               +GH   A    S +L+
Sbjct: 447 GLANNGHGEEALTMFSYMLE 466


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/564 (41%), Positives = 345/564 (61%), Gaps = 17/564 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN-------IFSHVQDPNIFTWN 112
           KQVH     H + +NN      +  + VS +   +Y+ N       I     + ++  WN
Sbjct: 437 KQVHV----HAIKINN------VSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVAWN 486

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            M+ GY +S +    ++L++ MH  G + D  T   + K    L  +  G+Q H+ AI++
Sbjct: 487 AMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS 546

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G++  ++V + ++ MY   G +  A   F+ +   D VAW ++I+G   NG+   A  +F
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVF 606

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            +M   GV PD +T+ +L  A + L AL  GR+ H    K+  +++  V  +L+D Y+KC
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKC 666

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  A  +F+ +   N  +W+ ++VGLA +G GKE L+LFK+M+  G  P +VTF+GVL
Sbjct: 667 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVL 726

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+V E + + + M  +YGI P+IEH+ C+ D LGRAGLVKQA   I++M M  +
Sbjct: 727 SACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEAS 786

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
           A ++RTLL AC + G +   +   + LL+LEP  S  YVLLSN+YA   +W  ++  R  
Sbjct: 787 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 846

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M   +VKK PG S +E+ N++  F + DRS+ QTE I+  + ++ + +K EGYVP T+  
Sbjct: 847 MKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFT 906

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             D+EEEEKE AL YHSEK+A+AF L++T P TP+RV+KNLRVC DCH A+K I+KVY+R
Sbjct: 907 LVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNR 966

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EIV+RD +RFH FKDG CSC DYW
Sbjct: 967 EIVLRDANRFHRFKDGICSCGDYW 990



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 20/325 (6%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N  +  Y  S      ++ ++ M  S ++ D  T+  +L    K+  + +G+Q H +A++
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            G + ++ V NSL++MY        A  VF+ MSERDL++WNSVI G A NG   EA+ L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 232 FREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           F ++   G++PD YTM S+  A + L   L+L ++ H +  K+    +  V+ AL+D YS
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +   +  A+ +F E    + V+W+ ++ G   +  G + L+LF  M   G    + T   
Sbjct: 464 RNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK--------QAYE 402
           V   C     +++G     +    Y I       G  +DL   +G++          A +
Sbjct: 523 VFKTCGFLFAINQG-----KQVHAYAIKS-----GYDLDLWVSSGILDMYVKCGDMSAAQ 572

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
           +  + +  P+ V W T++  C  +G
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENG 597



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 131/273 (47%), Gaps = 35/273 (12%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   ++  WN M++ Y E      A++L S  H SG+ P+  T    L+ +++++ 
Sbjct: 202 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT----LRLLARIS- 256

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
              G+ + +  ++                  +F +  DA  V E++        N  ++ 
Sbjct: 257 ---GDDSDAGQVK------------------SFANGNDASSVSEIIFR------NKGLSE 289

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +G+ +  L  F +M    VE D  T + + +   ++ +LALG++ H    K+GL   
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V+N+L++ Y K      A+ VF  M +R+ +SW++++ G+A NG   EA+ LF ++  
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            G  P + T   VL A S    + EG S  K++
Sbjct: 410 CGLKPDQYTMTSVLKAASS---LPEGLSLSKQV 439



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 6/208 (2%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           + FL  AI+  +D+ +G+ TH+  +        F+ N+L+ MY+  G +  A +VF+ M 
Sbjct: 43  FGFLRNAITS-SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101

Query: 206 ERDLVAWNSVINGFASNGKP-----NEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           +RDLV+WNS++  +A + +       +A  LFR +  + V     T+  +   C   G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
                 H Y  K+GL  +  V  AL++ Y K G +   + +F EM  R+ V W+ ++   
Sbjct: 162 WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTF 348
              GF +EA++L       G  P E+T 
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 75  NPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESA-----NPLL 126
           NP+  ++LI  ++S+      ++YA  +F  + D ++ +WN+++  YA+S+     N   
Sbjct: 71  NPE--RFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQ 128

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A  L+  +    +     T   +LK       V   E  H  A + G +   FV  +LV+
Sbjct: 129 AFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVN 188

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           +Y  FG VK+   +FE M  RD+V WN ++  +   G   EA+ L     S G+ P+  T
Sbjct: 189 IYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT 248

Query: 247 M 247
           +
Sbjct: 249 L 249


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 340/551 (61%), Gaps = 8/551 (1%)

Query: 74  NNPDLGKYLI-YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL--AVEL 130
           +NP + + L+ +  VS+S  ++YA  +F  + +P    WN+MIRG+++S +PL   A+  
Sbjct: 428 HNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVF 487

Query: 131 YSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           Y+ M   S  +PDT+T+ FLLKA  +  +     + H   IR G++  V +  +L+  YA
Sbjct: 488 YNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYA 547

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
             G ++ A KVFE M  RDLV+WNS+I+ +   G   EAL ++ +M    V  DG+T+VS
Sbjct: 548 GNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVS 607

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           L S+CA +GAL +G + H +  +  L +N+ V NAL+D Y+KCG + +A  +F  M KR+
Sbjct: 608 LLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRD 667

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
             +W++++VG  V+G G EA+  F  M + G  P  +TF+G+L  CSH G+V EG  YF 
Sbjct: 668 VFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFH 727

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  E+ + P I+H+GCMVDL GRAG +K+A E I++     + V+WRTLLG+C IH + 
Sbjct: 728 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNV 787

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            I E+A   L+QL    +GD VLLS +YA  +    V  +R+ +    +K TPG S +E+
Sbjct: 788 EIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEV 847

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK----EDAL 545
           G++V  F + D+SHP + EI+  L E+  +  L GY     ++ A  E   +    E + 
Sbjct: 848 GDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETST 907

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
           SYHSEK+AIA+ L  T  GT + +VKNLRVC DCH   K +SK + REI+VRDR RFHHF
Sbjct: 908 SYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHF 967

Query: 606 KDGHCSCRDYW 616
           + GHCSC+++W
Sbjct: 968 RGGHCSCKEFW 978


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/521 (43%), Positives = 323/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + NI TWN MI G  +      A+ L+ +M+  G  PD  T   +L+  + 
Sbjct: 147 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 206

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G++ H+  ++ GFE    V +SL HMY   G + D  K+ + M  R +VAWN++
Sbjct: 207 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 266

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P E L  +  M   G  PD  T VS+ SAC+EL  L  G++ H  V K G 
Sbjct: 267 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 326

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  + V ++L+  YS+ G +  + + F +    + V WS+++     +G G+EALELF +
Sbjct: 327 SSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQ 386

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME       EVTF+ +LYACSH G+ ++G  YF  M  +Y + P+IEH+ C+VDLLGRAG
Sbjct: 387 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAG 446

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A   I++M + P+ +IW+TLL AC +H  + +AE     +++L+P  +  YVLLSN
Sbjct: 447 RLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSN 506

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A  + WLNV ++R+ M    V+K PG S +EL N V +F MGD+SHPQ  EI   L E
Sbjct: 507 IHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKE 566

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +LK  GYVP   +V  D++ EEKE  L++HSEK AIAF L+NT+   P+RV+KNLRV
Sbjct: 567 LMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRV 626

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK IS++ +REI+VRD SRFHHFKDG CSC +YW
Sbjct: 627 CDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 163/359 (45%), Gaps = 44/359 (12%)

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
            S I  D   +  LL++  KL  +  G+Q HS+ I +G     F+ N L++ Y+  G  K
Sbjct: 55  TSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFK 114

Query: 196 D-------------------------------ACKVFELMSERDLVAWNSVINGFASNGK 224
                                           A K+F+ MSER++  WN++I G      
Sbjct: 115 SSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEF 174

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             +AL+LF+EM   G  PD +T+ S+   CA L +L  G+  H  + K G   +  V ++
Sbjct: 175 NKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSS 234

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L   Y K G +   +++ + M  R  V+W+TL+ G A NG  +E L  +  M++ GF P 
Sbjct: 235 LAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPD 294

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK---QAY 401
           ++TFV VL ACS    + +G      +  + G    +     ++ +  R+G ++   +A+
Sbjct: 295 KITFVSVLSACSELATLGQGQQIHAEVI-KAGASSVLAVVSSLISMYSRSGCLEDSIKAF 353

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE--PKHSGDYVLLSNLYA 458
              +N     + V+W +++ A   HG     E A     Q+E     + +   LS LYA
Sbjct: 354 VDRENF----DVVLWSSMIAAYGFHGR---GEEALELFHQMEDLKMEANEVTFLSLLYA 405


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/604 (39%), Positives = 361/604 (59%), Gaps = 8/604 (1%)

Query: 20  PCRVKSLYHSTPASQENPITSVV----RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNN 75
           P  ++SL  S      NP  +      ++C+ LL+ C ++  + KQVHA  I+  +  ++
Sbjct: 5   PTILQSLLASRDDFTHNPEVNNCGGKEQECLYLLKRC-NNIDEFKQVHARFIKLSLFCSS 63

Query: 76  PDLGKYLIYAIVSLSF--PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
                 ++       +   M+YA +IF  + DP  F + TMIRGY    +  +A+  Y++
Sbjct: 64  SFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNE 123

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   GI+PD  TYP LLKA ++L  +R G+Q H    + G E+ VFVQNSL++MY   G 
Sbjct: 124 MMERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGE 183

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFS 252
           ++ +  VFE +  +   +W+S+ +     G  +E L LFREM  E  ++ +   MVS  S
Sbjct: 184 MELSSTVFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALS 243

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           ACA  GAL LG   H ++ +     N+ V  +L+D Y KCG I  A  +F++M KRN ++
Sbjct: 244 ACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLT 303

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           +S ++ G A++G G+ AL +F EM   G  P  V +V +L ACSH G+V EG   F  M 
Sbjct: 304 YSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEML 363

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            E  + P  EH+GC+VDLLGRAGL+++A E IQ++ +  N V+WR+ L  C +H +  + 
Sbjct: 364 KEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELG 423

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           +IA   LL+L   + GDY+L+SN+Y+    W +V   R  +  + +K+TPG S V++  +
Sbjct: 424 QIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGK 483

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
              F   DRSHPQ +EI+ ML ++  +LK EGY P    +  +++EEEK++ L  HS+K+
Sbjct: 484 THRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKV 543

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AIAF L+ T PG+ +++ +NLR+C+DCH   K IS +Y REIVVRDR+RFH FK G CSC
Sbjct: 544 AIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSC 603

Query: 613 RDYW 616
           +DYW
Sbjct: 604 KDYW 607


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/563 (41%), Positives = 355/563 (63%), Gaps = 8/563 (1%)

Query: 59  LKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           L+Q+HA  + H  P+++    + K L +A +S      YA  IFS + +P IF +N++IR
Sbjct: 4   LRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIR 63

Query: 117 GYAESANPLL-AVELYSKMHVSGI-KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           G   +  P    + L+  M   G   P+T T  F+LKA S +  +  G+Q H+  +R+GF
Sbjct: 64  GCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGF 123

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            S  +VQ+SLV+ Y+    +  A KVF+ ++ER+LV W+++++G+A  G  NEAL +FRE
Sbjct: 124 SSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFRE 183

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   G+EPD  ++V + SACA +GAL +G+  H Y+ K  +  ++ +N AL++ Y+KCG 
Sbjct: 184 MQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGC 243

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A+ +F EMR +++ +WS+++VGLA++G  ++AL +F  ME     P  VTF+G+L A
Sbjct: 244 IEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSA 303

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNA 413
           C+H G+V +G  Y+  M  E GI P +EH+GCMVDLL R GL+ +AY++   +++P P+ 
Sbjct: 304 CAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDF--ALIIPTPDP 360

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
           VIWRTLL A T +     AE+    LL+LEP  + +Y++L+NLYA   +   V  VR+ M
Sbjct: 361 VIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMM 420

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
            +  +K  PG + +E+   V  F  GD SHP+ EEI   L ++  K+ + GY P    V 
Sbjct: 421 KENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVL 480

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
             + +EEKE+ L  HSE++AIA+ L+ T     +R+VKNLRVC DCH   K+ISK+Y RE
Sbjct: 481 HLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDRE 540

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRDR RFH F +G CSC+DYW
Sbjct: 541 IIVRDRVRFHKFVNGTCSCKDYW 563


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 352/581 (60%), Gaps = 15/581 (2%)

Query: 40  SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYA 96
           S++R C +L      +    +Q+H   I+ G   N      Y+   ++ +      +  A
Sbjct: 420 SILRTCTSL-----GALDLGEQIHTQVIKSGFQFN-----VYVCSVLIDMYAKHGELDTA 469

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             I   +++ ++ +W  MI GY +      A++L+ +M   GI+ D   +   + A + +
Sbjct: 470 RGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGI 529

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             +  G+Q H+ +  +G+   + + N+LV +YA  G  +DA   FE +  +D ++WN++I
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +GFA +G   EAL +F +M   GVE + +T  S  SA A    +  G++ H  + K G  
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD 649

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
                +N L+  YSKCG I  A+R F EM ++N VSW+ ++ G + +G+G EA+ LF+EM
Sbjct: 650 SETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEM 709

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           +  G +P  VTFVGVL ACSH G+V+EG SYF+ M  E+G++PK EH+ C+VDLLGRA L
Sbjct: 710 KQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAAL 769

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +  A E+I+ M + P+A+IWRTLL ACT+H +  I E A   LL+LEP+ S  YVLLSN+
Sbjct: 770 LCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNM 829

Query: 457 YAYEQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           YA   +W + ++  R M+K+R VKK PG S +E+ N +  FF+GDR HP  E+I+  + +
Sbjct: 830 YAVSGKW-DYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDD 888

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++    GYV    N+  D+E+E+K+     HSEK+A+AF L++     P+RV+KNLRV
Sbjct: 889 LNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRV 948

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  IK +SK+ +R IVVRD  RFHHF+ G CSC+DYW
Sbjct: 949 CNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 210/411 (51%), Gaps = 15/411 (3%)

Query: 45  CIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           C+T   LL  CAS  + +K KQ+H++ I+ G+  +    G  L   +    F +  AH  
Sbjct: 314 CVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKC--FDIETAHEY 371

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F   +  N+  WN M+  Y +  N   +  ++ +M + G+ P+ +TYP +L+  + L  +
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +GEQ H+  I++GF+  V+V + L+ MYA  G +  A  + + + E D+V+W ++I G+
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY 491

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             +    EAL LF+EM ++G+  D     S  SACA + AL  G++ H   +  G S+++
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           ++ NAL+  Y++CG    A   F ++  ++ +SW+ L+ G A +G  +EAL++F +M   
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G      TF   + A ++   + +G      M  + G   + E    ++ L  + G ++ 
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQG-KQIHAMMIKTGYDSETEASNVLITLYSKCGSIED 670

Query: 400 A-YEYIQNMLMP-PNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           A  E+ +   MP  N V W  ++   + HG+   A++       L L P H
Sbjct: 671 AKREFFE---MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 718



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 219/433 (50%), Gaps = 23/433 (5%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPD-LGKYLIYAIVSLS 90
           +E  I + V+  + L + C +S   L  K++HA   + G   +  D LG  LI  I    
Sbjct: 2   EERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSG--FDGEDVLGSRLI-DIYLAH 58

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             +  A  +F  +   N+  WN +I G          + L+S M    + PD  T+  +L
Sbjct: 59  GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 151 KAIS-KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           +A S   A  ++ EQ H+  I +GF S   V N L+ +Y+  GHV  A  VFE +  +D 
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+W ++I+G + NG+ +EA+ LF +M    V P  Y   S+ SAC ++    LG + H +
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + K GLS    V NAL+  YS+ G +IAA+++F +M +R+ +S+++L+ GLA  GF   A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGC 386
           L+LF++M++    P  VT   +L AC+  G   +G    SY  +M    G+   +   G 
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKM----GMSSDLIIEGS 354

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           ++DL  +   ++ A+EY        N V+W  +L A     +  +  ++ S  + L+ + 
Sbjct: 355 LLDLYVKCFDIETAHEYFLTT-ETENVVLWNVMLVA-----YGQLGNLSESYWIFLQMQI 408

Query: 447 SGDYVLLSNLYAY 459
            G   L+ N Y Y
Sbjct: 409 EG---LMPNQYTY 418



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 195/387 (50%), Gaps = 15/387 (3%)

Query: 47  TLLQVCASSKHKLK---QVHAFSIRHGV---PL-NNPDLGKYLIYAIVSLSFPMSYAHNI 99
           ++L+ C+  K   +   Q+HA  I HG    PL  NP +  Y     V L      A  +
Sbjct: 116 SVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDL------AKLV 169

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   +  +W  MI G +++     A+ L+ +MH S + P  + +  +L A +K+   
Sbjct: 170 FERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELF 229

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           ++GEQ H   ++ G  S  FV N+LV +Y+ +G++  A ++F  M  RD +++NS+I+G 
Sbjct: 230 KLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGL 289

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G  + AL LF +M  + ++PD  T+ SL SACA +GA   G++ H+YV K+G+S ++
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +  +LLD Y KC  I  A   F      N V W+ ++V     G   E+  +F +M+I 
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G +P + T+  +L  C+  G +D G     ++    G    +     ++D+  + G +  
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDT 468

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIH 426
           A   +Q  L   + V W  ++   T H
Sbjct: 469 ARGILQR-LREEDVVSWTAMIAGYTQH 494



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 181/377 (48%), Gaps = 20/377 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H F ++ G+         ++  A+V+L      +  A  IFS +   +  ++N++I 
Sbjct: 233 EQLHGFIVKWGLSSET-----FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLIS 287

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G A+      A++L+ KM +  +KPD  T   LL A + +     G+Q HS  I+ G  S
Sbjct: 288 GLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSS 347

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + ++ SL+ +Y     ++ A + F      ++V WN ++  +   G  +E+  +F +M 
Sbjct: 348 DLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQ 407

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG+ P+ YT  S+   C  LGAL LG + HT V K G   NV V + L+D Y+K G + 
Sbjct: 408 IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+ + + +R+ + VSW+ ++ G   +    EAL+LF+EME  G     + F   + AC+
Sbjct: 468 TARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA 527

Query: 357 HCGMVDEG-----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
               +++G      SY     ++  I         +V L  R G  + AY   + +    
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIG------NALVSLYARCGRAQDAYLAFEKIDAKD 581

Query: 412 NAVIWRTLLGACTIHGH 428
           N + W  L+      GH
Sbjct: 582 N-ISWNALISGFAQSGH 597



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 42/352 (11%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   GI+ +  TY +L +       +   ++ H+   ++GF+    + + L+ +Y A G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V +A K+F+ +   ++  WN VI+G  +    ++ L LF  M +E V PD  T  S+  A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 254 CAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           C+   A   +  + H  +   G   +  V N L+D YSK G +  A+ VF  +  +++VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-------------- 358
           W  ++ GL+ NG   EA+ LF +M     +P    F  VL AC+                
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 359 --GMVDEGF--SYFKRMKDEYGIMPKIEH------------FGCMVDLLGRAGLVKQAYE 402
             G+  E F  +    +   +G +   E             +  ++  L + G   +A +
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 403 YIQNM---LMPPNAVIWRTLLGACTIHG--------HSAIAEIARSTLLQLE 443
             + M    M P+ V   +LL AC   G        HS + ++  S+ L +E
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIE 352


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/567 (41%), Positives = 348/567 (61%), Gaps = 44/567 (7%)

Query: 93  MSYAHNIFSHVQDPNI--FTWNTMIRGYA---ESANPLLAVELYSKMHVSGIKPDTHTYP 147
           ++YA+ IF H++   +  F WN +IR       S      + +Y +M    + PD HT+P
Sbjct: 8   IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK------------ 195
           FLL +      + +G++TH+  +  G +   FV+ SL++MY++ G ++            
Sbjct: 67  FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK 126

Query: 196 -------------------DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
                              DA K+F+ M ER++++W+ +ING+   GK  EAL LFREM 
Sbjct: 127 DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 186

Query: 237 -----SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
                   V P+ +TM ++ SAC  LGAL  G+  H Y+ K  +  ++ +  AL+D Y+K
Sbjct: 187 LPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAK 246

Query: 292 CGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFV 349
           CG +  A+RVF  +  K++  ++S ++  LA+ G   E  +LF EM     + P  VTFV
Sbjct: 247 CGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFV 306

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           G+L AC H G+++EG SYFK M +E+GI P I+H+GCMVDL GR+GL+K+A  +I +M M
Sbjct: 307 GILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPM 366

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+ +IW +LL    + G     E A   L++L+P +SG YVLLSN+YA   RW+ V+ +
Sbjct: 367 EPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCI 426

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R  M  + + K PG S VE+   V EF +GD S  ++E I+AML EI ++L+  GYV  T
Sbjct: 427 RHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDT 486

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
           + V  D+ E++KE ALSYHSEK+AIAF L+ T PGTPVR++KNLR+C DCHL +K+ISK+
Sbjct: 487 KEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL 546

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +SREIVVRD +RFHHF+DG CSCRD+W
Sbjct: 547 FSREIVVRDCNRFHHFRDGSCSCRDFW 573


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/563 (40%), Positives = 339/563 (60%), Gaps = 11/563 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           ++VHA  +  G+  +      Y+  +I+S+ F    +  A  +F  +   ++ +WNTM+ 
Sbjct: 144 RKVHALVVVGGLEED-----VYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMS 198

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G+ ++     A E++  M   G   D  T   LL A   + D+++G++ H   +RNG   
Sbjct: 199 GFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESG 258

Query: 177 LV---FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
            V   F+ NS++ MY     V  A K+FE +  +D+V+WNS+I+G+   G   +AL LF 
Sbjct: 259 RVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFG 318

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M   G  PD  T++S+ +AC ++ AL LG    +YV K G   NV V  AL+  Y+ CG
Sbjct: 319 RMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCG 378

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            ++ A RVF EM ++N  + + +V G  ++G G+EA+ +F EM   G  P E  F  VL 
Sbjct: 379 SLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLS 438

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G+VDEG   F +M  +Y + P+  H+ C+VDLLGRAG + +AY  I+NM + PN 
Sbjct: 439 ACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNE 498

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            +W  LL AC +H +  +A I+   L +L P     YV LSN+YA E+RW +V+ VR  +
Sbjct: 499 DVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALV 558

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
            K R++K P +S VEL   V +FF+GD SH Q+++I+A L ++ ++LK  GY P T  V 
Sbjct: 559 AKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVL 618

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D+EEE KE  L  HSE++A+AF L+NT PGT +R+ KNLRVC DCH  IK+ISK+ +RE
Sbjct: 619 YDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNRE 678

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I++RD  RFHHF+DG CSC  YW
Sbjct: 679 IIMRDICRFHHFRDGLCSCGGYW 701



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 179/319 (56%), Gaps = 6/319 (1%)

Query: 44  KCITLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +C TLLQ   +SK   +  Q+HA     G    N  L   L  A  ++   M YA +IF 
Sbjct: 24  QCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLA-ACYAVCGHMPYAQHIFD 82

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   N F WN+MIRGYA + +P  A+ LY KM   G KPD  TYPF+LKA   L    M
Sbjct: 83  QIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREM 142

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + H++ +  G E  V+V NS++ MY  FG V+ A  VF+ M  RDL +WN++++GF  
Sbjct: 143 GRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVK 202

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN- 280
           NG+   A  +F +M  +G   D  T+++L SAC ++  L +G+  H YV + G S  V  
Sbjct: 203 NGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCN 262

Query: 281 --VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             + N+++D Y  C  +  A+++F  +R ++ VSW++L+ G    G   +ALELF  M +
Sbjct: 263 GFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVV 322

Query: 339 GGFVPGEVTFVGVLYACSH 357
            G VP EVT + VL AC+ 
Sbjct: 323 VGAVPDEVTVISVLAACNQ 341


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/620 (38%), Positives = 370/620 (59%), Gaps = 16/620 (2%)

Query: 1   MTSWLM----HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSK 56
           + +W +    +S+    ++  DL CR   L  S     +  +TS++  C+ L        
Sbjct: 213 LVTWTLMITRYSQLGLLDDAVDLFCR---LLVSEYTPDKFTLTSLLSACVELEFFSLG-- 267

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
              KQ+H++ IR G+  ++  +G  L+  + + S  +  +  IF+ +   N+ +W  +I 
Sbjct: 268 ---KQLHSWVIRSGLA-SDVFVGCTLV-DMYAKSAAVENSRKIFNTMLHHNVMSWTALIS 322

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY +S     A++L+  M    + P+  T+  +LKA + L D  +G+Q H   I+ G  +
Sbjct: 323 GYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLST 382

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V NSL++MYA  G ++ A K F ++ E++L+++N+  +  A     +E+     E+ 
Sbjct: 383 INCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVE 440

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             GV    +T   L S  A +G +  G + H  + K G   N+ +NNAL+  YSKCG   
Sbjct: 441 HTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKE 500

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA +VF +M  RN ++W++++ G A +GF  +ALELF EM   G  P EVT++ VL ACS
Sbjct: 501 AALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACS 560

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G++DE + +F  M   + I P++EH+ CMVDLLGR+GL+ +A E+I +M    +A++W
Sbjct: 561 HVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVW 620

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RT LG+C +H ++ + E A   +L+ EP     Y+LLSNLYA E RW +V  +R++M ++
Sbjct: 621 RTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQK 680

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
           ++ K  G+S +E+ N+V +F +GD SHPQ  +I+  L E+  K+K  GY+P T+ V  D+
Sbjct: 681 KLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDV 740

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           E+E+KE  L  HSEKIA+A+ L++T    P+RV KNLRVC DCH AIK IS V  REIVV
Sbjct: 741 EDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVV 800

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHH KDG CSC DYW
Sbjct: 801 RDANRFHHIKDGKCSCNDYW 820



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 168/334 (50%), Gaps = 25/334 (7%)

Query: 39  TSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL------- 89
           TS + K   LL+ C  S +    K +H   I  G+PL++      L+ ++++L       
Sbjct: 36  TSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDS-----VLLNSLITLYSKCGDW 90

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-----SGIKPDTH 144
              +S   N+  H +D  + +W+ +I  +A   N + +  L + +H+     + I P+ +
Sbjct: 91  ENALSIFRNMGHHKRD--LVSWSAIISCFAN--NSMESRALLTFLHMLQCSRNIIYPNEY 146

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFG-HVKDACKVFE 202
            +  LL++ S       G    +  ++ G F+S V V  +L+ M+   G  ++ A  VF+
Sbjct: 147 CFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFD 206

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M  ++LV W  +I  ++  G  ++A+ LF  +      PD +T+ SL SAC EL   +L
Sbjct: 207 KMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSL 266

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G++ H++V + GL+ +V V   L+D Y+K   +  ++++F  M   N +SW+ L+ G   
Sbjct: 267 GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQ 326

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           +   +EA++LF  M  G   P   TF  VL AC+
Sbjct: 327 SRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/557 (41%), Positives = 341/557 (61%), Gaps = 3/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + +H +S+R G   +  ++   L+  + S    +  A  IF  +    + +WN+MI GY 
Sbjct: 296 RSIHGYSMRAGFE-SFVNVSTALV-DMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYV 353

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++ +P  A+E++ KM    ++    T    L A + L DV  G   H +  +    S V 
Sbjct: 354 QNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS 413

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V NSL+ MY+    V  A ++FE +  + LV+WN++I G+A NG+ NEA+  F +M  + 
Sbjct: 414 VMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN 473

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           ++PD +TMVS+  A AEL  L   +  H  V +  L  NV V  AL+D Y+KCG +  A+
Sbjct: 474 IKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTAR 533

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           ++F  M +R+  +W+ ++ G   +G GK ALELF++M+     P EVTF+ VL ACSH G
Sbjct: 534 KLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EGF YF  MK +YG+ P ++H+G MVDLLGRA  + +A+++IQ M + P   ++  +
Sbjct: 594 LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAM 653

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IH +  + E A + +  L+P   G +VLL+N+YA    W  V  VR TM K+ ++
Sbjct: 654 LGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           KTPG S+VEL N V  F+ G  SHPQ ++I+A L  +  ++K  GY+P T +V  D+E+ 
Sbjct: 714 KTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSVH-DVEDV 772

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE  L+ HSEK+AIAF L+NT+PGT + + KNLRVC DCH A K IS V  REI+VRD 
Sbjct: 773 VKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDM 832

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHFKDG CSC DYW
Sbjct: 833 RRFHHFKDGTCSCGDYW 849



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 8/420 (1%)

Query: 28  HSTPASQENPITSVVR-KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAI 86
           H TP+S+    + V +     LL++C S K +L Q     I++G  L +  L +  + ++
Sbjct: 62  HRTPSSRTYIPSHVYKHPSAILLELCTSMK-ELHQFIPLIIKNG--LYSEHLFQTKLVSL 118

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
                 +  A  +F  ++D     ++TM++GYA +++   AV  + +M   G++P  + +
Sbjct: 119 FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNF 178

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
            +LLK     AD+R G++ H   I NGF S VF    +V+MYA    V++A K+F+ M E
Sbjct: 179 TYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPE 238

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RDLV WN++I+G+A NG    AL L   M  EG  PD  T+VS+  A A++G+L +GR  
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y  + G    VNV+ AL+D YSKCG +  A+ +F  M  +  VSW++++ G   NG  
Sbjct: 299 HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDP 358

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
             A+E+F++M         VT +G L+AC+  G V++G  +  ++ D+  +   +     
Sbjct: 359 GAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNS 417

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEP 444
           ++ +  +   V  A E  +N L     V W  ++     +G  + AI    +  L  ++P
Sbjct: 418 LISMYSKCKRVDIAAEIFEN-LQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKP 476


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 331/521 (63%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +FS ++  +  +WN+MI  Y ++ +   A++L+ KM  + +KPD+ TY  LL   ++
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQ 428

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+ +G++ H    + GF S + V N+LV MYA  G + D+ KVFE M  RD++ WN++
Sbjct: 429 LGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTI 488

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I     +   N  L +   M +EGV PD  TM+S+   C+ L A   G+  H  ++K+GL
Sbjct: 489 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 548

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V N L++ YSKCG +  + +VF+ M+ ++ V+W+ L+    + G GK+A+  F E
Sbjct: 549 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 608

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME  G VP  V FV +++ACSH G+V+EG +YF RMK +Y I P+IEH+ C+VDLL R+ 
Sbjct: 609 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 668

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A ++I +M + P++ IW  LL AC + G + IAE     +++L P  +G YVL+SN
Sbjct: 669 LLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSN 728

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W  V+ +R+++    +KK PG S +E+ N+V+ F  G +   Q EE++ +L  
Sbjct: 729 IYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGM 788

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +   +  EGY+   + V  DI+E+EK D L  HSE++AIAF L+NT PGTP++V+KNLRV
Sbjct: 789 LAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRV 848

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K ISK+  RE++VRD +RFH FKDG CSC DYW
Sbjct: 849 CEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 159/279 (56%), Gaps = 15/279 (5%)

Query: 100 FSHVQDP--------------NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           ++H +DP              N++ WN++IR    +     A+ LYS+     ++PDT+T
Sbjct: 58  YAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +P ++ A + L D  M +  H   +  GF S +++ N+L+ MY  F  +  A KVFE M 
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            RD+V+WNS+I+G+ +NG  NEAL ++    + GV PD YTM S+  AC  LG++  G  
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 237

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  + K+G+  +V VNN LL  Y K   +I  +R+F +M  R+AVSW+T++ G +  G 
Sbjct: 238 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 297

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            +E+++LF EM +  F P  +T   +L AC H G ++ G
Sbjct: 298 YEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFG 335



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 198/403 (49%), Gaps = 15/403 (3%)

Query: 25  SLYHSTPASQENPIT----SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
           SLY  T   +  P T    SV+  C  LL          K +H   +  G   ++  +G 
Sbjct: 101 SLYSETQRIRLQPDTYTFPSVINACAGLLDF-----EMAKSIHDRVLDMGFG-SDLYIGN 154

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
            LI      +  +  A  +F  +   ++ +WN++I GY  +     A+E+Y +    G+ 
Sbjct: 155 ALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD++T   +L+A   L  V  G+  H +  + G +  V V N L+ MY  F  + D  ++
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 273

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ M  RD V+WN++I G++  G   E++ LF EM ++  +PD  T+ S+  AC  LG L
Sbjct: 274 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDL 332

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             G+  H Y+   G   +   +N L++ Y+KCG ++A+Q VF  M+ +++VSW++++   
Sbjct: 333 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 392

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
             NG   EA++LFK M+     P  VT+V +L   +  G +  G      +  + G    
Sbjct: 393 IQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLA-KMGFNSN 450

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           I     +VD+  + G +  + +  +NM    + + W T++ +C
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENM-KARDIITWNTIIASC 492


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/583 (43%), Positives = 355/583 (60%), Gaps = 25/583 (4%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV---SLSFPMSYAHNI 99
           R+ +  L  C +   +LKQ+HA +IR     ++P+   + +Y+ +   S    + YA  +
Sbjct: 27  RRLLLFLNSC-TCISQLKQLHAQTIR-TTSSHHPN--TFFLYSRILHFSSLHDLRYAFRV 82

Query: 100 FSHVQDPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLA 157
           F  +++PN F WN +IR  A S +    A+ LY +M   G +  D HT+PF+LKA + L 
Sbjct: 83  FHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLF 142

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  GEQ H+  ++ GF+S V++ NSLVH YA    +  A  VF+ MSER LV+WN VI+
Sbjct: 143 ALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVID 202

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            F   G+ + AL LF EM  +  EPDGYT+ S+ +ACA +G+L+LG           + +
Sbjct: 203 AFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLG-----------IVN 250

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM- 336
           +V +N +L+D Y KCG +  A ++F  M KR+  SW+++++G + +G    ALE F  M 
Sbjct: 251 DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMV 310

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                +P  +TFVGVL AC+H G+V EG  YF  M  EY I P++EH+GC+VDLL RAGL
Sbjct: 311 RTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGL 370

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           + +A + + NM M P+ VIWR+LL AC     G     E+AR  L       SG YVLLS
Sbjct: 371 IDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLS 430

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
            +YA   RW +V  VR+ M  + V K PG S +E+     EFF GD SHPQTEEI++ L 
Sbjct: 431 RVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALD 490

Query: 515 EITKKLKLEGYVPRTENV-FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            I ++++  GY P +      D   + K+ +L  HSE++AIAF L+ T PG P+R+ KNL
Sbjct: 491 VIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNL 550

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC +CH   KLIS+V++REI+VRDR RFHHFKDG CSC DYW
Sbjct: 551 RVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/523 (42%), Positives = 332/523 (63%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +   + + N+ +W  MI GY++      A+ L+ +M +SG  P+  T+  +L + + 
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            +  ++G Q HS+ I+  FES +FV +SL+ MYA  G + +A +VF+ + ERD+V+  ++
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 183

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR +  EG+  +  T  S+ +A + L AL  GR+ H++V +  L
Sbjct: 184 ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 243

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG +  ++R+F  M +R  +SW+ ++VG + +G G+EA+ELFK 
Sbjct: 244 PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 303

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIMPKIEHFGCMVDLLGR 393
           M E     P  VTF+ VL  CSH GM D G   F  M ++  G  P+IEH+GC+VDL GR
Sbjct: 304 MKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 363

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG V++A+E+I+ M   P A IW +LLGAC +H +  I E     LL++E +++G+YV+L
Sbjct: 364 AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVIL 423

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   RW +V+ VR  M ++ V K PG S +EL   +  F   DRSHP+ EE+ A +
Sbjct: 424 SNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKV 483

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E++ K+K  GYVP    V  D+++E+KE  L  HSEK+A+AF L+ T  GTPVR++KNL
Sbjct: 484 RELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNL 543

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K +S+VY RE+ +RD++RFHH   G CSC DYW
Sbjct: 544 RICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 154/298 (51%), Gaps = 10/298 (3%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G++ +   Y  +L        +R G++ H+  I+  +E  V+++  L+ +Y     
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           + DA +V + M ER++V+W ++I+G++  G  +EAL LF EM   G  P+ +T  ++ ++
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C       LGR+ H+ V K     ++ V ++LLD Y+K G I  A+RVF  + +R+ VS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
           + ++ G A  G  +EAL+LF+ ++  G     VT+  VL A S    +D G    S+  R
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
            K  + ++ +      ++D+  + G +  +     +  MP   VI W  +L   + HG
Sbjct: 241 AKLPFYVVLQ----NSLIDMYSKCGSLTYSRRIFDS--MPERTVISWNAMLVGYSKHG 292



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 15/181 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +T L   A+  H  +QVH+  +R  +P    L N  +  Y      S    ++Y+  IF 
Sbjct: 219 LTALSGLAALDHG-RQVHSHVLRAKLPFYVVLQNSLIDMY------SKCGSLTYSRRIFD 271

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS--KLAD 158
            + +  + +WN M+ GY++      AVEL+  M   + +KPD+ T+  +L   S   + D
Sbjct: 272 SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMED 331

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVIN 217
             +      V  ++GFE  +     +V ++   G V++A +  + M  E     W S++ 
Sbjct: 332 RGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLG 391

Query: 218 G 218
            
Sbjct: 392 A 392


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/610 (39%), Positives = 337/610 (55%), Gaps = 70/610 (11%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           NP LG  L+ +  +   P      +F  + D N+  +N MIR Y  +      + ++ +M
Sbjct: 52  NPSLGIKLMRSYAACGEP-GLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREM 110

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN------------ 182
              G +PD +TYP +LKA S   ++R G   H   ++ G +  +FV N            
Sbjct: 111 VNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCL 170

Query: 183 -------------------SLVHMYA----------------AFGHVKDAC--------- 198
                              S+V  YA                 +G   D C         
Sbjct: 171 FEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAV 230

Query: 199 ------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
                       K+F  +  ++L++WN +I  +  N  P +A+ L+ +M    VEPD  T
Sbjct: 231 ANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAIT 290

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  AC +L AL LGRR H YV K  L  N+ + N+L+D Y++CG +  A+RVF  M+
Sbjct: 291 FASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMK 350

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            R+  SW++L+    + G G  A+ LF EM   G  P  + FV +L ACSH G++DEG  
Sbjct: 351 FRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRI 410

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           YFK+M D+Y I P+IEH+ C+VDLLGRAG V +AY  I+ M + PN  +W TLL +C + 
Sbjct: 411 YFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVF 470

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
            +  I  +A   LLQL P+ SG YVLLSN+YA   RW  V E+R  M +++++KTPG S 
Sbjct: 471 TNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISN 530

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           VEL N+V  F  GD SHPQ++EI+  L  +  K+K  GYVP T++   D+EEE+KE  L+
Sbjct: 531 VELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLA 590

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
            HSEK+AI F L+NT     +R+ KNLRVC DCH+A KLISK+  REI+VRD +RFHHFK
Sbjct: 591 VHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFK 649

Query: 607 DGHCSCRDYW 616
           DG CSC DYW
Sbjct: 650 DGVCSCGDYW 659



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 34/296 (11%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS---------LVHMYAAFGHVK 195
           ++  L KA+ +  D++  ++ H+         ++F  NS         L+  YAA G   
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHT---------MIFYLNSHQNPSLGIKLMRSYAACGEPG 70

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
              KVF+ MS+R++V +N +I  + +N + ++ L +FREM + G  PD YT   +  AC+
Sbjct: 71  LTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACS 130

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
               L  G   H  V KVGL  N+ V N L+  Y KCG +  A+RVF EM  ++ VSW++
Sbjct: 131 CSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNS 190

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG-----MVDEGFSYFKR 370
           +V G A N    +ALE+ +EME  G  P   T   ++ A ++        V++ F   +R
Sbjct: 191 MVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLER 250

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGAC 423
                     +  +  M+ +  +  L  QA   Y  ++   + P+A+ + ++L AC
Sbjct: 251 --------KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/498 (42%), Positives = 322/498 (64%), Gaps = 2/498 (0%)

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S++P     +Y +M   G++ D  +  F+++   ++  +  GEQ H+  + +G +S   +
Sbjct: 2   SSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLL 61

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-- 238
             +L+ +Y+      +ACKVF+ M +RD +AWN +I+ +  N +  + L +F  M S   
Sbjct: 62  LTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGEL 121

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G EPD  T + L  ACA LGAL  G + H ++ + G  +  N+ N+L+  YS+ G +  A
Sbjct: 122 GCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKA 181

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VF+ M  +N V+WS ++ GLA+NG+G+EA+  F+EM   G +P ++TF GVL ACS+C
Sbjct: 182 FGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNC 241

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+VD+G   F RM  E+GI+P I H+GCMVDLLGRAG + QAY+ I +M + P++ IWRT
Sbjct: 242 GLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRT 301

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGAC IH +  + E     L++L+ + +GDYVLL NLY+    W  V E+R+ M ++ +
Sbjct: 302 LLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGI 361

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           + TP  S +EL  +V EF + D SHPQ +EI+ ML EI+K+LK+ GYV    +   +++ 
Sbjct: 362 QTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDA 421

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK   LSYHSEK+AIAF ++ T PGT +R+ KNLR+C DCH   K++S VY+R++++ D
Sbjct: 422 EEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITD 481

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFHHF+ GHCSC DYW
Sbjct: 482 HTRFHHFRGGHCSCNDYW 499



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 45  CITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           C+ LLQ CA+  +    ++VH   +  G   N  +L   LI A+ S    +  A  +F  
Sbjct: 130 CLLLLQACANLGALEFGEKVHGHIVERGYD-NATNLCNSLI-AMYSQFGNLDKAFGVFKG 187

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + + N+ TW+ +I G A +     A+  + +M   G+ PD  T+  +L A S    V  G
Sbjct: 188 MHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKG 247


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 350/572 (61%), Gaps = 18/572 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++++G    N  +G  L+    +    +S    +F  + D  I  WN MI GYA
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS-GCRVFDGMFDRKIGLWNAMITGYA 376

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++     A+ L+ +M  S G+  ++ T   ++ A  +       E  H   ++ G +   
Sbjct: 377 QNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDR 436

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--- 235
           FVQN+L+ MY+  G +  A ++F  M +RDLV WN++I G+  + +  +AL +  +M   
Sbjct: 437 FVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQIL 496

Query: 236 ---ASE-----GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
              ASE      ++P+  T++++  +CA L ALA G+  H Y  K  L+ +V V +AL+D
Sbjct: 497 ERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 556

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG +  +++VF ++  RN ++W+ +V+   ++G  ++A+++ + M + G  P EVT
Sbjct: 557 MYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVT 616

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           F+ V  ACSH GMV+EG   F  MK +YG+ P  +H+ C+VDLLGRAG VK+AY+ I   
Sbjct: 617 FISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN-- 674

Query: 408 LMPPN---AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           L+P N   A  W +LLGAC IH +  I EIA   L+QLEP  +  YVLL+N+Y+    W 
Sbjct: 675 LIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWY 734

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
              EVRR M  + V+K PG S +E G+ V +F  GD SHPQ+E++   L  + ++++ EG
Sbjct: 735 KATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEG 794

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y+P T  V  ++EE+EKE  L  HSEK+AIAF ++NT+PGT +RV KNLRVC DCHLA K
Sbjct: 795 YIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 854

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISKV  REI++RD  RFHHFK+G CSC DYW
Sbjct: 855 FISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA   + G  +++  +   L+  +          + +F  + + N  +WN++I    
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLV-NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 171

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRNGFES 176
                 +A+E +  M    ++P + T   +  A S       + MG+Q H+  +R G E 
Sbjct: 172 SFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-EL 230

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+ N+LV MY   G +  +  +      RDLV WN+V++    N +  EAL   REM 
Sbjct: 231 NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGII 295
            EGVEPDG+T+ S+  AC+ L  L  G+  H Y  K G L +N  V +AL+D Y  C  +
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
           ++  RVF  M  R    W+ ++ G A N + +EAL LF EM E  G +    T  GV+ A
Sbjct: 351 LSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410

Query: 355 CSHCG 359
           C   G
Sbjct: 411 CVRSG 415



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 135/258 (52%), Gaps = 5/258 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           W  ++R    S     AV  Y  M V GIKPD   +P LLKA++ L D+ +G+Q H+   
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 171 RNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           + G+    V V N+LV++Y   G      KVF+ +SER+ V+WNS+I+   S  K   AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELG---ALALGRRAHTYVWKVGLSDNVNVNNALL 286
             FR M  E VEP  +T+VS+  AC+       L +G++ H Y  + G   N  + N L+
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             Y K G + +++ +      R+ V+W+T++  L  N    EALE  +EM + G  P   
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 347 TFVGVLYACSHCGMVDEG 364
           T   VL ACSH  M+  G
Sbjct: 300 TISSVLPACSHLEMLRTG 317


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/539 (42%), Positives = 327/539 (60%), Gaps = 32/539 (5%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSV 168
            WN +I G+        +   +  M  +G  P   TY  +L A  K   DV +G Q H  
Sbjct: 89  AWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGR 148

Query: 169 AIRNGFESLVFVQNSLVHMYAA-------------------------------FGHVKDA 197
            + +G    + V+N+LV MYA                                 G V +A
Sbjct: 149 VVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEA 208

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             +F+ M ERD V+W ++I+G+    +  EAL +FREM    V  D +TMVS+ +ACA+L
Sbjct: 209 RDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQL 268

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           GAL +G     Y+ + G+  +  V NAL+D YSKCG I  A  VF+ M  R+  +W+ ++
Sbjct: 269 GALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAII 328

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           +GLAVNG+ +EA+E+F  M      P EVTF+GVL AC+H G+VD+G  +F  M + Y I
Sbjct: 329 LGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNI 388

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P + H+GC++DLLGRAG + +A + I  M M PN+ IW TLL AC +HG+S I E+   
Sbjct: 389 APNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAE 448

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            LL+L+P++S  Y+LLSN+YA   RW +V+ +R  ++++ +KK PG SL+E+   + EF 
Sbjct: 449 RLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFV 508

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
            GD+SHP ++EI++ L  I   L   GY P    VF ++ E+EK+  L +HSEK+AIAF 
Sbjct: 509 AGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFA 568

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+++ P T +R+VKNLR+C DCH AIKLIS++Y RE+VVRDR+RFHHF+ G CSC+DYW
Sbjct: 569 LLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 45/320 (14%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLA----DVRMGEQTHSVAIRNGFESLVFVQN 182
           AV  Y++M   G +PD +T+P LLKA+++ A            H+  +R G      V +
Sbjct: 3   AVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVAS 62

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDL-VAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           SLV  Y A     D      L+ E D  VAWN++I+G    G+  E+   F +MA  G  
Sbjct: 63  SLVAAYTA---GGDGAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 242 PDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           P   T VS+ SAC +    + LG + H  V   G+  ++ V NAL+D Y++C  + +A +
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179

Query: 301 VFREMRKRNAVSWSTLVVGLA--------------------------VNGFG-----KEA 329
           VF  M+ R+ VSW++L+ GLA                          ++G+      +EA
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREA 239

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--GCM 387
           LE+F+EM+       E T V V+ AC+  G ++ G  + +      GI  K++ F    +
Sbjct: 240 LEMFREMQYSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGI--KMDAFVGNAL 296

Query: 388 VDLLGRAGLVKQAYEYIQNM 407
           +D+  + G +++A +  + M
Sbjct: 297 IDMYSKCGSIERALDVFKGM 316



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  + + +  +W  MI GY  +A    A+E++ +M  S +  D  T   ++ A ++
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  + MGE       R G +   FV N+L+ MY+  G ++ A  VF+ M  RD   W ++
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-TYVWKVG 274
           I G A NG   EA+ +F  M      PD  T + + +AC   G +  GR    + +    
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELF 333
           ++ NV     ++D   + G I  A     +M    N+  W TL+    V+G   E  EL 
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHG-NSEIGELV 446

Query: 334 KE 335
            E
Sbjct: 447 AE 448



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 14/253 (5%)

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAEL----GALALGRRAHTYVWKVGLSDNVNVN 282
           +A+  +  M + G  PD YT  +L  A A      G+ A  R  H +V ++G+  N +V 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           ++L+  Y+  G   AA+ +  E      V+W+ L+ G    G   E+   F +M   G  
Sbjct: 62  SSLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 343 PGEVTFVGVLYACSHCGMVDE--GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
           P  VT+V VL AC   G  D   G     R+    G++P +     +VD+      +  A
Sbjct: 120 PTPVTYVSVLSACGK-GTRDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMGSA 177

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           ++    M +  + V W +LL      G     + AR    ++  + +  +  + + Y + 
Sbjct: 178 WKVFDGMQV-RSVVSWTSLLSGLARLGQ---VDEARDLFDRMPERDTVSWTAMIDGYVWA 233

Query: 461 QRWLNVQEVRRTM 473
            R+    E+ R M
Sbjct: 234 ARFREALEMFREM 246


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/564 (41%), Positives = 347/564 (61%), Gaps = 11/564 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+HA  I+     N  +  K   +A  S S  ++YA  + +     N + +NT+IR Y+ 
Sbjct: 6   QLHAQFIK---SQNQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSH 62

Query: 121 SANP---LLAVELYSKM---HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           ++NP     A+ L+  M   H +  KPDT TY F LK+  +L   +  +Q H    + GF
Sbjct: 63  TSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGF 122

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
              +++QN+L+HMY+  G +  A +VF+ MS RD+V+W S+I GF ++    EA+ LF+ 
Sbjct: 123 GFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQR 182

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   GV+ +  T++S+   CA+ GAL++GR+ H  V + G+    NV  AL+  YSKCG 
Sbjct: 183 MLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGC 242

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + +A+ VF ++  R+   W+ ++ GLA +G  KEA+ELF EME     P E T + VL A
Sbjct: 243 LESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSA 302

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
             + G+V EG+ +F  ++  Y + P I+HFGCMVDLL + G +++A ++I  M M P+AV
Sbjct: 303 YRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAV 362

Query: 415 IWRTLLGACTIHGHSAIAE-IARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRT 472
           IWRTL+ AC +H  +  AE + +   LQ    H SG Y+L SN+YA   +W +  EVR  
Sbjct: 363 IWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVREL 422

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M K+ + K PG S +E+   V EF MGD  HP TE+I   L ++  KL+ EGY P+   V
Sbjct: 423 MNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEV 482

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             ++++EEK   L +HSEK+A+A+ L+ T PG+ +R+VKNLR C DCH  +KLISKVY R
Sbjct: 483 MLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQR 542

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           +I+VRDR RFHHFK+G CSC+DYW
Sbjct: 543 DIIVRDRIRFHHFKNGDCSCKDYW 566


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 370/663 (55%), Gaps = 59/663 (8%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           H K  +     DL  ++  + H  P ++ + I S+V     +L  C S K   + K+VH 
Sbjct: 89  HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV----NILPACGSLKAVPQTKEVHG 144

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
            +IR+G  L+   +G  LI A       M  A  +F+ ++  ++ +WN M+ GY++S N 
Sbjct: 145 NAIRNGTFLD-VFVGNALIDAYAKCGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 202

Query: 125 LLAVELYSKMH-----------------------------------VSGIKPDTHTYPFL 149
             A EL+  M                                     SG  P+  T   +
Sbjct: 203 KAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISV 262

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESL----------VFVQNSLVHMYAAFGHVKDACK 199
           L A + L     G + H+ +++N   +L          + V N+L+ MY+     K A  
Sbjct: 263 LSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARS 322

Query: 200 VFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSACA 255
           +F+   + ER++V W  +I G A  G  N+AL LF EM SE  GV P+ YT+  +  ACA
Sbjct: 323 IFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACA 382

Query: 256 ELGALALGRRAHTYVWKVGLSDNVN--VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
            L A+ +G++ H YV +    D+    V N L++ YSKCG +  A+ VF  M +++A+SW
Sbjct: 383 HLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISW 442

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++++ G  ++G G EAL++F +M   GFVP ++TF+ VLYACSHCGMVD+G SYF  M  
Sbjct: 443 TSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSA 502

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +YG+ P+ EH+   +DLL R G + +A++ +++M M P AV+W  LL AC +H +  +AE
Sbjct: 503 DYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAE 562

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
            A + L+++  ++ G Y L+SN+YA   RW +V  +R  M K  +KK PG S V+     
Sbjct: 563 HALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGT 622

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
             FF+GDRSHP + +I+A+L  +  ++K  GYVP T     D++EEEK + L  HSEK+A
Sbjct: 623 ASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLA 682

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +A+ L+ T PG P+R+ KNLRVC DCH A   ISK+   EIVVRD SRFHHFK+G CSC 
Sbjct: 683 LAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCG 742

Query: 614 DYW 616
            YW
Sbjct: 743 GYW 745



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 184/384 (47%), Gaps = 61/384 (15%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHV------SGIKPDTHTYPFLLKAISKLADVR 160
           ++ +WN+++  + +S+N   A++L+SKM +      +  + D  +   +L A   L  V 
Sbjct: 78  DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN------- 213
             ++ H  AIRNG    VFV N+L+  YA  G +++A KVF +M  +D+V+WN       
Sbjct: 138 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 197

Query: 214 ----------------------------SVINGFASNGKPNEALTLFREMASEGVEPDGY 245
                                       +VI G++  G  +EAL +FR+M   G  P+  
Sbjct: 198 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 257

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKV----------GLSDNVNVNNALLDFYSKCGII 295
           T++S+ SACA LGA + G   H Y  K           G  +++ V NAL+D YSKC   
Sbjct: 258 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 317

Query: 296 IAAQRVFRE--MRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVTFVGV 351
            AA+ +F +  + +RN V+W+ ++ G A  G   +AL+LF EM  E  G  P   T   +
Sbjct: 318 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 377

Query: 352 LYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           L AC+H   +  G    +Y  R          + +  C++++  + G V  A  ++ + +
Sbjct: 378 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN--CLINMYSKCGDVDTA-RHVFDSM 434

Query: 409 MPPNAVIWRTLLGACTIHGHSAIA 432
              +A+ W +++    +HG  + A
Sbjct: 435 SQKSAISWTSMMTGYGMHGRGSEA 458



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 9/244 (3%)

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           +G + D  T P +LKA  +L   R G   H +   NGFES VF+ N+LV MY+  G +++
Sbjct: 4   AGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 63

Query: 197 ACKVFELMSER---DLVAWNSVINGFASNGKPNEALTLFREMA------SEGVEPDGYTM 247
           A  +F+ +++R   D+++WNS+++    +     AL LF +M             D  ++
Sbjct: 64  ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 123

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           V++  AC  L A+   +  H    + G   +V V NAL+D Y+KCG++  A +VF  M  
Sbjct: 124 VNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF 183

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           ++ VSW+ +V G + +G  K A ELFK M         VT+  V+   S  G   E  + 
Sbjct: 184 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 243

Query: 368 FKRM 371
           F++M
Sbjct: 244 FRQM 247



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 52/242 (21%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   G   D +T+  +  AC EL +   G   H  +   G   NV + NAL+  YS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 295 IIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEM--------------- 336
           +  A  +F E+ +R   + +SW+++V     +     AL+LF +M               
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 337 --------------------EIGGFVPGEVTFVGVLY------ACSHCGMVDEGFSYFKR 370
                               E+ G      TF+ V        A + CG+++     F  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
           M+        +  +  MV    ++G  K A+E  +NM    +P + V W  ++   +  G
Sbjct: 181 ME-----FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG 235

Query: 428 HS 429
            S
Sbjct: 236 CS 237


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/523 (42%), Positives = 332/523 (63%), Gaps = 2/523 (0%)

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            A  +   + + N+ +W  MI GY++      A+ L+ +M +SG  P+  T+  +L + + 
Sbjct: 531  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 590

Query: 156  LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             +  ++G Q HS+ I+  FES +FV +SL+ MYA  G + +A +VF+ + ERD+V+  ++
Sbjct: 591  SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 650

Query: 216  INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            I+G+A  G   EAL LFR +  EG+  +  T  S+ +A + L AL  GR+ H++V +  L
Sbjct: 651  ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 710

Query: 276  SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
               V + N+L+D YSKCG +  ++R+F  M +R  +SW+ ++VG + +G G+EA+ELFK 
Sbjct: 711  PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 770

Query: 336  M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIMPKIEHFGCMVDLLGR 393
            M E     P  VTF+ VL  CSH GM D G   F  M ++  G  P+IEH+GC+VDL GR
Sbjct: 771  MKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 830

Query: 394  AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            AG V++A+E+I+ M   P A IW +LLGAC +H +  I E     LL++E +++G+YV+L
Sbjct: 831  AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVIL 890

Query: 454  SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
            SNLYA   RW +V+ VR  M ++ V K PG S +EL   +  F   DRSHP+ EE+ A +
Sbjct: 891  SNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKV 950

Query: 514  AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             E++ K+K  GYVP    V  D+++E+KE  L  HSEK+A+AF L+ T  GTPVR++KNL
Sbjct: 951  RELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNL 1010

Query: 574  RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            R+C DCH   K +S+VY RE+ +RD++RFHH   G CSC DYW
Sbjct: 1011 RICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 179/367 (48%), Gaps = 22/367 (5%)

Query: 73  LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAV---- 128
            N   + + +I+ I SL F       + S + +P  F+   ++     + +P L      
Sbjct: 403 FNQLSVEEKMIWKITSLIF--HRPKQVLSSISNP--FSRQRILLSTFPANSPDLKTLCSN 458

Query: 129 ----ELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSL 184
               E   +M + G++ +   Y  +L        +R G++ H+  I+  +E  V+++  L
Sbjct: 459 RQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRL 518

Query: 185 VHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
           + +Y     + DA +V + M ER++V+W ++I+G++  G  +EAL LF EM   G  P+ 
Sbjct: 519 IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 578

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           +T  ++ ++C       LGR+ H+ V K     ++ V ++LLD Y+K G I  A+RVF  
Sbjct: 579 FTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDG 638

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + +R+ VS + ++ G A  G  +EAL+LF+ ++  G     VT+  VL A S    +D G
Sbjct: 639 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 698

Query: 365 ---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLL 420
               S+  R K  + ++ +      ++D+  + G +  +     +  MP   VI W  +L
Sbjct: 699 RQVHSHVLRAKLPFYVVLQ----NSLIDMYSKCGSLTYSRRIFDS--MPERTVISWNAML 752

Query: 421 GACTIHG 427
              + HG
Sbjct: 753 VGYSKHG 759



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +T L   A+  H  +QVH+  +R  +P    L N  +  Y      S    ++Y+  IF 
Sbjct: 686 LTALSGLAALDHG-RQVHSHVLRAKLPFYVVLQNSLIDMY------SKCGSLTYSRRIFD 738

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS--KLAD 158
            + +  + +WN M+ GY++      AVEL+  M   + +KPD+ T+  +L   S   + D
Sbjct: 739 SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMED 798

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVI 216
             +      V  ++GFE  +     +V ++   G V++A +  + M  E     W S++
Sbjct: 799 RGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 857


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 360/592 (60%), Gaps = 15/592 (2%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQ---VHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           + NP     ++   LL + A+ ++ L     VH   +  G    +P L   LI     L 
Sbjct: 64  ESNP----TQQTCELLILSAARRNSLSDALDVHQLLVDGGFD-QDPFLATKLINMFSELD 118

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             +  A  +F   +   I+ WN + R  A +      +ELY +M++ G+  D  TY +LL
Sbjct: 119 -TVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLL 177

Query: 151 KAISK----LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           KA       ++ ++ G++ H+  +R+G+ + V V  +L+ MYA FG V  A  VF+ M  
Sbjct: 178 KACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPV 237

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMA--SEGVEPDGYTMVSLFSACAELGALALGR 264
           +++V+W+++I  +A NGKP EAL LFREM   +    P+  TMVS+  ACA   AL  G+
Sbjct: 238 KNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGK 297

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
             H Y+ + GL   + V +AL+  Y++CG + + Q +F  M K++ V W++L+    ++G
Sbjct: 298 LIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHG 357

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
           +G++A+++F+EM   GF P  ++F+ VL ACSH G+V+EG   F+ M  E+GI P +EH+
Sbjct: 358 YGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHY 417

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
            CMVDLLGRA  + +A + I+++ + P   +W +LLGAC IH H  +AE A   L +LEP
Sbjct: 418 ACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEP 477

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
            ++G+YVLL+++YA  + W  V+ V++ +    ++K PG S +E+  +++ F   D  +P
Sbjct: 478 TNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNP 537

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           Q E++HA+L  ++ ++K  GY P+T+ V  D+++EEKE  +  HSEK+A+AF L+NT+ G
Sbjct: 538 QGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKG 597

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             +R+ KNLR+C DCH   K ISK   REI+VRD +RFHHFKDG CSC DYW
Sbjct: 598 DTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 18/326 (5%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I+   +  N  L   LY   H S   P   T   L+ + ++   +      H + + 
Sbjct: 42  NHLIQSLCKQGN--LKQALYLLSHESN--PTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF+   F+   L++M++    V +A KVF+   +R +  WN++    A  G+ N+ L L
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 232 FREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           +  M   GV  D +T   L  AC      +  L  G+  H ++ + G   +V+V   L+D
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMD 217

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF--VPGE 345
            Y++ G +  A  VF EM  +N VSWS ++   A NG   EALELF+EM +     VP  
Sbjct: 218 MYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           VT V VL AC+    +++G    +Y  R +    I+P I     ++ +  R G ++   +
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILR-RGLDSILPVI---SALITMYARCGKLESG-Q 332

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGH 428
            I + +   + V+W +L+ +  +HG+
Sbjct: 333 LIFDRMHKKDVVLWNSLISSYGLHGY 358


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/597 (40%), Positives = 355/597 (59%), Gaps = 5/597 (0%)

Query: 21   CRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
            C  + L        +  + SV+R C T  +          QVH ++I+ G+ +N+  +  
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDE--GEYFTLGSQVHVYAIKCGI-INDSFVST 1037

Query: 81   YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
             LI  + S    M  A  +     D ++ +WN ++ GY +S     A+E +S MH  GI 
Sbjct: 1038 ALI-DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 141  PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
             D  T    +KA   L +++ G+Q  + AI+ GF + ++V + ++ MY   G + +A ++
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 201  FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
            F  +S  D VAW ++I+G+  NG  + AL+++  M   GV+PD YT  +L  A + L AL
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 261  ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
              G++ H  V K+  S +  V  +L+D Y KCG +  A RVFR+M  R  V W+ +++GL
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 321  AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
            A +G   EAL LF+ M+  G  P +VTF+GVL ACSH G+  E + YF  M   YGI P+
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 381  IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            IEH+ C+VD LGRAG +++A   I +M    +A ++R LLGAC   G +  A+     LL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 441  QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
             L+P  S  YVLLSN+YA  ++W +V + R  M  + VKK PG S +++ N+V  F + D
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDD 1456

Query: 501  RSHPQTEEIHAMLAEITKKLKLEG-YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
            RSHPQ   I+  + ++ K+++ EG YVP T+    D+EEEEKE AL YHSEK+AIAF L+
Sbjct: 1457 RSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLI 1516

Query: 560  NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +T P   +RV+KNLRVC DCH AIK ISK+  REIV+RD +RFHHF++G CSC DYW
Sbjct: 1517 STPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 185/379 (48%), Gaps = 21/379 (5%)

Query: 60   KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
            +Q+HA  I+      VP++N  +  Y    +V        A   F +  + ++ +WNTMI
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA------AEKTFINSPELDLISWNTMI 967

Query: 116  RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD---VRMGEQTHSVAIRN 172
              YA++   + A+  +  +   G+KPD  T   +L+A S   +     +G Q H  AI+ 
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 173  GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
            G  +  FV  +L+ +Y+  G + +A  +     + DL +WN+++ G+  + K  +AL  F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 233  REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
              M   G+  D  T+ +   A   L  L  G++   Y  K+G ++++ V++ +LD Y KC
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 293  GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
            G +  A  +F E+ + + V+W+T++ G   NG    AL ++  M + G  P E TF  ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 353  YACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHF--GCMVDLLGRAGLVKQAYEYIQNMLM 409
             A S    +++G   +   +K +Y     ++HF    +VD+  + G V+ AY   + M +
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 410  PPNAVIWRTLLGACTIHGH 428
                V W  +L     HGH
Sbjct: 1264 -RKVVFWNAMLLGLAQHGH 1281



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 165/337 (48%), Gaps = 5/337 (1%)

Query: 94   SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            +YA  +F   Q  NIF WN  +  +  +   + A++ +  +  S I  D+ T   +L A 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 154  SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
                D+ +GEQ H++ I++ F  +V V NSL++MY+  G V  A K F    E DL++WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 214  SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA---ELGALALGRRAHTYV 270
            ++I+ +A N    EA+  FR++  +G++PD +T+ S+  AC+   E     LG + H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 271  WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
             K G+ ++  V+ AL+D YSK G +  A+ +       +  SW+ ++ G   +   ++AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 331  ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            E F  M   G    E+T    + A S C +  +     +    + G    +     ++D+
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 391  LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
              + G +  A E     +  P+ V W T++     +G
Sbjct: 1144 YIKCGDMPNALELFGE-ISRPDEVAWTTMISGYIENG 1179



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 5/193 (2%)

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +AD+++G++ H+  + +G     ++ N+L+ MY+  G +  A +VF+  S+RDLV WNS+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 216 INGFASNGKPN-----EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +  +A     +     E   LF  +   G      T+  L   C   G + +    H Y 
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K+G   ++ V+ AL++ Y K G++  A+ +F +M +R+AV W+ ++     N F  EAL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 331 ELFKEMEIGGFVP 343
             F      GF P
Sbjct: 804 RFFSAFHRSGFFP 816



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 13/192 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           K+ HA  +  G   + PD  +YL   ++++      +  A  +F    D ++ TWN+++ 
Sbjct: 631 KRAHARIVTSG---DLPD--RYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 117 GYAESA-----NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            YA+ A     N L    L+  +   G      T   LLK       V++ E  H  A++
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFE  +FV  +LV++Y  +G V  A  +F+ M ERD V WN ++  +  N   +EAL  
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 232 FREMASEGVEPD 243
           F      G  PD
Sbjct: 806 FSAFHRSGFFPD 817


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/559 (42%), Positives = 351/559 (62%), Gaps = 3/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L QVHA  I  G   +   L K L  A  + S  +SY   IF  V +P+ F + ++IR  
Sbjct: 28  LHQVHAHVIVSGYGCSRFLLTKLLNLACAAGS--ISYTRQIFLIVPNPDSFLFTSLIRST 85

Query: 119 AESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++  N  + ++  Y++M +S + P  +T+  ++K+ + L  +R G   H   + NGF S 
Sbjct: 86  SKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSD 145

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V+VQ +L+  Y   G + +A KVF+ M +R +V WNS+I+G+  NG   EA+ LF  M  
Sbjct: 146 VYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKE 205

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            GVEP+  T VS+ SACA LGA  LG   H Y    GL  NV +  +L++ Y++CG +  
Sbjct: 206 IGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSK 265

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF  M++RN V+W+ ++ G   NG+G +A+ELF EM   G +P  +TFV VL AC+H
Sbjct: 266 AREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAH 325

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG   F+ M++EY ++P++EH  C+VD+LGRAGL+ +AY +I+ +   P   IW 
Sbjct: 326 AGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWT 385

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            +LGAC +H +  +        L  EP +   YV+LSN+YA   R   V+ VR  M+++ 
Sbjct: 386 AMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKC 445

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G+S ++L  + + F MGD+SH +T EI+  L ++ +K +  GYV  +++V  ++E
Sbjct: 446 LKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELE 505

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEE+E AL YHSEK+AIAF L+ T+ GT +R+VKNLR+C DCH AIK IS + +REI+VR
Sbjct: 506 EEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVR 565

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D+ RFHHFK+G CSC DYW
Sbjct: 566 DKLRFHHFKNGSCSCLDYW 584


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 324/521 (62%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  WN++I GY+     + A+ L++ M+  G++ +  T   +LK+ + 
Sbjct: 343 ARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAG 402

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                  EQ H+++I++G++   +V NSL+  Y     ++DA KVFE+    DLVA+ S+
Sbjct: 403 SQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSM 462

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  ++  G   EAL ++  M    ++PD +   SLF+ACA L A   G++ H +V K GL
Sbjct: 463 ITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGL 522

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V   N+L++ Y+KCG I  A  +F E+  R  VSWS ++ GLA +G G++AL+LF +
Sbjct: 523 LSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQ 582

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G +P  +T V VL AC+H G+V E   +F  M+  +GI P  EH+ CMVD+LGR G
Sbjct: 583 MLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVG 642

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A   ++ M    +A +W  LLGA  IH +  +   A   LL LEP+ SG ++LL+N
Sbjct: 643 RLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLAN 702

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W NV +VRR+M    VKK PG S +EL ++V+ F +GDRSHP+++EI+  L +
Sbjct: 703 IYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDD 762

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++L   GYVP  E    D+E+ EKE  L +HSEK+A+AF L+ T PG P+RV KNLRV
Sbjct: 763 LRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRV 822

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISKV SREI+VRD +RFHHF+DG CSC DYW
Sbjct: 823 CIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 186/384 (48%), Gaps = 6/384 (1%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L  CA    ++   +VH + I+ G   ++P     L+        P + A  +F  + 
Sbjct: 193 TVLNACAGLEDENYGMKVHGYLIKLGYD-SDPFSANALLDMYAKSGCPEA-AIAVFYEIP 250

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
            P+I +WN +I G        LA++L  KM    + P   T    LKA + +  V++G Q
Sbjct: 251 KPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ 310

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS  ++   E   FV   L+ MY+  G ++DA  VF+LM  +D++ WNS+I+G+++ G 
Sbjct: 311 LHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGY 370

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EA++LF  M  EG+E +  T+ ++  + A   A     + HT   K G   +  V N+
Sbjct: 371 DIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANS 430

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           LLD Y KC ++  A +VF      + V++++++   +  G G+EAL+++  M+     P 
Sbjct: 431 LLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPD 490

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
              F  +  AC++    ++G      +  + G++  +     +V++  + G +  A   I
Sbjct: 491 AFIFSSLFNACANLSAYEQGKQIHVHVL-KCGLLSDVFAGNSLVNMYAKCGSIDDA-SCI 548

Query: 405 QNMLMPPNAVIWRTLLGACTIHGH 428
            N +     V W  ++G    HGH
Sbjct: 549 FNEISWRGIVSWSAMIGGLAQHGH 572



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 172/356 (48%), Gaps = 38/356 (10%)

Query: 107 NIFTWNTMIRGYAESANPLLA-----VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           N FT++++++G + + N  L      V L ++M  +GI P+  +   +L A + L D   
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + H   I+ G++S  F  N+L+ MYA  G  + A  VF  + + D+V+WN+VI G   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           + K + AL L  +M S  V P  +T+ S   ACA +G + LGR+ H+ + K+ +  +  V
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV 326

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
              L+D YSKCG++  A+ VF  M  ++ + W++++ G +  G+  EA+ LF  M   G 
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL 386

Query: 342 VPGEVTFVGVLYACS-----------HCGMVDEGFSY----FKRMKDEYGIMPKIEH--- 383
              + T   +L + +           H   +  G+ Y       + D YG    +E    
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 384 ------------FGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACT 424
                       +  M+    + GL ++A   Y  +Q+  + P+A I+ +L  AC 
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACA 502



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 51/326 (15%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           YP LL   +   DV  G   H+  IR     L+ ++N LV++Y+     + A K+    S
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIR---LGLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 206 ERDLVAWNSVINGFASNGKPNEAL------------------------------------ 229
           E DLV+W+++I+G+  NG+  EAL                                    
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 230 ----TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
                L  EM S G+ P+ +++ ++ +ACA L     G + H Y+ K+G   +    NAL
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           LD Y+K G   AA  VF E+ K + VSW+ ++ G  ++     AL+L  +M      P  
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            T    L AC+  G+V  G    S   +M  E      +     ++D+  + GL++ A  
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVG----LIDMYSKCGLLQDA-R 344

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGH 428
            + +++   + ++W +++   +  G+
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGY 370


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/597 (40%), Positives = 355/597 (59%), Gaps = 5/597 (0%)

Query: 21   CRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
            C  + L        +  + SV+R C T  +          QVH ++I+ G+ +N+  +  
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDE--GEYFTLGSQVHVYAIKCGI-INDSFVST 1037

Query: 81   YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
             LI  + S    M  A  +     D ++ +WN ++ GY +S     A+E +S MH  GI 
Sbjct: 1038 ALI-DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 141  PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
             D  T    +KA   L +++ G+Q  + AI+ GF + ++V + ++ MY   G + +A ++
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 201  FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
            F  +S  D VAW ++I+G+  NG  + AL+++  M   GV+PD YT  +L  A + L AL
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 261  ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
              G++ H  V K+  S +  V  +L+D Y KCG +  A RVFR+M  R  V W+ +++GL
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 321  AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
            A +G   EAL LF+ M+  G  P +VTF+GVL ACSH G+  E + YF  M   YGI P+
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 381  IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            IEH+ C+VD LGRAG +++A   I +M    +A ++R LLGAC   G +  A+     LL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 441  QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
             L+P  S  YVLLSN+YA  ++W +V + R  M  + VKK PG S +++ N+V  F + D
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDD 1456

Query: 501  RSHPQTEEIHAMLAEITKKLKLEG-YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
            RSHPQ   I+  + ++ K+++ EG YVP T+    D+EEEEKE AL YHSEK+AIAF L+
Sbjct: 1457 RSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLI 1516

Query: 560  NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +T P   +RV+KNLRVC DCH AIK ISK+  REIV+RD +RFHHF++G CSC DYW
Sbjct: 1517 STPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 185/379 (48%), Gaps = 21/379 (5%)

Query: 60   KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
            +Q+HA  I+      VP++N  +  Y    +V        A   F +  + ++ +WNTMI
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA------AEKTFINSPELDLISWNTMI 967

Query: 116  RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD---VRMGEQTHSVAIRN 172
              YA++   + A+  +  +   G+KPD  T   +L+A S   +     +G Q H  AI+ 
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 173  GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
            G  +  FV  +L+ +Y+  G + +A  +     + DL +WN+++ G+  + K  +AL  F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 233  REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
              M   G+  D  T+ +   A   L  L  G++   Y  K+G ++++ V++ +LD Y KC
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 293  GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
            G +  A  +F E+ + + V+W+T++ G   NG    AL ++  M + G  P E TF  ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 353  YACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHF--GCMVDLLGRAGLVKQAYEYIQNMLM 409
             A S    +++G   +   +K +Y     ++HF    +VD+  + G V+ AY   + M +
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 410  PPNAVIWRTLLGACTIHGH 428
                V W  +L     HGH
Sbjct: 1264 -RKVVFWNAMLLGLAQHGH 1281



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 165/337 (48%), Gaps = 5/337 (1%)

Query: 94   SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            +YA  +F   Q  NIF WN  +  +  +   + A++ +  +  S I  D+ T   +L A 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 154  SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
                D+ +GEQ H++ I++ F  +V V NSL++MY+  G V  A K F    E DL++WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 214  SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA---ELGALALGRRAHTYV 270
            ++I+ +A N    EA+  FR++  +G++PD +T+ S+  AC+   E     LG + H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 271  WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
             K G+ ++  V+ AL+D YSK G +  A+ +       +  SW+ ++ G   +   ++AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 331  ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            E F  M   G    E+T    + A S C +  +     +    + G    +     ++D+
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 391  LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
              + G +  A E     +  P+ V W T++     +G
Sbjct: 1144 YIKCGDMPNALELFGE-ISRPDEVAWTTMISGYIENG 1179



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 5/193 (2%)

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +AD+++G++ H+  + +G     ++ N+L+ MY+  G +  A +VF+  S+RDLV WNS+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 216 INGFASNGKPN-----EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +  +A     +     E   LF  +   G      T+  L   C   G + +    H Y 
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K+G   ++ V+ AL++ Y K G++  A+ +F +M +R+AV W+ ++     N F  EAL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 331 ELFKEMEIGGFVP 343
             F      GF P
Sbjct: 804 RFFSAFHRSGFXP 816



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 13/192 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           K+ HA  +  G   + PD  +YL   ++++      +  A  +F    D ++ TWN+++ 
Sbjct: 631 KRAHARIVTSG---DLPD--RYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 117 GYAESA-----NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            YA+ A     N L    L+  +   G      T   LLK       V++ E  H  A++
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFE  +FV  +LV++Y  +G V  A  +F+ M ERD V WN ++  +  N   +EAL  
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 232 FREMASEGVEPD 243
           F      G  PD
Sbjct: 806 FSAFHRSGFXPD 817


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 329/527 (62%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S+ +     +F  +   +I +WNT+I G A++     A+ +  +M  + ++PD+ T   +
Sbjct: 183 SYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSV 242

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L   ++  ++  G++ H  AIRNG+++ VF+ +SL+ MYA    V D+C+VF ++ + D 
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDG 302

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++WNS+I G   NG  +E L  F++M    ++P+  +  S+  ACA L  L LG++ H Y
Sbjct: 303 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 362

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + +     NV + +AL+D Y+KCG I  A+ +F +M   + VSW+ +++G A++G   +A
Sbjct: 363 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 422

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + LFK ME+ G  P  V F+ VL ACSH G+VDE + YF  M  +Y I+P +EH+  + D
Sbjct: 423 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 482

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGR G +++AYE+I +M + P   +W TLL AC +H +  +AE     L  ++P++ G 
Sbjct: 483 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 542

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+Y+   RW + +++R  M  + +KK P  S +E+ N+V  F  GD+SHP  + I
Sbjct: 543 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 602

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L  + ++++ EGYV  T  V  D+EEE+K   L  HSE++AI F +++T  GT +RV
Sbjct: 603 NEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRV 662

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KNLRVC DCH A K ISK+  REIVVRD SRFHHFKDG CSC D+W
Sbjct: 663 TKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 217/442 (49%), Gaps = 51/442 (11%)

Query: 45  CITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---I 99
           C TLLQ  +S  SK + KQ+HA  +R  +P  +P L    +  I+S+   ++  H+   I
Sbjct: 8   CKTLLQNPSSVKSKSQAKQLHAQILRTSLP--SPSL----LSTILSIYSNLNLLHDSLLI 61

Query: 100 FSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           F+ +  P     W ++IR Y      L ++  + +M  SG  PD + +P +LK+ + + D
Sbjct: 62  FNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKD 121

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF---------------GHVKDAC----- 198
           +R GE  H   IR G    ++  N+L++MY+ F               G   D       
Sbjct: 122 LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK 181

Query: 199 ---------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                    KVFE+M +RD+V+WN+VI+G A NG   +AL + REM +  + PD +T+ S
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +    AE   L  G+  H Y  + G   +V + ++L+D Y+KC  +  + RVF  + + +
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHD 301

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FS 366
            +SW++++ G   NG   E L+ F++M I    P  V+F  ++ AC+H   +  G     
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           Y  R + +  +         +VD+  + G ++ A  +I + +   + V W  ++    +H
Sbjct: 362 YIIRSRFDGNVFIA----SALVDMYAKCGNIRTA-RWIFDKMELYDMVSWTAMIMGYALH 416

Query: 427 GHS--AIAEIARSTLLQLEPKH 446
           GH+  AI+   R  +  ++P +
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNY 438


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/521 (41%), Positives = 331/521 (63%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +FS ++  +  +WN+MI  Y ++ +   A++L+ KM  + +KPD+ TY  LL   ++
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQ 487

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+ +G++ H    + GF S + V N+LV MYA  G + D+ KVFE M  RD++ WN++
Sbjct: 488 LGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTI 547

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I     +   N  L +   M +EGV PD  TM+S+   C+ L A   G+  H  ++K+GL
Sbjct: 548 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 607

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V N L++ YSKCG +  + +VF+ M+ ++ V+W+ L+    + G GK+A+  F E
Sbjct: 608 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGE 667

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME  G VP  V FV +++ACSH G+V+EG +YF RMK +Y I P+IEH+ C+VDLL R+ 
Sbjct: 668 MEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSA 727

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A ++I +M + P++ IW  LL AC + G + IA+     +++L P  +G YVL+SN
Sbjct: 728 LLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSN 787

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W  V+ +R+++    +KK PG S +E+ N+V+ F  G +   Q EE++ +L  
Sbjct: 788 VYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGM 847

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +   +  EGY+   + V  DI+E+EK D L  HSE++AIAF L+NT PGTP++V+KNLRV
Sbjct: 848 LAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRV 907

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K ISK+  RE++VRD +RFH FKDG CSC DYW
Sbjct: 908 CEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 159/279 (56%), Gaps = 15/279 (5%)

Query: 100 FSHVQDP--------------NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           ++H +DP              N++ WN++IR    +     A+ LYS+     ++PDT+T
Sbjct: 117 YAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 176

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +P ++ A + L D  M +  H   +  GF S +++ N+L+ MY  F  +  A KVFE M 
Sbjct: 177 FPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 236

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            RD+V+WNS+I+G+ +NG  NEAL ++    + GV PD YTM S+  AC  LG++  G  
Sbjct: 237 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 296

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  + K+G+  +V VNN LL  Y K   +I  +R+F +M  R+AVSW+T++ G +  G 
Sbjct: 297 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 356

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            +E+++LF EM +  F P  +T   +L AC H G ++ G
Sbjct: 357 YEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFG 394



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 198/403 (49%), Gaps = 15/403 (3%)

Query: 25  SLYHSTPASQENPIT----SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
           SLY  T   +  P T    SV+  C  LL          K +H   +  G   ++  +G 
Sbjct: 160 SLYSETQRIRLQPDTYTFPSVINACAGLLDF-----EMAKSIHDRVLXMGFG-SDLYIGN 213

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
            LI      +  +  A  +F  +   ++ +WN++I GY  +     A+E+Y +    G+ 
Sbjct: 214 ALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 272

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD++T   +L+A   L  V  G+  H +  + G +  V V N L+ MY  F  + D  ++
Sbjct: 273 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 332

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ M  RD V+WN++I G++  G   E++ LF EM ++  +PD  T+ S+  AC  LG L
Sbjct: 333 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDL 391

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             G+  H Y+   G   +   +N L++ Y+KCG ++A+Q VF  M+ +++VSW++++   
Sbjct: 392 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 451

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
             NG   EA++LFK M+     P  VT+V +L   +  G +  G      +  + G    
Sbjct: 452 IQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLA-KMGFNSN 509

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           I     +VD+  + G +  + +  +NM    + + W T++ +C
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENM-KARDIITWNTIIASC 551


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 353/586 (60%), Gaps = 17/586 (2%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY-- 95
           ++SV+  C+ L       +     +H ++++HG+     D   ++  A++ +   +    
Sbjct: 173 VSSVLPMCVLL-----GDRALALAMHLYAVKHGL-----DDELFVCNAMIDVYGKLGMLE 222

Query: 96  -AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
               +F  +   ++ TWN++I G+ +      AVE++  M  SG+ PD  T   L  AI+
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 155 KLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           +  D+  G   H   +R G++   +   N++V MYA    ++ A ++F+ M  RD V+WN
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 214 SVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           ++I G+  NG  +EA+ ++  M   EG++P   T VS+  A + LGAL  G R H    K
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIK 402

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            GL+ +V V   ++D Y+KCG +  A  +F +  +R+   W+ ++ G+ V+G G +AL L
Sbjct: 403 TGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F +M+  G  P  VTFV +L ACSH G+VD+G ++F  M+  YGI P  +H+ CMVD+ G
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFG 522

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +  A+++I+NM + P++ IW  LLGAC IHG+  + ++A   L +L+PK+ G YVL
Sbjct: 523 RAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVL 582

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS--HPQTEEIH 510
           +SN+YA   +W  V EVR  + ++ ++KTPG S +E+   V  F+ G++   HPQ EEI 
Sbjct: 583 MSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQ 642

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             L ++  K++  GYVP    V  D+EE+EKE  L+ HSE++AIAF ++NT P TP+ + 
Sbjct: 643 RELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIY 702

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH A K ISK+  REI+VRD +RFHHFKDG+CSC D+W
Sbjct: 703 KNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 200/396 (50%), Gaps = 19/396 (4%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+HA ++R G+   +      L++A +     +  A+  F  ++  ++  WN M+ G   
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFG-RVRDAYRAFDEMRHRDVPAWNAMLSGLCR 147

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +A    AV L+ +M + G+  D  T   +L     L D  +    H  A+++G +  +FV
Sbjct: 148 NARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFV 207

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+++ +Y   G +++  KVF+ MS RDLV WNS+I+G    G+   A+ +F  M   GV
Sbjct: 208 CNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGV 267

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYV----WKVGLSDNVNVNNALLDFYSKCGIII 296
            PD  T++SL SA A+ G +  GR  H Y+    W VG   ++   NA++D Y+K   I 
Sbjct: 268 SPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG---DIIAGNAIVDMYAKLSKIE 324

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYAC 355
           AAQR+F  M  R+AVSW+TL+ G   NG   EA+ ++  M+   G  P + TFV VL A 
Sbjct: 325 AAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAY 384

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPN 412
           SH G + +G +    +  + G+   +    C++DL  + G + +A   +E        P 
Sbjct: 385 SHLGALQQG-TRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP- 442

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKH 446
              W  ++    +HGH A A    S + Q  + P H
Sbjct: 443 ---WNAVISGVGVHGHGAKALSLFSQMQQEGISPDH 475



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKV 200
           D  T+P LL+A           Q H+ A+R G      F   +LVH Y  FG V+DA + 
Sbjct: 70  DAFTFPPLLRAAQGPG---TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ M  RD+ AWN++++G   N +  EA+ LF  M  EGV  D  T+ S+   C  LG  
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           AL    H Y  K GL D + V NA++D Y K G++   ++VF  M  R+ V+W++++ G 
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
              G    A+E+F  M   G  P  +T + +  A + CG +  G S    M      +  
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           I     +VD+  +   ++ A     +M +  +AV W TL+
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPV-RDAVSWNTLI 345


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 346/576 (60%), Gaps = 52/576 (9%)

Query: 47  TLLQVC--ASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           TL + C  A +  + +Q+H   ++HG    V + +  +  Y  +  +  +  M Y+    
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS---- 192

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
               + ++  WNTMI GY +      A  L+++M V  I                     
Sbjct: 193 ---GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGS------------------- 230

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                                N +++  A  G++ DA K+F+ MSERD ++W+S+++G+ 
Sbjct: 231 --------------------WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYI 270

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           S G+  EAL +F++M  E   P  + + S+ +AC+ +GA+  GR  H Y+ +  +  +  
Sbjct: 271 SAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV 330

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           +  ALLD Y+KCG +     VF EM++R   +W+ ++ GLA++G  ++ALELF +++ G 
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGR 390

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P  +T VGVL AC+H G VD+G   F+ M++ YG+ P++EH+GCMVDLLGR+GL  +A
Sbjct: 391 MKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEA 450

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + I +M M PNA +W  LLGAC IHG+  +AE     LL+LEP++SG YVLLSN+YA  
Sbjct: 451 EDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKV 510

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            R+ +V ++R+ M    +K  PG S+V+L   V EF MGD SHPQ +EI+  L  I ++L
Sbjct: 511 GRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERL 570

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           ++ G+ P T  V  DI+EEEKE A++YHSEK+AIAF L+NT PG  + +VKNLRVC DCH
Sbjct: 571 QMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCH 630

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A KLIS+++ REI+VRDR R+HHFK+G CSC+D+W
Sbjct: 631 SATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 72/335 (21%)

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAA--FGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           Q H++ +R+G     +V  +L+  YA   F +   A KVF  +   ++  WN VI G   
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N K  +A+  +  M  +   P+ +T  +LF AC+   A+  GR+ H +V K G+  +V++
Sbjct: 111 NNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 282 N------------------------------NALLDFYSKCGIIIAAQ------------ 299
                                          N ++D Y KCG++ AA+            
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 300 -------------------RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
                              ++F EM +R+ +SWS++V G    G  KEALE+F++M+   
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 341 FVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             PG      VL ACS+ G +D+G    +Y KR   +   +        ++D+  + G +
Sbjct: 290 TRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT----ALLDMYAKCGRL 345

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
              +E  + M        W  ++G   IHG +  A
Sbjct: 346 DMGWEVFEEM-KEREIFTWNAMIGGLAIHGRAEDA 379


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/439 (47%), Positives = 297/439 (67%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           + V  +++  Y+  G V+DA  +F+ M E+DLV W+++I+G+A + KP EAL LF EM  
Sbjct: 14  LVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQV 73

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G++PD  T++S+ SACA LG L   +  H YV K GL   + VNNAL+D Y+KCG + A
Sbjct: 74  FGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGA 133

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF +M+ RN +SW++++   A++G    AL+ F +M+     P  VTFVGVLYACSH
Sbjct: 134 ARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSH 193

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG   F  M +E+ I PK EH+GCMVDL GRA L++ A E ++ M + PN VIW 
Sbjct: 194 AGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWG 253

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +L+ AC IHG + + E A   +L+LEP H G  V LSN+YA ++RW +V E+R  M +  
Sbjct: 254 SLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRG 313

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           + K  G S +EL N+V+EF M D+ H Q ++I+  L E+ K+LKL GY P T +V  D+E
Sbjct: 314 ISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVE 373

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE K++ + +HSEK+A+ + L+    G+ +R+VKNLRVC DCH  IKL+SKVY  EI+VR
Sbjct: 374 EEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVR 433

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           DR+RFHH+K G CSC DYW
Sbjct: 434 DRTRFHHYKAGVCSCNDYW 452



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ ++  W+ MI GYAES  P  A+ L+S+M V GIKPD  T   ++ A ++
Sbjct: 33  ARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACAR 92

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +   +  H    +NG    + V N+L+ MYA  G++  A  VFE M  R++++W S+
Sbjct: 93  LGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSM 152

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           IN FA +G  + AL  F +M  E ++P+G T V +  AC+  G +  GRR         +
Sbjct: 153 INAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFA-----SM 207

Query: 276 SDNVNVN------NALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKE 328
           ++  N+         ++D + +  ++  A  +   M    N V W +L+    ++G    
Sbjct: 208 TNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHG---- 263

Query: 329 ALELFKEMEIGGFVPGEV 346
                 E E+G F   +V
Sbjct: 264 ------ENELGEFAAKQV 275



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S N+ V  A++  YS+ G +  A+ +F +M +++ V WS ++ G A +   +EAL LF E
Sbjct: 11  SRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSE 70

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ G  P +VT + V+ AC+  G++D    +     D+ G+   +     ++D+  + G
Sbjct: 71  MQVFGIKPDQVTILSVISACARLGVLDRA-KWIHMYVDKNGLGGALPVNNALIDMYAKCG 129

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +  A    + M    N + W +++ A  IHG ++ A
Sbjct: 130 NLGAARGVFEKM-QSRNVISWTSMINAFAIHGDASNA 165


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 370/663 (55%), Gaps = 59/663 (8%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           H K  +     DL  ++  + H  P ++ + I S+V     +L  C S K   + K+VH 
Sbjct: 196 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV----NILPACGSLKAVPQTKEVHG 251

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
            +IR+G  L+   +G  LI A       M  A  +F+ ++  ++ +WN M+ GY++S N 
Sbjct: 252 NAIRNGTFLD-VFVGNALIDAYAKCGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 309

Query: 125 LLAVELYSKMH-----------------------------------VSGIKPDTHTYPFL 149
             A EL+  M                                     SG  P+  T   +
Sbjct: 310 KAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISV 369

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESL----------VFVQNSLVHMYAAFGHVKDACK 199
           L A + L     G + H+ +++N   +L          + V N+L+ MY+     K A  
Sbjct: 370 LSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARS 429

Query: 200 VFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSACA 255
           +F+   + ER++V W  +I G A  G  N+AL LF EM SE  GV P+ YT+  +  ACA
Sbjct: 430 IFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACA 489

Query: 256 ELGALALGRRAHTYVWKVGLSDNVN--VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
            L A+ +G++ H YV +    D+    V N L++ YSKCG +  A+ VF  M +++A+SW
Sbjct: 490 HLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISW 549

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++++ G  ++G G EAL++F +M   GFVP ++TF+ VLYACSHCGMVD+G SYF  M  
Sbjct: 550 TSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSA 609

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +YG+ P+ EH+   +DLL R G + +A++ +++M M P AV+W  LL AC +H +  +AE
Sbjct: 610 DYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAE 669

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
            A + L+++  ++ G Y L+SN+YA   RW +V  +R  M K  +KK PG S V+     
Sbjct: 670 HALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGT 729

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
             FF+GDRSHP + +I+A+L  +  ++K  GYVP T     D++EEEK + L  HSEK+A
Sbjct: 730 ASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLA 789

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +A+ L+ T PG P+R+ KNLRVC DCH A   ISK+   EIVVRD SRFHHFK+G CSC 
Sbjct: 790 LAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCG 849

Query: 614 DYW 616
            YW
Sbjct: 850 GYW 852



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 9/286 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YA  +   V       WN +IR + +      A+ +  +M  +G + D  T P +LKA  
Sbjct: 69  YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACG 128

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVA 211
           +L   R G   H +   NGFES VF+ N+LV MY+  G +++A  +F+ +++R   D+++
Sbjct: 129 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 188

Query: 212 WNSVINGFASNGKPNEALTLFREMA------SEGVEPDGYTMVSLFSACAELGALALGRR 265
           WNS+++    +     AL LF +M             D  ++V++  AC  L A+   + 
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    + G   +V V NAL+D Y+KCG++  A +VF  M  ++ VSW+ +V G + +G 
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            K A ELFK M         VT+  V+   S  G   E  + F++M
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 52/293 (17%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V  Y A G    A  V E ++    V WN +I      G+ + A+ +   M   G   D
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLD 116

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+  +  AC EL +   G   H  +   G   NV + NAL+  YS+CG +  A  +F 
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 304 EMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEM------------------------ 336
           E+ +R   + +SW+++V     +     AL+LF +M                        
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 236

Query: 337 -----------EIGGFVPGEVTFVGVLY------ACSHCGMVDEGFSYFKRMKDEYGIMP 379
                      E+ G      TF+ V        A + CG+++     F  M+       
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME-----FK 291

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHGHS 429
            +  +  MV    ++G  K A+E  +NM    +P + V W  ++   +  G S
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 344


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/542 (41%), Positives = 327/542 (60%), Gaps = 37/542 (6%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV----RMGEQTHS 167
           + +IR +A S  P  A+ LY+ +  +G+ P  HT P LLK+++    V    R+    H+
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 168 VAIRNGFESLVFVQNSLVHMYAAF--------------------------------GHVK 195
            A+R G    + V N+L+ ++A                                  G V 
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVA 176

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           DA  +F+ M ER+ V+W++++NG+   G   EAL +F +M ++GV PD   +V + +ACA
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACA 236

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           +LGAL  G+  H Y+    +   V +  AL+D Y+KCG +     VF  M+ +N ++W+T
Sbjct: 237 QLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT 296

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ GLA++G G ++L LF +ME  G  P ++ F+G L AC+H G+VD+G   F  M + Y
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNY 356

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           GI PKIEH+GCMVDLL R GL+ +A + ++ M M P+A+IW  L+  C  H +  +AE  
Sbjct: 357 GIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 416

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
               ++LEP  SG YVLL N+Y+   R  + +E+R  M ++ V+KTPG S VE+   + +
Sbjct: 417 IKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQ 476

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKL-EGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           F +GD SHP+ ++I     EI  +++L EGYVP  + V  DIEEEE E ALS HSEK+AI
Sbjct: 477 FIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAI 536

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF L++T    P+R+VKNLRVC DCH   KLISKVY REI+VRDR+RFH FKDG CSC+D
Sbjct: 537 AFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKD 596

Query: 615 YW 616
           YW
Sbjct: 597 YW 598


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/633 (38%), Positives = 363/633 (57%), Gaps = 51/633 (8%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
           Q N  +   R  +  ++ C S + +LKQVHAF ++ G   +N    + L  +  S    +
Sbjct: 7   QPNTASYYPRLDVPQIKACKSMR-ELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDI 65

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANP-LLAVELYSKM-HVSGIKPDTHTYPFLLK 151
            YA ++F  + + N F WNT+IR  AE+ +  L A+ ++ +M   + ++P+  T+P +LK
Sbjct: 66  GYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLK 125

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA-------------- 197
           A + +A +  G+Q H + ++ G     FV  +L+ MY   G ++DA              
Sbjct: 126 ACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDV 185

Query: 198 ----------------CKV-----------------FELMSERDLVAWNSVINGFASNGK 224
                           C V                 F+ M++R +V+WN +I+G+A NG 
Sbjct: 186 RNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGF 245

Query: 225 PNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             EA+ +F  M   G V P+  T+VS+  A + LG L LG+  H Y  K  +  +  + +
Sbjct: 246 YKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGS 305

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y+KCG I  A +VF  + + N ++W+ ++ GLA++G   +       ME  G  P
Sbjct: 306 ALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISP 365

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            +VT++ +L ACSH G+VDEG S+F  M +  G+ PKIEH+GCMVDLLGRAG +++A E 
Sbjct: 366 SDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEEL 425

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I NM M P+ VIW+ LLGA  +H +  I   A   L+Q+ P  SG YV LSN+YA    W
Sbjct: 426 ILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNW 485

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V  VR  M    ++K PG S +E+   + EF + D SH + ++IH+ML EI+ KL LE
Sbjct: 486 DGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLE 545

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           G++P T  V   ++E+ KE  L YHSEKIA+AF L++T P TP+ +VKNLR+C DCH ++
Sbjct: 546 GHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSM 605

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KLISK+Y R+IV+RDR RFHHF+ G CSC DYW
Sbjct: 606 KLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/587 (40%), Positives = 345/587 (58%), Gaps = 53/587 (9%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           + P   E   TSV++ C  L QV    K     VH F  ++G   N      ++  ++V 
Sbjct: 121 NAPNPDEYTFTSVLKACAGLAQVLEGQK-----VHCFVTKYGCESN-----LFVRNSLVD 170

Query: 89  LSFPMS---YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           L F +     A  +F  +   ++ +WNT+I GY  S     A  ++  M           
Sbjct: 171 LYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM----------- 219

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
                                        E  +   ++++  YA  G++++A ++FE M 
Sbjct: 220 ----------------------------MEKNLVSWSTMISGYARVGNLEEARQLFENMP 251

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGR 264
            R++V+WN++I G+A N K  +A+ LFR+M  EG + P+  T+VS+ SACA LGAL LG+
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
             H ++ +  +   + + NAL D Y+KCG ++ A+ VF EM +R+ +SWS +++GLA+ G
Sbjct: 312 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG 371

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
           +  EA   F EM   G  P +++F+G+L AC+H G+VD+G  YF  M   YGI PKIEH+
Sbjct: 372 YANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHY 431

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GC+VDLL RAG + QA   I +M M PN ++W  LLG C I+  +   E     +L+L+ 
Sbjct: 432 GCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDS 491

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
            HSG  V L+N+YA   R  +    R  M   +  KTPG S +E+ N V+EFFMGD SHP
Sbjct: 492 NHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHP 551

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           Q+  I++M+ E+  K+K+ GY P+T+ V  +I+EEEKEDALS HSEK+A+AF L+NT+ G
Sbjct: 552 QSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEG 611

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           T +R+VKNLRVC DCH AIK+ISK+  REIVVRDRSRFHHFKDG CS
Sbjct: 612 TTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 197/424 (46%), Gaps = 78/424 (18%)

Query: 43  RKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           RK I LL  CA+  S  +L ++ A  I   +P  +P++       + S    + ++  IF
Sbjct: 22  RKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIF 81

Query: 101 SH-VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGIKPDTHTYPFLLKAISKLA 157
           +H +  PNIF +N +++ +++       +  ++   V  +   PD +T+  +LKA + LA
Sbjct: 82  NHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLA 141

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            V  G++ H    + G ES +FV+NSLV +Y   G    A K+F+ M  RD+V+WN++I+
Sbjct: 142 QVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLIS 201

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+  +G  ++A  +F          DG    +L S                  W   +S 
Sbjct: 202 GYCFSGMVDKARMVF----------DGMMEKNLVS------------------WSTMISG 233

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
                      Y++ G +  A+++F  M  RN VSW+ ++ G A N    +A+ELF++M+
Sbjct: 234 -----------YARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQ 282

Query: 338 -IGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIM------PKIEHFGCM 387
             GG  P +VT V VL AC+H G +D G     + +R K E G+             GC+
Sbjct: 283 HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCV 342

Query: 388 VD-------------------LLGRA--GLVKQAYEYIQNML---MPPNAVIWRTLLGAC 423
           ++                   ++G A  G   +A+ +   M+   + PN + +  LL AC
Sbjct: 343 LEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC 402

Query: 424 TIHG 427
           T  G
Sbjct: 403 THAG 406


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/560 (42%), Positives = 351/560 (62%), Gaps = 4/560 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L QVHA  I  G   +   L K L  A  + S  +SY   IF  V +P+ F + ++I+  
Sbjct: 28  LHQVHAHIIVSGYGRSRSLLTKLLNLACAAGS--ISYTRQIFLAVPNPDSFLFTSLIKST 85

Query: 119 AESAN-PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++S N  + ++  YS+M +S + P  +T+  ++K+ + L+ ++ G   H   + +GF   
Sbjct: 86  SKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLD 145

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V+VQ +LV +Y   G + +A KVF+ + ER +VAWNS+I+G+  NG   EA+ LF  M  
Sbjct: 146 VYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKE 205

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            GVEPD  T VS+ SACA LGA +LG   H Y+   GL  NV +  +L++ Y +CG +  
Sbjct: 206 TGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSK 265

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF  M++RN V+W+ ++ G   NG+G +A+ELF EM   G  P  +TFV VL AC+H
Sbjct: 266 AREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAH 325

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIW 416
            G+V+EG   F  +++EY ++P +EH  C+VD+LGRAGL+ +AY +I+  +   P   I 
Sbjct: 326 AGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAIL 385

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             +LGAC +H +  +       LL  EP++   YV+LSN+YA   R   V+ VR  M+++
Sbjct: 386 TAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRK 445

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            +KK  G+S VE+  + + F MGD+SH +T  I+  L E+  K    GYVP +++V  ++
Sbjct: 446 CLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHEL 505

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEEE+E AL YHSEK+AIAF L+ T+ GTP+R+VKNLR+C DCH AIK IS + SREI+V
Sbjct: 506 EEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIV 565

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD+ RFHHFK G CSC DYW
Sbjct: 566 RDKLRFHHFKVGSCSCLDYW 585


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/566 (39%), Positives = 341/566 (60%), Gaps = 11/566 (1%)

Query: 61  QVHAFSIRHGVPLNN--PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           Q+HA  ++ G   +N   D  K   ++ +S S  ++YA +I   +  PN F +NTMIR Y
Sbjct: 11  QLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAY 70

Query: 119 AESANPLLAVELYSKMH------VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           ++S +P  A  L+  M       V+  +PD  TYPF+LKA SK    R G+Q H +  ++
Sbjct: 71  SDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKS 130

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G  S  ++ N+L+H+Y+  G    A KVF+ M +RD+V+W S+I+GF  N +P EA+ LF
Sbjct: 131 GVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLF 190

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
             M   G+EP+  T+ S+  ACA+ GAL  G R H++V +   S N NV+ AL+D Y+KC
Sbjct: 191 THMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKC 250

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  A  VF E  +++   W+ ++ GLA +G   +A+E F+ M+       E     VL
Sbjct: 251 GCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVL 310

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            A  + G+V EG  +F+R+K ++ I P I+H+GC+VD+L RAG +K A E+I+ M + P+
Sbjct: 311 SAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPD 369

Query: 413 AVIWRTLLGACTIHGHSAIAE--IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           AV+WRTL+  C I G    +E  +    LL ++ + +G YVLL N+YA   +W    + R
Sbjct: 370 AVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTR 429

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M +  + K P  S +E+   V EF  GD  H +   ++  L ++ ++L+ EGY P   
Sbjct: 430 ELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIVS 489

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            V  +I+++EK   L +HSEK+A++F LV ++PG+ +R+VKNLR C DCH  +KLISKVY
Sbjct: 490 EVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFMKLISKVY 549

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            R+I+VRDR RFHHF  G+CSC D W
Sbjct: 550 QRDIIVRDRIRFHHFSGGNCSCGDRW 575


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 347/565 (61%), Gaps = 12/565 (2%)

Query: 61  QVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           QVH   ++ G+   +    L K   +A +S    ++YA  + S     N + +NT++R +
Sbjct: 11  QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAF 70

Query: 119 AES---ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           +++     P  A+ L+  M      PD  T+PFLLK  S+     +G+Q H++  + GF 
Sbjct: 71  SQTPLPTPPFHALSLFLSMPSP---PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFA 127

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             +++QN L+HMY+ FG +  A  +F+ M  RD+V+W S+I G  ++  P EA+ LF  M
Sbjct: 128 PDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERM 187

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV--WKVGLSDNVNVNNALLDFYSKCG 293
              GVE +  T++S+  ACA+ GAL++GR+ H  +  W + +    NV+ AL+D Y+K G
Sbjct: 188 LQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGG 247

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I +A++VF ++  R+   W+ ++ GLA +G  K+A+++F +ME  G  P E T   VL 
Sbjct: 248 CIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLT 307

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           AC + G++ EGF  F  ++  YG+ P I+HFGC+VDLL RAG +K+A +++  M + P+ 
Sbjct: 308 ACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDT 367

Query: 414 VIWRTLLGACTIHGHSAIAE--IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           V+WRTL+ AC +HG +  AE  +    +  +    SG Y+L SN+YA   +W N  EVR 
Sbjct: 368 VLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRE 427

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M K+ + K PG S +E+   V EF MGD +HP+ EEI   LAE+  K++ EGY PR   
Sbjct: 428 LMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSE 487

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  ++++EEK   L +HSEK+A+A+ L+    G+ +R+VKNLR C DCH  +KLISK+Y 
Sbjct: 488 VLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYK 547

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           R+I+VRDR RFHHFK+G CSC+DYW
Sbjct: 548 RDIIVRDRIRFHHFKNGECSCKDYW 572


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/524 (43%), Positives = 325/524 (62%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  IF  +    + +WN+MI GY +S +   A+ ++ KM   G++P   T    L A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L D+  G+  H +  +   +S V V NSL+ MY+    V  A  +F+ +  + LV+W
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+A NG  NEAL  F EM S  ++PD +TMVS+  A AEL      +  H  V +
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  NV V  AL+D Y+KCG I  A+++F  M  R+ ++W+ ++ G   +G GK ++EL
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FKEM+ G   P ++TF+  L ACSH G+V+EG  +F+ MK +YGI P ++H+G MVDLLG
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + QA+++IQ M + P   ++  +LGAC IH +  + E A   + +L P   G +VL
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVL 541

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L+N+YA    W  V +VR  M K  ++KTPG SLVE+GN V  F+ G  SHPQ+++I++ 
Sbjct: 542 LANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSY 601

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L  +  +++  GYVP T N   D+E++ K   L+ HSEK+AIAF L+NT+ GTP+ + KN
Sbjct: 602 LETLVDEIRAAGYVPDT-NSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKN 660

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH A K IS V  REI+VRD  RFH FKDG CSC DYW
Sbjct: 661 LRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 174/325 (53%), Gaps = 5/325 (1%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           M++GYA+S++   A+  +S+M    ++P  + + +LLK     +D++ G++ H   I +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F   +F    +V+MYA    + DA  +F+ M ERDLV WN++I+G+A NG    AL L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M+ EG  PD  T+VS+  A A+   L +G   H YV + G    VNV+ AL+D YSKCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A+ +F  M  R  VSW++++ G   +G  + A+ +F++M   G  P  VT +G L+
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LM 409
           AC+  G ++ G  +  ++ D+  +   +     ++ +  +   V  A +  +N+    L+
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEI 434
             NA+I       C     +A  E+
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEM 324


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 334/520 (64%), Gaps = 2/520 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLA 157
           +F  +   ++ +WNT+I G+A++   + A+++  +M  +G +KPD+ T   +L   ++  
Sbjct: 182 VFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHV 241

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           DV  G++ H  A+RNGF+  VF+ +SL+ MYA    ++ + + F ++  +D ++WNS+I 
Sbjct: 242 DVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIA 301

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G   NG+ +  L  FR M  E V+P   +  S+  ACA L AL+LGR+ H  + ++G  D
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD 361

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           N  + ++L+D Y+KCG I  A+ VF  + KR+ V+W+ +++G A++G   +A+ LF+ M 
Sbjct: 362 NEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENML 421

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P  V F+ VL ACSH G+VDEG+ YF  M+ ++GI P +EH+  + DLLGRAG +
Sbjct: 422 EDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRL 481

Query: 398 KQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           ++AY++I NM  + P   +W  LL AC  H    +AE     LL ++ ++ G YVL+SN+
Sbjct: 482 EEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNI 541

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           Y+  QRW +   +R  M K+ +KKTP  S +E+GN+V  F  GD+SHP  ++I+  L  +
Sbjct: 542 YSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVL 601

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            ++++ EGYV  T  V  D++EE K + L  HSE++AIA+ +++T  GT +RV+KN+RVC
Sbjct: 602 LEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVC 661

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ADCH AIK I+K+  REI VRD SRFHHFK+G CSC DYW
Sbjct: 662 ADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 214/420 (50%), Gaps = 36/420 (8%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           S ++ I+ ++RK  T  +  + S  + KQ+HA  ++    L++ ++   L+ ++ S    
Sbjct: 4   STQHTISKILRK--TPNKTLSVSTRQAKQLHAHIVKTKGTLHSDNI---LVLSLYSNLNL 58

Query: 93  MSYAHNIFSHVQDPNIF-TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           + ++ ++F+ +  P     W+++I+ Y   +   L+   ++ M    + P+ H +P LLK
Sbjct: 59  LQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLK 118

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF---GHVKDA----------C 198
           A + L   ++    H+  +R G +S +++ N+L++ YA F   G V D           C
Sbjct: 119 ASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDC 178

Query: 199 --KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACA 255
             KVF++M  RD+V+WN+VI GFA NG   EAL + REM   G ++PD +T+ S+    A
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           E   +  G+  H Y  + G   +V + ++L+D Y+KC  +  + R F  + +++A+SW++
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNS 298

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ G   NG     L  F+ M      P  V+F  V+ AC+H   +  G       +  +
Sbjct: 299 IIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG-------RQLH 351

Query: 376 GIMPKI----EHF--GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           G + ++      F    +VD+  + G +K A  Y+ + +   + V W  ++  C +HGH+
Sbjct: 352 GCIVRLGFDDNEFIASSLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMHGHA 410


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 345/565 (61%), Gaps = 13/565 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           KQVH  +++ G+     D    +  ++V++   M    +A  +F+ ++  ++ +WN+MI 
Sbjct: 306 KQVHGIAVKSGL-----DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 360

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL-----KAISKLADVRMGEQTHSVAIR 171
             A+S+    +V L+  +   G+KPD  T   +      KA   L  +  G+Q H+ AI+
Sbjct: 361 SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK 420

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF+S + V + ++ MY   G + +A  VF  +S  D VAW S+I+G   NG  ++AL +
Sbjct: 421 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 480

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           +  M    V PD YT  +L  A + + AL  GR+ H  V K+    +  V  +L+D Y+K
Sbjct: 481 YHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 540

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG I  A R+F++M  RN   W+ ++VGLA +G  +EA+ LFK M+  G  P  V+F+G+
Sbjct: 541 CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 600

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L ACSH G+  E + Y   M ++YGI P+IEH+ C+VD LGRAGLV++A + I+ M    
Sbjct: 601 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 660

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           +A I R LLGAC I G     +   + L  LEP  S  YVLLSN+YA   RW +V + R+
Sbjct: 661 SASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARK 720

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M ++ VKK PG S +++ N +  F + DRSHPQ + I+  + E+ K ++ +GYVP TE 
Sbjct: 721 MMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 780

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
           V  D+E+EEKE +L YHSEK+AIA+ L++T   T +RV+KNLRVC DCH AIK ISKV+ 
Sbjct: 781 VLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFE 840

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REIV+RD +RFHHF+DG CSC DYW
Sbjct: 841 REIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 168/357 (47%), Gaps = 32/357 (8%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAES-----ANPLLAVELYSKMHVSGIKPDTHTYP 147
           +S A  +F    + ++ TWN ++  YA S      N    + L+  +  S       T  
Sbjct: 128 LSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLA 187

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +LK       +   E  H  AI+ G E  VFV  +LV++Y+  G ++DA  +F+ M ER
Sbjct: 188 PVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER 247

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA--LALGRR 265
           D+V WN ++ G+   G   EA  LF E    G+ PD +++  + + C   G   L LG++
Sbjct: 248 DVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQ 307

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    K GL  +V+V N+L++ YSK G    A+ VF +M+  + +SW++++   A +  
Sbjct: 308 VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 367

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACS--HCG---MVDEG---------FSYFKRM 371
            +E++ LF ++   G  P   T   +  A +   CG   ++D+G           +   +
Sbjct: 368 EEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 427

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
               GI+      G MV+    AG+V   + YI      P+ V W +++  C  +G+
Sbjct: 428 HVNSGILDMYIKCGDMVN----AGIV---FNYIS----APDDVAWTSMISGCVDNGN 473



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 7/281 (2%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL+      ++ +G+ TH+  + +G     F+ N+L+ MY+  G +  A +VF+   ERD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 209 LVAWNSVINGFAS-----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           LV WN+++  +A+     +G   E L LFR + +        T+  +   C   G L   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H Y  K+GL  +V V+ AL++ YSKCG +  A+ +F  MR+R+ V W+ ++ G    
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD-EGFSYFKRMKDEYGIMPKIE 382
           G  KEA +LF E    G  P E +   +L  C   G  D E       +  + G+   + 
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
               +V++  + G    A E   +M    + + W +++ +C
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDM-KHLDLISWNSMISSC 362


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/557 (40%), Positives = 339/557 (60%), Gaps = 2/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           ++VH    + G+ L  P +G  L+  + +    +S A  IF  + + N+ TW  +I GYA
Sbjct: 217 QKVHMEIAKAGLELE-PRVGTSLV-GMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA 274

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +     +A+EL  KM  + + P+  TY  +L+  +    +  G++ H   I++G+   ++
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+L+ MY   G +K+A K+F  +  RD+V W +++ G+A  G  +EA+ LFR M  +G
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           ++PD  T  S  ++C+    L  G+  H  +   G S +V + +AL+  Y+KCG +  A+
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF +M +RN V+W+ ++ G A +G  +EALE F++M+  G  P +VTF  VL AC+H G
Sbjct: 455 LVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVG 514

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG  +F+ M  +YGI P +EH+ C VDLLGRAG +++A   I  M   P   +W  L
Sbjct: 515 LVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGAL 574

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L AC IH      E A   +L+L+P   G YV LSN+YA   R+ + ++VR+ M K  V 
Sbjct: 575 LSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVV 634

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S +E+  +V  F + D+SHP+ +EI+A L ++T+++K +GYVP T  V  D++EE
Sbjct: 635 KEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEE 694

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           +K   L  HSE++AI + L+ T PGTP+R+VKNLRVC DCH A K ISKV  REI+ RD 
Sbjct: 695 QKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDA 754

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHF DG CSC D+W
Sbjct: 755 HRFHHFVDGVCSCGDFW 771



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 192/385 (49%), Gaps = 12/385 (3%)

Query: 48  LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           LLQ CA   S  + ++VHA  ++ G+  N     +YL   ++S+      ++ A  +F  
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPN-----RYLENTLLSMYAKCGSLTDARRVFDG 156

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++D NI +W  MI  +      L A + Y  M ++G KPD  T+  LL A +    +++G
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVG 216

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           ++ H    + G E    V  SLV MYA  G +  A  +F+ + E+++V W  +I G+A  
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ + AL L  +M    V P+  T  S+   C    AL  G++ H Y+ + G    + V 
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  Y KCG +  A+++F ++  R+ V+W+ +V G A  GF  EA++LF+ M+  G  
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P ++TF   L +CS    + EG S  +++    G    +     +V +  + G +  A  
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLV-HAGYSLDVYLQSALVSMYAKCGSMDDA-R 454

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
            + N +   N V W  ++  C  HG
Sbjct: 455 LVFNQMSERNVVAWTAMITGCAQHG 479



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 127/230 (55%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+ + + M + G +  +  +  LL+  ++L  +  G + H+  +++G +   +++N+L+ 
Sbjct: 80  ALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLS 139

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MYA  G + DA +VF+ + +R++V+W ++I  F +  +  EA   +  M   G +PD  T
Sbjct: 140 MYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVT 199

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            VSL +A      L +G++ H  + K GL     V  +L+  Y+KCG I  AQ +F ++ 
Sbjct: 200 FVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLP 259

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           ++N V+W+ L+ G A  G    ALEL ++M+     P ++T+  +L  C+
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 4/226 (1%)

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D +A +  ++     G+  EAL +   M  +G          L   CA L +L  GR  H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             + K G+  N  + N LL  Y+KCG +  A+RVF  +R RN VSW+ ++          
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGC 386
           EA + ++ M++ G  P +VTFV +L A ++  ++  G   + +  K    + P++     
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGT--S 237

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +V +  + G + +A + I + L   N V W  L+      G   +A
Sbjct: 238 LVGMYAKCGDISKA-QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 352/559 (62%), Gaps = 5/559 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           QVH   I+ G+  +   +G  ++  + S S  +S A  +F  +++ N  +WN+MI G+  
Sbjct: 214 QVHTMVIKSGLD-STIFVGNSMV-NMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVT 271

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +   L A EL+ +M + G+K     +  ++K  + + ++   +Q H   I+NG +  + +
Sbjct: 272 NGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNI 331

Query: 181 QNSLVHMYAAFGHVKDACKVFELM-SERDLVAWNSVINGFASNGKPNEALTLFREMA-SE 238
           + +L+  Y+    + DA K+F +M   +++V+W ++I+G+  NG+ + A+ LF +M   E
Sbjct: 332 KTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREE 391

Query: 239 GVEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           GVEP+ +T  S+ +ACA    ++  G++ H+   K G S+ + V++AL+  Y+K G I +
Sbjct: 392 GVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIES 451

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  VF+    R+ VSW++++ G A +G GK++L++F+EM         +TF+GV+ AC+H
Sbjct: 452 ANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTH 511

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG  YF  M  +Y I+P +EH+ CMVDL  RAG++++A + I  M  P  A IWR
Sbjct: 512 AGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWR 571

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           TLL AC +H +  + E+A   L+ L+P+ S  YVLLSN+YA    W    +VR+ M  ++
Sbjct: 572 TLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKK 631

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK  G+S +E+ N+ F F  GD SHPQ++ I+  L E++ +LK  GY P T+ V  D+E
Sbjct: 632 VKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVE 691

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE KE  LS HSE++AIAF L+ T PGTP+++VKNLRVC DCH  IKLISK+  R+IVVR
Sbjct: 692 EEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVR 751

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFHHFK G CSC DYW
Sbjct: 752 DSNRFHHFKGGSCSCGDYW 770



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 199/404 (49%), Gaps = 11/404 (2%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+VC     ++  KQVH   I+ G  + +  +G  L+   +     +     +F  ++ 
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGF-VEDVSVGTSLVDMYMKTE-SVEDGERVFDEMRV 155

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+ +W +++ GY ++     A++L+S+M + GIKP+  T+  +L  ++    V  G Q 
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ I++G +S +FV NS+V+MY+    V DA  VF+ M  R+ V+WNS+I GF +NG  
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA  LF  M  EGV+       ++   CA +  ++  ++ H  V K G   ++N+  AL
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 286 LDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVP 343
           +  YSKC  I  A ++F  M   +N VSW+ ++ G   NG    A+ LF +M    G  P
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEP 395

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            E TF  VL AC+      E    F     + G    +     +V +  + G ++ A E 
Sbjct: 396 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHS----AIAEIARSTLLQLE 443
            +  +   + V W +++     HG       I E  RS  L+L+
Sbjct: 456 FKRQV-DRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 498



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           ++  +F       +   N ++  ++ +     A+ L+  +  SG   D  +   +LK   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            L D  +G+Q H   I+ GF   V V  SLV MY     V+D  +VF+ M  +++V+W S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++ G+  NG   +AL LF +M  EG++P+ +T  ++    A  GA+  G + HT V K G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L   + V N++++ YSK  ++  A+ VF  M  RNAVSW++++ G   NG   EA ELF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 335 EMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSY 367
            M + G    +  F  V+  C+           HC ++  G  +
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 346/576 (60%), Gaps = 52/576 (9%)

Query: 47  TLLQVC--ASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           TL + C  A +  + +Q+H   ++HG    V + +  +  Y  +  +  +  M Y+    
Sbjct: 137 TLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS---- 192

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
               + ++  WNTMI GY +      A  L+++M V  I                     
Sbjct: 193 ---GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGS------------------- 230

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                                N +++  A  G++ DA K+F+ MSERD ++W+S+++G+ 
Sbjct: 231 --------------------WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYI 270

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           S G+  EAL +F++M  E   P  + + S+ +AC+ +GA+  GR  H Y+ +  +  +  
Sbjct: 271 SAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV 330

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           +  ALLD Y+KCG +     VF EM++R   +W+ ++ GLA++G  ++ALELF +++ G 
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGR 390

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P  +T VGVL AC+H G VD+G   F+ M++ YG+ P++EH+GCMVDLLGR+GL  +A
Sbjct: 391 MKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEA 450

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + I +M M PNA +W  LLGAC IHG+  +AE     LL+LEP++SG YVLLSN+YA  
Sbjct: 451 EDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKV 510

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            R+ +V ++R+ M    +K  PG S+V+L   V EF MGD SHPQ +EI+  L  I ++L
Sbjct: 511 GRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERL 570

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           ++ G+ P T  V  DI+EEEKE A++YHSEK+AIAF L+NT PG  + +VKNLRVC DCH
Sbjct: 571 QMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCH 630

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A KLIS+++ REI+VRDR R+HHFK+G CSC+D+W
Sbjct: 631 SATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 72/335 (21%)

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAA--FGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           Q H + +R+G     +V  +L+  YA   F +   A KVF  +   ++  WN VI G   
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N K  +A+  +  M  +   P+ +T  +LF AC+   A+  GR+ H +V K G+  +V++
Sbjct: 111 NNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 282 N------------------------------NALLDFYSKCGIIIAAQ------------ 299
                                          N ++D Y KCG++ AA+            
Sbjct: 170 KSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 300 -------------------RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
                              ++F EM +R+ +SWS++V G    G  KEALE+F++M+   
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 341 FVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             PG      VL ACS+ G +D+G    +Y KR   +   +        ++D+  + G +
Sbjct: 290 TRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT----ALLDMYAKCGRL 345

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
              +E  + M        W  ++G   IHG +  A
Sbjct: 346 DMGWEVFEEM-KEREIFTWNAMIGGLAIHGRAEDA 379


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 329/523 (62%), Gaps = 10/523 (1%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           +A  + S     ++F    ++  YA++    LA   + +      + D      +L A  
Sbjct: 62  HARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDE----APRRDVFLCNVMLAAY- 116

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
               V  GE   +  + +G      V  N+++H YA  G V  A +VF  M +RD  +W+
Sbjct: 117 ----VTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWS 172

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+++ +    +  +AL L+REM +  V PD  TMVS+ SAC+++GALA+G   H +V   
Sbjct: 173 SMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN 232

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+  +V +  AL+D Y+KCG I  + RVF  M  ++ ++WS++++GLA +GFG +AL LF
Sbjct: 233 GVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLF 292

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P EVTF+GVL +C+H G+V +G  YF  M   +G+ PK++H+GCMVDLLGR
Sbjct: 293 SRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGR 352

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +G +++A + I++M   P+AVIWR LLGAC I+ +  +AE A + L  L+P   G YVLL
Sbjct: 353 SGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLL 412

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA    W  V E+RRT+ +ER+++ PG S +E  N + EF  GDRSHP+++EI+ ML
Sbjct: 413 SNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKML 472

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+  +L+  GY P T  V  DI+E+ KE AL+ HSEK+A+AF L+ T  G+ +R+ KNL
Sbjct: 473 GEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNL 532

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R C DCH AIKLI+ +Y R++++RDR+RFHHF +G CSC+DYW
Sbjct: 533 RACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/596 (39%), Positives = 352/596 (59%), Gaps = 33/596 (5%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWN 112
           S + +LKQ+HA  ++ G+  ++  + K+L   I S S   + YA  +F     P+ F WN
Sbjct: 54  SKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWN 113

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            MIRG++ S  P  ++ LY +M       + +T+P LLKA S L+ +    Q H+   + 
Sbjct: 114 LMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKL 173

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G+E+ V+  NSL++ YAA G+ K A  +F+ + + D V+WNSVI G+A  GK + ALTLF
Sbjct: 174 GYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLF 233

Query: 233 R-------------------------------EMASEGVEPDGYTMVSLFSACAELGALA 261
           R                               EM +  VEPD  ++ +  SACA+LGAL 
Sbjct: 234 RKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 293

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G+  H+Y+ K  +  +  +   L+D Y+KCG +  A  VF+ +++++  +W+ L+ G A
Sbjct: 294 QGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYA 353

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +G G+EA+  F EM+  G  P  +TF  VL ACS+ G+V+EG   F  M+ +Y + P I
Sbjct: 354 YHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTI 413

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+GC+VDLL RAGL+ +A  +IQ M + PNAVIW  LL AC IH +  + E     L+ 
Sbjct: 414 EHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA 473

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           ++P H G YV  +N++A  ++W    E RR M ++ V K PG S + L     EF  GDR
Sbjct: 474 IDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDR 533

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPR-TENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
           SHP+ E+I +    + +KL+  GYVP   + +   ++++E+E  +  HSEK+AI + L+ 
Sbjct: 534 SHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIK 593

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T PGT +R++KNLRVC DCH   KLISK+Y R+IV+RDR+RFHHF+DG CSC DYW
Sbjct: 594 TKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/552 (39%), Positives = 334/552 (60%), Gaps = 32/552 (5%)

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            A ++F  +   N  +W  MI G+ ++     A+EL  ++H SG  P   ++   L A + 
Sbjct: 508  AKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACAN 567

Query: 156  LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + DV +G   HS+AI+ G +   +V N L+ MYA  G+V+D   VF  +  +D V+WNS+
Sbjct: 568  IGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 216  INGFASN-------------------------------GKPNEALTLFREMASEGVEPDG 244
            I+G + N                               G    AL LF +M + G++P+ 
Sbjct: 628  ISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQ 687

Query: 245  YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             T+ SL SAC  LGA+ LG + H  ++K+G    + V N+L+  Y KCG       VF E
Sbjct: 688  LTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEE 746

Query: 305  MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            M + + ++W+ ++VG A NG GKEA+++F++ME+ G +P +++F+GVL ACSH G+VDEG
Sbjct: 747  MPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG 806

Query: 365  FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            +++F  M  +YGIMP + H+ CMVDLLGRAG + +A   I+NM + P++VIW  LLGAC 
Sbjct: 807  WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACR 866

Query: 425  IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            IH +  + +     L Q+    S  YVLLSNL+A +  W  V E+R+ M  + + K PG 
Sbjct: 867  IHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGI 926

Query: 485  SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
            S +++ N++  F  GDR+H Q EEI++ L E     +  GY+P T  V  D+EEE+K++ 
Sbjct: 927  SWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNE 986

Query: 545  LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
            L YHSEK+A+ F +++T  G+P++++KNLR+C DCH  +K +SKV  R+I++RD +RFHH
Sbjct: 987  LLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHH 1046

Query: 605  FKDGHCSCRDYW 616
            F+DG CSC DYW
Sbjct: 1047 FRDGSCSCGDYW 1058



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 146/274 (53%), Gaps = 8/274 (2%)

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           + MS A  +F  + + N  +W  MI GY   ++   A +++ KM  +  +PD   +  +L
Sbjct: 309 YRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVL 368

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            AI+ L D+ +      +AI+ G+E  V V +++++ Y   G +  A   FE M ER+  
Sbjct: 369 SAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEY 428

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +W ++I  FA  G+ ++A+ L+  +  + V     T  ++ +A A++G +   R     +
Sbjct: 429 SWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKAR----LI 480

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
           +   L+ NV   NA++  Y++ G++  A+ +F++M  +N+ SW+ ++ G   N   +EAL
Sbjct: 481 FDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREAL 540

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           EL  E+   G VP + +F   L AC++ G V+ G
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIG 574



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 146/294 (49%), Gaps = 12/294 (4%)

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           +S ++ +  A  +F  +   ++ +W  +I  Y ++ +  +A++L+  M   GIKP+  T 
Sbjct: 631 LSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTV 690

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             LL A   L  +++GEQ H++  + GF++ +FV NSL+ MY   G+    C VFE M E
Sbjct: 691 TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPE 749

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
            DL+ WN+V+ G A NG   EA+ +F +M  EG+ PD  + + +  AC+  G +  G  A
Sbjct: 750 HDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG-WA 808

Query: 267 H--TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN 323
           H  +   K G+   V     ++D   + G +  A+ +   M  K ++V W  L+    ++
Sbjct: 809 HFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIH 868

Query: 324 ---GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
                G+   E   +M      P   T+V +    +  GM D+     K MKD+
Sbjct: 869 RNVELGQRVAERLFQMT----KPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQ 918



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 39/303 (12%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A + F  + + N ++W TMI  +A+      A++LY ++    +   T     ++ A
Sbjct: 412 LDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTA----MMTA 467

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +++  +    Q   +         V   N+++  Y   G +K+A  +F+ M  ++  +W
Sbjct: 468 YAQVGRI----QKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I GF  N +  EAL L  E+   G  P   +  S  SACA +G + +GR  H+   K
Sbjct: 524 AAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIK 583

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN--------- 323
            G   N  V N L+  Y+KCG +     VFR +R ++ VSW++L+ GL+ N         
Sbjct: 584 TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVV 643

Query: 324 ----------------------GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
                                 G G+ AL+LF +M   G  P ++T   +L AC + G +
Sbjct: 644 FEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAI 703

Query: 362 DEG 364
             G
Sbjct: 704 KLG 706



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 151/361 (41%), Gaps = 55/361 (15%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ +   ++ +WN+MI GY+++     A  L+       +  +  T+  LL   +K
Sbjct: 190 ARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF----VGKNIRTWTILLTGYAK 245

Query: 156 LADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              +    +   S+  RN     V   N+++  Y   G +K+A K+F+ M E+++ +WNS
Sbjct: 246 EGRIEEAREVFESMTERN-----VVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNS 300

Query: 215 VINGFASNGKPNEALTLFREMASEG-------------------------------VEPD 243
           V+ G+    + +EA  LF +M                                     PD
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
               V + SA   L  L L         K G   +V V +A+L+ Y++ G +  A   F 
Sbjct: 361 QSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFE 420

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV--TFVGVLYACSHCGMV 361
            M +RN  SW+T++   A  G   +A++L++       VP +   T   ++ A +  G +
Sbjct: 421 TMPERNEYSWTTMIAAFAQCGRLDDAIQLYER------VPEQTVATKTAMMTAYAQVGRI 474

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            +    F  +     + P +  +  ++    + G++K+A +  Q M +  N+  W  ++ 
Sbjct: 475 QKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV-KNSASWAAMIA 528

Query: 422 A 422
            
Sbjct: 529 G 529



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +F  N+ +      G V++A +VF  M +RD+V+WNS+ING++ NGK +EA  LF     
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           + +     T   L +  A+ G +   R     V++     NV   NA++  Y + G +  
Sbjct: 231 KNIR----TWTILLTGYAKEGRIEEARE----VFESMTERNVVSWNAMISGYVQNGDLKN 282

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           A+++F EM ++N  SW+++V G        EA ELF +M
Sbjct: 283 ARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQM 321


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 358/620 (57%), Gaps = 51/620 (8%)

Query: 46  ITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L  CAS  +    KQVH FS+R+G+ +++  +G  L+      S  M+ A+ +F  +
Sbjct: 238 VNILPACASVFALQHGKQVHGFSVRNGL-VDDVFVGNALVSMYAKCS-KMNEANKVFEGI 295

Query: 104 QDPNIFTWNTM-----------------------------------IRGYAESANPLLAV 128
           +  ++ +WN M                                   I GYA+  +   A+
Sbjct: 296 KKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEAL 355

Query: 129 ELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-------ESLVFVQ 181
           +++ +M + G++P+  T   LL   + +  +  G+QTH+  I+N         E  + V 
Sbjct: 356 DVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVL 415

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERD--LVAWNSVINGFASNGKPNEALTLFREMASE- 238
           N L+ MYA     + A  +F+ +  +D  +V W  +I G+A +G+ N+AL LF ++  + 
Sbjct: 416 NGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQK 475

Query: 239 -GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYSKCGIII 296
             ++P+ +T+     ACA LG L LGR+ H Y  +    S+ + V N L+D YSK G I 
Sbjct: 476 TSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDID 535

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA+ VF  M+ RN VSW++L+ G  ++G G+EAL LF +M+  GF    +TF+ VLYACS
Sbjct: 536 AARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACS 595

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GMVD+G  YF  M   +GI P  EH+ CMVDLLGRAG + +A E I+NM M P AV+W
Sbjct: 596 HSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVW 655

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LL A  IH +  + E A S L +L  ++ G Y LLSNLYA  +RW +V  +R  M   
Sbjct: 656 VALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHT 715

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            ++K PG S ++       FF+GDRSHP++E+I+ +L ++ K++K  GYVP+T     D+
Sbjct: 716 GIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDV 775

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           ++EEK D L  HSEK+A+A+ ++ TAPG P+R+ KNLR+C DCH A+  IS +   EIV+
Sbjct: 776 DDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVL 835

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD SRFHHFK G CSCR YW
Sbjct: 836 RDSSRFHHFKKGSCSCRSYW 855



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 193/382 (50%), Gaps = 22/382 (5%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           P+ S++R+C TL+   A   H+   VH F+      + +  +G Y+     + +  +   
Sbjct: 32  PLISLLRQCKTLIN--AKLAHQQIFVHGFT-----EMFSYAVGAYIECGASAEAVSL-LQ 83

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             I SH     +F WN +IR   +       +  Y +M   G  PD +T+PF+LKA  ++
Sbjct: 84  RLIPSH---STVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEI 140

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWN 213
             +R G   H++   NG  S VF+ NS+V MY   G + DA ++F+ + ER   D+V+WN
Sbjct: 141 PSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWN 200

Query: 214 SVINGFASNGKPNEALTLFREMA---SEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           S++  +   G+   AL +   M    S  + PD  T+V++  ACA + AL  G++ H + 
Sbjct: 201 SILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFS 260

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            + GL D+V V NAL+  Y+KC  +  A +VF  ++K++ VSW+ +V G +  G    AL
Sbjct: 261 VRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSAL 320

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            LFK M+        +T+  V+   +  G   E    F++M+  YG+ P +     ++  
Sbjct: 321 SLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLEPNVVTLASLLSG 379

Query: 391 LGRAGLV---KQAYEY-IQNML 408
               G +   KQ + Y I+N+L
Sbjct: 380 CASVGALLYGKQTHAYVIKNIL 401


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/593 (40%), Positives = 358/593 (60%), Gaps = 14/593 (2%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           SQE   +S  ++   LL +C   +  L    +VH   + +G    +P L   LI     L
Sbjct: 70  SQE---SSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSD-QDPFLATKLIGMYSDL 125

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              + YA  +F   +   I+ WN + R    + +    + LY KM+  G++ D  TY ++
Sbjct: 126 G-SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYV 184

Query: 150 LKAISK---LAD-VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           LKA       AD +  G++ H+   R G+ S V++  +LV MYA FG V  A  VF  M 
Sbjct: 185 LKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMP 244

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMVSLFSACAELGALALG 263
            R++V+W+++I  +A NGK  EAL  FREM +E  +  P+  TMVS+  ACA L AL  G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R  H Y+ + GL   + V +AL+  Y +CG +   QRVF  M  R+ VSW++L+    V+
Sbjct: 305 RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVH 364

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G+G++A+++F+EM   G  P  VTFV VL ACSH G+V+EG   F+ M  ++GI P++EH
Sbjct: 365 GYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEH 424

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           + CMVDLLGRA  + +A + +Q+M   P   +W +LLG+C IHG+  +AE A   L  LE
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           PK++G+YVLL+++YA  Q W  V+ V++ +    ++K PG   +E+  +++ F   D  +
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFN 544

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P  E+IHA L ++ + +K +GY+P+T+ V  ++E EEKE  +  HSEK+A+AF L+NT+ 
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSK 604

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           G P+R+ KNLR+C DCHL  K ISK   +EI+VRD +RFH FK+G CSC DYW
Sbjct: 605 GEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 9/241 (3%)

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++ N +I      GK  +AL +  + +S    P   T   L   C    +L+ G R H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +   G   +  +   L+  YS  G +  A++VF + RKR    W+ L   L + G G+E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK---DEYGIMPKIEHFGC 386
           L L+ +M   G      T+  VL AC       +  +  K +       G    +     
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           +VD+  R G V  A  Y+ N +   N V W  ++ AC      A   +     +  E K 
Sbjct: 223 LVDMYARFGCVDYA-SYVFNGMPVRNVVSWSAMI-ACYAKNGKAFEALRTFREMMTETKD 280

Query: 447 S 447
           S
Sbjct: 281 S 281


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 346/576 (60%), Gaps = 13/576 (2%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           +L+VCAS    +  + VH   +R G      DL  ++  A+V +      +  AH +F  
Sbjct: 138 VLKVCASELGAVFGEVVHGQVVRTGF---GSDL--FVEAALVDMYAKCGEIGDAHEVFDR 192

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           +   ++  W  MI  Y ++  PL A+ L+ KM   G   D  T   +  A+ +L D RM 
Sbjct: 193 MLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA 252

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
              H  A+ NGF   V V NS+V MYA  G+V+ A  VF+ M ER+ ++WNS+++G+  N
Sbjct: 253 ISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQN 312

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+P +AL+LF +M +   +P+  T + + SAC+ LG+  LGR+ H +V    +  +  + 
Sbjct: 313 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLR 372

Query: 283 NALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           NA++D Y KCG +  A  +F   E+ +R+  SW+ L+ G  V+G GKEALELF  M++ G
Sbjct: 373 NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG 432

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P ++TF  +L ACSH G++DEG   F  M  +  + P+++H+ CMVD+LGRAG + +A
Sbjct: 433 VEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEA 491

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           +  I+ +   P+  +W  LL AC IHG++ + EIA + L QLEP+H+G YVL+SN+YA  
Sbjct: 492 FRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAAS 551

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W  V+ VR+ M    +KK    S++E G  V  F   D+S P   E++  +  +  ++
Sbjct: 552 NKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEM 611

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K+ GYVP    V  D+E E+KE  L+YHSEK+A+AF ++    G P++V KNLRVC+DCH
Sbjct: 612 KMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCH 671

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A K IS +Y R+I+VRD +RFHHF+ G CSC DYW
Sbjct: 672 WAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 199/413 (48%), Gaps = 22/413 (5%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH----- 102
           LLQ C +S   LK +H+     G  L+ P     LI     L   +  A  +F H     
Sbjct: 31  LLQ-CCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLG-DLHSARTLFDHRHHHH 88

Query: 103 ---VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
               Q PN F  NTM+R YA +     A++LY  M   G+  +  TYPF+LK  +     
Sbjct: 89  HGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGA 148

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             GE  H   +R GF S +FV+ +LV MYA  G + DA +VF+ M  RD+V W ++I  +
Sbjct: 149 VFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
               +P +AL LFR+M  EG   D  T +S+ SA  +LG   +    H Y    G   +V
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDV 268

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V N+++  Y+KCG +  A+ VF  M +RN +SW++++ G   NG   +AL LF +M+  
Sbjct: 269 SVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 328

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE----HFGCMVDLLGRAG 395
              P  VT + ++ ACS+ G       +  R    + I  K++        ++D+  + G
Sbjct: 329 ECDPNPVTALIMVSACSYLGS-----KHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCG 383

Query: 396 LVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPK 445
            +  A E   N  L   +   W  L+    +HGH   A+   +R  +  +EP 
Sbjct: 384 DLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPN 436


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 330/521 (63%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ TWN M+ G  +       + L+S+M+  G  PD      +L+  + 
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAG 196

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G Q H    + GFE  + V +SL HMY   G + +  ++   M  +++VAWN++
Sbjct: 197 LRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P E L  +  M   G  PD  T VS+ S+C+EL  L  G++ H  V K G 
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA 316

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V+V ++L+  YS+CG +  + +VF E    + V WS+++     +G G EA++LF +
Sbjct: 317 SLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQ 376

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME       +VTF+ +LYACSHCG+ ++G  +F  M ++YG+ P++EH+ CMVDLLGR G
Sbjct: 377 MEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYG 436

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            V++A   I++M +  + + W+TLL AC IH  + +A      + +L+P+    YVLLSN
Sbjct: 437 SVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSN 496

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A ++RW +V +VR+ M   ++KK PG S +E+ N++ +F MGD+SHP++ EI + L E
Sbjct: 497 IHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRE 556

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T ++K  GYVP  ++V  D++ E+KE +L +HSEK+AIAF L+ T  GTP+RV+KNLRV
Sbjct: 557 LTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRV 616

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C+DCH+AIK IS++ +REI+VRD SRFHHFK+G CSC DYW
Sbjct: 617 CSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 161/356 (45%), Gaps = 40/356 (11%)

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           S I  +   +  LL++      + +G+Q HS+ I +G  S  F+ N L+++Y+  G +  
Sbjct: 46  SHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDT 105

Query: 197 AC-------------------------------KVFELMSERDLVAWNSVINGFASNGKP 225
           A                                K+F+ M ER++  WN+++ G       
Sbjct: 106 AITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFN 165

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            E L LF  M   G  PD + + S+   CA L AL  GR+ H YV K G   N+ V ++L
Sbjct: 166 EEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSL 225

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
              Y KCG +   +R+ R M  +N V+W+TL+ G A NG+ +E L+ +  M++ GF P +
Sbjct: 226 AHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDK 285

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           +TFV V+ +CS    + +G      +  + G    +     ++ +  R G +    EY  
Sbjct: 286 ITFVSVISSCSELATLGQGQQIHAEVI-KAGASLIVSVISSLISMYSRCGCL----EYSL 340

Query: 406 NMLMP---PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            + +     + V W +++ A   HG   +  I     ++ E   + D   LS LYA
Sbjct: 341 KVFLECENGDVVCWSSMIAAYGFHGR-GVEAIDLFNQMEQEKLEANDVTFLSLLYA 395


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/564 (40%), Positives = 350/564 (62%), Gaps = 10/564 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+H  +IR G+  ++P     L++     S P+  A   F  +  PN      M  GY 
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPID-ARKAFDEIPSPNPVIITAMASGYV 167

Query: 120 ESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +     ++ L+ K+  SG     D         A +++ D  +    H++ ++ G +  
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 178 VFVQNSLVHMYAAFGH--VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             V N+++  YA  G   +  A KVF+ M E+D+V+WNS+I  +A NG   +AL L+R+M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 236 --ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
              S  ++ +  T+ ++  ACA  G +  G+  H  V ++GL +NV V  +++D YSKCG
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A++ F++++++N +SWS ++ G  ++G G+EAL++F EM   G  P  +TF+ VL 
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLA 406

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G++D+G  ++  MK  +GI P +EH+GCMVDLLGRAG + +AY  I+ M + P+A
Sbjct: 407 ACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 466

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            IW  LL AC IH +  +AEI+   L +L+  + G YVLLSN+YA    W +V+ +R  +
Sbjct: 467 AIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMR-VL 525

Query: 474 VKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           VK R ++K PG+S VEL  R   F++GD+SHPQ +EI++ L ++ +K++  GYVP T +V
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             D++EEEK  AL  HSEK+AIAF L+N+ PG+ + V+KNLRVC DCH AIKLI+K+  R
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EI+VRD  RFHHFKDG CSC DYW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 10/274 (3%)

Query: 162 GEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           G Q H +AIR+G F S  F  ++L+HMY       DA K F+ +   + V   ++ +G+ 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 221 SNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            N     +L LFR++ + G     D    +  FSA A +    +    H  V K GL  +
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 279 VNVNNALLDFYSKCG--IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
             V N +LD Y+K G   + AA++VF  M K + VSW++++   A NG   +AL L+++M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 337 -EIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
             + G +    VT   +L AC+H G +  G     ++    G+   +     +VD+  + 
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVV-RMGLEENVYVGTSVVDMYSKC 345

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           G V+ A +  Q  +   N + W  ++    +HGH
Sbjct: 346 GRVEMARKAFQK-IKEKNILSWSAMITGYGMHGH 378


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/604 (39%), Positives = 353/604 (58%), Gaps = 21/604 (3%)

Query: 22  RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           R  SLY   P     P    ++ C +L  +  S K   +Q   F  +  + +++      
Sbjct: 68  RKLSLY---PTRSSFPCA--IKACSSLFDI-FSGKQTHQQAFVFGYQSDIFVSSA----- 116

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
            +  + S    +  A  +F  +   NI +W +MIRGY  + N L AV L+  + V     
Sbjct: 117 -LIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDD 175

Query: 142 DTHTY------PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH-- 193
           D   +        ++ A S++    + E  HS  I+ GF+  V V N+L+  YA  G   
Sbjct: 176 DDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP-DGYTMVSLFS 252
           V  A K+F+ + ++D V++NS+++ +A +G  NEA  +FR +    V   +  T+ ++  
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLL 295

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           A +  GAL +G+  H  V ++GL D+V V  +++D Y KCG +  A++ F  M+ +N  S
Sbjct: 296 AVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRS 355

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ ++ G  ++G   +ALELF  M   G  P  +TFV VL ACSH G+  EG+ +F  MK
Sbjct: 356 WTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMK 415

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             +G+ P +EH+GCMVDLLGRAG +++AY+ IQ M M P+++IW +LL AC IH +  +A
Sbjct: 416 GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           EI+ + L +L+  + G Y+LLS++YA   RW +V+ VR  M    + K PG SL+EL   
Sbjct: 476 EISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGE 535

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
           V  F +GD  HPQ E+I+  LAE+ +KL   GYV  T +V  D++EEEKE  L  HSEK+
Sbjct: 536 VHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL 595

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AIAF ++NT PG+ V VVKNLRVC+DCH  IKLISK+  RE VVRD  RFHHFKDG CSC
Sbjct: 596 AIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSC 655

Query: 613 RDYW 616
            DYW
Sbjct: 656 GDYW 659



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 182/345 (52%), Gaps = 21/345 (6%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   ++F+WN++I   A S +   A+  +S M    + P   ++P  +KA S L D+  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+QTH  A   G++S +FV ++L+ MY+  G ++DA KVF+ + +R++V+W S+I G+  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 222 NGKPNEALTLFREM------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           NG   +A++LF+++        + +  D   +VS+ SAC+ + A  L    H++V K G 
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF 214

Query: 276 SDNVNVNNALLDFYSKCGI--IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
              V+V N LLD Y+K G   +  A+++F ++  ++ VS+++++   A +G   EA E+F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVF 274

Query: 334 KEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKR-----MKDEYGIMPKIEHFGCM 387
           + +     V    +T   VL A SH G +  G     +     ++D+  +   I    C 
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
               GR    ++A++ ++N     N   W  ++    +HGH+A A
Sbjct: 335 C---GRVETARKAFDRMKN----KNVRSWTAMIAGYGMHGHAAKA 372


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 350/558 (62%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K+VHA++I+  +  ++  +G  L+   +   + + Y+ ++F  ++  +  +W T+I  YA
Sbjct: 386 KEVHAYAIKQRLD-SDTQVGNTLMDMYMKCRY-IEYSAHVFDRMRIKDHISWTTIITCYA 443

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +S+  + A+E++ +    GIK D      +L+A S L  + + +Q H  AIRNG   LV 
Sbjct: 444 QSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLV- 502

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V+N ++ +Y   G V  + K+FE + ++D+V W S+IN +A++G  NEAL LF EM S  
Sbjct: 503 VKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTD 562

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V+PD   +VS+  A   L +LA G+  H ++ +        + ++L+D YS CG +  A 
Sbjct: 563 VQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGAL 622

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF  ++ ++ V W+ ++    ++G GK+A++LFK M   G  P  V+F+ +LYACSH  
Sbjct: 623 KVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSK 682

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG  Y   M   Y + P  EH+ C+VDLLGR+G  ++AYE+I++M + P +V+W +L
Sbjct: 683 LVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSL 742

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC +H +  +A +A + LL+LEP + G+YVL+SN++A   +W N +EVR  + +  ++
Sbjct: 743 LGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLR 802

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEE 538
           K P  S +E+GN V  F   D SH   E I+  LAEIT++L+ E GY   T +V  D+ E
Sbjct: 803 KDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSE 862

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK D L  HSE++AI+F L+NT PG P+R+ KNLRVC DCH   KL+SK++ R+IVVRD
Sbjct: 863 EEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRD 922

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFHHF  G CSC D+W
Sbjct: 923 ANRFHHFSGGSCSCGDFW 940



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 61  QVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           QVHA ++  G  L   D  L   L++ +      ++ A  +F  +    +F+WN +I  Y
Sbjct: 79  QVHAHAVATG-SLEGDDGFLATKLLF-MYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 119 AESANPLLAVELYSKMHVS---GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
             S +   A+ +Y  M +S   G+ PD  T   +LKA     D R G + H +A+++G +
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLD 196

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTLFRE 234
              FV N+L+ MYA  G +  A +VFELM + RD+ +WNS+I+G   NG   +AL LFR 
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRG 256

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M    +  + YT V +   C EL  L LGR  H  + K G   N+   NALL  Y+KCG 
Sbjct: 257 MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGR 315

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + +A RVFRE+ +++ +SW++++     NG   EA+E   EM  GGF P     V +  A
Sbjct: 316 VDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375

Query: 355 CSHCGMVDEG 364
             H G +  G
Sbjct: 376 VGHLGWLLNG 385



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 204/410 (49%), Gaps = 46/410 (11%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDP-NIFTWNTMIR 116
           +VH  +++HG+     D   ++  A++++      +  A  +F  + D  ++ +WN+MI 
Sbjct: 185 EVHGLAVKHGL-----DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMIS 239

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G  ++   L A++L+  M  + +  +++T   +L+  ++LA + +G + H+  +++G E 
Sbjct: 240 GCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE- 298

Query: 177 LVFVQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
            V +Q N+L+ MY   G V  A +VF  + E+D ++WNS+++ +  NG   EA+    EM
Sbjct: 299 -VNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEM 357

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
              G +PD   +VSL SA   LG L  G+  H Y  K  L  +  V N L+D Y KC  I
Sbjct: 358 LRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYI 417

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             +  VF  MR ++ +SW+T++   A +    EALE+F+E +  G     +    +L AC
Sbjct: 418 EYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEAC 477

Query: 356 S-----------HCGMVDEGFSYF---KRMKDEYGIMPKIEH---------------FGC 386
           S           HC  +  G        R+ D YG   ++ H               +  
Sbjct: 478 SGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTS 537

Query: 387 MVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           M++    +GL+ +A   +  +Q+  + P++V   ++LGA  I G S++A+
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA--IGGLSSLAK 585



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 24/400 (6%)

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           T ++   +  N   A+ L +     G  P    Y ++L  ++    V  G Q H+ A+  
Sbjct: 29  TSLKQLCKEGNLRQALRLLTS-QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVAT 87

Query: 173 GFESLV----FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           G  SL     F+   L+ MY   G V DA  +F+ MS R + +WN++I  + S+G   EA
Sbjct: 88  G--SLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEA 145

Query: 229 LTLFREM---ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
           L ++R M   A+ GV PDG T+ S+  A    G    G   H    K GL  +  V NAL
Sbjct: 146 LGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANAL 205

Query: 286 LDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +  Y+KCGI+ +A RVF  M   R+  SW++++ G   NG   +AL+LF+ M+       
Sbjct: 206 IAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMN 265

Query: 345 EVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             T VGVL  C+    ++ G   +   +K    +  +      M    GR     + +  
Sbjct: 266 SYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFRE 325

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQ 461
           I       + + W ++L     +G  A A    S +L+   +P H+   V LS+   +  
Sbjct: 326 IDE----KDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHAC-IVSLSSAVGHLG 380

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
             LN +EV    +K+R+      S  ++GN + + +M  R
Sbjct: 381 WLLNGKEVHAYAIKQRLD-----SDTQVGNTLMDMYMKCR 415


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/594 (40%), Positives = 348/594 (58%), Gaps = 43/594 (7%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
            ++H  P S E     ++R          +S  +L+QVHA  I+   PL+   L +  + 
Sbjct: 18  QIHHVKPQSSETLKIDLLRN--------FNSPFELRQVHAQIIKTNAPLSILPLTRVGLV 69

Query: 85  AIVSLSFPMSYAHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
              + SF   YA  IF  V  Q P  F WN+ ++  AE  +P+ A+ L+ ++    + PD
Sbjct: 70  CAFTPSF--HYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPD 127

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
           T T   +L+A   L D+  G   H V  + GF S +++QN +VH+YA+ G + +A  +FE
Sbjct: 128 TFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFE 187

Query: 203 LMSERDLVAWN-------------------------------SVINGFASNGKPNEALTL 231
            M +RD+V WN                               S+I G+   GK  EA+ L
Sbjct: 188 KMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHL 247

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F +M   GV+ +  T+V++ +ACA+LGAL LG R H Y  + G   NV ++N L+D Y K
Sbjct: 248 FAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVK 307

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A +VF EM +R  VSWS ++ GLA++G  +EAL LF +M   G  P  VTF+G+
Sbjct: 308 CGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGL 367

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L+ACSH G++ EG  +F  M  +YGI+P+IEH+GCMVDLL RAGL+ +A+E+I NM M P
Sbjct: 368 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKP 427

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           N V+W  LLGAC +H +  +AE A   LL+L+P + G YV+LSN+YA   RW +   VR+
Sbjct: 428 NGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRK 487

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M   +VKKTPG S + +   V EF  G+ SHP TE+I     E+ ++++L+GYVP T  
Sbjct: 488 FMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSV 547

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           V  DIEE EK   +S HSEK+A+ F L+NT   TP+R++KNLR+C DCH A ++
Sbjct: 548 VLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFQI 601


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/665 (36%), Positives = 375/665 (56%), Gaps = 61/665 (9%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHA 64
           H K  +     DL   + ++ H    ++ + I S+V     +L  CAS K   + K++H+
Sbjct: 228 HVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV----NILPACASLKALPQTKEIHS 283

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
           ++IR+G    +  +   LI         M  A N+F+ ++  ++ +WN M+ GY +S   
Sbjct: 284 YAIRNGT-FADAFVCNALIDTYAKCG-SMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKF 341

Query: 125 LLAVELYSKMH-----------------------------------VSGIKPDTHTYPFL 149
             A EL+  M                                    + G +P++ T   L
Sbjct: 342 GAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISL 401

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESL------------VFVQNSLVHMYAAFGHVKDA 197
           L A + L  +  G +TH+ +++    SL            + V N+L+ MY+     K A
Sbjct: 402 LSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 198 CKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSA 253
             +F  +   ER++V W  +I G+A  G  N+AL LF EM S+   V P+ YT+  +  A
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 254 CAELGALALGRRAHTYVWK--VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           CA L +L +G++ H YV +     S    V N L+D YSKCG +  A+ VF  M KRN V
Sbjct: 522 CAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEV 581

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW++++ G  ++G GKEAL++F +M+  GFVP +++F+ +LYACSH GMVD+G  YF  M
Sbjct: 582 SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIM 641

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
           + +YG++   +H+ C++DLL R+G + +A++ IQ M M P+A IW  LL AC +H +  +
Sbjct: 642 RSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVEL 701

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
           AE A + L+ ++ ++ G Y L+SN+YA  +RW +V  +R+ M K  +KK PG S V+   
Sbjct: 702 AEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKK 761

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
               FF+GDRSHP + EI+++L  +  ++K+ GYVP T     D+++EEK + L+ HSEK
Sbjct: 762 GTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEK 821

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+A+ L+ T+PG P+R+ KNLRVC DCH A   ISK+   EI+VRD SRFHHFK+G CS
Sbjct: 822 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCS 881

Query: 612 CRDYW 616
           C  YW
Sbjct: 882 CGGYW 886



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 151/307 (49%), Gaps = 45/307 (14%)

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           V  P ++ WN ++R + E      A+ +  +M  +G KPD  T P+ LKA  +L   R G
Sbjct: 110 VPSPAVW-WNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSG 168

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSVINGF 219
              H +   NGFES VFV N+LV MY+  G ++DA  VF+ ++ +   D+++WNS++   
Sbjct: 169 SAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAH 228

Query: 220 ASNGKPNEALTLFREMAS------EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
                P  AL LF EM +           D  ++V++  ACA L AL   +  H+Y  + 
Sbjct: 229 VKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRN 288

Query: 274 GLSDNVNVNNALLDFYSKCGIII-------------------------------AAQRVF 302
           G   +  V NAL+D Y+KCG +                                AA  +F
Sbjct: 289 GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELF 348

Query: 303 REMRKRN----AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + MRK N     ++WS ++ G A  G+G+EAL+ F++M + G  P  VT + +L AC+  
Sbjct: 349 KNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASL 408

Query: 359 GMVDEGF 365
           G + +G 
Sbjct: 409 GALSQGM 415



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 124/315 (39%), Gaps = 44/315 (13%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V  Y A G   DA  V E +     V WN ++      G+ + A+ +   M   G +PD
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+     AC EL +   G   H  +   G   NV V NAL+  YS+ G +  A  VF 
Sbjct: 149 HFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFD 208

Query: 304 EMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEM------EIGGFVPGEVTFVGVLYA 354
           E+ ++   + +SW+++V         + AL+LF EM      +        ++ V +L A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPA 268

Query: 355 CSH-------------------------CGMVDEGFSYFKRMKDEYGIMPKIE-----HF 384
           C+                          C  + + ++    MKD   +   +E      +
Sbjct: 269 CASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSW 328

Query: 385 GCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLG--ACTIHGHSAIAEIARSTL 439
             MV    ++G    A+E  +NM    +P + + W  ++   A   +G  A+    +  L
Sbjct: 329 NAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMIL 388

Query: 440 LQLEPKHSGDYVLLS 454
              EP       LLS
Sbjct: 389 YGSEPNSVTIISLLS 403


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/521 (41%), Positives = 325/521 (62%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ N+ +W+ MI  Y        A++L+  M  SG+ PD  T   LL A S 
Sbjct: 185 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSD 244

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L +++MG   H +  + G +   FV  +LV MY     ++DA  +F+ M ERDLV W  +
Sbjct: 245 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVM 304

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G  NE+L LF +M  EGV PD   MV++  ACA+LGA+   R    Y+ +   
Sbjct: 305 IGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF 364

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V +  A++D ++KCG + +A+ +F  M ++N +SWS ++     +G G++AL+LF  
Sbjct: 365 QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 424

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G +P ++T V +LYACSH G+V+EG  +F  M ++Y +   ++H+ C+VDLLGRAG
Sbjct: 425 MLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAG 484

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I++M +  +  +W   LGAC  H    +AE A ++LL+L+P++ G Y+LLSN
Sbjct: 485 RLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSN 544

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +V + R  M + R+KK PG + +E+ N+  +F +GD +HP+++EI+ ML  
Sbjct: 545 IYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKS 604

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  KL+L GYVP T  V  D++EE K   L  HSEK+AIAF L+ T   TP+R++KNLRV
Sbjct: 605 LGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRV 664

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   KL+S +  R I+VRD +RFHHFK+G CSC DYW
Sbjct: 665 CGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 174/311 (55%), Gaps = 6/311 (1%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           M+ G+A+  + +     + ++   G +PD +T PF+++A   L +++MG   H +  + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
            +   FV  +LV MY     ++DA  +F+ M ERDLV W  +I G+A  GK NE+L LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           +M  EGV PD   MV++  ACA+LGA+   R    Y+ +     +V +  A++D Y+KCG
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            + +A+ +F  M ++N +SWS ++     +G G++AL+LF+ M   G +P ++T   +LY
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPP 411
           ACS    +  G      +  ++G+   ++HF C  +VD+ G+   ++ A  ++ + +   
Sbjct: 241 ACSDLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDA-RFLFDKMPER 296

Query: 412 NAVIWRTLLGA 422
           + V W  ++G 
Sbjct: 297 DLVTWTVMIGG 307



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 188/369 (50%), Gaps = 11/369 (2%)

Query: 67  IRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIRGYAESAN 123
           I H V     DL  ++  A+V +      +  A  +F  +Q+ ++ TW  MI GYAE   
Sbjct: 52  IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 111

Query: 124 PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
              ++ L+ KM   G+ PD      ++ A +KL  +           R  F+  V +  +
Sbjct: 112 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 171

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           ++ MYA  G V+ A ++F+ M E+++++W+++I  +  +G+  +AL LFR M S G+ PD
Sbjct: 172 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 231

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
             T+ SL  AC++L  L +GR  H  V+K GL  +  V  AL+D Y KC  I  A+ +F 
Sbjct: 232 KITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFD 291

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           +M +R+ V+W+ ++ G A  G   E+L LF +M   G VP +V  V V++AC+  G + +
Sbjct: 292 KMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK 351

Query: 364 GFS---YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
             +   Y +R K +  ++        M+D+  + G V+ A E    M    N + W  ++
Sbjct: 352 ARTIDDYIQRKKFQLDVILGTA----MIDMHAKCGCVESAREIFDRM-EEKNVISWSAMI 406

Query: 421 GACTIHGHS 429
            A   HG  
Sbjct: 407 AAYGYHGQG 415


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 326/542 (60%), Gaps = 37/542 (6%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR----MGEQTHS 167
           + +IR  + SA P LA+ LY+ +  +G+ P  HT P LLK+++    V     +    H+
Sbjct: 41  DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100

Query: 168 VAIRNGFESLVFVQNSLVHMYAAF--------------------------------GHVK 195
            A++ G +  V V N+L+ ++A F                                G + 
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLA 160

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           DA  +F+ M  R+ V+W++++NG+   G   EAL +F  M +E V PD   +V + +ACA
Sbjct: 161 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           + GAL  G+  H Y+   G+  N+    AL+D YSKCG +  A  VF  M+ +N ++W+T
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ GLA++G G EA+ LF +ME  G  P ++ F+GVL AC+H G+VD+G   F  M  +Y
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           GI PKIEH+GCMVDLL R G + +A E IQ M M P+A+IW  L+  C  H +   AE  
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYV 400

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
               + LEP  SG YVLLSN+YA   R  + +E+R  M ++ V KTPG S VE+   + +
Sbjct: 401 AKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQ 460

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKL-EGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           F +GD SHP+ ++I +   EI  +++L EGY+P  + V  DIEEEEKE ALS HSEK+AI
Sbjct: 461 FIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAI 520

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF L++ +   P+R+ KNLRVC DCH   KLISKVY REIVVRDR+RFH FK+G CSC+D
Sbjct: 521 AFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKD 580

Query: 615 YW 616
           YW
Sbjct: 581 YW 582



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   N  +W+ M+ GY ++ +   A+ ++++M    ++PD      +L A
Sbjct: 159 LADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAA 218

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++   +  G+  H     +G +  +F   +LV MY+  G V+ A  VFE M  ++++AW
Sbjct: 219 CAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAW 278

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
            ++I G A +G+ +EA+ LF +M S G+ PD    + +  AC   G +  GR    + V 
Sbjct: 279 TTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVR 338

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVG 319
           K G+   +     ++D  ++ G +  A+ + ++M  + +A+ W  L+ G
Sbjct: 339 KYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 344/581 (59%), Gaps = 25/581 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+ +R+   + N  +G  L+    +    +     +F H+    I  WN MI GYA
Sbjct: 317 KEIHAYVLRNNDLIENSFVGSALVDMYCNCR-QVESGRRVFDHILGRRIELWNAMISGYA 375

Query: 120 ESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +     A+ L+ +M  V+G+ P+T T   ++ A          E  H  A++ GF+   
Sbjct: 376 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDR 435

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--- 235
           +VQN+L+ MY+  G +  +  +F+ M  RD V+WN++I G+  +G+ + AL L  EM   
Sbjct: 436 YVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRM 495

Query: 236 --------------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                              +P+  T++++   CA L A+A G+  H Y  +  L+ ++ V
Sbjct: 496 ENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITV 555

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM----- 336
            +AL+D Y+KCG +  ++RVF EM  +N ++W+ L++   ++G G+EALELFK M     
Sbjct: 556 GSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAG 615

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
             G   P EVTF+ V  ACSH G++ EG + F RMK ++G+ P  +H+ C+VDLLGRAG 
Sbjct: 616 RGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQ 675

Query: 397 VKQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           +++AYE +  M    + V  W +LLGAC IH +  + E+A   LL LEP  +  YVLLSN
Sbjct: 676 LEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSN 735

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+    W    EVR+ M +  VKK PG S +E  + V +F  GD SHPQ+E++H  L  
Sbjct: 736 IYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLET 795

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +++K++ EGYVP T  V  +++E+EKE+ L  HSEK+AIAF ++NT PGT +RV KNLRV
Sbjct: 796 LSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRV 855

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 856 CNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 143/259 (55%), Gaps = 5/259 (1%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +W   +R    S +   A+  Y +M VSG +PD   +P +LKA+S L D++ GEQ H+ A
Sbjct: 59  SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118

Query: 170 IRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           ++ G+  S V V N+LV+MY   G + D CKVF+ +++RD V+WNS I       K  +A
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQA 178

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELG---ALALGRRAHTYVWKVGLSDNVNVNNAL 285
           L  FR M  E +E   +T+VS+  AC+ LG    L LG++ H Y  +VG       NNAL
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNAL 237

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +  Y+K G +  ++ +F     R+ VSW+T++   + +    EAL  F+ M + G     
Sbjct: 238 MAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDG 297

Query: 346 VTFVGVLYACSHCGMVDEG 364
           VT   VL ACSH   +D G
Sbjct: 298 VTIASVLPACSHLERLDVG 316



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 11/312 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+HA +++ G   ++  +   L+  +      +     +F  + D +  +WN+ I    
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLV-NMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALC 170

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRNGFES 176
                  A+E +  M +  ++  + T   +  A S L     +R+G+Q H  ++R G + 
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQ 229

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F  N+L+ MYA  G V D+  +FE   +RD+V+WN++I+ F+ + + +EAL  FR M 
Sbjct: 230 KTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV 289

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGII 295
            EGVE DG T+ S+  AC+ L  L +G+  H YV +   L +N  V +AL+D Y  C  +
Sbjct: 290 LEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
            + +RVF  +  R    W+ ++ G A NG  ++AL LF EM ++ G +P   T   V+ A
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 409

Query: 355 CSHCGMVDEGFS 366
           C HC    E FS
Sbjct: 410 CVHC----EAFS 417



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           R   +W   +     +    EA++ + EM   G  PD +   ++  A + L  L  G + 
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 267 HTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
           H    K G  S +V V N L++ Y KCG I    +VF  +  R+ VSW++ +  L     
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
            ++ALE F+ M++        T V V  ACS+ G++
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM 210


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 351/559 (62%), Gaps = 3/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           LK++H +S++     N  +L      A  +    +SYA  +F  ++   + +WN +I G+
Sbjct: 164 LKELHCYSLKQEFVYN--ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 221

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A+S +P L+++ + +M +SG+ PD+ T   LL A SKL  +R+G++ H   IRN  E  +
Sbjct: 222 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 281

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  S++ +Y   G +     +F+ M ++ LV+WN+VI G+  NG P+ AL +FR+M   
Sbjct: 282 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 341

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++  G +M+ +F AC+ L +L LGR AH Y  K  L D+  +  +L+D Y+K G I  +
Sbjct: 342 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 401

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  +++++  SW+ +++G  ++G  KEA++LF+EM+  G  P ++TF+GVL AC+H 
Sbjct: 402 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 461

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI-QNMLMPPNAVIWR 417
           G++ EG  Y  +MK  +G+ P ++H+ C++D+LGRAG + +A   + + M    +  IW+
Sbjct: 462 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 521

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL +C IH +  + E   + L +LEP+   +YVLLSNLYA   +W +V++VR+ M +  
Sbjct: 522 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 581

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           ++K  G S +EL  +VF F +G+R     EEI ++ + +  K+   GY P T +V  D+ 
Sbjct: 582 LRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLS 641

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEK + L  HSEK+A+ + L+ T+ GT +RV KNLR+C DCH A KLISKV  REIVVR
Sbjct: 642 EEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVR 701

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHFK+G CSC DYW
Sbjct: 702 DNKRFHHFKNGVCSCGDYW 720



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 189/404 (46%), Gaps = 36/404 (8%)

Query: 42  VRKCITLLQVCASSKH--KLKQVHAFSIR----HGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           V   +T+L VCA  +     K VH ++++      + LNN  +  Y      S    ++ 
Sbjct: 42  VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY------SKCGCITN 95

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAI 153
           A  IF    + N+ +WNTM+ G++   +     ++  +M   G  +K D  T   +L A+
Sbjct: 96  AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT---ILNAV 152

Query: 154 ------SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
                 S L  ++   + H  +++  F     V N+ V  YA  G +  A +VF  +  +
Sbjct: 153 PVCFHESFLPSLK---ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK 209

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
            + +WN++I G A +  P  +L    +M   G+ PD +T+ SL SAC++L +L LG+  H
Sbjct: 210 TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH 269

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            ++ +  L  ++ V  ++L  Y  CG +   Q +F  M  ++ VSW+T++ G   NGF  
Sbjct: 270 GFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPD 329

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH---F 384
            AL +F++M + G     ++ + V  ACS    +  G     R    Y +   +E     
Sbjct: 330 RALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG-----REAHAYALKHLLEDDAFI 384

Query: 385 GC-MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            C ++D+  + G + Q+ + + N L   +   W  ++    IHG
Sbjct: 385 ACSLIDMYAKNGSITQSSK-VFNGLKEKSTASWNAMIMGYGIHG 427



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 8/257 (3%)

Query: 107 NIFTWNTMIR-----GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           N  +WN+MIR     G++E +  LL  E+  +       PD  T   +L   ++  ++ +
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLG-EMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  H  A++   +  + + N+L+ MY+  G + +A  +F++ + +++V+WN+++ GF++
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 222 NGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            G  +    + R+M    E V+ D  T+++    C     L   +  H Y  K     N 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NA +  Y+KCG +  AQRVF  +R +   SW+ L+ G A +   + +L+   +M+I 
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 340 GFVPGEVTFVGVLYACS 356
           G +P   T   +L ACS
Sbjct: 241 GLLPDSFTVCSLLSACS 257



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVE----PDGYTMVSLFSACAELGALAL 262
           R+ V+WNS+I  F+ NG   E+  L  EM  E  +    PD  T+V++   CA    + L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+  H +  K+ L   + +NNAL+D YSKCG I  AQ +F+    +N VSW+T+V G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 323 NGFGKEALELFKEMEIGG--FVPGEVTFVGVLYACSH 357
            G      ++ ++M  GG      EVT +  +  C H
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 343/579 (59%), Gaps = 6/579 (1%)

Query: 38   ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
            + SV+R C +L        +   Q+HA +++ GV L++       +  + S    M  A 
Sbjct: 1039 VASVLRACSSL----EGGYYLATQIHACAMKAGVVLDS--FVSTALIDVYSKRGKMEEAE 1092

Query: 98   NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
             +F +    ++ +WN ++ GY  S +   A+ LY  M  SG + D  T     KA   L 
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLV 1152

Query: 158  DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
             ++ G+Q H+V ++ GF   +FV + ++ MY   G ++ A +VF  +   D VAW ++I+
Sbjct: 1153 GLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMIS 1212

Query: 218  GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            G   NG+   AL  + +M    V+PD YT  +L  AC+ L AL  GR+ H  + K+  + 
Sbjct: 1213 GCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAF 1272

Query: 278  NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            +  V  +L+D Y+KCG I  A+ +F+    R   SW+ ++VGLA +G  KEAL+ FK M+
Sbjct: 1273 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMK 1332

Query: 338  IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
              G +P  VTF+GVL ACSH G+V E +  F  M+  YGI P+IEH+ C+VD L RAG +
Sbjct: 1333 SRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRI 1392

Query: 398  KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            ++A + I +M    +A ++RTLL AC +       +     LL LEP  S  YVLLSN+Y
Sbjct: 1393 EEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVY 1452

Query: 458  AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
            A   +W NV   R  M K  VKK PG S V+L N+V  F  GDRSH +T+ I+  +  I 
Sbjct: 1453 AAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIM 1512

Query: 518  KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K+++ EGYVP T+    D+EEE+KE +L YHSEK+AIA+ L+ T P T +RV+KNLRVC 
Sbjct: 1513 KRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCG 1572

Query: 578  DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIK ISKV+ REIV+RD +RFHHF++G CSC DYW
Sbjct: 1573 DCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 169/353 (47%), Gaps = 20/353 (5%)

Query: 86   IVSLSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
            I+ L    +YA  +F +  D  ++  WN  +  + +      AV+ +  M  S +  D  
Sbjct: 877  ILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGL 936

Query: 145  TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
            T+  +L  ++ L  + +G+Q H + +R+G + +V V N L++MY   G V  A  VF  M
Sbjct: 937  TFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQM 996

Query: 205  SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL-GALALG 263
            +E DL++WN++I+G   +G    ++ +F  +  + + PD +T+ S+  AC+ L G   L 
Sbjct: 997  NEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLA 1056

Query: 264  RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
             + H    K G+  +  V+ AL+D YSK G +  A+ +F      +  SW+ ++ G  V+
Sbjct: 1057 TQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVS 1116

Query: 324  GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
            G   +AL L+  M+  G    ++T V    A         G    K+ K  + ++ K   
Sbjct: 1117 GDFPKALRLYILMQESGERSDQITLVNAAKAAG-------GLVGLKQGKQIHAVVVK--- 1166

Query: 384  FGCMVDLLGRAGLVK--------QAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             G  +DL   +G++         ++   + + +  P+ V W T++  C  +G 
Sbjct: 1167 RGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQ 1219



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%)

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           +R    +ANPL       + H+    P    +  L +AI+  +D+ +G++ H+  + +G 
Sbjct: 636 LRAATSTANPLTP-----RAHLIHSLP--QCFSILRQAIAA-SDLSLGKRAHARILTSGH 687

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNG-KPNEALTL 231
               FV N+L+ MYA  G +  A K+F+    + RDLV WN++++  A++  K ++   L
Sbjct: 688 HPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHL 747

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FR +    V    +T+  +F  C    + +     H Y  K+GL  +V V  AL++ Y+K
Sbjct: 748 FRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAK 807

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
            G+I  A+ +F  M  R+ V W+ ++          EA+ LF E    GF P +VT 
Sbjct: 808 FGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 171/415 (41%), Gaps = 60/415 (14%)

Query: 33   SQENPITS------VVRKCITLL-QVCASSKHKL-KQVHAFSIRHGVPLNNPDLGKYLIY 84
            S  NP+T        + +C ++L Q  A+S   L K+ HA  +  G   ++PD  +++  
Sbjct: 641  STANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSG---HHPD--RFVTN 695

Query: 85   AIVSL---SFPMSYAHNIFSHVQDPN--IFTWNTMIRGYAESANPL-LAVELYSKMHVSG 138
             ++++      +S A  +F    D N  + TWN ++   A  A+       L+  +  S 
Sbjct: 696  NLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSV 755

Query: 139  IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
            +    HT   + K     A     E  H  A++ G +  VFV  +LV++YA FG +++A 
Sbjct: 756  VSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREAR 815

Query: 199  KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
             +F+ M+ RD+V WN ++  +       EA+ LF E    G  PD  T+ +L        
Sbjct: 816  VLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKK 875

Query: 259  ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
             +   ++   Y  K+ + D+                              + + W+  + 
Sbjct: 876  NILELKQFKAYATKLFMYDD---------------------------DGSDVIVWNKALS 908

Query: 319  GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI- 377
                 G   EA++ F +M         +TFV +L        V  G +  +  K  +GI 
Sbjct: 909  RFLQRGEAWEAVDCFVDMINSRVACDGLTFVVML-------TVVAGLNCLELGKQIHGIV 961

Query: 378  ----MPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                + ++   G C++++  +AG V +A      M    + + W T++  CT+ G
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQM-NEVDLISWNTMISGCTLSG 1015


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 351/576 (60%), Gaps = 11/576 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHV 103
           L+ VCA  +     K++H++ IR G+ L+   +G  L+  YA   L   +  A  +F  +
Sbjct: 268 LISVCAEIQFLSLGKELHSWVIRSGLVLDLC-VGCSLVDMYAKCGL---VQEARKVFDGM 323

Query: 104 QDPNIFTWNTMIRGYAESANPLL--AVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVR 160
           ++ N+ +W  ++ GY          A+ ++S M + G + P+  T+  +LKA + L D  
Sbjct: 324 REHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD 383

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            GEQ H   I+ G  ++  V N LV +YA  G ++ A K F+++ E++LV+   V +   
Sbjct: 384 FGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNV 443

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +   N    L RE+   G     +T  SL S  A +G +  G + H  V K+G   +++
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLS 503

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           VNNAL+  YSKCG   AA +VF +M   N ++W++++ G A +GF  +ALELF  M   G
Sbjct: 504 VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETG 563

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P +VT++ VL ACSH G++DE + +F  M+D +GI+P++EH+ CMVDLLGR+GL+ +A
Sbjct: 564 VKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEA 623

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            E+I +M    +A++WRT LG+C +H ++ + E A   +L+ EP     Y+LLSNLYA E
Sbjct: 624 IEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATE 683

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            RW +V  +R+ M ++++ K  G S +E+ N+V +F +GD  HP+ ++I+  L E+  K+
Sbjct: 684 GRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKI 743

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K  GYVP T+ V  D+E+E+KE  L  HSEK+A+AF L++T    P+RV KNLRVC DCH
Sbjct: 744 KNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCH 803

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            AIK IS V  REIVVRD +RFHH KDG CSC DYW
Sbjct: 804 TAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 182/326 (55%), Gaps = 23/326 (7%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL----SFPMSYAHNIFS 101
           LL+ C  +K  H  K +H     H +  +N  L   L+ ++++L    + P++ A +IF 
Sbjct: 58  LLKQCIRTKNTHLGKLLH-----HKLTTSNLPLDTLLLNSLITLYSKSNDPIT-AFSIFQ 111

Query: 102 HVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLAD 158
            +++   ++ +++++I  +A + N L AVE++ ++ +  G+ P+ + +  +++A  K   
Sbjct: 112 SMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGF 171

Query: 159 VRMGEQTHSVAIRNG-FESLVFVQNSLVHMY---AAFGHVKDACKVFELMSERDLVAWNS 214
            + G       ++ G F+S V V   L+ M+    +   ++ A KVF+ M E+++V W  
Sbjct: 172 FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTL 231

Query: 215 VINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           +I   A  G  +EA+ LF EM  S G  PD +T+  L S CAE+  L+LG+  H++V + 
Sbjct: 232 MITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRS 291

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG--KEALE 331
           GL  ++ V  +L+D Y+KCG++  A++VF  MR+ N +SW+ LV G    G G  +EA+ 
Sbjct: 292 GLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMR 351

Query: 332 LFKEMEI-GGFVPGEVTFVGVLYACS 356
           +F  M + GG  P   TF GVL AC+
Sbjct: 352 MFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 147/290 (50%), Gaps = 18/290 (6%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T   LLK   +  +  +G+  H     +       + NSL+ +Y+       A  +F+ M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 205 --SERDLVAWNSVINGFASNGKPNEALTLFRE-MASEGVEPDGYTMVSLFSACAELGALA 261
             S+RD+V+++S+I+ FA+N    +A+ +F + +  +GV P+ Y   ++  AC + G   
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 262 LGRRAHTYVWKVGLSDN-VNVNNALLDFYSK-CGI--IIAAQRVFREMRKRNAVSWSTLV 317
            G     +V K G  D+ V V   L+D + K C +  + +A++VF +MR++N V+W+ ++
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 318 VGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKD 373
             LA  G+  EA++LF EM +  G+VP   T  G++  C+    +  G    S+  R   
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIR--- 290

Query: 374 EYGIMPKIEHFGC-MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
             G++  +   GC +VD+  + GLV++A +    M    N + W  L+  
Sbjct: 291 -SGLVLDL-CVGCSLVDMYAKCGLVQEARKVFDGM-REHNVMSWTALVNG 337


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/524 (42%), Positives = 321/524 (61%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +  TW+TM+ G+  +  PL A+++Y +M   G+K D      +++A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   +VRMG   H   +R+G    V    SLV MYA  G +  AC+VF LM  R+ V+W
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+GFA NG+ +EAL LFR M + G++PD   +VS   AC+ +G L LGR  H ++ +
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                N  +  A +D YSKCG + +AQ +F  +  R+ + W+ ++     +G G++AL L
Sbjct: 339 R-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM   G  P   TF  +L A SH G+V+EG  +F RM + + I P  +H+ C+VDLL 
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A + + +M   P   IW  LL  C  +    + E     +L+L+P   G   L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  ++W  V++VR+ M     KK PG S +E+      F M D+SHPQ EEI + 
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSK 577

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           +A++  +++  GY+PRTE V+ D+EEE KE  LSYHSE++AIAF L+NT PGT + ++KN
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKN 637

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  REIVVRD  RFHHFKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++   +P  A+ ++  +  +  +PD+ T+   L A ++L D+R GE     A   G++  
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VFV +SL+H+YA +G + DA KVF  M  RD V W++++ GF S G+P +A+ ++R M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           +GV+ D   M+ +  AC     + +G   H ++ + G+  +V    +L+D Y+K G++  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A RVF  M  RN VSWS ++ G A NG   EAL LF+ M+  G  P     V  L ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-----VDLLGRAGLVKQAYEYIQNMLMPPN 412
            G +  G S        +G + +   F C+     +D+  + G +  A + + NM+   +
Sbjct: 323 IGFLKLGRSV-------HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRD 374

Query: 413 AVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            ++W  ++  C  H  G  A+          + P H+    LLS L
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/610 (39%), Positives = 339/610 (55%), Gaps = 70/610 (11%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           NP LG  L+ A  +   P   A N+F  + + N+  +N MIR Y  +     A+ ++  M
Sbjct: 66  NPSLGIKLMRAYAARGEP-GLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDM 124

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ------------- 181
              G  PD +TYP +LKA S   ++R+G Q H    + G +  +FV              
Sbjct: 125 VSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCL 184

Query: 182 ------------------NSLVHMYAA---FGHVKDACK--------------------- 199
                             NS+V  YA    F    D C+                     
Sbjct: 185 PEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAV 244

Query: 200 -------------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
                        +F  + ++ LV+WN +I+ +  N  P +++ L+ +M    VEPD  T
Sbjct: 245 TNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAIT 304

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+  AC +L AL LGRR H YV +  L  N+ + N+L+D Y++CG +  A+RVF  M+
Sbjct: 305 CASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMK 364

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            R+  SW++L+    + G G  A+ LF EM+  G  P  + FV +L ACSH G+++EG  
Sbjct: 365 FRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKF 424

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           YFK+M D+Y I P IEHF C+VDLLGR+G V +AY  I+ M M PN  +W  LL +C ++
Sbjct: 425 YFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVY 484

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
            +  I  +A   LLQL P+ SG YVLLSN+YA   RW  V  +R  M + R++K PG S 
Sbjct: 485 SNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISN 544

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           VEL N+V  F  GD  HPQ++EI+  L+ +  K+K  GYVP+T++   D+EEE+KE  L+
Sbjct: 545 VELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLA 604

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
            HSEK+AI F ++NT   +P+R+ KNLRVC DCH+A KLISK+  REIV+RD +RFHHFK
Sbjct: 605 VHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFK 663

Query: 607 DGHCSCRDYW 616
           DG CSC DYW
Sbjct: 664 DGICSCGDYW 673



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 111/210 (52%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            L K + +  D++  +  HS      F     +   L+  YAA G    A  VF+++ ER
Sbjct: 37  LLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPER 96

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           +++ +N +I  + +N   ++AL +FR+M S G  PD YT   +  AC+    L +G + H
Sbjct: 97  NVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLH 156

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             V+KVGL  N+ V N L+  Y KCG +  A+ V  EM+ ++ VSW+++V G A N    
Sbjct: 157 GAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFD 216

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +AL++ +EM+     P   T   +L A ++
Sbjct: 217 DALDICREMDGVRQKPDACTMASLLPAVTN 246


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/598 (41%), Positives = 359/598 (60%), Gaps = 43/598 (7%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYA-IVSLSFPMSYAHNIFSHVQDPN--IFTWNTMI 115
           L+Q+HA  +   +  +N  L   LI+  + + + P   A  +F H   P+  I  WN MI
Sbjct: 90  LQQIHAQVVTQALS-SNASLTASLIHCYLCAKNHP--NARILFDHYPSPSPPIKLWNVMI 146

Query: 116 RGYAESANPLLAVELYSKM-HVSG---IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           R Y++  N    + L+ +M  + G   + PD +T+ F++ + S    +  GE  H + ++
Sbjct: 147 RTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVK 206

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN----- 226
           +GFES ++V NS+++M + F  ++DA KVF  MSERD+ +W S++ G+A +G+ +     
Sbjct: 207 SGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACEL 266

Query: 227 --------------------------EALTLFREM-ASEGVEPDGYTMVSLFSACAELGA 259
                                     EALT F  M   + V P+   +V + SACA LGA
Sbjct: 267 FNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 326

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L  G   H Y+ K+G+  + N++ AL+D Y+KCG I  A RVF  + KR+ +S+++++ G
Sbjct: 327 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISG 386

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           L+ +G GK+AL +F +M     +P E+T +GVL  CSH G+V+EG S    M+  +GI P
Sbjct: 387 LSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAP 446

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           KIEH+GC +DLLGRAG +++A E ++ M M P+ VIWR LL A  IH +  + E   S +
Sbjct: 447 KIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHI 506

Query: 440 LQLEPK-HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
            QL+   H+G  VLLSNLYA   RW  V E+R+ MV  R + +PG S +E+   V EF +
Sbjct: 507 GQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRV 566

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
            D+ HPQ  EI   L EI K+L   GY   T  V  D+ EEEKE A+++HSEK+AIAF L
Sbjct: 567 ADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGL 626

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++T PGT +R+VKNLR C DCH A+K IS+VY REIVVRDRSRFH F +G CSC+D+W
Sbjct: 627 MSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 163/416 (39%), Gaps = 90/416 (21%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P+  T+  LL    KL+ +   +Q H+  +     S   +  SL+H Y    +  +A  +
Sbjct: 72  PNPQTFSLLLNQRPKLSPL---QQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARIL 128

Query: 201 FELMSERD--LVAWNSVINGFASNGKPNEALTLFREMAS-EG---VEPDGYTMVSLFSAC 254
           F+        +  WN +I  ++      E + LF  M + +G   V PD YT   + ++C
Sbjct: 129 FDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSC 188

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           +   +L  G   H  V K G   N+ V N++++  S    +  A++VF +M +R+  SW+
Sbjct: 189 SHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWT 248

Query: 315 TLVVGLAVNGFGKEALELFKEME----------IGGFV---------------------- 342
           +L+ G A +G    A ELF  M           I GF+                      
Sbjct: 249 SLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVN 308

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK---------------------- 380
           P E   V VL AC+H G +D+G ++     D+ GI                         
Sbjct: 309 PNEAVLVCVLSACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASR 367

Query: 381 ---------IEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHGH 428
                    +  F  M+  L   GL K A      ML   + PN +    +L  C+   H
Sbjct: 368 VFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCS---H 424

Query: 429 SAIAEIARSTLLQLE------PK--HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           S + E   S L  +E      PK  H G Y+ L     Y +R L   EV +TM  E
Sbjct: 425 SGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERAL---EVVKTMPME 477


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/564 (40%), Positives = 355/564 (62%), Gaps = 9/564 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L+QVHA  I      +   L K +  A  + +  ++Y H +F  V  P+ F +N++I+ 
Sbjct: 24  QLQQVHAHLIVTSYGRSRSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVIKS 81

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            ++   PL  V  Y +M  S + P  +T+  ++K+ + L+ +++G+  H  A+ +GF   
Sbjct: 82  TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLD 141

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            +VQ +LV  Y+  G ++ A +VF+ M E+ +VAWNS+++GF  NG   +A+ +F +M  
Sbjct: 142 TYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRE 201

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G EPD  T VSL SACA+ GA++LG   H Y+   GL  NV +  AL++ YS+CG +  
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGK 261

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACS 356
           A+ VF +M++ N  +W+ ++     +G+GK+A++LF +ME   G +P  VTFV VL AC+
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACA 321

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV-- 414
           H G+V++G S +KRM + Y ++P +EH  C+VD+LGRAG + +AY +IQ +    NA   
Sbjct: 322 HAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAP 381

Query: 415 -IWRTLLGACTIHGHSAIA-EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            +W  +LGAC +H +  +  EIA+  L+ LEP++ G +V+LSN+YA   +   V  +R  
Sbjct: 382 ALWTAMLGACKMHRNYDLGVEIAKR-LIALEPENPGHHVMLSNIYALSGKTDEVSHIRDR 440

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M++  ++K  G+S++E+ N+ + F MGD SH +T EI+  L  +  + K  GY P +E V
Sbjct: 441 MMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEV 500

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
              +EEEEKE AL YHSEK+A+AF L+ T   + + VVKNLR+C DCH A K IS V +R
Sbjct: 501 MHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISIVSNR 559

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           +I+VRD+ RFHHF++G CSC DYW
Sbjct: 560 QIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 353/628 (56%), Gaps = 70/628 (11%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           + LK++H   +       NP +G  L+    +   P   A +IF  + D N+  +N MIR
Sbjct: 35  NTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEP-GLARHIFDEITDKNVVFFNVMIR 93

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y  +     A+ +Y  M+  G  PD +TYP +LKA S+   + +G Q H   ++ G + 
Sbjct: 94  SYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDL 153

Query: 177 LVFVQN-------------------------------SLVHMYAAFGHVKDA---CK--- 199
            ++V N                               S+V +YA  G   DA   C+   
Sbjct: 154 NLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREME 213

Query: 200 -------------------------------VFELMSERDLVAWNSVINGFASNGKPNEA 228
                                          +F  ++++ +++WN +I  + +N  P EA
Sbjct: 214 ALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEA 273

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + L+ +M + GVEPD  ++VS+  A  +L AL+LGRR H +  +  L  N+ + NAL+D 
Sbjct: 274 VVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDM 333

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y+KCG +  A+ VF +M+ R+ VSW++++      G G++A+ +F EM   G  P  + F
Sbjct: 334 YAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAF 393

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           V VL ACSH G++D+G  YF  M  E GI PK+EHF C+VDLLGRAG + +AY +I+ M 
Sbjct: 394 VSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468
           + P+  +W  LL AC ++ +  I  +A   LL L P+HSG YVLLSN+YA   RW +V  
Sbjct: 453 LEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAA 512

Query: 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           +R  M ++ +KK PG S VEL + V  F  GD SHPQ+++I+  L  +  K+K  GY+P 
Sbjct: 513 IRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPE 572

Query: 529 TENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
           T++   D+EEE+KE  L+ HSEK+A+AF ++NT PGTP+RV KNLRVC DCH+A KLISK
Sbjct: 573 TDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISK 632

Query: 589 VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +  REI++RD  RFHHF++G CSC DYW
Sbjct: 633 IAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/611 (39%), Positives = 351/611 (57%), Gaps = 49/611 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS------YAHNI 99
           ++ LQ C +   +LKQ+HA  ++ G+ L +P       YA+              YAH++
Sbjct: 15  LSCLQKCPTEV-ELKQIHARMLKSGL-LQDP-------YAMTKFLSFCLSSSFSSYAHDV 65

Query: 100 FSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           F +  D P+ F WN MIRG + S  P  ++ LY +M       + +T+PFLLKA S L+ 
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
            +   Q H+   + G+   ++  NSL++ YA  G+ K A  +F+ + E D V+WNSVI G
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 219 FASNGKPNEALTLFR--------------------------------EMASEGVEPDGYT 246
           +   G+ + ALTLFR                                EM +  V PD  +
Sbjct: 186 YVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVS 245

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           + S  SAC++LGAL  G+  H+Y  K     +  +   L+D Y+KCG +  A  VF+ M+
Sbjct: 246 LASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMK 305

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            ++   W+ L+ G A +G G+EA+  F EM+  G  P  +TF  VL ACS+ G+V+EG S
Sbjct: 306 TKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKS 365

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            F  ++ +Y + P IEH+GCMVDLLGRAGL+ +A  +IQ M + PNAVIW +LL AC IH
Sbjct: 366 VFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIH 425

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
            +  + E     L++++  H G YV ++N++A  ++W    E RR M ++ V K PG S 
Sbjct: 426 KNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSA 485

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD-IEEEEKEDAL 545
           + L     EF  GDRSH + +EI      + +KL+  GYVP  E++  D +++EEKE  +
Sbjct: 486 ISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIV 545

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
             HSEK+AI + L+ T PGT +R++KNLRVC DCH  + LISK+Y R+IV+RDR+RFHHF
Sbjct: 546 HQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHF 605

Query: 606 KDGHCSCRDYW 616
           KDG CSC DYW
Sbjct: 606 KDGKCSCGDYW 616


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 351/559 (62%), Gaps = 3/559 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           LK++H +S++     N  +L      A  +    +SYA  +F  ++   + +WN +I G+
Sbjct: 414 LKELHCYSLKQEFVYN--ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A+S +P L+++ + +M +SG+ PD+ T   LL A SKL  +R+G++ H   IRN  E  +
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  S++ +Y   G +     +F+ M ++ LV+WN+VI G+  NG P+ AL +FR+M   
Sbjct: 532 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++  G +M+ +F AC+ L +L LGR AH Y  K  L D+  +  +L+D Y+K G I  +
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  +++++  SW+ +++G  ++G  KEA++LF+EM+  G  P ++TF+GVL AC+H 
Sbjct: 652 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 711

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI-QNMLMPPNAVIWR 417
           G++ EG  Y  +MK  +G+ P ++H+ C++D+LGRAG + +A   + + M    +  IW+
Sbjct: 712 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 771

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL +C IH +  + E   + L +LEP+   +YVLLSNLYA   +W +V++VR+ M +  
Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 831

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           ++K  G S +EL  +VF F +G+R     EEI ++ + +  K+   GY P T +V  D+ 
Sbjct: 832 LRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLS 891

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEK + L  HSEK+A+ + L+ T+ GT +RV KNLR+C DCH A KLISKV  REIVVR
Sbjct: 892 EEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVR 951

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHFK+G CSC DYW
Sbjct: 952 DNKRFHHFKNGVCSCGDYW 970



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 171/328 (52%), Gaps = 13/328 (3%)

Query: 41  VVRKCITLLQVCASSKHKL----KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           +VR+ + LL + AS K K     +++H   +     L N D+    I  + ++      +
Sbjct: 82  LVREALGLL-LQASGKRKDIEMGRKIHQL-VSGSTRLRNDDVLCTRIITMYAMCGSPDDS 139

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISK 155
             +F  ++  N+F WN +I  Y+ +      +E + +M   + + PD  TYP ++KA + 
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           ++DV +G   H + ++ G    VFV N+LV  Y   G V DA ++F++M ER+LV+WNS+
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259

Query: 216 INGFASNGKPNEALTLFREMASEGVE----PDGYTMVSLFSACAELGALALGRRAHTYVW 271
           I  F+ NG   E+  L  EM  E  +    PD  T+V++   CA    + LG+  H +  
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+ L   + +NNAL+D YSKCG I  AQ +F+    +N VSW+T+V G +  G      +
Sbjct: 320 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 379

Query: 332 LFKEMEIGG--FVPGEVTFVGVLYACSH 357
           + ++M  GG      EVT +  +  C H
Sbjct: 380 VLRQMLAGGEDVKADEVTILNAVPVCFH 407



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR----- 116
           VH   ++ G+ + +  +G  L+    +  F ++ A  +F  + + N+ +WN+MIR     
Sbjct: 209 VHGLVVKTGL-VEDVFVGNALVSFYGTHGF-VTDALQLFDIMPERNLVSWNSMIRVFSDN 266

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G++E +  LL  E+  +       PD  T   +L   ++  ++ +G+  H  A++   + 
Sbjct: 267 GFSEESFLLLG-EMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK 325

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM- 235
            + + N+L+ MY+  G + +A  +F++ + +++V+WN+++ GF++ G  +    + R+M 
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385

Query: 236 -ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
              E V+ D  T+++    C     L   +  H Y  K     N  V NA +  Y+KCG 
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 445

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  AQRVF  +R +   SW+ L+ G A +   + +L+   +M+I G +P   T   +L A
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 355 CS 356
           CS
Sbjct: 506 CS 507


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/558 (41%), Positives = 338/558 (60%), Gaps = 3/558 (0%)

Query: 59   LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
            + +VH  ++  G+ +++  +G   I+  +     +  A  +F  +   ++ TWN MI G 
Sbjct: 543  VNEVHKHAVETGL-ISDFRVGSAFIHMYIRCG-SIDDARLLFDKLSVRHVTTWNAMIGGA 600

Query: 119  AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            A+      A+ L+ +M   G  PD  T+  +L A      +   ++ HS A   G   L 
Sbjct: 601  AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDL- 659

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
             V N+LVH Y+  G+VK A +VF+ M ER++  W  +I G A +G  ++A + F +M  E
Sbjct: 660  RVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLRE 719

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            G+ PD  T VS+ SACA  GAL   +  H +    GL  ++ V NAL+  Y+KCG I  A
Sbjct: 720  GIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDA 779

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            + VF +M +R+  SW+ ++ GLA +G G EAL+ F +M+  GF P   ++V VL ACSH 
Sbjct: 780  RSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHA 839

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            G+VDEG   F  M  +YGI P +EH+ CMVDLLGRAGL+++A  +I NM + P+   W  
Sbjct: 840  GLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGA 899

Query: 419  LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
            LLGAC  +G+  +AE A    L+L+PK +  YVLLSN+YA   +W     VR  M ++ +
Sbjct: 900  LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGI 959

Query: 479  KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            +K PG S +E+ NR+  F +GD SHP+++EI+A L ++ ++LK +GYVP T  V  + ++
Sbjct: 960  RKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQ 1019

Query: 539  EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            E KE AL  HSEK+AI + L++T    P+RV KNLRVC+DCH A K ISK+  REIV RD
Sbjct: 1020 EHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARD 1079

Query: 599  RSRFHHFKDGHCSCRDYW 616
              RFHHFKDG CSC DYW
Sbjct: 1080 AKRFHHFKDGVCSCGDYW 1097



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 214/435 (49%), Gaps = 9/435 (2%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +LQ C   +  L  KQVH   I+ G+  N     K L   I      +  A  +F  +
Sbjct: 122 VNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYI--RCGRLQCARQVFDKL 179

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              NI+ W TMI GYAE  +   A+ +Y KM     +P+  TY  +LKA     +++ G+
Sbjct: 180 LKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGK 239

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H+  I++GF+S V V+ +LV+MY   G ++DA  +F+ M ER++++W  +I G A  G
Sbjct: 240 KIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG 299

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  EA  LF +M  EG  P+ YT VS+ +A A  GAL   +  H++    GL+ ++ V N
Sbjct: 300 RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y+K G I  A+ VF  M +R+  SW+ ++ GLA +G G+EA  LF +M+  G +P
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 344 GEVTFVGVLYACSHCGMVD-EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
              T++ +L A +       E      +  +E G +  +     ++ +  + G +  A  
Sbjct: 420 NLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARL 479

Query: 403 YIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
               M    + + W  ++G    +  GH A     +     L P  S  Y+ L N +   
Sbjct: 480 VFDGMC-DRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPD-STTYLSLLNTHGST 537

Query: 461 QRWLNVQEVRRTMVK 475
                V EV +  V+
Sbjct: 538 DALEWVNEVHKHAVE 552



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 192/374 (51%), Gaps = 13/374 (3%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +K+VH+ ++  G+ L+   +G  L++ + + S  +  A  +F  + + +IF+W  MI G 
Sbjct: 339 VKEVHSHAVNAGLALD-LRVGNALVH-MYAKSGSIDDARVVFDGMTERDIFSWTVMIGGL 396

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA--ISKLADVRMGEQTHSVAIRNGFES 176
           A+      A  L+ +M  +G  P+  TY  +L A  I+  + +   +  H  A   GF S
Sbjct: 397 AQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFIS 456

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + + N+L+HMYA  G + DA  VF+ M +RD+++WN+++ G A NG  +EA T+F +M 
Sbjct: 457 DLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQ 516

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG+ PD  T +SL +      AL      H +  + GL  +  V +A +  Y +CG I 
Sbjct: 517 QEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSID 576

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+ +F ++  R+  +W+ ++ G A    G+EAL LF +M+  GF+P   TF+ +L A  
Sbjct: 577 DARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA-- 634

Query: 357 HCGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
              + +E   + K +     + G++  +     +V    + G VK A +   +M+   N 
Sbjct: 635 --NVDEEALEWVKEVHSHATDAGLVD-LRVGNALVHTYSKCGNVKYAKQVFDDMV-ERNV 690

Query: 414 VIWRTLLGACTIHG 427
             W  ++G    HG
Sbjct: 691 TTWTMMIGGLAQHG 704



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 210/474 (44%), Gaps = 46/474 (9%)

Query: 112 NTMIRGYAESANPLL----AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           N  + G AE  + ++    AV +       GI  D+ +Y  +L+   K  D+ + +Q H 
Sbjct: 83  NASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHV 142

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             I++G E  ++V N L+ +Y   G ++ A +VF+ + ++++  W ++I G+A  G   +
Sbjct: 143 CIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAED 202

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ ++ +M  E  +P+  T +S+  AC     L  G++ H ++ + G   +V V  AL++
Sbjct: 203 AMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVN 262

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y KCG I  AQ +F +M +RN +SW+ ++ GLA  G G+EA  LF +M+  GF+P   T
Sbjct: 263 MYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYT 322

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           +V +L A +  G + E            G+   +     +V +  ++G +  A      M
Sbjct: 323 YVSILNANASAGAL-EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
               +   W  ++G    HG     + A S  LQ++         L NL  Y    LN  
Sbjct: 382 -TERDIFSWTVMIGGLAQHGR---GQEAFSLFLQMQRNGC-----LPNLTTY-LSILNAS 431

Query: 468 EVRRTMVKERVKKTPGH-------SLVELGNRVFEFF---------------MGDRSHPQ 505
            +  T   E VK    H       S + +GN +   +               M DR    
Sbjct: 432 AIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVIS 491

Query: 506 TEEIHAMLAE---------ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
              +   LA+         +  +++ EG VP +    + +      DAL + +E
Sbjct: 492 WNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNE 545


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 352/564 (62%), Gaps = 9/564 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L+QVHA  I  G   +   L K +  A  + +  ++Y H +F  V  P+ F +N++I+ 
Sbjct: 24  QLQQVHAHLIVTGYGRSRSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVIKS 81

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            ++   PL  V  Y +M  S + P  +T+  ++K+ + L+ +R+G+  H  A+ +GF   
Sbjct: 82  TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            +VQ +LV  Y+  G ++ A +VF+ M E+ +VAWNS+++GF  NG  +EA+ +F +M  
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G EPD  T VSL SACA+ GA++LG   H Y+   GL  NV +  AL++ YS+CG +  
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACS 356
           A+ VF +M++ N  +W+ ++     +G+G++A+ELF +ME   G +P  VTFV VL AC+
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 321

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV-- 414
           H G+V+EG S +KRM   Y ++P +EH  CMVD+LGRAG + +AY++I  +     A   
Sbjct: 322 HAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP 381

Query: 415 -IWRTLLGACTIHGHSAIA-EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            +W  +LGAC +H +  +  EIA+  L+ LEP + G +V+LSN+YA   +   V  +R  
Sbjct: 382 ALWTAMLGACKMHRNYDLGVEIAKR-LIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDG 440

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M++  ++K  G+S++E+ N+ + F MGD SH +T EI+  L  +  + K  GY P +E V
Sbjct: 441 MMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEV 500

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
              +EEEEKE AL YHSEK+A+AF L+ T     + +VKNLR+C DCH A K IS V +R
Sbjct: 501 MHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNR 559

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           +I VRD+ RFHHF++G CSC DYW
Sbjct: 560 QITVRDKLRFHHFQNGSCSCLDYW 583


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/524 (42%), Positives = 320/524 (61%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +  TW+TM+ G+  +  PL A+++Y +M   G+K D      +++A
Sbjct: 159 MGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   +VRMG   H   +R+G    V    SLV MYA  G +  AC+VF LM  R+ V+W
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+GFA NG+ +EAL LFR M + G++PD   +VS   AC+ +G L LGR  H ++ +
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                N  +  A +D YSKCG + +AQ +F  +  R+ + W+ ++     +G G++AL L
Sbjct: 339 R-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM   G  P   TF  +L A SH G+V+EG  +F  M + + I P  +H+ C+VDLL 
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLA 457

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A + + +M   P   IW  LL  C  +    + E     +L+L+P   G   L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  ++W  V++VR+ M     KK PG S +E+      F M D+SHPQ EEI + 
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSK 577

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           +A++  +++  GY+PRTE V+ D+EEE KE  LSYHSEK+AIAF L+NT PGT + ++KN
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKN 637

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  REIVVRD  RFHHFKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 178/346 (51%), Gaps = 16/346 (4%)

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++   +P  A+ ++  +  +  +PD+ T+   L A ++L D+R GE     A   G++  
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VFV +SL+H+YA +G + DA KVF+ M  RD V W++++ GF S G+P +A+ ++R M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           +GV+ D   M+ +  AC     + +G   H ++ + G+  +V    +L+D Y+K G++  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A RVF  M  RN VSWS ++ G A NG   EAL LF+ M+  G  P     V  L ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-----VDLLGRAGLVKQAYEYIQNMLMPPN 412
            G +  G S        +G + +   F C+     +D+  + G +  A + + NM+   +
Sbjct: 323 IGFLKLGRSV-------HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRD 374

Query: 413 AVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            ++W  ++  C  H  G  A+          + P H+    LLS L
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/555 (42%), Positives = 340/555 (61%), Gaps = 44/555 (7%)

Query: 102 HVQDPNI--FTWNTMIRGYAES--ANPLL--AVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           H+  PNI  F WN +IR    S   NP    A+ LY +M +  + PD HT+PFLL++I+ 
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY--------------------------- 188
                 G Q H+  +  G  +  FVQ SL++MY                           
Sbjct: 76  ---PHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAI 132

Query: 189 ----AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EG--VE 241
               A  G +  A K+F+ M E+++++W+ +I+G+ S G+   AL+LFR + + EG  + 
Sbjct: 133 IHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLR 192

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +TM S+ SACA LGAL  G+  H Y+ K G+  +V +  +L+D Y+KCG I  A+ +
Sbjct: 193 PNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCI 252

Query: 302 FREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           F  +  +++ ++WS ++   +++G  +E LELF  M   G  P  VTFV VL AC H G+
Sbjct: 253 FDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGL 312

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V EG  YFKRM +EYG+ P I+H+GCMVDL  RAG ++ A+  +++M M P+ +IW  LL
Sbjct: 313 VSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALL 372

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
               IHG     EIA + LL+L+P +S  YVLLSN+YA   RW  V+ +R  M    +KK
Sbjct: 373 NGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKK 432

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG SLVE+   + EFF GD SHP+   ++ ML EI K+L+  GY   T  V  D++EE 
Sbjct: 433 LPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEG 492

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE ALS HSEK+AIA+  + T+PGT +R+VKNLR+C+DCH+AIK+ISK ++REI+VRD +
Sbjct: 493 KEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCN 552

Query: 601 RFHHFKDGHCSCRDY 615
           RFHHFK+G CSC+DY
Sbjct: 553 RFHHFKNGLCSCKDY 567



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 14/239 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV---SGIKPDTHTYPFLLKA 152
           A  +F  + + N+ +W+ MI GY        A+ L+  +     S ++P+  T   +L A
Sbjct: 145 ARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSA 204

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERDLVA 211
            ++L  ++ G+  H+   + G +  V +  SL+ MYA  G ++ A  +F+ L  E+D++A
Sbjct: 205 CARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMA 264

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-----RRA 266
           W+++I  F+ +G   E L LF  M ++GV P+  T V++  AC   G ++ G     R  
Sbjct: 265 WSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMM 324

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           + Y    G+S  +     ++D YS+ G I  A  V + M  + + + W  L+ G  ++G
Sbjct: 325 NEY----GVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 358/593 (60%), Gaps = 22/593 (3%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFP 92
           E  I S+VR+C  LL         L+  HA   R  +P       L K L   + + +  
Sbjct: 67  EAHIVSLVRRCPGLLA--------LRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPA 118

Query: 93  MSYA------HNIFSHVQDPNIFTWNTMIRGY-AESANPLLAVELYSKMHVSGI-KPDTH 144
            + A       N+F  + DP  F +N++IR   A  + P LAV  Y +M  +G  +P++ 
Sbjct: 119 AAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSF 176

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T  F LKA + +     G Q H+ A+R G  +  +VQ  L+++YA    V  A  VF+ M
Sbjct: 177 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 236

Query: 205 S-ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           + +++LVAW+++++G++  G  NEAL LFREM + GVEPD  TMVS+ SACA+ GAL LG
Sbjct: 237 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG 296

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H Y+ + G++ ++ ++ AL+D Y+KCG+I  A+ VF  M +++  +WS ++VG A++
Sbjct: 297 KWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIH 356

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G  ++AL LF  M      P  VTF+GVL AC+H G+V++G  Y+  M++  GI P +E+
Sbjct: 357 GLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMEN 415

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GCMVDLL R+GL+  AY ++  M + PN+VIWRTLL AC       IAE A   LL+LE
Sbjct: 416 YGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELE 475

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P +  +YVLLSNLYA   +W  V  +RR M  + V    G S +E+   + EF + D SH
Sbjct: 476 PHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSH 535

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P+  EI  +L E+  +++  G+ P T  V  D+ EEEKE AL  HSE++AIA+ L+ T  
Sbjct: 536 PEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRA 595

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              +RVVKNLR C DCH   K+ISK Y+REIVVRDR RFH F  G CSC+D+W
Sbjct: 596 PHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/558 (40%), Positives = 343/558 (61%), Gaps = 2/558 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           LK++H +S++     +  +L      A  +    +SYA  +F  ++   + +WN +I GY
Sbjct: 398 LKELHCYSLKQEFVYD--ELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGY 455

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A+S++P L+++ + +M  SG+ PD  T   LL A SKL  +R+G++ H   IRN  E  +
Sbjct: 456 AQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 515

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  S++ +Y   G +     +F+ M +  LV+WN+VI G   NG P  AL LFR+M   
Sbjct: 516 FVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLY 575

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G++P G +M+++F AC+ L +L LGR AH Y  K  L DN  +  +++D Y+K G I  +
Sbjct: 576 GIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQS 635

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  +++++A SW+ +++G  ++G  KEA++LF+EM+  G  P ++TF+GVL AC+H 
Sbjct: 636 SKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHS 695

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G++ EG  Y  +MK  +G+ P ++H+ C++D+LGRAG +  A      M   P+  IW +
Sbjct: 696 GLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNS 755

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL  C IH +  + E   + L  LEP+   +YVLLSNLYA   +W +V++VR+ M +  +
Sbjct: 756 LLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSL 815

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K  G S +EL  +VF F +G+R     EEI ++ + +  K+   GY P T +V  D+ E
Sbjct: 816 RKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSE 875

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK + L  HSEK+AI + L+ T+ GT +RV KNLR+C DCH A KLISKV  REIVVRD
Sbjct: 876 EEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRD 935

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHF  G CSC DYW
Sbjct: 936 NKRFHHFNKGFCSCGDYW 953



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 15/263 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS 154
           + + F  ++  N+F WN +I  Y+ +      +E++ KM   + + PD  T+P ++KA +
Sbjct: 139 SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA 198

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            ++DV +G   H + ++ G    +FV N+LV  Y   G V DA K+F++M ER+LV+WNS
Sbjct: 199 GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNS 258

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I  F+ NG     +            PD  T+V++   CA    + +G+  H +  K+ 
Sbjct: 259 MIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIGVGKGVHGWAVKLS 306

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L   + VNNAL+D YSK G II +Q +F+    +N VSW+T+V G +  G      +L +
Sbjct: 307 LDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLR 366

Query: 335 EMEIGG--FVPGEVTFVGVLYAC 355
           +M  G       EVT +  +  C
Sbjct: 367 QMLAGSEDVKADEVTILNAVPVC 389



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 171/352 (48%), Gaps = 23/352 (6%)

Query: 7   HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFS 66
           +S+   Y E+ ++  ++ S  H  P +   P   V++ C  +  V          VH   
Sbjct: 161 YSRNELYHEVLEMFIKMISKTHLLPDNFTFP--CVIKACAGISDVGIG-----LAVHGLV 213

Query: 67  IRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL 126
           ++ G+ + +  +G  L+    +  F +S A  +F  + + N+ +WN+MIR ++++ +   
Sbjct: 214 VKTGL-VEDLFVGNALVSFYGTHGF-VSDALKLFDIMPERNLVSWNSMIRVFSDNGDD-- 269

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
                         PD  T   +L   ++  ++ +G+  H  A++   +  + V N+L+ 
Sbjct: 270 ----------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMD 319

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDG 244
           MY+ +G + D+  +F+L + +++V+WN+++ GF++ G  +    L R+M   SE V+ D 
Sbjct: 320 MYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADE 379

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T+++    C +   L   +  H Y  K     +  + NA +  Y+KCG +  AQRVF  
Sbjct: 380 VTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHG 439

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           +R +   SW+ L+ G A +   + +L+   +M+  G +P   T   +L ACS
Sbjct: 440 IRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACS 491



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 34/291 (11%)

Query: 148 FLLKAISKLADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
            LL+A  K  D+ MG + H  V+      S   +   ++ MYA  G   D+   F+ +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRS 148

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRR 265
           ++L  WN+VI+ ++ N   +E L +F +M S+  + PD +T   +  ACA +  + +G  
Sbjct: 149 KNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLA 208

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  V K GL +++ V NAL+ FY   G +  A ++F  M +RN VSW++++   + NG 
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG- 267

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---------FSYFKRMKDEYG 376
                      + G F+P   T V VL  C+    +  G          S  K +     
Sbjct: 268 -----------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNA 316

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +M     +GC++D            + I  +    N V W T++G  +  G
Sbjct: 317 LMDMYSKWGCIID-----------SQMIFKLNNNKNVVSWNTMVGGFSAEG 356


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/593 (39%), Positives = 354/593 (59%), Gaps = 14/593 (2%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           SQE   +S  ++   LL +C   +  L    A  +   +  N  D   +L   ++ +   
Sbjct: 70  SQE---SSPSQQTYELLILCCGHRSSLSD--ALRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 93  M---SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           +    YA  +F   +   I+ WN + R    + +    + LY KM+  G++ D  TY ++
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYV 184

Query: 150 LKAI----SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           LKA       +  +  G++ H+   R G+ S V++  +LV MYA FG V  A  VF  M 
Sbjct: 185 LKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMVSLFSACAELGALALG 263
            R++V+W+++I  +A NGK  EAL  FREM  E  +  P+  TMVS+  ACA L AL  G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H Y+ + GL   + V +AL+  Y +CG +   QRVF  M  R+ VSW++L+    V+
Sbjct: 305 KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G+GK+A+++F+EM   G  P  VTFV VL ACSH G+V+EG   F+ M  ++GI P+IEH
Sbjct: 365 GYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEH 424

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           + CMVDLLGRA  + +A + +Q+M   P   +W +LLG+C IHG+  +AE A   L  LE
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           PK++G+YVLL+++YA  Q W  V+ V++ +    ++K PG   +E+  +++ F   D  +
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFN 544

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P  E+IHA L ++ + +K +GY+P+T+ V  ++E EEKE  +  HSEK+A+AF L+NT+ 
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSK 604

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           G P+R+ KNLR+C DCHL  K ISK   +EI+VRD +RFH FK+G CSC DYW
Sbjct: 605 GEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 16/227 (7%)

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++ N +I      GK  +A+ +  + +S    P   T   L   C    +L+   R H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +   G   +  +   L+  YS  G +  A++VF + RKR    W+ L   L + G G+E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYAC-------SHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           L L+ +M   G      T+  VL AC       +H     E  ++  R     G    + 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR----GYSSHVY 218

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               +VD+  R G V  A  Y+   +   N V W  ++     +G +
Sbjct: 219 IMTTLVDMYARFGCVDYA-SYVFGGMPVRNVVSWSAMIACYAKNGKA 264


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/521 (42%), Positives = 324/521 (62%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F +++  ++ +W  MI GYAE+ N   A  L++ M   GI+PD  TY  ++ A + 
Sbjct: 313 ARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAI 372

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A++    + HS     GF + + V  +LVHMYA  G +KDA +VF+ M  RD+V+W+++
Sbjct: 373 SANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAM 432

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +  NG   EA   F  M    +EPDG T ++L +AC  LGAL +G   +T   K  L
Sbjct: 433 IGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADL 492

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V + NAL+   +K G +  A+ +F  M +R+ ++W+ ++ G +++G  +EAL LF  
Sbjct: 493 VSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDR 552

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M    F P  VTFVGVL ACS  G VDEG  +F  + +  GI+P ++ +GCMVDLLGRAG
Sbjct: 553 MLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAG 612

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A   I++M + P + IW +LL AC IHG+  +AE A    L ++P     YV LS+
Sbjct: 613 ELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSH 672

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W NV +VR+ M    ++K  G + +E+  +V  F + DRSHP   EI+A LA 
Sbjct: 673 MYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELAR 732

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +   +K EGY+P T+NV  D+ E++KE+A+SYHSEK+AIA+ +++   GTP+R+ KNLRV
Sbjct: 733 LMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRV 792

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C+DCH A K ISKV  REI+ RD SRFHHFKDG CSC DYW
Sbjct: 793 CSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 202/387 (52%), Gaps = 8/387 (2%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++L  C+S    +  K+VHA  +  G  +++  +G  L+   V     M  A  +F  +
Sbjct: 162 LSVLDACSSPAGLNWGKEVHAQVVTAGF-VSDFRIGTALVSMYVK-GGSMDDARQVFDGL 219

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ T+N M+ GYA+S +   A EL+ +M   G+KP+  ++  +L        +  G+
Sbjct: 220 HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGK 279

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H+  +  G    + V  SL+ MY   G ++ A +VF+ M  RD+V+W  +I G+A NG
Sbjct: 280 AVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENG 339

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              +A  LF  M  EG++PD  T + + +ACA    L   R  H+ V   G   ++ V+ 
Sbjct: 340 NIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVST 399

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y+KCG I  A++VF  M +R+ VSWS ++     NG+G EA E F  M+     P
Sbjct: 400 ALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEP 459

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             VT++ +L AC H G +D G   Y + +K +  ++  +     ++ +  + G V++A  
Sbjct: 460 DGVTYINLLNACGHLGALDVGMEIYTQAIKAD--LVSHVPLGNALIIMNAKHGSVERA-R 516

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHS 429
           YI + ++  + + W  ++G  ++HG++
Sbjct: 517 YIFDTMVRRDVITWNAMIGGYSLHGNA 543



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 193/393 (49%), Gaps = 8/393 (2%)

Query: 43  RKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           R  + L Q C   +     KQV    I+ G  LN  +L   +   + S+   ++ A  IF
Sbjct: 58  RTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLI--KLYSICGNVTEARQIF 115

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V++  + TWN +I GYA+  +   A  L+ +M   G++P   T+  +L A S  A + 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G++ H+  +  GF S   +  +LV MY   G + DA +VF+ +  RD+  +N ++ G+A
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +G   +A  LF  M   G++P+  + +S+   C    ALA G+  H      GL D++ 
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIR 295

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V  +L+  Y+ CG I  A+RVF  M+ R+ VSW+ ++ G A NG  ++A  LF  M+  G
Sbjct: 296 VATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG 355

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P  +T++ ++ AC+    ++       ++ D  G    +     +V +  + G +K A
Sbjct: 356 IQPDRITYMHIMNACAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDA 414

Query: 401 YEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIA 432
            +      MP   V+ W  ++GA   +G+   A
Sbjct: 415 RQVFD--AMPRRDVVSWSAMIGAYVENGYGTEA 445



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A ++  ++   G   D+ TY  L +  ++L D  +G+Q     I+ G +  ++  N+L+ 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           +Y+  G+V +A ++F+ +  + +V WN++I G+A  G   EA  LFR+M  EG+EP   T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            +S+  AC+    L  G+  H  V   G   +  +  AL+  Y K G +  A++VF  + 
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
            R+  +++ +V G A +G  ++A ELF  M+  G  P +++F+ +L  C
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 348/575 (60%), Gaps = 12/575 (2%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           T+L  C+S   +   +QVH F ++ G   N      Y+  A+V +      +  A N+  
Sbjct: 270 TILTACSSVLARCFGEQVHGFIVKSGFGSN-----VYVQSALVDMYAKCGDLKNAKNMLE 324

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            ++D ++ +WN+++ G+        A+ L+  MH   +K D +T+P +L     +     
Sbjct: 325 TMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSIN 382

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
            +  H + I+ GFE+   V N+LV MYA  G +  A  VFE M E+D+++W S++ G+A 
Sbjct: 383 PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQ 442

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N    E+L +F +M   GV PD + + S+ SACAEL  L  G++ H    K GL  + +V
Sbjct: 443 NNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSV 502

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            N+L+  Y+KCG +  A  +F  M+ ++ ++W+ ++VG A NG G+ +L+ +  M   G 
Sbjct: 503 YNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGT 562

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +TF+G+L+ACSH G+VDEG  YF++M   YGI P  EH+ CM+DL GR+G + +A 
Sbjct: 563 RPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAK 622

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           + +  M + P+A +W++LL AC +H +  +AE A + L +LEP ++  YV+LSN+Y+  +
Sbjct: 623 QLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASR 682

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           +W +V ++R+ M  + + K PG S +E+ +RV  F   DR HP+  EI+  + EI  ++K
Sbjct: 683 KWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIK 742

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GYVP       D+++E KE  L+YHSEK+A+AF L+   P  P+R+ KNLRVC DCH 
Sbjct: 743 EAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHS 802

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A+K IS+V++R I++RD + FHHF++G CSC DYW
Sbjct: 803 AMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 173/376 (46%), Gaps = 55/376 (14%)

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIR------------------------------ 116
           +S S  ++ A  +F  +   + ++WNTMI                               
Sbjct: 75  LSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSII 134

Query: 117 -GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GY +    + A +L+  M + G K    T   +L+  S L  ++ GE  H   ++NGFE
Sbjct: 135 SGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFE 194

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFR 233
             VFV   LV MYA    V +A  +F+ +    ++ V W +++ G+A NG   +A+  FR
Sbjct: 195 GNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFR 254

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M ++GVE + YT  ++ +AC+ + A   G + H ++ K G   NV V +AL+D Y+KCG
Sbjct: 255 YMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG 314

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A+ +   M   + VSW++L+VG   +G  +EAL LFK M        + TF  VL 
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 354 AC---------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            C          H  ++  GF  +K + +             +VD+  + G +  AY   
Sbjct: 375 CCVVGSINPKSVHGLIIKTGFENYKLVSNA------------LVDMYAKTGDMDCAYTVF 422

Query: 405 QNMLMPPNAVIWRTLL 420
           + ML   + + W +L+
Sbjct: 423 EKML-EKDVISWTSLV 437



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 45/288 (15%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV---------------------- 215
           ++  N L++  +  G V DA K+F+ M ++D  +WN++                      
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 216 ---------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
                    I+G+   G   EA  LFR M  EG +   +T+ S+   C+ LG +  G   
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWSTLVVGLAVNG 324
           H +V K G   NV V   L+D Y+KC  +  A+ +F+  E  ++N V W+ +V G A NG
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACS----HC-GMVDEGFSYFKRMKDEYGIMP 379
            G +A+E F+ M   G    + TF  +L ACS     C G    GF     +K  +G   
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFI----VKSGFGSNV 300

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            ++    +VD+  + G +K A   ++ M    + V W +L+     HG
Sbjct: 301 YVQ--SALVDMYAKCGDLKNAKNMLETM-EDDDVVSWNSLMVGFVRHG 345


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/524 (42%), Positives = 321/524 (61%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +  TW+TM+ G+  +  PL A+++Y +M   G+K D      +++A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   +VRMG   H   +R+G    V    SLV MYA  G +  AC+VF LM  R+ V+W
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+GFA NG+ +EAL LFR M + G++PD   +VS   AC+ +G L LGR  H ++ +
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                N  +  A +D YSKCG + +AQ +F  +  R+ + W+ ++     +G G++AL L
Sbjct: 339 R-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM   G  P   TF  +L A SH G+V+EG  +F RM + + I P  +H+ C+VDLL 
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A + + +M   P   IW  LL  C  +    + E     +L+L+P   G   L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  ++W  V++VR+ M     KK PG S +E+      F M D+SHPQ EEI + 
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSK 577

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           +A++  +++  GY+PRTE V+ D+EEE KE  LSYHSE++AIAF L+NT PGT + ++KN
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKN 637

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  REIVVRD  RFHHFKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 179/350 (51%), Gaps = 24/350 (6%)

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++   +P  A+ ++  +  +  +PD+ T+   L A ++L D+R GE     A   G++  
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VFV +SL+H+YA +G + DA KVF  M  RD V W++++ GF S G+P +A+ ++R M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           +GV+ D   M+ +  AC     + +G   H ++ + G+  +V    +L+D Y+K G++  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A RVF  M  RN VSWS ++ G A NG   EAL LF+ M+  G  P     V  L ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-----VDLLGRAGLVKQAYEYIQNMLMPPN 412
            G +  G S        +G + +   F C+     +D+  + G +  A + + NM+   +
Sbjct: 323 IGFLKLGRSV-------HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRD 374

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQ------LEPKHSGDYVLLSNL 456
            ++W  ++  C  HG    A     TL Q      + P H+    LLS L
Sbjct: 375 LILWNAMIACCGAHGRGQDA----LTLFQEMNETGMRPDHATFASLLSAL 420


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/604 (39%), Positives = 353/604 (58%), Gaps = 21/604 (3%)

Query: 22  RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           R  SLY   P     P    ++ C +L  +  S K   +Q   F  +  + +++      
Sbjct: 68  RKLSLY---PTRSSFPCA--IKACSSLFDI-FSGKQTHQQAFVFGYQSDIFVSSA----- 116

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
            +  + S    +  A  +F  +   +I +W +MIRGY  + N L AV L+  + V     
Sbjct: 117 -LIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDD 175

Query: 142 DTHTY------PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH-- 193
           D   +        ++ A S++    + E  HS  I+ GF+  V V N+L+  YA  G   
Sbjct: 176 DDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGG 235

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP-DGYTMVSLFS 252
           V  A K+F+ + ++D V++NS+++ +A +G  NEA  +FR +    V   +  T+ ++  
Sbjct: 236 VAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLL 295

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           A +  GAL +G+  H  V ++GL D+V V  +++D Y KCG +  A++ F  M+ +N  S
Sbjct: 296 AVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRS 355

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ ++ G  ++G   +ALELF  M   G  P  +TFV VL ACSH G+  EG+ +F  MK
Sbjct: 356 WTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMK 415

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             +G+ P +EH+GCMVDLLGRAG +++AY+ IQ M M P+++IW +LL AC IH +  +A
Sbjct: 416 GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           EI+ + L +L+  + G Y+LLS++YA   RW +V+ VR  M    + K PG SL+EL   
Sbjct: 476 EISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGE 535

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
           V  F +GD  HPQ E+I+  LAE+ +KL   GYV  T +V  D++EEEKE  L  HSEK+
Sbjct: 536 VHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL 595

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AIAF ++NT PG+ V VVKNLRVC+DCH  IKLISK+  RE VVRD  RFHHFKDG CSC
Sbjct: 596 AIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSC 655

Query: 613 RDYW 616
            DYW
Sbjct: 656 GDYW 659



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 182/345 (52%), Gaps = 21/345 (6%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           +V   ++F+WN++I   A S +   A+  +S M    + P   ++P  +KA S L D+  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+QTH  A   G++S +FV ++L+ MY+  G ++DA KVF+ + +RD+V+W S+I G+  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDL 154

Query: 222 NGKPNEALTLFREM------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           NG   +A++LF+++        + +  D   +VS+ SAC+ + A  L    H++V K G 
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF 214

Query: 276 SDNVNVNNALLDFYSKCGI--IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
              V+V N LLD Y+K G   +  A+++F ++  ++ VS+++++   A +G   EA E+F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVF 274

Query: 334 KEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKR-----MKDEYGIMPKIEHFGCM 387
           + +     V    +T   VL A SH G +  G     +     ++D+  +   I    C 
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
               GR    ++A++ ++N     N   W  ++    +HGH+A A
Sbjct: 335 C---GRVETARKAFDRMKN----KNVRSWTAMIAGYGMHGHAAKA 372


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 358/593 (60%), Gaps = 22/593 (3%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFP 92
           E  I S+VR+C  LL         L+  HA   R  +P       L K L   + + +  
Sbjct: 18  EAHIVSLVRRCPGLLA--------LRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPA 69

Query: 93  MSYA------HNIFSHVQDPNIFTWNTMIRGY-AESANPLLAVELYSKMHVSGI-KPDTH 144
            + A       N+F  + DP  F +N++IR   A  + P LAV  Y +M  +G  +P++ 
Sbjct: 70  AAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSAPALAV--YRRMLRAGSPRPNSF 127

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T  F LKA + +     G Q H+ A+R G  +  +VQ  L+++YA    V  A  VF+ M
Sbjct: 128 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 187

Query: 205 S-ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           + +++LVAW+++++G++  G  NEAL LFREM + GVEPD  TMVS+ SACA+ GAL LG
Sbjct: 188 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG 247

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H Y+ + G++ ++ ++ AL+D Y+KCG+I  A+ VF  M +++  +WS ++VG A++
Sbjct: 248 KWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIH 307

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G  ++AL LF  M      P  VTF+GVL AC+H G+V++G  Y+  M++  GI P +E+
Sbjct: 308 GLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMEN 366

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +GCMVDLL R+GL+  AY ++  M + PN+VIWRTLL AC       IAE A   LL+LE
Sbjct: 367 YGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELE 426

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P +  +YVLLSNLYA   +W  V  +RR M  + V    G S +E+   + EF + D SH
Sbjct: 427 PHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSH 486

Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
           P+  EI  +L E+  +++  G+ P T  V  D+ EEEKE AL  HSE++AIA+ L+ T  
Sbjct: 487 PEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRA 546

Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              +RVVKNLR C DCH   K+ISK Y+REIVVRDR RFH F  G CSC+D+W
Sbjct: 547 PHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/515 (43%), Positives = 332/515 (64%), Gaps = 15/515 (2%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+ F++NT+I+      +P  A+ L+S MH + +  D  T+P +LK              
Sbjct: 51  PDPFSYNTIIK----HVSPTGAISLFSHMHRNSVPFDHFTFPLILKHHHH-------HLL 99

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           HS+  + GF++ +FVQN+L++ Y + G +  A K+F+ M  RD+V+W+++I+    N  P
Sbjct: 100 HSLIFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLP 159

Query: 226 NEALTLFREMASEGVEP----DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
            EAL++F++M     +     D   M+S+ SA + LG + LG   H+++ ++G+   V +
Sbjct: 160 AEALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPL 219

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             AL++ YS+CG+I  + +VF EM +RN V+W+ L+ GLAV+G  +EAL++F EM+  G 
Sbjct: 220 GTALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGL 279

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P    F+GVL ACSH G+V++G+  F+ M+DE+GI P +EH+GCMVDLLGRAGL+ +A+
Sbjct: 280 KPDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAF 339

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           ++++ M + PN+VIWRTLLGAC  H H  +AE AR  +++L+P H GDYVLLSN Y    
Sbjct: 340 DFVEEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVG 399

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W     +R +M + R+ K PG S V +   V EF  GD  HPQ EEI   LA I   +K
Sbjct: 400 NWGGKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVK 459

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
           L GY P T +V  DI++EEKE  L YHSEK+A+AF+L+       +RV+KNLR+C DCH 
Sbjct: 460 LGGYTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHD 519

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +K  S ++ R+I++RDR+RFHHF  G CSC+D+W
Sbjct: 520 FMKHASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 342/557 (61%), Gaps = 33/557 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A+ +FS + + +I +WN+MI G+ +  +P  A++L+ +M +   +P+  T   +L A
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +K  D+  G        RNG +  + + N+++ MY   G ++DA ++F+ M E+D+V+W
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301

Query: 213 NSVINGFA-------------------------------SNGKPNEALTLFREMA-SEGV 240
            ++I+G+A                                NGKP EAL +FRE+  ++  
Sbjct: 302 TTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P+  T+ S  +ACA+LGA+ LG   H Y+ K G+  N ++  +L+D YSKCG +  A  
Sbjct: 362 KPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALE 421

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + +R+   WS ++ GLA++G G+ A++LF +M+     P  VTF  +L ACSH G+
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGL 481

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEG  +F +M+  YG++P  +H+ CMVD+LGRAG +++A E I+ M + P+A +W  LL
Sbjct: 482 VDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALL 541

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC I+G+  +AE+A S LL+ +  + G YVLLSN+YA   +W  V  +R+ M    ++K
Sbjct: 542 GACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEK 601

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE- 539
            PG S +E+   + EF +GD SHP + EI++ L EI  ++K  GYV    ++   +EEE 
Sbjct: 602 EPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEY 661

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
            KE AL+ HSEK+AIA+ L+   P  P+R+VKNLRVC DCH   KLISK+Y+R+I++RDR
Sbjct: 662 MKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDR 721

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHF  G+CSC DYW
Sbjct: 722 YRFHHFSGGNCSCMDYW 738



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 228/432 (52%), Gaps = 41/432 (9%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
           + NP T  +     L+  CA+ KH LKQ+HA  +R G+  + P   K      +S    +
Sbjct: 27  KSNPSTVPI-----LIDKCANKKH-LKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSL 80

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKA 152
            YA  +F  +  PN++TWNT+IR +A S  P+  + ++ +M H S   P+++T+PF++KA
Sbjct: 81  DYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKA 140

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++++ +  G+  H + ++  F S +F+ NSL+H Y++ G +  A  VF  + E+D+V+W
Sbjct: 141 ATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSW 200

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I+GF   G P EAL LF+ M  E   P+  TMV + SACA+   L  GR A  Y+ +
Sbjct: 201 NSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIER 260

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA----------- 321
            G+  N+ ++NA+LD Y KCG +  A+R+F +M +++ VSW+T++ G A           
Sbjct: 261 NGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRV 320

Query: 322 --------------------VNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGM 360
                                NG  KEAL +F+E+++     P EVT    L AC+  G 
Sbjct: 321 FDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGA 380

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +D G      +K + GI         ++D+  + G +++A E   + +   +  +W  ++
Sbjct: 381 MDLGGWIHVYIKKQ-GIKLNFHITTSLIDMYSKCGHLEKALEVFYS-VERRDVFVWSAMI 438

Query: 421 GACTIHGHSAIA 432
               +HGH   A
Sbjct: 439 AGLAMHGHGRAA 450



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 152/313 (48%), Gaps = 20/313 (6%)

Query: 119 AESANPLLAVELYSKMHV----SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           A   NPL +V + S   +    +  K +  T P L   I K A+ +  +Q H+  +R G 
Sbjct: 2   ATLGNPLASVPISSNPTILTANNEQKSNPSTVPIL---IDKCANKKHLKQLHAHMLRTG- 57

Query: 175 ESLVFVQNSLVHMYAAFG-----HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
             L F   S   ++ A        +  ACKVF+ +   +L  WN++I  FAS+ KP + L
Sbjct: 58  --LFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGL 115

Query: 230 TLFREMASEGVE-PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
            +F +M  E    P+ YT   +  A  E+ +L  G+  H  V K     ++ ++N+L+ F
Sbjct: 116 LVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHF 175

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           YS  G + +A  VF ++ +++ VSW++++ G    G  +EAL+LFK M++    P  VT 
Sbjct: 176 YSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTM 235

Query: 349 VGVLYACSHCGMVDEGFSYFK-RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           VGVL AC+    +D  F  +     +  GI   +     M+D+  + G ++ A      M
Sbjct: 236 VGVLSACAK--RIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKM 293

Query: 408 LMPPNAVIWRTLL 420
               + V W T++
Sbjct: 294 -EEKDIVSWTTMI 305


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 334/558 (59%), Gaps = 5/558 (0%)

Query: 60  KQVHAFSIRHGV-PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           K++H +++R G   L N       +YA       +  A  +F  + + N+ +WN+MI  Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCG---SLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++ NP  A+ ++ KM   G+KP   +    L A + L D+  G   H +++  G +  V
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V NSL+ MY     V  A  +F  +  R LV+WN++I GFA NG+P +AL  F +M S 
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            V+PD +T VS+ +A AEL      +  H  V +  L  NV V  AL+D Y+KCG I+ A
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + +F  M +R+  +W+ ++ G   +GFGK ALELF+EM+ G   P  VTF+ V+ ACSH 
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V+ G   F  MK+ Y I   ++H+G MVDLLGRAG + +A+++I  M + P   ++  
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           +LGAC IH +   AE A   L +L P   G +VLL+N+Y     W  V +VR +M+++ +
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +KTPG S+VE+ N V  FF G  +HP +++I+A L ++   +K  GYVP T N+   +E 
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLVLGVEN 731

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           + KE  LS HSEK+AI+F L+NT  GT + V KNLRVCADCH A K IS V  REIVVRD
Sbjct: 732 DVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRD 791

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHFK+G CSC DYW
Sbjct: 792 MQRFHHFKNGACSCGDYW 809



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 232/489 (47%), Gaps = 66/489 (13%)

Query: 5   LMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKL--KQV 62
           L H+    + ++SDL    K+L        ++ +  VV     LL+VC         K++
Sbjct: 102 LYHTMLKGFAKVSDLD---KALQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEI 157

Query: 63  HAFSIRHGVPLNNPDLGKYLIYAIVSLS------FPMSYAHNIFSHVQDPNIFTWNTMIR 116
           H   ++ G  L+        ++A+  L         ++ A  +F  + + ++ +WNT++ 
Sbjct: 158 HGLLVKSGFSLD--------LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVA 209

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY+++    +A+E+   M    +KP   T   +L A+S L  + +G++ H  A+R+GF+S
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           LV +  +LV MYA  G ++ A ++F+ M ER++V+WNS+I+ +  N  P EA+ +F++M 
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EGV+P   +++    ACA+LG L  GR  H    ++GL  NV+V N+L+  Y KC  + 
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +F +++ R  VSW+ +++G A NG   +AL  F +M      P   T+V V+ A +
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449

Query: 357 H-----------------------------------CGMVDEGFSYFKRMKDEYGIMPKI 381
                                               CG +      F  M + +     +
Sbjct: 450 ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----V 504

Query: 382 EHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
             +  M+D  G  G  K A   +E +Q   + PN V + +++ AC+   HS + E     
Sbjct: 505 TTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS---HSGLVEAGLKC 561

Query: 439 LLQLEPKHS 447
              ++  +S
Sbjct: 562 FYMMKENYS 570



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 186/330 (56%), Gaps = 4/330 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LL+ C+S K +L+Q+     ++G  L      +  + ++      +  A  +F  +    
Sbjct: 43  LLERCSSLK-ELRQILPLVFKNG--LYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              ++TM++G+A+ ++   A++ + +M    ++P  + + +LLK     A++R+G++ H 
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           + +++GF   +F    L +MYA    V +A KVF+ M ERDLV+WN+++ G++ NG    
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL + + M  E ++P   T+VS+  A + L  +++G+  H Y  + G    VN++ AL+D
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG +  A+++F  M +RN VSW++++     N   KEA+ +F++M   G  P +V+
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            +G L+AC+  G ++ G  +  ++  E G+
Sbjct: 340 VMGALHACADLGDLERG-RFIHKLSVELGL 368


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/535 (42%), Positives = 341/535 (63%), Gaps = 7/535 (1%)

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIK 140
           LI   VS  +  S A  +F  +   ++ +WN MI GY E+ N   A+EL+ +M + + ++
Sbjct: 161 LIAGYVSRGYIES-AQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVR 219

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD  T   ++ A ++   + +G   HS    +GF S + + N+L+ +Y+ FG V+ AC++
Sbjct: 220 PDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACEL 279

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ +  +D+++WN++I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 261 ALGRRAHTYVWKV--GLSDNVN-VNNALLDFYSKCGIIIAAQRVF-REMRKRNAVSWSTL 316
            +GR  H Y+ K   G+  NV+ +  +L+D Y+KCG I AAQ+VF   M  R+  +W+ +
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAM 399

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + G A++G    A ++F  M + G  P ++TFVG+L ACSH GM+D G + F+ M   Y 
Sbjct: 400 ISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYE 459

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           I PK+EH+GCM+DLLG +GL K+A E I  M M P+ VIW +LL AC IHG+  + E   
Sbjct: 460 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFA 519

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV-KKTPGHSLVELGNRVFE 495
             L+++EP +SG YVLLSN+YA   RW  V ++R  +  + + KK PG S +E+ + V E
Sbjct: 520 KKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHE 579

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIA 555
           F +GD+ HPQ  EI+ ML E+   L+  G+VP T  V  ++EEE +E AL +HSEK+AIA
Sbjct: 580 FIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIA 639

Query: 556 FMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           F L++T PGT + ++KNLRVC +CH A KLISK+Y REI+ RDR+RF HF+DG C
Sbjct: 640 FGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 226/423 (53%), Gaps = 37/423 (8%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRG 117
           ++ +HA  I+ G+   N  L K L + +VS  F    YA ++F  +Q+PN+  WNTM RG
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           +A S++P+ A++LY  M   G+ PD++T+PFLLK+ +K    + G+Q H   ++ GF+  
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSER------------------------------ 207
           ++V  SL+ MYA  G ++DA KVF++ S R                              
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 208 -DLVAWNSVINGFASNGKPNEALTLFRE-MASEGVEPDGYTMVSLFSACAELGALALGRR 265
            D+V+WN++I+G+   G   EAL LF+E M    V PD  TMV++ SACA+  ++ LGR 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H+++   G + N+ + NAL+D YSK G +  A  +F  +  ++ +SW+TL+ G      
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-FSYFKRMKDEYGIMPKIEHF 384
            KEAL LF+EM   G  P +VT + +L AC+H G +D G + +    K   G++  +   
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 385 -GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQ 441
              ++D+  + G +  A +   + +   +   W  ++    +HG  ++A    +R  +  
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 442 LEP 444
           +EP
Sbjct: 424 IEP 426


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/535 (42%), Positives = 339/535 (63%), Gaps = 12/535 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS---------GIKPDT 143
           +S A  +F  +   NI TW ++I GY ++ +   A+ ++ +             G   D+
Sbjct: 133 LSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDS 192

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
                +L A S++++  + E  H VAI+ G + ++ V+N+L+  YA  G V  + KVF+ 
Sbjct: 193 VAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDD 252

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALAL 262
           M+E+D+V+WNS+I  +A NG   +A  +F  M  + G + +  T+ +L  ACA  GAL +
Sbjct: 253 MAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G   H  V K+G  +NV +  +++D Y KCG    A+  F  M+++N  SW+ ++ G  +
Sbjct: 313 GMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGM 372

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +GF +EAL++F +M   G  P  +TF+ VL ACSH G ++EG+ +F  M  EY + P +E
Sbjct: 373 HGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+GCMVDLLGRAG +K+AY  I++M +  + V+W +LL AC IH    +AEI+   L +L
Sbjct: 433 HYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKL 492

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDR 501
           +P + G YVLL+N+YA   RW +V+ +R  +VK+R + K PG+SLVEL  RV  F +GD+
Sbjct: 493 DPSNCGYYVLLANIYADAGRWKDVERMR-ILVKDRGLVKPPGYSLVELKGRVHVFLVGDK 551

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
            HPQ E+I+  L E++ KL+  GYVP   +V  D++EEEKE  +  HSEK+A+AF ++N+
Sbjct: 552 EHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNS 611

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            PG+ + V+KNLRVC DCH  IKLISK+ SREI+VRD  RFHHFKDG CSC DYW
Sbjct: 612 IPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 171/331 (51%), Gaps = 12/331 (3%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++++WN++I   A   +   ++  +S M    IKP+  T+P  +K+ S L D+  G+Q H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
             A+  GFES +FV ++L+ MY+  G + +A  +F+ +  R++V W S+I G+  N   +
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165

Query: 227 EALTLFREMASE---------GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           EAL +F+E   E         G   D   M+S+ SAC+ +   A+    H    KVGL  
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK 225

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM- 336
            + V N LLD Y+KCG +  +++VF +M +++ VSW++++   A NG   +A E+F  M 
Sbjct: 226 VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGML 285

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           + GG    EVT   +L AC+H G +  G     ++  + G +  +     ++D+  + G 
Sbjct: 286 KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVI-KMGYVNNVIMATSIIDMYCKCGQ 344

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            + A      M    N   W  ++    +HG
Sbjct: 345 AEMARNAFDGM-KEKNVRSWTAMIAGYGMHG 374


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/641 (37%), Positives = 372/641 (58%), Gaps = 67/641 (10%)

Query: 5   LMHSKQPSYEEISDLPCRVKSLYHS-------TPASQENPITSVVRKCITLLQVCASSKH 57
           +M S +P     S LP  ++ L H         P   + P TS  +  ++ L+       
Sbjct: 41  MMVSTKPQLTP-SLLPLTIQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLE------- 92

Query: 58  KLKQVHAFSIR----HG--VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW 111
           + KQ+HA  I+    H   +PLN+               FP   + +            W
Sbjct: 93  QTKQIHAHIIKTHFHHALQIPLND---------------FPSGLSPSA----------QW 127

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I  Y +   P  A+ +Y+++     + D    P +LKA  +++  ++G++ H   ++
Sbjct: 128 NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 187

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW----NSVINGFASNGKPNE 227
            G +  VFV N+L+ MY     V+ A  VF+ M ERD+V+W     ++++ +A  G    
Sbjct: 188 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGL 247

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-------------TYVWKVG 274
           A  LF  +  + V     +  ++ + C     L  G +               T + K  
Sbjct: 248 ARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKER 303

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  +  +N AL+D Y+KCG I AA R+F E   R+   W+ ++ G A++G+G+EAL++F 
Sbjct: 304 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 363

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EME  G  P ++TF+G+L+ACSH G+V EG   F++M   +G++P+IEH+GCMVDLLGRA
Sbjct: 364 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 423

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           GL+ +A+E I++M + PN ++W  L+ AC +H +  + E+A + LL++EP++ G  VL+S
Sbjct: 424 GLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMS 483

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   RW +   VR+TM    +KK PGHS++E+   V EF MGD+SHPQ   I+ MLA
Sbjct: 484 NIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 543

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+ +KL   GYVP T  V  +I+EEEKE AL+YHSEK+A+AF L++TAP TP+R+VKNLR
Sbjct: 544 EMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLR 603

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           VC DCH A KL+SK+Y R I+VRDR+RFHHF++G+CSC DY
Sbjct: 604 VCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/563 (41%), Positives = 351/563 (62%), Gaps = 9/563 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L+Q HA  +  G   +   L K L  +  + S  ++Y   +F  V DP+ F +N++I+ 
Sbjct: 25  RLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGS--IAYTRRLFRSVSDPDSFLFNSLIKA 82

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +     L AV  Y +M  S I P T+T+  ++KA + L+ +R+G   HS    +G+ S 
Sbjct: 83  SSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASN 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            FVQ +LV  YA     + A KVF+ M +R ++AWNS+I+G+  NG  +EA+ +F +M  
Sbjct: 143 SFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRE 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G EPD  T VS+ SAC++LG+L LG   H  +   G+  NV +  +L++ +S+CG +  
Sbjct: 203 SGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGR 262

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF  M + N VSW+ ++ G  ++G+G EA+E+F  M+  G VP  VT+V VL AC+H
Sbjct: 263 ARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAH 322

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNA 413
            G+++EG   F  MK EYG++P +EH  CMVD+ GR GL+ +AY++++ +    L+P   
Sbjct: 323 AGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPA-- 380

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            +W  +LGAC +H +  +       L+  EP++ G YVLLSN+YA   R   V+ VR  M
Sbjct: 381 -VWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
           ++  +KK  G+S +++ NR + F MGD+SHP+T EI+  L E+  + K  GY P  E+  
Sbjct: 440 IQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAM 499

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            ++EEEE+E AL YHSEK+A+AF L+ T  G  +R+VKNLR+C DCH AIK IS V +RE
Sbjct: 500 HELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNRE 559

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRD+ RFHHF++G CSC DYW
Sbjct: 560 IIVRDKLRFHHFREGSCSCSDYW 582


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/567 (40%), Positives = 331/567 (58%), Gaps = 14/567 (2%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-----PNIFTWN 112
           +  Q+HA  +R G+ + +P        ++ ++S P   A  +  H        P+ F  N
Sbjct: 51  RFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCN 110

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           +++R  ++ ++   A+    ++   G + +  T   LLK    LA  R   Q H+  +  
Sbjct: 111 SILRALSDPSD---ALRFLCRVRALGRRGNAFTLAILLKPRCSLAHAR---QLHANVVAE 164

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G      +  SL+  YA  G    A K+F+ M  RD VAWN +I  +A N +  +AL LF
Sbjct: 165 GHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLF 224

Query: 233 REMASEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
            EM  +  E  PD  T + L  AC+ LGAL  G +   Y  + G    + V N+L+  Y 
Sbjct: 225 EEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYL 284

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  A RVF    +++ V+W+ ++ GLA NGFG +A+ +F+EM      P E TF G
Sbjct: 285 RCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTG 344

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN-MLM 409
           VL ACSH G+VDEGF +F  M+ EYG+ P + H+GC+VDL+GRAGL+ +AYE++ N M +
Sbjct: 345 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKV 404

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+A IWRTLLGAC IHGH  + E     L++L+ + +GDYVLL N YA    W  V E+
Sbjct: 405 APDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEI 464

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R+ M +E ++ TPG + VE    V EF   D +HP+  EI+  L+EI K+L++ GYVP  
Sbjct: 465 RKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNV 524

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
            +   D++ E KE AL+YHSEK+AIAF L+ T    P+R+ KNLRVC DCH   K+ S +
Sbjct: 525 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAI 584

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           Y R ++VRDR+RFHHF+ G CSC DYW
Sbjct: 585 YRRIVIVRDRTRFHHFQGGKCSCNDYW 611


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/596 (40%), Positives = 348/596 (58%), Gaps = 34/596 (5%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
            SS   ++ VHA  ++ G+   N  +   L+    +     + A  + S  +      WN
Sbjct: 56  GSSAAPVRAVHAHVVKFGMG-RNAHVATSLV-TAYAAGGDGAAARALLSERERDTPVVWN 113

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSVAIR 171
            +I G+        A   +  M  +G  P   TY  +L A  K   DV +G Q H   + 
Sbjct: 114 ALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVG 173

Query: 172 NGFESLVFVQNSLVHMYAA-------------------------------FGHVKDACKV 200
           +G    + V+N+LV MYA                                 G V +A  +
Sbjct: 174 SGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDL 233

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F  M ERD V+W ++I+G+    +  EAL +FREM    V  D +TMVS+ +ACA+LGAL
Sbjct: 234 FGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGAL 293

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            +G     Y+ + G+  +  V NAL+D YSKCG I  A  VF++M  R+  +W+ +++GL
Sbjct: 294 EMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGL 353

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           AVNG+G+EA+E+F  M      P EVTF+GVL AC+H G+VD+G  +F  M++ Y I P 
Sbjct: 354 AVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPN 413

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           + H+GC++DL GRAG + +A + I  M M PN+ IW TLL AC +HG+S I E+    LL
Sbjct: 414 VVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLL 473

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           Q++P++S  Y LLSN+YA   RW +V+ +R T++++ +KK PG SL+E+   + EF  GD
Sbjct: 474 QMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGD 533

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
           +SHP ++EI+  L  I   L   GY P    VF ++ EEEK+  L +HSEK+AIAF L++
Sbjct: 534 QSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLS 593

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + P T +R+VKNLR+C DCH AIKLIS++Y RE+VVRDR+RFHHF+ G CSC+DYW
Sbjct: 594 SEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 43/318 (13%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AV  Y++M   G  PD +T+P LLKA+++ +        H+  ++ G      V  SLV 
Sbjct: 27  AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT 86

Query: 187 MYAAFGHVKDACKVFELMSERDL---VAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
            YAA G          L+SER+    V WN++I+G     +  EA   F +MA  G  P 
Sbjct: 87  AYAAGGDGA---AARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPT 143

Query: 244 GYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
             T VS+ SAC +  G + LG + H  V   G+  ++ V NAL+D Y++C  + +A ++F
Sbjct: 144 PVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLF 203

Query: 303 REMRKRNAVSWSTLVVGLAVNG--------FG-----------------------KEALE 331
             M+ R+ VSW++L+ GL   G        FG                       +EALE
Sbjct: 204 DGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALE 263

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--GCMVD 389
           +F+EM+       E T V V+ AC+  G ++ G  + +      GI  K++ F    ++D
Sbjct: 264 MFREMQCSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGI--KMDAFVGNALID 320

Query: 390 LLGRAGLVKQAYEYIQNM 407
           +  + G +++A +  ++M
Sbjct: 321 MYSKCGSIERALDVFKDM 338



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 8/249 (3%)

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           +A+  +  M + G  PD YT   L  A A   + A  R  H +V K G+  N +V  +L+
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL-AVNGFGKEALELFKEMEIGGFVPGE 345
             Y+  G   AA+ +  E  +   V W+ L+ G      FG EA   F +M   G  P  
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFG-EACCSFVDMARAGAAPTP 144

Query: 346 VTFVGVLYACSH-CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           VT+V VL AC    G V  G     R+    G++P +     +VD+      ++ A++  
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLF 203

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M +  + V W +LL   T  G     + AR    ++  + +  +  + + Y    R+ 
Sbjct: 204 DGMQV-RSVVSWTSLLSGLTRLGR---VDEARDLFGRMPERDTVSWTAMIDGYVQAARFR 259

Query: 465 NVQEVRRTM 473
              E+ R M
Sbjct: 260 EALEMFREM 268


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/557 (40%), Positives = 342/557 (61%), Gaps = 3/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           ++VH    RHG    +    +  + A+ +    +  A+ +F  + D  I +W ++I GYA
Sbjct: 193 RRVHGQIFRHG--FESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++  P+ A+ ++S+M  + ++PD      +L+A + + D+  G+  H   I+ G E    
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           +  SL  +YA  GHV  A   F  +    L+ WN++I+G+  NG   EA+ LFR M S+ 
Sbjct: 311 LLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN 370

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           + PD  T+ S  +ACA++G+L L R    Y+      ++V VN +L+D Y+KCG +  A+
Sbjct: 371 IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMAR 430

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF  +  ++ V WS ++VG  ++G G+E++ LF  M   G  P +VTFVG+L AC + G
Sbjct: 431 FVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSG 490

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG+  F RM+D YGI P+ +H+ C+VDLLGRAG + +AY ++ NM + P   +W  L
Sbjct: 491 LVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGAL 549

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L AC IH H  + E A   L  L+P ++G YV LSNLYA    W  V +VR  M ++ + 
Sbjct: 550 LSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLT 609

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K  G+S++E+  ++  F  GD++HP+++EI   + ++ ++LK  G+VP TE+V  D+  E
Sbjct: 610 KHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYE 669

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           E E+ L  HSE++AIA+ L++T PGT +R+ KNLR C +CH AIKLISK+ SREIVVRD 
Sbjct: 670 ETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDA 729

Query: 600 SRFHHFKDGHCSCRDYW 616
            RFHHFKDG CSC DYW
Sbjct: 730 CRFHHFKDGACSCGDYW 746



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 199/380 (52%), Gaps = 18/380 (4%)

Query: 56  KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWN 112
           K  L Q++A  +  G+       G +LI  +V+ +     +S A  +F    DP++F WN
Sbjct: 88  KTHLNQIYAKLLVTGL-----QYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWN 142

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            ++R Y+       A+E+Y++M V+ + PD  ++P +LKA S L  + MG + H    R+
Sbjct: 143 AIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH 202

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GFES VFVQN LV +YA  G +  A  VF  + +R +V+W S+I+G+A NG+P EAL +F
Sbjct: 203 GFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIF 262

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            EM    V PD   +VS+  A  ++  L  G+  H  V K+GL    ++  +L   Y+KC
Sbjct: 263 SEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKC 322

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G ++ A+  F ++   + + W+ ++ G   NG+ +EA+ELF+ M+     P  +T    +
Sbjct: 323 GHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSI 382

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEH----FGCMVDLLGRAGLVKQAYEYIQNML 408
            AC+  G ++       R  DEY  M +  +       ++D   + G V  A  ++ + +
Sbjct: 383 AACAQIGSLE-----LARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMA-RFVFDRI 436

Query: 409 MPPNAVIWRTLLGACTIHGH 428
              + V+W  ++    +HG 
Sbjct: 437 PDKDVVVWSAMMVGYGLHGQ 456


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/521 (42%), Positives = 330/521 (63%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  + D N+ TWN M+ G  +      A+ L+S+M+     PD ++   +L+  + 
Sbjct: 154 AKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAH 213

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+Q H+  ++ GFE  + V  SL HMY   G + D  +V   M +  LVAWN++
Sbjct: 214 LGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTL 273

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++G A  G     L  +  M   G  PD  T VS+ S+C+EL  L  G++ H    K G 
Sbjct: 274 MSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGA 333

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V+V ++L+  YS+CG +  + + F E ++R+ V WS+++     +G G+EA++LF E
Sbjct: 334 SSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNE 393

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME       E+TF+ +LYACSHCG+ D+G   F  M  +YG+  +++H+ C+VDLLGR+G
Sbjct: 394 MEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSG 453

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A   I++M +  +A+IW+TLL AC IH ++ IA      +L+++P+ S  YVLL+N
Sbjct: 454 CLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLAN 513

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+   RW NV EVRR M  + VKK PG S VE+ N+V +F MGD  HP+  EI+  L E
Sbjct: 514 IYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEE 573

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T ++K +GYVP T +V  D++ EEKE  L +HSEK+AIAF L+NT  G P+RV+KNLRV
Sbjct: 574 LTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRV 633

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C+DCH+AIK IS++   EI+VRD SRFHHFK+G CSC DYW
Sbjct: 634 CSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 44/326 (13%)

Query: 78  LGKYLIYAIVSLSFPMSYAHNIF--------SHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           +G++++ +    S P+ + ++IF        +H Q+      N          +   A E
Sbjct: 1   MGRFVV-SRTRFSVPIVFQNSIFRFSTISFKTHFQNGRFSDGNEQFATLCSKGHIREAFE 59

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
            +    +S I  +   +  LL+A   L  V +G+Q HS+   +G  S  F+ N L+++Y+
Sbjct: 60  SF----LSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYS 115

Query: 190 AFGHVKDA--------------CKV-----------------FELMSERDLVAWNSVING 218
            FG ++ A              C +                 F+ M +R++  WN+++ G
Sbjct: 116 KFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTG 175

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
                   EAL LF  M      PD Y++ S+   CA LGAL  G++ H YV K G   N
Sbjct: 176 LTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECN 235

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V  +L   Y K G +   +RV   M   + V+W+TL+ G A  G+ +  L+ +  M++
Sbjct: 236 LVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKM 295

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEG 364
            GF P ++TFV V+ +CS   ++ +G
Sbjct: 296 AGFRPDKITFVSVISSCSELAILCQG 321



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 152/314 (48%), Gaps = 19/314 (6%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E  + SV+R C  L  + A      +QVHA+ ++ G   N   +G  L +  +     M 
Sbjct: 201 EYSLGSVLRGCAHLGALLAG-----QQVHAYVMKCGFECNLV-VGCSLAHMYMKAG-SMH 253

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
               + + + D ++  WNT++ G A+       ++ Y  M ++G +PD  T+  ++ + S
Sbjct: 254 DGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCS 313

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +LA +  G+Q H+ A++ G  S V V +SLV MY+  G ++D+ K F    ERD+V W+S
Sbjct: 314 ELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSS 373

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKV 273
           +I  +  +G+  EA+ LF EM  E +  +  T +SL  AC+  G    G       V K 
Sbjct: 374 MIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKY 433

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALEL 332
           GL   +     L+D   + G +  A+ + R M  K +A+ W TL+           A ++
Sbjct: 434 GLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLL----------SACKI 483

Query: 333 FKEMEIGGFVPGEV 346
            K  EI   V  EV
Sbjct: 484 HKNAEIARRVADEV 497


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/567 (40%), Positives = 330/567 (58%), Gaps = 14/567 (2%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-----PNIFTWN 112
           +  Q+HA  +R G+ + +P        ++ ++S P   A  +  H        P+ F  N
Sbjct: 37  RFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCN 96

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           +++R  ++   P  A+    ++   G + +  T   LLK    LA  R   Q H+  +  
Sbjct: 97  SILRALSD---PSDALRFLCRVRALGRRGNAFTLAILLKPRCSLAHAR---QLHANVVAE 150

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G      +  SL+  YA  G    A K+F+ M  RD VAWN +I  +A N +  +AL LF
Sbjct: 151 GHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLF 210

Query: 233 REMASEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
            EM  +  E  PD  T + L  AC+ LGAL  G +   Y  + G    + V N+L+  Y 
Sbjct: 211 EEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYL 270

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  A RVF    +++ V+W+ ++ GLA NGFG +A+ +F+EM      P E TF G
Sbjct: 271 RCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTG 330

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN-MLM 409
           VL ACSH G+VDEGF +F  M+ EYG+ P + H+GC+VDL+GRAGL+ +AYE++ N M +
Sbjct: 331 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKV 390

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+A IWRTLLGAC IHGH  + E     L++L+ + +GDYVLL N YA    W  V E+
Sbjct: 391 APDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEI 450

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R+ M +E ++ TPG + VE    V EF   D +HP+  EI+  L+EI K+L++ GYVP  
Sbjct: 451 RKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNV 510

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
            +   D++ E KE AL+YHSEK+AIAF L+ T    P+R+ KNLRVC DCH   K+ S +
Sbjct: 511 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAI 570

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           Y R ++VRDR+RFHHF+ G CSC DYW
Sbjct: 571 YRRIVIVRDRTRFHHFQGGKCSCNDYW 597


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 346/570 (60%), Gaps = 38/570 (6%)

Query: 85  AIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIK 140
           A++SL   S     A + F  + D +I +WN+MI GY++    L A+ ++SKM +   +K
Sbjct: 213 ALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLK 272

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA---------- 190
           PD  T   +L A + L  + +G+Q H+  +R   E+   V N+L+ MYA           
Sbjct: 273 PDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLI 332

Query: 191 -----------------------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
                                   G+VK A ++F  + +RD+VAW ++I G+  NG  N+
Sbjct: 333 VEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWND 392

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL LFR M +EG EP+ YT+ ++ S  + L  L  G++ H    K G S   +V NAL+ 
Sbjct: 393 ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIA 452

Query: 288 FYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            Y+K G I  A+RVF     K+  VSW+++++ LA +G GKEA+ LF+ M   G  P  +
Sbjct: 453 MYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHI 512

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T+VGVL AC+H G+V++G  Y+  M + + I P + H+ CM+DL GRAGL+++AY +I++
Sbjct: 513 TYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIES 572

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+ + W +LL +C IH ++ +A++A   LL ++P +SG Y+ L+N+Y+   +W N 
Sbjct: 573 MPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENA 632

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
            + R+ M    V+K  G S + + N V  F + D  HPQ +EI+ ++AEI +++K  G++
Sbjct: 633 AQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFI 692

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P TE+V  D+EEE KE  L YHSEK+AIAF L+NT   T +R++KNLRVC DCH AIK I
Sbjct: 693 PDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFI 752

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SK+  REI+VRD +RFHHFKDG CSCRDYW
Sbjct: 753 SKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 223/538 (41%), Gaps = 148/538 (27%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           + VH   I+ G+      LG YL+  +++    +  + +AH++F  +   + F+WNT+I 
Sbjct: 30  RSVHCQIIKKGL-----HLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLIS 84

Query: 117 GYAESAN-----PLL--------------------------AVELYSKMHVSGIKPDTHT 145
           GYA+  N      LL                          A+ +++KM    + P   T
Sbjct: 85  GYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFT 144

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH------------ 193
              +L + +    + +G + HS  ++ G  S V V  SL++MYA  G             
Sbjct: 145 VSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMT 204

Query: 194 VKD-------------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           VK+                   A   FE M +RD+V+WNS+I+G++  G   EAL +F +
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSK 264

Query: 235 MASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA--------- 284
           M +E  ++PD +T+ S+ SACA L  L +G++ H Y+ +     +  V NA         
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 285 ------------------------LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
                                   LLD Y+K G +  A+ +F ++R R+ V+W+ ++VG 
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---------------- 364
             NG   +ALELF+ M   G  P   T   +L   S   +++ G                
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 365 ---------------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML- 408
                           +  KR+ D      +I  +  M+  L + GL K+A    + ML 
Sbjct: 445 SVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLS 504

Query: 409 --MPPNAVIWRTLLGACTIHGHSAIAEIAR------STLLQLEPKHSGDYVLLSNLYA 458
             M P+ + +  +L ACT   H  + E  R      + + ++EP  S  Y  + +LY 
Sbjct: 505 VGMKPDHITYVGVLSACT---HVGLVEQGRKYYNMMTEVHEIEPTLS-HYACMIDLYG 558



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 171/411 (41%), Gaps = 76/411 (18%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M V      +  +  +L+   ++ D   G   H   I+ G    V++ N+L+  YA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGK---------------P------------- 225
           ++ A  VF+ M  +   +WN++I+G+A  G                P             
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 226 ---NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              + A+ +F +M SE V P  +T+ ++ S+CA    L +GR+ H++V K+GL   V V 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 283 NALLDFYSKCGIIIAAQRV-------------------------------FREMRKRNAV 311
            +LL+ Y+KCG  + A+ V                               F +M  R+ V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 312 SWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           SW++++ G +  G+  EAL +F +M       P   T   +L AC++   ++ G     +
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG-----K 295

Query: 371 MKDEYGIMPKIEHFG----CMVDLLGRAGLVKQAYEYIQ-NMLMPPNAVIWRTLLGACTI 425
               Y +  + E  G     ++ +  ++G V+ A   ++ N     N + + +LL   T 
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
            G+    + AR    +L  +    +  +   Y     W +  E+ R MV E
Sbjct: 356 LGN---VKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 343/559 (61%), Gaps = 2/559 (0%)

Query: 58   KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
            +++QVH  +  HG+ L N  +   L+    S    +  A+ +F  +   +  +W+ M+ G
Sbjct: 753  QVRQVHXQASVHGM-LQNLIVANKLV-XFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 118  YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +A+  + +     + ++   G +PD +T PF+++A   L +++MG   H +  + G +  
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 178  VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             FV  +LV MY     ++DA  +F+ M ERDLV W  +I G+A  G  NE+L LF +M  
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 238  EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            EGV PD   MV++  ACA+LGA+   R    Y+ +     +V +  A++D ++KCG + +
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 990

Query: 298  AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            A+ +F  M ++N +SWS ++     +G G++AL+LF  M   G +P ++T V +LYACSH
Sbjct: 991  AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050

Query: 358  CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
             G+V+EG  +F  M ++Y +   ++H+ C+VDLLGRAG + +A + I +M    +  +W 
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 418  TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
              LGAC  H    +AE A ++LL+L+P++ G Y+LLSN+YA   RW +V ++R  M + R
Sbjct: 1111 AFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRR 1170

Query: 478  VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
            +KK PG + +E+ N+  +F +GD +HP+++EI+ ML  +  KL+L GYVP T  V  D++
Sbjct: 1171 LKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVD 1230

Query: 538  EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
            EE K   L  HSEK+AIAF L+ T   TP+R++KNLRVC DCH   KL+S +  R I+VR
Sbjct: 1231 EELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVR 1290

Query: 598  DRSRFHHFKDGHCSCRDYW 616
            D +RFHHFK+G CSC DYW
Sbjct: 1291 DANRFHHFKEGACSCGDYW 1309



 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 317/517 (61%), Gaps = 2/517 (0%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +++QVHA +  HG+ L N  +   LIY   S    +  A+ +F  +   +  +W+ M+ G
Sbjct: 77  QVRQVHAQASVHGM-LENIVVANKLIY-FYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 134

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           +A+  + +     + ++   G +PD +T PF+++A   L +++MG   H +  + G +  
Sbjct: 135 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 194

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            FV  +LV MY     ++DA  +F+ M ERDLV W  +I G+A  GK NE+L LF +M  
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV PD   MV++  ACA+LGA+   R    Y+ +     +V +  A++D Y+KCG + +
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 314

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ +F  M ++N +SWS ++     +G G++AL+LF  M   G +P ++T   +LYACSH
Sbjct: 315 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG  +F  M ++Y +   ++H+ C+VDLLGRAG + +A + I++M +  +  +W 
Sbjct: 375 AGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWG 434

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
             LGAC  H    +AE A ++LL+L+ ++ G YVLLSN+YA   RW +V ++R  M + R
Sbjct: 435 AFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRR 494

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KKTPG + +E+ N+  +F +GD +HP+++EI+ ML  ++ KL+L GYVP T  V  D++
Sbjct: 495 LKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVD 554

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           EE K   L  HSEK+AIAF L+ T   TP+R++KNLR
Sbjct: 555 EELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 143/285 (50%), Gaps = 8/285 (2%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           F + A+    ++    Q H+ A  +G    + V N L++ Y+ +  + DA  +F+ M  R
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+W+ ++ GFA  G        FRE+   G  PD YT+  +  AC +L  L +GR  H
Sbjct: 124 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH 183

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             V+K GL  +  V  AL+D Y KC  I  A+ +F +M++R+ V+W+ ++ G A  G   
Sbjct: 184 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 243

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF---SYFKRMKDEYGIMPKIEHF 384
           E+L LF++M   G VP +V  V V++AC+  G + +      Y +R K +  ++      
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA-- 301

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             M+D+  + G V+ A E    M    N + W  ++ A   HG  
Sbjct: 302 --MIDMYAKCGCVESAREIFDRM-EEKNVISWSAMIAAYGYHGQG 343


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 334/557 (59%), Gaps = 2/557 (0%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
            +Q+H   I  G+ L+  +LG  LI   +     +  A+ +F  ++  N+ +W  MI G+A
Sbjct: 607  RQIHMLIIESGLQLD-VNLGNALINMYIRCG-SLQDAYEVFHSLRHRNVMSWTAMIGGFA 664

Query: 120  ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +      A EL+ +M   G KP   T+  +LKA    A +  G++  +  + +G+E    
Sbjct: 665  DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724

Query: 180  VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            V N+L+  Y+  G + DA KVF+ M  RD+++WN +I G+A NG    AL    +M  +G
Sbjct: 725  VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 240  VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            V  + ++ VS+ +AC+   AL  G+R H  + K  +  +V V  AL+  Y+KCG +  AQ
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844

Query: 300  RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
             VF    ++N V+W+ ++   A +G   +AL+ F  M+  G  P   TF  +L AC+H G
Sbjct: 845  EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 360  MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            +V EG   F  ++ ++G+ P IEH+GC+V LLGRAG  ++A   I  M  PP+A +W TL
Sbjct: 905  LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 420  LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
            LGAC IHG+ A+AE A +  L+L  ++   YVLLSN+YA   RW +V ++RR M    ++
Sbjct: 965  LGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIR 1024

Query: 480  KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
            K PG S +E+ N + EF   DRSHP+T EI+  L  ++ +++  GY P T+ V  ++++E
Sbjct: 1025 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKE 1084

Query: 540  EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
             +E +L  HSE++AIA+ L+ T PGTP+R+ KNLR+C DCH A K ISK+  REI+ RD 
Sbjct: 1085 HQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 1144

Query: 600  SRFHHFKDGHCSCRDYW 616
            +RFH FK+G CSC D+W
Sbjct: 1145 NRFHTFKNGKCSCEDFW 1161



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 175/323 (54%), Gaps = 8/323 (2%)

Query: 46  ITLLQVCASSKH----KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +++L  C++SK     +L   H   + H    ++  +G  LI ++ +    +  A  +F+
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHS---SDVQIGNSLI-SMYARCGDLPRARELFN 444

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++ +WN +I GYA   +   A++LY +M   G+KP   T+  LL A +  +    
Sbjct: 445 TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  H   +R+G +S   + N+L++MY   G + +A  VFE    RD+++WNS+I G A 
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G    A  LF EM  EG+EPD  T  S+   C    AL LGR+ H  + + GL  +VN+
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL++ Y +CG +  A  VF  +R RN +SW+ ++ G A  G  ++A ELF +M+  GF
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 342 VPGEVTFVGVLYACSHCGMVDEG 364
            P + TF  +L AC     +DEG
Sbjct: 685 KPVKSTFSSILKACMSSACLDEG 707



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 199/393 (50%), Gaps = 18/393 (4%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           LL  C +S      K +H   +R G+  N      +L  A++++      +  A N+F  
Sbjct: 492 LLSACTNSSAYSDGKMIHEDILRSGIKSNG-----HLANALMNMYRRCGSIMEAQNVFEG 546

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            +  +I +WN+MI G+A+  +   A +L+ +M   G++PD  T+  +L        + +G
Sbjct: 547 TRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG 606

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H + I +G +  V + N+L++MY   G ++DA +VF  +  R++++W ++I GFA  
Sbjct: 607 RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+  +A  LF +M ++G +P   T  S+  AC     L  G++   ++   G   +  V 
Sbjct: 667 GEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG 726

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  YSK G +  A++VF +M  R+ +SW+ ++ G A NG G  AL+   +M+  G V
Sbjct: 727 NALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVV 786

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMVDLLGRAGLVKQ 399
             + +FV +L ACS    ++EG    KR+  E     +   +     ++ +  + G +++
Sbjct: 787 LNKFSFVSILNACSSFSALEEG----KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEE 842

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           A E   N     N V W  ++ A   HG ++ A
Sbjct: 843 AQEVFDN-FTEKNVVTWNAMINAYAQHGLASKA 874



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K++H  ++  G+   N D+  G  L    V     ++ A        D ++  +N +I  
Sbjct: 304 KRIHKLAVNEGL---NSDIRVGTALATMFVRCG-DVAGAKQALEAFADRDVVVYNALIAA 359

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            A+  +   A E Y +M   G+  +  TY  +L A S    +  GE  HS     G  S 
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V + NSL+ MYA  G +  A ++F  M +RDL++WN++I G+A      EA+ L+++M S
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV+P   T + L SAC    A + G+  H  + + G+  N ++ NAL++ Y +CG I+ 
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIME 539

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           AQ VF   R R+ +SW++++ G A +G  + A +LF EM+  G  P ++TF  VL  C +
Sbjct: 540 AQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKN 599

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
              ++ G      +  E G+   +     ++++  R G ++ AYE   + L   N + W 
Sbjct: 600 PEALELG-RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS-LRHRNVMSWT 657

Query: 418 TLLGACTIHG 427
            ++G     G
Sbjct: 658 AMIGGFADQG 667



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 178/339 (52%), Gaps = 16/339 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +FS +   ++ ++NTM+  YA+ A     + L+ +M   GI PD  TY  LL A + 
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + +  G++ H +A+  G  S + V  +L  M+   G V  A +  E  ++RD+V +N++
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNAL 356

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I   A +G   EA   + +M S+GV  +  T +S+ +AC+   AL  G   H+++ +VG 
Sbjct: 357 IAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH 416

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S +V + N+L+  Y++CG +  A+ +F  M KR+ +SW+ ++ G A      EA++L+K+
Sbjct: 417 SSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQ 476

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG----CMVDLL 391
           M+  G  PG VTF+ +L AC++     +G     +M  E  +   I+  G     ++++ 
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDG-----KMIHEDILRSGIKSNGHLANALMNMY 531

Query: 392 GRAGLVKQAYEYIQNMLMPPNA---VIWRTLLGACTIHG 427
            R G + +A    QN+     A   + W +++     HG
Sbjct: 532 RRCGSIMEA----QNVFEGTRARDIISWNSMIAGHAQHG 566



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 185/392 (47%), Gaps = 13/392 (3%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPD--LGKYLIYAIV 87
           A Q  P  +     + L+Q C   +   + K++HA  +  GV    PD  L   LI   V
Sbjct: 72  AYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGV---GPDIFLSNLLINMYV 128

Query: 88  SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
                +S AH +F  +   ++ +WN++I  YA+      A +L+ +M  +G  P   TY 
Sbjct: 129 KCR-SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYI 187

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +L A    A++  G++ HS  I  G++    VQNSL++MY     +  A +VF  +  R
Sbjct: 188 SILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR 247

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D+V++N+++  +A      E + LF +M+SEG+ PD  T ++L  A      L  G+R H
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
                 GL+ ++ V  AL   + +CG +  A++       R+ V ++ L+  LA +G  +
Sbjct: 308 KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYE 367

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EA E + +M   G V    T++ VL ACS    +  G         E G    ++    +
Sbjct: 368 EAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSL 426

Query: 388 VDLLGRAGLVKQAYEYIQNM----LMPPNAVI 415
           + +  R G + +A E    M    L+  NA+I
Sbjct: 427 ISMYARCGDLPRARELFNTMPKRDLISWNAII 458


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 370/646 (57%), Gaps = 61/646 (9%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLI 83
           + H    ++ + I S+V     +L  CAS K   ++K++H+++IR+G    +  +   LI
Sbjct: 247 IVHEKATNERSDIISIV----NILPACASLKALPQIKEIHSYAIRNGT-FADAFVCNALI 301

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH-------- 135
                    M+ A  +F+ ++  ++ +WN M+ GY +S N   A EL+  M         
Sbjct: 302 DTYAKCG-SMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 136 ---------------------------VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
                                      + G +P++ T   LL A + L  +  G + H+ 
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 169 AIRNGFESL------------VFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNS 214
           +++    SL            + V N+L+ MY+     K A  +F+ +   ER++V W  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 215 VINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +I G+A  G  N+AL +F EM S+   V P+ YT+  +  ACA L AL +G++ H YV +
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 273 VGLSDN--VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
               +     V N L+D YSKCG +  A+ VF  M KRN VSW++++ G  ++G GKEAL
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++F +M+  GFVP +++F+ +LYACSH GMVD+G +YF  M+ +Y ++   EH+ C++DL
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDL 660

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           L R G + +A++ IQ M M P+AVIW  LL AC +H +  +AE A + L+ ++ ++ G Y
Sbjct: 661 LARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSY 720

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
            L+SN+YA  +RW +V  +R+ M K  +KK PG S V+       FF+GDRSHP + EI+
Sbjct: 721 TLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIY 780

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
           ++L  +  ++K+ GYVP T     D+++EEK + LS HSEK+A+A+ L+ T+PG P+R+ 
Sbjct: 781 SLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRIT 840

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH A   ISK+   EI+VRD SRFHHFK+G CSC  YW
Sbjct: 841 KNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 179/379 (47%), Gaps = 59/379 (15%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHV------SGIKPDTHTYPFLLKAISKLADVR 160
           ++ +WN+++  + + +NP  A+EL+S+M +      +  + D  +   +L A + L  + 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN------- 213
             ++ HS AIRNG  +  FV N+L+  YA  G + DA KVF +M  +D+V+WN       
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYT 336

Query: 214 ----------------------------SVINGFASNGKPNEALTLFREMASEGVEPDGY 245
                                       +VI G+A  G   EAL  F++M  +G EP+  
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV 396

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGL------------SDNVNVNNALLDFYSKCG 293
           T++SL SACA LGAL+ G   H Y  K  L             +++ V NAL+D YSKC 
Sbjct: 397 TIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCR 456

Query: 294 IIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVTFV 349
              AA+ +F  +  R+RN V+W+ ++ G A  G   +AL++F EM  +     P   T  
Sbjct: 457 SFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTIS 516

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNML 408
            +L AC+H   +  G      +   +   P +     C++D+  + G V  A     +M 
Sbjct: 517 CILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSM- 575

Query: 409 MPPNAVIWRTLLGACTIHG 427
              N V W +++    +HG
Sbjct: 576 PKRNEVSWTSMMSGYGMHG 594



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 145/299 (48%), Gaps = 44/299 (14%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WN ++R + +  +   A+ +  +M  +G KPD  T P+ LKA  +L     G   H +  
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLIC 176

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSVINGFASNGKPNE 227
            NGFES VFV N+LV MY+  G ++DA  VF+ ++ +   D+++WNS++        P  
Sbjct: 177 CNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236

Query: 228 ALTLFREMA------SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           AL LF EM+      +     D  ++V++  ACA L AL   +  H+Y  + G   +  V
Sbjct: 237 ALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFV 296

Query: 282 NNALLDFYSKCGIIIAAQRV-------------------------------FREMRKRN- 309
            NAL+D Y+KCG +  A +V                               F  MRK N 
Sbjct: 297 CNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENI 356

Query: 310 ---AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
               ++WS ++ G A  G  +EAL+ F++M + G  P  VT + +L AC+  G + +G 
Sbjct: 357 PLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGM 415



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V  Y A G  KDA  V E ++    V WN ++      G  + A+ +   M   G +PD
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+     AC EL +   GR  H  +   G   NV V NAL+  YS+CG +  A  VF 
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 304 EMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           E+ ++   + +SW+++V         + ALELF EM +
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSM 246


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/521 (41%), Positives = 332/521 (63%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D NI +W +MI GY ++  P+ A+ ++ +M    +KPD      +L+A + 
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D+  G+  H   ++ G E    +  SL  MYA  G V  A   F+ M   +++ WN++
Sbjct: 283 VEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAM 342

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A NG  NEA+ LF+EM S+ +  D  T+ S   ACA++G+L L +    Y+ K   
Sbjct: 343 ISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY 402

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            ++V VN AL+D ++KCG +  A+ VF     ++ V WS ++VG  ++G G++A++LF  
Sbjct: 403 RNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYA 462

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P +VTFVG+L AC+H G+V+EG+  F  MK  YGI  + +H+ C+VDLLGR+G
Sbjct: 463 MKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSG 521

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +AY++I  M + P   +W  LLGAC I+ H  + E A   L  L+P ++G YV LSN
Sbjct: 522 HLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSN 581

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           LYA  + W +V +VR  M ++ + K  G+SL+E+  ++  F +GD+SHP+ +EI   L  
Sbjct: 582 LYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELES 641

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + ++LK  G++P  E+V  D+ +EEKE+ L  HSE++AIA+ L++TAPGT +R+ KNLR 
Sbjct: 642 LERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRA 701

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C +CH A KLISK+ +REIVVRD +RFHHFK+G CSCRDYW
Sbjct: 702 CINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 199/386 (51%), Gaps = 22/386 (5%)

Query: 56  KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWN 112
           K  L Q+HA  +  G+  +      +L+   V+ S+    + YA  +F    +P++F WN
Sbjct: 84  KRHLNQIHAQLVVSGLVESG-----FLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWN 138

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +IRGY+       A+E+YS+M  SG+ PD  T P +LKA S +  + +G++ H    R 
Sbjct: 139 AIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRL 198

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GFES VFVQN LV +YA  G V+ A  VFE + +R++V+W S+I+G+  NG P EAL +F
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIF 258

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            +M    V+PD   +VS+  A  ++  L  G+  H  V K+GL    ++  +L   Y+KC
Sbjct: 259 GQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKC 318

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G ++ A+  F +M   N + W+ ++ G A NG+  EA+ LF+EM         +T    +
Sbjct: 319 GQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAI 378

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG------CMVDLLGRAGLVKQAYEYIQN 406
            AC+  G +D      K M D    + K E+         ++D+  + G V  A E    
Sbjct: 379 LACAQVGSLDLA----KWMGD---YINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIA 432
            L   + V+W  ++    +HG    A
Sbjct: 432 TL-DKDVVVWSAMIVGYGLHGRGQDA 456


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/542 (41%), Positives = 325/542 (59%), Gaps = 32/542 (5%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W ++I  Y+ +     AV  +  M   GI PD  T   +L A +KL D+ +G   H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 167 SVAIRNGF---ESLVFVQ-----------------------------NSLVHMYAAFGHV 194
            +    G    E+LV                                N+++  Y   GHV
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  +F+ M  RD++ +NS++ G+  +G+  EAL LF  M    +  D +T+V+L +AC
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A LGAL  GR  H  + +  +  ++ +  ALLD Y KCG +  A  VF+ M KR+  +W+
Sbjct: 383 ASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWT 442

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GLA NG GK ALE F +M   GF P  V+++ VL ACSH  +++EG  YF  M+  
Sbjct: 443 AMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL 502

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           Y I P+IEH+GCM+DLLGR+GL+ +A + ++ M + PNAVIW ++L AC +H H  +A+ 
Sbjct: 503 YNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQC 562

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   LL+LEP   G YV L N+Y   ++W N  ++R  M + +VKKT G+S + +  +V 
Sbjct: 563 AAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVH 622

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           +F + D+SHP+  EI AML EI+ +LK  GY P T  +  D++EEEKE AL  HSEK+AI
Sbjct: 623 KFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAI 682

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF L+N AP  PV + KNLRVC DCH AIKLIS++++REI+VRDRSRFHHF++G CSC D
Sbjct: 683 AFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCND 742

Query: 615 YW 616
           +W
Sbjct: 743 FW 744



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 170/353 (48%), Gaps = 46/353 (13%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP----MSYAHNIFSHVQDPNIFTWNTMIR 116
           ++HA     G  L +P   ++L+ ++V+   P    + YA ++F  +  P+ F ++T +R
Sbjct: 17  ELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALR 75

Query: 117 GYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRN 172
             + + ++P     L+ +M  +G++PD  T+ FL K  S  +    + +    H+  +R 
Sbjct: 76  ACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRT 135

Query: 173 GFESLV-FVQNSLVHMYAAFG------------HVKDA----------------CKVFEL 203
              S   FV NSL+HMY   G            HVKDA                C    L
Sbjct: 136 MLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL 195

Query: 204 MSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           +S+   RD+++W S+I  ++   +  EA+  F+ M S G+ PD  T++++ SACA+L  L
Sbjct: 196 LSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL 255

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVG 319
            LGR  H  V + G+  + N+  AL+D Y+KCG    AQ+VF  + R     SW+ ++ G
Sbjct: 256 ELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
              +G    A  LF EME+       +TF  ++    H G + E    F  M+
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSMR 364



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  ++  +I T+N+M+ GY  S     A+ L+  M    ++ D  T   LL A + 
Sbjct: 325 ARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACAS 384

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  ++ G   H+   +   E+ +++  +L+ MY   G V +A  VF+ M +RD+  W ++
Sbjct: 385 LGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAM 444

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG    AL  F +M  +G +P+  + +++ +AC+    L  GR    Y  ++ +
Sbjct: 445 IAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGR---LYFDEMRI 501

Query: 276 SDNVNVN----NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN 323
             N++        ++D   + G++  A  + + M  + NAV W++++    V+
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 41/287 (14%)

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
           H++ A  +F+ M     +   ++     +   P+    LFR M   GV PDG+T   LF 
Sbjct: 52  HLRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK 111

Query: 253 ACAELG---ALALGRRAHTYVWKVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKR 308
             +      +L L    H    +  L      V+N+L+  Y + G+   A+R F E+  +
Sbjct: 112 CSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVK 171

Query: 309 NAVSWSTLVVGLAVNGF-------------------------------GKEALELFKEME 337
           +AV+W+ L+ GLA  G                                 +EA+  FK M 
Sbjct: 172 DAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTML 231

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGL 396
             G  P EVT + VL AC+    ++ G S    + +E G MP  E+    ++D+  + G 
Sbjct: 232 SHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKG-MPTSENLVVALIDMYAKCGD 289

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
              A +    +   P    W  ++     HGH    ++ARS   ++E
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH---VDVARSLFDEME 333


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 350/572 (61%), Gaps = 18/572 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++++G    N  +G  L+    +    +S    +F  + D  I  WN MI GY+
Sbjct: 235 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS-GRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++ +   A+ L+  M  S G+  ++ T   ++ A  +       E  H   ++ G +   
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--- 235
           FVQN+L+ MY+  G +  A ++F  M +RDLV WN++I G+  +    +AL L  +M   
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 413

Query: 236 ---ASEG-----VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
               S+G     ++P+  T++++  +CA L ALA G+  H Y  K  L+ +V V +AL+D
Sbjct: 414 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 473

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG +  +++VF ++ ++N ++W+ +++   ++G G+EA++L + M + G  P EVT
Sbjct: 474 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 533

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           F+ V  ACSH GMVDEG   F  MK +YG+ P  +H+ C+VDLLGRAG +K+AY+ +   
Sbjct: 534 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-- 591

Query: 408 LMPPN---AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           +MP +   A  W +LLGA  IH +  I EIA   L+QLEP  +  YVLL+N+Y+    W 
Sbjct: 592 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 651

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
              EVRR M ++ V+K PG S +E G+ V +F  GD SHPQ+E++   L  + ++++ EG
Sbjct: 652 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 711

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T  V  ++EE+EKE  L  HSEK+AIAF ++NT+PGT +RV KNLRVC DCHLA K
Sbjct: 712 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 771

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISK+  REI++RD  RFH FK+G CSC DYW
Sbjct: 772 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 181/399 (45%), Gaps = 21/399 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA   + G  +++  +   L+  +          + +F  + + N  +WN++I    
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLV-NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 88

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL---ADVRMGEQTHSVAIRNGFES 176
                 +A+E +  M    ++P + T   ++ A S L     + MG+Q H+  +R G E 
Sbjct: 89  SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 147

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+ N+LV MY   G +  +  +      RDLV WN+V++    N +  EAL   REM 
Sbjct: 148 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 207

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGII 295
            EGVEPD +T+ S+  AC+ L  L  G+  H Y  K G L +N  V +AL+D Y  C  +
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 267

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
           ++ +RVF  M  R    W+ ++ G + N   KEAL LF  M E  G +    T  GV+ A
Sbjct: 268 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPK----IEHF--GCMVDLLGRAGLVKQAYEYIQNML 408
           C   G        F R +  +G + K     + F    ++D+  R G +  A      M 
Sbjct: 328 CVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM- 379

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
              + V W T++       H   A +    +  LE K S
Sbjct: 380 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 418



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 131/235 (55%), Gaps = 5/235 (2%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFG 192
           M V GIKPD + +P LLKA++ L D+ +G+Q H+   + G+    V V N+LV++Y   G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
                 KVF+ +SER+ V+WNS+I+   S  K   AL  FR M  E VEP  +T+VS+ +
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 253 ACAEL---GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           AC+ L     L +G++ H Y  + G   N  + N L+  Y K G + +++ +      R+
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            V+W+T++  L  N    EALE  +EM + G  P E T   VL ACSH  M+  G
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 350/572 (61%), Gaps = 18/572 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++++G    N  +G  L+    +    +S    +F  + D  I  WN MI GY+
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS-GRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++ +   A+ L+  M  S G+  ++ T   ++ A  +       E  H   ++ G +   
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--- 235
           FVQN+L+ MY+  G +  A ++F  M +RDLV WN++I G+  +    +AL L  +M   
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 236 ---ASEG-----VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
               S+G     ++P+  T++++  +CA L ALA G+  H Y  K  L+ +V V +AL+D
Sbjct: 501 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG +  +++VF ++ ++N ++W+ +++   ++G G+EA++L + M + G  P EVT
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           F+ V  ACSH GMVDEG   F  MK +YG+ P  +H+ C+VDLLGRAG +K+AY+ +   
Sbjct: 621 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-- 678

Query: 408 LMPPN---AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           +MP +   A  W +LLGA  IH +  I EIA   L+QLEP  +  YVLL+N+Y+    W 
Sbjct: 679 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 738

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
              EVRR M ++ V+K PG S +E G+ V +F  GD SHPQ+E++   L  + ++++ EG
Sbjct: 739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T  V  ++EE+EKE  L  HSEK+AIAF ++NT+PGT +RV KNLRVC DCHLA K
Sbjct: 799 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 858

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISK+  REI++RD  RFH FK+G CSC DYW
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 14/286 (4%)

Query: 92  PMSYAHNIFSHVQD-PNIFT--------WNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           P S   ++ S V   P+IF         W  ++R    S     AV  Y  M V GIKPD
Sbjct: 37  PTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPD 96

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVF 201
            + +P LLKA++ L D+ +G+Q H+   + G+    V V N+LV++Y   G      KVF
Sbjct: 97  NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVF 156

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG--- 258
           + +SER+ V+WNS+I+   S  K   AL  FR M  E VEP  +T+VS+ +AC+ L    
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            L +G++ H Y  + G   N  + N L+  Y K G + +++ +      R+ V+W+T++ 
Sbjct: 217 GLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            L  N    EALE  +EM + G  P E T   VL ACSH  M+  G
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 181/399 (45%), Gaps = 21/399 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA   + G  +++  +   L+  +          + +F  + + N  +WN++I    
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLV-NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 175

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRNGFES 176
                 +A+E +  M    ++P + T   ++ A S L     + MG+Q H+  +R G E 
Sbjct: 176 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 234

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+ N+LV MY   G +  +  +      RDLV WN+V++    N +  EAL   REM 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGII 295
            EGVEPD +T+ S+  AC+ L  L  G+  H Y  K G L +N  V +AL+D Y  C  +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
           ++ +RVF  M  R    W+ ++ G + N   KEAL LF  M E  G +    T  GV+ A
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPK----IEHF--GCMVDLLGRAGLVKQAYEYIQNML 408
           C   G        F R +  +G + K     + F    ++D+  R G +  A      M 
Sbjct: 415 CVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM- 466

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
              + V W T++       H   A +    +  LE K S
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 343/571 (60%), Gaps = 4/571 (0%)

Query: 48  LLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+ C  ASS+     +H+  ++ G   N+       + +I S S  ++ AH +F  + D
Sbjct: 117 VLKACTRASSRKLGIDLHSLVVKCG--FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPD 174

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ TW  +  GY  S     A++L+ KM   G+KPD++    +L A   + D+  GE  
Sbjct: 175 RSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWI 234

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
                    +   FV+ +LV++YA  G ++ A  VF+ M E+D+V W+++I G+ASN  P
Sbjct: 235 VKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFP 294

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            E + LF +M  E ++PD +++V   S+CA LGAL LG    + + +     N+ + NAL
Sbjct: 295 KEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANAL 354

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D Y+KCG +     VF+EM++++ V  +  + GLA NG  K +  +F + E  G  P  
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            TF+G+L  C H G++ +G  +F  +   Y +   +EH+GCMVDL GRAG++  AY  I 
Sbjct: 415 STFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLIC 474

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           +M M PNA++W  LL  C +   + +AE     L+ LEP ++G+YV LSN+Y+   RW  
Sbjct: 475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDE 534

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             EVR  M K+ +KK PG+S +EL  +V EF   D+SHP +++I+A L ++  +++L G+
Sbjct: 535 AAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGF 594

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP TE VF D+EEEEKE  L YHSEK+A+A  L++T  G  +RVVKNLRVC DCH  +KL
Sbjct: 595 VPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKL 654

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ISK+  REIVVRD +RFH F +G CSC DYW
Sbjct: 655 ISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 215/415 (51%), Gaps = 15/415 (3%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMS 94
           TS V++  TL+ V  +  H LKQ+H   I H +     L N  L + L +          
Sbjct: 10  TSKVQQIKTLISVACTVNH-LKQIHVSLINHHLHHDTFLVNLLLKRTLFFR------QTK 62

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           Y++ +FSH Q PNIF +N++I G+  +      ++L+  +   G+     T+P +LKA +
Sbjct: 63  YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACT 122

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           + +  ++G   HS+ ++ GF   V    SL+ +Y+  G + DA K+F+ + +R +V W +
Sbjct: 123 RASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTA 182

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           + +G+ ++G+  EA+ LF++M   GV+PD Y +V + SAC  +G L  G     Y+ ++ 
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  N  V   L++ Y+KCG +  A+ VF  M +++ V+WST++ G A N F KE +ELF 
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M      P + + VG L +C+  G +D G  +   + D +  +  +     ++D+  + 
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKC 361

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           G + + +E  + M    + VI    +     +GH   + A   ++  L + P  S
Sbjct: 362 GAMARGFEVFKEM-KEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 350/572 (61%), Gaps = 18/572 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++++G    N  +G  L+    +    +S    +F  + D  I  WN MI GY+
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS-GRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           ++ +   A+ L+  M  S G+  ++ T   ++ A  +       E  H   ++ G +   
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--- 235
           FVQN+L+ MY+  G +  A ++F  M +RDLV WN++I G+  +    +AL L  +M   
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 236 ---ASEG-----VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
               S+G     ++P+  T++++  +CA L ALA G+  H Y  K  L+ +V V +AL+D
Sbjct: 501 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG +  +++VF ++ ++N ++W+ +++   ++G G+EA++L + M + G  P EVT
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           F+ V  ACSH GMVDEG   F  MK +YG+ P  +H+ C+VDLLGRAG +K+AY+ +   
Sbjct: 621 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMN-- 678

Query: 408 LMPPN---AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           +MP +   A  W +LLGA  IH +  I EIA   L+QLEP  +  YVLL+N+Y+    W 
Sbjct: 679 MMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWD 738

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
              EVRR M ++ V+K PG S +E G+ V +F  GD SHPQ+E++   L  + ++++ EG
Sbjct: 739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP T  V  ++EE+EKE  L  HSEK+AIAF ++NT+PGT +RV KNLRVC DCHLA K
Sbjct: 799 YVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATK 858

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            ISK+  REI++RD  RFH FK+G CSC DYW
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 14/286 (4%)

Query: 92  PMSYAHNIFSHVQD-PNIFT--------WNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           P S   ++ S V   P+IF         W  ++R    S     AV  Y  M V GIKPD
Sbjct: 37  PTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPD 96

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVF 201
            + +P LLKA++ L D+ +G+Q H+   + G+    V V N+LV++Y   G      KVF
Sbjct: 97  NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVF 156

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG--- 258
           + +SER+ V+WNS+I+   S  K   AL  FR M  E VEP  +T+VS+ +AC+ L    
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            L +G++ H Y  + G   N  + N L+  Y K G + +++ +      R+ V+W+T++ 
Sbjct: 217 GLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            L  N    EALE  +EM + G  P E T   VL ACSH  M+  G
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 181/399 (45%), Gaps = 21/399 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA   + G  +++  +   L+  +          + +F  + + N  +WN++I    
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLV-NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 175

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRNGFES 176
                 +A+E +  M    ++P + T   ++ A S L     + MG+Q H+  +R G E 
Sbjct: 176 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 234

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+ N+LV MY   G +  +  +      RDLV WN+V++    N +  EAL   REM 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGII 295
            EGVEPD +T+ S+  AC+ L  L  G+  H Y  K G L +N  V +AL+D Y  C  +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
           ++ +RVF  M  R    W+ ++ G + N   KEAL LF  M E  G +    T  GV+ A
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPK----IEHF--GCMVDLLGRAGLVKQAYEYIQNML 408
           C   G        F R +  +G + K     + F    ++D+  R G +  A      M 
Sbjct: 415 CVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM- 466

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
              + V W T++       H   A +    +  LE K S
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 346/570 (60%), Gaps = 38/570 (6%)

Query: 85  AIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIK 140
           A++SL   S     A + F  + D +I +WN+MI GY++    L A+ ++SKM +   +K
Sbjct: 213 ALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLK 272

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA---------- 190
           PD  T   +L A + L  + +G+Q H+  +R   E+   V N+L+ MYA           
Sbjct: 273 PDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLI 332

Query: 191 -----------------------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
                                   G+VK A ++F  + +RD+VAW ++I G+  NG  N+
Sbjct: 333 VEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWND 392

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL LFR M +EG EP+ YT+ ++ S  + L  L  G++ H    K G S   +V NAL+ 
Sbjct: 393 ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIA 452

Query: 288 FYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            Y+K G I  A+RVF     K+  VSW+++++ LA +G GKEA+ LF+ M   G  P  +
Sbjct: 453 MYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHI 512

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T+VGVL AC+H G+V++G  Y+  M + + I P + H+ CM+DL GRAGL+++AY +I++
Sbjct: 513 TYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIES 572

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+ + W +LL +C IH ++ +A++A   LL ++P +SG Y+ L+N+Y+   +W N 
Sbjct: 573 MPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENA 632

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
            + R+ M    V+K  G S + + N V  F + D  HPQ +EI+ ++AEI +++K  G++
Sbjct: 633 AQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFI 692

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P TE+V  D+EEE KE  L YHSEK+AIAF L+NT   T +R++KNLRVC DCH AIK I
Sbjct: 693 PDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFI 752

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SK+  REI+VRD +RFHHFKDG CSCRDYW
Sbjct: 753 SKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 223/538 (41%), Gaps = 148/538 (27%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           + VH   I+ G+      LG YL+  +++    +  + +AH++F  +   + F+WNT+I 
Sbjct: 30  RSVHCQIIKKGL-----HLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLIS 84

Query: 117 GYAESAN-----PLL--------------------------AVELYSKMHVSGIKPDTHT 145
           GYA+  N      LL                          A+ +++KM    + P   T
Sbjct: 85  GYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFT 144

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH------------ 193
              +L + +    + +G + HS  ++ G  S V V  SL++MYA  G             
Sbjct: 145 VSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMT 204

Query: 194 VKD-------------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           VK+                   A   FE M +RD+V+WNS+I+G++  G   EAL +F +
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSK 264

Query: 235 MASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA--------- 284
           M +E  ++PD +T+ S+ SACA L  L +G++ H Y+ +     +  V NA         
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 285 ------------------------LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
                                   LLD Y+K G +  A+ +F ++R R+ V+W+ ++VG 
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---------------- 364
             NG   +ALELF+ M   G  P   T   +L   S   +++ G                
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 365 ---------------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML- 408
                           +  KR+ D      +I  +  M+  L + GL K+A    + ML 
Sbjct: 445 SVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLS 504

Query: 409 --MPPNAVIWRTLLGACTIHGHSAIAEIAR------STLLQLEPKHSGDYVLLSNLYA 458
             M P+ + +  +L ACT   H  + E  R      + + ++EP  S  Y  + +LY 
Sbjct: 505 VGMKPDHITYVGVLSACT---HVGLVEQGRKYYNMMTEVHEIEPTLS-HYACMIDLYG 558



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 171/411 (41%), Gaps = 76/411 (18%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M V      +  +  +L+   ++ D   G   H   I+ G    V++ N+L+  YA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGK---------------P------------- 225
           ++ A  VF+ M  +   +WN++I+G+A  G                P             
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 226 ---NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              + A+ +F +M SE V P  +T+ ++ S+CA    L +GR+ H++V K+GL   V V 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 283 NALLDFYSKCGIIIAAQRV-------------------------------FREMRKRNAV 311
            +LL+ Y+KCG  + A+ V                               F +M  R+ V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 312 SWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           SW++++ G +  G+  EAL +F +M       P   T   +L AC++   ++ G     +
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG-----K 295

Query: 371 MKDEYGIMPKIEHFG----CMVDLLGRAGLVKQAYEYIQ-NMLMPPNAVIWRTLLGACTI 425
               Y +  + E  G     ++ +  ++G V+ A   ++ N     N + + +LL   T 
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
            G+    + AR    +L  +    +  +   Y     W +  E+ R MV E
Sbjct: 356 LGN---VKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/530 (42%), Positives = 323/530 (60%), Gaps = 9/530 (1%)

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--------HVSGIKPDTHTYP 147
            A  +F  +   N+ +W +MI GY ++     A+ L+             + +  D+    
Sbjct: 1196 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 1255

Query: 148  FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
             +L A S+++   + E  H   ++ GF+  + V N+L+  YA  G    + KVF+ M E+
Sbjct: 1256 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 1315

Query: 208  DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRA 266
            D ++WNS+I  +A +G   EAL +F  M    GV  +  T+ ++  ACA  GAL  G+  
Sbjct: 1316 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 1375

Query: 267  HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
            H  V K+ L  NV V  +++D Y KCG +  A++ F  M+++N  SW+ +V G  ++G  
Sbjct: 1376 HDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRA 1435

Query: 327  KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
            KEAL++F +M   G  P  +TFV VL ACSH G+V+EG+ +F  MK +Y I P IEH+GC
Sbjct: 1436 KEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC 1495

Query: 387  MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
            MVDL GRAG + +AY  I+ M M P+ V+W +LLGAC IH +  + EIA   L +L+P +
Sbjct: 1496 MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDN 1555

Query: 447  SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
             G YVLLSNLYA   RW +V+ +R  M   ++ K PG SLVEL  RV  F +GD+ HP  
Sbjct: 1556 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHH 1615

Query: 507  EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
            E I+  L ++T +L+  GYVP   +V  D++EEEKE  L  HSEK+A+AF ++N+APGT 
Sbjct: 1616 EMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTT 1675

Query: 567  VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            + ++KNLRVC DCH  IKLISK+  R+ VVRD  RFHHFKDG CSC DYW
Sbjct: 1676 INIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 157/419 (37%), Positives = 223/419 (53%), Gaps = 40/419 (9%)

Query: 19  LPCRVKSLYHSTPASQENPITSV----VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN 74
           +PC   S  H    S+  P+T       +K + LLQ C + KH L+Q+HA  IR G+  N
Sbjct: 2   VPCL--SYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKH-LRQIHAKIIRSGLS-N 57

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           +  L + LI+ + S    ++YA  +F  +Q+P  FTWN +IR    +     A+ LY  M
Sbjct: 58  DQLLTRKLIH-LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM 116

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
              GI  D  T+PF++KA +    + +G+  H   I+ GF   VFVQN+L+  Y   GH 
Sbjct: 117 VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 195 KDACKVFELMSERDLVAWNSVI-------------------------------NGFASNG 223
           + A KVFE M  R++V+W +VI                               NG+  N 
Sbjct: 177 RFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQ 236

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +P EAL LF+ M +E + P+ YTMVSL  AC E+G L LGR  H Y  K  +   V +  
Sbjct: 237 QPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGT 296

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D YSKCG I  A  VF  M +++  +W++++  L V+G G+EAL LF EME     P
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKP 356

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             +TF+GVL AC H   V EG +YF RM   YGI P  EH+ CM +L  R+  + +A++
Sbjct: 357 DAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 182/355 (51%), Gaps = 23/355 (6%)

Query: 92   PMSYAHNI----FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
            P+S + N+    + +V   N+ +WN++I   A   + + A+  +S +   G+ P   ++P
Sbjct: 1087 PVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFP 1146

Query: 148  FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
              +K+ S L D+  G  +H  A   GFE+ +FV ++L+ MY+  G +KDA  +F+ +  R
Sbjct: 1147 CTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR 1206

Query: 208  DLVAWNSVINGFASNGKPNEALTLFREMASEGVEP--------DGYTMVSLFSACAELGA 259
            ++V+W S+I G+  N + + AL LF++   E  E         D   MVS+ SAC+ +  
Sbjct: 1207 NVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSG 1266

Query: 260  LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
              +    H +V K G   ++ V N L+D Y+KCG  + +++VF  M +++ +SW++++  
Sbjct: 1267 KGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAV 1326

Query: 320  LAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
             A +G   EALE+F  M    G     VT   VL AC+H G +  G    K + D+  I 
Sbjct: 1327 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG----KCIHDQV-IK 1381

Query: 379  PKIEHFGC----MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
              +E+  C    ++D+  + G V+ A +    M    N   W  ++    +HG +
Sbjct: 1382 MDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMVAGYGMHGRA 1435


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/631 (38%), Positives = 356/631 (56%), Gaps = 50/631 (7%)

Query: 30  TPASQENPITS---VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAI 86
           +PAS  +P         +   LL  CAS+  +  ++HA ++R  V  +      + +   
Sbjct: 9   SPASTRHPAGGGALTADRAAALLAGCASAS-RAAEIHAAAVRASV--DQDKAVAFRLQRA 65

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTH 144
            + S  +  A  +     DP    + + I  ++       A+ L S+M +S  G+ P  H
Sbjct: 66  YAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAH 125

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY---------------- 188
           T    L A   LA   +G   H  A++       +V  +L+ MY                
Sbjct: 126 TLSASLPACGCLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGM 182

Query: 189 ----------------AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
                           A  G + DA  +F+ +  +DLV WN++++G+  +G+P+EAL LF
Sbjct: 183 RPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLF 242

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG----LSDNVNVNNALLDF 288
           R+M   GVEPD  ++V   SA A+LG    GR  H++V   G    +  N  V  AL+D 
Sbjct: 243 RQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDM 302

Query: 289 YSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           Y KCG +  A  VFR++     R+ V+W+ ++ G A++G  +EALE F ++   G  P +
Sbjct: 303 YYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTD 362

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           +TF+GVL ACSH G+VDEG + F  M++EYGI+PK+EH+GCMVDLLGRAG V++A++ +Q
Sbjct: 363 ITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQ 422

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           +M   P+A +W +LLGAC +H + A+ +     L+     +SG YVLLSN+YA   +W  
Sbjct: 423 SMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWRE 482

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
           V  VR  M    V+K PG S VE+G RV EF  GDRSHP++ EI+A L E+    +  G+
Sbjct: 483 VGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGH 542

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP TE V  D+++  KE AL+ HSEK+A+AF L++T P T +++VKNLR CADCH  +KL
Sbjct: 543 VPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKL 602

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +S+   R+IV RDR+RFHHF DG CSC DYW
Sbjct: 603 VSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 343/574 (59%), Gaps = 5/574 (0%)

Query: 46   ITLLQVCAS-SKHKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            +++L  CA  S  KL K +H F+++  +  ++   G  L+       F  + A   F+ +
Sbjct: 434  MSILPACADLSLLKLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGF-FTAALTTFNRM 491

Query: 104  QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
               +I TWN++I GYA+  +P  A++++ K+ +S I PD  T   ++ A + L D+  G 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 164  QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASN 222
              H + ++ GFES   V+N+L+ MYA  G +  A  +F      +D V WN +I  +  N
Sbjct: 552  CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQN 611

Query: 223  GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
            G   EA++ F +M  E   P+  T VS+  A A L A   G   H  + ++G   N  V 
Sbjct: 612  GHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 671

Query: 283  NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            N+L+D Y+KCG +  ++++F EM  ++ VSW+ ++ G AV+G G  A+ LF  M+     
Sbjct: 672  NSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 343  PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
               V+FV VL AC H G+V+EG   F  M D+Y I P +EH+ CMVDLLGRAGL  +   
Sbjct: 732  IDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 403  YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
            +I+ M + P+A +W  LLG+C +H +  + E+A   L++LEP++   +V+LS++YA   R
Sbjct: 792  FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGR 851

Query: 463  WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
            W +  + R  M    +KKTPG S VEL N+V  F +GD+SHPQ E +H +   + +K++ 
Sbjct: 852  WADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911

Query: 523  EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
             GYVP    V  ++EEE+KE  L  HSE++AI F L+NT PG+ +++VKNLRVCADCH  
Sbjct: 912  IGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTT 971

Query: 583  IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             K ISK+ +R I+VRD +RFHHF+DG CSC DYW
Sbjct: 972  TKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 50  QVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           ++ +S KH   L Q+HA  I  G   ++       +Y   SL      A ++F    +P+
Sbjct: 37  RLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY---SLFHKCDLARSVFDSTPNPS 93

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              WN+MIR Y  S     A+E+Y  M   G++PD +T+ F+LKA +   +++ G   H 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
              R G E  VF+   LV MY+  G +K A +VF+ M +RD+VAWN++I G + +  P E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+  FR M   GVEP   ++++LF    +L  + L R  H YV++   S    V+N L+D
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--AVSNGLID 271

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A+RVF +M  ++ VSW T++ G A NG   E LELF +M++G     +V+
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 348 FVGVLYACSHCGMVDEG 364
            V    A +    +++G
Sbjct: 332 AVSAFLAAAETIDLEKG 348



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 182/363 (50%), Gaps = 2/363 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  +W TM+ GYA +   +  +EL+ KM +  ++ +  +      A ++
Sbjct: 282 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAE 341

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+  G++ H  A++   +S + V   L+ MYA  G  + A ++F  +  RDLVAW+++
Sbjct: 342 TIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAI 401

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I      G P EAL+LF+EM ++ ++P+  T++S+  ACA+L  L LG+  H +  K  +
Sbjct: 402 IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +++   AL+  Y+KCG   AA   F  M  R+ V+W++L+ G A  G    A+++F +
Sbjct: 462 DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           + +    P   T VGV+ AC+    +D+G +    +  + G          ++D+  + G
Sbjct: 522 LRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCG 580

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +  A           + V W  ++ A   +GH+  A I+    ++LE  H      +S 
Sbjct: 581 SLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHPNSVTFVSV 639

Query: 456 LYA 458
           L A
Sbjct: 640 LPA 642



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 141/271 (52%), Gaps = 2/271 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  WN MI G ++S +P  AV+ +  M + G++P + +   L   I K
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L+++ +    H    R  F S V   N L+ +Y+  G V  A +VF+ M ++D V+W ++
Sbjct: 243 LSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+A NG   E L LF +M    V  +  + VS F A AE   L  G+  H    +  +
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V   L+  Y+KCG    A+++F  ++ R+ V+WS ++  L   G+ +EAL LF+E
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           M+     P  VT + +L AC+   ++  G S
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKS 451


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/521 (40%), Positives = 319/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F   +  +  TWN++I GY +S      +E +  M +   KPD+ T+  LL   S+
Sbjct: 376 AQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQ 434

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LAD+  G   H   I+ GFE+ + + NSL+ +YA  G + D  KVF  MS  D+++WN+V
Sbjct: 435 LADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTV 494

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I              +  EM +EG+ PD  T++ +   C+ L     G+  H Y++K G 
Sbjct: 495 IASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGF 554

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV + NAL++ YSKCG +    +VF+ M++++ V+W+ L+    + G GK+AL+ F++
Sbjct: 555 ESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQD 614

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           ME+ G +P  V F+  ++ACSH GMV EG  +F RMK +Y + P++EH+ C+VDLL R+G
Sbjct: 615 MELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSG 674

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ QA E+I +M M P+A +W  LL AC   G++ IA+     +L+L    +G YVL+SN
Sbjct: 675 LLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSN 734

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W  V+ VR +M  + +KK PG S +E+  RV+ F  GD+S  Q +++  +L  
Sbjct: 735 IYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEY 794

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + + +  EGYV   +    D+EE++K D L  HSE++AIAF L+NT PG+P+ V+KNLRV
Sbjct: 795 LVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRV 854

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K I+K+  REI+VRD +RFH FKDG CSC D+W
Sbjct: 855 CGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 235/444 (52%), Gaps = 18/444 (4%)

Query: 20  PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPD 77
           P +  S +++TP   +  + S      +LL+  +S+K+  +L+ VH+  I  G+ L+   
Sbjct: 3   PPKFCSNFNNTPEPSQEFLRS------SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIF 56

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
            GK LI     +  P+S      S     N++ WN++IR    +     A+  Y++M   
Sbjct: 57  SGK-LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREK 115

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            ++PD  T+P ++ + +++ D+ +G   H  A+  GFES +++ N+L+ MY+ F  + +A
Sbjct: 116 KLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNA 175

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             VFE MS RD V+WNS+I+G+ SNG   +AL ++ +    G+ PD +TM S+  AC  L
Sbjct: 176 RYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSL 235

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            A+  G   H  + K+G++ +V + N LL  Y K   +  A+RVF +M  +++V+W+T++
Sbjct: 236 MAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G A  G  + +++LF +M I GFVP  ++    + AC   G +  G    K +    G 
Sbjct: 296 CGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYL---IGS 351

Query: 378 MPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
             + +   C  ++D+  + G +  A E + +     ++V W +L+   T  G+     + 
Sbjct: 352 GFECDTVACNILIDMYAKCGDLLAAQE-VFDTTKCKDSVTWNSLINGYTQSGYYK-EGLE 409

Query: 436 RSTLLQLEPK-HSGDYVLLSNLYA 458
              ++++E K  S  +VLL ++++
Sbjct: 410 SFKMMKMERKPDSVTFVLLLSIFS 433


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/519 (45%), Positives = 318/519 (61%), Gaps = 34/519 (6%)

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           S + VSG  P+ +T+ F+ KA      V  GEQ    AI+ G ES +FV N+++ MYA +
Sbjct: 21  SMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANW 80

Query: 192 GHVKDACKVFEL-------------------------------MSERDLVAWNSVINGFA 220
           G V +A +VF+                                MSERD+V+W ++I G+ 
Sbjct: 81  GLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYV 140

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
             G   EAL LF EM   G  P+ +T+ S  +ACA L AL  GR  H Y+ K  +  N  
Sbjct: 141 QVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNER 200

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           +  +LLD Y+KCG I  A +VF +    K     W+ ++ G A++G  KEA++LF++M++
Sbjct: 201 LLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKV 260

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P +VTFV +L ACSH  +V+EG  YFK M   YGI P+IEH+GCMVDLLGR+GL+K
Sbjct: 261 EKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLK 320

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A E + NM M P+A IW  LLGAC IH      +     + +L+  H G +VLL+NLY+
Sbjct: 321 EAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYS 380

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              +W   + VR+ +     KKTPG S +EL     +F +GDRSHPQT++++  L E+T 
Sbjct: 381 ASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTT 440

Query: 519 KLKLEGYVPRTENVFADI-EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
           KLK  GYVP    V  DI +EE+KE ALS HSEK+AIAF L+NT PGT +R+VKNLRVCA
Sbjct: 441 KLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCA 500

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A K ISKVY REI+VRDR R+HHFKDG CSC+DYW
Sbjct: 501 DCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 12/236 (5%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  +  A  +F  + + ++ +W T+I GY +      A++L+ +M  +G  P+  T    
Sbjct: 111 SGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASA 170

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF--ELMSER 207
           L A + L  +  G   H    ++  +    +  SL+ MYA  G +  A KVF  E   + 
Sbjct: 171 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 230

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR--- 264
            +  WN++I G+A +GK  EA+ LF +M  E V P+  T V+L +AC+    +  GR   
Sbjct: 231 KVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYF 290

Query: 265 --RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR-VFREMRKRNAVSWSTLV 317
              A +Y    G+   +     ++D   + G++  A+  VF      +A  W  L+
Sbjct: 291 KSMASSY----GIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALL 342


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 343/574 (59%), Gaps = 5/574 (0%)

Query: 46   ITLLQVCAS-SKHKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            +++L  CA  S  KL K +H F+++  +  ++   G  L+       F  + A   F+ +
Sbjct: 434  MSILPACADLSLLKLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGF-FTAALTTFNRM 491

Query: 104  QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
               +I TWN++I GYA+  +P  A++++ K+ +S I PD  T   ++ A + L D+  G 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 164  QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASN 222
              H + ++ GFES   V+N+L+ MYA  G +  A  +F      +D V WN +I  +  N
Sbjct: 552  CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQN 611

Query: 223  GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
            G   EA++ F +M  E   P+  T VS+  A A L A   G   H  + ++G   N  V 
Sbjct: 612  GHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 671

Query: 283  NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            N+L+D Y+KCG +  ++++F EM  ++ VSW+ ++ G AV+G G  A+ LF  M+     
Sbjct: 672  NSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 343  PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
               V+FV VL AC H G+V+EG   F  M D+Y I P +EH+ CMVDLLGRAGL  +   
Sbjct: 732  IDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 403  YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
            +I+ M + P+A +W  LLG+C +H +  + E+A   L++LEP++   +V+LS++YA   R
Sbjct: 792  FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGR 851

Query: 463  WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
            W +  + R  M    +KKTPG S VEL N+V  F +GD+SHPQ E +H +   + +K++ 
Sbjct: 852  WADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911

Query: 523  EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
             GYVP    V  ++EEE+KE  L  HSE++AI F L+NT PG+ +++VKNLRVCADCH  
Sbjct: 912  IGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTT 971

Query: 583  IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             K ISK+ +R I+VRD +RFHHF+DG CSC DYW
Sbjct: 972  TKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 50  QVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           ++ +S KH   L Q+HA  I  G   ++       +Y   SL      A ++F    +P+
Sbjct: 37  RLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY---SLFHKCDLARSVFDSTPNPS 93

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              WN+MIR Y  S     A+E+Y  M   G++PD +T+ F+LKA +   +++ G   H 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
              R G E  VF+   LV MY+  G +K A +VF+ M +RD+VAWN++I G + +  P E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+  FR M   GVEP   ++++LF    +L  + L R  H YV++   S    V+N L+D
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSS--AVSNGLID 271

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A+RVF +M  ++ VSW T++ G A NG   E LELF +M++G     +V+
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 348 FVGVLYACSHCGMVDEG 364
            V    A +    +++G
Sbjct: 332 AVSAFLAAAETIDLEKG 348



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 182/363 (50%), Gaps = 2/363 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  +W TM+ GYA +   +  +EL+ KM +  ++ +  +      A ++
Sbjct: 282 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAE 341

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+  G++ H  A++   +S + V   L+ MYA  G  + A ++F  +  RDLVAW+++
Sbjct: 342 TIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAI 401

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I      G P EAL+LF+EM ++ ++P+  T++S+  ACA+L  L LG+  H +  K  +
Sbjct: 402 IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +++   AL+  Y+KCG   AA   F  M  R+ V+W++L+ G A  G    A+++F +
Sbjct: 462 DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           + +    P   T VGV+ AC+    +D+G +    +  + G          ++D+  + G
Sbjct: 522 LRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCG 580

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +  A           + V W  ++ A   +GH+  A I+    ++LE  H      +S 
Sbjct: 581 SLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHPNSVTFVSV 639

Query: 456 LYA 458
           L A
Sbjct: 640 LPA 642



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 141/271 (52%), Gaps = 2/271 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  WN MI G ++S +P  AV+ +  M + G++P + +   L   I K
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L+++ +    H    R  F S V   N L+ +Y+  G V  A +VF+ M ++D V+W ++
Sbjct: 243 LSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+A NG   E L LF +M    V  +  + VS F A AE   L  G+  H    +  +
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V   L+  Y+KCG    A+++F  ++ R+ V+WS ++  L   G+ +EAL LF+E
Sbjct: 361 DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE 420

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           M+     P  VT + +L AC+   ++  G S
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKS 451


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/530 (42%), Positives = 323/530 (60%), Gaps = 9/530 (1%)

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--------HVSGIKPDTHTYP 147
            A  +F  +   N+ +W +MI GY ++     A+ L+             + +  D+    
Sbjct: 2069 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 2128

Query: 148  FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
             +L A S+++   + E  H   ++ GF+  + V N+L+  YA  G    + KVF+ M E+
Sbjct: 2129 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 2188

Query: 208  DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRA 266
            D ++WNS+I  +A +G   EAL +F  M    GV  +  T+ ++  ACA  GAL  G+  
Sbjct: 2189 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 2248

Query: 267  HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
            H  V K+ L  NV V  +++D Y KCG +  A++ F  M+++N  SW+ +V G  ++G  
Sbjct: 2249 HDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRA 2308

Query: 327  KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
            KEAL++F +M   G  P  +TFV VL ACSH G+V+EG+ +F  MK +Y I P IEH+GC
Sbjct: 2309 KEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC 2368

Query: 387  MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
            MVDL GRAG + +AY  I+ M M P+ V+W +LLGAC IH +  + EIA   L +L+P +
Sbjct: 2369 MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDN 2428

Query: 447  SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
             G YVLLSNLYA   RW +V+ +R  M   ++ K PG SLVEL  RV  F +GD+ HP  
Sbjct: 2429 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHH 2488

Query: 507  EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
            E I+  L ++T +L+  GYVP   +V  D++EEEKE  L  HSEK+A+AF ++N+APGT 
Sbjct: 2489 EMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTT 2548

Query: 567  VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            + ++KNLRVC DCH  IKLISK+  R+ VVRD  RFHHFKDG CSC DYW
Sbjct: 2549 INIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 157/419 (37%), Positives = 223/419 (53%), Gaps = 40/419 (9%)

Query: 19  LPCRVKSLYHSTPASQENPITSV----VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN 74
           +PC   S  H    S+  P+T       +K + LLQ C + KH L+Q+HA  IR G+  N
Sbjct: 2   VPCL--SYTHDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKH-LRQIHAKIIRSGLS-N 57

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           +  L + LI+ + S    ++YA  +F  +Q+P  FTWN +IR    +     A+ LY  M
Sbjct: 58  DQLLTRKLIH-LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM 116

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
              GI  D  T+PF++KA +    + +G+  H   I+ GF   VFVQN+L+  Y   GH 
Sbjct: 117 VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 195 KDACKVFELMSERDLVAWNSVI-------------------------------NGFASNG 223
           + A KVFE M  R++V+W +VI                               NG+  N 
Sbjct: 177 RFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQ 236

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +P EAL LF+ M +E + P+ YTMVSL  AC E+G L LGR  H Y  K  +   V +  
Sbjct: 237 QPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGT 296

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D YSKCG I  A  VF  M +++  +W++++  L V+G G+EAL LF EME     P
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKP 356

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             +TF+GVL AC H   V EG +YF RM   YGI P  EH+ CM +L  R+  + +A++
Sbjct: 357 DAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 177/346 (51%), Gaps = 19/346 (5%)

Query: 100  FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
            + +V   N+ +WN++I   A   + + A+  +S +   G+ P   ++P  +K+ S L D+
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
              G  +H  A   GFE+ +FV ++L+ MY+  G +KDA  +F+ +  R++V+W S+I G+
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 2091

Query: 220  ASNGKPNEALTLFREMASEGVEP--------DGYTMVSLFSACAELGALALGRRAHTYVW 271
              N + + AL LF++   E  E         D   MVS+ SAC+ +    +    H +V 
Sbjct: 2092 VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV 2151

Query: 272  KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
            K G   ++ V N L+D Y+KCG  + +++VF  M +++ +SW++++   A +G   EALE
Sbjct: 2152 KKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALE 2211

Query: 332  LFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC---- 386
            +F  M    G     VT   VL AC+H G +  G    K + D+  I   +E+  C    
Sbjct: 2212 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG----KCIHDQV-IKMDLEYNVCVGTS 2266

Query: 387  MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            ++D+  + G V+ A +    M    N   W  ++    +HG +  A
Sbjct: 2267 IIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMVAGYGMHGRAKEA 2311



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 193  HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            H   A   ++ + + ++ +WNSVI   A  G   EAL  F  +   G+ P   +      
Sbjct: 1964 HSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIK 2023

Query: 253  ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
            +C+ L  L  GR +H   +  G   ++ V++AL+D YSKCG +  A+ +F E+  RN VS
Sbjct: 2024 SCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVS 2083

Query: 313  WSTLVVGLAVNGFGKEALELFK-------EMEIGGFVP-GEVTFVGVLYACS 356
            W++++ G   N     AL LFK       E+E G  VP   V  V VL ACS
Sbjct: 2084 WTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/527 (41%), Positives = 332/527 (62%), Gaps = 7/527 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP--DTHTYPFLLKAI 153
           A   F  + DPN      M  GY  +     ++EL+  M  S      D         A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVA 211
           +++ D  +    H++  + GFE    V N+++  YA  G   ++ A KVF+ M ERD+V+
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 212 WNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           WNS+I  +A NG   EA+ L+ +M     G++ +   + ++  ACA  GA+  G+  H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V ++GL +NV V  +++D YSKCG +  A R FR+++++N +SWS ++ G  ++G G+EA
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE+F EM+  G  P  +TF+ VL ACSH G++DEG  ++  MK E+GI   +EH+GCMVD
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG + +AY  I+ M + P+A IW  LL AC IH +  +AE++   L +L+  +SG 
Sbjct: 302 LLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGY 361

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA    W +V+ +R  +   R++K PG+S  EL  +++ F++GD+SHPQ  EI
Sbjct: 362 YVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEI 421

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           ++ L ++ ++++  GYVP T +V  D++EEEKE AL  HSEK+A+AF L+N+ P + + +
Sbjct: 422 YSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHI 481

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLRVC+DCH A+K I+K+  REI++RD  RFHHFKDG CSCRDYW
Sbjct: 482 IKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 343/587 (58%), Gaps = 32/587 (5%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++H  + + G    +P +   LI    +    M  A  +F  +   ++ TWN MI GY++
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMD-ARFLFDKMSHRDVVTWNIMIDGYSQ 194

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +A+    ++LY +M  SG +PD      +L A +   ++  G+  H     NGF     +
Sbjct: 195 NAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHI 254

Query: 181 QNSLVHMYA-------------------------------AFGHVKDACKVFELMSERDL 209
           Q SLV+MYA                                 G V+DA  +F+ M E+DL
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDL 314

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V W+++I+G+A + +P EAL LF EM    + PD  TM+S+ SACA +GAL   +  HTY
Sbjct: 315 VCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTY 374

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             K G    + +NNAL+D Y+KCG ++ A+ VF  M ++N +SWS+++   A++G    A
Sbjct: 375 ADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSA 434

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + LF  M+     P  VTF+GVLYACSH G+V+EG  +F  M +E+ I P+ EH+GCMVD
Sbjct: 435 IALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVD 494

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           L  RA  +++A E I+ M  PPN +IW +L+ AC  HG   + E A + LL+LEP H G 
Sbjct: 495 LYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGA 554

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
            V+LSN+YA E+RW +V  VR+ M  + V K    S +E+ N V  F M DR H Q++EI
Sbjct: 555 LVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEI 614

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L  +  +LKL GY P T  +  D+EEEEK++ + +HSEK+A+ + L+     + +R+
Sbjct: 615 YKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRI 674

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLR+C DCH  +KL+SKV+  EIV+RDR+RFHHF  G CSCRDYW
Sbjct: 675 VKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 220/434 (50%), Gaps = 40/434 (9%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS---FPMSYAHNIFSHVQ 104
           LL  C + +H +KQ+HA  +R  +  +N  L K ++      S     + YA ++FSH+ 
Sbjct: 18  LLASCKTLRH-VKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIP 76

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +P     N ++R ++    P   + LY  +  +G   D  ++P LLKA+SKL+ + +G +
Sbjct: 77  NPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLE 136

Query: 165 THSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
            H +A + GF  +  F+Q++L+ MYAA G + DA  +F+ MS RD+V WN +I+G++ N 
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-------- 275
             +  L L+ EM + G EPD   + ++ SACA  G L+ G+  H ++   G         
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQT 256

Query: 276 -----------------------SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
                                  S ++ V+ A+L  Y+K G++  A+ +F  M +++ V 
Sbjct: 257 SLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVC 316

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           WS ++ G A +    EAL+LF EM+    VP ++T + V+ AC++ G + +   +     
Sbjct: 317 WSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA-KWIHTYA 375

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSA 430
           D+ G    +     ++D+  + G + +A E  +NM    N + W +++ A  +HG   SA
Sbjct: 376 DKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPR-KNVISWSSMINAFAMHGDADSA 434

Query: 431 IAEIARSTLLQLEP 444
           IA   R     +EP
Sbjct: 435 IALFHRMKEQNIEP 448


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 358/622 (57%), Gaps = 25/622 (4%)

Query: 4   WLMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQV---CASSKHKL- 59
           W    K  + + I D P R   +Y     SQ +P       C T L V   C  +  +  
Sbjct: 53  WNAIIKGYTQKNIVDAPIR---MYMDMQISQVHP------NCFTFLYVLKACGGTSVEGI 103

Query: 60  -KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
            KQ+H  + ++G    V + N  +  Y  +        +SYA  +F  + D  + +W ++
Sbjct: 104 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG------QISYARIVFDKLHDRTVVSWTSI 157

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I GY ++ +P+ A+ ++ +M    +KPD      ++ A + + D+  G+  H +  + G 
Sbjct: 158 ISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGL 217

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           E    +  SL  MYA  G V+ A   F  M + +L+ WN++I+G+A+NG   EA+ LFRE
Sbjct: 218 EFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFRE 277

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M ++ +  D  TM S   A A++G+L L R    Y+ K    D+  VN  L+D Y+KCG 
Sbjct: 278 MITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGS 337

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A+ VF  +  ++ V WS +++G  ++G G+EA+ L+ EM+  G  P + TF+G+L A
Sbjct: 338 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTA 397

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C + G+V EG+  F  M D +GI P  +H+ C+VDLLGRAG + QAY++I +M + P   
Sbjct: 398 CKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVS 456

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W  LL AC IH    + EIA   L  L+P ++G YV LSNLYA    W  V  VR  M 
Sbjct: 457 VWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMT 516

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
           ++ + K  GHS +E+   +  F +GDRSHP+++EI   L  + K+LK  GYVP  E+V  
Sbjct: 517 QKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH 576

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D+  EE E+ L +HSE++A+A+ +++TAPGT +R+ KNLR C +CH AIKLISK+  REI
Sbjct: 577 DLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREI 636

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD  RFHHFKDG CSC D+W
Sbjct: 637 IIRDAKRFHHFKDGVCSCGDFW 658



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +Q +   I +G     F+    ++    FG V  A K F  +SE D++ WN++I G+   
Sbjct: 4   DQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQK 63

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              +  + ++ +M    V P+ +T + +  AC       +G++ H   +K G   NV V 
Sbjct: 64  NIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQ 123

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L+  Y+K G I  A+ VF ++  R  VSW++++ G   NG   EAL +FKEM      
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 183

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  +  V V+ A ++   + +G S    +  + G+  + +    +  +  + GLV+ A  
Sbjct: 184 PDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVA-R 241

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHS 429
           +  N +  PN ++W  ++     +G+ 
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYG 268


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 337/556 (60%), Gaps = 5/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+H+ + + G   ++  L  ++  ++ S    +  A  +F   + P+I  +N MI GY  
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFI--SLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +    L++ L+ ++ +SG K  + T   L+     L  +      H  ++++ F S   V
Sbjct: 300 NGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIY---AIHGYSLKSNFLSHTSV 356

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
             +L  +Y+    ++ A K+F+   E+ L +WN++I+G+  NG   +A++LFREM +   
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEF 416

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            P+  T+  + SACA+LGAL+LG+  H  V       ++ V+ AL+  Y+KCG I  A+R
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F  M K+N V+W+T++ G  ++G G+EAL +F EM   G  P  VTF+ VLYACSH G+
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V EG   F  M   YG  P ++H+ C+VD+LGRAG +++A ++I+ M + P   +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC IH  + +A      L +L+P + G +VLLSN+++ ++ +     VR+T  K ++ K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG++L+E+G     F  GD+SHPQ + IH  L ++  K++  GY P TE    D+EEEE
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           +E  +  HSE++AIAF L+ T PGT +R++KNLRVC DCH A KLISK+  R IVVRD +
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDAN 776

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC DYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 203/422 (48%), Gaps = 38/422 (9%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           ++S   L Q HA  + HG   N+  L   L   +  L   + YA +IF  VQ P++F +N
Sbjct: 30  STSISHLAQTHAQIVLHGFR-NDISLLTKLTQRLSDLG-AIYYARDIFLSVQRPDVFLFN 87

Query: 113 TMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            ++RG++ + +P  ++ +++ +  S  +KP++ TY F + A S   D R G   H  AI 
Sbjct: 88  VLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIV 147

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           +G +S + + +++V MY  F  V+DA KVF+ M E+D + WN++I+G+  N    E++ +
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 232 FREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           FR++ +E     D  T++ +  A AEL  L LG + H+   K G   +  V    +  YS
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG I  A  +FRE R+ + V+++ ++ G   NG  + +L LFKE+ + G      T V 
Sbjct: 268 KCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVS 327

Query: 351 VLYACSHCGMVDEGFSYFKR------------MKDEYGIMPKIE---------------H 383
           ++    H  ++     Y  +            +   Y  + +IE                
Sbjct: 328 LVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 384 FGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA----EIAR 436
           +  M+    + GL + A   +  +QN    PN V    +L AC   G  ++     ++ R
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 437 ST 438
           ST
Sbjct: 448 ST 449


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 371/626 (59%), Gaps = 53/626 (8%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS-LS 90
           A   NP+ SV+ KC +L +        L+Q+HA  I+  +  +   + + + +  +S +S
Sbjct: 3   AISTNPVVSVLDKCKSLCE--------LRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVS 54

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-----HVSGIKPDTHT 145
             + YA ++FS +Q PN F +  +I+G+++++NP+ ++ LY++M     + SG++    +
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FS 111

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
            P +LKA  KL     G Q H   ++       FV NS+V MY  FG ++ A +VF+ M 
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171

Query: 206 ERDLVAWNSVINGFASNGK-------------------------------PNEALTLFRE 234
            RD+V+WNS+I G+   G+                               P +AL LFRE
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFRE 231

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW--KVGLSDNVNVNNALLDFYSKC 292
           M S G+ PDG  +VS+ SA A+LG +  G+  H YV   K+ LS    + +AL+D YSKC
Sbjct: 232 MLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGF-IGSALIDMYSKC 290

Query: 293 GIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           G I  A  VFR +  +RN   W++++ GLA++G  +EAL++F EME     P E+TF+G+
Sbjct: 291 GYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGL 350

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L  CSH G+V+EG  YF+ M ++Y I+P+I+H+GCM+DL GRAG ++ A   IQNM    
Sbjct: 351 LSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEA 410

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           + + W+ +L A   HGH  I + A    ++L P  S  YVLLSN+YA   RW +V ++R 
Sbjct: 411 DLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRL 470

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMG-DRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
            M +  VKK  G S + +  +V EF +G +     + ++ A +AE+  +LKL+GY P   
Sbjct: 471 MMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLT 530

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            V  DIE+E KE  L+ HSEK+AIAF L++     P+ +VKNLRVC DCH  +KL+SKVY
Sbjct: 531 QVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVY 590

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+I++RD++RFHHF++G CSC +YW
Sbjct: 591 NRQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/552 (40%), Positives = 332/552 (60%), Gaps = 31/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ TW+ MI GY +S     A+ L+ +M    ++PD      +L A  +
Sbjct: 176 ARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGR 235

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA------------------------- 190
             ++  G+  H   + N       +Q++LV MYA+                         
Sbjct: 236 AGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAM 295

Query: 191 ------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                  G +++A  VF  M ++DLV W+++I+G+A +  P EAL LF EM S G++PD 
Sbjct: 296 VTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQ 355

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            TM+S+ +ACA LGAL   +  H +V K G    + +NNAL++ Y+KCG +  A+R+F +
Sbjct: 356 VTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDK 415

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M ++N +SW+ ++   A++G    AL  F +ME     P  +TFVGVLYACSH G+V+EG
Sbjct: 416 MPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEG 475

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
              F  M +E+ I PK  H+GCMVDL GRA L+++A E ++ M + PN +IW +L+ AC 
Sbjct: 476 RKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACR 535

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           +HG   + E A   LL+L+P H G +V LSN+YA  +RW +V +VR+ M  + + K  G 
Sbjct: 536 VHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGC 595

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S  EL N + EF + DRSH   +EI+  L E+  KLKL GY P T ++  D+EEEEK++ 
Sbjct: 596 SRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEV 655

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           + +HSEK+A+ + L+    G+ +R++KNLRVC DCH  IKL SKVY REIVVRDR+RFHH
Sbjct: 656 VLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHH 715

Query: 605 FKDGHCSCRDYW 616
           +KDG CSC+DYW
Sbjct: 716 YKDGVCSCKDYW 727



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 206/411 (50%), Gaps = 34/411 (8%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           A+S   LKQVHA  +R  +  +   L K L+ +  +LS  + YA ++F+ +  P     N
Sbjct: 33  ATSLTHLKQVHAQILRSKLDRSTSLLVK-LVISSCALSSSLDYALSVFNLIPKPETHLCN 91

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
             +R  + S  P   + +Y +M   G+  D  ++P LLKA+S++  +  G + H +A + 
Sbjct: 92  RFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKL 151

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GF+S  FVQ  LV MYAA G + +A  +F+ M  RD+V W+ +I+G+  +G  N+AL LF
Sbjct: 152 GFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLF 211

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            EM +  VEPD   + ++ SAC   G L+ G+  H ++ +  +  + ++ +AL+  Y+ C
Sbjct: 212 EEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASC 271

Query: 293 GI-------------------------------IIAAQRVFREMRKRNAVSWSTLVVGLA 321
           G                                I  A+ VF +M K++ V WS ++ G A
Sbjct: 272 GSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYA 331

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +   +EAL LF EM+  G  P +VT + V+ AC+H G +D+   +     D+ G    +
Sbjct: 332 ESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGAL 390

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
                ++++  + G +++A      M    N + W  ++ A  +HG +  A
Sbjct: 391 PINNALIEMYAKCGSLERARRIFDKM-PRKNVISWTCMISAFAMHGDAGSA 440



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 16/308 (5%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD-ACKVFE 202
           H++  L  A+S    +   +Q H+  +R+  +    +   LV    A     D A  VF 
Sbjct: 21  HSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFN 80

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
           L+ + +    N  +   + + +P + L ++  M ++G+  D ++   L  A + + +L  
Sbjct: 81  LIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE 140

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G   H    K+G   +  V   L+  Y+ CG I  A+ +F +M  R+ V+WS ++ G   
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---EYGIMP 379
           +G   +AL LF+EM+     P E+    VL AC   G      SY K + D   E  I+ 
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAG----NLSYGKMIHDFIMENNIVV 256

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI--ARS 437
                  +V +    G +  A    + M  P N V          + G+S + +I  ARS
Sbjct: 257 DPHLQSALVTMYASCGSMDLALNLFEKM-TPKNLVA-----STAMVTGYSKLGQIENARS 310

Query: 438 TLLQLEPK 445
              Q+  K
Sbjct: 311 VFNQMVKK 318


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/524 (41%), Positives = 325/524 (62%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +   W+TM+ G+  +  P+ A+ +YS+M   G+  D      +++A
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   + RMG   H   +R+G    V +  SLV MYA  GH   A +VF +M  R+ V+W
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSW 281

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I+GFA NG  +EAL LFREM++ G++PD   +VS   ACA++G L LG+  H ++ +
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR 341

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L     +  A+LD YSKCG + +A+++F ++  R+ V W+ ++     +G G +AL L
Sbjct: 342 R-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALAL 400

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+E+   G  P   TF  +L A SH G+V+EG  +F RM  E+GI P  +H  C+VDLL 
Sbjct: 401 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLA 460

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A E + +M   P   IW  LL  C  +    + E     +L+ +P+  G   L
Sbjct: 461 RSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLAL 520

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  ++W  V+E+R+ M     KK PG+SL+E+      F M D+SHPQ +EI  M
Sbjct: 521 VSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKM 580

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           +++++ +++  GYVPRTE V+ D++E+ KE  LSYHSE++AIAF L+NT+PGT + ++KN
Sbjct: 581 ISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKN 640

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  REIVVRD  RFHHFKDG CSC DYW
Sbjct: 641 LRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 179/356 (50%), Gaps = 16/356 (4%)

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           I  WN ++   + + +P  A+ ++  +  S  +PD+ T+   L A ++L D+   E    
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVFRALP-SSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
            A   G+   VFV ++L+H+Y+  G + DA +VF+ M  +D VAW++++ GF S G+P E
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL ++  M   GV  D   MV +  AC   G   +G   H    + G+  +V +  +L+D
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVD 255

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+K G    A++VFR M  RNAVSW+ L+ G A NG   EAL+LF+EM   G  P    
Sbjct: 256 MYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGA 315

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-----VDLLGRAGLVKQAYE 402
            V  L AC+  G       + K  K  +G + +   F C+     +D+  + G ++ A +
Sbjct: 316 LVSALLACADVG-------FLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLESARK 368

Query: 403 YIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
              N L   + V+W  ++  C  H  GH A+A         ++P H+    LLS L
Sbjct: 369 LF-NKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 423


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/459 (46%), Positives = 304/459 (66%), Gaps = 1/459 (0%)

Query: 159 VRMGEQTHSVAIRNGFESLVFVQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           V  GE   +  + +G      V  N+++H YA  G V  A ++F+   +RD  +W+S+I+
Sbjct: 127 VARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMIS 186

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            +A      EAL L+REM   GV PD  +MVS+ SAC+ +GALA+G   H +V    +  
Sbjct: 187 AYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEV 246

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           ++ +  AL+D Y+KCG I  + +VF  M  ++ ++WS++++GLA +G G +AL LF EM 
Sbjct: 247 DMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMI 306

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P E+TF+GVL AC+H G+V++G  YF  M D +G++P++EH+GCMVDLLGRAG V
Sbjct: 307 SQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHV 366

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           ++A E I++M   P+ +IWRTLLGAC IH +  IAE A + L  L+P   G YVLLSN+Y
Sbjct: 367 EEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIY 426

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A    W  V E+R+T+ +E +++ PG S +E  N V EF  GDRSHP+ EEI+ ML E+ 
Sbjct: 427 AQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMM 486

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            +L+  GY P T  V  DI+E+ K+ AL+ HSEK+AIAF L+ T   + +R+ KNLR C 
Sbjct: 487 DRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACE 546

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH AIKLIS  Y R+++VRDR+RFHHF +G CSC+DYW
Sbjct: 547 DCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF   +D + F+W++MI  YA+      A+EL+ +M V+G+ PD  +   +L A S 
Sbjct: 166 AREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSA 225

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  + +G + H     N  E  + +  +LV MYA  G ++++ KVF  M  +D++ W+S+
Sbjct: 226 MGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSM 285

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I G A++G  ++AL+LF EM S+G++P+  T + +  AC  +G +  G++  + +  V G
Sbjct: 286 IIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHG 345

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
           +   +     ++D   + G +  A  + R M  K + + W TL+
Sbjct: 346 VVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLL 389


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 348/578 (60%), Gaps = 11/578 (1%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNN---PDL-GKYLIYAIVSLSFPMSYAHNIF 100
           C TLL+ C      L +++   I H + LN+    DL  +  +  + +    + YA  +F
Sbjct: 18  CHTLLKRCT----HLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLF 73

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA--D 158
             +   ++ TW  +I GY++   P  A+ L  +M   G+KP+  T   LLKA S +   D
Sbjct: 74  DEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTD 133

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           V  G Q H + +R G++S V+V  +++ MYA   H+++A  +F++M  ++ V+WN++I G
Sbjct: 134 VLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAG 193

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A  G+ ++A  LF  M  E V+P  +T  S+  ACA +G+L  G+  H  + K G    
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV 253

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             V N LLD Y+K G I  A++VF  + KR+ VSW++++ G + +G GK AL+ F+EM  
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P ++TF+ VL ACSH G++DEG  YF  MK +Y + P+I H+  MVDLLGRAG + 
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRAGHLD 372

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A ++I  M + P A +W  LLGAC +H +  +   A   + +L+  + G +VLL N+YA
Sbjct: 373 RAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYA 432

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              RW +  +VR+ M +  VKK P  S VE+ N V  F   D +HPQ  EIH M  +I+ 
Sbjct: 433 LAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISD 492

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K  GYVP + +V   ++++E+E  L YHSEK+A+AF L+NT PG+ +R+ KN+R+C D
Sbjct: 493 KIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGD 552

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K +SK+  REI+VRD +RFHHF DG CSC DYW
Sbjct: 553 CHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 358/578 (61%), Gaps = 6/578 (1%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAHNIFS 101
           R  + +LQ C S K KL+++H+  I +G+  ++P +  +L+ +  VS++  +S+A  +F 
Sbjct: 6   RVIVRMLQGCNSMK-KLRKIHSHVIINGLQ-HHPSIFNHLLRFCAVSVTGSLSHAQLLFD 63

Query: 102 HVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLADV 159
           H   DP+   WN +IRG++ S++PL ++  Y++M +S + +PD  T+ F LK+  ++  +
Sbjct: 64  HFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSI 123

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
               + H   IR+GF     V  SLV  Y+A G V+ A KVF+ M  RDLV+WN +I  F
Sbjct: 124 PKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCF 183

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           +  G  N+AL++++ M +EGV  D YT+V+L S+CA + AL +G   H     +     V
Sbjct: 184 SHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCV 243

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V+NAL+D Y+KCG +  A  VF  MRKR+ ++W+++++G  V+G G EA+  F++M   
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVAS 303

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +TF+G+L  CSH G+V EG  +F+ M  ++ + P ++H+GCMVDL GRAG ++ 
Sbjct: 304 GVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLEN 363

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           + E I       + V+WRTLLG+C IH +  + E+A   L+QLE  ++GDYVL++++Y+ 
Sbjct: 364 SLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSA 423

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
                    +R+ +    ++  PG S +E+G++V +F + D+ HP++  I++ L E+  +
Sbjct: 424 ANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINR 483

Query: 520 LKLEGYVPRTENVFA-DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
             L GY P   N  A  + +     A + HSEK+AIA+ L+ T  GT +R+ KNLRVC D
Sbjct: 484 AILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRD 543

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK ++REI+VRDR RFHHF DG CSC DYW
Sbjct: 544 CHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/524 (41%), Positives = 322/524 (61%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A   +  +   +I  WN +I GY++  + L AV L+SKM    I  +  T   +LK+
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++ L  +++ +Q H+++I++G  S  +V NSL+  Y    H+ +A K+FE  +  DLVA+
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S+I  ++  G   EAL L+ +M    ++PD +   SL +ACA L A   G++ H +  K
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   ++  +N+L++ Y+KCG I  A R F E+  R  VSWS ++ G A +G GKEAL L
Sbjct: 515 FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F +M   G  P  +T V VL AC+H G+V+EG  YF++M+  +GI P  EH+ CM+DLLG
Sbjct: 575 FNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLG 634

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+G + +A E + ++    +  +W  LLGA  IH +  + + A   L  LEP+ SG +VL
Sbjct: 635 RSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVL 694

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L+N+YA    W NV +VR+ M   +VKK PG S +E+ ++V+ F +GDRSH +++EI+A 
Sbjct: 695 LANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAK 754

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++   L   GY    E    ++++ EKE  L +HSEK+A+AF L+ T PG P+RV KN
Sbjct: 755 LDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKN 814

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH   K + K+ SREI+VRD +RFHHFKDG CSC DYW
Sbjct: 815 LRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 2/304 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++HA  I+ G    +P L  +L+  + S      YA  +     + ++ +W++++ GY +
Sbjct: 2   ELHAHLIKFGFS-RDPSLRNHLV-TLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +     A+ ++++M + G+K +  T+P +LKA S   D+ MG + H +A+  GFES  FV
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+LV MYA  G + D+ ++F  + ER++V+WN++ + +  +    EA+ LF+EM   G+
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            P+ +++  + +ACA L    LGR+ H  + K+GL  +    NAL+D YSK G I  A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF+++   + VSW+ ++ G  ++     AL L  EM+  G  P   T    L AC+  G 
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 361 VDEG 364
            + G
Sbjct: 300 KELG 303



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 188/373 (50%), Gaps = 12/373 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +++H   ++ G+     DL ++   A+V +   +  +  A  +F  +  P++ +WN +I 
Sbjct: 203 RKIHGLMLKMGL-----DLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIA 257

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G        LA+ L  +M  SG +P+  T    LKA + +    +G Q HS  I+    S
Sbjct: 258 GCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHS 317

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            +F    LV MY+    + DA + ++ M ++D++AWN++I+G++  G   +A++LF +M 
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMF 377

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           SE ++ +  T+ ++  + A L A+ + ++ HT   K G+  +  V N+LLD Y KC  I 
Sbjct: 378 SEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHID 437

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A ++F E    + V++++++   +  G G+EAL+L+ +M+     P       +L AC+
Sbjct: 438 EASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI- 415
           +    ++G         ++G M  I     +V++  + G ++ A        +P   ++ 
Sbjct: 498 NLSAYEQG-KQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSE--IPNRGIVS 554

Query: 416 WRTLLGACTIHGH 428
           W  ++G    HGH
Sbjct: 555 WSAMIGGYAQHGH 567



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 131/241 (54%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +F  + + N+ +WN +   Y +S     AV L+ +M  SGI P+  +   +L A + 
Sbjct: 136 SRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAG 195

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L +  +G + H + ++ G +   F  N+LV MY+  G ++ A  VF+ ++  D+V+WN++
Sbjct: 196 LQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAI 255

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G   +   + AL L  EM   G  P+ +T+ S   ACA +G   LGR+ H+ + K+  
Sbjct: 256 IAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDA 315

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++     L+D YSKC ++  A+R +  M K++ ++W+ L+ G +  G   +A+ LF +
Sbjct: 316 HSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSK 375

Query: 336 M 336
           M
Sbjct: 376 M 376



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 14/275 (5%)

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H+  I+ GF     ++N LV +Y+       A K+ +  SE D+V+W+S+++G+  NG
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EAL +F EM   GV+ + +T  S+  AC+    L +GR+ H      G   +  V N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            L+  Y+KCG++  ++R+F  + +RN VSW+ L      +    EA+ LFKEM   G +P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGC--MVDLLGRAGLV 397
            E +   +L AC+     D G       +  +G+M K    ++ F    +VD+  +AG +
Sbjct: 182 NEFSISIILNACAGLQEGDLG-------RKIHGLMLKMGLDLDQFSANALVDMYSKAGEI 234

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           + A    Q+ +  P+ V W  ++  C +H  + +A
Sbjct: 235 EGAVAVFQD-IAHPDVVSWNAIIAGCVLHDCNDLA 268


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 358/622 (57%), Gaps = 25/622 (4%)

Query: 4   WLMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQV---CASSKHKL- 59
           W    K  + + I D P R   +Y     SQ +P       C T L V   C  +  +  
Sbjct: 68  WNAIIKGYTQKNIVDAPIR---MYMDMQISQVHP------NCFTFLYVLKACGGTSVEGI 118

Query: 60  -KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
            KQ+H  + ++G    V + N  +  Y  +        +SYA  +F  + D  + +W ++
Sbjct: 119 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG------QISYARIVFDKLHDRTVVSWTSI 172

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I GY ++ +P+ A+ ++ +M    +KPD      ++ A + + D+  G+  H +  + G 
Sbjct: 173 ISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGL 232

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           E    +  SL  MYA  G V+ A   F  M + +L+ WN++I+G+A+NG   EA+ LFRE
Sbjct: 233 EFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFRE 292

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M ++ +  D  TM S   A A++G+L L R    Y+ K    D+  VN  L+D Y+KCG 
Sbjct: 293 MITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGS 352

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A+ VF  +  ++ V WS +++G  ++G G+EA+ L+ EM+  G  P + TF+G+L A
Sbjct: 353 IYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTA 412

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C + G+V EG+  F  M D +GI P  +H+ C+VDLLGRAG + QAY++I +M + P   
Sbjct: 413 CKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVS 471

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W  LL AC IH    + EIA   L  L+P ++G YV LSNLYA    W  V  VR  M 
Sbjct: 472 VWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMT 531

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
           ++ + K  GHS +E+   +  F +GDRSHP+++EI   L  + K+LK  GYVP  E+V  
Sbjct: 532 QKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH 591

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D+  EE E+ L +HSE++A+A+ +++TAPGT +R+ KNLR C +CH AIKLISK+  REI
Sbjct: 592 DLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREI 651

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD  RFHHFKDG CSC D+W
Sbjct: 652 IIRDAKRFHHFKDGVCSCGDFW 673



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +Q +   I +G     F+    ++    FG V  A K F  +SE D++ WN++I G+   
Sbjct: 19  DQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQK 78

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              +  + ++ +M    V P+ +T + +  AC       +G++ H   +K G   NV V 
Sbjct: 79  NIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQ 138

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L+  Y+K G I  A+ VF ++  R  VSW++++ G   NG   EAL +FKEM      
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 198

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  +  V V+ A ++   + +G S    +  + G+  + +    +  +  + GLV+ A  
Sbjct: 199 PDWIALVSVMTAYTNVEDLGQGKS-IHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVA-R 256

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHS 429
           +  N +  PN ++W  ++     +G+ 
Sbjct: 257 FFFNRMEKPNLILWNAMISGYANNGYG 283


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 343/556 (61%), Gaps = 3/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           + HAF+IR G+     ++   ++ A       +  A  +F  +   N  +WN MI GYA+
Sbjct: 182 EAHAFAIRSGLE-ELVNVATAILDAYCKCG-DIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           + +   A+ L+++M   G+     +    L+A  +L  +  G + H + +R G +S V V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+L+ MY+    V  A  VF+ +  R  V+WN++I G A NG   +A+ LF  M  E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD +T+VS+  A A++      R  H Y  ++ L  +V V  AL+D Y+KCG +  A+ 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F   R+R+ ++W+ ++ G   +GFGK A+ELF+EM+  G VP E TF+ VL ACSH G+
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEG  YF  MK++YG+ P +EH+G MVDLLGRAG + +A+ +IQ M M P   ++  +L
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAML 539

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC +H +  +AE +   + +L P+    +VLL+N+YA    W +V  VR  M K  ++K
Sbjct: 540 GACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQK 599

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
           TPG S+++L N +  F+ G  +H Q +EI++ LA++ +++K  GYVP T+++  D+E++ 
Sbjct: 600 TPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH-DVEDDV 658

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           K   L+ HSEK+AIAF L+ TAPGT +++ KNLRVC DCH A KLIS V  REI++RD  
Sbjct: 659 KAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQ 718

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC DYW
Sbjct: 719 RFHHFKDGKCSCGDYW 734


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/567 (41%), Positives = 329/567 (58%), Gaps = 14/567 (2%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA-----HNIFSHVQDPNIFTWN 112
           +  Q+HA  +R G+   +P        ++ + S P   A     H++ +    P+ F  N
Sbjct: 35  RFLQLHAHLLRTGLLALSPVTTTAAFLSLAAASLPSHRALAVLDHHLTAASSLPSTFQCN 94

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           +++R  ++   P  A+    +M   G + +  T   LLK    LA  R   Q H+  +  
Sbjct: 95  SILRVLSD---PSDALRFLRRMRALGRRGNAFTLAILLKPRCALAHAR---QLHANVVAE 148

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G      +  SL+  YA  G    A K+F  M  RD VAWN +I+  A N +  +AL LF
Sbjct: 149 GHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLF 208

Query: 233 REMASE--GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
            EM     G EPD  T + L  AC  LGAL  G +   Y  + G    + V N+L+  YS
Sbjct: 209 EEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYS 268

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  A RVF    +++ V+WS ++ GLA NGFG +A+  F+EM      P E TF G
Sbjct: 269 RCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTG 328

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN-MLM 409
           VL ACSH G+VDEGF +F  M+ EYG+ P + H+GC+VDL+GRAGL+ +AYE + N M +
Sbjct: 329 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKV 388

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+A IWRTLLGAC IHGH  + E   S L++L+ + +GDYVLL N YA    W  V EV
Sbjct: 389 APDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEV 448

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R+ M ++ ++ TPG + VE    V+EF   D +HP+  EI+  L EI K+L++ GYVP  
Sbjct: 449 RKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNV 508

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
            +   D++ E KE AL+YHSEK+AIAF L+ T    P+R+ KNLRVC DCH   K+ S +
Sbjct: 509 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGI 568

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           Y+R ++VRDR+RFHHF+ G CSC DYW
Sbjct: 569 YNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/544 (40%), Positives = 325/544 (59%), Gaps = 31/544 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ TW+ +I  + ++     A+  +  MH  G+  D       L A + 
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH---------------------- 193
           L  V MG+  HS++++ G ES + +QN+L++MY+  G                       
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 448

Query: 194 ---------VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                    V +A  +F+ M E+D+V+W+S+I+G+A N   +E L LF+EM   G +PD 
Sbjct: 449 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 508

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T+VS+ SACA L AL  G+  H Y+ + GL+ NV +   L+D Y KCG +  A  VF  
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M ++   +W+ L++GLA+NG  + +L++F  M+     P E+TF+GVL AC H G+VDEG
Sbjct: 569 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             +F  M  ++ I P ++H+GCMVDLLGRAG +++A E +  M M P+   W  LLGAC 
Sbjct: 629 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK 688

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            HG S +       L++L+P H G +VLLSN+YA + +W +V E+R  M K RV K PG 
Sbjct: 689 KHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 748

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S++E    + EF  GD++HP  + I  ML E+  KLKLEGY P    V  D++EEEKE  
Sbjct: 749 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKEST 808

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L  HSEK+AIAF L+N +P TP+R++KNLR+C DCH A KLISK + R+IVVRDR RFHH
Sbjct: 809 LFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHH 868

Query: 605 FKDG 608
           F+ G
Sbjct: 869 FEQG 872



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 74/384 (19%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D +++  NT+I  ++  +N   A  ++++  V     D+ ++  +L    ++ +V   + 
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVL----DSVSWNSILAGYIEIGNVEEAKH 300

Query: 165 T-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H +  R+     +   NS++ ++   G V +ACK+F+ M E+D+V W+++I  F  N 
Sbjct: 301 IYHQMPERS-----IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNE 355

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA+  F  M   GV  D    VS  SACA L  + +G+  H+   K+G    +N+ N
Sbjct: 356 MYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQN 415

Query: 284 ALLDFYSKCGIIIAAQRVFRE-------------------------------MRKRNAVS 312
           AL+  YSKCG I+ A+++F E                               M +++ VS
Sbjct: 416 ALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVS 475

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
           WS+++ G A N    E L LF+EM++ GF P E T V V+ AC+    +++G    +Y K
Sbjct: 476 WSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIK 535

Query: 370 R--------------------------MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYE 402
           R                          ++  YG++ K I  +  ++  L   GLV+ + +
Sbjct: 536 RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLD 595

Query: 403 YIQNML---MPPNAVIWRTLLGAC 423
              NM    + PN + +  +LGAC
Sbjct: 596 MFSNMKKCHVTPNEITFMGVLGAC 619



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 39/249 (15%)

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           R Y ++ +P  A  LY  M  + +  D +TYP L++A S        +Q H+  ++ GF+
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S V+V+N+L++ ++   ++ DAC+VF   S  D V+WNS++ G+   G   EA  ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
                                                     ++  +N+++  +   G++
Sbjct: 306 PER---------------------------------------SIIASNSMIVLFGMRGLV 326

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + A ++F EM +++ V+WS L+     N   +EA+  F  M   G +  EV  V  L AC
Sbjct: 327 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 386

Query: 356 SHCGMVDEG 364
           ++  +V+ G
Sbjct: 387 ANLLVVNMG 395


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/594 (39%), Positives = 368/594 (61%), Gaps = 9/594 (1%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLI 83
            YH    + + P    V   I+++   A S + L   Q+HA+++++G+  ++  +G  L+
Sbjct: 406 FYHEMRDAGQKPDLVAV---ISIIAASARSGNTLNGMQIHAYAMKNGLD-SDLQVGNSLV 461

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
                    M Y   IF  + D ++ +W T+I G+A++ +   A+EL+ ++ + GI  D 
Sbjct: 462 DMYAKFC-SMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDV 520

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
                +L A S L  +   ++ HS  IR G   LV +QN +V +Y   G+V  A ++FEL
Sbjct: 521 MMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV-LQNGIVDVYGECGNVDYAARMFEL 579

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +  +D+V+W S+I+ +  NG  NEAL LF  M   GVEPD  ++VS+ SA A L AL  G
Sbjct: 580 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 639

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H ++ + G     ++ + L+D Y++CG +  ++ VF  +R ++ V W++++    ++
Sbjct: 640 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 699

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G G+ A++LF+ ME     P  + FV VLYACSH G+++EG  + + MK EY + P  EH
Sbjct: 700 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEH 759

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           + C+VDLLGRA  +++AY++++ M + P A +W  LLGAC IH +  + EIA   LL+++
Sbjct: 760 YVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMD 819

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P++ G+YVL+SN+YA E+RW +V+EVR  M    +KK PG S +E+GN+V  F   D+SH
Sbjct: 820 PENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSH 879

Query: 504 PQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           PQ+ EI++ L++IT+KL  E GYV +T+ V  + +EEEK   L  HSE++AIA+ ++ T 
Sbjct: 880 PQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTP 939

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            G  +R+ KNLRVC DCH   KLISK + RE+V+RD +RFHHFK G CSC D W
Sbjct: 940 EGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 204/400 (51%), Gaps = 9/400 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L++C S K   + +QVHA  I      N+  L   L++        +  A  +F  + 
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVD-AEKLFDGMP 177

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
              IFTWN MI  Y  +  PL ++ELY +M VSGI  D  T+P +LKA   L D R G +
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFASNG 223
            H +AI+ G+ S+VFV NS+V MY     +  A ++F+ M E+ D+V+WNS+I+ ++SNG
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  EAL LF EM    + P+ YT V+   AC +   +  G   H  V K     NV V N
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 357

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y++ G +  A  +F  M   + +SW++++ G   NG   EAL+ + EM   G  P
Sbjct: 358 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 417

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             V  + ++ A +  G    G   +   MK+  G+   ++    +VD+  +   +K   +
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYM-D 474

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG-HSAIAEIARSTLLQ 441
            I + +   + V W T++     +G HS   E+ R   L+
Sbjct: 475 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLE 514



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 205/400 (51%), Gaps = 25/400 (6%)

Query: 37  PITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLS 90
           P+ +    CI  L+ C   K +    +VH  +I+ G    V + N  +G Y      +  
Sbjct: 213 PLDACTFPCI--LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMY------TKC 264

Query: 91  FPMSYAHNIFSHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
             ++ A  +F  + +  ++ +WN+MI  Y+ +   + A+ L+ +M  + + P+T+T+   
Sbjct: 265 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAA 324

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L+A    + ++ G   H+  +++ +   VFV N+L+ MYA FG + +A  +F  M + D 
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 384

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++WNS+++GF  NG  +EAL  + EM   G +PD   ++S+ +A A  G    G + H Y
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAY 444

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             K GL  ++ V N+L+D Y+K   +     +F +M  ++ VSW+T++ G A NG    A
Sbjct: 445 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 504

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGM---VDEGFSYFKRMKDEYGIMPKIEHFGC 386
           LELF+E+++ G     +    +L ACS   +   V E  SY  R     G+   +   G 
Sbjct: 505 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK----GLSDLVLQNG- 559

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +VD+ G  G V  A    + ++   + V W +++ +C +H
Sbjct: 560 IVDVYGECGNVDYAARMFE-LIEFKDVVSWTSMI-SCYVH 597


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 356/607 (58%), Gaps = 8/607 (1%)

Query: 12  SYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVC--ASSKHKLKQVHAFSIRH 69
           +Y +ISDL  +   L+    A+   P       C  LL+ C  A   +  +Q+H  SI+ 
Sbjct: 319 AYGQISDLA-KSFDLFCQMVAAGVRP-NEFTYPC--LLRTCTYAGEINLGEQIHLLSIKT 374

Query: 70  GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           G   +    G  ++  + S    +  A  I   ++  ++ +W +MI GY +      A+E
Sbjct: 375 GFESDMYVSG--VLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
            +  M + GI PD       + A + +  +R G+Q HS    +G+ + V + N+LV++YA
Sbjct: 433 TFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYA 492

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
             G  K+A  +FE +  +D + WN +++GFA +G   EAL +F +M   GV+ + +T VS
Sbjct: 493 RCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVS 552

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
             SA A L  +  G++ H  V K G +    V NAL+  Y KCG I  A+  F EM +RN
Sbjct: 553 SISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERN 612

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            VSW+T++   + +G+G EAL+LF +M+  G  P +VTF+GVL ACSH G+V+EG  YFK
Sbjct: 613 HVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFK 672

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  E+GI P+ +H+ C+VD+LGRAG + +A ++++ M +  NA++WRTLL AC +H + 
Sbjct: 673 SMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNI 732

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            I E+A   LL+LEP  S  YVLLSN YA   +W     VR+ M    V+K PG S +E+
Sbjct: 733 EIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEV 792

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
            N V  FF+GDR HP   +I+  LA++  +L   GY+     +F + E+E+K+     HS
Sbjct: 793 KNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHS 852

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+AF L++  P  P+RV+KNLRVC DCH  +K  S+V  REIV+RD  RFHHF +G+
Sbjct: 853 EKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGN 912

Query: 610 CSCRDYW 616
           CSC D+W
Sbjct: 913 CSCGDFW 919



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 215/403 (53%), Gaps = 17/403 (4%)

Query: 34  QENPITSVVRKCIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIY-AIV 87
           +E  ++     C+T   LL  CAS    +K KQ+H++ ++ G+   +PD   Y+I  +++
Sbjct: 233 EEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGM---SPD---YIIEGSLL 286

Query: 88  SLSFPMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
            L         A  IF      N+  WN M+  Y + ++   + +L+ +M  +G++P+  
Sbjct: 287 DLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEF 346

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYP LL+  +   ++ +GEQ H ++I+ GFES ++V   L+ MY+ +G +  A ++ E++
Sbjct: 347 TYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVL 406

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
             +D+V+W S+I G+  +    EAL  F++M   G+ PD   + S  SACA + A+  G+
Sbjct: 407 EAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQ 466

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           + H+ V+  G S +V++ NAL++ Y++CG    A  +F  +  ++ ++W+ +V G A +G
Sbjct: 467 QIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSG 526

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
             +EALE+F +M   G      TFV  + A ++   + +G      +  + G   + E  
Sbjct: 527 LYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI-KTGCTSETEVA 585

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             ++ L G+ G ++ A      M    N V W T++ +C+ HG
Sbjct: 586 NALISLYGKCGSIEDAKMQFFEM-SERNHVSWNTIITSCSQHG 627



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 194/412 (47%), Gaps = 15/412 (3%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQV---CA------SSKH--KLKQVHAFSIRHGVPLN 74
           L H  P    +   + VR+C  L  V   CA      S KH   +  +HA +I  G  L 
Sbjct: 17  LAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCG--LG 74

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
              +   L+  + +    +  A  +F  +   +  +W  M+ GYA +     AV LY +M
Sbjct: 75  EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM 134

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           H SG+ P  +    +L A +K A    G   H+   + G  S   V N+L+ +Y  FG +
Sbjct: 135 HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSL 194

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A +VF  M   D V +N++I+  A  G    AL +F EM   G  PD  T+ SL +AC
Sbjct: 195 SLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC 254

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A +G L  G++ H+Y+ K G+S +  +  +LLD Y KCG+I+ A  +F+   + N V W+
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWN 314

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++V         ++ +LF +M   G  P E T+  +L  C++ G ++ G      +  +
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG-EQIHLLSIK 373

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            G    +   G ++D+  + G + +A   ++ +L   + V W +++     H
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLDKARRILE-VLEAKDVVSWTSMIAGYVQH 424



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 184/386 (47%), Gaps = 16/386 (4%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHG----VPLNNPDLG 79
           LYH    S   P   V+    ++L  C  +    + + VHA   + G      + N  + 
Sbjct: 130 LYHQMHCSGVVPTPYVLS---SVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIA 186

Query: 80  KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
            YL +  +SL      A  +FS +   +  T+NT+I  +A+  N   A+E++ +M +SG 
Sbjct: 187 LYLRFGSLSL------AERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
            PD  T   LL A + + D+  G+Q HS  ++ G      ++ SL+ +Y   G + +A +
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           +F+     ++V WN ++  +       ++  LF +M + GV P+ +T   L   C   G 
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           + LG + H    K G   ++ V+  L+D YSK G +  A+R+   +  ++ VSW++++ G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
              + F KEALE FK+M++ G  P  +     + AC+    + +G     R+    G   
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-GYSA 479

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            +  +  +V+L  R G  K+A+   +
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFE 505



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL-GALA- 261
           M+ R   + N  + GF ++  P + L+LF   A++  +  G   V    A  E  G++  
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLF---AAKVRQCRGLGSVDFACALRECRGSVKH 57

Query: 262 --LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
             L    H      GL ++    N L+D Y+K G++  A+RVF ++  R+ VSW  ++ G
Sbjct: 58  WPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSG 117

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            A NG G+EA+ L+ +M   G VP       VL AC+   + ++G
Sbjct: 118 YARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG 162


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/521 (43%), Positives = 320/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W  MI G  E      AV+L+  +  SG++PD      +L+A ++
Sbjct: 158 AWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACAR 217

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+  G          G    VFV  SLV MY   G +++A  VF+ M E+D+V W+++
Sbjct: 218 LGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAM 277

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+ASNG P EA+ LF EM    V PD Y MV   S+CA LGAL LG  A   +     
Sbjct: 278 IQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEF 337

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N  +  +L+DFY+KCG +  A  V++ M++++ V ++ ++ GLA+ G    A  +F +
Sbjct: 338 LSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQ 397

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P E TFVG+L  C+H G+VD+G  YF  M  ++ + P IEH+GCMVDLL RAG
Sbjct: 398 MGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAG 457

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A+  I+ M M  N ++W +LLG C +H  + +AE     L++LEP +SG YVLLSN
Sbjct: 458 FLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSN 517

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+  +RW   +++R T+ ++ ++K PG+S VE+   V EF +GD SHP +++I+  L  
Sbjct: 518 IYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLES 577

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + K LK  GY P TE V  D+EEEEKE  L  HSEK+A+AF L++T     +RVVKNLRV
Sbjct: 578 LFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRV 637

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK ISKV  REIV+RD +RFH F DG CSCRDYW
Sbjct: 638 CGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 129/267 (48%), Gaps = 3/267 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + + +I  W+ MI+GYA +  P  A+EL+ +M    ++PD +     L +
Sbjct: 256 MEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSS 315

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L  + +G     +     F S   +  SL+  YA  G +++A  V+++M E+D V +
Sbjct: 316 CASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVF 375

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           N+VI+G A  G+   A  +F +M   G+ P+ +T V L   C   G +  GR   ++   
Sbjct: 376 NAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSH 435

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEAL 330
              ++  +     ++D  ++ G +  A  + + M  K N + W +L+ G  ++   + A 
Sbjct: 436 DFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAE 495

Query: 331 ELFKEM-EIGGFVPGEVTFVGVLYACS 356
            + K++ E+  +  G    +  +Y+ S
Sbjct: 496 HVLKQLIELEPWNSGHYVLLSNIYSAS 522


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/521 (42%), Positives = 323/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  WNTMIRG+ +S     A   + +M   G+ PD  TY  +L A ++
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACAR 343

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G++ H+ A ++G  S V   N+L++MY+  G +KDA +VF+ M +RD+V+W ++
Sbjct: 344 PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTL 403

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           +  +A   +  E+ T F++M  +GV+ +  T + +  AC+   AL  G+  H  V K GL
Sbjct: 404 LGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGL 463

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V NAL+  Y KCG +  A RVF  M  R+ V+W+TL+ GL  NG G EAL+ ++ 
Sbjct: 464 LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEV 523

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P   TFV VL AC  C +V+EG   F  M  +YGI+P  +H+ CMVD+L RAG
Sbjct: 524 MKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAG 583

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A + I  + + P+A +W  LL AC IH +  I E A    L+LEP+++G YV LS 
Sbjct: 584 HLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSA 643

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W +V ++R+ M +  VKK PG S +E+   V  F   D+SHP+T+EI+A L  
Sbjct: 644 IYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELET 703

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + K++K  GYVP T  V  D+++E KE A+ +HSEK+AIA+ L++T PGTP+R+ KNLRV
Sbjct: 704 LKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRV 763

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+ RD  RFHHFK+G CSC DYW
Sbjct: 764 CTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 185/382 (48%), Gaps = 14/382 (3%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           + LLQ C  +K     KQVH   +R GV  N      Y+   ++ L      ++ A  +F
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPN-----VYITNTLLKLYAHCGSVNEARQLF 86

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
               + ++ +WN MI GYA       A  L++ M    ++PD  T+  +L A S  A + 
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G + H   +  G  +   V N+L+ MYA  G V+DA +VF+ M+ RD V+W ++   +A
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +G   E+L  +  M  E V P   T +++ SAC  L AL  G++ H ++ +     +V 
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVR 266

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V+ AL   Y KCG    A+ VF  +  R+ ++W+T++ G   +G  +EA   F  M   G
Sbjct: 267 VSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG 326

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P   T+  VL AC+  G +  G     R   + G++  +     ++++  +AG +K A
Sbjct: 327 VAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDA 385

Query: 401 YEYIQNMLMPPNAVI-WRTLLG 421
            +      MP   V+ W TLLG
Sbjct: 386 RQVFDR--MPKRDVVSWTTLLG 405



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 136/231 (58%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           +H  G + D++ Y  LL++  K  D+ +G+Q H   +R G +  V++ N+L+ +YA  G 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V +A ++F+  S + +V+WN +I+G+A  G   EA  LF  M  E +EPD +T VS+ SA
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C+    L  GR  H  V + GL+++  V NAL+  Y+KCG +  A+RVF  M  R+ VSW
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +TL    A +G+G+E+L+ +  M      P  +T++ VL AC     +++G
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 47  TLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L  CA      + K++HA + + G+ +++   G  LI  + S +  M  A  +F  + 
Sbjct: 336 TVLSACARPGGLARGKEIHARAAKDGL-VSDVRFGNALI-NMYSKAGSMKDARQVFDRMP 393

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++ +W T++  YA+    + +   + +M   G+K +  TY  +LKA S    ++ G++
Sbjct: 394 KRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE 453

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+  ++ G  + + V N+L+ MY   G V+DA +VFE MS RD+V WN++I G   NG+
Sbjct: 454 IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGR 513

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNN 283
             EAL  +  M SEG+ P+  T V++ SAC     +  GRR   ++ K  G+        
Sbjct: 514 GLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYA 573

Query: 284 ALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN 323
            ++D  ++ G +  A+ V   +  K +A  W  L+    ++
Sbjct: 574 CMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIH 614


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 340/579 (58%), Gaps = 6/579 (1%)

Query: 38   ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
            + SV+R C +L   C    H   Q+HA +++ GV L++       +  + S S  M  A 
Sbjct: 1010 VASVLRACSSLGGGC----HLATQIHACAMKAGVVLDS--FVSTTLIDVYSKSGKMEEAE 1063

Query: 98   NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
             +F +    ++ +WN M+ GY  S +   A+ LY  M  SG + +  T     KA   L 
Sbjct: 1064 FLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLV 1123

Query: 158  DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
             ++ G+Q  +V ++ GF   +FV + ++ MY   G ++ A ++F  +   D VAW ++I+
Sbjct: 1124 GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMIS 1183

Query: 218  GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            G   NG+   AL  +  M    V+PD YT  +L  AC+ L AL  GR+ H    K+  + 
Sbjct: 1184 GCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAF 1243

Query: 278  NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            +  V  +L+D Y+KCG I  A+ +F+        SW+ ++VGLA +G  +EAL+ F+EM+
Sbjct: 1244 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMK 1303

Query: 338  IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
              G  P  VTF+GVL ACSH G+V E +  F  M+  YGI P+IEH+ C+VD L RAG +
Sbjct: 1304 SRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRI 1363

Query: 398  KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            ++A + I +M    +A ++RTLL AC +       +     LL LEP  S  YVLLSN+Y
Sbjct: 1364 REAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVY 1423

Query: 458  AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
            A   +W NV   R  M K  VKK PG S V+L N+V  F  GDRSH +T+ I+  +  I 
Sbjct: 1424 AAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIM 1483

Query: 518  KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K+++ EGY+P T+    D+EEE+KE +L YHSEK+AIA+ L+ T P T +RV+KNLRVC 
Sbjct: 1484 KRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCG 1543

Query: 578  DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIK ISKV+ RE+V+RD +RFHHF+ G CSC DYW
Sbjct: 1544 DCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 184/407 (45%), Gaps = 46/407 (11%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
            KQ+H   +R G+      +G  LI   V     +S A  +F  + + ++ +WNTMI G A
Sbjct: 926  KQIHGIVVRSGLD-QVVSVGNCLINMYVKTG-SVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 120  ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLV 178
             S     +V ++  +   G+ PD  T   +L+A S L     +  Q H+ A++ G     
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            FV  +L+ +Y+  G +++A  +F      DL +WN++++G+  +G   +AL L+  M   
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQES 1103

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            G   +  T+ +   A   L  L  G++    V K G + ++ V + +LD Y KCG + +A
Sbjct: 1104 GERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-- 356
            +R+F E+   + V+W+T++ G   NG  + AL  +  M +    P E TF  ++ ACS  
Sbjct: 1164 RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLL 1223

Query: 357  ---------------------------------HCGMVDEGFSYFKRMKDEYGIMPKIEH 383
                                              CG +++    FKR         +I  
Sbjct: 1224 TALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTN-----TSRIAS 1278

Query: 384  FGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
            +  M+  L + G  ++A ++ + M    + P+ V +  +L AC+  G
Sbjct: 1279 WNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSG 1325



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 161/326 (49%), Gaps = 9/326 (2%)

Query: 107  NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
            ++  WN  +  + +      AV+ +  M  S +  D  T+  +L  ++ L  + +G+Q H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 167  SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
             + +R+G + +V V N L++MY   G V  A  VF  M+E DLV+WN++I+G A +G   
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 227  EALTLFREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNAL 285
             ++ +F ++   G+ PD +T+ S+  AC+ L G   L  + H    K G+  +  V+  L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 286  LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
            +D YSK G +  A+ +F      +  SW+ ++ G  V+G   +AL L+  M+  G    +
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109

Query: 346  VTFVGVLYACSHCGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            +T      A    G+V  G    K+++    + G    +     ++D+  + G ++ A  
Sbjct: 1110 ITLANAAKAAG--GLV--GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA-R 1164

Query: 403  YIQNMLMPPNAVIWRTLLGACTIHGH 428
             I N +  P+ V W T++  C  +G 
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQ 1190



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM- 204
           +  L  AI+  +D+ +G++ H+  + +G     F+ N+L+ MY+  G +  A K+F+   
Sbjct: 630 FSILRHAIAA-SDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTP 688

Query: 205 -SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
            + RDLV WN++++  A   K  +   LFR +    V    +T+  +F  C    + +  
Sbjct: 689 DTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAA 746

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H Y  K+GL  +V V  AL++ Y+K G I  A+ +F  M  R+ V W+ ++      
Sbjct: 747 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDT 806

Query: 324 GFGKEALELFKEMEIGGFVPGEVTF 348
           G   EAL LF E    G  P +VT 
Sbjct: 807 GLEYEALLLFSEFNRTGLRPDDVTL 831



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 157/379 (41%), Gaps = 49/379 (12%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDP--NIFTWNTM 114
           K+ HA  +  G   ++PD  ++L   ++++      +S A  +F    D   ++ TWN +
Sbjct: 646 KRAHARILTSG---HHPD--RFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAI 700

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           +  +A+ A       L+  +  S +    HT   + K     A     E  H  A++ G 
Sbjct: 701 LSAHADKARD--GFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGL 758

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           +  VFV  +LV++YA FG +++A  +F+ M  RD+V WN ++  +   G   EAL LF E
Sbjct: 759 QWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSE 818

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
               G+ PD  T+ +L        A  +  + +   W++     +      L  Y     
Sbjct: 819 FNRTGLRPDDVTLCTL--------ARVVKSKQNVLEWQL---KQLKAYGTKLFMYDD--- 864

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
                    +    + ++W+  +      G   EA++ F +M         +TFV +L  
Sbjct: 865 ---------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSV 915

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPK------IEHFGCMVDLLGRAGLVKQAYEYIQNML 408
            +       G +  +  K  +GI+ +      +    C++++  + G V +A      M 
Sbjct: 916 VA-------GLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM- 967

Query: 409 MPPNAVIWRTLLGACTIHG 427
              + V W T++  C + G
Sbjct: 968 NEVDLVSWNTMISGCALSG 986


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/542 (42%), Positives = 322/542 (59%), Gaps = 32/542 (5%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ TW  +I GY+ +     AV+ ++ M   GI PD  T   +L A  +L D+  G   H
Sbjct: 201 NVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLH 260

Query: 167 SVA---------------------------IRNGFESLVFVQ-----NSLVHMYAAFGHV 194
            +                             R  F++L   +     N+++  Y   GHV
Sbjct: 261 MLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHV 320

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  +F+ M + D++ +NS+I G+   G+  EAL LF +M   G+  D +TMV L +A 
Sbjct: 321 DIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTAS 380

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A LGAL  GR  H  + +  +  +V +  ALLD Y KCG +  A   F++M  R+  +WS
Sbjct: 381 ASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWS 440

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GLA NG GK ALE F  M+  GF    VT++ VL ACSH  ++DEG  YF  M+  
Sbjct: 441 AMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLL 500

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           + I P+IEH+GCM+DLLGR+GL+ +A + +Q M M PNAVIW ++L AC +H +  +A+ 
Sbjct: 501 HNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQN 560

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   LL+LEP     YV + N+Y   ++W +  ++RR M K  VKKT G+S + +  +V 
Sbjct: 561 AAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVH 620

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           +F +GDRSHPQ  EI  M+ EI ++LK  GY P T  +  D++EEEKE AL  HSEK+AI
Sbjct: 621 KFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAI 680

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF LV+ AP  PV ++KNLRVC DCH AIKLIS++++REI+VRDRSRFHHF+ G CSC D
Sbjct: 681 AFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCND 740

Query: 615 YW 616
           +W
Sbjct: 741 FW 742



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 194/444 (43%), Gaps = 75/444 (16%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYL--IYAIVSLSFPM--SYAHNIFSHVQDPNIFT 110
           S  +  ++HA     G  L+ P     L  + + +S S P+   YA ++F  +   + F 
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMP-CSTFL 69

Query: 111 WNTMIRG-YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL-ADVRMGEQTHSV 168
           ++T +R  +  S+ P   + LY +MH   + PD  T+ FL K  ++  A V +G   H+ 
Sbjct: 70  FDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAA 129

Query: 169 AIRNGFESLV-FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS------------- 214
             R    S V  + + ++HMYA  G   DA + F+  S +D+VAW +             
Sbjct: 130 CFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDD 189

Query: 215 ------------------VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
                             +I+G++  G+  EA+  F  M S+G+ PD  T++ + SAC +
Sbjct: 190 ARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQ 249

Query: 257 LGALALGRRAHTYVW--KVGLSDNVNVN------------------------------NA 284
           L  L  G   H  V   ++ +SD + V                               NA
Sbjct: 250 LKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNA 309

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           ++D Y K G +  A+ +F +M   + +++++L+ G    G  +EAL LF +M   G    
Sbjct: 310 MIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGAD 369

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGLVKQAYEY 403
             T VG+L A +  G + +G +    +  E  ++ +  + G  ++D+  + G V++A   
Sbjct: 370 NFTMVGLLTASASLGALPQGRALHACI--EQRLVERDVYLGTALLDMYMKCGRVEEAMVA 427

Query: 404 IQNMLMPPNAVIWRTLLGACTIHG 427
            + M +  +   W  ++G    +G
Sbjct: 428 FKQMSV-RDVHTWSAMIGGLAFNG 450



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  ++D ++ T+N++I GY        A+ L++KM   G+  D  T   LL A + 
Sbjct: 323 ARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASAS 382

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G   H+   +   E  V++  +L+ MY   G V++A   F+ MS RD+  W+++
Sbjct: 383 LGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAM 442

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG    AL  F  M  +G   +  T +++ +AC+    L  GR    Y  ++ L
Sbjct: 443 IGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGR---LYFDEMRL 499

Query: 276 SDNVNVN----NALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
             N+         ++D   + G++  A  + + M  + NAV W++++
Sbjct: 500 LHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASIL 546



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 39/285 (13%)

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
           H++ A  +F+ M     +   ++   F ++  P+  + L+R M    V PD +T   LF 
Sbjct: 52  HLRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFK 111

Query: 253 ACAELGA-LALGRRAHTYVWKVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            CA  GA + LGR  H   ++  L   V  + + ++  Y++ G+   A+R F E   ++ 
Sbjct: 112 CCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDV 171

Query: 311 VSWSTLVVGLA--------------------------VNGFGK-----EALELFKEMEIG 339
           V+W+T++ GLA                          ++G+ +     EA++ F  M   
Sbjct: 172 VAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSD 231

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EVT +G+L AC     ++ G S    + D+  +M   +    ++D+  + G   +
Sbjct: 232 GIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSD-KLVVALIDMYAKCGDTGR 290

Query: 400 AYEYIQNMLMPPNAVIWRTLL-GACTIHGHSAIAEIARSTLLQLE 443
           A E    +        W  ++ G C + GH    +IARS   Q+E
Sbjct: 291 AREVFDALGRGRGPQPWNAMIDGYCKV-GH---VDIARSLFDQME 331


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/597 (39%), Positives = 359/597 (60%), Gaps = 52/597 (8%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN--------IFSHVQDPNIFTWN 112
           Q+HA  +RH + L +P       Y +++L    +YA +        +F    DP++F + 
Sbjct: 45  QIHAAILRHNL-LIHPR------YPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 97

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
             I   + +     A  LY ++  S I P+  T+  +LK+ S     + G+  H+  ++ 
Sbjct: 98  AAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKF 153

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------------------------- 207
           G     +V   LV +YA  G V  A KVF+ M ER                         
Sbjct: 154 GLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF 213

Query: 208 ------DLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGAL 260
                 D+V+WN +I+G++ +G P++AL LF+++ ++G  +PD  T+V+  SAC+++GAL
Sbjct: 214 DRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGAL 273

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H +V    +  NV V  AL+D YSKCG +  A  VF +  +++ V+W+ ++ G 
Sbjct: 274 ETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGY 333

Query: 321 AVNGFGKEALELFKEME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           A++G+ ++AL LF EM+ I G  P ++TF+G L AC+H G+V+EG   F+ M  EYGI P
Sbjct: 334 AMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKP 393

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           KIEH+GC+V LLGRAG +K+AYE I+NM M  ++V+W ++LG+C +HG   + +     L
Sbjct: 394 KIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYL 453

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           +     +SG YVLLSN+YA    +  V +VR  M ++ + K PG S +E+ N+V EF  G
Sbjct: 454 IGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAG 513

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           DR H +++EI+ ML ++++++K  GYVP T  V  D+EE EKE +L  HSE++AIA+ L+
Sbjct: 514 DREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLI 573

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +T PG+P+++ KNLRVC+DCH   KLISK+  R+IV+RDR+RFHHF DG CSC D+W
Sbjct: 574 STKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/556 (40%), Positives = 343/556 (61%), Gaps = 3/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           + HAF+IR G+     ++   ++ A       +  A  +F  +   N  +WN MI GYA+
Sbjct: 182 EAHAFAIRSGLE-ELVNVATAILDAYCKCG-DIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           + +   A+ L+++M   G+     +    L+A  +L  +  G + H + +R G +S V V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+L+ MY+    V  A  VF+ +  R  V+WN++I G A NG   +A+ LF  M  E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD +T+VS+  A A++      R  H Y  ++ L  +V V  AL+D Y+KCG +  A+ 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F   R+R+ ++W+ ++ G   +GFGK A+ELF+EM+  G VP E TF+ VL ACSH G+
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEG  YF  MK++YG+ P +EH+G MVDLLGRAG + +A+ +IQ M M P   ++  +L
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAML 539

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC +H +  +AE +   + +L P+    +VLL+N+YA    W +V  VR  M K  ++K
Sbjct: 540 GACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQK 599

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
           TPG S+++L N +  F+ G  +H Q +EI++ LA++ +++K  GYVP T+++  D+E++ 
Sbjct: 600 TPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH-DVEDDV 658

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           K   L+ HSEK+AIAF L+ TAPGT +++ KNLRVC DCH A KLIS V  REI++RD  
Sbjct: 659 KAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQ 718

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC DYW
Sbjct: 719 RFHHFKDGKCSCGDYW 734


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 357/577 (61%), Gaps = 13/577 (2%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           I++L+ CAS    ++ K +H   I+ G+   NPD   +L  ++V++       +YA  +F
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGI---NPD--SHLWNSLVNVYAKCGSANYACKVF 249

Query: 101 SHVQDPNIFTWNTMIRGY-AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
             + + ++ +W  +I G+ AE       + ++++M   G  P+ +T+  +L++ S L+DV
Sbjct: 250 GEIPERDVVSWTALITGFVAEGYGS--GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +G+Q H+  ++N  +   FV  +LV MYA    ++DA  +F  + +RDL AW  ++ G+
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 367

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A +G+  +A+  F +M  EGV+P+ +T+ S  S C+ +  L  GR+ H+   K G S ++
Sbjct: 368 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 427

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V +AL+D Y+KCG +  A+ VF  +  R+ VSW+T++ G + +G G +AL+ F+ M   
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G VP EVTF+GVL ACSH G+++EG  +F  +   YGI P IEH+ CMVD+LGRAG   +
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
              +I+ M +  N +IW T+LGAC +HG+    E A   L +LEP+   +Y+LLSN++A 
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 607

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
           +  W +V  VR  M    VKK PG S VE+  +V  F   D SHP+  EIH  L ++ +K
Sbjct: 608 KGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQK 667

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           L   GY P T++V  ++ + EK++ L YHSE++A+AF L++T+    +R+ KNLR+C DC
Sbjct: 668 LMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDC 727

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H  +K IS++ ++E+VVRD + FHHFK+G CSC+++W
Sbjct: 728 HDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 159/313 (50%), Gaps = 9/313 (2%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           +K+ LK++    I++G+    PD  L   L+   V     +  A  +   +   ++  WN
Sbjct: 4   AKYILKKIIFRVIKNGIC---PDSHLWSSLVNVYVKCE-SLQCARQVLEEMPIQDVQQWN 59

Query: 113 TMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
             +   A S  PL  AV+L+  M  + I+ +   +  L+ A + L D   GE  H+   +
Sbjct: 60  QKLSS-ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK 118

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFES + + N+ V MY     V++  + F+ M   +L + N++++GF      ++   +
Sbjct: 119 YGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRI 178

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
             ++  EG EP+ YT +S+   CA  G L  G+  H  V K G++ + ++ N+L++ Y+K
Sbjct: 179 LIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAK 238

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG    A +VF E+ +R+ VSW+ L+ G    G+G   L +F +M   GF P   TF+ +
Sbjct: 239 CGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISI 297

Query: 352 LYACSHCGMVDEG 364
           L +CS    VD G
Sbjct: 298 LRSCSSLSDVDLG 310


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/518 (42%), Positives = 315/518 (60%), Gaps = 1/518 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   N+ +WNTMI GYA++     A   + KM   G++P   +    L A + L D
Sbjct: 300 VFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGD 359

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G   H +         V V NSL+ MY+    V  A  VF  +  + +V WN++I G
Sbjct: 360 LERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILG 419

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG  NEAL LF EM S  ++PD +T+VS+ +A A+L      +  H    +  +  N
Sbjct: 420 YAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKN 479

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V  AL+D ++KCG I  A+++F  M++R+ ++W+ ++ G   NG G+EAL+LF EM+ 
Sbjct: 480 VFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN 539

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
           G   P E+TF+ V+ ACSH G+V+EG  YF+ MK+ YG+ P ++H+G MVDLLGRAG + 
Sbjct: 540 GSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            A+++IQ+M + P   +   +LGAC IH +  + E     L  L+P   G +VLL+N+YA
Sbjct: 600 DAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYA 659

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
               W  V  VR  M K+ ++KTPG SLVEL N V  F+ G  +HPQ++ I+A L  +  
Sbjct: 660 SASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGD 719

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           ++K  GYVP T N   D+EE+ KE  LS HSE++AIAF L+NT  GT + + KNLRVC D
Sbjct: 720 EMKAAGYVPDT-NSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGD 778

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K IS V  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 779 CHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 202/373 (54%), Gaps = 5/373 (1%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           LL++C S K +L Q+    I++G    N  L +  + ++      ++ A  +F  V+   
Sbjct: 50  LLELCTSLK-ELHQILPLIIKNG--FYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKL 106

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
              ++TM++GYA+++    AV  Y +M    + P  + + +LL+   +  D+R G + H 
Sbjct: 107 DVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG 166

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           + I NGF+S +F   ++V++YA    ++DA K+FE M +RDLV+WN+V+ G+A NG    
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ +  +M   G +PD  T+VS+  A A+L AL +GR  H Y ++ G    VNV  A+LD
Sbjct: 227 AVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLD 286

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y KCG + +A+ VF+ M  RN VSW+T++ G A NG  +EA   F +M   G  P  V+
Sbjct: 287 TYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVS 346

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            +G L+AC++ G ++ G  Y  R+ DE  I   +     ++ +  +   V  A     N 
Sbjct: 347 MMGALHACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGN- 404

Query: 408 LMPPNAVIWRTLL 420
           L     V W  ++
Sbjct: 405 LKHKTVVTWNAMI 417


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 351/579 (60%), Gaps = 14/579 (2%)

Query: 46  ITLLQVC--ASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           ++LL  C  A   ++   +H++SI+HG+     ++N  +  Y  +        +     +
Sbjct: 251 VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG------RLRDCQKV 304

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   ++ +WN++I+ Y  +  PL A+ L+ +M +S I+PD  T   L   +S+L D+
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364

Query: 160 RMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           R         +R G F   + + N++V MYA  G V  A  VF  +   D+++WN++I+G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424

Query: 219 FASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           +A NG  +EA+ ++  M  EG +  +  T VS+  AC++ GAL  G + H  + K GL  
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +V V  +L D Y KCG +  A  +F ++ + N+V W+TL+     +G G++A+ LFKEM 
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P  +TFV +L ACSH G+VDEG   F+ M+ +YGI P ++H+GCMVD+ GRAG +
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           + A ++I++M + P+A IW  LL AC +HG+  + +IA   L ++EP+H G +VLLSN+Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A   +W  V E+R     + ++KTPG S +E+ N+V  F+ G+++HP  EE++  L  + 
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQ 724

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            KLK+ GYVP    V  D+E++EKE  L  HSE++AIAF L+ T   T +R+ KNLRVC 
Sbjct: 725 AKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCG 784

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH   K ISK+  REI+VRD +RFHHFK+G CSC DYW
Sbjct: 785 DCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 192/363 (52%), Gaps = 10/363 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GY +S N   A+ L + +       D+ T   LL A ++
Sbjct: 204 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTE 259

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D   G   HS +I++G ES +FV N L+ +YA FG ++D  KVF+ M  RDL++WNS+
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG- 274
           I  +  N +P  A++LF+EM    ++PD  T++SL S  ++LG +   R    +  + G 
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 379

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
             +++ + NA++  Y+K G++ +A+ VF  +   + +SW+T++ G A NGF  EA+E++ 
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 335 EMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            ME  G +   + T+V VL ACS  G + +G     R+    G+   +     + D+ G+
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGK 498

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYV 451
            G ++ A       +   N+V W TL+     HGH   A +    +L   ++P H     
Sbjct: 499 CGRLEDALSLFYQ-IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557

Query: 452 LLS 454
           LLS
Sbjct: 558 LLS 560



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 178/347 (51%), Gaps = 21/347 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK-MHVSGIKPDTHTYPFLLK 151
           ++ A + F H+Q+ +++ WN MI GY  + N    +  +S  M  SG+ PD  T+P +LK
Sbjct: 102 VALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLK 161

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   + D   G + H +A++ GF   V+V  SL+H+Y+ +  V +A  +F+ M  RD+ +
Sbjct: 162 ACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEP-DGYTMVSLFSACAELGALALGRRAHTYV 270
           WN++I+G+  +G   EALTL     S G+   D  T+VSL SAC E G    G   H+Y 
Sbjct: 219 WNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K GL   + V+N L+D Y++ G +   Q+VF  M  R+ +SW++++    +N     A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD-----EGFSYFKRMKDEYGIMPKIEHFG 385
            LF+EM +    P  +T + +    S  G +      +GF+  K        +  I    
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW-----FLEDITIGN 388

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +V +  + GLV  A   + N L   + + W T++     +G ++ A
Sbjct: 389 AVVVMYAKLGLVDSA-RAVFNWLPNTDVISWNTIISGYAQNGFASEA 434



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 140/311 (45%), Gaps = 18/311 (5%)

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           ++IR ++ SAN L   + +   + S    D HT   L +  + L   +     H+  + +
Sbjct: 29  SVIREFSASANALQ--DCWKNGNESKEIDDVHT---LFRYCTNLQSAKC---LHARLVVS 80

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
                V +   LV++Y   G+V  A   F+ +  RD+ AWN +I+G+   G  +E +  F
Sbjct: 81  KQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCF 140

Query: 233 RE-MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
              M S G+ PD  T  S+  AC     +  G + H    K G   +V V  +L+  YS+
Sbjct: 141 SLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR 197

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
              +  A+ +F EM  R+  SW+ ++ G   +G  KEAL L   +         VT V +
Sbjct: 198 YKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSL 253

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC+  G  + G +       ++G+  ++     ++DL    G ++   +    M +  
Sbjct: 254 LSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV-R 311

Query: 412 NAVIWRTLLGA 422
           + + W +++ A
Sbjct: 312 DLISWNSIIKA 322


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 335/526 (63%), Gaps = 6/526 (1%)

Query: 93  MSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           M  A ++FS +++  N+ +W  MI G  ++     AV L+S+M   G+KP+  TY  +L 
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
               +    M    H+  I+  +E    V  +L+  Y   G+  DA KVFE++  +DL+A
Sbjct: 406 VHYPVFVSEM----HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMA 461

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA-LGRRAHTYV 270
           W++++ G+A  G+  EA  LF ++  EG++P+ +T  S+ +ACA   A A  G++ H Y 
Sbjct: 462 WSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYA 521

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K+ L++ + V++AL+  Y+K G I +A  VF+  ++R+ VSW++++ G + +G  K+AL
Sbjct: 522 IKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKAL 581

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           E+F EM+        VTF+GV+ AC+H G+V++G  YF  M +++ I P ++H+ CM+DL
Sbjct: 582 EVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDL 641

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
             RAG++++A   I  M  PP A +WRTLLGA  +H +  + E+A   L+ L+P+ S  Y
Sbjct: 642 YSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAY 701

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VLLSN+YA    W     VR+ M K +VKK PG+S +E+ N+ + F  GD +HP + +I+
Sbjct: 702 VLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIY 761

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
           + L+E++ +LK  GY P T+NVF DIE+E+KE  LS+HSE++AIAF L+ T P  P+++V
Sbjct: 762 SKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIV 821

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH   KL+S V  R IVVRD +RFHHFKDG CSC DYW
Sbjct: 822 KNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 169/331 (51%), Gaps = 12/331 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASS-KHKL-KQVHAFSIRHGVPLNNPDLGKYL 82
           SL HS+    E+ ++ V         +CA S   KL +QVH   ++ G+ +++  +G  L
Sbjct: 83  SLLHSSLQPDESTLSCV-------FNICAGSLDGKLGRQVHCQCVKFGL-VDHVSVGTSL 134

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +   +     ++    +F  + + N+ +W +++ GY+ +       EL+ +M   G+ P+
Sbjct: 135 VDMYMKTE-NVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPN 193

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +T   ++ A+     V +G Q H++ +++GFE  + V NSL+ +Y+  G ++DA  VF+
Sbjct: 194 RYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFD 253

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M  RD V WNS+I G+  NG+  E   +F +M   GV+P   T  S+  +CA L  LAL
Sbjct: 254 KMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELAL 313

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLA 321
            +       K G + +  V  AL+   SKC  +  A  +F  M + +N VSW+ ++ G  
Sbjct: 314 VKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCL 373

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
            NG   +A+ LF +M   G  P   T+  +L
Sbjct: 374 QNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 25/345 (7%)

Query: 96  AHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           AHN+F  +  +   +   N ++  Y+       A+ L+  +  S ++PD  T   +    
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           +   D ++G Q H   ++ G    V V  SLV MY    +V D  +VF+ M ER++V+W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S++ G++ NG       LF +M  EGV P+ YT+ ++ +A    G + +G + H  V K 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G  + + V N+L+  YS+ G++  A+ VF +M  R+ V+W++++ G   NG   E  E+F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 334 KEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEYGIMPKIE 382
            +M++ G  P  +TF  V+ +C+            C  +  GF+  + +     +M  + 
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT--ALMVALS 341

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
               M D L    L+++            N V W  ++  C  +G
Sbjct: 342 KCKEMDDALSLFSLMEEG----------KNVVSWTAMISGCLQNG 376



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N ++  ++ + +  EAL LF  +    ++PD  T+  +F+ CA      LGR+ H    K
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            GL D+V+V  +L+D Y K   +   +RVF EM +RN VSW++L+ G + NG      EL
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F +M+  G +P   T   V+ A  + G+V  G      M  ++G    I  F  ++ L  
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS-AIAEI-ARSTLLQLEPKH 446
           R G+++ A +    M +  + V W +++     +G    + EI  +  L  ++P H
Sbjct: 241 RLGMLRDARDVFDKMEI-RDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTH 295


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/581 (40%), Positives = 351/581 (60%), Gaps = 13/581 (2%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYA 96
           + S+++KC TL  +     H L     F++R      +P   + L +  +S S   + YA
Sbjct: 4   MDSIIQKCTTLSHIKQVQAHLLT-TGQFNLR-----ISPSRTRLLEHCALSPSPAYLPYA 57

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
            +I  H+  P+   +N ++RG A   +P  A+   S +    + PD  T+ F L A ++ 
Sbjct: 58  AHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTI----LHPDALTFSFSLIASARA 113

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             +    Q HS  +R G  + + +  +L+  YA  G +  A +VF+ +  RD+ AWN++I
Sbjct: 114 LALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALI 173

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            G A   K +EAL LF  M +EG + +  +++   +AC++LGAL  G   H  V K+ L 
Sbjct: 174 AGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLD 233

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            NV V NA++D Y+KCG      RVF  M   ++ V+W+T+++  A++G G  ALELF+E
Sbjct: 234 INVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEE 293

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M         VT++ VL AC+H G+V+EG   F  M    G+   ++H+G +VDLLGRAG
Sbjct: 294 MGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAG 352

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +AY  I +M + P+ V+W++LLGAC  +G+  +AE+A   L+++     GD+VLLSN
Sbjct: 353 RLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSN 412

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  +RW +V  VR  M    V+K PG S +E+   + +F  GD+SHP   EI+A L E
Sbjct: 413 VYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDE 472

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I  ++K  GYV  T  V  DI EE+KE+AL +HSEK+A+AF L++T+ GTP+RV KNLR+
Sbjct: 473 IRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRI 532

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+ IKLISK+Y +EI+VRDR+RFH FKDG CSCRDYW
Sbjct: 533 CGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/518 (39%), Positives = 320/518 (61%), Gaps = 1/518 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +    + TW ++I  YA       A+ L+ +M   G+ PD  T   +L A +    
Sbjct: 55  VFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGS 114

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G+  H+    N  +S +FV N+L+ MYA  G ++DA  VF  M  +D+++WN++I G
Sbjct: 115 LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGG 174

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           ++ N  PNEAL+LF +M  E ++PDG T+  +  ACA L +L  G+  H ++ + G   +
Sbjct: 175 YSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSD 233

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             V NAL+D Y KCG+ + A+ +F  +  ++ ++W+ ++ G  ++GFG  A+  F EM  
Sbjct: 234 QQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQ 293

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P EV+F+ +LYACSH G++DEG+ +F  M+DE  + PK+EH+ C+VDLL R+G + 
Sbjct: 294 AGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLA 353

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            AY++I++M + P+A IW  LL  C IH    +AE     + +LEP+++G YVLL+N YA
Sbjct: 354 MAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYA 413

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             ++W  V+++R+ + +  +KK PG S +E+ ++V  F  G+ SHPQ ++I  +L  +  
Sbjct: 414 EAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRS 473

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EGY P+T     + +  +KE AL  HSEK+A+AF ++N  P   +RV KNLRVC D
Sbjct: 474 KMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGD 533

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K ISK   REIV+RD +RFHHFKDG C CR +W
Sbjct: 534 CHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L+A +   DV +G   H   ++          N+L+ MYA  G +  A  VF+LMS R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V W S+I  +A  G  +EA+ LF EM  EGV PD +T+ ++  ACA  G+L  G+  H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           Y+ +  +  N+ V NAL+D Y+KCG +  A  VF EM  ++ +SW+T++ G + N    E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL LF +M +    P   T   +L AC+    +D G      +    G     +    +V
Sbjct: 184 ALSLFGDMVL-EMKPDGTTLACILPACASLASLDRGKEVHGHIL-RNGFFSDQQVANALV 241

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKH 446
           D+  + G+   A   + +M+   + + W  ++    +H  G++AI          +EP  
Sbjct: 242 DMYVKCGVPVLA-RLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPD- 299

Query: 447 SGDYVLLSNLYA 458
             +   +S LYA
Sbjct: 300 --EVSFISILYA 309



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 154/324 (47%), Gaps = 33/324 (10%)

Query: 14  EEISDLPCRVKSLYHSTPASQENP----ITSVVRKCITLLQVCASSKHKLKQVHAFSIRH 69
           E +SD   R   L+H       +P    IT+V+  C      C  S    K VH + IR 
Sbjct: 77  EGLSDEAIR---LFHEMDREGVSPDIFTITTVLHAC-----ACNGSLENGKDVHNY-IRE 127

Query: 70  GVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL 126
               N+     ++  A++ +      M  A+++F  +   +I +WNTMI GY++++ P  
Sbjct: 128 ----NDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+ L+  M V  +KPD  T   +L A + LA +  G++ H   +RNGF S   V N+LV 
Sbjct: 184 ALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G    A  +F+++  +DL+ W  +I G+  +G  N A+T F EM   G+EPD  +
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL------LDFYSKCGIIIAAQR 300
            +S+  AC+  G L  G R         + D  NV   L      +D  ++ G +  A +
Sbjct: 303 FISILYACSHSGLLDEGWRFFNV-----MQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 301 VFREMR-KRNAVSWSTLVVGLAVN 323
             + M  + +A  W  L+ G  ++
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIH 381



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           MVS+  ACA  G ++LGR  H    K  +       N LLD Y+KCG++  A  VF  M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            R  V+W++L+   A  G   EA+ LF EM+  G  P   T   VL+AC+  G ++ G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGA 422
               ++ E  +   I     ++D+  + G ++ A      + MP   +I W T++G 
Sbjct: 121 VHNYIR-ENDMQSNIFVCNALMDMYAKCGSMEDANSVF--LEMPVKDIISWNTMIGG 174


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 335/556 (60%), Gaps = 5/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+H+ + + G   ++  L  ++  ++ S    +     +F   + P+I  +N MI GY  
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFI--SLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +    L++ L+ ++ +SG +  + T   L+     L  +      H   +++ F S   V
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHASV 356

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
             +L  +Y+    ++ A K+F+   E+ L +WN++I+G+  NG   +A++LFREM     
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            P+  T+  + SACA+LGAL+LG+  H  V       ++ V+ AL+  Y+KCG I  A+R
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F  M K+N V+W+T++ G  ++G G+EAL +F EM   G  P  VTF+ VLYACSH G+
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V EG   F  M   YG  P ++H+ CMVD+LGRAG +++A ++I+ M + P + +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL 596

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC IH  + +A      L +L+P + G +VLLSN+++ ++ +     VR+T  K ++ K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG++L+E+G     F  GD+SHPQ +EI+  L ++  K++  GY P TE    D+EEEE
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           +E  +  HSE++AIAF L+ T PGT +R++KNLRVC DCH   KLISK+  R IVVRD +
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDAN 776

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC DYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 167/311 (53%), Gaps = 4/311 (1%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           ++S   L Q HA  I HG   N+  L   L   +  L   + YA +IF  VQ P++F +N
Sbjct: 30  STSISHLAQTHAQIILHGFR-NDISLLTKLTQRLSDLG-AIYYARDIFLSVQRPDVFLFN 87

Query: 113 TMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            ++RG++ + +P  ++ +++ +  S  +KP++ TY F + A S   D R G   H  A+ 
Sbjct: 88  VLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           +G +S + + +++V MY  F  V+DA KVF+ M E+D + WN++I+G+  N    E++ +
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 232 FREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           FR++ +E     D  T++ +  A AEL  L LG + H+   K G   +  V    +  YS
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG I     +FRE RK + V+++ ++ G   NG  + +L LFKE+ + G      T V 
Sbjct: 268 KCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVS 327

Query: 351 VLYACSHCGMV 361
           ++    H  ++
Sbjct: 328 LVPVSGHLMLI 338


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 344/562 (61%), Gaps = 12/562 (2%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIRGY 118
           +H ++++HG+     D   ++  A++ +   +     A  +F  ++  ++ TWN++I G 
Sbjct: 191 MHVYAVKHGL-----DKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGC 245

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SL 177
            +      A++++  M  SG+ PD  T   L  AI++  D R  +  H   +R G++   
Sbjct: 246 EQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDD 305

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +   N++V MYA   +++ A ++F+ M  +D V+WN++I G+  NG  NEA+  +  M  
Sbjct: 306 IIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQK 365

Query: 238 -EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG++    T VS+  A + LGAL  G R H    K+GL+ +V V   L+D Y+KCG + 
Sbjct: 366 HEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLA 425

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +F +M +R+   W+ ++ GL V+G G EAL LF  M+  G  P  VTFV +L ACS
Sbjct: 426 EAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS 485

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+VD+G S+F  M+  Y I+P  +H+ CM D+LGRAG + +A+ +IQNM + P++ +W
Sbjct: 486 HAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVW 545

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LLGAC IHG+  + ++A   L +L+P++ G YVL+SN+YA   +W  V EVR  + ++
Sbjct: 546 GALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQ 605

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRS--HPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
            ++KTPG S +E+   V  F+ G+++  HPQ EEI A L  +  K++  GYV     V  
Sbjct: 606 NLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQ 665

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D+E++EKE  L+ HSE++AIAF ++NT   TP+ + KNLRVC DCH A K IS++  REI
Sbjct: 666 DVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREI 725

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           +VRD +RFHHFKDGHCSC D+W
Sbjct: 726 IVRDSNRFHHFKDGHCSCGDFW 747



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 201/399 (50%), Gaps = 9/399 (2%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           A S     Q+HA ++R G+   +      L++A +     +S A+ +F  + + ++  WN
Sbjct: 80  APSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFG-RISEAYKVFDEMSERDVPAWN 138

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            M+ G   +A    AV L+ +M   G+  DT T   +L     L D  +    H  A+++
Sbjct: 139 AMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKH 198

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G +  +FV N+L+ +Y   G +++A  VF  M  RDLV WNS+I+G    G+   AL +F
Sbjct: 199 GLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMF 258

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-DNVNVNNALLDFYSK 291
           + M   GV PD  T+VSL SA A+ G     +  H YV + G   D++   NA++D Y+K
Sbjct: 259 QGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAK 318

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVG 350
              I AAQR+F  M  +++VSW+TL+ G   NG   EA+E +  M+   G    + TFV 
Sbjct: 319 LSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVS 378

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL A SH G + +G      +  + G+   +    C++DL  + G + +A    +   MP
Sbjct: 379 VLPAYSHLGALQQGMR-MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEK--MP 435

Query: 411 PNAV-IWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKH 446
             +   W  ++    +HGH A A    S + Q  ++P H
Sbjct: 436 RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDH 474



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           NT+I  ++ +A P LA  L   +       +PD  T+P L++A    A      Q H+ A
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASA---AQLHACA 93

Query: 170 IRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           +R G     VF   SLVH Y  FG + +A KVF+ MSERD+ AWN++++G   N +  EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LF  M  EGV  D  T+ S+   C  LG   L    H Y  K GL   + V NAL+D 
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y K G++  AQ VF  M  R+ V+W++++ G    G    AL++F+ M   G  P  +T 
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 349 VGVLYACSHCG 359
           V +  A +  G
Sbjct: 274 VSLASAIAQGG 284


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/631 (37%), Positives = 343/631 (54%), Gaps = 75/631 (11%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+ VH+  I   +  N+  LG  L+ A  SL   ++ A  +F  + + N+   N MIR Y
Sbjct: 58  LRTVHSRIILEDLRCNSS-LGVKLMRAYASLK-DVASARKVFDEIPERNVIIINVMIRSY 115

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             +      V+++  M    ++PD +T+P +LKA S    + +G + H  A + G  S +
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 179 FVQ-------------------------------NSLVHMYAAFGHVKDACKV------- 200
           FV                                NSLV  YA      DA +V       
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 201 ------------------------------FELMSERDLVAWNSVINGFASNGKPNEALT 230
                                         F  M ++ LV+WN +I  +  N  P EA+ 
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+  M ++G EPD  ++ S+  AC +  AL+LG++ H Y+ +  L  N+ + NAL+D Y+
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 355

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+ VF  M+ R+ VSW+ ++     +G G +A+ LF +++  G VP  + FV 
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVT 415

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
            L ACSH G+++EG S FK M D Y I P++EH  CMVDLLGRAG VK+AY +IQ+M M 
Sbjct: 416 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           PN  +W  LLGAC +H  + I  +A   L QL P+ SG YVLLSN+YA   RW  V  +R
Sbjct: 476 PNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIR 535

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M  + +KK PG S VE+   +  F +GDRSHPQ++EI+  L  + KK+K  GYVP +E
Sbjct: 536 NIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSE 595

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTA-----PGTPVRVVKNLRVCADCHLAIKL 585
           +   D+EEE+KE  L+ HSEK+AI F L+NT          +R+ KNLR+C DCH+A KL
Sbjct: 596 SALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKL 655

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IS++ SREI++RD +RFH F+ G CSC DYW
Sbjct: 656 ISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           K    T   L + +    D+R     HS  I         +   L+  YA+   V  A K
Sbjct: 36  KSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARK 95

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           VF+ + ER+++  N +I  + +NG   E + +F  M    V PD YT   +  AC+  G 
Sbjct: 96  VFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGT 155

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           + +GR+ H    KVGLS  + V N L+  Y KCG +  A+ V  EM +R+ VSW++LVVG
Sbjct: 156 IVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVG 215

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            A N    +ALE+ +EME         T   +L A S+     E   Y K M  + G   
Sbjct: 216 YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMG-KK 272

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGAC 423
            +  +  M+ +  +  +  +A E    M      P+AV   ++L AC
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/558 (40%), Positives = 335/558 (60%), Gaps = 5/558 (0%)

Query: 60  KQVHAFSIRHGV-PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           K++H +++R G   L N       +YA       +  A  +F  + + N+ +WN+MI  Y
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCG---SLKTARLLFDGMLERNVVSWNSMIDAY 312

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++ NP  A+ ++ KM   G+KP   +    L A + L D+  G   H +++    +  V
Sbjct: 313 VQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNV 372

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V NSL+ MY     V  A  +F  +  R +V+WN++I GFA NG+P EAL  F +M + 
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQAR 432

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            V+PD +T VS+ +A AEL      +  H  V +  L  NV V  AL+D Y+KCG I+ A
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + +F  M +R+  +W+ ++ G   +G GK ALELF+EM+ G   P  VTF+ V+ ACSH 
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHS 552

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V+ G   F  MK+ Y I P ++H+G MVDLLGRAG + +A+++I  M + P   ++  
Sbjct: 553 GLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           +LGAC IH +   AE     L +L P+  G +VLL+N+Y     W  V +VR +M+++ +
Sbjct: 613 MLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +KTPG S+VE+ N V  FF G  +HP +++I+A L ++  ++K  GYVP T N+   +E+
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDT-NLILGLED 731

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           + KE  LS HSEK+AI+F L+NT  GT + V KNLRVCADCH A K IS V  REI+VRD
Sbjct: 732 DVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRD 791

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHFK+G CSC DYW
Sbjct: 792 MQRFHHFKNGACSCGDYW 809



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 228/475 (48%), Gaps = 66/475 (13%)

Query: 5   LMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKL--KQV 62
           L ++    + ++SDL   +K         +++ +  VV     LL+VC         K++
Sbjct: 102 LYYTMLKGFAKVSDLDKALKFFVRM----RDDEVEPVVYNFTYLLKVCGDEAELRVGKEI 157

Query: 63  HAFSIRHGVPLNNPDLGKYLIYAIVSLS------FPMSYAHNIFSHVQDPNIFTWNTMIR 116
           H   ++ G  L+        ++A+  L         +  A  +F  + + ++ +WNT++ 
Sbjct: 158 HGLLVKSGFSLD--------LFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVA 209

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY+++    +A+E+ + M    +KP   T   +L A+S L  +R+G++ H  A+R GF+S
Sbjct: 210 GYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDS 269

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           LV +  +LV MYA  G +K A  +F+ M ER++V+WNS+I+ +  N  P EA+ +F++M 
Sbjct: 270 LVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKML 329

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EGV+P   +++    ACA+LG L  GR  H    ++ L  NV+V N+L+  Y KC  + 
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVD 389

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +F +++ R  VSW+ +++G A NG   EAL  F +M+     P   T+V V+ A +
Sbjct: 390 TAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIA 449

Query: 357 H-----------------------------------CGMVDEGFSYFKRMKDEYGIMPKI 381
                                               CG +      F  M + +     +
Sbjct: 450 ELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----V 504

Query: 382 EHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
             +  M+D  G  G+ K A   +E +Q   + PN V + +++ AC+   HS + E
Sbjct: 505 TTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS---HSGLVE 556



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 187/355 (52%), Gaps = 19/355 (5%)

Query: 26  LYHSTPASQENPITSVVRKCIT----------------LLQVCASSKHKLKQVHAFSIRH 69
           L H +  SQ  PI+S  R  ++                LL+ C+S K +L+ +     ++
Sbjct: 5   LVHVSTVSQIPPISSSHRHFLSQRNYIPANVYEHPAALLLERCSSLK-ELRHILPLIFKN 63

Query: 70  GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           G  L    L +  + ++      +  A  +F  +       + TM++G+A+ ++   A++
Sbjct: 64  G--LYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALK 121

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
            + +M    ++P  + + +LLK     A++R+G++ H + +++GF   +F    L +MYA
Sbjct: 122 FFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               V +A KVF+ M ERDLV+WN+++ G++ NG    AL +   M  E ++P   T+VS
Sbjct: 182 KCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVS 241

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  A + L  + +G+  H Y  + G    VN+  AL+D Y+KCG +  A+ +F  M +RN
Sbjct: 242 VLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERN 301

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            VSW++++     N   KEA+ +F++M   G  P +V+ +G L+AC+  G ++ G
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 323/552 (58%), Gaps = 31/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF    D N+  +NT++  Y         + +  +M   G +PD  T    + A S+
Sbjct: 294 ARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSE 353

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L DV  G+  H   +RNG E    V N++++MY   G  + AC+VF+ M  +  V+WNS+
Sbjct: 354 LDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSL 413

Query: 216 INGFASNGK-----------PN--------------------EALTLFREMASEGVEPDG 244
           I GF  NG            P+                    EA+ LFR M SEG+  D 
Sbjct: 414 IAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADK 473

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            TMV + SAC  LGAL L +  H Y+ K  +  ++++  AL+D +++CG   +A +VF +
Sbjct: 474 VTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNK 533

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M KR+  +W+  +  +A+ G G  A+ELF EM   G  P  V FV +L A SH G+V++G
Sbjct: 534 MVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQG 593

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
           +  F+ MKD YGI P+  H+GCMVDLLGRAGL+ +A   I +M M PN VIW +LL AC 
Sbjct: 594 WHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACR 653

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           +H +  IA  A   + +L+P+ +G +VLLSN+YA   RW +V +VR  + ++   K PG 
Sbjct: 654 VHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGS 713

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +E+  ++FEF  GD SHP+   I  ML EI  +L+  GYVP   NV  D+ E+EKE  
Sbjct: 714 SSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYL 773

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           LS HSEK+AIAF L++T  G P+RV KNLR+C+DCH   KL+SK YSREI+VRD +RFH 
Sbjct: 774 LSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHF 833

Query: 605 FKDGHCSCRDYW 616
           F+ G CSC DYW
Sbjct: 834 FQQGFCSCGDYW 845



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 172/324 (53%), Gaps = 14/324 (4%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF-PMSYAH 97
           T   +KC T+ +        LKQ+H+   ++G+  +   L   +       +F  + YA 
Sbjct: 37  TGSFKKCKTMTE--------LKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQ 88

Query: 98  NIFS-HVQDPNI----FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
                 ++D  I    + ++++IRG++       A+ ++ ++   G  PD  T+PF+L A
Sbjct: 89  KALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSA 148

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +K A +  G Q H   ++ GFE  +FV+NSL+H Y   G +    +VF+ MSER++V+W
Sbjct: 149 CTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSW 208

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S+I G+A  G   EA++LF EM   G+ P+  TMV + SACA+L  L LG +  T + +
Sbjct: 209 TSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGE 268

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           + L  N  + NAL+D Y KCG I  A+++F E   +N V ++T++      G  +E L +
Sbjct: 269 LELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAV 328

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS 356
             EM   G  P  +T +  + ACS
Sbjct: 329 LGEMLKHGPRPDRITMLSAVSACS 352



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 41/385 (10%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + N+ +W ++I GYA+      AV L+ +M   GI+P++ T   ++ A +KL D
Sbjct: 196 VFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQD 255

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +++GEQ  +       E    + N+LV MY   G +  A K+F+   +++LV +N++++ 
Sbjct: 256 LQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSN 315

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +   G   E L +  EM   G  PD  TM+S  SAC+EL  ++ G+  H YV + GL   
Sbjct: 316 YVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGW 375

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-------------- 324
            NV NA+++ Y KCG    A RVF  M  +  VSW++L+ G   NG              
Sbjct: 376 DNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPD 435

Query: 325 -----------------FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG--- 364
                              KEA+ELF+ M+  G    +VT VGV  AC + G +D     
Sbjct: 436 SDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWI 495

Query: 365 FSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
             Y K+ KD +  M    H G  +VD+  R G  + A + + N ++  +   W   +GA 
Sbjct: 496 HGYIKK-KDIHFDM----HLGTALVDMFARCGDPQSAMQ-VFNKMVKRDVSAWTAAIGAM 549

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSG 448
            + G+   A      +LQ   K  G
Sbjct: 550 AMEGNGTGAIELFDEMLQQGIKPDG 574



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 2/233 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  IFS + D ++ +WNTMI    + +    A+EL+  M   GI  D  T   +  A
Sbjct: 423 MESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASA 482

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              L  + + +  H    +      + +  +LV M+A  G  + A +VF  M +RD+ AW
Sbjct: 483 CGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAW 542

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            + I   A  G    A+ LF EM  +G++PDG   V+L +A +  G +  G      +  
Sbjct: 543 TAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKD 602

Query: 273 V-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN 323
           + G++        ++D   + G++  A  +   M+ + N V W +L+    V+
Sbjct: 603 IYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           +S+L+ G +  G G +A+ +F+++   G VP   TF  VL AC+    + EGF
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/521 (43%), Positives = 323/521 (61%), Gaps = 14/521 (2%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLA------D 158
           P  F++NT IR  A    P LAV LY  M ++ +  P+ +TYP LL A ++L       +
Sbjct: 55  PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPRE 114

Query: 159 VRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSV 215
              G   H+   R G ES   F+  S++  YAA G +  A +VF+    ++RDL  WNS+
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++ + S G     L LFR+M    V  D  T++++ SAC+ LGAL  GR AH Y  +   
Sbjct: 175 LHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCR 230

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           +   N+  ALL+ Y +CG + +A  VF EM  ++  +WS ++ GLAVNG  ++AL+LF E
Sbjct: 231 NTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAE 290

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +T   VL ACSH GMVDEG  +   M  EY + P IEH+GC+VDLLGRAG
Sbjct: 291 MKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAG 350

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A   I+ +    +  +W  LL AC  H +  + ++A   +L+L+P H+G  V LSN
Sbjct: 351 QLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSN 410

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            YA   +W  VQEVR +M + R+ K PG S+VEL   V+EF  GD SHPQ++ I+AML E
Sbjct: 411 AYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDE 470

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + K L L+G+ P T+ V  DI+EE+KE  +S HSEK+A+A  L++T  G  +R+VKNLR+
Sbjct: 471 VCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRI 530

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  +K++S+VY R IVVRDR+RFHHFK+G CSC DYW
Sbjct: 531 CEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 352/580 (60%), Gaps = 15/580 (2%)

Query: 46  ITLLQVC--ASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           ++LL  C  A   ++   +H++SI+HG+     ++N  +  Y  +        +     +
Sbjct: 251 VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG------SLKDCQKV 304

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   ++ +WN++I+ Y  +  PL A+ L+ +M +S I+PD  T   L   +S+L ++
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEI 364

Query: 160 RMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           R         +R G F   + + N++V MYA  G V  A  VF  +  +D+++WN++I+G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISG 424

Query: 219 FASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +A NG  +EA+ ++  M  EG  +  +  T VS+  AC++ GAL  G + H  + K GL 
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 484

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +V V  +L D Y KCG +  A  +F ++ + N+V W+TL+     +G G++A+ LFKEM
Sbjct: 485 LDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 544

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              G  P  +TFV +L ACSH G+VDEG   F+ M+ +YGI P ++H+GCMVDL GRAG 
Sbjct: 545 LDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQ 604

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           ++ A  +I++M + P+A IW  LL AC +HG+  + +IA   L ++EP+H G +VLLSN+
Sbjct: 605 LEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNM 664

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA   +W  V E+R     + ++KTPG S +E+ N+V  F+ G+++HP  EE++  L  +
Sbjct: 665 YASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTAL 724

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            +KLK+ GYVP    V  D+E++EKE  L  HSE++A+AF L+ T   T +R+ KNLRVC
Sbjct: 725 HEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVC 784

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH   K ISK+  REI+VRD +RFHHFK+G CSC DYW
Sbjct: 785 GDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 189/364 (51%), Gaps = 11/364 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GY +S N   A+ L   +       D+ T   LL A ++
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTE 259

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D   G   HS +I++G ES +FV N L+ +YA FG +KD  KVF+ M  RDL++WNS+
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG- 274
           I  +  N +P  A+ LF+EM    ++PD  T++SL S  ++LG +   R    +  + G 
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW 379

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
             +++ + NA++  Y+K G++ +A+ VF  +  ++ +SW+T++ G A NGF  EA+E++ 
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 335 --EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
             E E G     + T+V VL ACS  G + +G     R+    G+   +     + D+ G
Sbjct: 440 IMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYG 498

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDY 450
           + G +  A       +   N+V W TL+     HGH   A +    +L   ++P H    
Sbjct: 499 KCGRLDDALSLFYQ-IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 557

Query: 451 VLLS 454
            LLS
Sbjct: 558 TLLS 561



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 177/347 (51%), Gaps = 21/347 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK-MHVSGIKPDTHTYPFLLK 151
           ++ A   F H+ + +++ WN MI GY  +      +  +S  M  SG++PD  T+P +LK
Sbjct: 102 VALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLK 161

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   + D   G + H +A++ GF   V+V  SL+H+Y  +G V +A  +F+ M  RD+ +
Sbjct: 162 ACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGS 218

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEP-DGYTMVSLFSACAELGALALGRRAHTYV 270
           WN++I+G+  +G   EALTL     S+G+   D  T+VSL SAC E G    G   H+Y 
Sbjct: 219 WNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K GL   + V+N L+D Y++ G +   Q+VF  M  R+ +SW++++    +N     A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD-----EGFSYFKRMKDEYGIMPKIEHFG 385
            LF+EM +    P  +T + +    S  G +      +GF+  K        +  I    
Sbjct: 334 LLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW-----FLEDITIGN 388

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +V +  + GLV  A   + N L   + + W T++     +G ++ A
Sbjct: 389 AVVVMYAKLGLVDSA-RAVFNWLPNKDVISWNTIISGYAQNGFASEA 434



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 142/312 (45%), Gaps = 22/312 (7%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM--GEQTHSVAIR 171
           ++R ++ SAN L   + +   + S    D HT   L +  + L   +        S AI+
Sbjct: 30  VVREFSASANALQ--DCWKNGNESKEIDDVHT---LFRYCTNLQSAKCLHARLVVSNAIQ 84

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           N     V +   LV++Y   G+V  A   F+ +  RD+ AWN +I+G+   G  +E +  
Sbjct: 85  N-----VCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRC 139

Query: 232 FRE-MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           F   M S G++PD  T  S+  AC  +     G + H    K G   +V V  +L+  Y 
Sbjct: 140 FSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYC 196

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           + G ++ A+ +F EM  R+  SW+ ++ G   +G  KEAL L   +         VT V 
Sbjct: 197 RYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVS 252

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           +L AC+  G  + G +       ++G+  ++     ++DL    G +K   +    M + 
Sbjct: 253 LLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYV- 310

Query: 411 PNAVIWRTLLGA 422
            + + W +++ A
Sbjct: 311 RDLISWNSIIKA 322


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 347/591 (58%), Gaps = 23/591 (3%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
            E  + +++  C+ + Q+       LK++H +SIRHG   +           +V+  F  
Sbjct: 235 NEVTVLNILPACLEISQL-----RSLKELHGYSIRHGFQYDE----------LVANGFVA 279

Query: 94  SYA--------HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           +YA          +F  ++   + +WN +I G A++ +P  A+ LY +M  SG+ PD  T
Sbjct: 280 AYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFT 339

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
              LL A + L  +R G++ H   +R+G E   F+  SL+ +Y   G    A  +F+ M 
Sbjct: 340 IGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGME 399

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           E+  V+WN++I+G++ NG P +AL LFR++ S+G +P    +VS+  AC++  AL LG+ 
Sbjct: 400 EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE 459

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H Y  K  L ++V V  + +D Y+K G I  ++ VF  ++ ++  SW+ ++    V+G 
Sbjct: 460 THCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGD 519

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G+E++ELF+ M   G +P   TF+G+L  CSH G+V+EG  YF  M++ +GI PK+EH+ 
Sbjct: 520 GEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYA 579

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C++D+LGRAG +  A   +  M   P++ +W +LL  C   G   I +I    LL+LEPK
Sbjct: 580 CVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPK 639

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           +  +YV LSNLYA   RW +V+ VR+ +    ++K  G S +ELG +V  F  GD   PQ
Sbjct: 640 NVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQ 699

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           ++E+     ++ KK+   GY P T  V  D++EE+K + L  HSEK+AI F L+NT  GT
Sbjct: 700 SKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGT 759

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +R+ KNLR+C DCH A K +S+V  REI++RD  RFHHFKDG CSC DYW
Sbjct: 760 TLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 166/315 (52%), Gaps = 26/315 (8%)

Query: 127 AVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
           A++++ K+   +    D  T+P ++KA +   D  +GE  H + I+ G    VFV N+L+
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPD 243
            MY  FG V  A KVF  M  R+LV+WNS+I+GF+ NG   +   +  EM    EG+ PD
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPD 133

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
             T+V++   CA    + +G R H    K+GLS++V VNN+L+D YSKCG +  AQ +F 
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVD 362
           +  ++NAVSW+T++ GL   G+  EA  LF+EM++   +   EVT + +L AC       
Sbjct: 194 KNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLE----- 248

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI------- 415
              S  + +K+ +G    I H G   D L   G V  AY     ML+    V        
Sbjct: 249 --ISQLRSLKELHGY--SIRH-GFQYDELVANGFV-AAYAKC-GMLICAERVFYSMETKT 301

Query: 416 ---WRTLLGACTIHG 427
              W  L+G C  +G
Sbjct: 302 VNSWNALIGGCAQNG 316



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 158/299 (52%), Gaps = 5/299 (1%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           +H   I+ G+ L+   +G  LI       F +  A  +F ++   N+ +WN++I G++E+
Sbjct: 53  IHGMVIKMGLLLD-VFVGNALIAMYGKFGF-VDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 122 ANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  ++  +M     G+ PD  T   +L   ++  DV+MG + H +A++ G    V 
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA-SE 238
           V NSLV MY+  G++ +A  +F+  + ++ V+WN++I G  + G   EA  LFREM   E
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            +E +  T++++  AC E+  L   +  H Y  + G   +  V N  +  Y+KCG++I A
Sbjct: 231 DIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA 290

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +RVF  M  +   SW+ L+ G A NG  ++AL L+ +M   G VP   T   +L A +H
Sbjct: 291 ERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 226 NEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           ++A+ +F ++ ++     D +T   +  AC       LG   H  V K+GL  +V V NA
Sbjct: 12  SDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNA 71

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG--GFV 342
           L+  Y K G + AA +VF  M  RN VSW++++ G + NGF K+  ++  EM  G  G +
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P   T V VL  C+    V  G      +  + G+   +     +VD+  + G + +A +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA-Q 189

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGH 428
            + +     NAV W T++G     G+
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGY 215


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 350/578 (60%), Gaps = 9/578 (1%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
            S++R C +L  V        +Q+H   ++ G   N   +   LI     L   + +A  I
Sbjct: 478  SILRTCSSLRAVDLG-----EQIHTQVLKTGFQFN-VYVSSVLIDMYAKLG-KLDHALKI 530

Query: 100  FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
            F  +++ ++ +W  MI GYA+      A+ L+ +M   GI  D   +   + A + +  +
Sbjct: 531  FRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQAL 590

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
              G+Q H+ A  +G+   + V N+LV +YA  G V+DA   F+ +  +D ++WNS+I+GF
Sbjct: 591  NQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGF 650

Query: 220  ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            A +G   EAL+LF +M+  G E + +T     SA A +  + LG++ H  + K G     
Sbjct: 651  AQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSET 710

Query: 280  NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
             V+N L+  Y+KCG I  A+R F EM ++N +SW+ ++ G + +G G +AL LF++M+  
Sbjct: 711  EVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQL 770

Query: 340  GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
            G +P  VTFVGVL ACSH G+VDEG  YF+ M++ +G++PK EH+ C+VDLLGR+GL+ +
Sbjct: 771  GVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSR 830

Query: 400  AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
            A  +++ M + P+A++ RTLL AC +H +  I E A S LL+LEPK S  YVLLSN+YA 
Sbjct: 831  ARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAV 890

Query: 460  EQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              +W   ++  R M+K+R VKK PG S +E+ N V  FF GD+ HP  ++I+  L ++ +
Sbjct: 891  TGKW-GCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNE 949

Query: 519  KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
                 GY+P+T ++  D E  +K      HSEK+AIAF L++ +  TP+ V KNLRVC D
Sbjct: 950  LAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGD 1009

Query: 579  CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            CH  IK +SK+  R IVVRD  RFHHFK G CSC+DYW
Sbjct: 1010 CHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 194/373 (52%), Gaps = 10/373 (2%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNT 113
           H ++++HA +I HG      +   ++   ++ L F   +   A  +F  +Q  +  +W  
Sbjct: 187 HCVEKIHARTITHGY-----ENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVA 241

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           M+ G ++S     AV L+ +MH SG+ P  + +  +L A +K+   ++GEQ H + ++ G
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F    +V N+LV +Y+  G+   A +VF  M +RD V++NS+I+G +  G  ++AL LF+
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           +M  + ++PD  T+ SL SAC+ +GAL +G++ H+Y  K G+S ++ +  ALLD Y KC 
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS 421

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I  A   F      N V W+ ++V   +     E+ ++F +M++ G  P + T+  +L 
Sbjct: 422 DIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILR 481

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
            CS    VD G     ++  + G    +     ++D+  + G +  A + I   L   + 
Sbjct: 482 TCSSLRAVDLGEQIHTQVL-KTGFQFNVYVSSVLIDMYAKLGKLDHALK-IFRRLKEKDV 539

Query: 414 VIWRTLLGACTIH 426
           V W  ++     H
Sbjct: 540 VSWTAMIAGYAQH 552



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 186/372 (50%), Gaps = 10/372 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++ G  L       Y+  A+V+L   +     A  +F+ +   +  ++N++I 
Sbjct: 291 EQLHGLVLKQGFSLET-----YVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLIS 345

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G ++      A+EL+ KM +  +KPD  T   LL A S +  + +G+Q HS AI+ G  S
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSS 405

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + ++ +L+ +Y     +K A + F      ++V WN ++  +      NE+  +F +M 
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQ 465

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG+EP+ +T  S+   C+ L A+ LG + HT V K G   NV V++ L+D Y+K G + 
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD 525

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A ++FR +++++ VSW+ ++ G A +    EAL LFKEM+  G     + F   + AC+
Sbjct: 526 HALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
               +++G           G    +     +V L  R G V+ AY +  + +   + + W
Sbjct: 586 GIQALNQG-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAY-FAFDKIFSKDNISW 643

Query: 417 RTLLGACTIHGH 428
            +L+      GH
Sbjct: 644 NSLISGFAQSGH 655



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 165/314 (52%), Gaps = 5/314 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG--EQTHSV 168
           WN ++  +         + L+ +M    +KPD  TY  +L+      DV     E+ H+ 
Sbjct: 137 WNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHAR 195

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
            I +G+E+ +FV N L+ +Y   G +  A KVF+ + +RD V+W ++++G + +G   EA
Sbjct: 196 TITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LF +M + GV P  Y   S+ SAC ++    +G + H  V K G S    V NAL+  
Sbjct: 256 VLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTL 315

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           YS+ G  I A++VF  M +R+ VS+++L+ GL+  G+  +ALELFK+M +    P  VT 
Sbjct: 316 YSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTV 375

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
             +L ACS  G +  G   F     + G+   I   G ++DL  +   +K A+E+  +  
Sbjct: 376 ASLLSACSSVGALLVG-KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST- 433

Query: 409 MPPNAVIWRTLLGA 422
              N V+W  +L A
Sbjct: 434 ETENVVLWNVMLVA 447



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   G++ ++ TY +LL           G + H   ++ GF + V +   L+ +Y AFG 
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +  A  VF+ M  R L  WN V++ F +       L LFR M  E V+PD  T   +   
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 254 CAELGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           C   G +      + H      G  +++ V N L+D Y K G + +A++VF  ++KR++V
Sbjct: 179 CGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW  ++ GL+ +G  +EA+ LF +M   G  P    F  VL AC+          ++K  
Sbjct: 238 SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTK-------VEFYKVG 290

Query: 372 KDEYGIMPK----IEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           +  +G++ K    +E + C  +V L  R G    A E + N ++  + V + +L+   + 
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPA-EQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 426 HGHS 429
            G+S
Sbjct: 350 QGYS 353


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/563 (41%), Positives = 333/563 (59%), Gaps = 31/563 (5%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L Q+HA    H +  +N  +   LI +  SL   + YA +IF     PN+F +N +IRG
Sbjct: 55  QLHQIHAQIFLHNL-FSNSRVVTQLISSSCSLK-SLDYALSIFRCFDHPNLFVFNALIRG 112

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            AE++    +V  +  M    I+PD  T PF+LK+++ L DV +G   H   ++ G E  
Sbjct: 113 LAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFD 172

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERD----LVAWNSVINGFASNGKPNEALTLFR 233
            FV+ SLV MY   G +    ++F+   +R+    ++ WN                    
Sbjct: 173 SFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN-------------------- 212

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
                GV P+  T+VS   AC ++GAL +G R H Y+   G   N  +  AL+D Y+KCG
Sbjct: 213 -----GVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCG 267

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I +A RVF E + ++ ++WS ++ G A++G   +AL+ F +M+  G  P EV F+ +L 
Sbjct: 268 NIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILT 327

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G VD+G ++F+ M+ +Y I P ++H+  +VDLLGRAG + +A  +IQ+M + P+ 
Sbjct: 328 ACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDF 387

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
           VIW  L  AC  H +  +AE+    LLQLEPKH G YV LSN+YA   RW +V+ VR  M
Sbjct: 388 VIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLM 447

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
               V+K PG S +E+  +V  F  GD +H + EEI   L EIT   K EGY+P T  V 
Sbjct: 448 KNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVL 507

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            +IEEEEKEDAL  HSEK+A+AF L++TAPG+ +R+VKNLRVC DCH  +K  SK+  RE
Sbjct: 508 HNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRRE 567

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I++RD  RFHHFKDG CSC DYW
Sbjct: 568 IILRDIKRFHHFKDGTCSCGDYW 590


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 336/559 (60%), Gaps = 35/559 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           M  A   F  + + +I TWN+MI GY +    L A++++SKM   S + PD  T   +L 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---------------------- 189
           A + L  + +GEQ HS  +  GF+    V N+L+ MY+                      
Sbjct: 288 ACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 190 -----------AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                        G + +A  +F+ + +RD+VAW ++I G+  +G   EA+ LFR M  E
Sbjct: 348 EGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGE 407

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
              P+ YT+ ++ S  + L +L  G++ H    K G   +V+V+NAL+  Y+K G I +A
Sbjct: 408 EQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSA 467

Query: 299 QRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            R F  +R +R+ VSW+++++ LA +G  +EALELF+ M + G  P  +T+VGV  AC+H
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V++G  YF  MKD   I+P + H+ CMVDL GRAGL+++A E+I+ M + P+ V W 
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL AC ++ +  + ++A   LL LEP++SG Y  L+NLY+   +W    ++R++M   R
Sbjct: 588 SLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK  G S +E+ ++V  F + D  HPQ  EI+  + +I  ++K  GYVP T +V  D+E
Sbjct: 648 VKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLE 707

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE KE  L +HSEK+AIAF L++T   T +R++KNLRVC DCH AIK ISK+  REI+VR
Sbjct: 708 EEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVR 767

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFHHFKDG CSCRDYW
Sbjct: 768 DTTRFHHFKDGFCSCRDYW 786



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 177/421 (42%), Gaps = 68/421 (16%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  +   F  +   +  +W TMI GY        A+ +  +M   GI+P   T   +L +
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH------------VKD---- 196
           ++    +  G++ HS  ++ G    V V NSL++MYA  G             VKD    
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 197 ---------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-V 240
                          A   FE M+ERD+V WNS+I+G+   G    AL +F +M  +  +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            PD +T+ S+ SACA L  L +G + H+++   G   +  V NAL+  YS+CG +  A+R
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 301 ---------------------------------VFREMRKRNAVSWSTLVVGLAVNGFGK 327
                                            +F  ++ R+ V+W+ ++VG   +G   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYG 395

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EA+ LF+ M      P   T   +L   S    +  G         + G +  +     +
Sbjct: 396 EAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHG-KQIHGSAVKSGEIYSVSVSNAL 454

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA-EIARSTLLQ-LEPK 445
           + +  +AG +  A      +    + V W +++ A   HGH+  A E+  + L++ L P 
Sbjct: 455 ITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514

Query: 446 H 446
           H
Sbjct: 515 H 515



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 145/313 (46%), Gaps = 65/313 (20%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F  N+++  YA  G +  +C+ F+ + +RD V+W ++I G+ + G+ ++A+ +  EM  E
Sbjct: 81  FSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMRE 140

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+EP  +T+ ++ ++ A    L  G++ H+++ K+GL  NV+V+N+LL+ Y+KCG  + A
Sbjct: 141 GIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 299 QRV-------------------------------FREMRKRNAVSWSTLVVGLAVNGFGK 327
           + V                               F +M +R+ V+W++++ G    G+  
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260

Query: 328 EALELFKEMEIGGFV-PGEVTFVGVLYACS-----------HCGMVDEGFSY-------- 367
            AL++F +M     + P   T   VL AC+           H  +V  GF          
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNAL 320

Query: 368 ------------FKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
                        +R+ ++ G    KIE F  ++D   + G + +A + I + L   + V
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEA-KNIFDSLKDRDVV 379

Query: 415 IWRTLLGACTIHG 427
            W  ++     HG
Sbjct: 380 AWTAMIVGYEQHG 392



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K GL  +V + N L++ YSK G  + A+++F EM  R A SW+T++   A  G  
Sbjct: 37  HCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDM 96

Query: 327 KEALELFKEM 336
             + E F  +
Sbjct: 97  DSSCEFFDRL 106


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/622 (38%), Positives = 361/622 (58%), Gaps = 44/622 (7%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           ST   Q   +T+   +   LL  CA+ + +  ++HA ++R GV   +  +G  L  A  +
Sbjct: 24  STGGQQHGVLTA--DRVAGLLTGCATLR-RTGELHAAAVRAGVD-GDRAVGFRLQRAYAA 79

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
            S  +     +     DP    + + I  ++     L A+ L S+M   G+ P +HT   
Sbjct: 80  -SDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSS 138

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA------------------- 189
            L A   LA   +G   H+ A +       +V  +L+ MYA                   
Sbjct: 139 SLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPH 195

Query: 190 ------------AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
                         G + DA ++F+ M  +D + WN++I+G+  +G+PNEAL LFR M  
Sbjct: 196 VVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR 255

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYV---WKVGLSDNVNVNNALLDFYSKCGI 294
            GV+PD   ++   SA A+LG    GR  H+YV    +V L  N  V  AL+D Y KCG 
Sbjct: 256 SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQL--NARVGTALIDMYCKCGS 313

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A  VF  +  ++ V W+ ++ G A++G  ++ALE+F ++   G  P ++TF+G+L A
Sbjct: 314 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNA 373

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G+VDEG  +F+ M++EY I+PKIEH+GCMVDLLGRAGL+++A+  +Q+M + P+ V
Sbjct: 374 CSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTV 433

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W +LL AC +H + A+ +     L+     +SG Y+LLSN+YA    W  V  VR  M 
Sbjct: 434 MWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMK 493

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
              ++K PG S +E+G +V+EF  GD SHP+T+EI+AML ++   +K +G+VP+TE V  
Sbjct: 494 ASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLH 553

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D++E  KE AL+ HSEK+A+AF L++TAPG  +++VKNLR CADCH  +KLISK+  R+I
Sbjct: 554 DLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKI 613

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           V RDR+RFHHF DG C+C DYW
Sbjct: 614 VFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/622 (38%), Positives = 361/622 (58%), Gaps = 44/622 (7%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           ST   Q   +T+   +   LL  CA+ + +  ++HA ++R GV   +  +G  L  A  +
Sbjct: 23  STGGQQHGVLTA--DRVAGLLTGCATLR-RTGELHAAAVRAGVD-GDRAVGFRLQRAYAA 78

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
            S  +     +     DP    + + I  ++     L A+ L S+M   G+ P +HT   
Sbjct: 79  -SDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSS 137

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA------------------- 189
            L A   LA   +G   H+ A +       +V  +L+ MYA                   
Sbjct: 138 SLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPH 194

Query: 190 ------------AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
                         G + DA ++F+ M  +D + WN++I+G+  +G+PNEAL LFR M  
Sbjct: 195 VVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR 254

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYV---WKVGLSDNVNVNNALLDFYSKCGI 294
            GV+PD   ++   SA A+LG    GR  H+YV    +V L  N  V  AL+D Y KCG 
Sbjct: 255 SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQL--NARVGTALIDMYCKCGS 312

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A  VF  +  ++ V W+ ++ G A++G  ++ALE+F ++   G  P ++TF+G+L A
Sbjct: 313 LEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNA 372

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G+VDEG  +F+ M++EY I+PKIEH+GCMVDLLGRAGL+++A+  +Q+M + P+ V
Sbjct: 373 CSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTV 432

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W +LL AC +H + A+ +     L+     +SG Y+LLSN+YA    W  V  VR  M 
Sbjct: 433 MWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMK 492

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
              ++K PG S +E+G +V+EF  GD SHP+T+EI+AML ++   +K +G+VP+TE V  
Sbjct: 493 ASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLH 552

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D++E  KE AL+ HSEK+A+AF L++TAPG  +++VKNLR CADCH  +KLISK+  R+I
Sbjct: 553 DLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKI 612

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           V RDR+RFHHF DG C+C DYW
Sbjct: 613 VFRDRNRFHHFVDGSCTCGDYW 634


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 321/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++ P++ ++N +I G++ +     AV+ + ++ VSG +  + T   L+   S 
Sbjct: 258 ARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSP 317

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +        +++G      V  +L  +Y+    +  A ++F+  SE+ + AWN++
Sbjct: 318 FGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAM 377

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A +G    A++LF+EM +    P+  T+ S+ SACA+LGAL+ G+  H  +    L
Sbjct: 378 ISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNL 437

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N+ V+ AL+D Y+KCG I  A ++F    ++N V+W+T++ G  ++G+G EAL+LF E
Sbjct: 438 EQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNE 497

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   GF P  VTF+ VLYACSH G+V EG   F  M ++Y I P  EH+ CMVD+LGRAG
Sbjct: 498 MLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAG 557

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A E+I+ M + P   +W TLLGAC IH  + +A +A   L +L+P + G YVLLSN
Sbjct: 558 QLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSN 617

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+ E+ +     VR  + K  + KTPG +L+E+      F  GDRSH QT  I+A L E
Sbjct: 618 IYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEE 677

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T K++  GY   T     D+EEEEKE   + HSEK+AIAF L+ T PGT +R++KNLRV
Sbjct: 678 LTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRV 737

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R IVVRD +RFHHFKDG CSC DYW
Sbjct: 738 CLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 181/366 (49%), Gaps = 3/366 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA  +F  + D +   WNTMI G   +     +V+++  M   G++ D+ T   +L A
Sbjct: 154 VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPA 213

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++++ +V++G     +A++ GF    +V   L+ +++    V  A  +F ++ + DLV++
Sbjct: 214 VAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSY 273

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I+GF+ NG+   A+  FRE+   G      TMV L    +  G L L      +  K
Sbjct: 274 NALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVK 333

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G     +V+ AL   YS+   I  A+++F E  ++   +W+ ++ G A +G  + A+ L
Sbjct: 334 SGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISL 393

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM    F P  VT   +L AC+  G +  G S  + +K +  +   I     ++D+  
Sbjct: 394 FQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYA 452

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           + G + +A +   ++    N V W T++    +HG+   A    + +L L  + S     
Sbjct: 453 KCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSS-VTF 510

Query: 453 LSNLYA 458
           LS LYA
Sbjct: 511 LSVLYA 516



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 177/367 (48%), Gaps = 38/367 (10%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAI 153
           +A  +F  V  P+IF +N +I+G++ S +   ++  Y+ +   + + PD  TY F   AI
Sbjct: 58  HARALFFSVPKPDIFLFNVLIKGFSFSPDAS-SISFYTHLLKNTTLSPDNFTYAF---AI 113

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           S   D  +G   H+ A+ +GF+S +FV ++LV +Y  F  V  A KVF+ M +RD V WN
Sbjct: 114 SASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWN 173

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I G   N   ++++ +F++M ++GV  D  T+ ++  A AE+  + +G        K+
Sbjct: 174 TMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKL 233

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G   +  V   L+  +SKC  +  A+ +F  +RK + VS++ L+ G + NG  + A++ F
Sbjct: 234 GFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 334 KEMEIGGFVPGEVTFVGVLYACS-----HCGMVDEGF-----------------SYFKRM 371
           +E+ + G      T VG++   S     H     +GF                 + + R+
Sbjct: 294 RELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL 353

Query: 372 KD--------EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLL 420
            +        +      +  +  M+    ++GL + A    Q M+     PN V   ++L
Sbjct: 354 NEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSIL 413

Query: 421 GACTIHG 427
            AC   G
Sbjct: 414 SACAQLG 420



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 168/420 (40%), Gaps = 70/420 (16%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL  ISK        +TH+  IRNG++  +     L       G  + A  +F  + + D
Sbjct: 11  LLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPD 70

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +  +N +I GF+ +   +        + +  + PD +T     SA  +     LG   H 
Sbjct: 71  IFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDN---LGMCLHA 127

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           +    G   N+ V +AL+D Y K   +  A++VF +M  R+ V W+T++ GL  N    +
Sbjct: 128 HAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDD 187

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGF-----------S 366
           ++++FK+M   G      T   VL A +            C  +  GF           S
Sbjct: 188 SVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLIS 247

Query: 367 YFKRMKDE------YGIM--PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            F + +D       +G++  P +  +  ++      G  + A +Y + +L+    V   T
Sbjct: 248 VFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSST 307

Query: 419 LLG-------------ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           ++G             AC I G      +   T+LQ  P  S     L+ +Y+     LN
Sbjct: 308 MVGLIPVSSPFGHLHLACCIQGFC----VKSGTILQ--PSVS---TALTTIYSR----LN 354

Query: 466 VQEVRRTMVKERVKKT--------PGHS---LVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
             ++ R +  E  +KT         G++   L E+   +F+  M     P    I ++L+
Sbjct: 355 EIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILS 414



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F    + N  TWNTMI GY        A++L+++M   G +P + T+  +L A
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516

Query: 153 ISKLADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLV 210
            S    VR G++  H++  +   E L      +V +    G ++ A +    M  E    
Sbjct: 517 CSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPA 576

Query: 211 AWNSVING 218
            W +++  
Sbjct: 577 VWGTLLGA 584


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 343/574 (59%), Gaps = 5/574 (0%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++   CA S+     + VH F ++     +  D     +  + S    +  A  +F  +
Sbjct: 300 VSVFAGCADSRLISLGRAVHCFGVK--ACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM 357

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ ++ +MI GYA       AV+L+ +M   GI PD +T   +L   ++   +  G+
Sbjct: 358 SGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGK 417

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H     N     +FV N+L+ MYA  G +++A  VF  M  +D+++WN+VI G++ N 
Sbjct: 418 RVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNC 477

Query: 224 KPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
             NEAL+LF  +  E    PD  T+  +  ACA L A   GR  H Y+ + G   + +V 
Sbjct: 478 YANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L+D Y+KCG ++ A+ +F ++  ++ VSW+ ++ G  ++GFGKEA+ LF +M   G  
Sbjct: 538 NSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P E++FV +LYACSH G+VDEG+ +F  M+ E  I P +EH+ C+VD+L R G + +AY 
Sbjct: 598 PDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYR 657

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +I+NM +PP+A IW  LL  C IH    +AE     + +LEP+++G YVL++N+YA  ++
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEK 717

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W  V+ +R+ + +  ++K PG S +E+  RV  F  GD S+P+TE+I A L  +  ++  
Sbjct: 718 WEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIE 777

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           EGY P T+    D EE EKE+AL  HSEK+A+A  ++++  G  +RV KNLRVC DCH  
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            K +SK+  REIV+RD +RFH FKDGHCSCR +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 222/409 (54%), Gaps = 7/409 (1%)

Query: 43  RKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           R   ++LQ+CA SK     K+V  F   +G  L++ +LG  L     +    +  A  +F
Sbjct: 95  RTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDS-NLGSKLALMYTNCG-DLKEASRVF 152

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V+      WN ++   A+S +   ++ L+ KM  SG++ D++T+  + K+ S L  V 
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            GEQ H   +++GF     V NSLV  Y     V  A KVF+ M+ERD+++WNS+ING+ 
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           SNG   + L++F +M   G+E D  T+VS+F+ CA+   ++LGR  H +  K   S    
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
             N LLD YSKCG + +A+ VFREM  R+ VS+++++ G A  G   EA++LF+EME  G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P   T   VL  C+   ++DEG    + +K E  +   I     ++D+  + G +++A
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK-ENDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            E + + +   + + W T++G  + + ++  A ++   LL +E + S D
Sbjct: 452 -ELVFSEMRVKDIISWNTVIGGYSKNCYANEA-LSLFNLLLVEKRFSPD 498



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 10/288 (3%)

Query: 80  KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG- 138
           K +I+   SL      A +I +   D ++   NT +R + ES N   AV+L   +HVSG 
Sbjct: 35  KDVIFNRASLRTVSDRADSITTF--DRSVTDANTQLRRFCESGNLKNAVKL---LHVSGK 89

Query: 139 --IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
             I P T      L A SK   ++ G++  +    NGF     + + L  MY   G +K+
Sbjct: 90  WDIDPRTLCSVLQLCADSK--SLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKE 147

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A +VF+ +     + WN ++N  A +G  + ++ LF++M S GVE D YT   +  + + 
Sbjct: 148 ASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           L ++  G + H Y+ K G  +  +V N+L+ FY K   + +A++VF EM +R+ +SW+++
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + G   NG  ++ L +F +M   G      T V V   C+   ++  G
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 9/187 (4%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM 93
            E  +  V+  C +L     S+  K +++H + +R+G   ++  +   L+         +
Sbjct: 498 DERTVACVLPACASL-----SAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCG-AL 550

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
             A  +F  +   ++ +W  MI GY        A+ L+++M  +GI+PD  ++  LL A 
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610

Query: 154 SKLADVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVA 211
           S    V  G +  ++       E  V     +V M A  G++  A +  E M    D   
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATI 670

Query: 212 WNSVING 218
           W +++ G
Sbjct: 671 WGALLCG 677


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 325/568 (57%), Gaps = 44/568 (7%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A   F  ++  ++F WN M+ GY        A+ ++ KM + G+KP++ T    + A
Sbjct: 162 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSA 221

Query: 153 ISKLADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAA----------FGHVKD----- 196
            + L+ +R G + H   I+    +S + V NSLV  YA           FG +K      
Sbjct: 222 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 281

Query: 197 ----------------------------ACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
                                       AC VF  +S RD+V WNS+I+  A +G+   A
Sbjct: 282 WNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNA 341

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           L L REM    VE +  TMVS   AC++L AL  G+  H ++ + GL     + N+L+D 
Sbjct: 342 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 401

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y +CG I  ++R+F  M +R+ VSW+ ++    ++GFG +A+ LF++    G  P  +TF
Sbjct: 402 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 461

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
             +L ACSH G+++EG+ YFK MK EY + P +E + CMVDLL RAG   +  E+I+ M 
Sbjct: 462 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 521

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468
             PNA +W +LLGAC IH +  +AE A   L +LEP+ SG+YVL++N+Y+   RW +  +
Sbjct: 522 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 581

Query: 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           +R  M +  V K PG S +E+  ++  F +GD SHP  E+I A +  +   +K  GYVP 
Sbjct: 582 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPD 641

Query: 529 TENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
           T  V  D++E+EKE +L  HSEKIA+AF L++T  GTP+R++KNLRVC DCH A K ISK
Sbjct: 642 TNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISK 701

Query: 589 VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V  R+I++RD  RFHHF DG CSC DYW
Sbjct: 702 VEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 209/451 (46%), Gaps = 55/451 (12%)

Query: 49  LQVCASSKHKLKQVH----AFSIRHGVPLNNPDLGKYL---IYAIVSLSFPMSYAHNIFS 101
           +++ AS   K ++++     F +   + +N  D+ ++L   +  +   +  +  A  +F 
Sbjct: 10  IEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFD 69

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            + + N+F+W  ++  Y    +    ++L+  M   G++PD   +P + KA S+L + R+
Sbjct: 70  KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 129

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G+  +   +  GFE    V+ S++ M+   G +  A + FE +  +D+  WN +++G+ S
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVN 280
            G+  +AL +FR+M  EGV+P+  T+ S  SAC  L  L  GR  H Y  KV  L  ++ 
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL--VVGLAVNGFGKEALELFKEMEI 338
           V N+L+D+Y+KC  +  A+R F  +++ + VSW+ +  V G    G GK ALE F+ M I
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHI 309

Query: 339 GGFVPGE------VTFVGVLYACSHCGMVDEGFSYFKRM--------------------- 371
              V  E      V +  ++ AC+  G         + M                     
Sbjct: 310 ACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSK 369

Query: 372 -------KDEYGIMPKIEHFGC------MVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWR 417
                  K+ +  + +     C      ++D+ GR G ++++       LMP  + V W 
Sbjct: 370 LAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD--LMPQRDLVSWN 427

Query: 418 TLLGACTIHGH--SAIAEIARSTLLQLEPKH 446
            ++    +HG    A+    +   + L+P H
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNH 458


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/525 (40%), Positives = 324/525 (61%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  + D ++ ++ +MI GYA       AV+L+ +M   GI PD +T   +L  
Sbjct: 196 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 255

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++   +  G++ H     N     +FV N+L+ MYA  G +++A  VF  M  +D+++W
Sbjct: 256 CARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 315

Query: 213 NSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           N++I G++ N   NEAL+LF  +  E    PD  T+  +  ACA L A   GR  H Y+ 
Sbjct: 316 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 375

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           + G   + +V N+L+D Y+KCG ++ A  +F ++  ++ VSW+ ++ G  ++GFGKEA+ 
Sbjct: 376 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIA 435

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF +M   G    E++FV +LYACSH G+VDEG+ +F  M+ E  I P +EH+ C+VD+L
Sbjct: 436 LFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDML 495

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            R G + +AY +I+NM +PP+A IW  LL  C IH    +AE     + +LEP+++G YV
Sbjct: 496 ARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 555

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           L++N+YA  ++W  V+ +R+ + +  ++K PG S +E+  RV  F  GD S+P+TE I A
Sbjct: 556 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 615

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L ++  ++  EGY P T+    D EE EKE+AL  HSEK+A+A  ++++  G  +RV K
Sbjct: 616 FLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTK 675

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH   K +SK+  REIV+RD +RFH FKDGHCSCR +W
Sbjct: 676 NLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 181/323 (56%), Gaps = 2/323 (0%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  V+      WN ++   A+S +   ++ L+ KM  SG++ D++T+  + K+ S L  V
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             GEQ H   +++GF     V NSLV  Y     V  A KVF+ M+ERD+++WNS+ING+
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            SNG   + L++F +M   G+E D  T+VS+F+ CA+   ++LGR  H+   K   S   
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
              N LLD YSKCG + +A+ VFREM  R+ VS+++++ G A  G   EA++LF+EME  
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P   T   VL  C+   ++DEG    + +K E  +   I     ++D+  + G +++
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 400 AYEYIQNMLMPPNAVIWRTLLGA 422
           A E + + +   + + W T++G 
Sbjct: 300 A-ELVFSEMRVKDIISWNTIIGG 321



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 204/406 (50%), Gaps = 21/406 (5%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           S+    ++   S V K  + L+    S H  +Q+H F ++ G    N  +G  L+ A   
Sbjct: 37  SSGVEMDSYTFSCVSKSFSSLR----SVHGGEQLHGFILKSGFGERNS-VGNSLV-AFYL 90

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
            +  +  A  +F  + + ++ +WN++I GY  +      + ++ +M VSGI+ D  T   
Sbjct: 91  KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 150

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +    +    + +G   HS+ ++  F       N+L+ MY+  G +  A  VF  MS+R 
Sbjct: 151 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 210

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V++ S+I G+A  G   EA+ LF EM  EG+ PD YT+ ++ + CA    L  G+R H 
Sbjct: 211 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 270

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           ++ +  L  ++ V+NAL+D Y+KCG +  A+ VF EMR ++ +SW+T++ G + N +  E
Sbjct: 271 WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE 330

Query: 329 ALELFK-EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--- 384
           AL LF   +E   F P E T   VL AC+     D+G       ++ +G + +  +F   
Sbjct: 331 ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG-------REIHGYIMRNGYFSDR 383

Query: 385 ---GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                +VD+  + G +  A+    + +   + V W  ++    +HG
Sbjct: 384 HVANSLVDMYAKCGALLLAHMLFDD-IASKDLVSWTVMIAGYGMHG 428


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/605 (37%), Positives = 355/605 (58%), Gaps = 38/605 (6%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +  +LL  C++++ +  ++HA  +R G  L++     + +    + S  + ++  +    
Sbjct: 26  RAASLLAACSTAR-RASELHAAVVRKG--LDSDRAVAFRLQRAYAASGRLDHSLTLLGRT 82

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +DP    + + I  ++     L  + L S M   G+ P  HT    L A   L+   +G 
Sbjct: 83  KDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLS---LGR 139

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMY-------------------------------AAFG 192
             H+ A +       +V  +L+ MY                               A  G
Sbjct: 140 ALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMG 199

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            + DA ++F+ +  +D + WN++I+G+  +GKPNEAL LFR M     EPD  T+V + S
Sbjct: 200 ALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLS 259

Query: 253 ACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           A A+LG +  G+  H+YV     +  NV V  AL+D Y KCG +  A  VF  +  ++ V
Sbjct: 260 AVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIV 319

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            W+ ++ G A++G  ++ALE+F ++   G  P ++TF+G+L ACSH G+V+EG S+F+ M
Sbjct: 320 VWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSM 379

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
           + EYGI PKIEH+GCMVDLLGRAGL+++A+  +Q++ + P+AV+W +LL AC +H + A+
Sbjct: 380 EHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMAL 439

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            +     L+     +SG Y+LLSN+YA   +W  V  VR  M    ++K PG S +E+  
Sbjct: 440 GQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDR 499

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
           +V+EF  GD SHP T+EI+AML ++   +K  G+VP+TE V  D++E  KE AL+ HSEK
Sbjct: 500 KVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEK 559

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+AF L+++ PG+ +++VKNLR C+DCH  +KLISK+ SR+IV RDR+RFHHF DG C+
Sbjct: 560 LAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCT 619

Query: 612 CRDYW 616
           C DYW
Sbjct: 620 CGDYW 624


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 324/526 (61%), Gaps = 1/526 (0%)

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            +  A  +F  + D ++ ++ +MI GYA       AV+L+ +M   GI PD +T   +L 
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             ++   +  G++ H     N     +FV N+L+ MYA  G +++A  VF  M  +D+++
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 212 WNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           WN++I G++ N   NEAL+LF  +  E    PD  T+  +  ACA L A   GR  H Y+
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            + G   + +V N+L+D Y+KCG ++ A  +F ++  ++ VSW+ ++ G  ++GFGKEA+
Sbjct: 526 MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI 585

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            LF +M   G    E++FV +LYACSH G+VDEG+ +F  M+ E  I P +EH+ C+VD+
Sbjct: 586 ALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 645

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           L R G + +AY +I+NM +PP+A IW  LL  C IH    +AE     + +LEP+++G Y
Sbjct: 646 LARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 705

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           VL++N+YA  ++W  V+ +R+ + +  ++K PG S +E+  RV  F  GD S+P+TE I 
Sbjct: 706 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIE 765

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
           A L ++  ++  EGY P T+    D EE EKE+AL  HSEK+A+A  ++++  G  +RV 
Sbjct: 766 AFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVT 825

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH   K +SK+  REIV+RD +RFH FKDGHCSCR +W
Sbjct: 826 KNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 207/382 (54%), Gaps = 6/382 (1%)

Query: 43  RKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           R   ++LQ+CA SK     K+V  F IR    + + +LG  L     +    +  A  +F
Sbjct: 95  RTLCSVLQLCADSKSLKDGKEVDNF-IRGNGFVIDSNLGSKLSLMYTNCG-DLKEASRVF 152

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             V+      WN ++   A+S +   ++ L+ KM  SG++ D++T+  + K+ S L  V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            GEQ H   +++GF     V NSLV  Y     V  A KVF+ M+ERD+++WNS+ING+ 
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           SNG   + L++F +M   G+E D  T+VS+F+ CA+   ++LGR  H+   K   S    
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
             N LLD YSKCG + +A+ VFREM  R+ VS+++++ G A  G   EA++LF+EME  G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P   T   VL  C+   ++DEG    + +K E  +   I     ++D+  + G +++A
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNALMDMYAKCGSMQEA 451

Query: 401 YEYIQNMLMPPNAVIWRTLLGA 422
            E + + +   + + W T++G 
Sbjct: 452 -ELVFSEMRVKDIISWNTIIGG 472



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 194/380 (51%), Gaps = 17/380 (4%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S H  +Q+H F ++ G    N  +G  L+ A    +  +  A  +F  + + ++ +WN++
Sbjct: 210 SVHGGEQLHGFILKSGFGERNS-VGNSLV-AFYLKNQRVDSARKVFDEMTERDVISWNSI 267

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I GY  +      + ++ +M VSGI+ D  T   +    +    + +G   HS+ ++  F
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
                  N+L+ MY+  G +  A  VF  MS+R +V++ S+I G+A  G   EA+ LF E
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  EG+ PD YT+ ++ + CA    L  G+R H ++ +  L  ++ V+NAL+D Y+KCG 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK-EMEIGGFVPGEVTFVGVLY 353
           +  A+ VF EMR ++ +SW+T++ G + N +  EAL LF   +E   F P E T   VL 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF------GCMVDLLGRAGLVKQAYEYIQNM 407
           AC+     D+G       ++ +G + +  +F        +VD+  + G +  A+    + 
Sbjct: 508 ACASLSAFDKG-------REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD- 559

Query: 408 LMPPNAVIWRTLLGACTIHG 427
           +   + V W  ++    +HG
Sbjct: 560 IASKDLVSWTVMIAGYGMHG 579



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 172/396 (43%), Gaps = 52/396 (13%)

Query: 67  IRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL 126
           IR GV +      KY+I+   SL        +I +   D ++   NT +R + ES N   
Sbjct: 27  IRSGVRVR-----KYVIFNRASLRTVSDCVDSITTF--DRSVTDANTQLRRFCESGNLEN 79

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AV+L        I P T      L A SK   ++ G++  +    NGF     + + L  
Sbjct: 80  AVKLLCVSGKWDIDPRTLCSVLQLCADSK--SLKDGKEVDNFIRGNGFVIDSNLGSKLSL 137

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G +K+A +VF+ +     + WN ++N  A +G  + ++ LF++M S GVE D YT
Sbjct: 138 MYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYT 197

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
              +  + + L ++  G + H ++ K G  +  +V N+L+ FY K   + +A++VF EM 
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC----------- 355
           +R+ +SW++++ G   NG  ++ L +F +M + G      T V V   C           
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 356 ------------------------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
                                   S CG +D   + F+ M D       +  +  M+   
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR-----SVVSYTSMIAGY 372

Query: 392 GRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACT 424
            R GL  +A   +E ++   + P+      +L  C 
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/503 (44%), Positives = 315/503 (62%)

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           M+ GY    +   A+EL+S +H SG K D  T     KA   L  +  G+Q H+ AI+ G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F+S + V + ++ MY   G + +A  VF  +S  D VAW S+I+G   NG  ++AL ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M    V PD YT  +L  A + + AL  GR+ H  V K+    +  V  +L+D Y+KCG
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 180

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I  A R+F++M  RN   W+ ++VGLA +G  +EA+ LFK M+  G  P  V+F+G+L 
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G+  E + Y   M ++YGI P+IEH+ C+VD LGRAGLV++A + I+ M    +A
Sbjct: 241 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            I R LLGAC I G     +   + L  LEP  S  YVLLSN+YA   RW +V + R+ M
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 360

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
            ++ VKK PG S +++ N +  F + DRSHPQ + I+  + E+ K ++ +GYVP TE V 
Sbjct: 361 KRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 420

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D+E+EEKE +L YHSEK+AIA+ L++T   T +RV+KNLRVC DCH AIK ISKV+ RE
Sbjct: 421 LDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFERE 480

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           IV+RD +RFHHF+DG CSC DYW
Sbjct: 481 IVLRDANRFHHFRDGVCSCGDYW 503



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 153/306 (50%), Gaps = 27/306 (8%)

Query: 25  SLYHSTPASQENPITSVVRK---CITLLQVCASSKHKLKQVHAFSIRHG----VPLNNPD 77
           SL H +    +    +   K   C+ LL        + KQ+HA +I+ G    + +N+  
Sbjct: 19  SLIHKSGEKSDQITLATAAKACGCLVLLD-------QGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           L  Y+          M  A  +F+++  P+   W +MI G  ++ N   A+ +Y +M  S
Sbjct: 72  LDMYIKCG------DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQS 125

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
            + PD +T+  L+KA S +  +  G Q H+  I+    S  FV  SLV MYA  G+++DA
Sbjct: 126 RVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDA 185

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            ++F+ M+ R++  WN+++ G A +G   EA+ LF+ M S G+EPD  + + + SAC+  
Sbjct: 186 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHA 245

Query: 258 GALALGRRAHTYVWKV----GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           G   L   A+ Y+  +    G+   +   + L+D   + G++  A +V   M  + + S 
Sbjct: 246 G---LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASI 302

Query: 314 STLVVG 319
           +  ++G
Sbjct: 303 NRALLG 308


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/594 (39%), Positives = 367/594 (61%), Gaps = 9/594 (1%)

Query: 26  LYHSTPASQENPITSVVRKCITLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLI 83
            YH    + + P    V   I+++   A S + L   Q+HA+++++G+  ++  +G  L+
Sbjct: 370 FYHEMRDAGQKPDLVAV---ISIIAASARSGNTLHGMQIHAYAMKNGLD-SDLQVGNSLV 425

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
                    M Y   IF  + D ++ +W T+I G+A++ +   A+EL+ ++ + GI  D 
Sbjct: 426 DMYAKFC-SMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDV 484

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
                +L A S L  +   ++ HS  IR G   LV +QN +V +Y   G+V  A ++FEL
Sbjct: 485 MMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV-LQNGIVDVYGECGNVDYAARMFEL 543

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +  +D+V+W S+I+ +  NG  NEAL LF  M   GVEPD  ++VS+ SA A L AL  G
Sbjct: 544 IEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG 603

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H ++ + G     ++ + L+D Y++CG +  ++ VF  +R ++ V W++++    ++
Sbjct: 604 KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMH 663

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G G+ A++LF+ ME     P  + FV VLYACSH G+++EG  + + MK EY + P  EH
Sbjct: 664 GCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEH 723

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           + C+VDLLGRA  +++AY++++ M + P A +W  LLGAC IH +  + EIA   LL+++
Sbjct: 724 YACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMD 783

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
           P++ G+YVL+SN+Y+ E+RW +V+ VR  M    +KK PG S +E+GN+V  F   D+SH
Sbjct: 784 PENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSH 843

Query: 504 PQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           PQ+ EI++ L++IT+KL  E GYV +T+ V  + +EEEK   L  HSE++AIA+ ++ T 
Sbjct: 844 PQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTP 903

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            G  +R+ KNLRVC DCH   KLISK + RE+V+RD +RFHHFK G CSC D W
Sbjct: 904 EGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 204/400 (51%), Gaps = 9/400 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L++C S K   + +QVHA  I      N+  L   L++        +  A  +F  + 
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVD-AEKLFDGMP 141

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
              IFTWN MI  Y  +  PL ++ELY +M VSGI  D  T+P +LKA   L D R G +
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFASNG 223
            H +AI+ G+ S+VFV NS+V MY     +  A ++F+ M E+ D+V+WNS+I+ ++SNG
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  EAL LF EM    + P+ YT V+   AC +   +  G   H  V K     NV V N
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 321

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+  Y++ G +  A  +F  M   + +SW++++ G   NG   EAL+ + EM   G  P
Sbjct: 322 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 381

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             V  + ++ A +  G    G   +   MK+  G+   ++    +VD+  +   +K   +
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYM-D 438

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG-HSAIAEIARSTLLQ 441
            I + +   + V W T++     +G HS   E+ R   L+
Sbjct: 439 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLE 478



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 205/400 (51%), Gaps = 25/400 (6%)

Query: 37  PITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLS 90
           P+ +    CI  L+ C   K +    +VH  +I+ G    V + N  +G Y      +  
Sbjct: 177 PLDACTFPCI--LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMY------TKC 228

Query: 91  FPMSYAHNIFSHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
             ++ A  +F  + +  ++ +WN+MI  Y+ +   + A+ L+ +M  + + P+T+T+   
Sbjct: 229 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAA 288

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L+A    + ++ G   H+  +++ +   VFV N+L+ MYA FG + +A  +F  M + D 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++WNS+++GF  NG  +EAL  + EM   G +PD   ++S+ +A A  G    G + H Y
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
             K GL  ++ V N+L+D Y+K   +     +F +M  ++ VSW+T++ G A NG    A
Sbjct: 409 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 468

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGM---VDEGFSYFKRMKDEYGIMPKIEHFGC 386
           LELF+E+++ G     +    +L ACS   +   V E  SY  R     G+   +   G 
Sbjct: 469 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK----GLSDLVLQNG- 523

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +VD+ G  G V  A    + ++   + V W +++ +C +H
Sbjct: 524 IVDVYGECGNVDYAARMFE-LIEFKDVVSWTSMI-SCYVH 561


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 339/558 (60%), Gaps = 3/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           ++VH   +  G+ L  P +G  L+  + +    +S A  IF  + + N+ TW  +I GYA
Sbjct: 168 QKVHMEIVEAGLELE-PRVGTSLV-GMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYA 225

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +     +A+EL   M  + + P+  T+  +L+  +  A +  G++ H   I++G+   ++
Sbjct: 226 QQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELW 285

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V NSL+ MY   G +++A K+F  +  RD+V W +++ G+A  G  +EA+ LFR M  +G
Sbjct: 286 VVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG 345

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           ++PD  T  S+ ++C+    L  G+R H  +   G + +V + +AL+  Y+KCG +  A 
Sbjct: 346 IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 300 RVFREMRKRNAVSWSTLVVGL-AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            VF +M +RN V+W+ ++ G  A +G  +EALE F +M+  G  P +VTF  VL AC+H 
Sbjct: 406 LVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHV 465

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V+EG  +F+ M  +YGI P +EH+ C VDLLGRAG +++A   I +M   P   +W  
Sbjct: 466 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGA 525

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC +H      E A   +L+L+P   G YV LS++YA   R+ + ++VR+ M K  V
Sbjct: 526 LLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDV 585

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            K PG S +E+  +V  F + D+SHP++E+I+  L ++T+++K  GYVP T  V  D++E
Sbjct: 586 VKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDE 645

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           E+KE  L  HSE++AI + L+ T PG P+R+VKNLRVC DCH A K ISKV  REI+ RD
Sbjct: 646 EQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARD 705

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHF DG CSC D+W
Sbjct: 706 AQRFHHFADGVCSCGDFW 723



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 192/389 (49%), Gaps = 19/389 (4%)

Query: 48  LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           LLQ CA   S  + ++VHA  ++ G+  N     +YL   ++S+      ++ A  +F  
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPN-----RYLENTLLSMYAKCGSLTDARRVFDS 107

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++D NI +W  MI  +      L A + Y  M ++G KPD  T+  LL A +    +++G
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLG 167

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           ++ H   +  G E    V  SLV MYA  G +  A  +F+ + E+++V W  +I G+A  
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ + AL L   M    V P+  T  S+   C    AL  G++ H Y+ + G    + V 
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L+  Y KCG +  A+++F ++  R+ V+W+ +V G A  GF  EA+ LF+ M+  G  
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMVDLLGRAGLVKQ 399
           P ++TF  VL +CS    + EG    KR+  +    G    +     +V +  + G +  
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEG----KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDD 403

Query: 400 AYEYIQNMLMPPNAVIWRTLL-GACTIHG 427
           A   + N +   N V W  ++ G C  HG
Sbjct: 404 A-SLVFNQMSERNVVAWTAIITGCCAQHG 431



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 128/238 (53%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A+ + + M + G +  +  +  LL+  ++L  +  G + H+  +++G +   +++N+L+ 
Sbjct: 31  ALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLS 90

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MYA  G + DA +VF+ + +R++V+W ++I  F +  K  EA   +  M   G +PD  T
Sbjct: 91  MYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVT 150

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            VSL +A      L LG++ H  + + GL     V  +L+  Y+KCG I  A+ +F  + 
Sbjct: 151 FVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLP 210

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           ++N V+W+ L+ G A  G    ALEL + M+     P ++TF  +L  C+    ++ G
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 9/245 (3%)

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           KV  L + RD       ++     G+  EAL +   M  +G          L   CA L 
Sbjct: 9   KVETLANSRD-------VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLR 61

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           +L  GR  H  + K G+  N  + N LL  Y+KCG +  A+RVF  +R RN VSW+ ++ 
Sbjct: 62  SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIE 121

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
                    EA + ++ M++ G  P +VTFV +L A ++  ++  G      +  E G+ 
Sbjct: 122 AFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIV-EAGLE 180

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
            +      +V +  + G + +A   I + L   N V W  L+      G   +A     T
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKA-RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLET 239

Query: 439 LLQLE 443
           + Q E
Sbjct: 240 MQQAE 244


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/521 (42%), Positives = 323/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++  WNTMI G  +S     A  ++ +M    + PD  TY  +L A ++
Sbjct: 300 AREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACAR 359

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G++ H+ A+++G  S V   N+L++MY+  G +KDA +VF+ M +RD+V+W ++
Sbjct: 360 PGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTAL 419

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+A  G+  E+ + F++M  +GVE +  T + +  AC+   AL  G+  H  V K G+
Sbjct: 420 VGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGI 479

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V NAL+  Y KCG +  A RV   M  R+ V+W+TL+ GLA NG G EAL+ F+ 
Sbjct: 480 FADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEV 539

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P   TFV V+ AC    +V+EG   F  M+ +YGI+P  +H+ CMVD+L RAG
Sbjct: 540 MKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAG 599

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I  M   P+A +W  LL AC  HG+  I E A    L+LEP+++G YV LS 
Sbjct: 600 HLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSF 659

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W +V ++R+ M +  VKK PG S +E+   V  F  GD+SHP+TEEI++ L  
Sbjct: 660 IYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEA 719

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +TK++K  GYVP T  V  D+++E KE A+ +HSEK+AIA+ L++T P TP+RV KNLRV
Sbjct: 720 LTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRV 779

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+ RD  RFHHFK+G CSC DYW
Sbjct: 780 CTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 229/493 (46%), Gaps = 38/493 (7%)

Query: 46  ITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++L  C+S  + +  ++VH   +  G+  NN  +G  LI ++ +    +  A  +F  +
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLA-NNATVGNALI-SMYAKCGSVRDARRVFDAM 206

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              +  +W T+   YAES     +++ Y  M   G++P   TY  +L A   LA +  G+
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H+  + +   S V V  +L  MY   G VKDA +VFE +  RD++AWN++I G   +G
Sbjct: 267 QIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSG 326

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  EA  +F  M  E V PD  T +++ SACA  G LA G+  H    K GL  +V   N
Sbjct: 327 QLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGN 386

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL++ YSK G +  A++VF  M KR+ VSW+ LV G A  G   E+   FK+M   G   
Sbjct: 387 ALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEA 446

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMVDLLGRAGLVKQA 400
            ++T++ VL ACS+         + K +  E    GI   +     ++ +  + G V+ A
Sbjct: 447 NKITYMCVLKACSN----PVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDA 502

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
               + M    + V W TL+G    +G    A      L + E   S            E
Sbjct: 503 IRVSEGM-STRDVVTWNTLIGGLAQNGRGLEA------LQKFEVMKS------------E 543

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
           +   N       M   RV+     +LVE G R F     D     TE+ +A + +I   L
Sbjct: 544 EMRPNATTFVNVMSACRVR-----NLVEEGRRQFASMRKDYGIVPTEKHYACMVDI---L 595

Query: 521 KLEGYVPRTENVF 533
              G++   E+V 
Sbjct: 596 ARAGHLGEAEDVI 608



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 192/384 (50%), Gaps = 16/384 (4%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIF 100
           + LLQ C  +K     KQVH   +R G+  N      Y+I  ++ L      ++ A  +F
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPN-----VYIINTLLKLYVHCGSVNEARRLF 102

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
               + ++ +WN MI GYA       A  L++ M   G++PD  T+  +L A S  A + 
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G + H   +  G  +   V N+L+ MYA  G V+DA +VF+ M+ RD V+W ++   +A
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +G   E+L  +  M  EGV P   T +++ SAC  L AL  G++ H  + +     +V 
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V+ AL   Y KCG +  A+ VF  +  R+ ++W+T++ GL  +G  +EA  +F  M    
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
             P  VT++ +L AC+  G +  G     R +KD  G++  +     ++++  +AG +K 
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GLVSDVRFGNALINMYSKAGSMKD 400

Query: 400 AYEYIQNMLMPPNAVI-WRTLLGA 422
           A +      MP   V+ W  L+G 
Sbjct: 401 ARQVFDR--MPKRDVVSWTALVGG 422



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 162/302 (53%), Gaps = 16/302 (5%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           +H  G + D++ Y  LL++  K  D+ +G+Q H   +R G +  V++ N+L+ +Y   G 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V +A ++F+  S + +V+WN +I+G+A  G   EA  LF  M  EG+EPD +T VS+ SA
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C+   AL  GR  H  V + GL++N  V NAL+  Y+KCG +  A+RVF  M  R+ VSW
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           +TL    A +G+ +E+L+ +  M   G  P  +T++ VL AC     +++G       K 
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------KQ 267

Query: 374 EYGIMPKIEHFG------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIH 426
            +  + + EH         +  +  + G VK A E  +   +P   VI W T++G     
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFE--CLPNRDVIAWNTMIGGLVDS 325

Query: 427 GH 428
           G 
Sbjct: 326 GQ 327


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/519 (40%), Positives = 325/519 (62%), Gaps = 2/519 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +  P++ ++N MI GY  +     AV L+ ++  SG + ++ T   L+        
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +++     +++++ G      V  +L  +Y     V+ A ++F+   E+ L +WN++I+G
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  NG  + A++LF+EM  + + P+  T+ S+ SACA+LGAL++G+  H  +    L  N
Sbjct: 391 YTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESN 449

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V+ AL+D Y+KCG I+ A+++F  M  +N V+W+ ++ G  ++G GKEAL+LF EM  
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  VTF+ +LYACSH G+V EG   F  M + YG  P  EH+ CMVD+LGRAG + 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            A E+I+ M + P   +W  LLGAC IH ++ +A +A   L QL+P++ G YVLLSN+Y+
Sbjct: 570 NALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYS 629

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
            ++ +     VR+ + K ++ KTPG +L+E+ ++ + F  GDRSHPQ   I  ML ++T 
Sbjct: 630 TDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTG 689

Query: 519 KLKLEGYVPRT-ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
           K++  GY   T      D+E+EEKE  ++ HSEK+AIAF L++T PGT +R++KNLRVC 
Sbjct: 690 KMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCL 749

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A K ISK+  R IVVRD +RFHHFK+G CSC DYW
Sbjct: 750 DCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 235/484 (48%), Gaps = 48/484 (9%)

Query: 36  NPITSVVRK---CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           N  TS +R     +TLL   A++  +L Q+ A  I HG+  +   + K L +    L   
Sbjct: 5   NTATSAIRGQRFFLTLLN-NATTLSQLLQIQAQLILHGIHYDLSSITK-LTHKFFDLG-A 61

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH-VSGIKPDTHTYPFLLK 151
           +++   +F+ V  P++F +N +IRG++++  P  ++ LY+ +   + ++PD  TY F + 
Sbjct: 62  VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAIS 121

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A S+L D R+G   H+ +I +G  S +FV +++V +Y  F   + A KVF++M ERD V 
Sbjct: 122 AASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+GF+ N    +++ +F +M   G+  D  T+ ++ +A AEL    LG        
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLAS 241

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL  +V V   L+  YSKCG     + +F ++ + + +S++ ++ G   N   + A+ 
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 332 LFKEM----------EIGGFVPGEVTF---------------VGVLYACS--------HC 358
           LF+E+           + G +P  + F               +G++   S        +C
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYC 361

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIW 416
            + +  F+  +++ DE      +  +  M+    + GL  +A    Q M+  + PN V  
Sbjct: 362 RLNEVQFA--RQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTV 418

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV--LLSNLYAYEQRWLNVQEVRRTMV 474
            ++L AC   G  +I +     L++ E   S  YV   L ++YA     +  +++   MV
Sbjct: 419 TSILSACAQLGALSIGKWVHG-LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 475 KERV 478
            + V
Sbjct: 478 DKNV 481



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 191/400 (47%), Gaps = 12/400 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGY 118
           +HA SI  GV  N      ++  AIV L F  +    A  +F  + + +   WNTMI G+
Sbjct: 135 LHAHSIVDGVASN-----LFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           + ++    ++ ++  M   G+  D+ T   +L A+++L + R+G     +A + G  S V
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V   L+ +Y+  G       +F+ + + DL+++N++I+G+  N +   A+TLFRE+ + 
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G   +  T+V L         L L R       K+G+    +V+ AL   Y +   +  A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +++F E  +++  SW+ ++ G   NG    A+ LF+EM +    P  VT   +L AC+  
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQL 428

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G +  G      +K E  +   +     +VD+  + G + +A +   ++++  N V W  
Sbjct: 429 GALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNA 486

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           ++    +HGH   A      +LQ     +G    LS LYA
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTG-VTFLSILYA 525



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N+ TWN MI GY    +   A++L+ +M  SGI P   T+  +L A S 
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528

Query: 156 LADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
              V  G +  HS+A   GF+ +      +V +    G + +A +  E M
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/548 (40%), Positives = 342/548 (62%), Gaps = 7/548 (1%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           +P L   LI     L   +  A  +F   ++  I+ WN + R  A        ++LY +M
Sbjct: 112 DPFLATKLINMYYELG-SIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQM 170

Query: 135 HVSGIKPDTHTYPFLLKA--ISKLA--DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +  GI  D  TY F+LKA  +S+L+   ++ G++ H+  +R+G+E+ + V  +L+ +YA 
Sbjct: 171 NWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAK 230

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMV 248
           FG V  A  VF  M  ++ V+W+++I  FA N  P +AL LF+ M  E  +  P+  TMV
Sbjct: 231 FGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMV 290

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           ++  ACA L AL  G+  H Y+ + GL   + V NAL+  Y +CG I+  QRVF  M+ R
Sbjct: 291 NVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNR 350

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW++L+    ++GFGK+A+++F+ M   G  P  ++F+ VL ACSH G+V+EG   F
Sbjct: 351 DVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILF 410

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M  +Y I P +EH+ CMVDLLGRA  + +A + I++M   P   +W +LLG+C IH +
Sbjct: 411 ESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCN 470

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             +AE A + L +LEP+++G+YVLL+++YA  + W   + V + +    ++K PG S +E
Sbjct: 471 VELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIE 530

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           +  +V+ F   D  +PQ EEIHA+L +++ ++K +GYVP+T  V  D++EEEKE  +  H
Sbjct: 531 VKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGH 590

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+AF L+NT  G  +R+ KNLR+C DCH   K ISK  +REI+VRD +RFHHFKDG
Sbjct: 591 SEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDG 650

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 651 VCSCGDYW 658



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 158/355 (44%), Gaps = 27/355 (7%)

Query: 87  VSLSFPMSY-----AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           VS   P+S+     + N+ + ++  N    N +I+   +  N   A+ L          P
Sbjct: 25  VSSRVPVSFVSLNPSANLMNDIKGNN----NQLIQSLCKGGNLKQAIHLL----CCEPNP 76

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
              T+  L+ + ++   +  G   H   + +GF+   F+   L++MY   G +  A KVF
Sbjct: 77  TQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVF 136

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA----EL 257
           +   ER +  WN++    A  G   E L L+ +M   G+  D +T   +  AC      +
Sbjct: 137 DETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSV 196

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
             L  G+  H ++ + G   N++V   LLD Y+K G +  A  VF  M  +N VSWS ++
Sbjct: 197 SPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMI 256

Query: 318 VGLAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMK 372
              A N    +ALELF+ M  E    VP  VT V VL AC+    +++G     Y  R +
Sbjct: 257 ACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR-R 315

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
               I+P +     ++ + GR G +        NM    + V W +L+    +HG
Sbjct: 316 GLDSILPVL---NALITMYGRCGEILMGQRVFDNM-KNRDVVSWNSLISIYGMHG 366



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAH 97
           T V++ C+ + ++  S   K K++HA  +RHG   N   +   L +YA       +SYA+
Sbjct: 183 TFVLKACV-VSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFG---SVSYAN 238

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK--PDTHTYPFLLKAISK 155
           ++F  +   N  +W+ MI  +A++  P+ A+EL+  M +      P++ T   +L+A + 
Sbjct: 239 SVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAG 298

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G+  H   +R G +S++ V N+L+ MY   G +    +VF+ M  RD+V+WNS+
Sbjct: 299 LAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSL 358

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           I+ +  +G   +A+ +F  M  +G  P   + +++  AC+  G +  G+
Sbjct: 359 ISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGK 407


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/519 (40%), Positives = 325/519 (62%), Gaps = 2/519 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +  P++ ++N MI GY  +     AV L+ ++  SG + ++ T   L+        
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +++     +++++ G      V  +L  +Y     V+ A ++F+   E+ L +WN++I+G
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  NG  + A++LF+EM  + + P+  T+ S+ SACA+LGAL++G+  H  +    L  N
Sbjct: 391 YTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESN 449

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V+ AL+D Y+KCG I+ A+++F  M  +N V+W+ ++ G  ++G GKEAL+LF EM  
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  VTF+ +LYACSH G+V EG   F  M + YG  P  EH+ CMVD+LGRAG + 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            A E+I+ M + P   +W  LLGAC IH ++ +A +A   L QL+P++ G YVLLSN+Y+
Sbjct: 570 NALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYS 629

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
            ++ +     VR+ + K ++ KTPG +L+E+ ++ + F  GDRSHPQ   I  ML ++T 
Sbjct: 630 TDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTG 689

Query: 519 KLKLEGYVPRT-ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
           K++  GY   T      D+E+EEKE  ++ HSEK+AIAF L++T PGT +R++KNLRVC 
Sbjct: 690 KMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCL 749

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A K ISK+  R IVVRD +RFHHFK+G CSC DYW
Sbjct: 750 DCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 235/484 (48%), Gaps = 48/484 (9%)

Query: 36  NPITSVVRK---CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           N  TS +R     +TLL   A++  +L Q+ A  I HG+  +   + K L +    L   
Sbjct: 5   NTATSAIRGQRFFLTLLN-NATTLSQLLQIQAQLILHGIHYDLSSITK-LTHKFFDLG-A 61

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLK 151
           +++   +F+ V  P++F +N +IRG++++  P  ++ LY+ +   + ++PD  TY F + 
Sbjct: 62  VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAIS 121

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A S+L D R+G   H+ +I +G  S +FV +++V +Y  F   + A KVF++M ERD V 
Sbjct: 122 AASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+GF+ N    +++ +F +M   G+  D  T+ ++ +A AEL    LG        
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLAS 241

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL  +V V   L+  YSKCG     + +F ++ + + +S++ ++ G   N   + A+ 
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 332 LFKEM----------EIGGFVPGEVTF---------------VGVLYACS--------HC 358
           LF+E+           + G +P  + F               +G++   S        +C
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYC 361

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIW 416
            + +  F+  +++ DE      +  +  M+    + GL  +A    Q M+  + PN V  
Sbjct: 362 RLNEVQFA--RQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTV 418

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV--LLSNLYAYEQRWLNVQEVRRTMV 474
            ++L AC   G  +I +     L++ E   S  YV   L ++YA     +  +++   MV
Sbjct: 419 TSILSACAQLGALSIGKWVHG-LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 475 KERV 478
            + V
Sbjct: 478 DKNV 481



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 191/400 (47%), Gaps = 12/400 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGY 118
           +HA SI  GV  N      ++  AIV L F  +    A  +F  + + +   WNTMI G+
Sbjct: 135 LHAHSIVDGVASN-----LFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           + ++    ++ ++  M   G+  D+ T   +L A+++L + R+G     +A + G  S V
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V   L+ +Y+  G       +F+ + + DL+++N++I+G+  N +   A+TLFRE+ + 
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G   +  T+V L         L L R       K+G+    +V+ AL   Y +   +  A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +++F E  +++  SW+ ++ G   NG    A+ LF+EM +    P  VT   +L AC+  
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQL 428

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G +  G      +K E  +   +     +VD+  + G + +A +   ++++  N V W  
Sbjct: 429 GALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNA 486

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           ++    +HGH   A      +LQ     +G    LS LYA
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTG-VTFLSILYA 525



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N+ TWN MI GY    +   A++L+ +M  SGI P   T+  +L A S 
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528

Query: 156 LADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
              V  G +  HS+A   GF+ +      +V +    G + +A +  E M
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/608 (40%), Positives = 357/608 (58%), Gaps = 40/608 (6%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           K  +L+ +C  S +++KQ HA ++     +  P +    +  +   S  ++YAH +F  +
Sbjct: 181 KLSSLIDLC-KSINQIKQTHA-NLITTAQITLPVIANKFLKNVALAS--LTYAHKLFDQI 236

Query: 104 QDPNIFTWNTMIRGYAESANPLL-AVELY-SKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
             P++F +NTMI+ ++ S +  L ++ ++ S +  SG  P+ +++ F   A      VR 
Sbjct: 237 PQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVRE 296

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL------------------ 203
           GEQ  + A++ G +  VFV N+L+ M+  +G V+DA  VF+                   
Sbjct: 297 GEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVG 356

Query: 204 -------------MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
                        M ERD+V+W+++I G+   G   EAL  F +M    V+P+ YTMVS 
Sbjct: 357 SGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSA 416

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRN 309
            +AC+ L AL  G+  H Y+ +  +  N  +  +L+D Y+KCG I +A  VF E + KR 
Sbjct: 417 LAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRK 476

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
              W+ ++ G A++G  +EA+ +F++M++    P +VTF+ +L ACSH  MV EG SYF+
Sbjct: 477 VWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFE 536

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  +YGI P+IEH+GCMVDLL R+G +K + E I +M M P+  IW  LL AC I+   
Sbjct: 537 LMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDM 596

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR-RTMVKERVKKTPGHSLVE 488
                    + +++P H G  VLL N+Y+   RW   + VR +  +    KK PG S +E
Sbjct: 597 ERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIE 656

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSY 547
           L     EF +GDRSHPQ+ EI++ L E+  KLK+ GYVP    V  D ++EE KE ALS 
Sbjct: 657 LNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSV 716

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF L+NTAPGTP+R+VKNLRVC DCH A K ISKVY R I+VRDR R+HHFKD
Sbjct: 717 HSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKD 776

Query: 608 GHCSCRDY 615
           G CSC+DY
Sbjct: 777 GICSCKDY 784


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 368/614 (59%), Gaps = 41/614 (6%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS-LS 90
           A   NP+ SV+ KC +L +        L+Q+HA  I+  +  +   + + + +  +S +S
Sbjct: 3   AISTNPVVSVLDKCKSLCE--------LRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVS 54

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-----HVSGIKPDTHT 145
             + YA ++FS +Q PN F +  +I+G+++++NP+ ++ LY++M     + SG++    +
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FS 111

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
            P +LKA  KL     G Q H   ++       FV NS+V MY  FG ++ A +VF+ M 
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLF-------------------REMASEGVEPDGYT 246
            RD+V+WNS+I G+   G+   A  LF                   +EM S G+ PDG  
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPA 231

Query: 247 MVSLFSACAELGALALGRRAHTYVW--KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           +VS+ SA A+LG +  G+  H YV   K+ LS    + +AL+D YSKCG I  A  VFR 
Sbjct: 232 IVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGF-IGSALIDMYSKCGYIENAYHVFRS 290

Query: 305 M-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           +  +RN   W++++ GLA++G  +EAL++F EME     P E+TF+G+L  CSH G+V+E
Sbjct: 291 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 350

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           G  YF+ M ++Y I+P+I+H+GCM+DL GRAG ++ A   IQNM    + + W+ +L A 
Sbjct: 351 GQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSAS 410

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
             HGH  I + A    ++L P  S  YVLLSN+YA   RW +V ++R  M +  VKK  G
Sbjct: 411 MKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAG 470

Query: 484 HSLVELGNRVFEFFMG-DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
            S + +  +V EF +G +     + ++ A +AE+  +LKL+GY P    V  DIE+E KE
Sbjct: 471 CSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKE 530

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
             L+ HSEK+AIAF L++     P+ +VKNLRVC DCH  +KL+SKVY+R+I++RD++RF
Sbjct: 531 SLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRF 590

Query: 603 HHFKDGHCSCRDYW 616
           HHF++G CSC +YW
Sbjct: 591 HHFENGCCSCNEYW 604


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 356/578 (61%), Gaps = 15/578 (2%)

Query: 47  TLLQVCA--SSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           ++L VCA          +H + I+HG+     ++N  +  Y  +        +  A  +F
Sbjct: 278 SILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFG------NLGDAQKVF 331

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             +   ++ +WN++I  Y ++ +P+ A   + KM ++G++PD  T   L    ++  D +
Sbjct: 332 QQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYK 391

Query: 161 MGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
                H   +R G+    V + N+++ MYA  G +  A KVF L+  +D+V+WN++I+G+
Sbjct: 392 NSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGY 451

Query: 220 ASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
             NG  +EA+ ++R M     ++ +  T VS+ +A A +GAL  G R H ++ K  L  +
Sbjct: 452 TQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLD 511

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V   L+D Y KCG ++ A  +F ++ + ++V W+ ++    ++G G++AL+LF+EM+ 
Sbjct: 512 VFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQD 571

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  VTF+ +L ACSH G+VDEG  +F  M+ EYGI P ++H+GCMVDLLGRAG ++
Sbjct: 572 EGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLLGRAGFLE 630

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            AY++I++M + P+A IW  LLGAC IHG+  + + A   L +++ ++ G YVLLSN+YA
Sbjct: 631 MAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYA 690

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              +W  V +VR    +  +KKTPG S +E+  RV  F+ G++SHP+ +EI+A L  +T 
Sbjct: 691 NVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTA 750

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K  GY+P    V  D+EE+EKE  L+ HSE++AIAF +++T P + +R+ KNLRVC D
Sbjct: 751 KMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGD 810

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K IS++  REIVVRD  RFHHFK+G CSC DYW
Sbjct: 811 CHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 175/336 (52%), Gaps = 5/336 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE-LYSKMHVSGIKPDTHTYPFLLK 151
           +S +   F  +Q  +++TWN+MI  Y  + +   A++  Y  + V+  + D +T+P +LK
Sbjct: 124 VSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLK 183

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D   G + H    + GF+  VFV  SL+HMY+ FG V  A  +F+ M  RD+ +
Sbjct: 184 ACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS 240

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+G   NG   +AL +  EM  EG+  D  T+ S+   CA+LG ++     H YV 
Sbjct: 241 WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI 300

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL   + V+NAL++ Y+K G +  AQ+VF++M  R+ VSW++++     N     A  
Sbjct: 301 KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARG 360

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F +M++ G  P  +T V +    +         S    +     +M  +     ++D+ 
Sbjct: 361 FFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            + G++  A++ + N++   + V W TL+   T +G
Sbjct: 421 AKLGVIDSAHK-VFNLIPVKDVVSWNTLISGYTQNG 455



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           + ++ H++ + +G     F+   LV++YA+ G V  +   F+ +  +D+  WNS+I+ + 
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 221 SNGKPNEALTLFRE-MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            NG   EA+  F + +     + D YT   +  AC     L  GR+ H +V+K+G   +V
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDV 207

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  +L+  YS+ G +  A+ +F +M  R+  SW+ ++ GL  NG   +AL++  EM + 
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G     VT   +L  C+  G +    +       ++G+  ++     ++++  + G +  
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTA-TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 400 AYEYIQNMLMPPNAVIWRTLLGA 422
           A +  Q M +  + V W +++ A
Sbjct: 327 AQKVFQQMFL-RDVVSWNSIIAA 348


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/436 (49%), Positives = 290/436 (66%), Gaps = 1/436 (0%)

Query: 182 NSLVHMYAAFGHVKDACKVFELM-SERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
           N+++  Y     +  A ++F LM S R+ V WN++I+ +   G+   A+++F++M SE V
Sbjct: 142 NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P   TMVSL SACA LGAL +G   H Y+    L  +V + NAL+D Y KCG + AA  
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAID 261

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + ++N   W++++VGL +NG G+EA+  F  ME  G  P  VTFVG+L  CSH G+
Sbjct: 262 VFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGL 321

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +  G  YF  M   YG+ P +EH+GCMVDLLGRAG +K+A E I+ M M PN+++  +LL
Sbjct: 322 LSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLL 381

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
            AC IH  + + E     LL+L+P   G+YV LSNLYA   RW +V   R+ M+K  V K
Sbjct: 382 RACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHK 441

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
           TPG S +E+ N V EF  GD SHPQ  +I+A L EI K+LK +G+VP T NV  DIEEEE
Sbjct: 442 TPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEE 501

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE A+ YHSE+IA+AF L++T PG  +RVVKNLR C+DCH A+KLIS  + REI+VRDR 
Sbjct: 502 KEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRK 561

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHF++G CSC DYW
Sbjct: 562 RFHHFRNGSCSCNDYW 577



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 3/251 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  TWNTMI  Y +      A+ ++ +M    +KP   T   LL A + L  + MGE  H
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
                   +  V + N+L+ MY   G ++ A  VF  +S +++  WNS+I G   NG+  
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 288

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNAL 285
           EA+  F  M  EG++PDG T V + S C+  G L+ G+R  + +  V GL   V     +
Sbjct: 289 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 348

Query: 286 LDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKE-MEIGGFVP 343
           +D   + G +  A  + R M  K N++   +L+    ++   K   ++ ++ +E+     
Sbjct: 349 VDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDG 408

Query: 344 GEVTFVGVLYA 354
           G   F+  LYA
Sbjct: 409 GNYVFLSNLYA 419



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 21/295 (7%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P   ++  +L++ +   + ++GE  H   ++ GFE  + +Q  L+  YA  G +K A 
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           +VF  M  RD+VA N++I+  + +G   EA  LF  M     E +  +  S+ +   +LG
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITCYCKLG 121

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
            +   R     ++      +V   NA++D Y K   ++AAQ +F  M   RN+V+W+T++
Sbjct: 122 DINSAR----LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMI 177

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD-----EGFSYFKRMK 372
                 G    A+ +F++M+     P EVT V +L AC+H G +D      G+   KR+K
Sbjct: 178 SAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK 237

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            +      +     ++D+  + G ++ A +     L   N   W +++    ++G
Sbjct: 238 ID------VVLGNALIDMYCKCGALEAAIDVFHG-LSRKNIFCWNSIIVGLGMNG 285



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M    V P   +   +  +CA  G   LG   H  + K+G   ++ +   LLDFY+K G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           +  A+RVF  M +R+ V+ + ++  L+ +G+ +EA  LF  M
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM 102



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   NIF WN++I G   +     A+  +  M   GIKPD  T+  +L   S 
Sbjct: 259 AIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSH 318

Query: 156 LADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
              +  G++  S  +   G E  V     +V +    G++K+A ++   M
Sbjct: 319 SGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 368


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 323/527 (61%), Gaps = 5/527 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + +P++  +N +I GY+ +     +VEL+ ++  SG +P++ T   ++  
Sbjct: 263 MDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPV 322

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S      +    H+  ++   ++   V  +L  +Y     ++ A  +F+ M E+ + +W
Sbjct: 323 YSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESW 382

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I+G+A NG    A+ LF+ M    V+P+  T+ S  SACA LGAL+LG+  H  + K
Sbjct: 383 NAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISK 442

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  NV V  AL+D Y+KCG I  A+ +F  M  +N VSW+ ++ G  ++G G EAL+L
Sbjct: 443 EKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKL 502

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           +K+M     +P   TF+ V+YACSH G+VDEG   F+ M +EY I P IEH  CMVDLLG
Sbjct: 503 YKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLG 562

Query: 393 RAGLVKQAYEYIQNMLMPPNAV---IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           RAG + +A E I     P +A+   +W  LLGAC +H +S +A++A   L +L+ +++G 
Sbjct: 563 RAGKLNEALELISE--FPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGY 620

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSNLY  ++ +     VR+     ++ KTPG +L+E+G+R   F  GD  HPQ+E I
Sbjct: 621 YVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAI 680

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           ++ L  +T K+   GY P TE    D+EEEEKE  +  HSEK+AIAF L++T PGT +R+
Sbjct: 681 YSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRI 740

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLRVC DCH A K ISKV  R IVVRD SRFHHF+DG CSC DYW
Sbjct: 741 IKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 200/432 (46%), Gaps = 23/432 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIR 116
           + +H  S+  G   +      ++  A+  L F +S    A  +F  V  P+   WNT++ 
Sbjct: 134 RTLHGLSVAAGYAADT-----FVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 117 GYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           G   S     A+E + +M  +G ++PD+ T    L+A ++ + + MG   H   ++ G  
Sbjct: 189 GLPGSE----ALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLA 244

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
               V   L+ +Y+  G +  A  +F+ M   DLVA+N++I+G++ NG    ++ LF+E+
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            + G  P+  T+V++    +  G   L R  H +V K  L  +  V+ AL   Y +   +
Sbjct: 305 TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
            +A+ +F  M ++   SW+ ++ G A NG  + A+ LF+ M+     P  +T    L AC
Sbjct: 365 ESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC 424

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           +H G +  G  +  R+  +  +   +     ++D+  + G + +A      M    N V 
Sbjct: 425 AHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM-DNKNVVS 482

Query: 416 WRTLLGACTIHGHSAIAEIARSTLL--QLEPKHSGDYVLLSNLYAYEQRWL--NVQEVRR 471
           W  ++    +HG  A A      +L  ++ P  S     LS +YA     L    Q+V R
Sbjct: 483 WNAMISGYGLHGQGAEALKLYKDMLDARILPTSS---TFLSVIYACSHGGLVDEGQKVFR 539

Query: 472 TMVKERVKKTPG 483
            M  E  + TPG
Sbjct: 540 VMTNE-YRITPG 550



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 183/421 (43%), Gaps = 54/421 (12%)

Query: 42  VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +R+    L   +S+   L Q+ A S+  G    +P     L+    SL  P S+   +F 
Sbjct: 19  LRRSYLRLVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLRLFR 78

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---- 157
               P+ F  N ++R       P L      + H+    PD+ ++ F   ++S       
Sbjct: 79  AFPCPDRFLRNALLRSL-----PSL------RPHLLFPSPDSFSFAFAATSLSSSCSSRG 127

Query: 158 -DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            D       H +++  G+ +  FV ++L  +Y       DA KVF+ +   D + WN+++
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 217 NGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            G       +EAL  F  M   G V PD  T+ S   A AE   +A+GR  H Y  K GL
Sbjct: 188 AGLPG----SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGL 243

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           +++ +V   L+  YSKCG + +AQ +F  M   + V+++ L+ G +VNG  + ++ELFKE
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 336 MEIGGFVPGEVTFVGV-----------LYACSHCGMVDEGF-----------SYFKRMKD 373
           +   G+ P   T V V           L  C H  +V               + + R+ D
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 374 --------EYGIMPKIEHFGCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGA 422
                   +  +   +E +  M+    + GL + A   ++ +Q + + PN +   + L A
Sbjct: 364 MESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSA 423

Query: 423 C 423
           C
Sbjct: 424 C 424


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/529 (42%), Positives = 329/529 (62%), Gaps = 13/529 (2%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F    D ++ +WNTMI  +++S     A+  +  M + G++ D  T   +L A S L  
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLER 229

Query: 159 VRMGEQTHSVAIRNGFESLV---FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + +G++ H+  +RN    L+   FV ++LV MY     V+   +VF+ +  R +  WN++
Sbjct: 230 LDVGKEIHAYVLRN--NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAM 287

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACA-ELGALALGRRAHTYVWKV 273
           I+G+A NG   +AL LF EM    G+ P+  TM S+  AC   L A+A G+  H Y  + 
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRN 347

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
            L+ ++ V +AL+D Y+KCG +  ++RVF EM  +N ++W+ L++   ++G G+EALELF
Sbjct: 348 MLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELF 407

Query: 334 KEM-----EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           K M       G   P EVTF+ V  ACSH G++ EG + F RMK ++G+ P  +H+ C+V
Sbjct: 408 KNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVV 467

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           DLLGRAG +++AYE +  M    + V  W +LLGAC IH +  + E+A   LL LEP  +
Sbjct: 468 DLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVA 527

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
             YVLLSN+Y+    W    EVR+ M +  VKK PG S +E  + V +F  GD SHPQ+E
Sbjct: 528 SHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSE 587

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
           ++H  L  +++K++ EGYVP T  V  +++E+EKE+ L  HSEK+AIAF ++NT PGT +
Sbjct: 588 QLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTI 647

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV KNLRVC DCH A K ISK+  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 648 RVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 174/347 (50%), Gaps = 36/347 (10%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +W   +R    S +   A+  Y +M VSG +PD   +P +LKA+S L D++ GEQ H+ A
Sbjct: 59  SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118

Query: 170 IRNGFES---------------------LVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           ++ G+ S                       F  N+L+ MYA  G V D+  +FE   +RD
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRD 178

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V+WN++I+ F+ + + +EAL  FR M  EGVE DG T+ S+  AC+ L  L +G+  H 
Sbjct: 179 MVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHA 238

Query: 269 YVWKVG-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
           YV +   L +N  V +AL+D Y  C  + + +RVF  +  R    W+ ++ G A NG  +
Sbjct: 239 YVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDE 298

Query: 328 EALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG------IMPK 380
           +AL LF EM ++ G +P   T   V+ AC H        +   + K+ +       +   
Sbjct: 299 KALILFIEMIKVAGLLPNTTTMASVMPACVH------SLAAIAKGKEIHAYAIRNMLASD 352

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           I     +VD+  + G +  +   + N +   N + W  L+ AC +HG
Sbjct: 353 ITVGSALVDMYAKCGCLNLS-RRVFNEMPNKNVITWNVLIMACGMHG 398



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 110/283 (38%), Gaps = 57/283 (20%)

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           R   +W   +     +    EA++ + EM   G  PD +   ++  A + L  L  G + 
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 267 HTYVWKV---------------------GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           H    K                      G+ D    NNAL+  Y+K G +  ++ +F   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG- 364
             R+ VSW+T++   + +    EAL  F+ M + G     VT   VL ACSH   +D G 
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 365 --FSYFKRMKD----------------------------EYGIMPKIEHFGCMVDLLGRA 394
              +Y  R  D                            ++ +  +IE +  M+    R 
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 395 GLVKQAY----EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           GL ++A     E I+   + PN     +++ AC +H  +AIA+
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPAC-VHSLAAIAK 336


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/522 (39%), Positives = 324/522 (62%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAIS 154
           A ++F  + + + F+W  MI GY     P  A+EL+  M  S   K +  T    L A +
Sbjct: 155 AKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAA 214

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            +  +R+G++ H   +R G +S   V ++L  MY   G +++A  +F+ M +RD+V W +
Sbjct: 215 AVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTA 274

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+ +  +G+  E   LF ++   G+ P+ +T   + +ACA   +  LG++ H Y+ +VG
Sbjct: 275 MIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG 334

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                   +AL+  YSKCG +++A+RVF+E  + +  SW++L+ G A NG   EA+  F+
Sbjct: 335 FDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFE 394

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            +   G  P  +TFVGVL AC+H G+VD+G  YF  +K++YG+    +H+ C++DLL R+
Sbjct: 395 LLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARS 454

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G   +A   I  M M P+  +W +LLG C IHG+  +A+ A   L ++EP++   YV L+
Sbjct: 455 GQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLA 514

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA    W  V ++R+TM    V K PG S + +   V  F +GD SHP+++EI+  L 
Sbjct: 515 NIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLG 574

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           +++K++K EG+VP T  V  D+E+E+KE  LSYHSEK+A+AF +++T  GTP++V KNLR
Sbjct: 575 KLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLR 634

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH AIK ISK+ +R+I+VRD +RFH F+DGHCSCRDYW
Sbjct: 635 TCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 32/250 (12%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           KP    Y  L+++  K   ++ G++ H     +GF   +F+ N L+ MYA    + D+ K
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 200 VFELMSERDLVAWNSVINGFASNG-------------------------------KPNEA 228
           +F+ M ERDL +WN +I+G+A  G                               +PNEA
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 229 LTLFREMA-SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           L LFR M  S+  + + +T+ S  +A A +  L +G+  H Y+ + GL  +  V +AL D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y KCG I  A+ +F +M  R+ V+W+ ++     +G  KE  +LF ++   G  P E T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 348 FVGVLYACSH 357
           F GVL AC++
Sbjct: 307 FSGVLNACAN 316



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 134/324 (41%), Gaps = 63/324 (19%)

Query: 48  LLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV---SLSFPMSYAHNIFSH 102
           +L  CA  +S+   K+VH +  R G      D   +   A+V   S    M  A  +F  
Sbjct: 310 VLNACANQTSEELGKKVHGYMTRVGF-----DPFSFAASALVHMYSKCGNMVSAERVFKE 364

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
              P++F+W ++I GYA++  P  A+  +  +  SG +PD  T+  +L A +    V  G
Sbjct: 365 TPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKG 424

Query: 163 -EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
            +  HS+  + G          L H    +     AC                +I+  A 
Sbjct: 425 LDYFHSIKEQYG----------LTHTADHY-----AC----------------IIDLLAR 453

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           +G+ +EA  +  +M+   ++PD +   SL   C   G L L +RA   ++++   +N   
Sbjct: 454 SGQFDEAENIISKMS---MKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIE-PENPAT 509

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAV-----SWSTL-------VVGLAVNGFGKEA 329
              L + Y+  G+     ++ + M  R  V     SW  +       +VG   +   KE 
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEI 569

Query: 330 LE----LFKEMEIGGFVPGEVTFV 349
            E    L K M+  GFVP +  FV
Sbjct: 570 NEFLGKLSKRMKEEGFVP-DTNFV 592



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           ++  I+      +  EAL +  ++     +P      +L  +C +   L  G++ H ++ 
Sbjct: 42  FDEAIHILCQQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIK 97

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             G    + + N LL+ Y+KC  ++ +Q++F EM +R+  SW+ L+ G A  G  +EA  
Sbjct: 98  LSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKS 157

Query: 332 LFKEM 336
           LF +M
Sbjct: 158 LFDKM 162


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/521 (41%), Positives = 323/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +  P++ ++N MI GY  +     +V L+ ++ VSG K ++ +   L+     
Sbjct: 261 ARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFP 320

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +    H    ++G  S   V  +L  +Y+    ++ A  +F+  SE+ L +WN++
Sbjct: 321 FGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAM 380

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A NG   +A++LF+EM    V P+  T+ S+ SACA+LGAL+LG+  H  + +   
Sbjct: 381 ISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESF 440

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N+ V+ AL+D Y+KCG I  AQR+F  M ++NAV+W+ ++ G  ++G+G EAL LF E
Sbjct: 441 ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNE 500

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  VTF+ VLYACSH G+V EG   F+ M  ++G  P  EH+ CMVDLLGRAG
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAG 560

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A ++I+ M + P   +W  LLGAC IH  + +A +A   L +L+P++ G YVLLSN
Sbjct: 561 NLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSN 620

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+  Q +     VR  + + ++ KTPG +L+E+ N +  F  GD+SHPQ   I+AML +
Sbjct: 621 IYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEK 680

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T K++  G+   T     D+EEEEKE  +  HSEK+AIAF L+ + PGT +R++KNLRV
Sbjct: 681 LTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRV 740

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R IVVRD +RFHHFKDG CSC DYW
Sbjct: 741 CLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 195/397 (49%), Gaps = 8/397 (2%)

Query: 85  AIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           AIV+  F  S    A  +F  + + +   WNTM+ G  +++    A+ ++  M   GI  
Sbjct: 146 AIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF 205

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D+ T   +L  +++L D+ +G     +A++ GF S  +V   L  +Y+  G ++ A  +F
Sbjct: 206 DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
             + + DLV++N++I+G+  N +   ++ LF+E+   G + +  ++V L       G L 
Sbjct: 266 GQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLH 325

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           L R  H +  K G+  N +V+ AL   YS+   I +A+ +F E  +++  SW+ ++ G A
Sbjct: 326 LTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYA 385

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            NG  ++A+ LF+EM+     P  VT   +L AC+  G +  G  +   + +       I
Sbjct: 386 QNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNI 444

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
                ++D+  + G + +A + + +M+   NAV W  ++    +HG+   A    + +L 
Sbjct: 445 FVSTALIDMYAKCGSITEA-QRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLH 503

Query: 442 LEPKHSGDYVLLSNLYAYEQRWL--NVQEVRRTMVKE 476
                +G    LS LYA     L     E+ R+MV +
Sbjct: 504 SRVSPTG-VTFLSVLYACSHAGLVREGDEIFRSMVHD 539



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 18/306 (5%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY------AHNIFSHVQDPN 107
           S+ H+L Q HA  I +G  L+N       +  +  L+  +S+      A  +FS + +P+
Sbjct: 21  STLHQLNQTHAQIILNG--LHND------LVTVTKLTHKLSHLKAIDQASLLFSTIPNPD 72

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTH 166
           +F +N +IR ++ + +P  AV LY+ +  S  ++PD  TY F++   S L    +     
Sbjct: 73  LFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS 132

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
            VA   GF S +FV +++V  Y  F  V  A KVF+ M ERD V WN++++G   N   +
Sbjct: 133 IVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFD 189

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           EA+ +F +M   G+  D  T+ ++    AEL  LALG        KVG   +  V   L 
Sbjct: 190 EAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLA 249

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             YSKCG I  A+ +F ++ + + VS++ ++ G   N   + ++ LFKE+ + G      
Sbjct: 250 CLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSS 309

Query: 347 TFVGVL 352
           + VG++
Sbjct: 310 SIVGLI 315



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T    L  I++++ +    QTH+  I NG  + +     L H  +    +  A  +F  +
Sbjct: 9   TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALG 263
              DL  +N +I  F+ N  P+ A++L+  +  S  +EPD +T   + S  + LG   L 
Sbjct: 69  PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLL 128

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
                     G   ++ V +A++  Y K   + AA++VF  M +R+ V W+T+V GL  N
Sbjct: 129 HAHSIV---AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVL 352
               EA+ +F +M  GG      T   VL
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVL 214


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/548 (40%), Positives = 342/548 (62%), Gaps = 7/548 (1%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           +P L   LI     L   +  A  +F   ++  I+ WN + R  A   +    ++LY +M
Sbjct: 112 DPFLATKLINMYYELG-SIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQM 170

Query: 135 HVSGIKPDTHTYPFLLKA--ISKLA--DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +  G   D  TY ++LKA  +S+L+   +R G++ H+  +R+G+E+ + V  +L+ +YA 
Sbjct: 171 NWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAK 230

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMV 248
           FG V  A  VF  M  ++ V+W+++I  FA N  P +AL LF+ M  E     P+  TMV
Sbjct: 231 FGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMV 290

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           ++  ACA L AL  G+  H Y+ +  L   + V NAL+  Y +CG ++  QRVF  M+KR
Sbjct: 291 NMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKR 350

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW++L+    ++GFGK+A+++F+ M   G  P  ++F+ VL ACSH G+V+EG   F
Sbjct: 351 DVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILF 410

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M  +Y I P +EH+ CMVDLLGRA  + +A + I++M   P   +W +LLG+C IH +
Sbjct: 411 ESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCN 470

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             +AE A + L +LEP+++G+YVLL+++YA  + W   + V + +    ++K PG S +E
Sbjct: 471 VELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIE 530

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           +  +V+ F   D  +PQ EEIHA+L +++ ++K +GYVP+T  V  D++EEEKE  +  H
Sbjct: 531 VKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGH 590

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+AF L+NTA G  +R+ KNLR+C DCH   K ISK  +REI+VRD +RFHHF+DG
Sbjct: 591 SEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDG 650

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 651 VCSCGDYW 658



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 138/296 (46%), Gaps = 14/296 (4%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   T+  L+ + ++   +  G   H   + +GF+   F+   L++MY   G +  A KV
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELG 258
           F+   ER +  WN++    A  G   E L L+ +M   G   D +T   +  AC  +EL 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 259 ALAL--GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
              L  G+  H ++ + G   N++V   LLD Y+K G +  A  VF  M  +N VSWS +
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 317 VVGLAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRM 371
           +   A N    +ALELF+ M  E    VP  VT V +L AC+    +++G     Y  R 
Sbjct: 256 IACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRR 315

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           + +  I+P +     ++ + GR G V        NM    + V W +L+    +HG
Sbjct: 316 QLD-SILPVL---NALITMYGRCGEVLMGQRVFDNM-KKRDVVSWNSLISIYGMHG 366



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 39  TSVVRKCI-TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYA 96
           T V++ C+ + L VC   K K  ++HA  +RHG   N   +   L +YA       +SYA
Sbjct: 183 TYVLKACVVSELSVCPLRKGK--EIHAHILRHGYEANIHVMTTLLDVYAKFG---SVSYA 237

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK--PDTHTYPFLLKAIS 154
           +++F  +   N  +W+ MI  +A++  P+ A+EL+  M        P++ T   +L+A +
Sbjct: 238 NSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACA 297

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            LA +  G+  H   +R   +S++ V N+L+ MY   G V    +VF+ M +RD+V+WNS
Sbjct: 298 GLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNS 357

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           +I+ +  +G   +A+ +F  M  +GV P   + +++  AC+  G +  G+
Sbjct: 358 LISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGK 407


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 338/551 (61%), Gaps = 10/551 (1%)

Query: 74  NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
           ++P L   LI A  +LS  +  A  +F      NIF WN M++  A + +   A+   + 
Sbjct: 282 SDPFLSTRLIEAYAALS-ALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLAD 340

Query: 134 MHVSGIKPDTHTYPFLLKAI-----SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188
           M   G+  D+++Y   LKA      S L       + H+ AIR G+     V  +L+  Y
Sbjct: 341 MGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCY 400

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYT 246
           A  G V  A +VF  M +R+LV+W+++I  +A N +P +A+ +F+EM +   +  P+  T
Sbjct: 401 AKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSIT 460

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM- 305
           +VS+  ACA + AL  G+  H Y+ + G    V+V NAL+  Y KCG +   + +F  + 
Sbjct: 461 IVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIG 520

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           R+RN VSW++L+ G  ++GFG+E+L++F+EM   G  P  +TFV VL ACSH G+V++G 
Sbjct: 521 RRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGK 580

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
             F+ M  EY + P+ EH+ CMVDLLGRAG + +A E IQ+M + P+  +W +LLGAC I
Sbjct: 581 KLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRI 639

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485
           HGH   AE+A S L  LEP+++G+YVLL+++YA  +    V  ++  + +  ++K PG S
Sbjct: 640 HGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCS 699

Query: 486 LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL 545
            +E+  +++ F   D  +PQ EE+ A++ E   ++K EGYVP T +V  DIEEEEKE  L
Sbjct: 700 WIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERIL 759

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
             HSEK+A+AF L+ T  G  +R+ KNLR+C DCH   K ISK   REIVVRD +RFHHF
Sbjct: 760 LGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHF 819

Query: 606 KDGHCSCRDYW 616
           ++G CSCRDYW
Sbjct: 820 RNGVCSCRDYW 830



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 134/299 (44%), Gaps = 17/299 (5%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           P   TY  LL A ++  D  +    H  +     F S  F+   L+  YAA   +  A +
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC----- 254
           VF+    +++  WN+++   A      EALT   +M   GV  D Y+      AC     
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           + L A A  R  H +  + G   + +V   L+D Y+K GI+  A+RVF  M  RN VSWS
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWS 425

Query: 315 TLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
            ++   A N    +A+++F+EM       VP  +T V VL+AC+    + +G    +Y  
Sbjct: 426 AMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYIL 485

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHG 427
           R     G    +     ++ +  + G ++    YI N +    N V W +L+    +HG
Sbjct: 486 RR----GFDLLVSVLNALMAMYMKCGCLETG-RYIFNWIGRRRNVVSWNSLISGYGMHG 539


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/471 (43%), Positives = 316/471 (67%), Gaps = 5/471 (1%)

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELMSER 207
             A +++ D  +    H++  + GFE    V N+++  YA  G   ++ A KVF+ M ER
Sbjct: 205 FSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ER 263

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRR 265
           D+V+WNS+I  +A NG   EA+ L+ +M     G++ +   + ++  ACA  GA+  G+R
Sbjct: 264 DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR 323

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  V ++GL +NV V  +++D YSKCG +  A R FR+++++N +SWS ++ G  ++G 
Sbjct: 324 IHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGR 383

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G+EALE+F EM+  G  P  +TF+ VL ACSH G++DEG  ++  MK E+GI   +EH+G
Sbjct: 384 GQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYG 443

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDLLGRAG + +AY  I+ M + P+A IW  LL AC IH +  +AE++   L +L+  
Sbjct: 444 CMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDAS 503

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           +SG YVLLSN+YA  + W +V+ +R  +   R++K PG+S  EL  +++ F++GD+SHPQ
Sbjct: 504 NSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQ 563

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
             EI++ L ++ ++++  GYVP T +V  D++EEEKE AL  HSEK+A+AF L+N+ P +
Sbjct: 564 HIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRS 623

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            + ++KNLRVC+DCH A+K I+K+  REI++RD  RFHHFKDG CSCRDYW
Sbjct: 624 VIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 143/286 (50%), Gaps = 9/286 (3%)

Query: 40  SVVRKCITLLQVCASSKHKLKQV----HAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           SVV +   L+   AS++   + V    HA   + G   N   +   L       S  +  
Sbjct: 194 SVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEV 253

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH--VSGIKPDTHTYPFLLKAI 153
           A  +F  ++  ++ +WN+MI  YA++     A+ LYSKM     GIK +      +L A 
Sbjct: 254 ARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLAC 312

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           +    ++ G++ H+  +R G E  V+V  S+V MY+  G V+ A + F  + E+++++W+
Sbjct: 313 AHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWS 372

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV-WK 272
           ++I G+  +G+  EAL +F EM   G+ P+  T +S+ +AC+  G L  GR  +  +  +
Sbjct: 373 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQE 432

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
            G+   V     ++D   + G +  A  + +EM+ K +A  W  L+
Sbjct: 433 FGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 478


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 323/526 (61%), Gaps = 3/526 (0%)

Query: 93  MSYAHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           +  A  +F  +  P   I +W  ++  YA++  P+ A+E++S+M    +KPD      +L
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A + L D++ G   H+  ++ G E    +  SL  MYA  G V  A  +F+ M   +L+
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            WN++I+G+A NG   EA+ +F EM ++ V PD  ++ S  SACA++G+L   R  + YV
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            +    D+V +++AL+D ++KCG +  A+ VF     R+ V WS ++VG  ++G  +EA+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            L++ ME GG  P +VTF+G+L AC+H GMV EG+ +F RM D + I P+ +H+ C++DL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDL 468

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGRAG + QAYE I+ M + P   +W  LL AC  H H  + E A   L  ++P ++G Y
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHY 528

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           V LSNLYA  + W  V EVR  M ++ + K  G S VE+  R+  F +GD+SHP+ EEI 
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIE 588

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             +  I  +LK  G+V   +    D+ +EE E+ L  HSE+IAIA+ L++T  GTP+R+ 
Sbjct: 589 RQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR C +CH A KLISK+  REIVVRD +RFHHFKDG CSC DYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 221/409 (54%), Gaps = 9/409 (2%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           A+ K +LKQ+HA  +  G+  +   + K LI+A  S    +++A  +F  +  P IF WN
Sbjct: 31  ATHKAQLKQIHARLLVLGLQFSGFLITK-LIHASSSFG-DITFARQVFDDLPRPQIFPWN 88

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +IRGY+ + +   A+ +YS M ++ + PD+ T+P LLKA S L+ ++MG   H+   R 
Sbjct: 89  AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRL 148

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALT 230
           GF++ VFVQN L+ +YA    +  A  VFE   + ER +V+W ++++ +A NG+P EAL 
Sbjct: 149 GFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           +F +M    V+PD   +VS+ +A   L  L  GR  H  V K+GL    ++  +L   Y+
Sbjct: 209 IFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYA 268

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+ +F +M+  N + W+ ++ G A NG+ +EA+++F EM      P  ++   
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 351 VLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            + AC+  G +++  S ++ + + +Y     +     ++D+  + G V+ A   + +  +
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGA-RLVFDRTL 385

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
             + V+W  ++    +HG +  A I+    ++    H  D   L  L A
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREA-ISLYRAMERGGVHPNDVTFLGLLMA 433



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 33/319 (10%)

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
           A+PLL          SGI  D+  Y  L+ + +  A ++   Q H+  +  G +   F+ 
Sbjct: 8   ASPLLYTN-------SGIHSDSF-YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLI 56

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
             L+H  ++FG +  A +VF+ +    +  WN++I G++ N    +AL ++  M    V 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD +T   L  AC+ L  L +GR  H  V+++G   +V V N L+  Y+KC  + +A+ V
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 302 FR--EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           F    + +R  VSW+ +V   A NG   EALE+F +M      P  V  V VL A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNA----- 231

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMV--DLL-------GRAGLVKQAYEYIQNMLMP 410
                F+  + +K    I   +   G  +  DLL        + G V  A + + + +  
Sbjct: 232 -----FTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA-KILFDKMKS 285

Query: 411 PNAVIWRTLLGACTIHGHS 429
           PN ++W  ++     +G++
Sbjct: 286 PNLILWNAMISGYAKNGYA 304


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/599 (39%), Positives = 356/599 (59%), Gaps = 38/599 (6%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
            SS  ++KQ H+  +R G+  NN  + +   +  +S    ++YA  +F+ + +P+ F +N
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYN 71

Query: 113 TMIRGY-AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           T+ + + + S  P L++  YS M    + P+  T+P L++A  KL +    +Q H+  ++
Sbjct: 72  TLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRA-CKLEE--EAKQLHAHVLK 128

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG-------- 223
            GF    +  N+L+H+Y AFG + DA +VF  MS+ ++V+W S+++G++  G        
Sbjct: 129 FGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRV 188

Query: 224 ------KPN------------------EALTLFREMASEG-VEPDGYTMVSLFSACAELG 258
                 K N                  EA  LFR M  E  +E D +   ++ SAC  +G
Sbjct: 189 FELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVG 248

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL  G   H YV K G+  +  +   ++D Y KCG +  A  VF  ++ +   SW+ ++ 
Sbjct: 249 ALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIG 308

Query: 319 GLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           G A++G G++A+ LFKEME    V P  +TFV VL AC+H G+V+EG+ YF+ M D +GI
Sbjct: 309 GFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGI 368

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P  EH+GCMVDLL RAG +++A + I  M M P+A +   LLGAC IHG+  + E   +
Sbjct: 369 DPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGN 428

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            +++L+P++SG YV+L N+YA   +W  V  VR+ M    VKK PG S++E+   V EF 
Sbjct: 429 RVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFV 488

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
            G R HP  E I+A + E+ + +++ G+VP T+ V  D+ EEE+E+ L YHSEK+AIA+ 
Sbjct: 489 AGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYG 548

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+ T  G  +RV KNLRVC DCH A K+ISKVY  +I++RDRSRFHHF +G CSC+DYW
Sbjct: 549 LLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/507 (40%), Positives = 310/507 (61%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN++I G         A+  + KM    +K D +T P +L + + +  ++     H + 
Sbjct: 8   SWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLI 67

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I+ GFE+   V N+L+ MYA  G +  A  VF  M ++D+V+W S++ G++ NG   EA+
Sbjct: 68  IKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAI 127

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            LF +M   GV PD   + S+ SACAEL  +  G++ H  + K GL  +++V+N+L+  Y
Sbjct: 128 KLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMY 187

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG I+ A R F  M  R+ +SW+ L+VG A NG GK +L+ + +M   G  P  +TF+
Sbjct: 188 AKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFI 247

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           G+L+ACSH G++  G +YF+ M   YGI P  EH+ CM+DLLGR+G + +A   +  M++
Sbjct: 248 GLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVV 307

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+AV+W+ LL AC +H    + E+A   L +LEP +S  YV+LSN+Y+   +W +   +
Sbjct: 308 APDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARI 367

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           RR M    + K PG+S +E  ++V  F   DR+HP   EI++ + EI   +K  GYVP  
Sbjct: 368 RRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDM 427

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
                D ++E KE  L+YHSEK+A+AF L+    G P+R+ KNLRVC DCH A+K  SKV
Sbjct: 428 SFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKV 487

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
           Y+R I++RD + FHHF +G CSC DYW
Sbjct: 488 YARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 12/243 (4%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +FS + D ++ +W +++ GY+ + +   A++L+ KM +SG+ PD      +L A ++L  
Sbjct: 98  VFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTV 157

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G+Q H+  +++G ES + V NSLV MYA  G + DA + F+ M  RD+++W ++I G
Sbjct: 158 MDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVG 217

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSD 277
           +A NG+   +L  + +M + G +PD  T + L  AC+  G L  GR     + KV G+  
Sbjct: 218 YAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKP 277

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
                  ++D   + G +  A+ +  +M    +AV W  L+           A  + KE+
Sbjct: 278 GPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLA----------ACRVHKEL 327

Query: 337 EIG 339
           E+G
Sbjct: 328 ELG 330



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 4/218 (1%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M   D V+WNS+I G    G   +AL+ F++M S  ++ D YT+ S+ ++ A +  +   
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H  + K G      VNNAL+D Y+K G +  A  VF +M  ++ VSW++LV G + N
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G  +EA++LF +M I G  P ++    VL AC+   ++D G      +  + G+   +  
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLV-KSGLESSLSV 179

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLL 420
              +V +  + G +  A     N  MP   VI W  L+
Sbjct: 180 DNSLVTMYAKCGSIVDANRAFDN--MPTRDVISWTALI 215



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 123/305 (40%), Gaps = 50/305 (16%)

Query: 7   HSKQPSYEEISDLPC--RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHA 64
           +S   SYEE   L C  R+  +Y    A     + SV+  C  L  +        +Q+HA
Sbjct: 117 YSHNGSYEEAIKLFCKMRISGVYPDQIA-----VASVLSACAELTVMDFG-----QQIHA 166

Query: 65  FSIRHGVPLN-NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESAN 123
             ++ G+  + + D     +YA       +  A+  F ++   ++ +W  +I GYA++  
Sbjct: 167 TLVKSGLESSLSVDNSLVTMYAKCG---SIVDANRAFDNMPTRDVISWTALIVGYAQNGR 223

Query: 124 PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
              +++ Y +M  +G KPD  T+  LL A S                           N 
Sbjct: 224 GKHSLQFYDQMIATGTKPDYITFIGLLFACS--------------------------HNG 257

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           L+    A+    D  KV+ +    +  A   +I+    +GK  EA  L  +M    V PD
Sbjct: 258 LLGSGRAYFEAMD--KVYGIKPGPEHYA--CMIDLLGRSGKLAEAKGLLNQMV---VAPD 310

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
                +L +AC     L LG  A   ++++   +++     L + YS  G    A R+ R
Sbjct: 311 AVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPY-VMLSNMYSAAGKWEDAARIRR 369

Query: 304 EMRKR 308
            MR R
Sbjct: 370 LMRSR 374


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/638 (39%), Positives = 351/638 (55%), Gaps = 53/638 (8%)

Query: 24   KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI 83
            + L  +T  SQ N +  ++R   TLL   A + H L+ +HA  +  G   +   L  +L 
Sbjct: 1193 RVLGPTTGVSQSNMMRPLLRDPTTLLPSLAEASH-LRALHAHLVVSGRLASPSHLAAFL- 1250

Query: 84   YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
             A ++ S  +SYA  +    +   +   N  IR  A    P LA   +  +    + PD 
Sbjct: 1251 -ASLASSNHLSYARLVLPQ-RPATLLAHNAFIRALARGPRPCLAFAAFRDLP---LPPDH 1305

Query: 144  HTYPFLL-------------KAISKLADVRM-GEQTHSVAIRNGFESLVFVQNSLVHMYA 189
            ++  FL+             K +S   + R+     H  A+R G  +   VQ+ ++ MYA
Sbjct: 1306 YSLNFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYA 1365

Query: 190  AFGHVKD--------AC-----------------------KVFELMSERDLVAWNSVING 218
            A G V          AC                        +F+ M +RD VAW+++I G
Sbjct: 1366 ALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAG 1425

Query: 219  FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            +   G+  EAL LF EM S G      T+VS+ +ACA++G L  G+  H YV   G+  +
Sbjct: 1426 YMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMS 1485

Query: 279  VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            + +  AL+D YSKCG ++ A  VF  M +RN  +W++ V GLA+NG G E L+LFK ME 
Sbjct: 1486 IKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEG 1545

Query: 339  GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             G  P  V+FV VL  CS  G+VDEG + F  M D+YG+ P  EH+GCMVDL GRAG + 
Sbjct: 1546 AGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLD 1604

Query: 399  QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
             A  +I +M M P+  +W  LL A  IH    + + A   LL +E ++   +V LSN+YA
Sbjct: 1605 DAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYA 1664

Query: 459  YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              Q W  V  VR  M  + VKK PG S +E+  +V EF++G R HP+  EI  MLAE+ +
Sbjct: 1665 ESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDR 1724

Query: 519  KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
            +L+L+GY   T  V  DIEEEEKE A+S HSEK+A+AF L+       +R+VKNLRVC D
Sbjct: 1725 RLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMD 1784

Query: 579  CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            CH  IKL+SKV++REIV+RDR+RFHHFK G CSCRDYW
Sbjct: 1785 CHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/621 (37%), Positives = 368/621 (59%), Gaps = 64/621 (10%)

Query: 60  KQVHAFSIRHG----VPLNNPDLGKY----------LIYAIVSLSFPMSYAHNIFSHVQ- 104
           ++VH+F ++HG    + + N  L  Y          +++  + L    S+   I SH+Q 
Sbjct: 165 RKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQS 224

Query: 105 --------------DPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFL 149
                         + ++ +WN MI GY +      A++++SKM + S  KPD  T    
Sbjct: 225 GLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASA 284

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA------------------- 190
           L A + L ++++G+Q H+  IR  F++   V N+L+ MY+                    
Sbjct: 285 LSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNL 344

Query: 191 --------------FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
                          G +  A ++F+ +  RD+VAW ++I G+  NG   +A+ LFR M 
Sbjct: 345 DVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG +P+ YT+ ++ S  + L +L  GR+ H    + G + +V+V+NAL+  Y+K G I 
Sbjct: 405 KEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIN 464

Query: 297 AAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
            A+ VF  +  KR+ ++W+++++ LA +G G+EAL LF+ M   G  P  +T+VGVL AC
Sbjct: 465 DARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSAC 524

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           +H G+V++G SY+  M++ + I+P   H+ CM+DL GRAGL+++A+ +I+NM + P+ + 
Sbjct: 525 THVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIA 584

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W +LL +C +H +  +AE+A   LL +EP++SG Y  L+N+Y+   +W N   +R++M  
Sbjct: 585 WGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKD 644

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + VKK  G S V++ N+V  F + D  HPQ + I+ M+A+I K++K  G+VP TE+V  D
Sbjct: 645 KGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHD 704

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EEE KE  LS+HSEK+AIAF L+ T   T +R++KNLRVC DCH AIK ISK+  REI+
Sbjct: 705 LEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREII 764

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD +RFHHFK+G CSCRDYW
Sbjct: 765 VRDATRFHHFKNGLCSCRDYW 785



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 170/397 (42%), Gaps = 66/397 (16%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  + +P+  +W  MI GY +      A+ ++ +M    + P   T   +L + + 
Sbjct: 98  AHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAA 157

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH------VKDACKV--------- 200
           +  + +G + HS  +++G  S + V NSL++MYA  G       V D  K+         
Sbjct: 158 VECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTM 217

Query: 201 ----------------FELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPD 243
                           FE M ERD+V+WN++I+G+  +G   EAL +F +M      +PD
Sbjct: 218 ISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPD 277

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ---- 299
            +T+ S  SACA L  L LG++ H ++ +        V NAL+  YSK G +  AQ    
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337

Query: 300 -----------------------------RVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
                                        R+F  +R R+ V+W+ ++VG   NGF ++A+
Sbjct: 338 QSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ELF+ M   G  P   T   +L   S    +D G           G    +     ++ +
Sbjct: 398 ELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHG-RQIHASATRSGNASSVSVSNALITM 456

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             ++G +  A      +    + + W +++ A   HG
Sbjct: 457 YAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG 493



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 182/405 (44%), Gaps = 82/405 (20%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y   L+   K  D   G+  H+  I+ G    VF+ N+L++ YA  G + DA +VF+ M 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 206 ERDLVAWNSVINGFASNGKPNEA-------------------------------LTLFRE 234
            + + +WN +++G+A  G+  EA                               + +FRE
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M S+ V P  +T+ ++ ++CA +  L +GR+ H++V K GLS  ++V N+LL+ Y+K G 
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 295 IIAAQRVFREMR-------------------------------KRNAVSWSTLVVGLAVN 323
            + A+ VF  M+                               +R+ VSW+ ++ G   +
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 324 GFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           GF +EAL++F +M +     P + T    L AC++     E     K++   + I  + +
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANL----ENLKLGKQIH-AHIIRTEFD 310

Query: 383 HFG----CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI--AR 436
            FG     ++ +  ++G V+ A + I+  ++    VI  T L    + G+  + +I  AR
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTAL----LDGYVKLGDINPAR 366

Query: 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLN--VQEVRRTMVKERVK 479
                L  +    +  +  +  Y Q   N    E+ R+M+KE  K
Sbjct: 367 RIFDSLRVRDVVAWTAM--IVGYVQNGFNQDAMELFRSMIKEGPK 409


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/435 (46%), Positives = 298/435 (68%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+++H YA  G V  A ++F+   +RD  +W+S+I+ +A + +  EAL L+REM +  + 
Sbjct: 58  NTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASII 117

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD  T+VS+ SAC++LGALA+G   H +V    +  ++ +  AL+D Y+KCG I +AQRV
Sbjct: 118 PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRV 177

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  M +++  +WS++++GLA +G G E+L LF +M   G  P  VTFVGVL AC+H G+V
Sbjct: 178 FDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLV 237

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            EG  YF+ M + +GI P +EH+GCMVDLLGR+G V++A + I++M   P+ +IWR LLG
Sbjct: 238 SEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLG 297

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC IH +  IAE A + L  L+P   G YVLLSN+YA    W  V E+R+T+ ++ +++ 
Sbjct: 298 ACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRI 357

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
           PG S +E   ++ EF  GDR HP+++EI+ +L E+  +LK  GY P T  V  DI+E+ K
Sbjct: 358 PGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSK 417

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           E +L+ HSEK+AIAF L+ T   + +R+ KNLR C DCH A+KLIS VY R+++VRDR+R
Sbjct: 418 ERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNR 477

Query: 602 FHHFKDGHCSCRDYW 616
           FHHF +G CSC+DYW
Sbjct: 478 FHHFSEGQCSCKDYW 492



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 137/250 (54%), Gaps = 3/250 (1%)

Query: 70  GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           G+P+ +      +I+   ++   +  A  IF   +D + F+W++MI  YA+S     A+E
Sbjct: 48  GMPMRDLVSWNTMIHG-YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALE 106

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           L+ +MH + I PD  T   ++ A S L  + +G + H     N  E  + +  +L+ MYA
Sbjct: 107 LWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYA 166

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
             G ++ A +VF+ M E+D+  W+S+I G A++G  +E+L+LF +M SEG++P+G T V 
Sbjct: 167 KCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVG 226

Query: 250 LFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-K 307
           +  AC  +G ++ G++    + +V G+   V     ++D   + G +  A+++ R M  +
Sbjct: 227 VLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFE 286

Query: 308 RNAVSWSTLV 317
            + + W  L+
Sbjct: 287 PDTIIWRALL 296


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 344/560 (61%), Gaps = 8/560 (1%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFSHVQDPNIFTWNTMIR 116
            + +HA   ++G   +N      +  A+V++   +    +   +F    + ++ +WN ++ 
Sbjct: 451  ESIHACVCKYGFEYDNT-----VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLS 505

Query: 117  GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            G+ ++      + ++++M   G  P+ +T+  +L++ S L+DV +G+Q H+  ++N  + 
Sbjct: 506  GFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 565

Query: 177  LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              FV  +LV MYA    ++DA  +F  + +RDL AW  ++ G+A +G+  +A+  F +M 
Sbjct: 566  NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 625

Query: 237  SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             EGV+P+ +T+ S  S C+ +  L  GR+ H+   K G S ++ V +AL+D Y+KCG + 
Sbjct: 626  REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 685

Query: 297  AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
             A+ VF  +  R+ VSW+T++ G + +G G +AL+ F+ M   G VP EVTF+GVL ACS
Sbjct: 686  DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 745

Query: 357  HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
            H G+++EG  +F  +   YGI P IEH+ CMVD+LGRAG   +   +I+ M +  N +IW
Sbjct: 746  HMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIW 805

Query: 417  RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             T+LGAC +HG+    E A   L +LEP+   +Y+LLSN++A +  W +V  VR  M   
Sbjct: 806  ETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTR 865

Query: 477  RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
             VKK PG S VE+  +V  F   D SHP+  EIH  L ++ +KL   GY P T++V  ++
Sbjct: 866  GVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNV 925

Query: 537  EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
             + EK++ L YHSE++A+AF L++T+    +R+ KNLR+C DCH  +K IS++ ++E+VV
Sbjct: 926  SDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVV 985

Query: 597  RDRSRFHHFKDGHCSCRDYW 616
            RD + FHHFK+G CSC+++W
Sbjct: 986  RDINCFHHFKNGSCSCQNFW 1005



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 206/400 (51%), Gaps = 12/400 (3%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFS 101
           T+L+ CA+S +    + VH+ +IR G  L+     +++   +V +      A +   +F 
Sbjct: 335 TVLKGCANSGNLRAGQIVHSLAIRIGCELD-----EFISCCLVDMYSKCGLAGDALKVFV 389

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            ++DP++ +W+ +I    +      A E++ +M  SG+ P+  T   L+ A + L D+  
Sbjct: 390 RIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYY 449

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           GE  H+   + GFE    V N+LV MY   G V+D C+VFE  + RDL++WN++++GF  
Sbjct: 450 GESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHD 509

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N   +  L +F +M +EG  P+ YT +S+  +C+ L  + LG++ H  + K  L  N  V
Sbjct: 510 NETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 569

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             AL+D Y+K   +  A+ +F  + KR+  +W+ +V G A +G G++A++ F +M+  G 
Sbjct: 570 GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 629

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P E T    L  CS    +D G      M  + G    +     +VD+  + G V+ A 
Sbjct: 630 KPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA- 687

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           E + + L+  + V W T++   + HG    A  A   +L 
Sbjct: 688 EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 727



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 185/380 (48%), Gaps = 37/380 (9%)

Query: 12  SYEEISDLPCRVKSLYHSTPASQENP----------ITSVV-----------------RK 44
           ++ +  +LP R++  +  TP+   +P          I   V                 R+
Sbjct: 71  AFGDAQNLPVRLQDGFQKTPSKLSSPNRPNSTPGNKIPETVEKKRIWRGLDFDSKGRLRQ 130

Query: 45  CITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNI 99
              +L+ CAS    ++ K +H   I+ G+   NPD   +L  ++V++       +YA  +
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGI---NPD--SHLWNSLVNVYAKCGSANYACKV 185

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + ++ +W  +I G+        AV L+ +M   G++ +  TY   LKA S   D+
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDL 245

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+Q H+ AI+ G  S +FV ++LV +YA  G +  A +VF  M +++ V+WN+++NGF
Sbjct: 246 EFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGF 305

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G   + L LF  M    +    +T+ ++   CA  G L  G+  H+   ++G   + 
Sbjct: 306 AQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDE 365

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            ++  L+D YSKCG+   A +VF  +   + VSWS ++  L   G  +EA E+FK M   
Sbjct: 366 FISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHS 425

Query: 340 GFVPGEVTFVGVLYACSHCG 359
           G +P + T   ++ A +  G
Sbjct: 426 GVIPNQFTLASLVSAATDLG 445



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           KQVHA +I+ G   +  DL  ++  A+V L      M  A  +F  +   N  +WN ++ 
Sbjct: 249 KQVHAEAIKVG---DFSDL--FVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLN 303

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G+A+  +    + L+ +M  S I     T   +LK  +   ++R G+  HS+AIR G E 
Sbjct: 304 GFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL 363

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+   LV MY+  G   DA KVF  + + D+V+W+++I      G+  EA  +F+ M 
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             GV P+ +T+ SL SA  +LG L  G   H  V K G   +  V NAL+  Y K G + 
Sbjct: 424 HSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQ 483

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              RVF     R+ +SW+ L+ G   N      L +F +M   GF P   TF+ +L +CS
Sbjct: 484 DGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543

Query: 357 HCGMVDEG 364
               VD G
Sbjct: 544 SLSDVDLG 551



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 6/286 (2%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  +L+  +   D+  G+  H   I++G      + NSLV++YA  G    ACKVF  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           ERD+V+W ++I GF + G  + A+ LF EM  EGVE + +T  +   AC+    L  G++
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    KVG   ++ V +AL+D Y+KCG ++ A+RVF  M K+NAVSW+ L+ G A  G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF- 384
            ++ L LF  M        + T   VL  C++ G +  G      +    G   +++ F 
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGC--ELDEFI 367

Query: 385 -GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             C+VD+  + GL   A +     +  P+ V W  ++      G S
Sbjct: 368 SCCLVDMYSKCGLAGDALKVFVR-IEDPDVVSWSAIITCLDQKGQS 412


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/625 (37%), Positives = 342/625 (54%), Gaps = 73/625 (11%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+ VH+  I   +  N+  LG  L+ A  SL   ++ A  +F  + + N+   N MIR Y
Sbjct: 59  LRTVHSRIISEDLRYNSS-LGVKLMRAYASLK-DVATARKVFDEIPERNVIIINVMIRSY 116

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             +      ++++  M    +KPD +T+P +LKA S   ++ +G++ H  A + G  S +
Sbjct: 117 VNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTL 176

Query: 179 FVQ-------------------------------NSLVHMYAAFGHVKDACKV------- 200
           FV                                NSLV  YA      DA +V       
Sbjct: 177 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESV 236

Query: 201 ------------------------------FELMSERDLVAWNSVINGFASNGKPNEALT 230
                                         F  M ++ LV+WN +I  +  N  P EA+ 
Sbjct: 237 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 296

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+  M ++G EPD  ++ S+  AC +  AL+LG++ H Y+ +  L  N+ + NAL+D Y+
Sbjct: 297 LYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 356

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+ VF  M+ R+ VSW+ ++     +G G +A+ LF +M+  G VP  + FV 
Sbjct: 357 KCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVT 416

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
            L ACSH G+++EG S FK M D Y I P++EH  CMVDLLGRAG VK+AY++IQ M M 
Sbjct: 417 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPME 476

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           PN  +W  LLGAC +H ++ I  +A   L QL P+ SG YVLLSN+YA   RW  V  +R
Sbjct: 477 PNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIR 536

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M  + +KK PG S VE+   +  F +GDRSHPQ+ EI+  L  + KK+K  GYVP +E
Sbjct: 537 NIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSE 596

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTA---PGTPVRVVKNLRVCADCHLAIKLIS 587
           +   D+EEE+KE  L+ HSEK+AI F L+NT        +R+ KNLR+C DCH+A KLIS
Sbjct: 597 SALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLIS 656

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSC 612
           ++ SREI++RD +RFH F+ G CSC
Sbjct: 657 QITSREIIIRDTNRFHVFRFGVCSC 681


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/658 (38%), Positives = 369/658 (56%), Gaps = 69/658 (10%)

Query: 27  YH--STPASQENPITSVV--RKCITLLQVCAS-SKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           YH  S   S EN  TS +  +  + LL   +S S H LKQVHA ++R G    +  +   
Sbjct: 9   YHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTG-HFQDHYVSGT 67

Query: 82  LIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--- 137
           L+    +  F  +++A  +F +V +PN+F +N +I+G  ++  P  A+  Y KM ++   
Sbjct: 68  LVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHAR 127

Query: 138 --------------------------------GIKPDTHTYPFLLKAISKLADVR----- 160
                                           G+  D H     ++      +V      
Sbjct: 128 PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRM 187

Query: 161 MGEQTHSVAI------------------RNGFESL----VFVQNSLVHMYAAFGHVKDAC 198
           +GE  +S  I                  +  F S+    V   N +V   A  G +++A 
Sbjct: 188 LGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEAR 247

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           ++F  M E++ ++W+++I+G+   G   EAL +F  M  E + P  + + S+ +ACA LG
Sbjct: 248 ELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLG 307

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL  GR  H YV     S +  +  AL+D Y+KCG +  A  VF +M K+   +W+ ++ 
Sbjct: 308 ALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMIC 367

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           GL ++G  ++A+ELF +M+   F P  +T +GVL AC+H GMVDEG   F  M++ YGI 
Sbjct: 368 GLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIE 427

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
           P +EH+GC+VDLLGRAGL+ +A E + +M M P+A +W  LLGAC  HG   + E     
Sbjct: 428 PGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKI 487

Query: 439 LLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
           LL+LEP++SG Y LLSN+YA   RW +V  VR+ M +  VK + G S+++    V EF M
Sbjct: 488 LLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKM 547

Query: 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFML 558
           GD SHPQ + I+ ML  + K+LK+EG+ P T  V  DIEEEEKE  L YHSEK+AIAF L
Sbjct: 548 GDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGL 607

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +NT PGT + VVKNLR+C DCH A KLIS+VY REI+VRDR+R+HHFK G CSC+D+W
Sbjct: 608 INTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/524 (42%), Positives = 321/524 (61%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   ++  W TMI G A++     AV++Y +MH   ++ D      L++A
Sbjct: 156 MDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQA 215

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L   +MG   H   IR      V VQ SLV MYA  GH++ A  VF  M  +++++W
Sbjct: 216 CTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISW 275

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+GFA NG    AL L  +M S G +PD  ++VS+  AC+++G L LG+  H Y+ +
Sbjct: 276 SALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR 335

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
               D V+ + A++D YSKCG +  A+ VF ++  R+++SW+ ++    ++G G+EAL L
Sbjct: 336 RLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSL 394

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F +M      P   TF  +L A SH G+V++G  +F  M +EY I P  +H+ CMVDLL 
Sbjct: 395 FLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLS 454

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG V++A E I++M+  P   IW  LL  C  HG   I E+A   +L+L P   G Y L
Sbjct: 455 RAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSL 514

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SN +A  +RW  V EVR+ M K  +KK PG+S++E+  ++  F M D+SH Q EEI  +
Sbjct: 515 VSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQV 574

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++  ++K  GYVP+TE V  ++EEE KE  L  HSE++AIAF L+NT PGT + + KN
Sbjct: 575 LGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKN 634

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH A K ISK+ +REIVVRD  RFHHFKDG CSC DYW
Sbjct: 635 LRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 214/421 (50%), Gaps = 23/421 (5%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           K +  L + +  +  + ++HA  I  G+   + +    LI +   L    S A  +F   
Sbjct: 8   KSLKTLLITSKDEPTIAKIHALMILTGI-FGHGNSNAKLIQSYARLGHIES-ARQVFDKS 65

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
               +  WN MI  Y+       A+ LY +M   G++PD+ TY  +LKA ++  D+R GE
Sbjct: 66  PQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGE 125

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           +T   A+  G+   VFV  +++++YA  G + +A +VF+ M  RDLV W ++I G A NG
Sbjct: 126 ETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNG 185

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  EA+ ++R+M  + VE DG  M+ L  AC  LG   +G   H Y+ +  +  +V V  
Sbjct: 186 QAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQT 245

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+D Y+K G +  A  VFR M  +N +SWS L+ G A NGF   AL+L  +M+  G+ P
Sbjct: 246 SLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKP 305

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-----MVDLLGRAGLVK 398
             V+ V VL ACS  G       + K  K  +G + +  HF C     ++D+  + G + 
Sbjct: 306 DSVSLVSVLLACSQVG-------FLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLS 358

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL-----EPKHSGDYVLL 453
            A   + + +   +++ W  ++ +  IHG     E A S  LQ+     +P H+    LL
Sbjct: 359 FA-RTVFDQISFRDSISWNAIIASYGIHGS---GEEALSLFLQMRETNVKPDHATFASLL 414

Query: 454 S 454
           S
Sbjct: 415 S 415


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/578 (39%), Positives = 348/578 (60%), Gaps = 14/578 (2%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           +++L  CA ++  H  ++VHAF++R G    V ++   L  Y     V        A  +
Sbjct: 123 VSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEA------ARAV 176

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   N  +WN MI GYA++ N   A+ L+ +M   G+     +    L+A  +L  +
Sbjct: 177 FDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYL 236

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNSVING 218
               + H + +R G  S V V N+L+  YA       A +VF EL +++  ++WN++I G
Sbjct: 237 DEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILG 296

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           F  N  P +A  LF  M  E V PD +T+VS+  A A++      R  H Y  +  L  +
Sbjct: 297 FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQD 356

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V  AL+D YSKCG +  A+R+F   R R+ ++W+ ++ G   +GFG+ A+ELF+EM+ 
Sbjct: 357 VYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G +P E TF+ VL ACSH G+VDEG  YF  MK +YG+ P +EH+G MVDLLGRAG + 
Sbjct: 417 TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLD 476

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A+ +I+NM + P   ++  +LGAC +H +  +AE +   + +L P+    +VLL+N+YA
Sbjct: 477 EAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYA 536

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
               W +V  VR  M K+ ++KTPG S+++L N V  F+ G  +H   ++I+A LA++ +
Sbjct: 537 NASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIE 596

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           ++K  GYVP T+++  D+E++ K   L+ HSEK+AIA+ L+ TAPGT +++ KNLRVC D
Sbjct: 597 EIKDMGYVPDTDSIH-DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCND 655

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A KLIS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 656 CHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   T+  LLK  +  AD+  G   H+     G  S      +L +MY       DA +V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSACAELG 258
           F+ M  RD VAWN+V+ G+A NG P+ A+     M  E  G  PD  T+VS+  ACA+  
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL   R  H +  + GL + VNV+ A+LD Y KCG + AA+ VF  M  RN+VSW+ ++ 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           G A NG   EA+ LF  M   G    + + +  L AC   G +DE
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 329/551 (59%), Gaps = 40/551 (7%)

Query: 103 VQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-- 158
           VQ P  N+ +W ++I GY+ +  P  AV  ++ M   G+ PD       L A SKL +  
Sbjct: 195 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLD 254

Query: 159 -------------VRM---------------GEQTHSVAIRNGFESLVFVQ-----NSLV 185
                        +RM               G+   + A+   F+++   Q     N+++
Sbjct: 255 LGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAV---FDAVGRGQKPEPWNAII 311

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
             Y   GHV  A  +F+ M  RD++ +NS+I G+  +G+  +AL LF +M   G+  D +
Sbjct: 312 DGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNF 371

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+VSL +ACA LGAL  GR  H  + +  + ++V +  ALLD Y KCG +  A  VF  M
Sbjct: 372 TVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRM 431

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            +R+  +W+ ++ GLA NG GK+ALE F +M+  GF P  VT++ VL ACSH  ++DEG 
Sbjct: 432 GERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGR 491

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
            +F  M+  + + P++EH+GCM+DLL R+GL+ +A   +Q M M PNAVIW ++L AC +
Sbjct: 492 LHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRV 551

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485
           H +  +A  A   LL+L P+    YV L N+Y   ++W + + VR  M +  VKKT G+S
Sbjct: 552 HKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYS 611

Query: 486 LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL 545
            + +  +V +F   D+SHP T EI AM+ EI  +LK  GY P T  +  D++EEEKE AL
Sbjct: 612 SITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQAL 671

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
             HSEKIAIAF L++  P  P+ +VKNLRVC DCH AIKL+S++++REI+VRDRSRFHHF
Sbjct: 672 LAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHF 731

Query: 606 KDGHCSCRDYW 616
           +DG CSC D+W
Sbjct: 732 RDGACSCNDFW 742



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   ++ T+N+MI GY  S     A++L+ +M   G++ D  T   LL A + 
Sbjct: 323 ARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACAS 382

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G   H+   +   E  V++  +L+ MY   G V +A  VF  M ERD+  W ++
Sbjct: 383 LGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAM 442

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I G A NG   +AL  F +M  +G +P   T +++ +AC+    L  GR     +  +  
Sbjct: 443 IAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHK 502

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVN 323
           L   V     ++D  ++ G++  A  + + M  + NAV W +++    V+
Sbjct: 503 LHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVH 552



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 39/237 (16%)

Query: 159 VRMGEQTHSVAIRNGF----ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           VR   Q H++   +G      S   + +SL +  +A  H++    +F+ +       +++
Sbjct: 12  VRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDT 71

Query: 215 VING-FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA--LGRRAHTYVW 271
            +     ++   +  + L R M S GV    +T   +F  CA        L    H    
Sbjct: 72  ALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACL 131

Query: 272 KVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
           +  L      V N L+  Y+  G+   A+R F E+  ++AV W+T++ GL   G   EA 
Sbjct: 132 RTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEAR 191

Query: 331 EL-------------------------------FKEMEIGGFVPGEVTFVGVLYACS 356
            L                               F  M   G  P EV  +G L ACS
Sbjct: 192 RLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 360/613 (58%), Gaps = 41/613 (6%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN----NPDLGKYL----------I 83
           + +VVR C  +  V +      K+VH + +R+GV L+    N  L  Y           +
Sbjct: 115 LAAVVRCCAGMGDVESG-----KRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIF---------------TWNTMIRGYAESANPLLAV 128
           +  ++    +S+   I + +Q  +I                +WNT+I G   S +   A+
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADAL 229

Query: 129 ELYSKMHVSGIKPDTHTY--PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
               +M  +G+  + +TY   F+L  +  L D  +G Q H   +    E   FV++SL+ 
Sbjct: 230 SHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPD--LGRQLHGRVLIAALEGDAFVRSSLMD 287

Query: 187 MYAAFGHVKDACKVFELMS--ERDL-VAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           MY   G ++ A  VF+  S   RD+  AW++++ G+  NG+  EAL LFR M  EGV  D
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAAD 347

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+ S+ +ACA +G +  GR+ H  V K+    +  + +A++D Y+KCG +  A+ +F 
Sbjct: 348 RFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFD 407

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
               +N   W++++   A +G G+ A+ELF+ M      P E+T VGVL ACSH G+V E
Sbjct: 408 RACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSE 467

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           G  YFK+M++EYGI+P IEH+ C+VDL GR+GL+ +A  +I+   +   A++W+TLL AC
Sbjct: 468 GELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSAC 527

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
            +H H+  A++A   L+QLE   +G YV+LSN+YA   +W +  E+R +M + +V+K PG
Sbjct: 528 RLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPG 587

Query: 484 HSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKED 543
            S + L N V  F  GD SHPQ+ EI+A L ++ ++LK  GY  RT+ V  D+E+E++E 
Sbjct: 588 RSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRET 647

Query: 544 ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFH 603
           AL +HSEK+AIAF +++T  GTP+R+ KNLRVC DCH AIK IS    REIVVRD  RFH
Sbjct: 648 ALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFH 707

Query: 604 HFKDGHCSCRDYW 616
           HFKD  CSC D+W
Sbjct: 708 HFKDASCSCEDFW 720



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSAC 254
           DA  VF+    R    W   I+G A  G+  + +  F EM +EG   P+ + + ++   C
Sbjct: 63  DARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCC 122

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A +G +  G+R H ++ + G+  +V + NA+LD Y+KCG    A+RVF  M +R+AVSW+
Sbjct: 123 AGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWN 182

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
             +     +G    +++LF E  +           G++ +    G   +  S+ +RM
Sbjct: 183 IAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRS----GHAADALSHLRRM 235


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 354/578 (61%), Gaps = 14/578 (2%)

Query: 47  TLLQVCASSKHKLKQV--HAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIF 100
           +LL +C      +  V  H ++I+ G+  +    N  +  Y  +        +  A  IF
Sbjct: 245 SLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFG------ELRSAETIF 298

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
           + ++  +I +WN+++  + ++  P++A+ +Y+KMH  G+ PD  T   L    ++L +  
Sbjct: 299 NQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFL 358

Query: 161 MGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
                H  V  R  F   + + N+++ MYA  G +  A KVFE +  +D+++WNS+I G+
Sbjct: 359 SSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGY 418

Query: 220 ASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           + NG  NEA+ ++  M    G  P+  T VS+ +A ++LGAL  G +AH  + K  L  +
Sbjct: 419 SQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFD 478

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V+  L+D Y KCG +  A  +F E+  +++VSW+ ++    ++G+G +A++LFKEM+ 
Sbjct: 479 IFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQS 538

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  +TFV +L ACSH G+VDEG   F+ M++ YGI P ++H+GCMVDL GRAG ++
Sbjct: 539 EGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLE 598

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A+ +++NM + P+  +W  LLGAC IH +  +       LL++E ++ G YVLLSN+YA
Sbjct: 599 KAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYA 658

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
               W  V EVR       +KKTPG S +E+  ++  F+ G+++HP+ EEI++ L  +T 
Sbjct: 659 KLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTA 718

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K  GYVP    V  D+E++EKE+ L+ HSE++A+AF +++T P T +++ KNLRVC D
Sbjct: 719 KMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGD 778

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISK+  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 779 CHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 13/375 (3%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           H  KQ+HA  +  G    +  L   LI  YA +     + +A   F  +Q  +++TWN+M
Sbjct: 57  HLAKQLHALLVVSG-KTQSIFLSAKLINRYAFLG---DIPHARLTFDQIQTKDVYTWNSM 112

Query: 115 IRGYAESANPLLAVELYSK-MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           I  YA   +   AV+ +++ +  S ++ D +T+P +++A   L D   G + H + ++ G
Sbjct: 113 ISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLG 169

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           FE  V++  S +H Y+ FG V  AC +F+ M  RD+  WN++I+GF  NGK  EAL +F 
Sbjct: 170 FECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFD 229

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           EM  + V  D  T+ SL   C +L  +  G   H Y  K+GL  ++ V NAL++ Y+K G
Sbjct: 230 EMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFG 289

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            + +A+ +F +M+ R+ VSW++L+     N     AL ++ +M   G VP  +T V +  
Sbjct: 290 ELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLAS 349

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
             +  G      S    +      +  I     ++D+  + G +  A +  +   +P   
Sbjct: 350 VAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEG--LPVKD 407

Query: 414 VI-WRTLLGACTIHG 427
           VI W +L+   + +G
Sbjct: 408 VISWNSLITGYSQNG 422



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 14/269 (5%)

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           V + +Q H++ + +G    +F+   L++ YA  G +  A   F+ +  +D+  WNS+I+ 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 219 FASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           +A  G  + A+  F E  S   ++ D YT   +  AC   G L  GR+ H  V K+G   
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFEC 172

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +V +  + + FYS+ G +  A  +F  M  R+  +W+ ++ G  +NG   EALE+F EM 
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH--FGC--MVDLLGR 393
                   VT   +L  C     +  G      +   Y I   +E   F C  ++++  +
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDLFVCNALINMYAK 287

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            G ++ A E I N +   + V W +LL A
Sbjct: 288 FGELRSA-ETIFNQMKVRDIVSWNSLLAA 315


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 346/594 (58%), Gaps = 9/594 (1%)

Query: 28  HSTPASQENPITSVVRKCITLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-- 83
           HS    Q+  +T      +++L     A++ H+ K +HA+ IR+    +N  L   L+  
Sbjct: 196 HSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFF-FDNVVLQTALLDM 254

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPD 142
           YA   L F   YA  IF+ V   N   W+ MI GY    +   A+ LY  M  + G+ P 
Sbjct: 255 YAKCHLLF---YARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPT 311

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   +L+A ++L D++ G++ H   I++G +    V NSL+ MYA  G + +A    +
Sbjct: 312 PATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLD 371

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M  +D V+++++I+G   NG   +AL +FR+M S G+ P   TM++L  AC+ L AL  
Sbjct: 372 EMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQH 431

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G   H Y    G +++ ++ NA++D YSKCG I  ++ +F  M+ R+ +SW+T+++G  +
Sbjct: 432 GTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGI 491

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G   EAL LF+E++  G  P +VT + VL ACSH G+V EG  +F  M   + I P++ 
Sbjct: 492 HGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMA 551

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+ CMVDLL RAG + +AY +IQ M   PN  IW  LL AC  H +  + E     +  L
Sbjct: 552 HYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLL 611

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
            P+ +G++VL+SN+Y+   RW +   +R        KK+PG S VE+   +  F  G +S
Sbjct: 612 GPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQS 671

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HPQ+  I+  L E+  ++K  GY   +  V  D+EEEEKE  L YHSEK+AIAF ++NT+
Sbjct: 672 HPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTS 731

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P + + V KNLR+C DCH AIK I+ +  REI VRD SRFHHFKDG C+C+D+W
Sbjct: 732 PSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 171/348 (49%), Gaps = 27/348 (7%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +  P++  WN MIR YA S     ++ LY  M   G+ P   T+PFLLKA S 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWN 213
           L  +++G   H+ A   G    ++V  +L+HMYA  GH+  A  +F  +S  +RD+VAWN
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I  F+ +    + +    +M   GV P+  T+VS+     +  AL  G+  H Y  + 
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
              DNV +  ALLD Y+KC ++  A+++F  + K+N V WS ++ G  ++    +AL L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 334 KEME-IGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEYGIMPKI 381
            +M  I G  P   T   +L AC+           HC M+  G      + +        
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNS------- 352

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
                ++ +  + G++  A  ++  M+   + V +  ++  C  +G++
Sbjct: 353 -----LISMYAKCGIMDNAVGFLDEMI-AKDTVSYSAIISGCVQNGYA 394


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 346/605 (57%), Gaps = 4/605 (0%)

Query: 12  SYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGV 71
           +Y +ISDL  +   ++    A+  +P       CI     C       +Q+H+ SI++G 
Sbjct: 320 AYGQISDLA-KSFEIFGQMQATGIHP-NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 72  PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +    G  ++  + S    +  A  I   ++  ++ +W +MI GY +      A+  +
Sbjct: 378 ESDMYVSG--VLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            +M   G+ PD         A + +  +R G Q H+    +G+ + + + N+LV++YA  
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G  ++A  +F  +  +D + WN +I+GF  +    +AL +F +M+  G + + +T +S  
Sbjct: 496 GRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAI 555

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SA A L  +  G++ H    K G +    V NAL+  Y KCG I  A+ +F EM  RN V
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW+T++   + +G G EAL+LF +M+  G  P +VTF+GVL ACSH G+V+EG SYFK M
Sbjct: 616 SWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
            + YG+ P  +H+ C+VD+LGRAG + +A  ++  M +  NA+IWRTLL AC +H +  I
Sbjct: 676 SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEI 735

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            E+A   LL+LEP  S  YVLLSN YA   +W N  +VR+ M    ++K PG S +E+ N
Sbjct: 736 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKN 795

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
            V  FF+GDR HP +++I+  L+E+  +L   GY     N+F + E+E+K+     HSEK
Sbjct: 796 AVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEK 855

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+AF L+   P  P+RV+KNLRVC DCH  +K  S+V  REIV+RD  RFHHF  G CS
Sbjct: 856 LAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCS 915

Query: 612 CRDYW 616
           C DYW
Sbjct: 916 CGDYW 920



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 210/399 (52%), Gaps = 11/399 (2%)

Query: 35  ENPITSVVRKCIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVS 88
           E  ++ +   C+T   LL  CAS     K KQ+H++ ++ G+  +    G  L +Y    
Sbjct: 235 EMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG 294

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
               +  AH+IF+     N+  WN M+  Y + ++   + E++ +M  +GI P+  TYP 
Sbjct: 295 ---DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPC 351

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L+  +    + +GEQ HS++I+NGFES ++V   L+ MY+ +  +  A K+ E++ +RD
Sbjct: 352 ILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRD 411

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V+W S+I G+  +    EAL  F+EM   GV PD   + S  SACA + A+  G + H 
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            V+  G + ++++ N L++ Y++CG    A  +FRE+  ++ ++W+ L+ G   +   ++
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQ 531

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL +F +M   G      TF+  + A ++   + +G     R   + G   + E    ++
Sbjct: 532 ALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV-KTGHTSETEVANALI 590

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            L G+ G ++ A      M +  N V W T++ +C+ HG
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCSQHG 628



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 197/416 (47%), Gaps = 14/416 (3%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHK---LKQVHAFSIRHGVP 72
           + D P ++ SL  +  AS    + S    C   LQ C    ++   + ++HA S+  G+ 
Sbjct: 19  VPDNPEKILSLV-AAKASHHRALGSADLTCA--LQACRGRGNRWPLVLEIHATSVVRGLG 75

Query: 73  LNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
            +   +G  LI  YA   L +    A  +F  +   +  +W  M+ GYA+      A  L
Sbjct: 76  ADRL-IGNLLIDLYAKNGLVWQ---ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRL 131

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           YS+MH + + P  +    +L A +K      G   H+   +  F S  FV N+L+ +Y  
Sbjct: 132 YSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           FG  K A +VF  M   D V +N++I+G A  G    AL +F EM   G+ PD  T+ SL
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            +ACA +G L  G++ H+Y+ K G+S +     +LLD Y KCG I  A  +F    + N 
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           V W+ ++V         ++ E+F +M+  G  P + T+  +L  C+  G ++ G      
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG-EQIHS 370

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +  + G    +   G ++D+  +   + +A + ++ ML   + V W +++     H
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSWTSMIAGYVQH 425



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 191/403 (47%), Gaps = 8/403 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  T+NT+I G+A+  +   A++++ +M +SG++PD  T   LL A + 
Sbjct: 198 AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACAS 257

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D++ G+Q HS  ++ G       + SL+ +Y   G ++ A  +F L    ++V WN +
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           +  +       ++  +F +M + G+ P+ +T   +   C   G + LG + H+   K G 
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V+  L+D YSK   +  A+++   + KR+ VSW++++ G   + F +EAL  FKE
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +       AC+    + +G     R+    G    I  +  +V+L  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCG 496

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             ++A+   +  +   + + W  L+      G S + E A    +++  +    Y + + 
Sbjct: 497 RSEEAFSLFRE-IDHKDEITWNGLISG---FGQSRLYEQALMVFMKM-SQAGAKYNVFTF 551

Query: 456 LYAYEQRWLNVQEVRR-TMVKERVKKTPGHSLVELGNRVFEFF 497
           + A      N+ ++++   V  R  KT   S  E+ N +   +
Sbjct: 552 ISAISA-LANLADIKQGKQVHGRAVKTGHTSETEVANALISLY 593


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/608 (37%), Positives = 350/608 (57%), Gaps = 41/608 (6%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + ++LL  C++++ +  ++HA  +R G+         + +    + S  +  +  +    
Sbjct: 291 RAVSLLTSCSTAR-RAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRT 349

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +DP    + + I  ++   + L A+ L S M   G+ P  HT    L A   L+    G 
Sbjct: 350 RDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP---GR 406

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYA--------------------------------AF 191
             H  A +       +V  +L+ MYA                                  
Sbjct: 407 ALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADM 466

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G + DA  +F+ +  +D V WN++I+G+  +G+PNEAL LFR M   GVEPD  T+V + 
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526

Query: 252 SACAELGALALGRRAHTYV---WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           SA A+LG +  G+  H+YV    +V LS  V V  AL+D Y KCG +  A  VF  +  +
Sbjct: 527 SAVAQLGTVESGKWLHSYVKNSRRVQLS--VRVGTALIDMYCKCGSLGDAVDVFHGIGDK 584

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + V W+ ++ G A++G  ++ALE+F +    G  P ++TF+G+L ACSH GMV+EG  +F
Sbjct: 585 DIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFF 644

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M+ EYGI PKIEH+GCMVDLLGRAGL+K+A+  +Q+M + P+AV+W +LL AC +H +
Sbjct: 645 QSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKN 704

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
            ++ +     L+     +SG Y+LLSN+YA    W  V  VR  M    ++K PG S +E
Sbjct: 705 MSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIE 764

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           +   V+EF  GD SHP+T+EI+ ML ++   +K  G+VP+TE V  D++E  KE AL+ H
Sbjct: 765 IDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVH 824

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+AF L++T PG  +++VKNLR C+DCH  +KLIS++  R+IV RDR+RFHHF DG
Sbjct: 825 SEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDG 884

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 885 SCSCGDYW 892


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 347/595 (58%), Gaps = 37/595 (6%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM-SYAHNIFSHVQDPNIFTWNTMIR 116
           ++KQVHA  IR+G+   +  L K LI  +  +  PM SY   +F  V  PN F W  MIR
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTK-LIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-NGFE 175
           GYA       +   Y++M   G+ P + T+  L KA     ++ +G+Q H+  I   GF 
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERD--------------------------- 208
           S ++V NS++ +Y   G +  A KVF+ MSERD                           
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL 235

Query: 209 ----LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
               +VAW +++ G+A NG+P EAL  F++M   G+E D  T+  + SACA+LGA+    
Sbjct: 236 PLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHAN 295

Query: 265 RAHTYVWKVGL--SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
                  + G   S NV V +AL+D YSKCG    A +VF  M++RN  S+S++++G A+
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G    AL+LF +M      P +VTF+G+L ACSH G+V++G   F +M+  +G+ P  +
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+ CMVDLLGRAG +++A + ++ M M PN  +W  LLGAC IHG+  IA+IA + L +L
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN-RVFEFFMGDR 501
           EP   G+Y+LLSN+YA   RW  V ++R+ + ++  KK PG S  E  N  + +FF GD 
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           +HP++ EI   L ++ ++L+  GY P   +   D+ ++EKE  L  HSEK+A+A+ L+ T
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCT 595

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             G  ++++KN+R+C DCH  +   S++  REI+VRD  RFHHF +G CSC ++W
Sbjct: 596 EAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 345/576 (59%), Gaps = 7/576 (1%)

Query: 46  ITLLQV--CASSKHKL---KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           +T+L V    S +H+L   K++H ++ RHG  L +  +    + A    S  +  A  +F
Sbjct: 402 VTVLNVLPACSGEHQLLSLKEIHGYAFRHGF-LKDELVANAFVAAYAKCS-SLDCAERVF 459

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             ++   + +WN +I  +A++  P  +++L+  M  SG+ PD  T   LL A ++L  +R
Sbjct: 460 CGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLR 519

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G++ H   +RNG E   F+  SL+ +Y     +     +F+ M  + LV WN +I GF+
Sbjct: 520 CGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFS 579

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            N  P EAL  FR+M S G++P    +  +  AC+++ AL LG+  H++  K  LS++  
Sbjct: 580 QNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAF 639

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V  AL+D Y+KCG +  +Q +F  + +++   W+ ++ G  ++G G +A+ELF+ M+  G
Sbjct: 640 VTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKG 699

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P   TF+GVL AC+H G+V EG  Y  +M++ YG+ PK+EH+ C+VD+LGRAG + +A
Sbjct: 700 GRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEA 759

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + +  M   P++ IW +LL +C  +G   I E     LL+LEP  + +YVLLSNLYA  
Sbjct: 760 LKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGL 819

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W  V++VR+ M +  + K  G S +E+G  V+ F + D S  ++++I     ++ KK+
Sbjct: 820 GKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKI 879

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
              GY P T  V  ++EEE K   L  HSEK+AI+F L+NTA GT +RV KNLR+C DCH
Sbjct: 880 SKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCH 939

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            AIKL+SKV  R+I+VRD  RFHHFK+G C+C D+W
Sbjct: 940 NAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 11/341 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCI-TLLQVCASSK--HKLKQVHAF-SIRHGVPLNNPDLGK 80
           +L HS   +     + + ++ I  LL+ C   K  H  ++VHA  S  H   L N  +  
Sbjct: 74  NLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASH--KLRNDVVLS 131

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGI 139
             I A+ S     S +  +F   ++ ++F +N ++ GY+ +A    A+ L+ ++   + +
Sbjct: 132 TRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDL 191

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
            PD  T P + KA + +ADV +GE  H++A++ G  S  FV N+L+ MY   G V+ A K
Sbjct: 192 APDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVK 251

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREM---ASEGVEPDGYTMVSLFSACAE 256
           VFE M  R+LV+WNSV+   + NG   E   +F+ +     EG+ PD  TMV++  ACA 
Sbjct: 252 VFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAA 311

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           +G + +G   H   +K+G+++ V VNN+L+D YSKCG +  A+ +F     +N VSW+T+
Sbjct: 312 VGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTI 371

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACS 356
           + G +  G  +   EL +EM+    V   EVT + VL ACS
Sbjct: 372 IWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 170/343 (49%), Gaps = 13/343 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           VHA +++ G   ++  +G  LI       F  S A  +F  +++ N+ +WN+++   +E+
Sbjct: 217 VHALALKAG-GFSDAFVGNALIAMYGKCGFVES-AVKVFETMRNRNLVSWNSVMYACSEN 274

Query: 122 ANPLLAVELYSKMHVS---GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
                   ++ ++ +S   G+ PD  T   ++ A + + +VRMG   H +A + G    V
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA-S 237
            V NSLV MY+  G++ +A  +F++   +++V+WN++I G++  G       L +EM   
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           E V  +  T++++  AC+    L   +  H Y ++ G   +  V NA +  Y+KC  +  
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS- 356
           A+RVF  M  +   SW+ L+   A NGF  ++L+LF  M   G  P   T   +L AC+ 
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 357 ----HCGMVDEGFSYFKRMK-DEY-GIMPKIEHFGCMVDLLGR 393
                CG    GF     ++ DE+ GI     +  C   LLG+
Sbjct: 515 LKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGK 557


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 347/595 (58%), Gaps = 37/595 (6%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM-SYAHNIFSHVQDPNIFTWNTMIR 116
           ++KQVHA  IR+G+   +  L K LI  +  +  PM SY   +F  V  PN F W  MIR
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTK-LIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-NGFE 175
           GYA       +   Y++M   G+ P + T+  L KA     ++ +G+Q H+  I   GF 
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERD--------------------------- 208
           S ++V NS++ +Y   G +  A KVF+ MSERD                           
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL 235

Query: 209 ----LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
               +VAW +++ G+A NG+P EAL  F++M   G+E D  T+  + SACA+LGA+    
Sbjct: 236 PSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHAN 295

Query: 265 RAHTYVWKVGL--SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
                  + G   S NV V +AL+D YSKCG    A +VF  M++RN  S+S++++G A+
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G    AL+LF +M      P +VTF+G+L ACSH G+V++G   F +M+  +G+ P  +
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           H+ CMVDLLGRAG +++A + ++ M M PN  +W  LLGAC IHG+  IA+IA + L +L
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN-RVFEFFMGDR 501
           EP   G+Y+LLSN+YA   RW  V ++R+ + ++  KK PG S  E  N  + +FF GD 
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           +HP++ EI   L ++ ++L+  GY P   +   D+ ++EKE  L  HSEK+A+A+ L+ T
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCT 595

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             G  ++++KN+R+C DCH  +   S++  REI+VRD  RFHHF +G CSC ++W
Sbjct: 596 EAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 342/571 (59%), Gaps = 4/571 (0%)

Query: 48  LLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+ C  AS++     +H+  ++ G   N+       + +I S S  ++ AH +F  + +
Sbjct: 117 VLKACTRASNRKLGIDLHSLVVKCG--FNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPE 174

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ TW  +  GY  +     A++L+ KM   G++PD++    +L A   + D+  GE  
Sbjct: 175 RSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWI 234

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
                    +   FV+ +LV++YA  G ++ A  VF+ M E+D+V W+++I G+ASN  P
Sbjct: 235 VKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFP 294

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            E +  F +M  E ++PD +++V   S+CA LGAL LG    + + +     N+ + NAL
Sbjct: 295 KEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANAL 354

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D Y+KCG +     VF+EM++++ V  +  + GLA NG  K +  +F + E  G  P  
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            TF+G+L  C H G++ +G  +F  +   Y +   +EH+GCMVDL GRAG++  AY  I 
Sbjct: 415 STFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLIC 474

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           +M M PNA++W  LL  C +   + +AE     L+ LEP ++G+YV LSN+Y+   RW  
Sbjct: 475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDE 534

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             EVR  M ++ +KK PG+S +EL   V EF   D+SHP +++I+A L ++  +++L G+
Sbjct: 535 AAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGF 594

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP TE VF D+E+EEKE  L +HSEK+A+AF L++T  G  +RVVKNLRVC DCH  +KL
Sbjct: 595 VPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKL 654

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ISK+  REIVVRD +RFH F +G CSC DYW
Sbjct: 655 ISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 213/415 (51%), Gaps = 15/415 (3%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMS 94
           TS V++  TL+ V ++  H LKQVH   I H +     L N  L + L +     SF + 
Sbjct: 10  TSKVQQIKTLISVASTFNH-LKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLL- 67

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
                FSH Q PNIF +NT+I G+  +      ++L+  +   G+     T+P +LKA +
Sbjct: 68  -----FSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACT 122

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           + ++ ++G   HS+ ++ GF   V    SL+ +Y+  G + DA KVFE + ER +V W +
Sbjct: 123 RASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTA 182

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           + +G+ + GK  EA+ LF++M   GV PD Y +V + SAC  +G L  G     ++ ++ 
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEME 242

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  N  V   L++ Y+KCG +  A+ VF  M +++ V+WST++ G A N F KE +E F 
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFL 302

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M      P + + VG L +C+  G +D G  +   + D +  +  +     ++D+  + 
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKC 361

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           G + + +E  + M    + VI    +     +GH   + A   ++  L + P  S
Sbjct: 362 GAMARGFEVFKEM-KEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/576 (40%), Positives = 344/576 (59%), Gaps = 9/576 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHV 103
           T+L+ C  S+     +Q+HA  +  G+ L+     + + +YA   L   +S A  +F  +
Sbjct: 68  TILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGL---VSVARRLFDEM 124

Query: 104 QDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRM 161
            +  N+F WN +IR YA       A+ELY +M   G ++PD  TYP +LKA + L D+  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + H   +R  + + VFV   L+ MYA  G V +A  VF+  + RD V WNS+I     
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG+P EAL L R MA+EG+ P   T+VS  SA A+ GAL  GR  H Y W+ G      +
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKL 304

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             +LLD Y+K G +  A+ +F ++  R  +SW+ ++ G  ++G    A ELF+ M     
Sbjct: 305 KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQ 364

Query: 342 V-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
           V P  +TFVGVL AC+H GMV E    F  M   Y I P ++H+ C+VD+LG +G  K+A
Sbjct: 365 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEA 424

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + I+ ML+ P++ IW  LL  C IH +  +AE+A   L++LEP+ +G+YVLLSN+YA  
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQS 484

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W     VR+ M    +KK    S +EL  +   F +GD SHP+++EI+  L  +   +
Sbjct: 485 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLI 544

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
              GYVP T +VF ++E++EK + +  HSE++AIAF L++T PGT + V KNLRVC DCH
Sbjct: 545 SQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCH 604

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + IKLIS++  REI++RD +R+HHF +G CSC+D+W
Sbjct: 605 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-E 202
           + Y  +L++      VR G Q H+  + +G      +   LV +YA+ G V  A ++F E
Sbjct: 64  NNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDE 123

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALA 261
           + ++ ++  WN +I  +A +G    A+ L+REM + G +EPD +T   +  ACA L  L 
Sbjct: 124 MPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLG 183

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            GR  H  V +   + +V V   L+D Y+KCG +  A  VF     R+AV W++++    
Sbjct: 184 AGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACG 243

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPK 380
            NG   EAL L + M   G  P  VT V  + A +  G +  G   +    +  +G   K
Sbjct: 244 QNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDK 303

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           ++    ++D+  ++G V  A   + + L     + W  ++    +HGH+
Sbjct: 304 LK--TSLLDMYAKSGWVTVA-RVLFDQLFHRELISWNAMICGFGMHGHA 349


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 348/578 (60%), Gaps = 11/578 (1%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I+ L  CAS    L  +Q H   I+ G+ ++       L  A+ + +  ++    +FS +
Sbjct: 208 ISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLL--ALYAETSRLAECQKVFSWM 265

Query: 104 QDPNIFTWNTMIRGYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
            + +  +WNT+I   A+S A+   A+E++ +M  +G  P+  T+  LL  +S L+  ++ 
Sbjct: 266 LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLS 325

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFAS 221
            Q H++ ++   +    ++N+L+  Y   G +++  ++F  MSER D V+WNS+I+G+  
Sbjct: 326 HQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIH 385

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N    +A+ L   M   G   D +T  ++ SACA +  L  G   H    +  L  +V +
Sbjct: 386 NELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVI 445

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            +AL+D YSKCG I  A R F  M  RN  SW++++ G A +G G  AL LF  M++ G 
Sbjct: 446 GSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQ 505

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           +P  +TFVGVL ACSH G+VDEGF YFK M + YG++P++EH+ CMVDLLGRAG + +  
Sbjct: 506 LPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIE 565

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST---LLQLEPKHSGDYVLLSNLYA 458
            +I  M + PN +IWRT+LGAC   G+    E+ R     L  ++P+++ +YVLLSN+YA
Sbjct: 566 NFINKMPIKPNILIWRTVLGACC-RGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYA 624

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              +W ++   RR M +  VKK  G S V + + V  F  GD SHP+   I+A L E+ K
Sbjct: 625 SGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDK 684

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K++  GYVP+ +    D+E E KE+ LSYHSEK+A+AF+L   + G P+R++KNLRVC D
Sbjct: 685 KIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAFVLTRNS-GLPIRIMKNLRVCGD 743

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISKV  R IV+RD +RFHHF+DG CSCRDYW
Sbjct: 744 CHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 143/264 (54%), Gaps = 3/264 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D N  TW  +I GY ++  P  A  +  +M   G  P+   +   ++A  +
Sbjct: 54  ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQE 113

Query: 156 -LADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
            +   R G Q H  AIR G  ++ V V N L++MYA  G +  A  VF LM ++D V+WN
Sbjct: 114 SMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWN 173

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+I G   N    +A+  +  M   G+ P  + ++S  S+CA LG + LG++ H    K+
Sbjct: 174 SMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKL 233

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG-KEALEL 332
           GL  +V+V+N LL  Y++   +   Q+VF  M +R+ VSW+T++  LA +G    EA+E+
Sbjct: 234 GLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEV 293

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS 356
           F EM   G+ P  VTF+ +L   S
Sbjct: 294 FLEMMRAGWSPNRVTFINLLATVS 317



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 191/411 (46%), Gaps = 22/411 (5%)

Query: 49  LQVCASS---KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++ C  S   + K +QVH ++IR G+      +G  LI         + +A ++F  + D
Sbjct: 108 IRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCG-DIDHARSVFGLMVD 166

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            +  +WN+MI G  ++     AV+ Y+ M  +G+ P        L + + L  + +G+QT
Sbjct: 167 KDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQT 226

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H   I+ G +  V V N+L+ +YA    + +  KVF  M ERD V+WN+VI   A +G  
Sbjct: 227 HGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGAS 286

Query: 226 -NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            +EA+ +F EM   G  P+  T ++L +  + L    L  + H  + K  + D+  + NA
Sbjct: 287 VSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENA 346

Query: 285 LLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           LL  Y K G +   + +F  M  +R+ VSW++++ G   N    +A++L   M   G   
Sbjct: 347 LLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRL 406

Query: 344 GEVTFVGVLYACS-----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
              TF  VL AC+      CGM     +    ++ +  I         +VD+  + G + 
Sbjct: 407 DCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSA------LVDMYSKCGRID 460

Query: 399 QAYEYIQNMLMP-PNAVIWRTLLGACTIHGH--SAIAEIARSTLLQLEPKH 446
            A  +    LMP  N   W +++     HGH  +A+    R  L    P H
Sbjct: 461 YASRFFN--LMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDH 509



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 7/296 (2%)

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H   +++GF+S +F+ N+L+++Y   G    A K+F+ M +R+ V W  +I+G+  NG P
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSD-NVNVNN 283
            +A  + +EM  EG  P+ +   S   AC E +     GR+ H Y  + GL+D  V V N
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            L++ Y+KCG I  A+ VF  M  +++VSW++++ GL  N   ++A++ +  M   G +P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 344 GEVTFVGVLYACSHCGMVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
                +  L +C+  G +  G  ++ + +K   G+   +     ++ L      + +  +
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIK--LGLDMDVSVSNTLLALYAETSRLAECQK 260

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
               ML   + V W T++GA    G S ++E     L  +    S + V   NL A
Sbjct: 261 VFSWML-ERDQVSWNTVIGALADSGAS-VSEAIEVFLEMMRAGWSPNRVTFINLLA 314


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/549 (42%), Positives = 322/549 (58%), Gaps = 42/549 (7%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE--- 163
            +   N+++R  A    P LA   +  + ++   PD +++ FL++A + LA         
Sbjct: 154 TLLAHNSLLRALARGRRPHLAFGAFRDLPLA---PDNYSFTFLVRAATALAAAAASALDA 210

Query: 164 -----QTHSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------ 194
                  H+ A+R+G      VQ+  V MYAA G V                        
Sbjct: 211 ALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA 270

Query: 195 ------KDACK-VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
                  DA + +F+ M +RD VAWN++I G+   G+  EAL LF EM   G      T+
Sbjct: 271 LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTL 330

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           VS  +ACA+LGAL  G+  H+     G+  +V +  AL+D YSKCG + AA  VF  M +
Sbjct: 331 VSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGE 390

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           RN  +W++ V GLA+NG G++ L LFK ME  G  P  VTFV VL  CS  G+VDEG + 
Sbjct: 391 RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRAC 450

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  MK  +GI P +EH+GCMVDL GRAG +  A  +I  M + P+  +W  LL A  IH 
Sbjct: 451 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHK 510

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           +  + + A   L+ +E K+   +VLLSN+YA  Q W  V  VR  M  + VKK PG S +
Sbjct: 511 NVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAI 570

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+G +V EFF+G ++HP+ +EI  MLAE+ ++L+L+GY+  T+ V  DIEEE+KEDA+S 
Sbjct: 571 EVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISL 630

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF LV       +R+VKNLRVC DCH   K+ISKV++REIV+RDR+RFHHFKD
Sbjct: 631 HSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 690

Query: 608 GHCSCRDYW 616
           G CSC+DYW
Sbjct: 691 GACSCKDYW 699



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +   WN MI GY  +     A+ L+ +M  +G      T    L A ++
Sbjct: 280 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 339

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  HS A   G    V +  +L+ MY+  G V  A +VF+ M ER++  W S 
Sbjct: 340 LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSA 399

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           ++G A NG   + L LF+ M S GVEP+G T V +   C+  G +  GR
Sbjct: 400 VSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 448


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/549 (42%), Positives = 322/549 (58%), Gaps = 42/549 (7%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE--- 163
            +   N+++R  A    P LA   +  + ++   PD +++ FL++A + LA         
Sbjct: 161 TLLAHNSLLRALARGRRPHLAFGAFRDLPLA---PDNYSFTFLVRAATALAAAAASALDA 217

Query: 164 -----QTHSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------ 194
                  H+ A+R+G      VQ+  V MYAA G V                        
Sbjct: 218 ALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA 277

Query: 195 ------KDACK-VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
                  DA + +F+ M +RD VAWN++I G+   G+  EAL LF EM   G      T+
Sbjct: 278 LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTL 337

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           VS  +ACA+LGAL  G+  H+     G+  +V +  AL+D YSKCG + AA  VF  M +
Sbjct: 338 VSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGE 397

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           RN  +W++ V GLA+NG G++ L LFK ME  G  P  VTFV VL  CS  G+VDEG + 
Sbjct: 398 RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRAC 457

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  MK  +GI P +EH+GCMVDL GRAG +  A  +I  M + P+  +W  LL A  IH 
Sbjct: 458 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHK 517

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           +  + + A   L+ +E K+   +VLLSN+YA  Q W  V  VR  M  + VKK PG S +
Sbjct: 518 NVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAI 577

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+G +V EFF+G ++HP+ +EI  MLAE+ ++L+L+GY+  T+ V  DIEEE+KEDA+S 
Sbjct: 578 EVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISL 637

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF LV       +R+VKNLRVC DCH   K+ISKV++REIV+RDR+RFHHFKD
Sbjct: 638 HSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 697

Query: 608 GHCSCRDYW 616
           G CSC+DYW
Sbjct: 698 GACSCKDYW 706



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +   WN MI GY  +     A+ L+ +M  +G      T    L A ++
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  HS A   G    V +  +L+ MY+  G V  A +VF+ M ER++  W S 
Sbjct: 347 LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSA 406

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           ++G A NG   + L LF+ M S GVEP+G T V +   C+  G +  GR
Sbjct: 407 VSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 455


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/535 (41%), Positives = 322/535 (60%), Gaps = 39/535 (7%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSGIKP 141
           +YA  +    +  +  +F  + + N+ +W  +I  Y +S      A+EL+ KM       
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM------- 53

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
                      IS                     S+  V NSL+ MYA  G ++DA K F
Sbjct: 54  -----------ISA--------------------SVNCVGNSLISMYARSGRMEDARKAF 82

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           +++ E++LV++N++++G+A N K  EA  LF E+A  G+    +T  SL S  A +GA+ 
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G + H  + K G   N  + NAL+  YS+CG I AA +VF EM  RN +SW++++ G A
Sbjct: 143 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 202

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +GF   ALE+F +M   G  P E+T+V VL ACSH GM+ EG  +F  M  E+GI+P++
Sbjct: 203 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRM 262

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+ CMVDLLGR+GL+ +A E+I +M +  +A++WRTLLGAC +HG++ +   A   +L+
Sbjct: 263 EHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILE 322

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
            EP     Y+LLSNL+A   +W +V ++R++M +  + K  G S +E+ NRV  F +G+ 
Sbjct: 323 QEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGET 382

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           SHPQ  +I+  L ++  K+K  GY+P T+ V  DIEEE+KE  L  HSEKIA+AF L++T
Sbjct: 383 SHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLIST 442

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +   P+R+ KNLRVC DCH AIK IS    REIVVRD +RFHH K+G CSC DYW
Sbjct: 443 SQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 337/561 (60%), Gaps = 11/561 (1%)

Query: 60  KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           + +H ++I+      + LNN  L  Y      S S  ++ A  +F  + + ++ +W +MI
Sbjct: 271 RALHGYAIKASFGKELTLNNCLLDMY------SKSGNLNSAIQVFETMGERSVVSWTSMI 324

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GYA      ++V L+ +M   GI PD  T   +L A +    +  G+  H+    N  +
Sbjct: 325 AGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQ 384

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S +FV N+L+ MYA  G + DA  VF  M  +D+V+WN++I G++ N  PNEAL LF EM
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM 444

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
                +P+  TM  +  ACA L AL  G+  H ++ + G S + +V NAL+D Y KCG +
Sbjct: 445 QYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 503

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+ +F  + +++ VSW+ ++ G  ++G+G EA+  F EM   G  P EV+F+ +LYAC
Sbjct: 504 GLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 563

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G++DEG+ +F  M++   I PK EH+ C+VDLL RAG + +AY++I+ M + P+A I
Sbjct: 564 SHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATI 623

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LL  C I+    +AE     + +LEP+++G YVLL+N+YA  ++W  V+++R  + +
Sbjct: 624 WGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGR 683

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             ++K PG S +E+  +V  F  GD SHP   +I  +L +   ++K EG+ P+       
Sbjct: 684 RGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIK 743

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
            ++ EKE AL  HSEKIA+AF +++  PG  VRV KNLRVC DCH   K +SK+  R+I+
Sbjct: 744 ADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDII 803

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RD +RFHHFKDG CSCR +W
Sbjct: 804 LRDSNRFHHFKDGSCSCRGHW 824



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 189/366 (51%), Gaps = 10/366 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      ++L+ +M + GI  D  T   ++   S 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G   H  AI+  F   + + N L+ MY+  G++  A +VFE M ER +V+W S+
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G  + ++ LF EM  EG+ PD +T+ ++  ACA  G L  G+  H Y+ +  +
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V+NAL+D Y+KCG +  A  VF EM+ ++ VSW+T++ G + N    EAL LF E
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRA 394
           M+     P  +T   +L AC+    ++ G       +++ + +   + +   +VD+  + 
Sbjct: 444 MQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLKC 500

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDYVL 452
           G +  A   + +M+   + V W  ++    +HG+   AIA         +EP    +   
Sbjct: 501 GALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPD---EVSF 556

Query: 453 LSNLYA 458
           +S LYA
Sbjct: 557 ISILYA 562



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 57/373 (15%)

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLAD 158
           S   D  I  +N  I  + E  N   A+EL ++      KPD    TY  +L+  + L  
Sbjct: 61  SETIDCKITDYNIEICRFCELGNLRRAMELINQ----SPKPDLELRTYCSVLQLCADLKS 116

Query: 159 VRMGEQTHSVAIRNGFE-------------------------------SLVFVQNSLVHM 187
           ++ G + HS+   N  E                                 VF+ N L++ 
Sbjct: 117 IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNG 176

Query: 188 YAAFGH------------------VKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           YA  G+                  V+ A K+F+ + +RD+++WNS+I+G+ SNG   + L
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGL 236

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            LF +M   G+  D  TMVS+ + C+  G L LGR  H Y  K      + +NN LLD Y
Sbjct: 237 DLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMY 296

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           SK G + +A +VF  M +R+ VSW++++ G A  G    ++ LF EME  G  P   T  
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            +L+AC+  G+++ G      +K E  +   +     ++D+  + G +  A+     M +
Sbjct: 357 TILHACACTGLLENGKDVHNYIK-ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV 415

Query: 410 PPNAVIWRTLLGA 422
             + V W T++G 
Sbjct: 416 -KDIVSWNTMIGG 427


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 340/563 (60%), Gaps = 7/563 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+H+++IR G+ +++ +     +YA  S    +     +F  ++D ++ +W  +I GY 
Sbjct: 289 KQLHSWAIRSGL-VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347

Query: 120 ESAN-PLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           ++ N    A+ L+S+M   G ++P+  T+    KA   L+D R+G+Q    A + G  S 
Sbjct: 348 KNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASN 407

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             V NS++ M+     ++DA + FE +SE++LV++N+ ++G   N    +A  L  E+  
Sbjct: 408 SSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE 467

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             +    +T  SL S  A +G++  G + H+ V K+GLS N  V NAL+  YSKCG I  
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDT 527

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A RVF  M  RN +SW++++ G A +GF    LE F +M   G  P EVT+V +L ACSH
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V EG+ +F  M +++ I PK+EH+ CMVDLL RAGL+  A+E+I  M    + ++WR
Sbjct: 588 VGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWR 647

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           T LGAC +H ++ + ++A   +L+L+P     Y+ LSN+YA   +W    E+RR M +  
Sbjct: 648 TFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERN 707

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           + K  G S +E+G+++ +F++GD +HP   +I+  L  +  ++K  GYVP T+ V   +E
Sbjct: 708 LVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLE 767

Query: 538 EEEKEDA----LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
           EE  E      L  HSEKIA+AF L++T+   PVRV KNLRVC DCH A+K IS V  RE
Sbjct: 768 EENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGRE 827

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           IV+RD +RFHHFKDG CSC DYW
Sbjct: 828 IVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 20/334 (5%)

Query: 37  PITSVVRKCITLLQVCASSKH-KL-KQVHAFSIRHGVPLNNPDLGKY-LIYAIVSLSFPM 93
           P+ SV     +LL+ C  ++  +L K VHA  I   +    PD   Y  + ++ S S   
Sbjct: 59  PMDSVTFS--SLLKSCIRARDFRLGKLVHARLIEFDIE---PDSVLYNSLISLYSKSGDS 113

Query: 94  SYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           + A ++F  ++     ++ +W+ M+  Y  +   L A++++ +    G+ P+ + Y  ++
Sbjct: 114 AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVI 173

Query: 151 KAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERD 208
           +A S    V +G  T    ++ G FES V V  SL+ M+       ++A KVF+ MSE +
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V W  +I      G P EA+  F +M   G E D +T+ S+FSACAEL  L+LG++ H+
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 269 YVWKVGLSDNVNVNNALLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVGLAVN-G 324
           +  + GL D+V    +L+D Y+KC   G +   ++VF  M   + +SW+ L+ G   N  
Sbjct: 294 WAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351

Query: 325 FGKEALELFKEMEIGGFV-PGEVTFVGVLYACSH 357
              EA+ LF EM   G V P   TF     AC +
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 137/279 (49%), Gaps = 7/279 (2%)

Query: 85  AIVSLSFPMSYAHNIFSHVQDPN-IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-D 142
           A++S SFP      I S     N I   + +I  +  + +   AV     M   GI+P D
Sbjct: 2   AMISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMD 61

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
           + T+  LLK+  +  D R+G+  H+  I    E    + NSL+ +Y+  G    A  VFE
Sbjct: 62  SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121

Query: 203 LM---SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
            M    +RD+V+W++++  + +NG+  +A+ +F E    G+ P+ Y   ++  AC+    
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181

Query: 260 LALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLV 317
           + +GR    ++ K G    +V V  +L+D + K       A +VF +M + N V+W+ ++
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
                 GF +EA+  F +M + GF   + T   V  AC+
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 20/217 (9%)

Query: 223 GKPNEALTLFREMASEGVEP-DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           G    A++    MA +G+ P D  T  SL  +C       LG+  H  + +  +  +  +
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 282 NNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            N+L+  YSK G    A+ VF  MR   KR+ VSWS ++     NG   +A+++F E   
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF------GC-MVDLL 391
            G VP +  +  V+ ACS+   V  G       +   G + K  HF      GC ++D+ 
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVG-------RVTLGFLMKTGHFESDVCVGCSLIDMF 212

Query: 392 GRA-GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            +     + AY+    M    N V W  ++  C   G
Sbjct: 213 VKGENSFENAYKVFDKM-SELNVVTWTLMITRCMQMG 248


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/611 (39%), Positives = 356/611 (58%), Gaps = 44/611 (7%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + ++L+  C S + ++KQ HA  I   +  +     K L  A  +    +SYAH +F  +
Sbjct: 18  RLVSLIDSCKSMQ-QIKQTHAQLITTALISHPVSANKLLKLAACA---SLSYAHKLFDQI 73

Query: 104 QDPNIFTWNTMIRGYAESA----NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
             P++F +NTMI+ ++ S     N L+     S     G+ P+ +++ F   A      V
Sbjct: 74  PQPDLFIYNTMIKAHSLSPHSCHNSLIVFR--SLTQDLGLFPNRYSFVFAFSACGNGLGV 131

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           + GEQ    A++ G E+ VFV N+L+ MY  +G V ++ KVF+   +RDL +WN++I  +
Sbjct: 132 QEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAY 191

Query: 220 ASNGKPN-------------------------------EALTLFREMASEGVEPDGYTMV 248
             +G  +                               EAL  F +M   G +P+ YT+V
Sbjct: 192 VGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLV 251

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S  +AC+ L AL  G+  H Y+ K  +  N  +  +++D Y+KCG I +A RVF E + +
Sbjct: 252 SALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVK 311

Query: 309 NAV-SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
             V  W+ ++ G A++G   EA+ +F++M++    P +VTF+ +L ACSH  MV+EG  Y
Sbjct: 312 QKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLY 371

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F+ M  +Y I P+IEH+GCMVDLL R+GL+K+A + I +M M P+  IW  LL AC I+ 
Sbjct: 372 FRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYK 431

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR-RTMVKERVKKTPGHSL 486
                      +  ++P H G +VLLSN+Y+   RW   + +R +  +    KK PG S 
Sbjct: 432 DMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSS 491

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI-EEEEKEDAL 545
           +EL     +F +GD+SHPQ+ EI++ L E+T KLK  GYVP    +  DI +EE+KE AL
Sbjct: 492 IELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETAL 551

Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
           S HSEK+AIAF L+NTA GTP+R+VKNLRVC DCH A K ISKVY+R I+VRDR+R+HHF
Sbjct: 552 SVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHF 611

Query: 606 KDGHCSCRDYW 616
           +DG CSC+DYW
Sbjct: 612 EDGICSCKDYW 622


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 345/558 (61%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           ++VHA++++  +  ++  +   L+   +   + +  +  +F  ++  +  +W T+I  YA
Sbjct: 385 REVHAYAVKQRLD-SDLQIANTLMDMYIK-CYSVECSARVFDRMRIKDHVSWTTIIACYA 442

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +S+    A+  +      GIK D      +L+A S L  + + +Q HS AIRNG   L+ 
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLI- 501

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           ++N ++ +Y   G V  A  +FE++ ++D+V W S++N FA NG  +EA+ LF +M + G
Sbjct: 502 LKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAG 561

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           ++PD   +V +  A A L +L  G+  H ++ +        V ++L+D YS CG +  A 
Sbjct: 562 IQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYAL 621

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF E + ++ V W+ ++    ++G GK+A+ +FK M   G  P  V+F+ +LYACSH  
Sbjct: 622 KVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSK 681

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +VDEG  Y   M  +Y + P  EH+ C+VDLLGR+G  ++AY++I++M + P +V+W  L
Sbjct: 682 LVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCAL 741

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IH +  +A IA   LL+LEP + G+YVL+SN++A   +W NV+E+R  M ++ ++
Sbjct: 742 LGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLR 801

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG-YVPRTENVFADIEE 538
           K P  S +E+GN V  F   D SH  ++ IH  LAEIT+KL+ EG YV  T  V  D+ E
Sbjct: 802 KDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSE 861

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK D L  HSE++AI+F L++TA GTP+R+ KNLRVC DCH   KL+SK++ REIVVRD
Sbjct: 862 EEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRD 921

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFHHF  G CSC D+W
Sbjct: 922 ANRFHHFSGGTCSCGDFW 939



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 161/313 (51%), Gaps = 11/313 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+HA ++  G  L + D G +L   ++ +      +  AH +F  +    +F+WN +I 
Sbjct: 75  RQLHAHAVATGA-LGDDDAG-FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIG 132

Query: 117 GYAESANPLLAVELYSKMH----VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
               S     AV +Y  M     V+G  PD  T   +LKA     D R G + H +A+++
Sbjct: 133 ACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKS 192

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTL 231
           G +    V N+LV MYA  G +  A +VFE M + RD+ +WNS I+G   NG   EAL L
Sbjct: 193 GLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDL 252

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FR M S+G   + YT V +   CAEL  L  GR  H  + K G   N+   NALL  Y++
Sbjct: 253 FRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYAR 311

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG + +A RVFRE+  ++ +SW++++     N    EA++ F EM   GF P     V +
Sbjct: 312 CGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSL 371

Query: 352 LYACSHCGMVDEG 364
           L A  H G +  G
Sbjct: 372 LSAVGHLGRLING 384



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 203/431 (47%), Gaps = 22/431 (5%)

Query: 25  SLYHSTPASQENPITSVVRKCITL---LQVCASSKHKL--KQVHAFSIRHGVPLNNPDLG 79
            +Y +  AS+  P+        TL   L+ C +        +VH  +++ G  L+   L 
Sbjct: 145 GVYRAMRASE--PVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG--LDRSTLV 200

Query: 80  KYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
              +  + +    +  A  +F  ++D  ++ +WN+ I G  ++   L A++L+ +M   G
Sbjct: 201 ANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDG 260

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
              +++T   +L+  ++LA +  G + H+  ++ G E  +   N+L+ MYA  G V  A 
Sbjct: 261 FSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSAL 319

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           +VF  + ++D ++WNS+++ +  N    EA+  F EM   G  PD   +VSL SA   LG
Sbjct: 320 RVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLG 379

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            L  GR  H Y  K  L  ++ + N L+D Y KC  +  + RVF  MR ++ VSW+T++ 
Sbjct: 380 RLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIA 439

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS---HCGMVDEGFSYFKRMKDEY 375
             A +    EA+  F+  +  G     +    +L ACS      ++ +  SY  R     
Sbjct: 440 CYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIR----N 495

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAE 433
           G++  I     ++D+ G  G V  A   I  ML   + V W +++     +G  H A+A 
Sbjct: 496 GLLDLILK-NRIIDIYGECGEVCYALN-IFEMLDKKDIVTWTSMVNCFAENGLLHEAVAL 553

Query: 434 IARSTLLQLEP 444
             +     ++P
Sbjct: 554 FGKMLNAGIQP 564



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 173/372 (46%), Gaps = 27/372 (7%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF---ESLVFVQNSLVHMYAAFGHVKDA 197
           P T  Y ++L  ++    V  G Q H+ A+  G    +   F+   L+ MY   G + DA
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASE---GVEPDGYTMVSLFSA 253
            ++F+ M  R + +WN++I    S+G   EA+ ++R M ASE   G  PDG T+ S+  A
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-RNAVS 312
           C   G    G   H    K GL  +  V NAL+  Y+KCG++ +A RVF  MR  R+  S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
           W++ + G   NG   EAL+LF+ M+  GF     T VGVL  C+    ++ G    +   
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH- 428
           +   E+ I         ++ +  R G V  A    +  +   + + W ++L +C +    
Sbjct: 293 KCGTEFNI-----QCNALLVMYARCGWVDSALRVFRE-IGDKDYISWNSML-SCYVQNRL 345

Query: 429 --SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
              AI            P H+    LLS +  +  R +N +EV    VK+R+      S 
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSLLSAV-GHLGRLINGREVHAYAVKQRLD-----SD 399

Query: 487 VELGNRVFEFFM 498
           +++ N + + ++
Sbjct: 400 LQIANTLMDMYI 411



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDL-GKYLIYAIVSLSFPMSYAHNIFSHV 103
           ++L+ C+  K    LKQVH+++IR+G+     DL  K  I  I      + YA NIF  +
Sbjct: 471 SILEACSGLKSISLLKQVHSYAIRNGL----LDLILKNRIIDIYGECGEVCYALNIFEML 526

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              +I TW +M+  +AE+     AV L+ KM  +GI+PD+     +L AI+ L+ +  G+
Sbjct: 527 DKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGK 586

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H   IR  F     V +SLV MY+  G +  A KVF+    +D+V W ++IN    +G
Sbjct: 587 EIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHG 646

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
              +A+ +F+ M   GV PD  + ++L  AC+
Sbjct: 647 HGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 345/605 (57%), Gaps = 4/605 (0%)

Query: 12  SYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGV 71
           +Y +ISDL  +   ++    A+  +P       CI     C       +Q+H+ SI++G 
Sbjct: 320 AYGQISDLA-KSFEIFGQMQATGIHP-NQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 72  PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +    G  ++  + S    +  A  I   ++  ++ +W +MI GY +      A+  +
Sbjct: 378 ESDMYVSG--VLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            +M   G+ PD         A + +  +R G Q H+    +G+ + + + N+LV++YA  
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G  ++A  +F  +  +D + WN +I+GF  +    +AL +F +M   G + + +T +S  
Sbjct: 496 GRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAI 555

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SA A L  +  G++ H    K G +    V NAL+  Y KCG I  A+ +F EM  RN V
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW+T++   + +G G EAL+LF +M+  G  P +VTF+GVL ACSH G+V+EG SYFK M
Sbjct: 616 SWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
            + YG+ P  +H+ C+VD+LGRAG + +A  ++  M +  NA+IWRTLL AC +H +  I
Sbjct: 676 SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEI 735

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            E+A   LL+LEP  S  YVLLSN YA   +W N  +VR+ M    ++K PG S +E+ N
Sbjct: 736 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKN 795

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
            V  FF+GDR HP +++I+  L+E+  +L   GY     N+F + E+E+K+     HSEK
Sbjct: 796 AVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEK 855

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +A+AF L+   P  P+RV+KNLRVC DCH  +K  S+V  REIV+RD  RFHHF  G CS
Sbjct: 856 LAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCS 915

Query: 612 CRDYW 616
           C DYW
Sbjct: 916 CGDYW 920



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 211/399 (52%), Gaps = 11/399 (2%)

Query: 35  ENPITSVVRKCIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVS 88
           E  ++ +   C+T   LL  CAS     K KQ+H++ ++ G+  +    G  L +Y    
Sbjct: 235 EMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG 294

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF 148
               +  AH+IF+     N+  WN M+  Y + ++   + E++ +M  +GI P+  TYP 
Sbjct: 295 ---DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPC 351

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L+  +    + +GEQ HS++I+NGFES ++V   L+ MY+ +G +  A K+ E++ +RD
Sbjct: 352 ILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRD 411

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V+W S+I G+  +    EAL  F+EM   GV PD   + S  SACA + A+  G + H 
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            V+  G + ++++ N L++ Y++CG    A  +FRE+  ++ ++W+ L+ G   +   K+
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQ 531

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL +F +M   G      TF+  + A ++   + +G     R   + G   + E    ++
Sbjct: 532 ALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV-KTGHTSETEVANALI 590

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            L G+ G ++ A      M +  N V W T++ +C+ HG
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCSQHG 628



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 199/416 (47%), Gaps = 14/416 (3%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHK---LKQVHAFSIRHGVP 72
           + D P ++ SL  +  AS    + S    C   LQ C    ++   + ++HA S+  G+ 
Sbjct: 19  VPDNPEKILSLV-AAKASHHRALGSADLTCA--LQACRGRGNRWPLVLEIHATSVVRGLG 75

Query: 73  LNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
            +   +G  LI  YA   L +    A  +F  +   +  +W  M+ GYA+S     A  L
Sbjct: 76  ADRL-IGNLLIDLYAKNGLVWQ---ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRL 131

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           YS+MH + + P  +    +L A +K      G   H+   +  F S  FV N+L+ +Y  
Sbjct: 132 YSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           FG  K A +VF  M   D V +N++I+G A  G    AL +F EM   G+ PD  T+ SL
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            +ACA +G L  G++ H+Y+ K G+S +     +LLD Y KCG I  A  +F    + N 
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           V W+ ++V         ++ E+F +M+  G  P + T+  +L  C+  G ++ G      
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG-EQIHS 370

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +  + G    +   G ++D+  + G + +A + ++ ML   + V W +++     H
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSWTSMIAGYVQH 425



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 162/325 (49%), Gaps = 2/325 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  T+NT+I G+A+  +   A++++ +M +SG++PD  T   LL A + 
Sbjct: 198 AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACAS 257

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D++ G+Q HS  ++ G       + SL+ +Y   G ++ A  +F L    ++V WN +
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           +  +       ++  +F +M + G+ P+ +T   +   C   G + LG + H+   K G 
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V+  L+D YSK G +  A+++   + KR+ VSW++++ G   + F +EAL  FKE
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +       AC+    + +G     R+    G    I  +  +V+L  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCG 496

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLL 420
             ++A+   +  +   + + W  L+
Sbjct: 497 RSEEAFSLFRE-IEHKDEITWNGLI 520


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/521 (41%), Positives = 320/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +F  +++ +  +W  MI G  ++     A++++ +M ++G   D  T+  +L A   
Sbjct: 223 SQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGS 282

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+Q H+  IR   +  VFV ++LV MY+    +K A  VF+ M ++++++W ++
Sbjct: 283 LLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAM 342

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+  NG   EA+ +F EM   GVEPD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 402

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG    + R+F EM  R+ VSW+ L+ G A  G   E + LF+ 
Sbjct: 403 ISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFER 462

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF+GVL ACS  G+V++G  YF+ M  E+GIMP ++H  C++DLLGRAG
Sbjct: 463 MLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAG 522

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A  +I NM   P+ V W TLL +C +HG   I + A  +L+ LEP++   YVLLS+
Sbjct: 523 RLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSS 582

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           LYA + +W  V ++RR M  +RV+K PG+S ++   +V  F   D+S P   +I+A L +
Sbjct: 583 LYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEK 642

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGYVP   +V  D+EE EK   L++HSEK+AIAF L+   PG P+RV+KNLRV
Sbjct: 643 LNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRV 702

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+VRD  RFH FKDG CSC D+W
Sbjct: 703 CGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 207/443 (46%), Gaps = 73/443 (16%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSH 102
           +LL++C  S+++   K++H   ++    +  P+  L   LI A   L   ++YAH++F H
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILK---TIKQPETFLSNNLITAYYKLG-NLAYAHHVFDH 65

Query: 103 VQDPNIFTWNTM-------------------------------IRGYAESANPLLAVELY 131
           +  PN+F+WNT+                               I GYA   +   AV +Y
Sbjct: 66  IPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVY 125

Query: 132 SKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
             M   + +  +  T+  +L   SK   V +G Q +   ++ GF S VFV + LV MY  
Sbjct: 126 KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 191 FGHVKDACKVFELM-------------------------------SERDLVAWNSVINGF 219
            G + DA + F+ M                                ERD ++W  +I G 
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG   EAL +FREM   G   D +T  S+ +AC  L AL  G++ H YV +    DNV
Sbjct: 246 MQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNV 305

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V +AL+D YSKC  I +A+ VF+ M ++N +SW+ ++VG   NGF +EA+++F EM+  
Sbjct: 306 FVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRN 365

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P + T   V+ +C++   ++EG  +  R     G++  I     ++ L G+ G  + 
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVS-GLISFITVSNALITLYGKCGSTEN 424

Query: 400 AYEYIQNMLMPPNAVIWRTLLGA 422
           ++     M +  + V W  LL  
Sbjct: 425 SHRLFTEMNI-RDEVSWTALLAG 446



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 160/371 (43%), Gaps = 74/371 (19%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           +   ++ Y  LLK   +  +    ++ H + ++   +   F+ N+L+  Y   G++  A 
Sbjct: 1   MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH 60

Query: 199 KVFELMSERDLVAWNSV-------------------------------INGFASNGKPNE 227
            VF+ + + +L +WN++                               I+G+A+ G  ++
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120

Query: 228 ALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           A+ +++ M  +  +  +  T  ++   C++   + LGR+ +  + K G   +V V + L+
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180

Query: 287 DFYSK-------------------------------CGIIIAAQRVFREMRKRNAVSWST 315
           D Y+K                               CG+I  +QR+F  +++R+++SW+ 
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMK 372
           ++ GL  NG  +EAL++F+EM + GF   + TF  VL AC     + EG    +Y  R  
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +  +         +VD+  +   +K A E +   +   N + W  +L     +G +  +
Sbjct: 301 HKDNVFVG----SALVDMYSKCRSIKSA-ETVFKRMPQKNVISWTAMLVG---YGQNGFS 352

Query: 433 EIARSTLLQLE 443
           E A     +++
Sbjct: 353 EEAVKIFFEMQ 363


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 345/561 (61%), Gaps = 13/561 (2%)

Query: 62  VHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +H + I+HG+  +    N  +  Y  +        +  A   F  +   ++ +WN++I  
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFG------NLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ES 176
           Y ++ +P+ A   + KM ++G +PD  T   L   +++  D +     H   +R G+   
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V + N++V MYA  G +  A KVFE++  +D+++WN++I G+A NG  +EA+ +++ M 
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 237 S-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             + + P+  T VS+  A A +GAL  G + H  V K  L  +V V   L+D Y KCG +
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRL 571

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + A  +F ++ + ++V+W+ ++    ++G  ++ L+LF EM   G  P  VTFV +L AC
Sbjct: 572 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 631

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G V+EG   F+ M+ EYGI P ++H+GCMVDLLGRAG ++ AY++I++M + P+A I
Sbjct: 632 SHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASI 690

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC IHG+  + + A   L +++ K+ G YVLLSN+YA   +W  V +VR    +
Sbjct: 691 WGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARE 750

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             +KKTPG S +E+  +V  F+ G++SHP+ +EI+  L  +T K+K  GY+P    V  D
Sbjct: 751 RGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD 810

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EE+EKE  L+ HSE++AIAF +++T P +P+R+ KNLRVC DCH A K IS++  REIV
Sbjct: 811 VEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD +RFHHFKDG CSC DYW
Sbjct: 871 VRDSNRFHHFKDGICSCGDYW 891



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 174/337 (51%), Gaps = 7/337 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE-LYSKMHVSGIKPDTHTYPFLLK 151
           +S +   F  +   +++ WN+MI  Y  + +   A+   Y  + VS I+PD +T+P +LK
Sbjct: 167 VSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 226

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D   G + H  A + GF+  VFV  SL+HMY+ FG    A  +F+ M  RD+ +
Sbjct: 227 ACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+G   NG   +AL +  EM  EG++ +  T+VS+   C +LG ++     H YV 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL  ++ V+NAL++ Y+K G +  A++ F++M   + VSW++++     N     A  
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F +M++ GF P  +T V +    +         S    +     +M  +     +VD+ 
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
            + GL+  A++  +  ++P   VI W TL+     +G
Sbjct: 464 AKLGLLDSAHKVFE--IIPVKDVISWNTLITGYAQNG 498



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 14/262 (5%)

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ +  G    +F+   LV++YA  G V  +   F+ + ++D+ AWNS+I+ +  NG  
Sbjct: 139 HALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHF 198

Query: 226 NEALTLFRE--MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +EA+  F +  + SE + PD YT   +  AC   G L  GR+ H + +K+G   NV V  
Sbjct: 199 HEAIGCFYQLLLVSE-IRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAA 254

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  YS+ G    A+ +F +M  R+  SW+ ++ GL  NG   +AL++  EM + G   
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 344 GEVTFVGVLYACSHCGMVDEGF---SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             VT V +L  C   G +        Y  +   E+ +         ++++  + G ++ A
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVS----NALINMYAKFGNLEDA 370

Query: 401 YEYIQNMLMPPNAVIWRTLLGA 422
            +  Q M +  + V W +++ A
Sbjct: 371 RKAFQQMFI-TDVVSWNSIIAA 391


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/531 (43%), Positives = 330/531 (62%), Gaps = 15/531 (2%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESA-NPLLAVELYSKM---HVSGIKPDTHTYPFLLKAIS 154
           I   +  PN FTWN +I+ Y++S  +   A+ LY  +     + + PD HTYPF+LKA +
Sbjct: 37  ILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACA 96

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWN 213
            L  +  G+Q H+  ++ GFE   ++ NSL+H YA+ G+++ A KVF+ M E R++V+WN
Sbjct: 97  YLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWN 156

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
            +I+ +A  G  +  L +F EM  +  EPD YTM S+  AC  LG+L+LG   H +V K 
Sbjct: 157 VMIDSYAKVGDYDIVLIMFCEMM-KVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKK 215

Query: 274 GLSD---NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              +   +V VN  L+D Y KCG +  A++VF  M  R+  SW+++++G AV+G  K AL
Sbjct: 216 CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAAL 275

Query: 331 ELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + F  M ++   VP  +TFVGVL AC+H GMVDEG  YF+ M  EY + P + H+GC+VD
Sbjct: 276 DYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVD 335

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA---EIARSTLLQLEPKH 446
           L  RAG +++A   +  M + P+AVIWR+LL AC    H+++    E+A+          
Sbjct: 336 LYARAGHIQEALNVVSEMPIKPDAVIWRSLLDAC-YKQHASVELSEEMAKQIFESNGSVC 394

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            G YVLLS +YA   RW +V  +R+ M  + V K PG SL+E+     EFF GD +HPQ+
Sbjct: 395 GGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQS 454

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENV-FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
           ++I+  + EI +KL+  GY+P        D   E K++ +  HSE++AIAF L+N+ P  
Sbjct: 455 KDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSM 514

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P+RV KNLRVC DCH   KLIS++Y+ EI+VRDR RFHHFKDG CSC DYW
Sbjct: 515 PIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/549 (42%), Positives = 321/549 (58%), Gaps = 42/549 (7%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE--- 163
            +   N+++R  A    P LA   +  +    + PD +++ FL++A + LA         
Sbjct: 161 TLLAHNSLLRALARGRRPHLAFGAFRDLP---LVPDNYSFTFLVRAATALAAAAASALDA 217

Query: 164 -----QTHSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------ 194
                  H+ A+R+G      VQ+  V MYAA G V                        
Sbjct: 218 ALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA 277

Query: 195 ------KDACK-VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
                  DA + +F+ M +RD VAWN++I G+   G+  EAL LF EM   G      T+
Sbjct: 278 LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTL 337

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           VS  +ACA+LGAL  G+  H+     G+  +V +  AL+D YSKCG + AA  VF  M +
Sbjct: 338 VSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGE 397

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           RN  +W++ V GLA+NG G++ L LFK ME  G  P  VTFV VL  CS  G+VDEG + 
Sbjct: 398 RNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRAC 457

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  MK  +GI P +EH+GCMVDL GRAG +  A  +I  M + P+  +W  LL A  IH 
Sbjct: 458 FDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHK 517

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           +  + + A   L+ +E K+   +VLLSN+YA  Q W  V  VR  M  + VKK PG S +
Sbjct: 518 NVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAI 577

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+G +V EFF+G ++HP+ +EI  MLAE+ ++L+L+GY+  T+ V  DIEEE+KEDA+S 
Sbjct: 578 EVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISL 637

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF LV       +R+VKNLRVC DCH   K+ISKV++REIV+RDR+RFHHFKD
Sbjct: 638 HSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 697

Query: 608 GHCSCRDYW 616
           G CSC+DYW
Sbjct: 698 GACSCKDYW 706



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +   WN MI GY  +     A+ L+ +M  +G      T    L A ++
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  HS A   G    V +  +L+ MY+  G V  A +VF+ M ER++  W S 
Sbjct: 347 LGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSA 406

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           ++G A NG   + L LF+ M S GVEP+G T V +   C+  G +  GR
Sbjct: 407 VSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGR 455


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 338/560 (60%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   I+ G   N      Y+   ++ +      +  AH I   + + ++ +W  +I 
Sbjct: 435 EQIHTQVIKTGFQFN-----VYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALIS 489

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GYA+      A++ + +M   GI+ D   +   + A + +  +  G Q H+ +  +G+  
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE 549

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + + N+LV +YA  G +K+A   FE +  +D ++WN +I+GFA +G   +AL +F +M 
Sbjct: 550 DLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMN 609

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
              +E   +T  S  SA A +  +  G++ H  + K G   ++ V+NAL+ FY+KCG I 
Sbjct: 610 RAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIE 669

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+R F EM ++N VSW+ ++ G + +G+G EA+ LF++M+  G +P  VTFVGVL ACS
Sbjct: 670 DARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACS 729

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V +G  YF+ M  E+G++PK  H+ C+VDL+ RAG + +A ++I+ M + P+A IW
Sbjct: 730 HVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIW 789

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLL ACT+H +  + E A   LL+LEP+ S  YVLLSN+YA   +W    + R+ M   
Sbjct: 790 RTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNR 849

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            VKK PG S +E+ N V  F++GDR HP  ++I+  LAE+ KK    GY     ++  D+
Sbjct: 850 GVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDV 909

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           E+E+K+  +  HSEK+AI F L++ +   P+ V+KNLRVC DCH  IK +SK+ +R I+V
Sbjct: 910 EQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIV 969

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD  RFHHF+ G CSC+DYW
Sbjct: 970 RDAYRFHHFEGGICSCKDYW 989



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 204/392 (52%), Gaps = 15/392 (3%)

Query: 45  CIT---LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHN 98
           C+T   LL  CAS+    K +Q+H++ I+ G+  +    G  L +Y   S    +  AH 
Sbjct: 314 CVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS---DIKTAHE 370

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F   Q  N+  WN M+  + +  N   +  ++ +M + G+ P+  TYP +L+  + +  
Sbjct: 371 MFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGA 430

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           + +GEQ H+  I+ GF+  V+V + L+ MYA  G +  A  +   ++E D+V+W ++I+G
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A +    EAL  F+EM + G++ D     S  SACA + AL  GR+ H   +  G S++
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           +++ NAL+  Y++CG I  A   F ++  ++++SW+ L+ G A +G+ ++AL++F +M  
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
                   TF   + A ++   + +G      M  + G    IE    ++    + G ++
Sbjct: 611 AKLEASFFTFGSAVSAAANIANIKQG-KQIHAMIIKRGFDSDIEVSNALITFYAKCGSIE 669

Query: 399 QA-YEYIQNMLMP-PNAVIWRTLLGACTIHGH 428
            A  E+ +   MP  N V W  ++   + HG+
Sbjct: 670 DARREFCE---MPEKNDVSWNAMITGYSQHGY 698



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 197/401 (49%), Gaps = 26/401 (6%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKL-----KQVHAFSIRHGV----PLNNPDLGKYLIYA 85
           E    SV+R C         S H++     +Q+HA  I HG+     ++NP +G Y    
Sbjct: 111 EISFASVLRAC---------SGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNG 161

Query: 86  IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           ++        A  +F ++   +  +W  MI G++++     A+ L+ +MH +GI P  + 
Sbjct: 162 LII------SARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +  +L   +K+    +GEQ H++  + G     +V N+LV +Y+   +   A KVF  M 
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ 275

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            +D V++NS+I+G A  G  + AL LF +M  + ++PD  T+ SL SACA  GAL  G +
Sbjct: 276 SKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ 335

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H+YV K G+S ++ V  ALLD Y  C  I  A  +F   +  N V W+ ++V       
Sbjct: 336 LHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDN 395

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
             E+  +F++M+I G +P + T+  +L  C+  G +D G     ++  + G    +    
Sbjct: 396 LSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI-KTGFQFNVYVCS 454

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            ++D+  + G +  A+  I   L   + V W  L+     H
Sbjct: 455 VLIDMYAKHGKLDTAH-VILRTLTEDDVVSWTALISGYAQH 494



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 183/377 (48%), Gaps = 20/377 (5%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           +Q+HA   ++G  L       Y+  A+V+L   M     A  +FS +Q  +  ++N++I 
Sbjct: 233 EQLHALVFKYGSSLET-----YVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLIS 287

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G A+      A+EL++KM    +KPD  T   LL A +    +  GEQ HS  I+ G  S
Sbjct: 288 GLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISS 347

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + V+ +L+ +Y     +K A ++F      ++V WN ++  F      +E+  +FR+M 
Sbjct: 348 DMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQ 407

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +G+ P+ +T  S+   C  +GAL LG + HT V K G   NV V + L+D Y+K G + 
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  + R + + + VSW+ L+ G A +    EAL+ FKEM   G     + F   + AC+
Sbjct: 468 TAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA 527

Query: 357 HCGMVDEGF-----SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
               +++G      SY     ++  I         +V L  R G +K+AY   +  +   
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIG------NALVSLYARCGRIKEAYLEFEK-IDAK 580

Query: 412 NAVIWRTLLGACTIHGH 428
           +++ W  L+      G+
Sbjct: 581 DSISWNGLISGFAQSGY 597



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 191/383 (49%), Gaps = 13/383 (3%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I LL +C +S    + K++H   ++ G   N   L   L+    +L   +     +F  +
Sbjct: 14  IWLLDLCLNSGSLVECKKLHGKILKLGFG-NESVLCNKLVDVYFALG-DLDGVVKVFEDM 71

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS-KLADVRMG 162
            + ++ +W+ +I G+ E       ++L+S M    + P   ++  +L+A S     +R  
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           EQ H+  I +G      + N L+ +YA  G +  A KVF+ +  +D V+W ++I+GF+ N
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G   EA+ LF EM + G+ P  Y   S+ S C ++    +G + H  V+K G S    V 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+  YS+    ++A++VF +M+ ++ VS+++L+ GLA  GF   ALELF +M+     
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 343 PGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           P  VT   +L AC+  G + +G    SY  +     GI   +   G ++DL      +K 
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKA----GISSDMIVEGALLDLYVNCSDIKT 367

Query: 400 AYEYIQNMLMPPNAVIWRTLLGA 422
           A+E         N V+W  +L A
Sbjct: 368 AHEMFLTA-QTENVVLWNVMLVA 389



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 160/377 (42%), Gaps = 44/377 (11%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   GI  +  TY +LL        +   ++ H   ++ GF +   + N LV +Y A G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +    KVFE M  R + +W+ +I+GF      N  L LF  M  E V P   +  S+  A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 254 CA--ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           C+   +G +    + H  +   GL  +  ++N L+  Y+K G+II+A++VF  +  +++V
Sbjct: 121 CSGHRIG-IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG------- 364
           SW  ++ G + NG+ +EA+ LF EM   G  P    F  VL  C+   + D G       
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV 239

Query: 365 FSYFKRMKDE--------YGIMPKI---------------EHFGCMVDLLGRAGLVKQAY 401
           F Y   ++          Y  MP                   F  ++  L + G    A 
Sbjct: 240 FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGAL 299

Query: 402 EYIQNM---LMPPNAVIWRTLLGACTIHG--------HSAIAEIARSTLLQLEPKHSGDY 450
           E    M    + P+ V   +LL AC  +G        HS + +   S+ + +E      Y
Sbjct: 300 ELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLY 359

Query: 451 VLLSNLYAYEQRWLNVQ 467
           V  S++    + +L  Q
Sbjct: 360 VNCSDIKTAHEMFLTAQ 376


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/537 (41%), Positives = 324/537 (60%), Gaps = 31/537 (5%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WN +I G+  S    L+   +  M  +       TY  +L A  K  D+ +G Q H   +
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVL 188

Query: 171 RNGFESLVFVQNSLVHMYAAFG-------------------------------HVKDACK 199
            +G      V+N+LV MYA  G                                V  A  
Sbjct: 189 ESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARD 248

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           +F+ M ERD +AW ++I+G+   G+  +AL  FR M    V  D +TMVS+ +ACA+LGA
Sbjct: 249 LFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGA 308

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L  G  A  Y+ ++G+  +V V NAL+D YSKCG I  A  VF++M  R+  +W+ +++G
Sbjct: 309 LETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILG 368

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           LAVNG G+EA+++F  M      P EVTFVGVL AC+H G+VD+G  +F  M + Y I P
Sbjct: 369 LAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISP 428

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            + H+GC++D+LGRAG +K+A + I  M M PN+ IW TLL +C ++G+S I E+A   L
Sbjct: 429 TVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERL 488

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           L+L+P +S  Y+LLSN+YA   RW +V+ +R+ ++++ +KK PG S++E+   + EF   
Sbjct: 489 LELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAA 548

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           DRSHP  +EI++ L  +   L+  GYVP    V  ++ EEEK+  L +HSEK+A+ F L+
Sbjct: 549 DRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALL 608

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +     +R+VKNLR+C DCH AIKLISK+Y RE++VRDR+RFHHF+ G CSC+DYW
Sbjct: 609 TSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 5/247 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F H+ + +   W  MI GY +      A+E +  M +  ++ D  T   ++ A ++
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  GE       R G +  VFV N+L+ MY+  G ++ A  VF+ M  RD   W ++
Sbjct: 306 LGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I G A NG+  EA+ +F  M      PD  T V + +AC   G +  GR     + +   
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN 425

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGKEAL 330
           +S  V     L+D   + G +  A     +M  K N+  W TL+    V G    G+ A 
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 331 ELFKEME 337
           E   E++
Sbjct: 486 ERLLELD 492



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 41/321 (12%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT-----HSVAIRNGFESLVFVQ 181
           AV  Y +M   G +PD +T+P LLKA +      +   +     H+  ++ G ES     
Sbjct: 35  AVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAA 94

Query: 182 NSLVHMYAAFGHVKDACKVFELM----SERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +SL+ MYAA G    A  V E           V WN++I+G   +G+   +   F +M  
Sbjct: 95  SSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVR 154

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
                   T VS+ SAC +   L LG + H  V + G+  +  V NAL+D Y++CG + A
Sbjct: 155 ASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDA 214

Query: 298 AQRVFREMRKRNAVSWSTLVVGLA--------------------------VNGFG----- 326
           A  +F  M+ R+  SW++++ GL                           ++G+      
Sbjct: 215 AWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRF 274

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           ++ALE F+ M+I      E T V V+ AC+  G ++ G  + +      GI   +     
Sbjct: 275 RDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNA 333

Query: 387 MVDLLGRAGLVKQAYEYIQNM 407
           ++D+  + G +++A +  ++M
Sbjct: 334 LIDMYSKCGSIERALDVFKDM 354


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 338/595 (56%), Gaps = 40/595 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q HA  + HG+  N     K  + A+ + S  +  A  +F  + +P+   +N++IR Y 
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAK--MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154

Query: 120 ESANPLLA---VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
                      +E Y++MH  G+  D  T PF+LK+ + L+ V MG   H   +R G E 
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEG 214

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV--------------------- 215
             +V  SL+ MY   G + DA K+F+ M  RD+ +WN++                     
Sbjct: 215 DFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME 274

Query: 216 ----------INGFASNGKPNEALTLFREMASEGVE--PDGYTMVSLFSACAELGALALG 263
                     I+G+  NG   +AL LF EM  +G E  P+  T+VS+  ACA+  AL  G
Sbjct: 275 HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 334

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLA 321
           RR H +   +GL  N +V  AL   Y+KC  ++ A+  F  + +  +N ++W+T++   A
Sbjct: 335 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +G G EA+ +F+ M   G  P  VTF+G+L  CSH G++D G ++F  M   + + P++
Sbjct: 395 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRV 454

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+ C+VDLLGRAG + +A E I  M M     +W  LL AC  H +  IAE+A   L  
Sbjct: 455 EHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFV 514

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           LEP +SG+YVLLSNLYA    W  V+++R  +  + +KK+PG S +E+  +   F   D+
Sbjct: 515 LEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADK 574

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           SHPQ +EI+  L  + +K+K+ GY+P T  V  DI EEEKE  L+ HSEK+AIAF L+NT
Sbjct: 575 SHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNT 634

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            PG  +RV KNLR+C DCH A K ISK+Y REI+VRD +RFH FKDG CSC DYW
Sbjct: 635 RPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 146/331 (44%), Gaps = 52/331 (15%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   +Y  + + +++   +++G+Q H+  + +G +   F+   +V MYA+ G +  A  V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 201 FELMSERDLVAWNSVINGFASNG---KPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           F+ +     + +NS+I  +  +G        L  +  M   G+  D +T+  +  +CA+L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR----------------- 300
             + +GR  H    +VGL  +  V  +L+D Y KCG+I  A++                 
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254

Query: 301 --------------VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG--FVPG 344
                         +F  M  RN VSW+ ++ G   NGF ++AL LF EM   G    P 
Sbjct: 255 AGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            VT V VL AC+    ++ G    +R+ D   GI     H    V     AG+  + Y  
Sbjct: 315 WVTIVSVLPACAQSAALERG----RRIHDFANGIG---LHLNSSVQ-TALAGMYAKCYSL 366

Query: 404 IQ-----NMLMP--PNAVIWRTLLGACTIHG 427
           ++     +M+     N + W T++ A   HG
Sbjct: 367 VEARCCFDMIAQNGKNLIAWNTMITAYASHG 397


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/591 (38%), Positives = 337/591 (57%), Gaps = 37/591 (6%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           QVHA  +  G  L    L    + A  + S  +  + ++F+ + +P+   +N+MIR YA 
Sbjct: 91  QVHAHMLLRG--LQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
                  V  Y  MH  G   D  T+PF+LK+  +L  V MG+  H + +R G +  ++V
Sbjct: 149 YGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 208

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERD-------------------------------L 209
             SL+ +Y   G + DA KVF+ M+ RD                               +
Sbjct: 209 ATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI 268

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASE--GVEPDGYTMVSLFSACAELGALALGRRAH 267
           V+W ++I+G++ +G   +AL+LF EM  E  GV P+  T++S+  ACA+L  L  GR+ H
Sbjct: 269 VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIH 328

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGF 325
               ++GL+ N +V  AL   Y+KCG ++ A+  F ++ +  +N ++W+T++   A  G 
Sbjct: 329 ELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH 388

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G +A+  F+EM   G  P ++TF G+L  CSH G+VD G  YF  M   Y I P++EH+ 
Sbjct: 389 GLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYA 448

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C+ DLLGRAG + +A + +  M MP    IW +LL AC  H +  +AE A   L  LEP+
Sbjct: 449 CVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPE 508

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           ++G+YVLLSN+YA   RW  V ++R  +  +  KK+PG S +E+  +   F  GD SHPQ
Sbjct: 509 NTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQ 568

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            +EI+  L  + +K+K  GY P T  V  DI EEEKE  L  HSEK+A+AF ++NT   T
Sbjct: 569 GKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAET 628

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +RV KNLR+C DCH A+  IS++Y RE++VRD +RFHHFK G CSC DYW
Sbjct: 629 VLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 35/322 (10%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   +Y  + + ++ L  +++G Q H+  +  G +    V + +V  YA+ G +  +  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F  + E   + +NS+I  +A  G     +  +  M S G   D +T   +  +  EL ++
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC---------------------------- 292
            +G+  H  + ++GL  ++ V  +L+  Y KC                            
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 247

Query: 293 ---GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVT 347
              G I AA  +F  M  RN VSW+T++ G + +G  ++AL LF EM  E  G  P  VT
Sbjct: 248 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 307

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            + VL AC+    ++ G      +    G+         +  +  + G +  A      +
Sbjct: 308 IMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366

Query: 408 -LMPPNAVIWRTLLGACTIHGH 428
                N + W T++ A   +GH
Sbjct: 367 NRNEKNLIAWNTMITAYASYGH 388


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 327/552 (59%), Gaps = 32/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N  +W  MI GYA++     A+ L  ++H SG+ P   +   +  A S 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS- 214
           +  +  G Q HS+A++ G +   F  N+L+ MY    +++ A +VF  M  +D+V+WNS 
Sbjct: 432 IVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSF 491

Query: 215 ------------------------------VINGFASNGKPNEALTLFREMASEGVEPDG 244
                                         +I+ +A   + NEA+  F+ M  E   P+ 
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +  L   C  LGA  +G++ HT   K+G+   + V NAL+  Y KCG    ++R+F  
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDL 610

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M +R+  +W+T++ G A +G G+EA+++++ ME  G +P EVTFVG+L ACSH G+VDEG
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
           + +FK M  +YG+ P  EH+ CMVDLLGR G V+ A ++I +M + P+ VIW  LLGAC 
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IH ++ I + A   L ++EP ++G+YV+LSN+Y+    W  V EVR+ M ++ V K PG 
Sbjct: 731 IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S  ++ +++  F  GD+ H Q EEI A L E+   LK  GYVP TE V  DI+EE+KE +
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEK+A+A+ L+ T  G P++++KNLR+C DCH  IK +S V  R+I +RD +RFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910

Query: 605 FKDGHCSCRDYW 616
           F++G CSC D+W
Sbjct: 911 FRNGSCSCEDFW 922



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 20/391 (5%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  M  A N+F  + + N+ +W  MI GY    N   A +++ KMH  G+ PD   +   
Sbjct: 171 SLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD-ACKVFELMSERD 208
           L A+  L ++ + E    +A++ GFE  V +  +++++Y+    V D A K FE M ER+
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+++I   +  G+ + A+ ++        E D    ++  +A    G    GR    
Sbjct: 291 EYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTALIT-GLAQCGRIDDA 341

Query: 269 YVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            +    + + + V+ NAL+  Y + G++  A+ +F +M  RN +SW+ ++ G A NG  +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC- 386
           EAL L +E+   G +P   +   + +ACS+   ++ G +    +  + G   +   F C 
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGC--QFNSFACN 458

Query: 387 -MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            ++ + G+   ++ A +    M+   + V W + L A      + + + AR+T   +  +
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMV-TKDIVSWNSFLAALV---QNDLLDEARNTFDNMLSR 514

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
               +  + + YA+ ++        +TM  E
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCE 545



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 47/351 (13%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A   F  + + N +TW+TMI   +       A+ +Y +  V  I   T     L + 
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQC 335

Query: 153 ISKLADVR-MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             ++ D R + EQ          E +V   N+L+  Y   G V +A ++F+ M  R+ ++
Sbjct: 336 -GRIDDARILFEQIP--------EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS 386

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W  +I G+A NG+  EAL L +E+   G+ P   ++ S+F AC+ + AL  G + H+   
Sbjct: 387 WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV 446

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           KVG   N    NAL+  Y KC  +  A++VF  M  ++ VSW++ +  L  N    EA  
Sbjct: 447 KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARN 506

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F  M        +V++  ++ A +H    +E    FK M  E+ +              
Sbjct: 507 TFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-------------- 548

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
                              PN+ I   LLG C   G S I +   +  ++L
Sbjct: 549 -------------------PNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 183/457 (40%), Gaps = 64/457 (14%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRH--------GVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           C  LL+ C S+         F++RH        G      DLG+            +  A
Sbjct: 3   CRLLLRRCLSAAAASSAAARFAVRHAHGELEVSGCSARIRDLGRL---------GRVGEA 53

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  +   +I  WN+MI  Y  +  P  A +LY    +SG   +  T   LL    +L
Sbjct: 54  REVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISG--GNMRTGAILLSGYGRL 109

Query: 157 ADVRMGEQTH---------------SVAIRNG--------FESL----VFVQNSLVHMYA 189
             V    +                 S  ++NG        F+++    V   NS++  Y 
Sbjct: 110 GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYC 169

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               + DA  +FE M ER+LV+W  +I+G+       +A  +F +M  EG+ PD     S
Sbjct: 170 HSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-CGIIIAAQRVFREMRKR 308
             SA   LG L +         K G   +V +  A+L+ YS+   ++  A + F  M +R
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           N  +WST++  L+  G    A+ +++   +           G+    + CG +D+    F
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRIDDARILF 345

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +++ +     P +  +  ++    + G+V +A E    M    N + W  ++     +G 
Sbjct: 346 EQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNTISWAGMIAGYAQNGR 399

Query: 429 SA-----IAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           S      + E+ RS +L      +  +   SN+ A E
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/577 (40%), Positives = 343/577 (59%), Gaps = 13/577 (2%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPD--LGKYLI--YAIVSLSFPMSYAHNIF 100
           ++LQ C +S+     +Q+H   +  G+    PD  L   L+  YA   L   + +A  +F
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGL---GPDTVLATKLVDLYAACGL---VGHARRLF 120

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             +   N+F WN +IR YA      +A++LY  M   G++PD  TYP  LKA + L D+ 
Sbjct: 121 DGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLE 180

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G + H   +   +   +FV   LV MYA  G V DA  VF+ +  RD V WNS+I  + 
Sbjct: 181 TGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYG 240

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            NG+P EAL+L R+MA+ GV P   T+VS  SA A+  AL  GR  H + W+ G      
Sbjct: 241 QNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDK 300

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           +  +L+D Y+K G +  A+ +F ++ KR  VSW+ ++ G  ++G   EAL+LF +M +  
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEA 360

Query: 341 FV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
            V P  +TFVGVL AC+H GMV E   +F  M D Y I P ++HF C+VD+LG AG  ++
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEE 420

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AY+ I+ M M P++ IW  LL  C IH +  + E+A   L++LEP+ +G+YVLLSN+YA 
Sbjct: 421 AYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQ 480

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W     VR+ M    +KK  G S +EL  +   F +GD SHP++ EI+  L  +   
Sbjct: 481 SGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGL 540

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GY+P T  VF D+ ++EK + +  HSE++AIAF L++T  GT + V KNLRVC DC
Sbjct: 541 MSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDC 600

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H+ IKLIS++  REI++RD +R+HHF +G CSC+DYW
Sbjct: 601 HVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           H++      H Y  +L++      +  G Q H   + +G      +   LV +YAA G V
Sbjct: 54  HIASSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLV 113

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A ++F+ M +R++  WN +I  +A +G    A+ L+R M   GVEPD +T      AC
Sbjct: 114 GHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKAC 173

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A L  L  GR  H  V      +++ V   L+D Y+KCG +  A+ VF  +R R++V W+
Sbjct: 174 AALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWN 233

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY----FKR 370
           +++     NG   EAL L ++M   G  P   T V  + A +    +  G       ++R
Sbjct: 234 SMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRR 293

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             D    +        +VD+  ++G V Q    +   LM    V W  ++    +HGH
Sbjct: 294 GFDRQDKLKT-----SLVDMYAKSGWV-QVARVLFEQLMKRELVSWNAMICGYGMHGH 345


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 351/598 (58%), Gaps = 41/598 (6%)

Query: 58  KLKQVHAFSIRHGVPLN---NPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTW 111
           +LK +H  S+ HG+ +    + DL  +++ ++++    S     AH +F+++   ++ +W
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDL--FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSW 242

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N MI  +A    P  A+ L+ +M +  +KP+  T   +L A +K  D+  G    S    
Sbjct: 243 NAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIEN 302

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV--------------------- 210
           NGF   + + N+++ MY   G + DA  +F  MSE+D+V                     
Sbjct: 303 NGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCI 362

Query: 211 ----------AWNSVINGFASNGKPNEALTLFREMA-SEGVEPDGYTMVSLFSACAELGA 259
                     AWN++I+ +  NGKP  AL+LF EM  S+  +PD  T++    A A+LGA
Sbjct: 363 FDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGA 422

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           +  G   H Y+ K  ++ N ++  +LLD Y+KCG +  A  VF  + +++   WS ++  
Sbjct: 423 IDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGA 482

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           LA+ G GK AL+LF  M      P  VTF  +L AC+H G+V+EG   F++M+  YGI+P
Sbjct: 483 LAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVP 542

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           +I+H+ C+VD+ GRAGL+++A  +I+ M +PP A +W  LLGAC+ HG+  +AE+A   L
Sbjct: 543 QIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNL 602

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           L+LEP + G +VLLSN+YA    W  V  +R+ M    VKK P  S +++   V EF +G
Sbjct: 603 LELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVG 662

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFML 558
           D SHP +++I++ L EI++K K  GY P   N+    EE+   E +L+ HSEK+AIAF L
Sbjct: 663 DNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGL 722

Query: 559 VNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++TA   P+R+VKN+R+C DCH   KL+S++Y R+I++RDR RFHHF+ G CSC DYW
Sbjct: 723 ISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 220/418 (52%), Gaps = 37/418 (8%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +LKQ+HA  +R     +     K L  YAI S S  + YA N+F+ +  PN++ WNT+IR
Sbjct: 87  QLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSC-LIYAKNVFNQIPQPNLYCWNTLIR 145

Query: 117 GYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           GYA S++P  +  ++  M H     P+  T+PFL KA S+L  + +G   H + I+    
Sbjct: 146 GYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLS 205

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S +F+ NSL++ Y + G    A +VF  M  +D+V+WN++IN FA  G P++AL LF+EM
Sbjct: 206 SDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEM 265

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             + V+P+  TMVS+ SACA+   L  GR   +Y+   G ++++ +NNA+LD Y KCG I
Sbjct: 266 EMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCI 325

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLA-------------------------------VNG 324
             A+ +F +M +++ VSW+T++ G A                                NG
Sbjct: 326 NDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNG 385

Query: 325 FGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
             + AL LF EM++     P EVT +  L A +  G +D G      +K ++ I      
Sbjct: 386 KPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK-KHDINLNCHL 444

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
              ++D+  + G + +A E + + +   +  +W  ++GA  ++G    A    S++L+
Sbjct: 445 ATSLLDMYAKCGNLNKAME-VFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLE 501



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 27/286 (9%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMSE 206
           +L+ I +  +    +Q H+  +R       +  + L+  YA  +   +  A  VF  + +
Sbjct: 75  ILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQ 134

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRR 265
            +L  WN++I G+AS+  P ++  +F  M     E P+ +T   LF A + L  L LG  
Sbjct: 135 PNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSV 194

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  V K  LS ++ + N+L++FY   G    A RVF  M  ++ VSW+ ++   A+ G 
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGL 254

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG--IMPKIEH 383
             +AL LF+EME+    P  +T V VL AC+            K++  E+G  I   IE+
Sbjct: 255 PDKALLLFQEMEMKDVKPNVITMVSVLSACA------------KKIDLEFGRWICSYIEN 302

Query: 384 FG---------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            G          M+D+  + G +  A +   N +   + V W T+L
Sbjct: 303 NGFTEHLILNNAMLDMYVKCGCINDAKDLF-NKMSEKDIVSWTTML 347



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQ----VHAFSIRHGVPLNNPDLGK 80
           SL+H    S++     V   C     +CAS++         +H +  +H + LN      
Sbjct: 392 SLFHEMQLSKDAKPDEVTLIC----ALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATS 447

Query: 81  YL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
            L +YA       ++ A  +F  V+  +++ W+ MI   A       A++L+S M  + I
Sbjct: 448 LLDMYAKCG---NLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYI 504

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQ 164
           KP+  T+  +L A +    V  GEQ
Sbjct: 505 KPNAVTFTNILCACNHAGLVNEGEQ 529


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 327/552 (59%), Gaps = 32/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N  +W  MI GYA++     A+ L  ++H SG+ P   +   +  A S 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS- 214
           +  +  G Q HS+A++ G +   F  N+L+ MY    +++ A +VF  M  +D+V+WNS 
Sbjct: 432 IVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSF 491

Query: 215 ------------------------------VINGFASNGKPNEALTLFREMASEGVEPDG 244
                                         +I+ +A   + NEA+  F+ M  E   P+ 
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +  L   C  LGA  +G++ HT   K+G+   + V NAL+  Y KCG    ++R+F  
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDL 610

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M +R+  +W+T++ G A +G G+EA+++++ ME  G +P EVTFVG+L ACSH G+VDEG
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
           + +FK M  +YG+ P  EH+ CMVDLLGR G V+ A ++I +M + P+ VIW  LLGAC 
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IH ++ I + A   L ++EP ++G+YV+LSN+Y+    W  V EVR+ M ++ V K PG 
Sbjct: 731 IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S  ++ +++  F  GD+ H Q EEI A L E+   LK  GYVP TE V  DI+EE+KE +
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEK+A+A+ L+ T  G P++++KNLR+C DCH  IK +S V  R+I +RD +RFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910

Query: 605 FKDGHCSCRDYW 616
           F++G CSC D+W
Sbjct: 911 FRNGSCSCEDFW 922



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 20/391 (5%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  M  A N+F  + + N+ +W  MI GY    N   A +++ KMH  G+ PD   +   
Sbjct: 171 SLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD-ACKVFELMSERD 208
           L A+  L ++ + E    +A++ GFE  V +  +++++Y+    V D A K FE M ER+
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+++I   +  G+ + A+ ++        E D    ++  +A    G    GR    
Sbjct: 291 EYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTALIT-GLAQCGRIDDA 341

Query: 269 YVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            +    + + + V+ NAL+  Y + G++  A+ +F +M  RN +SW+ ++ G A NG  +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC- 386
           EAL L +E+   G +P   +   + +ACS+   ++ G +    +  + G   +   F C 
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGC--QFNSFACN 458

Query: 387 -MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            ++ + G+   ++ A +    M+   + V W + L A      + + + AR+T   +  +
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMV-TKDIVSWNSFLAALV---QNDLLDEARNTFDNMLSR 514

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
               +  + + YA+ ++        +TM  E
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCE 545



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 47/351 (13%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A   F  + + N +TW+TMI   +       A+ +Y +  V  I   T     L + 
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQC 335

Query: 153 ISKLADVR-MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             ++ D R + EQ          E +V   N+L+  Y   G V +A ++F+ M  R+ ++
Sbjct: 336 -GRIDDARILFEQIP--------EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS 386

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W  +I G+A NG+  EAL L +E+   G+ P   ++ S+F AC+ + AL  G + H+   
Sbjct: 387 WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV 446

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           KVG   N    NAL+  Y KC  +  A++VF  M  ++ VSW++ +  L  N    EA  
Sbjct: 447 KVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARN 506

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F  M        +V++  ++ A +H    +E    FK M  E+ +              
Sbjct: 507 TFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-------------- 548

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
                              PN+ I   LLG C   G S I +   +  ++L
Sbjct: 549 -------------------PNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 183/457 (40%), Gaps = 64/457 (14%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRH--------GVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           C  LL+ C S+         F++RH        G      DLG+            +  A
Sbjct: 3   CRVLLRRCLSAAAASSAAARFAVRHAHGELEVSGCSARIRDLGRL---------GRVGEA 53

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  +   +I  WN+MI  Y  +  P  A +LY    +SG   +  T   LL    +L
Sbjct: 54  REVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISG--GNMRTGAILLSGYGRL 109

Query: 157 ADVRMGEQTH---------------SVAIRNG--------FESL----VFVQNSLVHMYA 189
             V    +                 S  ++NG        F+++    V   NS++  Y 
Sbjct: 110 GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYC 169

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               + DA  +FE M ER+LV+W  +I+G+       +A  +F +M  EG+ PD     S
Sbjct: 170 HSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-CGIIIAAQRVFREMRKR 308
             SA   LG L +         K G   +V +  A+L+ YS+   ++  A + F  M +R
Sbjct: 230 ALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIER 289

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           N  +WST++  L+  G    A+ +++   +           G+    + CG +D+    F
Sbjct: 290 NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRIDDARILF 345

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +++ +     P +  +  ++    + G+V +A E    M    N + W  ++     +G 
Sbjct: 346 EQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNTISWAGMIAGYAQNGR 399

Query: 429 SA-----IAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           S      + E+ RS +L      +  +   SN+ A E
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 334/559 (59%), Gaps = 17/559 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           VH   ++ G   ++     Y++ +++ L      +  A  +F+     ++ +WN MI GY
Sbjct: 217 VHTHVVKSGFECDS-----YIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGY 271

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +      A  ++ +M    +  D  ++  ++   + +  +   ++           S  
Sbjct: 272 VKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSW- 326

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              NS++  +   G+V+DA  +F  M  RD+V+WNS++  +A  GKPNEAL LF +M + 
Sbjct: 327 ---NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+P   T+VSL SACA LGAL  G   HTY+    +  N  V  AL+D Y+KCG I  A
Sbjct: 384 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 443

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  M  ++ ++W+T++ G+A++G  KEA +LFKEM+  G  P ++TFV +L ACSH 
Sbjct: 444 TQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 503

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           GMVDEG      M   YGI PK+EH+GC++DLL RAG +++A E I  M M PN      
Sbjct: 504 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA 563

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG C IHG+  + E+    L+ L+P HSG Y+LLSN+YA  ++W + ++VR  M    +
Sbjct: 564 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 623

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIE 537
            K PG S++EL   V  F  GD SHP++ +I+  L EI  +LK   GY   T NV  D+E
Sbjct: 624 SKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDME 683

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE+KE AL+ HSEK+AIA+ L++      +R+VKNLRVC DCH  IKLISKVY REI+VR
Sbjct: 684 EEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVR 743

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           DR+RFHHF+DG CSC D+W
Sbjct: 744 DRNRFHHFEDGECSCLDFW 762



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 209/409 (51%), Gaps = 18/409 (4%)

Query: 22  RVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           +++S    TP    NP ++   + ++L   C + +H LKQVHA  I H    N+P     
Sbjct: 78  KLQSSMSRTPNPLTNPPSN--PQILSLFNPCKTLRH-LKQVHAQIITHH---NSPFQLSA 131

Query: 82  LIYAIVSLSFP--MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
           L        FP  ++YA  IF H+Q+P    +N++IR  + S  PL A+ LY  M  SG+
Sbjct: 132 LASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL 191

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           KPD  TYPF++KA ++ +    G   H+  +++GFE   ++ +SL+H+YA    +  A +
Sbjct: 192 KPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQ 251

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           +F L S RD+V+WN++I+G+  + +   A  +F  M       D  +  ++ +  A +G 
Sbjct: 252 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCR----DVISWNTMINGYAIVGK 307

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           +   +R    ++      N+   N++L  + KCG +  A  +F EM  R+ VSW++++  
Sbjct: 308 IDEAKR----LFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 363

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            A  G   EAL LF +M   G  P E T V +L AC+H G +D+G      + D    + 
Sbjct: 364 YAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 423

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            I     +VD+  + G +  A + + N +   + + W T++    IHG+
Sbjct: 424 SIVGTA-LVDMYAKCGKISLATQ-VFNAMESKDVLAWNTIIAGMAIHGN 470


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/561 (39%), Positives = 344/561 (61%), Gaps = 13/561 (2%)

Query: 62  VHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +H + I+HG+  +    N  +  Y  +        +  A   F  +   ++ +WN++I  
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFG------NLEDARKAFQQMFITDVVSWNSIIAA 391

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ES 176
           Y ++ +P+ A   + KM ++G +PD  T   L   +++  D +     H   +R G+   
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V + N++V MYA  G +  A KVFE++  +D+++WN++I G+A NG  +EA+ +++ M 
Sbjct: 452 DVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMME 511

Query: 237 S-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             + + P+  T VS+  A A +GAL  G R H  V K  L  +V V   L+D Y KCG +
Sbjct: 512 ECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRL 571

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + A  +F ++ + ++V+W+ ++    ++G  ++ L+LF EM   G  P  VTFV +L AC
Sbjct: 572 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 631

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G V+EG   F+ M+ EYGI P ++H+GCMVDLLGRAG ++ AY +I++M + P+A I
Sbjct: 632 SHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASI 690

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC IHG+  + + A   L +++ K+ G YVLLSN+YA   +W  V +VR    +
Sbjct: 691 WGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARE 750

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             +KKTPG S +E+  +V  F+ G++SHP+ +EI+  L  +T K+K  GY+P    V  D
Sbjct: 751 RGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQD 810

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EE+EKE  L+ HSE++AIAF +++T P +P+R+ KNLRVC DCH A K IS++  REIV
Sbjct: 811 VEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD +RFHHFKDG CSC DYW
Sbjct: 871 VRDSNRFHHFKDGICSCGDYW 891



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 5/329 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE-LYSKMHVSGIKPDTHTYPFLLK 151
           +S +   F  +   +++TWN+MI  Y  + +   A+   Y  + VS I+PD +T+P +LK
Sbjct: 167 VSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 226

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D   G + H  A + GF+  VFV  SL+HMY+ FG    A  +F+ M  RD+ +
Sbjct: 227 ACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+G   NG   +AL +  EM  EG++ +  T+VS+   C +LG ++     H YV 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL  ++ V+NAL++ Y+K G +  A++ F++M   + VSW++++     N     A  
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F +M++ GF P  +T V +    +         S    +     +M  +     +VD+ 
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            + GL+  A++  + +L+  + + W TL+
Sbjct: 464 AKLGLLDSAHKVFEIILV-KDVISWNTLI 491



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 14/262 (5%)

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ +  G    +F+   LV++YA  G V  +   F+ + ++D+  WNS+I+ +  NG  
Sbjct: 139 HALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHF 198

Query: 226 NEALTLFRE--MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +EA+  F +  + SE + PD YT   +  AC   G L  GRR H + +K+G   NV V  
Sbjct: 199 HEAIGCFYQLLLVSE-IRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAA 254

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  YS+ G    A+ +F +M  R+  SW+ ++ GL  NG   +AL++  EM + G   
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 344 GEVTFVGVLYACSHCGMVDEGF---SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             VT V +L  C   G +        Y  +   E+ +         ++++  + G ++ A
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVS----NALINMYAKFGNLEDA 370

Query: 401 YEYIQNMLMPPNAVIWRTLLGA 422
            +  Q M +  + V W +++ A
Sbjct: 371 RKAFQQMFI-TDVVSWNSIIAA 391


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/539 (39%), Positives = 326/539 (60%), Gaps = 15/539 (2%)

Query: 93   MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
            M  + ++F  +   +  +WNTMI G   +    +A+EL  KM  +G   +  T+   L  
Sbjct: 470  MQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVL 529

Query: 153  ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER----- 207
             S L+ + +G+Q H+  ++ G     FV+NSL+ MY   G ++ A  +F+ + +      
Sbjct: 530  ASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMN 589

Query: 208  ----------DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
                      + V+W+S+++G+  NG+  +AL  F  M    VE D +T+ S+ SACA  
Sbjct: 590  SEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASA 649

Query: 258  GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            G L LGR+ H Y+ K+G   +V + ++++D Y KCG +  A  +F + + RN V W++++
Sbjct: 650  GVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMI 709

Query: 318  VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
             G A++G G+EA+ LF+ M   G  P EV+FVGVL ACSH G+++EG  YF+ M++ YGI
Sbjct: 710  SGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGI 769

Query: 378  MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
             P  EHF CMVDL GRAG + +  E+I N  +   + +WR+ L +C +H +  +      
Sbjct: 770  RPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCK 829

Query: 438  TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
             LL+LEP  +G Y+L S++ A E RW    ++R  M +  VKK P  S ++L N+V  F 
Sbjct: 830  KLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFV 889

Query: 498  MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
            MGDRSHPQ  +I++ L E+  +LK  GY      V  D+E+E+++  L YHSEK+AIA+ 
Sbjct: 890  MGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYG 949

Query: 558  LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +++TAPGTP+RV+KNLRVC DCH  IK  S++  REI++RD  RFHHFK GHCSC DYW
Sbjct: 950  IISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 181/389 (46%), Gaps = 67/389 (17%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-S 154
           AH +F  +   ++F+W  +I G+A        + L++KM   G+ P+  T   +LK+  S
Sbjct: 340 AHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSS 399

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---AFGHVKDACKVFELMSERDLVA 211
            + D R+G+  H   +RNG +    + NS++  Y     FG+ +   K+F LM+E+D V+
Sbjct: 400 NVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE---KLFGLMAEKDTVS 456

Query: 212 WNSVINGFASNGKPNEALTLFREM-----ASEGVEPDG--------------YTMVSLFS 252
           WN +++ +   G   +++ LFR++     AS     DG              Y MV+   
Sbjct: 457 WNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGP 516

Query: 253 A------------CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           A             + L  L LG++ HT V KVG+ D+  V N+L+D Y KCG +  A  
Sbjct: 517 AFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASV 576

Query: 301 VFREMRKRN---------------AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +F+ + + +               +VSWS++V G   NG  ++AL+ F  M        +
Sbjct: 577 IFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDK 636

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVDLLGRAGLVKQ 399
            T   V+ AC+  G+++ G       +  +G + KI H         ++D+  + G +  
Sbjct: 637 FTLTSVVSACASAGVLELG-------RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLND 689

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           A+  I N     N V+W +++  C +HG 
Sbjct: 690 AW-LIFNQAKDRNVVLWTSMISGCALHGQ 717



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 111/203 (54%), Gaps = 6/203 (2%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRM---GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           G    ++ YP L    S  +D       E  H+  I+NG   +    N L+++YA   ++
Sbjct: 280 GFSLSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIR--GNHLLNLYAKSQNL 337

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           + A K+FE + + D+ +W  +I+GFA  G   + L LF +M  +GV P+ +T+  +  +C
Sbjct: 338 EQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSC 397

Query: 255 AE-LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           +  +    +G+  H ++ + GL  +  +NN++LD+Y KC     A+++F  M +++ VSW
Sbjct: 398 SSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSW 457

Query: 314 STLVVGLAVNGFGKEALELFKEM 336
           + ++      G  +++++LF+++
Sbjct: 458 NIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            N LL+ Y+K   +  A ++F E+ + +  SW+ L+ G A  G   + L LF +M+  G 
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 342 VPGEVTFVGVLYACS 356
            P + T   VL +CS
Sbjct: 384 CPNQFTLSIVLKSCS 398


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 355/574 (61%), Gaps = 10/574 (1%)

Query: 47  TLLQVCASSKHK--LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++++ CAS K    ++ +H  +++ G+  N   L   ++   ++    +  A ++FS + 
Sbjct: 309 SVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV--ALTKCKEIDDAFSLFSLMH 366

Query: 105 D-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++ +W  MI GY ++ +   AV L+S M   G+KP+  TY  +L     +       
Sbjct: 367 GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHAVFIS 422

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H+  I+  +E    V  +L+  +   G++ DA KVFEL+  +D++AW++++ G+A  G
Sbjct: 423 EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAG 482

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSAC-AELGALALGRRAHTYVWKVGLSDNVNVN 282
           +  EA  +F ++  EG++P+ +T  S+ +AC A   ++  G++ H Y  K+ L++ + V+
Sbjct: 483 ETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVS 542

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           ++L+  Y+K G I +A  +F+  ++R+ VSW++++ G A +G  K+ALE+F+EM+     
Sbjct: 543 SSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLE 602

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
              +TF+GV+ AC+H G+V +G +YF  M +++ I P +EH+ CM+DL  RAG++ +A +
Sbjct: 603 VDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMD 662

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
            I  M  PP A +WR +L A  +H +  + ++A   ++ LEP+HS  YVLLSN+YA    
Sbjct: 663 IINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGN 722

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W     VR+ M K RVKK PG+S +E+ N+ + F  GD SHP ++ I++ L+E+  +L+ 
Sbjct: 723 WHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRD 782

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GY P T  VF DIE+E+KE  LS+HSE++AIAF L+ T P  P+++VKNLRVC DCH  
Sbjct: 783 VGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSF 842

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IKL+S V  R IVVRD +RFHHFK G CSC DYW
Sbjct: 843 IKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 149/283 (52%), Gaps = 11/283 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           +A  +F      ++   N ++  Y+       A+ L+  ++ SG+ PD++T   +L   +
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              +  +GEQ H   ++ G    + V NSLV MY   G+V+D  +VF+ M +RD+V+WNS
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++ G++ N   ++   LF  M  EG  PD YT+ ++ +A A  GA+A+G + H  V K+G
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG 233

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                 V N+L+   SK G++  A+ VF  M  +++VSW++++ G  +NG   EA E F 
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 335 EMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFS 366
            M++ G  P   TF  V+ +C+           HC  +  G S
Sbjct: 294 NMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLS 336



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 5/308 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L VCA S +    +QVH   ++ G+ +++  +G  L+  + + +  +     +F  + D
Sbjct: 108 VLSVCAGSFNGTVGEQVHCQCVKCGL-VHHLSVGNSLV-DMYTKTGNVRDGRRVFDEMGD 165

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ +WN+++ GY+ +       EL+  M V G +PD +T   ++ A++    V +G Q 
Sbjct: 166 RDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQI 225

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ ++ GFE+   V NSL+ M +  G ++DA  VF+ M  +D V+WNS+I G   NG+ 
Sbjct: 226 HALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQD 285

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA   F  M   G +P   T  S+  +CA L  L L R  H    K GLS N NV  AL
Sbjct: 286 LEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTAL 345

Query: 286 LDFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +   +KC  I  A  +F  M   ++ VSW+ ++ G   NG   +A+ LF  M   G  P 
Sbjct: 346 MVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPN 405

Query: 345 EVTFVGVL 352
             T+  +L
Sbjct: 406 HFTYSTIL 413


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/617 (39%), Positives = 355/617 (57%), Gaps = 56/617 (9%)

Query: 47  TLLQVCASSKHKLKQVHA---FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +L+   + S+ +L+++HA    S R   P ++ D       A ++ S  +SYA  +    
Sbjct: 21  SLVAASSQSQFRLREIHAHLLVSGRLASPSHHADF-----VASLASSSHLSYARLLLPQ- 74

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI---------- 153
           +   +   N ++R  A    P LA   + ++ ++   PD +++ FL++A           
Sbjct: 75  RPATLLAHNGLLRALARGPCPGLAFAAFRELPLA---PDHYSFTFLVRAATSLAAAASAT 131

Query: 154 ---SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV---------------- 194
              + +A   +    H+ A ++G  +   VQ+  V MYAA G V                
Sbjct: 132 PVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVV 191

Query: 195 ---------------KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
                            A ++F+ M +RD VAWN+++ G+   G+  EAL LF EM   G
Sbjct: 192 CVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAG 251

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V     T+VS+ +ACA++GAL  G   H+YV   G+  +V +  AL+D YSKCG++  + 
Sbjct: 252 VAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSM 311

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF  MR+RN  +W++ + GLA+NG G+E LELFK ME  G  P  VTFV VL  CS  G
Sbjct: 312 EVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAG 371

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG + F  MKD++ + P +EH+GCMVDL GRAG +  A ++I +M + P+  +W  L
Sbjct: 372 LVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGAL 431

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L A  IH +  + + A   L ++E K+   +VLLSN+YA    W  V +VR  M  + VK
Sbjct: 432 LNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVK 491

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S +E+  +V EFF+G +SHP+ ++I  MLAE++ +L+L+GY   T+ V  DIEEE
Sbjct: 492 KMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEE 551

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE A+S HSEK+A+AF L+     T +R+VKNLRVC DCH   KLISKV+ REIV+RDR
Sbjct: 552 EKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDR 611

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHFK G CSCRDYW
Sbjct: 612 NRFHHFKHGACSCRDYW 628


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 316/524 (60%), Gaps = 3/524 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F      ++ +WNT++ G     +   A+    +M  +G+    +TY  +      
Sbjct: 211 ATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGL 270

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS---ERDLVAW 212
           L+   +G Q H   +    E   FV  SL+ MY   G ++ A  +F+  S   E    AW
Sbjct: 271 LSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAW 330

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           ++++ G+  NG+  EAL  FR M  EGV    + + S+ SACA  G +  GR+ H +V K
Sbjct: 331 STMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEK 390

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           +G   +  + +A++D YSK G +  A R+FR  + +N   W+T++   A +G G+ ALE+
Sbjct: 391 LGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEI 450

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F  M+    +P E+T V VL ACSH G+V +G+ YF  M++EYGI+P  EH+ CMVDL G
Sbjct: 451 FSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYG 510

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL+ +A  +I+   +   AV+W+TLL AC +H H   A++A   L+QLE   +G YVL
Sbjct: 511 RAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVL 570

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SN+YA   +WL+  ++R +M + RV+K PG S + L N V  F   D SHP++ EI+A 
Sbjct: 571 MSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAY 630

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++ ++LK  GY  RT+ V  DIEEE++E +L +HSEK+AIAF +++T  GT +R+ KN
Sbjct: 631 LEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKN 690

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK I++   REIVVRD  RFHHFKDG CSC D+W
Sbjct: 691 LRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 189/439 (43%), Gaps = 63/439 (14%)

Query: 36  NPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           +P T +      LL    +   K K +H  S+R  VP ++             ++  +  
Sbjct: 30  SPQTFIFHSSARLLPEAGACAAK-KAIHRQSVRGCVPSSSV------------IARGLHN 76

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTHTYPFLLKAI 153
           AH +F      ++  W ++I G A        +  +++M        P+      +L+  
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA----------AFGHV--KD----- 196
           + L DV  G + H   +R+G    V + N+++ MYA          AFG +  KD     
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 197 --------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242
                         A ++F+  S RD+ +WN++++G   +G   EAL   ++M   GV  
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
             YT   +F+    L +  LGR+ H  V    L ++  V  +L+D Y KCG + +A  +F
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 303 ---REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
               +  +    +WST+V G   NG  +EALE F+ M   G   G+     V  AC++ G
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEH------FGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           MV++G       +  +G + K+ H         +VD+  ++G ++ A    ++     N 
Sbjct: 377 MVEQG-------RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSA-QTKNV 428

Query: 414 VIWRTLLGACTIHGHSAIA 432
            +W T+L +   HG   +A
Sbjct: 429 ALWTTMLCSYASHGQGRMA 447



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 40/212 (18%)

Query: 24  KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI 83
           + L    PA Q   +TSV   C       A    + +QVH F  + G   + P     L 
Sbjct: 352 RMLREGVPAGQ-FILTSVASACAN-----AGMVEQGRQVHGFVEKLGHRFDAP-----LA 400

Query: 84  YAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
            AIV +   S  +  A  IF   Q  N+  W TM+  YA      +A+E++S+M    I 
Sbjct: 401 SAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIM 460

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ------------NSLVHMY 188
           P+  T   +L A S           HS  + +G+     +Q            N +V +Y
Sbjct: 461 PNEITLVAVLSACS-----------HSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLY 509

Query: 189 AAFGHVKDACKVF--ELMSERDLVAWNSVING 218
              G + D  K F  E     + V W ++++ 
Sbjct: 510 GRAG-LLDKAKNFIEENKISHEAVVWKTLLSA 540


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 321/526 (61%), Gaps = 3/526 (0%)

Query: 93  MSYAHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           +  A  +F  +  P   I +W  ++  YA++  P+ A+E++S M    +KPD      +L
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVL 229

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A + L D++ G   H+  ++ G E    +  SL  MYA  G V  A  +F+ M   +L+
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            WN++I+G+A NG   EA+ +F EM ++ V PD  ++ S  SACA++G+L   R  + YV
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            +    D+V +++AL+D ++KCG +  A+ VF     R+ V WS ++VG  ++G  +EA+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            L++ ME GG  P +VTF+G+L AC+H GMV EG+ +F  M D + I P+ +H+ C++DL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDL 468

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LGRAG + QAYE I+ M + P   +W  LL AC  H H  + E A   L  ++P ++G Y
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHY 528

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
           V LSNLYA  + W  V EVR  M ++ + K  G S VE+  R+  F +GD+SHP+ EEI 
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIE 588

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             +  I  +LK  G+V   +    D+ +EE E+ L  HSE+IAIA+ L++T  GTP+R+ 
Sbjct: 589 RQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR C +CH A KLISK+  REIVVRD +RFHHFKDG CSC DYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 220/409 (53%), Gaps = 9/409 (2%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           A+ K +LKQ+HA  +  G+  +   + K LI+A  S    +++A  +F  +  P IF WN
Sbjct: 31  ATHKAQLKQIHARLLVLGLQFSGFLITK-LIHASSSFG-DITFARQVFDDLPRPQIFPWN 88

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +IRGY+ + +   A+ +YS M ++ + PD+ T+P LLKA S L+ ++MG   H+   R 
Sbjct: 89  AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRL 148

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALT 230
           GF++ VFVQN L+ +YA    +  A  VFE   + ER +V+W ++++ +A NG+P EAL 
Sbjct: 149 GFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALE 208

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           +F  M    V+PD   +VS+ +A   L  L  GR  H  V K+GL    ++  +L   Y+
Sbjct: 209 IFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYA 268

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+ +F +M+  N + W+ ++ G A NG+ +EA+++F EM      P  ++   
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 351 VLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            + AC+  G +++  S ++ + + +Y     +     ++D+  + G V+ A   + +  +
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGA-RLVFDRTL 385

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
             + V+W  ++    +HG +  A I+    ++    H  D   L  L A
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREA-ISLYRAMERGGVHPNDVTFLGLLMA 433



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 33/319 (10%)

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
           A+PLL          SGI  D+  Y  L+ + +  A ++   Q H+  +  G +   F+ 
Sbjct: 8   ASPLLYTN-------SGIHSDSF-YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLI 56

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
             L+H  ++FG +  A +VF+ +    +  WN++I G++ N    +AL ++  M    V 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD +T   L  AC+ L  L +GR  H  V+++G   +V V N L+  Y+KC  + +A+ V
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 302 FR--EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           F    + +R  VSW+ +V   A NG   EALE+F  M      P  V  V VL A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNA----- 231

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMV--DLL-------GRAGLVKQAYEYIQNMLMP 410
                F+  + +K    I   +   G  +  DLL        + G V  A + + + +  
Sbjct: 232 -----FTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA-KILFDKMKS 285

Query: 411 PNAVIWRTLLGACTIHGHS 429
           PN ++W  ++     +G++
Sbjct: 286 PNLILWNAMISGYAKNGYA 304


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 340/627 (54%), Gaps = 75/627 (11%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+ VH+  I   +  N+  LG  L+ A  SL   ++ A  +F  + + N+   N MIR Y
Sbjct: 58  LRTVHSRIILEDLRCNSS-LGVKLMRAYASLK-DVASARKVFDEIPERNVIIINVMIRSY 115

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             +      V+++  M    ++PD +T+P +LKA S    + +G + H  A + G  S +
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 179 FVQ-------------------------------NSLVHMYAAFGHVKDACKV------- 200
           FV                                NSLV  YA      DA +V       
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 201 ------------------------------FELMSERDLVAWNSVINGFASNGKPNEALT 230
                                         F  M ++ LV+WN +I  +  N  P EA+ 
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+  M ++G EPD  ++ S+  AC +  AL+LG++ H Y+ +  L  N+ + NAL+D Y+
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 355

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG +  A+ VF  M+ R+ VSW+ ++     +G G +A+ LF +++  G VP  + FV 
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVT 415

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
            L ACSH G+++EG S FK M D Y I P++EH  CMVDLLGRAG VK+AY +IQ+M M 
Sbjct: 416 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           PN  +W  LLGAC +H  + I  +A   L QL P+ SG YVLLSN+YA   RW  V  +R
Sbjct: 476 PNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIR 535

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M  + +KK PG S VE+   +  F +GDRSHPQ++EI+  L  + KK+K  GYVP +E
Sbjct: 536 NIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSE 595

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTA-----PGTPVRVVKNLRVCADCHLAIKL 585
           +   D+EEE+KE  L+ HSEK+AI F L+NT          +R+ KNLR+C DCH+A KL
Sbjct: 596 SALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKL 655

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSC 612
           IS++ SREI++RD +RFH F+ G CSC
Sbjct: 656 ISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 7/280 (2%)

Query: 148 FLL-KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           FLL + +    D+R     HS  I         +   L+  YA+   V  A KVF+ + E
Sbjct: 43  FLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPE 102

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           R+++  N +I  + +NG   E + +F  M    V PD YT   +  AC+  G + +GR+ 
Sbjct: 103 RNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKI 162

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H    KVGLS  + V N L+  Y KCG +  A+ V  EM +R+ VSW++LVVG A N   
Sbjct: 163 HGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRF 222

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
            +ALE+ +EME         T   +L A S+     E   Y K M  + G    +  +  
Sbjct: 223 DDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNV 279

Query: 387 MVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGAC 423
           M+ +  +  +  +A E    M      P+AV   ++L AC
Sbjct: 280 MIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/521 (41%), Positives = 322/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N  ++ T+I+GYAES   L A+EL+ ++H   + P+  T+  +L+A + 
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACAT 150

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  + +G Q H   I+ G  S VFV N+L+ +YA  G ++++ ++F     R+ V WN+V
Sbjct: 151 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 210

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G    G   +AL LF  M    V+    T  S   ACA L AL  G + H+   K   
Sbjct: 211 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTF 270

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V NAL+D Y+KCG I  A+ VF  M K++ VSW+ ++ G +++G G+EAL +F +
Sbjct: 271 DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDK 330

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P ++TFVGVL AC++ G++D+G +YF  M  ++GI P IEH+ CMV LLGR G
Sbjct: 331 MQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGG 390

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I  +   P+ ++WR LLGAC IH    +  I+   +L++EP+    +VLLSN
Sbjct: 391 HLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSN 450

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  +RW NV  VR+ M ++ VKK PG S +E    V  F +GD SHP+   I+ ML  
Sbjct: 451 MYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEW 510

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K K  GY+P    V  D+E+EEKE  L  HSE++A++F ++ T  G+P+R++KNLR+
Sbjct: 511 LHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRI 570

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK ISKV  REIVVRD +RFHHF++G CSC DYW
Sbjct: 571 CVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 152/293 (51%), Gaps = 3/293 (1%)

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           HVS  + ++H Y   L+   +  +   G+  H   ++ G    +F  N L++MY     +
Sbjct: 30  HVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFL 89

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            DA K+F+ M ER+ +++ ++I G+A + +  EA+ LF  +  E V P+ +T  S+  AC
Sbjct: 90  CDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQAC 148

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A +  L LG + H +V K+GL  +V V+NAL+D Y+KCG +  +  +F E   RN V+W+
Sbjct: 149 ATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWN 208

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           T++VG    G G++AL LF  M        EVT+   L AC+    ++ G      +  +
Sbjct: 209 TVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVK 267

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                 I     ++D+  + G +K A   + +++   + V W  ++   ++HG
Sbjct: 268 TTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMHG 319



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++LQ CA+ +  +   Q+H   I+ G  L++       +  + +    M  +  +F+   
Sbjct: 143 SVLQACATMEGLNLGNQIHCHVIKIG--LHSDVFVSNALMDVYAKCGRMENSMELFAESP 200

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N  TWNT+I G+ +  +   A+ L+  M    ++    TY   L+A + LA +  G Q
Sbjct: 201 HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ 260

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS+ ++  F+  + V N+L+ MYA  G +KDA  VF+LM+++D V+WN++I+G++ +G 
Sbjct: 261 IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL 320

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
             EAL +F +M    V+PD  T V + SACA  G L  G+
Sbjct: 321 GREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQ 360


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/524 (41%), Positives = 320/524 (61%), Gaps = 4/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +   W+TM+ G+  +  P+ A+ +YS+M   G+  D      +++A
Sbjct: 158 MEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQA 217

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                + R+G   H   +R+     V    SLV MYA  GH+  AC+VF +M  R+ V W
Sbjct: 218 CMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTW 277

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+GFA NG+  EAL LFRE+ ++G++P  + +VS   ACA +G L LG+  H ++ +
Sbjct: 278 SALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILR 337

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L     +  A+LD YSKCG + +A+++F ++  R+ V W+ ++     +G G +AL L
Sbjct: 338 -RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALAL 396

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+E+   G  P   TF  +L A SH G+V+EG  +F RM  E+GI P  +H+ C+VDLL 
Sbjct: 397 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLA 456

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A + + +M   P   IW  LL  C  +    + E     +L+L P+  G   L
Sbjct: 457 RSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLAL 516

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  ++W  V+E+R+ M     KK PG+SL+E+      F M D+SHPQ  EI  M
Sbjct: 517 VSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKM 576

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           +A++  +++  GYVPRTE V+ D++E++    LSYHSE++AIAF L+NT+PGT + ++KN
Sbjct: 577 VAKLNSEMRKLGYVPRTEFVYHDLDEDQ---LLSYHSERLAIAFGLLNTSPGTRLVIIKN 633

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  REIVVRD  RFHHFKDG CSC DYW
Sbjct: 634 LRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 177/353 (50%), Gaps = 16/353 (4%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WN ++  ++ +  P  A+ ++  +  S  +P++ T+   L A ++L D+   E     A 
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSA-RPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
             G+   VFV ++L+H+Y+  G +++A +VF+ M  +D VAW++++ GF + G+P EAL 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           ++  M   GV  D   MV +  AC   G   +G   H  + +  +  +V    +L+  Y+
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA 254

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           K G +  A +VFR M  RN V+WS L+ G A NG   EAL+LF+E++  G  P     V 
Sbjct: 255 KNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVS 314

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-----VDLLGRAGLVKQAYEYIQ 405
            L AC+  G       + K  K  +G + +   + C+     +D+  + G ++ A +   
Sbjct: 315 ALLACASVG-------FLKLGKSIHGFILRRLEWQCILGTAVLDMYSKCGSLESARKLF- 366

Query: 406 NMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           N L   + V+W  ++  C  H  GH A+A         ++P H+    LLS L
Sbjct: 367 NKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 419



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 6/248 (2%)

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN +++  +  G P  AL +FR + S    P+  T     +ACA LG L          +
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSA-RPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             G   +V V +ALL  YS+CG +  A RVF  M +++ V+WST+V G    G   EAL 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           ++  M   G    EV  VGV+ AC   G    G S   R+      M  +     +V + 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTS-LVSMY 253

Query: 392 GRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
            + G +  A +  +  +MP  N V W  L+     +G  A+  +     LQ +      +
Sbjct: 254 AKNGHLDVACQVFR--MMPYRNDVTWSALISGFAQNGR-AVEALDLFRELQADGLQPCSW 310

Query: 451 VLLSNLYA 458
            L+S L A
Sbjct: 311 ALVSALLA 318


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 349/608 (57%), Gaps = 10/608 (1%)

Query: 12  SYEEISDLPCRVKSLYHSTPAS-QENPIT--SVVRKCITLLQVCASSKHKLKQVHAFSIR 68
           +Y +I DL       Y    A  + N  T   ++R C    ++        +Q+H+ +I+
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG-----EQIHSLTIK 373

Query: 69  HGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAV 128
           +G   +    G  ++  + S    +  A  I   +++ ++ +W +MI GY +      A+
Sbjct: 374 NGFQSDMYVSG--VLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 129 ELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188
           E + +M   GI PD       + A + +  V  G Q H+    +G+ + V + N LV++Y
Sbjct: 432 ETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLY 491

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
           A  G  K+A   FE +  ++ + WN +I+GFA +G   EAL +F +M   G + + +T V
Sbjct: 492 ARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFV 551

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S  SA A L  +  G++ H  V K G +    ++NAL+  Y KCG I  A+  F EM KR
Sbjct: 552 SSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKR 611

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           N VSW+T++   + +G G EAL+LF +M+  G  P +VTFVGVL ACSH G+V+EG  YF
Sbjct: 612 NEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYF 671

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           K M +E+GI P+ +H+ C+VD+LGRAG + +A  +++ M +P ++++WRTLL AC +H +
Sbjct: 672 KSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKN 731

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             I E A   LL+LEP  S  YVLLSN YA   +W +  ++R+ M    V+K PG S +E
Sbjct: 732 LEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIE 791

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           + N V  FF+GDR HP  ++I+  L+ +  +L   GY     ++F + E+E K+     H
Sbjct: 792 VKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVH 851

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+AF L++     P+RV+KNLRVC DCH  +K  S V  REIV+RD  RFHHF +G
Sbjct: 852 SEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNG 911

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 912 SCSCGDYW 919



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 203/383 (53%), Gaps = 6/383 (1%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +LL  C++     K KQ+H++ ++ G+ L+    G  L   + S    +  A  IF    
Sbjct: 249 SLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGD--IEEALQIFDSGD 306

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+  WN M+  Y +  +   + +++ +M  +G++P+  TYP +L+  +   ++ +GEQ
Sbjct: 307 RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ 366

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS+ I+NGF+S ++V   L+ MY+ +G +  A ++ +++ E+D+V+W S+I G+  +  
Sbjct: 367 IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEF 426

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  F+EM + G+ PD   + S  SACA + A+  G + H  V+  G S +V++ N 
Sbjct: 427 CKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNG 486

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+  Y++CGI   A   F  +  +  ++W+ L+ G A +G  +EAL++F +M+  G    
Sbjct: 487 LVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYN 546

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
             TFV  + A ++   + +G     R+  + G   + E    ++ L G+ G ++ A    
Sbjct: 547 VFTFVSSISASANLADIKQGKQIHARVI-KTGYTSETEISNALISLYGKCGSIEDAKMDF 605

Query: 405 QNMLMPPNAVIWRTLLGACTIHG 427
             M    N V W T++  C+ HG
Sbjct: 606 FEM-TKRNEVSWNTIITCCSQHG 627



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 196/405 (48%), Gaps = 12/405 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  T+NT+I G+A+  +   A+ ++ +M +SG+ PD+ T   LL A S 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D+R G+Q HS  ++ G      ++ SL+ +Y   G +++A ++F+     ++V WN +
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           +  +       ++  +F  M + GV P+ +T   +   C   G + LG + H+   K G 
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V+  L+D YSK G +  AQR+   + +++ VSW++++ G   + F KEALE FKE
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P  +     + AC+    V +G     R+    G    +  +  +V L  R G
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-GYSADVSIWNGLVYLYARCG 495

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS--GDYVLL 453
           + K+A+   +  +     + W  L+        S + E A    ++++   +    +  +
Sbjct: 496 ISKEAFSSFE-AIEHKEGITWNGLISG---FAQSGLYEEALKVFMKMDQAGAKYNVFTFV 551

Query: 454 SNLYAYEQRWLNVQEVRR-TMVKERVKKTPGHSLVELGNRVFEFF 497
           S++ A      N+ ++++   +  RV KT   S  E+ N +   +
Sbjct: 552 SSISASA----NLADIKQGKQIHARVIKTGYTSETEISNALISLY 592



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 184/381 (48%), Gaps = 7/381 (1%)

Query: 49  LQVCASSKHK---LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           L+ C  S  +   + ++HA +I  G+      +G  LI       F +  A  +F  +  
Sbjct: 48  LRACRGSGRRWPLVPEIHAKAIICGLS-GYRIIGNLLIDLYAKKGF-VRRARRVFEELSV 105

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            +  +W  ++ GYA++     AV LY +MH SG+ P  +    +L A +K    ++G   
Sbjct: 106 RDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLI 165

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H    + GF S  FV N+L+ +Y      + A +VF  M   D V +N++I+G A  G  
Sbjct: 166 HVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHG 225

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
           + AL +F EM   G+ PD  T+ SL +AC+ +G L  G++ H+Y+ K G+S +  +  +L
Sbjct: 226 DRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSL 285

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           LD Y K G I  A ++F    + N V W+ ++V         ++ ++F  M   G  P +
Sbjct: 286 LDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNK 345

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            T+  +L  C+H G +  G      +  + G    +   G ++D+  + G + +A + I 
Sbjct: 346 FTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA-QRIL 403

Query: 406 NMLMPPNAVIWRTLLGACTIH 426
           +M+   + V W +++     H
Sbjct: 404 DMIEEKDVVSWTSMIAGYVQH 424


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 343/558 (61%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA++I++G   +N  +G  LI  + +    MSY    F  +   ++ +W T   GYA
Sbjct: 281 KEIHAYAIKNGFD-SNILVGNTLI-DMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++   L A+EL  ++ + G+  D      +L A   L  +   ++ H   IR G    V 
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPV- 397

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           +QN+++ +Y   G +  A ++FE +  +D+V+W S+I+ +  NG  N+AL +F  M   G
Sbjct: 398 LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETG 457

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           +EPD  T+VS+ SA   L  L  G+  H ++ + G     +++N L+D Y++CG +  A 
Sbjct: 458 LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAY 517

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           ++F   + RN + W+ ++    ++G+G+ A+ELF  M+    +P  +TF+ +LYACSH G
Sbjct: 518 KIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSG 577

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V+EG S+ + MK EY + P  EH+ C+VDLLGR   +++AY+ +++M   P   +W  L
Sbjct: 578 LVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCAL 637

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IH +  I E+A   LL+L+  + G+YVL+SN++A   RW +V+EVR  M    + 
Sbjct: 638 LGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLT 697

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEE 538
           K PG S +E+GN++  F   D+ HP+ ++I+  LA++T+KLK E GYV +T+ V  ++ E
Sbjct: 698 KNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGE 757

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK   L  HSE++AIA+ L+ TA GTP+RV KNLRVC DCH    L+S+ + RE++VRD
Sbjct: 758 EEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRD 817

Query: 599 RSRFHHFKDGHCSCRDYW 616
            SRFHHFKDG CSC D+W
Sbjct: 818 ASRFHHFKDGMCSCGDFW 835



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 151/270 (55%), Gaps = 1/270 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + + +IFTWN M+ GY  +   L A+E+Y +M   G+  D++T+P LLKA   
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGI 70

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNS 214
           + D+  G + H +AI+ G +S VFV NSLV +YA    +  A K+F+ M  R D+V+WNS
Sbjct: 71  VEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNS 130

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+ ++ NG   EAL LF EM   GV  + YT  +   AC +   + LG + H  + K G
Sbjct: 131 IISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSG 190

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V V NAL+  Y + G +  A  +F  +  ++ V+W++++ G   NG   EALE F 
Sbjct: 191 RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFY 250

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +++     P +V+ + ++ A    G +  G
Sbjct: 251 DLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 208/410 (50%), Gaps = 34/410 (8%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPN-IFTWNTMIR 116
           ++H  +I++G      D   +++ ++V+L      ++ A  +F  +   N + +WN++I 
Sbjct: 79  EIHGLAIKYGC-----DSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIIS 133

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y+ +     A+ L+S+M  +G+  +T+T+   L+A    + +++G Q H+  +++G   
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V+V N+LV MY  FG + +A  +F  +  +D+V WNS++ GF  NG  +EAL  F ++ 
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           +  ++PD  +++S+  A   LG L  G+  H Y  K G   N+ V N L+D Y+KC  + 
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              R F  M  ++ +SW+T   G A N    +ALEL +++++ G          +L AC 
Sbjct: 314 YGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC- 372

Query: 357 HCGMVDEGFSYFKRMKDEYGIM-------PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
                  G +   ++K+ +G         P +++   ++D+ G  G++  A    ++ + 
Sbjct: 373 ------RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFES-IE 423

Query: 410 PPNAVIWRTLLGACTIH---GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
             + V W +++ +C +H    + A+   +      LEP    DYV L ++
Sbjct: 424 CKDVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEP----DYVTLVSI 468



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 3/207 (1%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K+K++H ++IR G  L++P L   +I  +      + YA  IF  ++  ++ +W +MI  
Sbjct: 380 KIKEIHGYTIRGG--LSDPVLQNTII-DVYGECGIIDYAVRIFESIECKDVVSWTSMISC 436

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           Y  +     A+E++S M  +G++PD  T   +L A+  L+ ++ G++ H   IR GF   
Sbjct: 437 YVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILE 496

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             + N+LV MYA  G V+DA K+F     R+L+ W ++I+ +  +G    A+ LF  M  
Sbjct: 497 GSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKD 556

Query: 238 EGVEPDGYTMVSLFSACAELGALALGR 264
           E + PD  T ++L  AC+  G +  G+
Sbjct: 557 EKIIPDHITFLALLYACSHSGLVNEGK 583



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G V DA  +F+ MSER +  WN+++ G+ SNG+   AL ++REM   GV  D YT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
              L  AC  +  L  G   H    K G    V V N+L+  Y+KC  I  A+++F  M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 307 KRN-AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            RN  VSW++++   + NG   EAL LF EM   G V    TF   L AC     +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
                      I   I   G ++D+     LV     Y++   MP  AVI+  L G
Sbjct: 181 Q----------IHAAILKSGRVLDVYVANALVAM---YVRFGKMPEAAVIFGNLEG 223


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 338/581 (58%), Gaps = 14/581 (2%)

Query: 39  TSVVRKCIT---LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
            ++++KC     L+Q      H L+ +     RH + + N  L  Y      +    +  
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSI----FRHDIVMGNTLLNMY------AKCGSLEE 113

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  TW T+I GY++   P  A+  +++M   G  P+  T   ++KA + 
Sbjct: 114 ARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q H   ++ GF+S V V ++L+ +Y  +G + DA  VF+ +  R+ V+WN++
Sbjct: 174 ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNAL 233

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A      +AL LF+ M  +G  P  ++  SLF AC+  G L  G+  H Y+ K G 
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  N LLD Y+K G I  A+++F  + KR+ VSW++L+   A +GFGKEA+  F+E
Sbjct: 294 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEE 353

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P E++F+ VL ACSH G++DEG+ Y++ MK + GI+P+  H+  +VDLLGRAG
Sbjct: 354 MRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A  +I+ M + P A IW+ LL AC +H ++ +   A   + +L+P   G +V+L N
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +   VR+ M +  VKK P  S VE+ N +  F   D  HPQ EEI     E
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEE 532

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+K  GYVP T +V   ++++E+E  L YHSEKIA+AF L+NT PG+ + + KN+RV
Sbjct: 533 VLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRV 592

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIKL SKV  REI+VRD +RFHHFKDG+CSC+DYW
Sbjct: 593 CGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 160/310 (51%), Gaps = 10/310 (3%)

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
           +N LL     + +  S I  D   Y  LLK  +    +  G   H+  +++ F   + + 
Sbjct: 39  SNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMG 98

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+L++MYA  G +++A KVFE M +RD V W ++I+G++ + +P +AL  F +M   G  
Sbjct: 99  NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +T+ S+  A A       G + H +  K G   NV+V +ALLD Y++ G++  AQ V
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  +  RN VSW+ L+ G A     ++ALELF+ M   GF P   ++  +  ACS  G +
Sbjct: 219 FDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFL 278

Query: 362 DEGFSYFKRMKDEYGIMP--KIEHFG--CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           ++G     +    Y I    K+  F    ++D+  ++G +  A + I + L   + V W 
Sbjct: 279 EQG-----KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWN 332

Query: 418 TLLGACTIHG 427
           +LL A   HG
Sbjct: 333 SLLTAYAQHG 342


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 368/635 (57%), Gaps = 66/635 (10%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKY----------LIY------- 84
           +L  CA+++ +   ++VH+F ++ G    VP+ N  L  Y           ++       
Sbjct: 168 VLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERS 227

Query: 85  -----AIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-H 135
                A+VSL      M  A ++F ++ D  I +WN +I GY ++     A+  +S+M  
Sbjct: 228 VSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLS 287

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
            S + PD  T   +L A + L  V +G+Q H+  +R+    +  V N+L+ MYA  G V+
Sbjct: 288 YSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVE 347

Query: 196 DACKV---------------------------------FELMSERDLVAWNSVINGFASN 222
           +A  V                                 F++MS RD+VAW ++I G+  N
Sbjct: 348 NARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQN 407

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G  +EA+ LFR M   G EP+ YT+ ++ S CA L  L  G++ H    +     + +V+
Sbjct: 408 GHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVS 467

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           N+++  Y++ G +  A+RVF  +  ++  V+W++++V LA +G G++A+ LF+EM   G 
Sbjct: 468 NSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGV 527

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +TFVGVL AC+H G VDEG  YF++++D++GI+P++ H+ CMVDLL RAGL  +A 
Sbjct: 528 KPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQ 587

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E+IQ M + P+A+ W +LL AC +H ++ +AE+A   LL ++P +SG Y  LSN+Y+   
Sbjct: 588 EFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACG 647

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW +  ++ +    + VKK  G S   +GNRV  F   D  HPQ + ++   A++   +K
Sbjct: 648 RWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIK 707

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             G+VP  ++V  D+++E KE+ LS HSEK+AIAF LV+T   T +R++KNLRVC DCH 
Sbjct: 708 KAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHT 767

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           AIK ISKV  REI++RD +RFHHFKDG CSC+DYW
Sbjct: 768 AIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 41/279 (14%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  NSL+ +YA  G + DA  VF  M ERD V+W  ++ G    G+  EA+ +F +M +
Sbjct: 96  VFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVT 155

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           +G+ P  +T+ ++ S+CA   A  +GR+ H++V K+GLS  V V N++L+ Y KCG    
Sbjct: 156 DGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAET 215

Query: 298 AQRVFREMRKRNA-------------------------------VSWSTLVVGLAVNGFG 326
           A+ VF  M +R+                                VSW+ ++ G   NG  
Sbjct: 216 ARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLN 275

Query: 327 KEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            +AL  F  M       P E T   VL AC++ GMV  G    +Y  R +     MP I 
Sbjct: 276 AKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR-----MPYIG 330

Query: 383 HF-GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
                ++ +  ++G V+ A   +Q  +M    VI  T L
Sbjct: 331 QVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTAL 369



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/539 (22%), Positives = 207/539 (38%), Gaps = 140/539 (25%)

Query: 45  CITLLQVC--ASSKHKLKQVHAFSIRHGVPLNN---PDLGKYLIYAIVSLSFPMSYAHNI 99
           C  LLQ C  A++    + +HA +++ G+  +     +L  Y              A  +
Sbjct: 26  CARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRL 85

Query: 100 FSHV--QDPNIFTWNTMIRGYAESA---------------NPLL---------------- 126
           F  +     N+FTWN+++  YA+S                +P+                 
Sbjct: 86  FDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGE 145

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A++++  M   G+ P   T   +L + +      +G + HS  ++ G  S V V NS+++
Sbjct: 146 AIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLN 205

Query: 187 MYAAFGHVKDACKVFELMSERDL-------------------------------VAWNSV 215
           MY   G  + A  VFE M ER +                               V+WN+V
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I G+  NG   +AL  F  M S   + PD +T+ S+ SACA LG +++G++ H Y+ +  
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFRE------------------------------ 304
           +     V NAL+  Y+K G +  A+ V ++                              
Sbjct: 326 MPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385

Query: 305 ---MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS----- 356
              M  R+ V+W+ ++VG   NG   EA+ELF+ M   G  P   T   VL  C+     
Sbjct: 386 FDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACL 445

Query: 357 ------HCGMVDE--------------------GFSYFKRMKDEYGIMPKIEHFGCMVDL 390
                 HC  +                         + +R+ D      +   +  M+  
Sbjct: 446 EYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVA 505

Query: 391 LGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           L + GL + A    + ML   + P+ + +  +L ACT   H    +  +    QL+ KH
Sbjct: 506 LAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACT---HVGFVDEGKRYFQQLQDKH 561



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 183/386 (47%), Gaps = 42/386 (10%)

Query: 24  KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLG 79
           + L +ST A  E  ITSV+  C  L  V        KQVHA+ +R  +P    + N  + 
Sbjct: 284 RMLSYSTMAPDEFTITSVLSACANLGMVSIG-----KQVHAYILRSRMPYIGQVTNALIS 338

Query: 80  KY------------LIYAIVS----LSFP-----------MSYAHNIFSHVQDPNIFTWN 112
            Y            +  A+++    +SF            M +A  +F  + + ++  W 
Sbjct: 339 MYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWT 398

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            MI GY ++ +   A+EL+  M  SG +P+++T   +L   + LA +  G+Q H  AIR+
Sbjct: 399 AMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRS 458

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFASNGKPNEALTL 231
             E    V NS+V MYA  G +  A +VF+ +  R + V W S+I   A +G   +A+ L
Sbjct: 459 LQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGL 518

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVGLSDNVNVNNALLDFYS 290
           F EM   GV+PD  T V + SAC  +G +  G+R    +  K G+   ++    ++D  +
Sbjct: 519 FEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLA 578

Query: 291 KCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEA-LELFKEMEIGGFVPGEVTF 348
           + G+   AQ   ++M  + +A++W +L+    V+     A L   K + I     G  + 
Sbjct: 579 RAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSA 638

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDE 374
           +  +Y  S CG  ++    +KR KD+
Sbjct: 639 LSNVY--SACGRWNDAAKIWKRRKDK 662


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 346/572 (60%), Gaps = 4/572 (0%)

Query: 47  TLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T++  C+ S   ++  Q H ++++ G+  +     K  +  + S    +  A +++  V 
Sbjct: 134 TIISSCSDSGQVVEGWQCHGYALKSGLVFHQ--YVKNALICMYSRRSDVKGAMSVWYEVP 191

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++F++N +I G  E+  P  A+E+  +M    I  D  TY       S L D+R+G Q
Sbjct: 192 GLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQ 251

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H    R G E   FV ++++ MY   G++ +A KVF  +  +++V+W +++  ++ NG 
Sbjct: 252 VHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC 311

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  F EM  +G+ P+ YT   L ++CA + AL  G+  HT + K G  D++ V NA
Sbjct: 312 FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA 371

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L++ YSK G I AA +VF EM  R++++WS ++ GL+ +G G+EAL +F+EM      P 
Sbjct: 372 LINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPH 431

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            VTFVGVL AC+H G V EGF Y  ++  + GI P +EH+ C+V LL +AG + +A  ++
Sbjct: 432 YVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFM 491

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           ++  +  + V WRTLL AC +H +  + +     +LQ++P   G Y+LLSN+YA  +RW 
Sbjct: 492 KSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWD 551

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V ++R+ M +  VKK PG S +E+ N +  F    ++HP++ +I+  + E+   ++  G
Sbjct: 552 GVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMG 611

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YVP    VF D+E+E+K + +SYHSEK+AIA+ L+ T  G P+RV+KNLR+C DCH A+K
Sbjct: 612 YVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVK 671

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LISKV +R I+VRD +RFH F DG CSC DYW
Sbjct: 672 LISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 174/333 (52%), Gaps = 3/333 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS 154
           A  +F  ++  N+ +W  ++ GY  +   L  + L+  M  V  ++P+ + +  ++ + S
Sbjct: 81  ARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCS 140

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
               V  G Q H  A+++G     +V+N+L+ MY+    VK A  V+  +   D+ ++N 
Sbjct: 141 DSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNI 200

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +ING   NG P+EAL +   M  E +  D  T V+ F  C+ L  L LG + H  +++ G
Sbjct: 201 IINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTG 260

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +  V++A++D Y KCG I+ A++VF  ++ +N VSW+ ++   + NG  +EAL  F 
Sbjct: 261 AEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFP 320

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EME+ G +P E TF  +L +C+    +  G     R+K   G    I     ++++  ++
Sbjct: 321 EMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS-GFEDHIIVGNALINMYSKS 379

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G ++ A++    M+   +++ W  ++   + HG
Sbjct: 380 GSIEAAHKVFLEMIC-RDSITWSAMICGLSHHG 411


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 328/528 (62%), Gaps = 6/528 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A ++F  +++ N+ +W  MI GY++      A+ L+ +M  S  +P+  T+  +L +
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +  +   +G Q HS   +  +E+ +FV +SL+ MYA  G + +A  VFE + ERD+V+ 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I+G+A  G   EAL LF  +  EG+  +  T  SL +A + L AL  G++ H++V +
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L   V + N+L+D YSKCG +  A+++F  M  R  +SW+ ++VG + +G G E ++L
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKL 300

Query: 333 FKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM---KDEYGIMPKIEHFGCMV 388
           FK M E     P  VTF+ VL  CSH G+ D+G   F  M    DE  I   IEH+GC++
Sbjct: 301 FKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDE--IEAGIEHYGCVI 358

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAG V++A+E I+ M   P A IW +LLGAC +H ++ I E     LL++EP+++G
Sbjct: 359 DLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAG 418

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
           +YV+LSNLYA   RW +V+ VR  M+++ V K PG S +EL   +  F+  DRSHP+ EE
Sbjct: 419 NYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREE 478

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           +   + E+  K K  GYVP    V  D++EE+KE  L  HSEK+A+AF L++T+ G P+R
Sbjct: 479 VFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLR 538

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V+KNLR+C DCH   K +SKVY R++ +RD++RFHH   G CSC DYW
Sbjct: 539 VIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 160/322 (49%), Gaps = 11/322 (3%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G +     Y  LL        VR G++ H+  I+  +   V++   L+ +Y     
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +  A  VF+ M ER++V+W ++I+G++  G  +EAL LF +M     EP+ +T  ++ S+
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C       LGR+ H++++K    +++ V ++LLD Y+K G I  A+ VF  + +R+ VS 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
           + ++ G A  G  +EALELF  ++  G     VT+  +L A S    +D G    S+  R
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGHS 429
            +  + ++ +      ++D+  + G +  A +   N  MP   VI W  +L   + HG  
Sbjct: 241 CELPFYVVLQ----NSLIDMYSKCGNLNYARKIFNN--MPVRTVISWNAMLVGYSKHG-K 293

Query: 430 AIAEIARSTLLQLEPKHSGDYV 451
            I  +    L++ E K   D V
Sbjct: 294 GIEVVKLFKLMREENKVKPDSV 315



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 51/246 (20%)

Query: 14  EEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVP- 72
           EE  +L CR++    S+     N +T      +T L   A+  H  KQVH+  +R  +P 
Sbjct: 194 EEALELFCRLQREGMSS-----NYVTYA--SLLTALSGLAALDHG-KQVHSHVLRCELPF 245

Query: 73  ---LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
              L N  +  Y      S    ++YA  IF+++    + +WN M+ GY++    +  V+
Sbjct: 246 YVVLQNSLIDMY------SKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVK 299

Query: 130 LYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188
           L+  M     +KPD+ T+  +L   S           H      G E    + N    + 
Sbjct: 300 LFKLMREENKVKPDSVTFLAVLSGCS-----------HGGLEDKGLEMFDEMMNGGDEIE 348

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
           A   H                  +  VI+     G+  EA  L ++M     EP      
Sbjct: 349 AGIEH------------------YGCVIDLLGRAGRVEEAFELIKKMP---FEPTAAIWG 387

Query: 249 SLFSAC 254
           SL  AC
Sbjct: 388 SLLGAC 393


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/512 (44%), Positives = 317/512 (61%), Gaps = 20/512 (3%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           T N  I+GY  +     A  ++  M     + DT ++  ++   +   DV   ++     
Sbjct: 48  TNNAFIQGYCSAGRVTDARRVFDGMP----RRDTVSFNSMIHGYAVSGDVGSAQRL---- 99

Query: 170 IRNGFESLV----FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
               FE ++        S+V  +   G V+ A +VFE M ERDLV+WN++I+G   N  P
Sbjct: 100 ----FERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLP 155

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL LFR M  EG  P+  T+VS+ SAC   GAL  G+  H +V K  L  +  +  AL
Sbjct: 156 VEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTAL 215

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PG 344
           +D Y+KCG +  A  VF  +R RN  +W+ ++ GLA+NG+  +AL++F++ME+ G V P 
Sbjct: 216 VDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPD 275

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           EVTFVGVL ACSH G VD G  +F  +  +YG+   +EH+ CMVDLL R+G +++A++ I
Sbjct: 276 EVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLI 335

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M M P+ V+WR LLG C +H +  +AE   + + ++E   SGD+VLLSNLYA   RW 
Sbjct: 336 TEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAVGRWN 392

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V++VRRTM  + ++K PG S VE+   + EF  GD+SHP  ++IHA L EI  +++  G
Sbjct: 393 GVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHG 452

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YV  T  VF DIE+EEKE AL YHSEK+AIAF L+   P   +R+VKNLR C DCH   K
Sbjct: 453 YVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAK 512

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+SK+Y REIVVRDR+RFHHF+ G CSC D+W
Sbjct: 513 LVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 5/262 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +WN MI G   +  P+ A+ L+  M   G  P+  T   +L A + 
Sbjct: 127 ARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTG 186

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G+  H    +       F+  +LV MYA  G V+ A +VF  +  R+   WN++
Sbjct: 187 AGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAM 246

Query: 216 INGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRA-HTYVWKV 273
           ING A NG   +AL +FR+M   G V PD  T V +  AC+  G +  G+   +T   K 
Sbjct: 247 INGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKY 306

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALEL 332
           G+   +     ++D  ++ G +  A ++  EM  K + V W  L+ G  ++   K A  +
Sbjct: 307 GVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENV 366

Query: 333 FKEMEIGGFVPGEVTFVGVLYA 354
             EME      G+   +  LYA
Sbjct: 367 ISEME--ATCSGDHVLLSNLYA 386


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 338/587 (57%), Gaps = 8/587 (1%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           A +  P   V R  IT    CA SK+    +++HA  +       +  L   LI+     
Sbjct: 44  AGELAPTPRVYRSFIT---ACAQSKNLEDARKIHA-HLGSSRFAGDAFLDNSLIHMYCKC 99

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              +  A N+F  ++  ++ +W ++I GYA++  P+ A+ L   M     KP+  T+  L
Sbjct: 100 RSVLD-ARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASL 158

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LKA    AD   G Q H++A++ G+   V+V ++L+ MYA  G +  A  VF+ +  ++ 
Sbjct: 159 LKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG 218

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN++I+GFA  G    AL  F EM   G E   +T  S+FS+ A LGAL  G+  H +
Sbjct: 219 VSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAH 278

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V K        V N LLD Y+K G +I A++VF  +  ++ V+W++++   A  G GKEA
Sbjct: 279 VIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEA 338

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           +  F+EM   G    ++TF+ +L ACSH G+V EG  YF+ MK EY + P+I+H+  +V 
Sbjct: 339 VSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHYVTVVA 397

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAGL+  A  +I  M M P A +W  LL AC +H ++ + + A   + +L+P  SG 
Sbjct: 398 LLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGP 457

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
            VLL N+YA   +W     VR  M    VKK P  S VE+ N V  F   D +HPQ EEI
Sbjct: 458 PVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEI 517

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           + M  EI+KK++ EGYVP  + V   ++++EKE  L YHSEK+A+AF L+    G  +R+
Sbjct: 518 YKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRI 577

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KN+R+C DCH A K ISKV+ REIVVRD +RFHHF  G CSC DYW
Sbjct: 578 MKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/621 (39%), Positives = 343/621 (55%), Gaps = 53/621 (8%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           ++R   TLL   A + H L+ +HA  +  G   +   L  +L  A ++ S  +SYA  + 
Sbjct: 5   LLRDPTTLLPSLAEASH-LRALHAHLVVSGRLASPSHLAAFL--ASLASSNHLSYARLVL 61

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL---------- 150
              +   +   N  IR  A    P LA   +  +    + PD ++  FL+          
Sbjct: 62  PQ-RPATLLAHNAFIRALARGPRPCLAFAAFRDLP---LPPDHYSLNFLVRAATALVASA 117

Query: 151 ---KAISKLADVRM-GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD--------AC 198
              K +S   + R+     H  A+R G  +   VQ+ ++ MYAA G V          AC
Sbjct: 118 AEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIAC 177

Query: 199 -----------------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
                                   +F+ M +RD VAW+++I G+   G+  EAL LF EM
Sbjct: 178 PDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEM 237

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            S G      T+VS+ +ACA++G L  G+  H YV   G+  ++ +  AL+D YSKCG +
Sbjct: 238 LSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAV 297

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + A  VF  M +RN  +W++ V GLA+NG G E L+LFK ME  G  P  V+FV VL  C
Sbjct: 298 VTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGC 357

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           S  G+VDEG + F  M D+YG+ P  EH+GCMVDL GRAG +  A  +I +M M P+  +
Sbjct: 358 SMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGV 416

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LL A  IH    + + A   LL +E ++   +V LSN+YA  Q W  V  VR  M  
Sbjct: 417 WGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKA 476

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + VKK PG S +E+  +V EF++G R HP+  EI  MLAE+ ++L+L+GY   T  V  D
Sbjct: 477 KGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFD 536

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           IEEEEKE A+S HSEK+A+AF L+       +R+VKNLRVC DCH  IKL+SKV++REIV
Sbjct: 537 IEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIV 596

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RDR+RFHHFK G CSCRDYW
Sbjct: 597 MRDRNRFHHFKGGECSCRDYW 617


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 356/621 (57%), Gaps = 52/621 (8%)

Query: 46  ITLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLI--YAIV-------------- 87
           + +L  CAS    L+  QVH FSIR G+ +++  +G  ++  YA                
Sbjct: 368 VNILPACASLAASLRGRQVHGFSIRSGL-VDDVFVGNAVVDMYAKCGKMEEANKVFQRMK 426

Query: 88  --------------SLSFPMSYAHNIFSHVQDPNI----FTWNTMIRGYAESANPLLAVE 129
                         S +  + +A ++F  + + NI     TW  +I GYA+      A++
Sbjct: 427 FKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALD 486

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR---------NGFESLVFV 180
           ++ +M   G +P+  T   LL A   +  +  G++TH  AI+          G + L  +
Sbjct: 487 VFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVI 546

Query: 181 QNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREM--A 236
            N L+ MYA     + A K+F+ +S  +RD+V W  +I G+A +G  N AL LF  M   
Sbjct: 547 -NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKM 605

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGII 295
            + ++P+ +T+     ACA L AL  GR+ H YV +    S  + V N L+D YSK G +
Sbjct: 606 DKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDV 665

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             AQ VF  M +RNAVSW++L+ G  ++G G++AL +F EM     VP  +TF+ VLYAC
Sbjct: 666 DTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYAC 725

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH GMVD G ++F RM  ++G+ P  EH+ CMVDL GRAG + +A + I  M M P  V+
Sbjct: 726 SHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVV 785

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LL AC +H +  + E A + LL+LE  + G Y LLSN+YA  +RW +V  +R TM +
Sbjct: 786 WVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKR 845

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             +KK PG S ++    V  F++GDRSHPQ+++I+  LA++ +++K  GYVP+T     D
Sbjct: 846 TGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHD 905

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +++EEK D L  HSEK+A+A+ ++   P  P+R+ KNLR+C DCH AI  ISK+   EI+
Sbjct: 906 VDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEII 965

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RD SRFHHFK+G CSC+ YW
Sbjct: 966 LRDSSRFHHFKNGSCSCKGYW 986



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 203/414 (49%), Gaps = 20/414 (4%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV-- 103
           IT L+ C S  H  K +H  SI  G+  +   L   LI   ++ S   +YA  +   +  
Sbjct: 165 ITALKECNSLAHA-KLLHQQSIMQGLLFH---LATNLIGTYIA-SNSTAYAILLLERLPP 219

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              ++F WN +IR      +P     LY +M   G  PD +T+PF+ KA + L+ + +G 
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGA 279

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSVINGFA 220
             H+   R+GF S VFV N++V MY   G ++ A  +F+ +  R   DLV+WNSV++ + 
Sbjct: 280 SLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 221 SNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                N AL LF +M +  +  PD  ++V++  ACA L A   GR+ H +  + GL D+V
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDV 399

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NA++D Y+KCG +  A +VF+ M+ ++ VSW+ +V G +  G  + AL LF+ M   
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
                 VT+  V+   +  G   E    F++M D  G  P +     ++      G +  
Sbjct: 460 NIELDVVTWTAVITGYAQRGQGCEALDVFRQMCD-CGSRPNVVTLVSLLSACVSVGALLH 518

Query: 400 -------AYEYIQNMLMP-PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
                  A ++I N+  P P A   + + G   ++      E+AR     + PK
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPK 572


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 336/576 (58%), Gaps = 13/576 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSI----RHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           TLL+ C   K   + + VH   I    RH + +NN  L  Y      +    +  A  +F
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMY------AKCGSLEEARKVF 109

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             + + +  TW T+I GY++   P  A+ L+++M   G  P+  T   ++KA +      
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G Q H   ++ GF+S V V ++L+ +Y  +G + DA  VF+ +  R+ V+WN++I G A
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
                 +AL LF+ M  EG  P  ++  SLF AC+  G L  G+  H Y+ K G      
Sbjct: 230 RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 289

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
             N LLD Y+K G I  A+++F  + KR+ VSW++L+   A +GFG EA+  F+EM  GG
Sbjct: 290 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGG 349

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P E++F+ VL ACSH G++DEG+ Y++ MK + GI+ +  H+  +VDLLGRAG + +A
Sbjct: 350 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRA 408

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
             +I+ M + P A IW+ LL AC +H ++ +   A   + +L+P   G +V+L N+YA  
Sbjct: 409 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 468

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            RW +   VR+ M +  VKK P  S VE+ N +  F   D  HPQ EEI     E+  K+
Sbjct: 469 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKI 528

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K  GYVP T +V   ++++E+E  L YHSEKIA+AF L+NT PG+ + + KN+RVC DCH
Sbjct: 529 KELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCH 588

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            AIKL SK   REI+VRD +RFHHFKDG CSC+DYW
Sbjct: 589 SAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 154/295 (52%), Gaps = 10/295 (3%)

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           S I  D   Y  LLK  +    +  G   H   I++ F   + + N+L++MYA  G +++
Sbjct: 45  SYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEE 104

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A KVF+ M ERD V W ++I+G++ + +P +AL LF +M   G  P+ +T+ S+  A A 
Sbjct: 105 ARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAA 164

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
                 G + H +  K G   NV+V +ALLD Y++ G++  AQ VF  +  RN VSW+ L
Sbjct: 165 ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNAL 224

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           + G A     ++ALELF+ M   GF P   ++  +  ACS  G +++G     +    Y 
Sbjct: 225 IAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYM 279

Query: 377 IMP--KIEHFG--CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           I    K+  F    ++D+  ++G +  A + I + L   + V W +LL A   HG
Sbjct: 280 IKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWNSLLTAYAQHG 333


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/522 (40%), Positives = 317/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ TWN +I  Y ++ N   AV L+ ++   GIK +  T+  +L   + 
Sbjct: 261 ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  H +    G++  V V  +L+ +Y        A K+F  M  +D++ W  +
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 380

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
              +A NG   EAL LF+EM  EG  P   T+V++   CA L AL  GR+ H+++ + G 
Sbjct: 381 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGF 440

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V  AL++ Y KCG +  A+ VF +M KR+ + W++++   A +G+  E L+LF +
Sbjct: 441 RMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQ 500

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ G     V+FV VL A SH G V +G+ YF  M  ++ I P  E +GC+VDLLGRAG
Sbjct: 501 MQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAG 560

Query: 396 LVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
            +++A + +  +    P+ ++W TLLGAC  H  +  A+ A   +L+ +P HSG YV+LS
Sbjct: 561 RIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLS 620

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA    W  V  +R+ M    VKK PG S +E+ NRV EF  GDRSHP+   I+A L 
Sbjct: 621 NVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELD 680

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            +  +++  GY+P T+ +  D+E+E KED L YHSE++AIAF L++T PGTP+RV+KNLR
Sbjct: 681 VLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLR 740

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH A K ISK+  REI+VRD  RFH+FKDG CSC+DYW
Sbjct: 741 VCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 194/398 (48%), Gaps = 8/398 (2%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           QE  +       + +L  CAS++  LK   ++H   ++ G    +  +G  LI  + +  
Sbjct: 98  QEEDVMPTKVTYVAILNACASTE-SLKDGMEIHGQILQQGFE-GDVFVGTALI-NMYNKC 154

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             +  A + F  ++  ++ +W  MI    +     LA  LY +M + G+ P+  T   + 
Sbjct: 155 GSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVF 214

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A      +  G+  +S+      ES V V NS ++M+   G + DA ++FE M +RD+V
Sbjct: 215 NAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVV 274

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            WN VI  +  N    EA+ LF  +  +G++ +  T V + +    L +LA G+  H  V
Sbjct: 275 TWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELV 334

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            + G   +V V  AL+  Y +C     A ++F +M  ++ ++W+ + V  A NGF KEAL
Sbjct: 335 KEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEAL 394

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +LF+EM++ G  P   T V VL  C+H   + +G      +  E G   ++     ++++
Sbjct: 395 QLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII-ENGFRMEMVVETALINM 453

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            G+ G + +A    + M    + ++W ++LGA   HG+
Sbjct: 454 YGKCGKMAEARSVFEKM-AKRDILVWNSMLGAYAQHGY 490



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 193/415 (46%), Gaps = 11/415 (2%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + LLQ C+S+K+    ++VH      G   NN   G  +       S P   A  +F  +
Sbjct: 9   VALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVP--EAQQVFEIL 66

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +  ++F W  MI  Y +  +   A+ ++ +M    + P   TY  +L A +    ++ G 
Sbjct: 67  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 126

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H   ++ GFE  VFV  +L++MY   G V+ A   F+ +  RD+V+W ++I     + 
Sbjct: 127 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 186

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +   A  L+R M  +GV P+  T+ ++F+A  +   L+ G+  ++ V    +  +V V N
Sbjct: 187 QFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMN 246

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           + ++ +   G++  A+R+F +M  R+ V+W+ ++     N    EA+ LF  ++  G   
Sbjct: 247 SAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKA 306

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            ++TFV +L   +    + +G    + +K E G    +     ++ L GR     QA++ 
Sbjct: 307 NDITFVLMLNVYTSLTSLAKGKVIHELVK-EAGYDRDVVVATALMSLYGRCEAPGQAWKI 365

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL--LQLEPKHSGDYVLLSNL 456
             +M    + + W  +   C  +  +   + A      +QLE +      L++ L
Sbjct: 366 FVDM-GSKDVITWTVM---CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 416



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 133/281 (47%), Gaps = 2/281 (0%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           KPDT  +  LL+  S   +V  G + H      GFE    V   L+ MYA  G V +A +
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           VFE++  +D+ AW  +I  +   G  + AL +F +M  E V P   T V++ +ACA   +
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L  G   H  + + G   +V V  AL++ Y+KCG +  A   F+ +  R+ VSW+ ++  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
              +     A  L++ M++ G VP ++T   V  A      + EG  +   +     +  
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMES 240

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            +      +++ G AGL+  A    ++M+   + V W  ++
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMV-DRDVVTWNIVI 280



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD    V+L   C+    +  GRR H +V   G   N  V   L+  Y++CG +  AQ+
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + +++  +W+ ++      G    AL +F +M+    +P +VT+V +L AC+    
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           + +G     ++  + G    +     ++++  + G V+ A++  +  L   + V W  ++
Sbjct: 122 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKR-LEHRDVVSWTAMI 179

Query: 421 GACTIHGHSAIA 432
            AC  H   A+A
Sbjct: 180 AACVQHDQFALA 191



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 92/211 (43%), Gaps = 36/211 (17%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L  CA  ++  K +Q+H+  I +G  +    + +  +  +      M+ A ++F  +
Sbjct: 413 VAVLDTCAHLAALQKGRQIHSHIIENGFRMEM--VVETALINMYGKCGKMAEARSVFEKM 470

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              +I  WN+M+  YA+       ++L+++M + G K D  ++  +L A+S         
Sbjct: 471 AKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALS--------- 521

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             HS ++ +G++  V +                    F +    +L  +  V++     G
Sbjct: 522 --HSGSVTDGYQYFVAMLQD-----------------FSITPTPEL--YGCVVDLLGRAG 560

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           +  EA+ +  +++  G  PDG   ++L  AC
Sbjct: 561 RIQEAVDIVLKLS--GCLPDGILWMTLLGAC 589


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 321/547 (58%), Gaps = 35/547 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +PN+ +WN M+ G+  +     AV ++  M V G  PD  T   +L A+  L DV +G Q
Sbjct: 202 EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQ 261

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL--------------- 209
            H   I+ G  S  FV ++++ MY   G VK+  +VF+ + E ++               
Sbjct: 262 VHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGM 321

Query: 210 --------------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                               V W S+I   + NGK  EAL LFR+M + GVEP+  T+ S
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPS 381

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           L  AC  + AL  G+  H +  + G+ D+V V +AL+D Y+KCG I  A+R F +M   N
Sbjct: 382 LIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALN 441

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            VSW+ ++ G A++G  KE +E+F  M   G  P  VTF  VL AC+  G+ +EG+  + 
Sbjct: 442 LVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYN 501

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M +E+GI PK+EH+ C+V LL R G +++AY  I+ M   P+A +W  LL +C +H + 
Sbjct: 502 SMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNL 561

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
           ++ EIA   L  LEP + G+Y+LLSN+YA +  W     +R  M  + ++K PG+S +E+
Sbjct: 562 SLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEV 621

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
           G++V     GD+SHPQ ++I   L ++  ++K  GY+P+T  V  D+EE++KE  L  HS
Sbjct: 622 GHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHS 681

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+   L+NT+PG P++V+KNLR+C DCH  IK+IS++  REI VRD +RFHHFKDG 
Sbjct: 682 EKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGV 741

Query: 610 CSCRDYW 616
           CSC D+W
Sbjct: 742 CSCGDFW 748



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 41/369 (11%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YA-IVSLSFPMSYAHNIFSHVQD 105
           L    +S  + +Q HA  +R  +  ++  L   L+  YA  +SLS P   +  + SH+  
Sbjct: 9   LSSSTASLSQARQAHALILRLNL-FSDTQLTTSLLSFYANALSLSTP-QLSLTLSSHLPH 66

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P +F+++++I  +A S +    +  +S +H   + PD    P  +K+ + L  +  G+Q 
Sbjct: 67  PTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQL 126

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD----------------- 208
           H+ A  +GF +   V +SL HMY     + DA K+F+ M +RD                 
Sbjct: 127 HAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLV 186

Query: 209 ------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
                             LV+WN ++ GF +NG  +EA+ +FR M  +G  PDG T+  +
Sbjct: 187 EEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCV 246

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
             A   L  + +G + H YV K GL  +  V +A+LD Y KCG +    RVF E+ +   
Sbjct: 247 LPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEI 306

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
            S +  + GL+ NG    ALE+F + +        VT+  ++ +CS  G   E    F+ 
Sbjct: 307 GSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRD 366

Query: 371 MKDEYGIMP 379
           M+  YG+ P
Sbjct: 367 MQ-AYGVEP 374



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---AFGHVKDACKVFELMSERDLV 210
           S  A +    Q H++ +R    S   +  SL+  YA   +    + +  +   +    L 
Sbjct: 11  SSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLF 70

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +++S+I+ FA +      LT F  +    + PD + + S   +CA L AL  G++ H + 
Sbjct: 71  SFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA 130

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G   +  V ++L   Y KC  I+ A+++F  M  R+ V WS ++ G +  G  +EA 
Sbjct: 131 AASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAK 190

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ELF EM  GG  P  V++ G+L    + G  DE    F+ M  + G  P      C++  
Sbjct: 191 ELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTVSCVLPA 249

Query: 391 LG 392
           +G
Sbjct: 250 VG 251



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++H FS+R G+  ++  +G  LI         +  A   F  +   N+ +WN +++GYA
Sbjct: 396 KEIHCFSLRRGI-FDDVYVGSALIDMYAKCG-RIQLARRCFDKMSALNLVSWNAVMKGYA 453

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH-SVAIRNGFESLV 178
                   +E++  M  SG KPD  T+  +L A ++      G + + S++  +G E  +
Sbjct: 454 MHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKM 513

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVIN 217
                LV + +  G +++A  + + M  E D   W ++++
Sbjct: 514 EHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 320/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            + +F  + +P++ +WN ++ G+ +S        ++ +M + G KP+  T+  +L++ S 
Sbjct: 206 GNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D   G+Q H+  I+N  +   FV  +LV MYA    ++DA   F+ +  RD+ +W  +
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVI 325

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A   +  +A+  FR+M  EG++P+ YT+ S  S C+ +  L  GR+ H    K G 
Sbjct: 326 ISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH 385

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V +AL+D Y KCG +  A+ +F+ +  R+ VSW+T++ G + +G G++ALE F+ 
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRM 445

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G +P E TF+GVL ACS  G+V+EG   F  M   YGI P IEH+ CMVD+LGRAG
Sbjct: 446 MLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
              +   +I+ M + P ++IW T+LGAC +HG+    E A   L ++EP     Y+LLSN
Sbjct: 506 KFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSN 565

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A + RW +V+ +R  M    +KK PG S VE+  +V  F   D SHP+  EI+A L +
Sbjct: 566 IFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDK 625

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + + L   GYVP+TE V  ++  +EK + L YHSE++A++F L++T    P+R+ KNLR+
Sbjct: 626 LGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRI 685

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  +KLIS + ++EIVVRD  RFHHFK G CSC+D W
Sbjct: 686 CEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 196/394 (49%), Gaps = 18/394 (4%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L+ CA+  S  + K +HA ++R G  ++   LG  L+  + S    +  A  +F+ ++
Sbjct: 56  TVLKGCANTGSLREGKVLHALALRSGCEIDEF-LGCSLV-DMYSKCGTVYDALKVFTKIR 113

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +P++  W+ MI G  +  +   A EL+  M   G +P+  T   L+   + + D+R G+ 
Sbjct: 114 NPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS 173

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H    + GFES   V N L+ MY     V+D  KVFE M+  DLV+WN++++GF  +  
Sbjct: 174 IHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQT 233

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
                 +F +M  EG +P+ +T +S+  +C+ L     G++ H ++ K    D+  V  A
Sbjct: 234 CGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA 293

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+K   +  A   F  +  R+  SW+ ++ G A     ++A++ F++M+  G  P 
Sbjct: 294 LVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPN 353

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG------CMVDLLGRAGLVK 398
           E T    L  CSH   ++ G       +  + +  K  HFG       +VDL G+ G ++
Sbjct: 354 EYTLASCLSGCSHMATLENG-------RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCME 406

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            A E I   L+  + V W T++   + HG    A
Sbjct: 407 HA-EAIFKGLISRDIVSWNTIISGYSQHGQGEKA 439



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 131/264 (49%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  + + N  +WN ++ GYA+  +    ++L+ KM     K    T   +LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +    +R G+  H++A+R+G E   F+  SLV MY+  G V DA KVF  +   D+VAW
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I G    G   EA  LF  M  +G  P+ +T+ SL S    +G L  G+  H  + K
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   +  V+N L+  Y K   +    +VF  M   + VSW+ L+ G   +        +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS 356
           F +M + GF P   TF+ VL +CS
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCS 264



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 90/168 (53%)

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           ++F  M E++ V+WN+++NG+A  G   + L LF +M     +   +T+ ++   CA  G
Sbjct: 6   RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTG 65

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           +L  G+  H    + G   +  +  +L+D YSKCG +  A +VF ++R  + V+WS ++ 
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           GL   G G+EA ELF  M   G  P + T   ++   ++ G +  G S
Sbjct: 126 GLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS 173



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+HA +++ G    +  +G  L+  +      M +A  IF  +   +I +WNT+I GY+
Sbjct: 374 RQLHAVAVKAG-HFGDIFVGSALV-DLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYS 431

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +      A+E +  M   GI PD  T+  +L A S +  V  G++
Sbjct: 432 QHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKK 476


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 331/560 (59%), Gaps = 36/560 (6%)

Query: 93  MSYAHNIFSHVQDPN--IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           +  A+ +F  ++  N  I +WN+M+ G+ +   P  A++L+ +M   G+ P+  T   ++
Sbjct: 291 LDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVM 350

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A +K  ++ +G +      RN     + V N+ + M+   G V+ A  +F+ M +RD+V
Sbjct: 351 SACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVV 410

Query: 211 AWNSVINGFA-------------------------------SNGKPNEALTLFREM--AS 237
           +W ++I+G+A                                +G+P EAL +FRE+    
Sbjct: 411 SWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTK 470

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G  PD  T++S  SACA+LGA+ +G   H Y+ K  +  N N+  +L+D YSK G +  
Sbjct: 471 SGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEK 530

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  VF  +  ++   WS ++ GLA++G G+ A+ELF +M+     P  VTF  +L ACSH
Sbjct: 531 AIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+VDEG   F  M+  YG++PK +H+ CMVD+LGRAG +++A ++I+ M + P+A +W 
Sbjct: 591 SGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWG 650

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LLGAC IHG+  +AE A S LL++EP + G YVLLSNLYA    W  V E+R+ M    
Sbjct: 651 ALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSG 710

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G S +E+   V EF +GD +HP + +I+A L EI  +L+  GYV  T  +   +E
Sbjct: 711 LKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVE 770

Query: 538 EEE-KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EEE KE AL  HSEK+AIAF L+       +R+VKNLRVC DCH   K++SKVY R+IV+
Sbjct: 771 EEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVL 830

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR RFHHF  GHCSC+DYW
Sbjct: 831 RDRYRFHHFSGGHCSCQDYW 850



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 232/442 (52%), Gaps = 43/442 (9%)

Query: 28  HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
           HS+P       T+V  +   L Q C S K +LKQ+HA  +R    L++P     L  A  
Sbjct: 127 HSSPTPASATATNVGDR--ALFQQCTSFK-QLKQIHAQMLRTN-KLHDPYAASELFTAAA 182

Query: 88  SLSF-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHT 145
             SF  + YA  +F  +  PN+++WN +IR  A S++P+ +V ++ +M H S   P+  T
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM- 204
           +P L+KA+++     +G+  H +AI+  F   VFV NSL+H YA+ GH+  A  VFE++ 
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 205 -SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
            + +D+V+WNS++ GF   G P++AL LF  M +EGV P+  TMVS+ SACA+   L LG
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA-- 321
           R+   Y+ +  +  N+NV NA +D + KCG +  A+ +F  M KR+ VSW+T++ G A  
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 322 -----------------------------VNGFGKEALELFKEMEI--GGFVPGEVTFVG 350
                                         +G  KEAL +F+E+++   G  P +VT + 
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLS 482

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
            L AC+  G +D G      +K E  I         ++D+  ++G V++A E   + +  
Sbjct: 483 TLSACAQLGAMDIGEWIHGYIKKER-IQLNRNLATSLIDMYSKSGDVEKAIEVFHS-IGN 540

Query: 411 PNAVIWRTLLGACTIHGHSAIA 432
            +  +W  ++    +HG    A
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAA 562



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           +H +  +  + LN  +L   LI  + S S  +  A  +F  + + ++F W+ MI G A  
Sbjct: 499 IHGYIKKERIQLNR-NLATSLI-DMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMH 556

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-NGFESLVFV 180
                A+EL+  M  + +KP++ T+  LL A S    V  G++      R  G       
Sbjct: 557 GRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH 616

Query: 181 QNSLVHMYAAFGHVKDACKVFELM 204
            + +V +    GH+++A K  E M
Sbjct: 617 YSCMVDVLGRAGHLEEALKFIEGM 640


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/636 (37%), Positives = 357/636 (56%), Gaps = 45/636 (7%)

Query: 17  SDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLN 74
            D P    SL+     +   P +SV   C+  +  CA  +     ++V A+    G+ LN
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRP-SSVTMVCV--ISACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 75  NPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
                K ++ A+V +      +  A  +F    D N+  +NT++  YA       A+ + 
Sbjct: 267 -----KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAIL 321

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            +M   G +PD  T    + A ++L D+  G+  H   IRNG E    + N ++ MY   
Sbjct: 322 DEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKC 381

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPN------------------------- 226
           G  + AC+VF+LMS + +V+WNS+  GF  NG                            
Sbjct: 382 GKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLV 441

Query: 227 ------EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
                 +A+ LFREM  EG++ D  TM+ + SAC  LGA  L +  HTY+ K G+  ++ 
Sbjct: 442 QKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMR 501

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           +N AL+D +++CG   +A +VF +M +R+  +W+  +  +A+ G G+ A  LF +M I G
Sbjct: 502 LNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQG 561

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P  V FV VL ACSH G V++G   F  M+D +GI P+IEH+GCMVDLLGRAGL+++A
Sbjct: 562 VKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREA 620

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
           ++ I++M M PN V+W +LL AC +H +  +A  A   + +L P+ +G +VLLSN+YA  
Sbjct: 621 FDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASA 680

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W +V  VR  + ++ V+K PG S V++   + EF  GD SHP+   I  ML E+  + 
Sbjct: 681 GKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRF 740

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
              G++P   NV  D++E+EKE  LS HSEK+AIAF L+ T    P+RVVKNLR+C+DCH
Sbjct: 741 SDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCH 800

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              K+ S +Y+REI+VRD +RFH F+ G CSC DYW
Sbjct: 801 SFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 216/429 (50%), Gaps = 41/429 (9%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           +T   + +P+T     C+     C  + ++LKQ+H    ++G+      L K L+ A   
Sbjct: 13  ATQIKEADPMTK--DSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTK-LVNAGAE 69

Query: 89  LSFP--MSYAHNIFSHVQ-----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           ++ P  + YA   F   +     D  +F  N++IRGY+ +     A+ LY +M V G+ P
Sbjct: 70  IASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTP 129

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           + +T+PF+L   +K+A    G Q H   ++ G E  VF+QN L+H YA  GH+    KVF
Sbjct: 130 NHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           E MSER++V+W S+I G+A   +P EA++LF EM   G+ P   TMV + SACA+L  L 
Sbjct: 190 EGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLD 249

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           +G R   Y+ ++GL  N  + NAL+D Y KCG I AA+R+F E   RN V ++T++   A
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-----GMVDEGF----------S 366
             G  +EAL +  EM   G  P  VT +  + A +       G V  G+          S
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLG---------------RAGLVKQAYEYIQNMLMPP 411
               + D Y    K E    + DL+                R G V+ A+E + N +   
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWE-VFNQIPER 428

Query: 412 NAVIWRTLL 420
           NAV W T++
Sbjct: 429 NAVFWNTMI 437



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 178/368 (48%), Gaps = 33/368 (8%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M + H +F  + + N+ +W ++I GYA    P  AV L+ +M  +GI+P + T   ++ A
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +KL D+ MGE+  +     G +    + N+LV MY   G +  A ++F+   +R+LV +
Sbjct: 242 CAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 301

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++++ +A  G   EAL +  EM  +G  PD  TM+S  SA A+L  L  G+  H YV +
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR 361

Query: 273 VGLSDNVNVNNALLDFYSKC-------------------------------GIIIAAQRV 301
            GL    ++ N ++D Y KC                               G + +A  V
Sbjct: 362 NGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEV 421

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F ++ +RNAV W+T++ GL      ++A+ELF+EM+  G     VT +G+  AC + G  
Sbjct: 422 FNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-A 480

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            E   +     ++ GI   +     +VD+  R G  + A + + N +   +   W   +G
Sbjct: 481 PELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQ-VFNKMTERDVSAWTAAIG 539

Query: 422 ACTIHGHS 429
              + G+ 
Sbjct: 540 TMAMEGNG 547



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 135/291 (46%), Gaps = 10/291 (3%)

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD---ACKVFELM-----SERDLVAWNS 214
           +Q H    +NG + +      LV+  A     +    A K FEL      S+  L   NS
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I G++S G   EA+ L+  M   GV P+ YT   + S C ++ A   G + H  V K+G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L ++V + N L+ FY++CG +    +VF  M +RN VSW++L+ G A     KEA+ LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM   G  P  VT V V+ AC+    +D G      +  E G+         +VD+  + 
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIG-ELGLKLNKVMVNALVDMYMKC 280

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           G +  A        +  N V++ T+L      G +  A      +LQ  P+
Sbjct: 281 GAIDAAKRLFDE-CVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/539 (39%), Positives = 326/539 (60%), Gaps = 3/539 (0%)

Query: 81  YLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           Y++  ++SL      ++ A  +F  +  P++  +N MI G+  +     +V+L+ ++  S
Sbjct: 245 YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFS 304

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G +  + T   L+   S    + +    H   +++G      V  +   +Y     +  A
Sbjct: 305 GERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLA 364

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
             +F+   E+ +VAWN++I+G+  NG    A++LF+EM      P+  T+ ++ SACA+L
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           G+L+ G+  H  +    L  N+ V+ AL+D Y+KCG I  A ++F  M ++N V+W+T++
Sbjct: 425 GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMI 484

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G  ++G+G EAL+L+ EM   G+ P  VTF+ VLYACSH G+V EG   F  M ++Y I
Sbjct: 485 FGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRI 544

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P IEH+ CMVD+LGR+G +++A E+I+ M + P   +W TLLGAC IH  + IA +A  
Sbjct: 545 EPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASE 604

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L +L+P   G YVLLSN+Y+ E+ +     +R+ + K ++ K+PG +L+E+      F 
Sbjct: 605 RLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFV 664

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
            GDRSH    +I+A L ++T K++  GY   T     D+EEEEKE A++ HSEK+AIAF 
Sbjct: 665 SGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFG 724

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+ T PG  +R++KNLRVC DCH A K ISK+  R IVVRD +RFHHFKDG CSC DYW
Sbjct: 725 LITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 199/407 (48%), Gaps = 6/407 (1%)

Query: 52  CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW 111
           C++ KH L  +HA SI  G   +N  +G  L+      S  + YA  +F  + + +   W
Sbjct: 121 CSNDKH-LMLLHAHSIIDGYG-SNVFVGSALVDLYCKFS-RVVYARKVFDGMPERDTVLW 177

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           NTMI G  ++     +++L+ +M   G++ D+ T   +L A ++L ++++G     +A++
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GF    +V   L+ +Y+  G V  A  +F  ++  DL+A+N++I+GF +NG    ++ L
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKL 297

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FRE+   G      T+V L    +  G L L    H +  K G+  N  V+ A    Y+K
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNK 357

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
              I  A+ +F E  ++  V+W+ ++ G   NG  + A+ LFKEM    F P  VT   +
Sbjct: 358 LNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTI 417

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC+  G +  G      +K E  + P I     +VD+  + G + +A++   +M    
Sbjct: 418 LSACAQLGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSM-SEK 475

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           N V W T++    +HG+   A    + +L L    S     LS LYA
Sbjct: 476 NTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSA-VTFLSVLYA 521



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 191/409 (46%), Gaps = 39/409 (9%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           AS+   L Q HA  I +G   +   L K L   +   S    +A  +F  V  P+IF +N
Sbjct: 22  ASTFPHLAQTHAQFILNGYRFDLATLTK-LTQKLFDFS-ATRHARALFFSVPKPDIFLFN 79

Query: 113 TMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
            ++RG++ + +P  ++ LY+ +   + + PD  TY F + A S    + +    H+ +I 
Sbjct: 80  VLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSII 136

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           +G+ S VFV ++LV +Y  F  V  A KVF+ M ERD V WN++ING   N   ++++ L
Sbjct: 137 DGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQL 196

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FREM ++GV  D  T+ ++  A AEL  L +G        K+G      V   L+  YSK
Sbjct: 197 FREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSK 256

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A+ +FR + + + ++++ ++ G   NG  + +++LF+E+   G      T VG+
Sbjct: 257 CGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGL 316

Query: 352 L----------YACSHCGM-----------VDEGFSYFKRMKDEYGIM---------PKI 381
           +           ACS  G            V   F+      +E  +            +
Sbjct: 317 IPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTV 376

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
             +  M+    + G  + A    + M+     PNAV   T+L AC   G
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 20/313 (6%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           L   I+K +      QTH+  I NG+   +     L      F   + A  +F  + + D
Sbjct: 15  LFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPD 74

Query: 209 LVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           +  +N ++ GF+ N  P+ +++L+  +  +  + PD +T     +AC+    L L   AH
Sbjct: 75  IFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML-LHAH 133

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
           + +   G   NV V +AL+D Y K   ++ A++VF  M +R+ V W+T++ GL  N    
Sbjct: 134 SII--DGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFD 191

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY-FKRMKDEYGIMPKIEHFGC 386
           ++++LF+EM   G      T   VL A +    +  G       +K  +G    +     
Sbjct: 192 DSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV--LTG 249

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA------------EI 434
           ++ L  + G V  A   +   +  P+ + +  ++   T +G +  +             +
Sbjct: 250 LISLYSKCGDVNTA-RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERV 308

Query: 435 ARSTLLQLEPKHS 447
           + ST++ L P HS
Sbjct: 309 SSSTIVGLIPLHS 321


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 331/563 (58%), Gaps = 2/563 (0%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           S   +L ++H     HG  L++    +  +  +         A  +F  ++ PN+ +WN+
Sbjct: 376 SGLEELSRIHLLITEHG--LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNS 433

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MI  Y +      A++L+  M   GI+PD   +  +L A +  +  R  +  H     +G
Sbjct: 434 MIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESG 493

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
                 VQ SLV+MYA  G +  A  + + M E+ + AWN +ING+A +G+  EAL  ++
Sbjct: 494 LGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQ 553

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
           ++  E +  D  T +S+ +AC    +LA G+  H+   + GL  +V V NAL + YSKCG
Sbjct: 554 KLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCG 613

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A+R+F  M  R+AVSW+ ++   A +G  +E L+L ++ME  G     +TFV VL 
Sbjct: 614 SMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLS 673

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           +CSH G++ EG  YF  +  + GI  K EH+GC+VDLLGRAG +++A +YI  M + P  
Sbjct: 674 SCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGI 733

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
           V W +LLGAC +       ++A   LL+L+P +S   V+LSN+Y+    W N  ++RR M
Sbjct: 734 VTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAM 793

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
              RVKK PG S +++ N+V EF + D SHP+  EI+  + E+   ++  GYVP T+ V 
Sbjct: 794 ASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVL 853

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D++EE+KE  L+YHSEK+AIAF L++T   + + + KNLRVC DCH A K ISK+  RE
Sbjct: 854 HDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGRE 913

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           IVVRD  RFHHF+DG CSC+DYW
Sbjct: 914 IVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 177/362 (48%), Gaps = 7/362 (1%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA-E 120
           VHA S+  G   N   L    +  +      +  A ++F  + + N+ TWN M+  Y+ +
Sbjct: 80  VHALSLERGFFQNT--LVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQ 137

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL-VF 179
                LAVEL+++M + G+K +  T+  +L ++     +R G+  HS  +R    SL VF
Sbjct: 138 GCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS-CVRESEHSLDVF 196

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V  +LV+ Y   G + DA KVF+ M  R +  WNS+I+ ++ + +  EA  +F+ M  EG
Sbjct: 197 VNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEG 256

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
              D  T +S+  AC     L  G+     + +     ++ V  AL+  Y++C     A 
Sbjct: 257 ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAA 316

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF  M++ N ++WS ++   A +G   EAL  F+ M+  G +P  VTF+ +L   +   
Sbjct: 317 QVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 376

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            ++E  S    +  E+G+         +V++ GR      A   + + L  PN + W ++
Sbjct: 377 GLEE-LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDA-RTVFDQLELPNLISWNSM 434

Query: 420 LG 421
           +G
Sbjct: 435 IG 436



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 170/335 (50%), Gaps = 4/335 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  N+ TW+ +I  +A+  +   A+  +  M   GI P+  T+  LL   + 
Sbjct: 315 AAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 374

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + +    + H +   +G +    ++N+LV++Y       DA  VF+ +   +L++WNS+
Sbjct: 375 PSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSM 434

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVWKVG 274
           I  +    + ++AL LFR M  +G++PD    +++  AC  +G+    R+  H  V + G
Sbjct: 435 IGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESG 493

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L  +  V  +L++ Y+K G +  A+ + +EM ++   +W+ L+ G A++G  +EALE ++
Sbjct: 494 LGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQ 553

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           ++++      +VTF+ VL AC+    + EG         E G+   +     + ++  + 
Sbjct: 554 KLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKC 612

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           G ++ A     +M +  +AV W  +L A   HG S
Sbjct: 613 GSMENARRIFDSMPI-RSAVSWNGMLQAYAQHGES 646



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 165/334 (49%), Gaps = 3/334 (0%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  ++  N+ +WN MI  Y+   +   A+ L+  M + G+ P+  T   +L +     ++
Sbjct: 15  FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFREL 74

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           R G   H++++  GF     V  +L++MY   G + DA  VFE M+E+++V WN+++  +
Sbjct: 75  RDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVY 134

Query: 220 ASNGKP-NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  G     A+ LF  M  EGV+ +  T +++ ++  +  AL  G+  H+ V +   S +
Sbjct: 135 SLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLD 194

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V VN AL++ Y+KCG +  A++VF  M  R+  +W++++   +++    EA  +F+ M+ 
Sbjct: 195 VFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQ 254

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G     VTF+ +L AC +   +  G  + +    E      +     ++ +  R    +
Sbjct: 255 EGERCDRVTFLSILDACVNPETLQHG-KHVRESISETSFELDLFVGTALITMYARCRSPE 313

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            A +    M    N + W  ++ A   HGH   A
Sbjct: 314 DAAQVFGRM-KQTNLITWSAIITAFADHGHCGEA 346



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 1/167 (0%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY+  G + DA   F  +  R++V+WN +I+ ++S     EAL LF  M  EGV P+  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           +V++ ++C     L  G   H    + G   N  V  ALL+ Y KCG ++ AQ VF EM 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 307 KRNAVSWSTLVVGLAVNGFG-KEALELFKEMEIGGFVPGEVTFVGVL 352
           ++N V+W+ ++   ++ G   K A+ELF  M + G     +TF+ VL
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVL 167



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YS+CG +  A   F ++R RN VSW+ ++   +     +EAL LF  M + G  P  +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            V VL +C     + +G      +  E G          ++++ G+ G +  A    + M
Sbjct: 61  LVAVLNSCGSFRELRDGI-LVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 408 LMPPNAVIWRTLLGACTIHG 427
               N V W  +LG  ++ G
Sbjct: 120 -AEKNVVTWNAMLGVYSLQG 138


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/528 (42%), Positives = 329/528 (62%), Gaps = 6/528 (1%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL---AVELYSKMHVSGIK-PDTHTYPFL 149
           SYA N+F  + +P  F +N++IR  + +A        V +Y +M  +G   P++ T  F 
Sbjct: 78  SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFA 137

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERD 208
           LKA S +  +  G Q HS A R G E   +VQ  L+++YA    V  A  VF+ ++ +++
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKN 197

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           L AW+++I G++  G  NEAL LFREM +  V PD  TMVS+ SACA+ GAL LGR  H 
Sbjct: 198 LAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHA 257

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           ++ + G++ ++ ++ AL+D Y+KCG+I  A+ VF  M +R+  +WS ++VGLA++G  + 
Sbjct: 258 FIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEV 317

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL+LF  M      P  VTF+GVL AC+H G+V+EG  Y+  M+ E GI P +E++GCMV
Sbjct: 318 ALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYGCMV 376

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DL  R+ L+ +AY ++  M +PPN+VIWRTLL A        I + A   LL+LEP +  
Sbjct: 377 DLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPE 436

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
           +YVLLSNLYA   +W  V  +R+ M +  V    G S +E+   + +F + D SHP+ +E
Sbjct: 437 NYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKE 496

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I  +L EI  ++   G+ P T  V  D+ EEEKE AL  HSE++AIA+ L+ T     +R
Sbjct: 497 IRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVIR 556

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VVKNLR C DCH   K++SK Y REI+VRDR RFH F +G CSC+D+W
Sbjct: 557 VVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 345/552 (62%), Gaps = 3/552 (0%)

Query: 59   LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
            LK++H +S++     N  +L      A  +    +SYA  +F  ++   + +WN +I G+
Sbjct: 769  LKELHCYSLKQEFVYN--ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 826

Query: 119  AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            A+S +P L+++ + +M +SG+ PD+ T   LL A SKL  +R+G++ H   IRN  E  +
Sbjct: 827  AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 886

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            FV  S++ +Y   G +     +F+ M ++ LV+WN+VI G+  NG P+ AL +FR+M   
Sbjct: 887  FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 946

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            G++  G +M+ +F AC+ L +L LGR AH Y  K  L D+  +  +L+D Y+K G I  +
Sbjct: 947  GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 1006

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             +VF  +++++  SW+ +++G  ++G  KEA++LF+EM+  G  P ++TF+GVL AC+H 
Sbjct: 1007 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 1066

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI-QNMLMPPNAVIWR 417
            G++ EG  Y  +MK  +G+ P ++H+ C++D+LGRAG + +A   + + M    +  IW+
Sbjct: 1067 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 1126

Query: 418  TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            +LL +C IH +  + E   + L +LEP+   +YVLLSNLYA   +W +V++VR+ M +  
Sbjct: 1127 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 1186

Query: 478  VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
            ++K  G S +EL  +VF F +G+R     EEI ++ + +  K+   GY P T +V  D+ 
Sbjct: 1187 LRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLS 1246

Query: 538  EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
            EEEK + L  HSEK+A+ + L+ T+ GT +RV KNLR+C DCH A KLISKV  REIVVR
Sbjct: 1247 EEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVR 1306

Query: 598  DRSRFHHFKDGH 609
            D  RFHHFK+G 
Sbjct: 1307 DNKRFHHFKNGE 1318



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 171/328 (52%), Gaps = 13/328 (3%)

Query: 41  VVRKCITLLQVCASSKHKL----KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           +VR+ + LL + AS K K     +++H   +     L N D+    I  + ++      +
Sbjct: 437 LVREALGLL-LQASGKRKDIEMGRKIHQL-VSGSTRLRNDDVLCTRIITMYAMCGSPDDS 494

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISK 155
             +F  ++  N+F WN +I  Y+ +      +E + +M   + + PD  TYP ++KA + 
Sbjct: 495 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 554

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           ++DV +G   H + ++ G    VFV N+LV  Y   G V DA ++F++M ER+LV+WNS+
Sbjct: 555 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 614

Query: 216 INGFASNGKPNEALTLFREMASEGVE----PDGYTMVSLFSACAELGALALGRRAHTYVW 271
           I  F+ NG   E+  L  EM  E  +    PD  T+V++   CA    + LG+  H +  
Sbjct: 615 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 674

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+ L   + +NNAL+D YSKCG I  AQ +F+    +N VSW+T+V G +  G      +
Sbjct: 675 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 734

Query: 332 LFKEMEIGG--FVPGEVTFVGVLYACSH 357
           + ++M  GG      EVT +  +  C H
Sbjct: 735 VLRQMLAGGEDVKADEVTILNAVPVCFH 762



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR----- 116
           VH   ++ G+ + +  +G  L+    +  F ++ A  +F  + + N+ +WN+MIR     
Sbjct: 564 VHGLVVKTGL-VEDVFVGNALVSFYGTHGF-VTDALQLFDIMPERNLVSWNSMIRVFSDN 621

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G++E +  LL  E+  +       PD  T   +L   ++  ++ +G+  H  A++   + 
Sbjct: 622 GFSEESFLLLG-EMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK 680

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM- 235
            + + N+L+ MY+  G + +A  +F++ + +++V+WN+++ GF++ G  +    + R+M 
Sbjct: 681 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 740

Query: 236 -ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
              E V+ D  T+++    C     L   +  H Y  K     N  V NA +  Y+KCG 
Sbjct: 741 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 800

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  AQRVF  +R +   SW+ L+ G A +   + +L+   +M+I G +P   T   +L A
Sbjct: 801 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 860

Query: 355 CS 356
           CS
Sbjct: 861 CS 862


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 315/525 (60%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLK 151
           +  A  +F  +   + F+WN  I GY     P  A+EL+  M        +  T    L 
Sbjct: 169 LEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALA 228

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A + +  +R+G++ H   IR        V ++L+ +Y   G + +A  +F+ M +RD+V+
Sbjct: 229 ASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVS 288

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W ++I+    +G+  E   LFR++   GV P+ YT   + +ACA+  A  LG+  H Y+ 
Sbjct: 289 WTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMM 348

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             G        +AL+  YSKCG    A+RVF EM + + VSW++L+VG A NG   EAL 
Sbjct: 349 HAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALH 408

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F+ +   G  P +VT+VGVL AC+H G+VD+G  YF  +K+++G+M   +H+ C++DLL
Sbjct: 409 FFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLL 468

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            R+G  K+A   I NM + P+  +W +LLG C IHG+  +A+ A   L ++EP++   Y+
Sbjct: 469 ARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYI 528

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
            L+N+YA    W  V  VR+ M    + K PG S +E+  +V  F +GD SHP+T +IH 
Sbjct: 529 TLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHE 588

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L E++KK+K EGYVP T  V  D+EEE+KE  L YHSEK+A+ F +++T PGTP++V K
Sbjct: 589 FLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFK 648

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR C DCH AIK ISK+  R+I VRD +RFH F+DG CSC+DYW
Sbjct: 649 NLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 152/331 (45%), Gaps = 47/331 (14%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AVEL   +H +  +P    Y  L+ A  +   + +G + H+    + F   VF+ N L+ 
Sbjct: 74  AVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLD 130

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK---------------------- 224
           MYA  G + DA  +F+ M  RDL +WN++I G+A  G+                      
Sbjct: 131 MYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAA 190

Query: 225 ---------PNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
                    P EAL LFR M   E    + +T+ S  +A A +  L LG+  H Y+ +  
Sbjct: 191 ISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTE 250

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L+ +  V +ALLD Y KCG +  A+ +F +M+ R+ VSW+T++     +G  +E   LF+
Sbjct: 251 LNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFR 310

Query: 335 EMEIGGFVPGEVTFVGVLYACS-----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           ++   G  P E TF GVL AC+     H G    G+          G  P       +V 
Sbjct: 311 DLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA------GYDPGSFAISALVH 364

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +  + G  + A   + N +  P+ V W +L+
Sbjct: 365 MYSKCGNTRVA-RRVFNEMHQPDLVSWTSLI 394


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/621 (38%), Positives = 351/621 (56%), Gaps = 50/621 (8%)

Query: 34  QENPITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           + NP+T V   C+  +  CA  K     K+V ++    G+     +L   ++ A+V +  
Sbjct: 228 EPNPVTMV---CV--ISACAKLKDLELGKKVCSYISELGM-----ELSTIMVNALVDMYM 277

Query: 92  P---MSYAHNIFSHVQDPNIFTWNTMIRGYA--ESANPLLAVELYSKMHVSGIKPDTHTY 146
               +  A  IF    + N+  +NT++  Y   E A+ +L +    +M   G +PD  T 
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVI--LDEMLQKGPRPDKVTM 335

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS- 205
              + A ++L D+ +G+ +H+  +RNG E    + N+++ MY   G  + ACKVFE M  
Sbjct: 336 LSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPN 395

Query: 206 ------------------------------ERDLVAWNSVINGFASNGKPNEALTLFREM 235
                                         ERDLV+WN++I          EA+ LFREM
Sbjct: 396 KTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREM 455

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            ++G+  D  TMV + SAC  LGAL L +   TY+ K  +  ++ +  AL+D +S+CG  
Sbjct: 456 QNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDP 515

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
            +A  VF+ M KR+  +W+  +  +A+ G  + A+ELF EM      P +V FV +L AC
Sbjct: 516 SSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTAC 575

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G VD+G   F  M+  +GI P I H+GCMVDLLGRAGL+++A + IQ+M + PN V+
Sbjct: 576 SHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVV 635

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W +LL AC  H +  +A  A   L QL P+  G +VLLSN+YA   +W +V  VR  M +
Sbjct: 636 WGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKE 695

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + V+K PG S +E+   + EF  GD SH +   I  ML EI  +L   GYVP T NV  D
Sbjct: 696 KGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLD 755

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           ++E+EKE  LS HSEK+A+A+ L+ T  G P+RVVKNLR+C+DCH   KL+SK+Y+REI 
Sbjct: 756 VDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREIT 815

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD +R+H FK+G CSCRDYW
Sbjct: 816 VRDNNRYHFFKEGFCSCRDYW 836



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/416 (32%), Positives = 221/416 (53%), Gaps = 26/416 (6%)

Query: 31  PAS--QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNP--DLGKYLIYAI 86
           PAS  + NPIT   R   + L V   +  +LKQ+H   ++ G+  + P  +L K +  ++
Sbjct: 14  PASLKEANPIT---RNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSV 70

Query: 87  -VSLSFPMSYAHNIFSHVQDPN---IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
            +     + YA N F    D N   +F +N +IRGYA +     A+ LY +M V GI PD
Sbjct: 71  QIGTLESLDYARNAFGD-DDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPD 129

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +T+PFLL A SK+  +  G Q H   ++ G E  +FV NSL+H YA  G V    K+F+
Sbjct: 130 KYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFD 189

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M ER++V+W S+ING++      EA++LF +M   GVEP+  TMV + SACA+L  L L
Sbjct: 190 GMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLEL 249

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G++  +Y+ ++G+  +  + NAL+D Y KCG I AA+++F E   +N V ++T++     
Sbjct: 250 GKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH 309

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           + +  + L +  EM   G  P +VT +  + AC+  G +  G S        Y +   +E
Sbjct: 310 HEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS-----SHAYVLRNGLE 364

Query: 383 HF----GCMVDLLGRAGLVKQAYEYIQNMLMPPN--AVIWRTLLGACTIHGHSAIA 432
            +      ++D+  + G  + A +  ++M   PN   V W +L+      G   +A
Sbjct: 365 GWDNISNAIIDMYMKCGKREAACKVFEHM---PNKTVVTWNSLIAGLVRDGDMELA 417



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 182/363 (50%), Gaps = 35/363 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + N+ +W ++I GY+       AV L+ +M  +G++P+  T   ++ A +KL D
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           + +G++  S     G E    + N+LV MY   G +  A ++F+  + ++LV +N++++ 
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +   ++ L +  EM  +G  PD  TM+S  +ACA+LG L++G+ +H YV + GL   
Sbjct: 307 YVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGW 366

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-------------- 324
            N++NA++D Y KCG   AA +VF  M  +  V+W++L+ GL  +G              
Sbjct: 367 DNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426

Query: 325 -----------------FGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFS 366
                              +EA+ELF+EM+  G +PG+ VT VG+  AC + G +D    
Sbjct: 427 RDLVSWNTMIGALVQVSMFEEAIELFREMQNQG-IPGDRVTMVGIASACGYLGALDLA-K 484

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           +     ++  I   ++    +VD+  R G    A    + M    +   W   +G   + 
Sbjct: 485 WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM-EKRDVSAWTAAIGVMAME 543

Query: 427 GHS 429
           G++
Sbjct: 544 GNT 546


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/570 (38%), Positives = 348/570 (61%), Gaps = 38/570 (6%)

Query: 85  AIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIK 140
           A+VSL+     M  A ++F  + D +I +WN MI GY ++     A++L+S+M H S + 
Sbjct: 235 AMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA 294

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD  T   +L A + L +VR+G+Q H+  +R        V N+L+  YA  G V++A ++
Sbjct: 295 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 354

Query: 201 ---------------------------------FELMSERDLVAWNSVINGFASNGKPNE 227
                                            F +M+ RD+VAW ++I G+  NG+ +E
Sbjct: 355 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 414

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ LFR M + G EP+ YT+ ++ S CA L  L  G++ H    +  L  + +V+NA++ 
Sbjct: 415 AIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIIT 474

Query: 288 FYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            Y++ G    A+R+F ++  ++  ++W++++V LA +G G+EA+ LF+EM   G  P  +
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 534

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T+VGVL ACSH G V+EG  Y+ ++K+E+ I P++ H+ CMVDLL RAGL  +A E+I+ 
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+A+ W +LL AC +H ++ +AE+A   LL ++P +SG Y  ++N+Y+   RW + 
Sbjct: 595 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 654

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             + +   ++ V+K  G S   + +++  F   D  HPQ + ++AM A + +++K  G+V
Sbjct: 655 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P  ++V  D+++E KE+ LS HSEK+AIAF L++T   T +RV+KNLRVC DCH AIK I
Sbjct: 715 PDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAI 774

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SKV  REI+VRD +RFHHF+DG CSC+DYW
Sbjct: 775 SKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 198/498 (39%), Gaps = 107/498 (21%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           + ++ + S  ++ A  +F+ + + +  +W  M+ G   +     A++    M   G  P 
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   +L + +      +G + HS  ++ G  S V V NS+++MY   G  + A  VFE
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 203 L-------------------------------MSERDLVAWNSVINGFASNGKPNEALTL 231
                                           M +R +V+WN++I G+  NG   +AL L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 232 FREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           F  M  E  + PD +T+ S+ SACA LG + +G++ H Y+ +  ++ N  V NAL+  Y+
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 291 KCGIIIAAQRV---------------------------------FREMRKRNAVSWSTLV 317
           K G +  A+R+                                 F  M  R+ V+W+ ++
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG------------- 364
           VG   NG   EA++LF+ M   G  P   T   VL  C+    +D G             
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 365 ------------------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
                             F + +RM D+     +   +  M+  L + G  ++A    + 
Sbjct: 464 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 407 ML---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-----GDYVLLSNLYA 458
           ML   + P+ + +  +L AC+   H+      +    Q++ +H        Y  + +L A
Sbjct: 524 MLRAGVEPDRITYVGVLSACS---HAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 580

Query: 459 YEQRWLNVQEVRRTMVKE 476
               +   QE  R M  E
Sbjct: 581 RAGLFSEAQEFIRRMPVE 598



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 40/279 (14%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  NSL+ M+A  G + DA  VF  M ERD V+W  ++ G    G+  EA+    +M +
Sbjct: 98  VFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA 157

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI--- 294
           +G  P  +T+ ++ S+CA   A A+GR+ H++V K+GL   V V N++L+ Y KCG    
Sbjct: 158 DGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSET 217

Query: 295 ----------------------------IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
                                       +  A+ +F  M  R+ VSW+ ++ G   NG  
Sbjct: 218 ATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 277

Query: 327 KEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            +AL+LF  M       P E T   VL AC++ G V  G    +Y  R +  Y      +
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAY----NSQ 333

Query: 383 HFGCMVDLLGRAGLVKQAYEYI-QNMLMPPNAVIWRTLL 420
               ++    ++G V+ A   + Q+M    N + +  LL
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           NV   N+LL  ++K G +  A+ VF EM +R+AVSW+ +VVGL   G   EA++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 338 IGGFVPGEVTFVGVLYACS-----------------------------------HCGMVD 362
             GF P + T   VL +C+                                    CG  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDL---LGRAGLVKQAYEYIQNMLMPPNAVI-WRT 418
              + F+RM      +  +  +  MV L   LGR  L +  +E      MP  +++ W  
Sbjct: 217 TATTVFERMP-----VRSVSSWNAMVSLNTHLGRMDLAESLFES-----MPDRSIVSWNA 266

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           ++     +G  A A    S +L        ++ + S L A
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/458 (46%), Positives = 283/458 (61%), Gaps = 3/458 (0%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H+  +  G      +  SLV  YAA G    A KVF+ M  RD +AWN +I  +  
Sbjct: 144 ARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTR 203

Query: 222 NGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           N +  +AL LF  M     G EPD  T + L  AC  LGAL  G +   Y    G    +
Sbjct: 204 NRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGEL 263

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V N+L+  Y+KCG +  A +VF E  K++ V+WS ++ GLA NGFGK+A+  F+EM   
Sbjct: 264 KVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRS 323

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P E TF GVL ACSH G+VDEGF +F  M  EY + P + H+GCMVDL+GRAGL+ Q
Sbjct: 324 GVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQ 383

Query: 400 AYEYI-QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           AYE + ++M + P+A IWRTLLGAC IHGH  + E   + L++L+ + +GDYVLL N YA
Sbjct: 384 AYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYA 443

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             + W  V EVR+ M ++ ++ TPG + VEL   + EF   D SHP+  EI+  L EI K
Sbjct: 444 AVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINK 503

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
            L++ GYVP   +   D++ E KE AL+YHSEK+AIAF L+ T    P+R+ KNLRVC D
Sbjct: 504 HLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVD 563

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K+ S VY R ++VRDR+RFHHFK+  CSC DYW
Sbjct: 564 CHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/583 (39%), Positives = 336/583 (57%), Gaps = 27/583 (4%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
            +++H +++R+G  + N  +G  L+    +   P      +F  V    +  WN ++ GYA
Sbjct: 554  REIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK-GRLVFDGVVRRTVAVWNALLAGYA 612

Query: 120  ESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             +     A+ L+ +M   S   P+  T+  +L A  +       E  H   ++ GF    
Sbjct: 613  RNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDK 672

Query: 179  FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            +VQN+L+ MY+  G V+ +  +F  M++RD+V+WN++I G    G+ ++AL L  EM   
Sbjct: 673  YVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRR 732

Query: 239  GVE------------------PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
              E                  P+  T++++   CA L AL  G+  H Y  K  L+ +V 
Sbjct: 733  QGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVA 792

Query: 281  VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            V +AL+D Y+KCG +  A RVF +M  RN ++W+ L++   ++G G+EALELF+ M  GG
Sbjct: 793  VGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGG 852

Query: 341  ------FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
                    P EVT++ +  ACSH GMVDEG   F  MK  +G+ P+ +H+ C+VDLLGR+
Sbjct: 853  GSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRS 912

Query: 395  GLVKQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            G VK+AYE I  M    N V  W +LLGAC IH      EIA   L  LEP  +  YVL+
Sbjct: 913  GRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLM 972

Query: 454  SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
            SN+Y+    W     VR+ M +  V+K PG S +E G+ V +F  GD SHPQ++E+H  L
Sbjct: 973  SNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYL 1032

Query: 514  AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
              ++++++ EGYVP    V  ++++EEKE  L  HSE++AIAF L+NT PGT +RV KNL
Sbjct: 1033 ETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNL 1092

Query: 574  RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            RVC DCH+A K+ISK+  REI++RD  RFHHF +G CSC DYW
Sbjct: 1093 RVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 188/384 (48%), Gaps = 15/384 (3%)

Query: 53  ASSKHKL---KQVHAFSIRHG-VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI 108
           A++ H L   KQ+HA   + G  P ++  +   L+  +      ++ A  +F  + D + 
Sbjct: 340 AAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLV-NMYGKCGDLTAARQVFDDIPDRDH 398

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL-ADVRMGEQTHS 167
            +WN+MI          L++ L+  M    + P + T   +  A S +   VR+G+Q H+
Sbjct: 399 VSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHA 458

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             +RNG +   +  N+LV MYA  G V DA  +F +   +DLV+WN+VI+  + N +  E
Sbjct: 459 YTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEE 517

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALL 286
           AL     M  +GV PDG T+ S+  AC++L  L +GR  H Y  + G L +N  V  AL+
Sbjct: 518 ALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALV 577

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGE 345
           D Y  C      + VF  + +R    W+ L+ G A N F  +AL LF EM     F P  
Sbjct: 578 DMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNA 637

Query: 346 VTFVGVLYACSHCGMVD--EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            TF  VL AC  C +    EG   +  +K  +G    +++   ++D+  R G V+ + + 
Sbjct: 638 TTFASVLPACVRCKVFSDKEGIHGYI-VKRGFGKDKYVQN--ALMDMYSRMGRVEIS-KT 693

Query: 404 IQNMLMPPNAVIWRTLLGACTIHG 427
           I   +   + V W T++  C + G
Sbjct: 694 IFGRMNKRDIVSWNTMITGCIVCG 717



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 134/250 (53%), Gaps = 4/250 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           W  ++R    S++   A+  Y+ M  +   PD   +P +LKA + + D+ +G+Q H+   
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 171 RNGFE--SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           + G    S V V NSLV+MY   G +  A +VF+ + +RD V+WNS+I       +   +
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           L LFR M SE V+P  +T+VS+  AC+ + G + LG++ H Y  + G       NNAL+ 
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVT 476

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y++ G +  A+ +F     ++ VSW+T++  L+ N   +EAL     M + G  P  VT
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 348 FVGVLYACSH 357
              VL ACS 
Sbjct: 537 LASVLPACSQ 546


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/522 (42%), Positives = 312/522 (59%), Gaps = 6/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           A  +F  +   N+ TW T++   A +      A+     M   G+ P+ +T+  +L A +
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
                 M    H+  ++ G +S VFV++SL+  Y   G +    +VF+ M  RDLV WNS
Sbjct: 183 TPG---MLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNS 239

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I GFA +G    A+ LF  M   G   +  T+ S+  AC  +  L  GR+ H +V K  
Sbjct: 240 IIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK-- 297

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              ++ ++NALLD Y KCG +  A  +F  M +R+ +SWST+V GLA NG   EAL +F 
Sbjct: 298 YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFD 357

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  G  P  VT VGVL+ACSH G+V++G+ YF+ MK  +GI P+ EH  CMVDLLGRA
Sbjct: 358 LMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRA 417

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A E+I  M + P++VIWRTLLGAC +H ++++A  A   +L+LEP   G  VLLS
Sbjct: 418 GKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLS 477

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N YA  ++W + ++  + M    ++K PG S +EL  RV  F  GD SHP ++ I   L 
Sbjct: 478 NTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELN 537

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            +  ++K  GYVP+TE V  D+  E+KED L YHSEK+AI F  ++   G P+R++KNLR
Sbjct: 538 RLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLR 597

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +C DCH   KL+SK   R IV+RD  RFHHF+DG CSC DYW
Sbjct: 598 ICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 4/188 (2%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS-NGKPNEALTLFREMA 236
           +FV NSL  MYA FG + DA ++F+ M  R++V W +V+   AS +G+  EAL     M 
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +GV P+ YT  S+  AC   G L      H    K GL  +V V ++L+D Y K G + 
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLD 220

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
             +RVF EM  R+ V W++++ G A +G G  A+ELF  M+  GF   + T   VL AC+
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280

Query: 357 HCGMVDEG 364
              M++ G
Sbjct: 281 GMVMLEAG 288


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 314/521 (60%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  ++  ++ +W ++I GYA++  P  A+ L   M     KP+  T+  LLKA   
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            AD  +G Q H++A++  +   V+V ++L+ MYA  G +  A  VF+ +  ++ V+WN++
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+GFA  G    AL +F EM   G E   +T  S+FS  A +GAL  G+  H ++ K   
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQ 284

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                V N +LD Y+K G +I A++VF  +  ++ V+W++++   A  G GKEA+  F+E
Sbjct: 285 KLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEE 344

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G    ++TF+ +L ACSH G+V EG  YF  +K EY + P+IEH+  +VDLLGRAG
Sbjct: 345 MRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAG 403

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  A  +I  M M P A +W  LL AC +H ++ + + A   + QL+P  SG  VLL N
Sbjct: 404 LLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYN 463

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W     VR+ M    VKK P  S VE+GN V  F   D +HP+ EEI+ M  E
Sbjct: 464 IYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDE 523

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ K++ EGYVP  + V   ++E+E+E  L YHSEKIA+AF L+    G  +R++KN+R+
Sbjct: 524 ISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRI 583

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISKV+ REIVVRD +RFHHF +G CSC DYW
Sbjct: 584 CGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 6/291 (2%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P    Y   + A ++  ++    + H     + FE   F+ NSL+H+Y   G V +A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           KVF+ M ++D+V+W S+I G+A N  P EA+ L   M     +P+G+T  SL  A     
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
              +G + H    K    ++V V +ALLD Y++CG +  A  VF ++  +N VSW+ L+ 
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
           G A  G G+ AL +F EM+  GF     T+  +    +  G +++G      M       
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKS---R 283

Query: 379 PKIEHF--GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            K+  F    M+D+  ++G +  A +  + +L   + V W ++L A   +G
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVL-NKDLVTWNSMLTAFAQYG 333



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 11/255 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   N  +WN +I G+A   +   A+ ++++M  +G +    TY  +   
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSG 262

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++ +  +  G+  H+  +++  +   FV N+++ MYA  G + DA KVFE +  +DLV W
Sbjct: 263 LAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS++  FA  G   EA++ F EM   G+  +  T + + +AC+  G +  G+     + +
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE 382

Query: 273 VGLSDNVNVNNALLDFYSKCGII-IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             L   +     ++D   + G++  A   +F+   +  A  W  L+           A  
Sbjct: 383 YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------ACR 432

Query: 332 LFKEMEIGGFVPGEV 346
           + K  ++G F    V
Sbjct: 433 MHKNAKVGQFAADHV 447


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/570 (38%), Positives = 348/570 (61%), Gaps = 38/570 (6%)

Query: 85  AIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIK 140
           A+VSL+     M  A ++F  + D +I +WN MI GY ++     A++L+S+M H S + 
Sbjct: 129 AMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA 188

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD  T   +L A + L +VR+G+Q H+  +R        V N+L+  YA  G V++A ++
Sbjct: 189 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 248

Query: 201 ---------------------------------FELMSERDLVAWNSVINGFASNGKPNE 227
                                            F +M+ RD+VAW ++I G+  NG+ +E
Sbjct: 249 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 308

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ LFR M + G EP+ YT+ ++ S CA L  L  G++ H    +  L  + +V+NA++ 
Sbjct: 309 AIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIIT 368

Query: 288 FYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            Y++ G    A+R+F ++  ++  ++W++++V LA +G G+EA+ LF+EM   G  P  +
Sbjct: 369 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 428

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T+VGVL ACSH G V+EG  Y+ ++K+E+ I P++ H+ CMVDLL RAGL  +A E+I+ 
Sbjct: 429 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 488

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+A+ W +LL AC +H ++ +AE+A   LL ++P +SG Y  ++N+Y+   RW + 
Sbjct: 489 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 548

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             + +   ++ V+K  G S   + +++  F   D  HPQ + ++AM A + +++K  G+V
Sbjct: 549 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 608

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P  ++V  D+++E KE+ LS HSEK+AIAF L++T   T +RV+KNLRVC DCH AIK I
Sbjct: 609 PDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAI 668

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SKV  REI+VRD +RFHHF+DG CSC+DYW
Sbjct: 669 SKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 192/485 (39%), Gaps = 107/485 (22%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F+ + + +  +W  M+ G   +     A++    M   G  P   T   +L +
Sbjct: 8   LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 67

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS------- 205
            +      +G + HS  ++ G  S V V NS+++MY   G  + A  VFE M        
Sbjct: 68  CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 127

Query: 206 ------------------------ERDLVAWNSVINGFASNGKPNEALTLFREMASE-GV 240
                                   +R +V+WN++I G+  NG   +AL LF  M  E  +
Sbjct: 128 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 187

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            PD +T+ S+ SACA LG + +G++ H Y+ +  ++ N  V NAL+  Y+K G +  A+R
Sbjct: 188 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 247

Query: 301 V---------------------------------FREMRKRNAVSWSTLVVGLAVNGFGK 327
           +                                 F  M  R+ V+W+ ++VG   NG   
Sbjct: 248 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 307

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----------------------- 364
           EA++LF+ M   G  P   T   VL  C+    +D G                       
Sbjct: 308 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAII 367

Query: 365 --------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNA 413
                   F + +RM D+     +   +  M+  L + G  ++A    + ML   + P+ 
Sbjct: 368 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR 427

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-----GDYVLLSNLYAYEQRWLNVQE 468
           + +  +L AC+   H+      +    Q++ +H        Y  + +L A    +   QE
Sbjct: 428 ITYVGVLSACS---HAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484

Query: 469 VRRTM 473
             R M
Sbjct: 485 FIRRM 489



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 40/270 (14%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           M+A  G + DA  VF  M ERD V+W  ++ G    G+  EA+    +M ++G  P  +T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI------------ 294
           + ++ S+CA   A A+GR+ H++V K+GL   V V N++L+ Y KCG             
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 295 -------------------IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                              +  A+ +F  M  R+ VSW+ ++ G   NG   +AL+LF  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           M       P E T   VL AC++ G V  G    +Y  R +  Y      +    ++   
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAY----NSQVTNALISTY 236

Query: 392 GRAGLVKQAYEYI-QNMLMPPNAVIWRTLL 420
            ++G V+ A   + Q+M    N + +  LL
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALL 266


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 338/579 (58%), Gaps = 8/579 (1%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
           +S +R C +L      S    KQ+H  +++ G+  +   +G  L   + S    M  A  
Sbjct: 45  SSAIRACASL-----GSIEMGKQMHCLALKFGIG-SELFVGSNL-EDMYSKCGAMFDACK 97

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   +  +W  MI GY++      A+  + KM    +  D H     L A   L  
Sbjct: 98  VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 157

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVIN 217
            + G   HS  ++ GFES +FV N+L  MY+  G ++ A  VF + SE R++V++  +I+
Sbjct: 158 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 217

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+    +  + L++F E+  +G+EP+ +T  SL  ACA   AL  G + H  V K+   +
Sbjct: 218 GYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDE 277

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  V++ L+D Y KCG++  A + F E+     ++W++LV     +G GK+A+++F+ M 
Sbjct: 278 DPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMV 337

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P  +TF+ +L  CSH G+V+EG  YF  M   YG++P  EH+ C++DLLGRAG +
Sbjct: 338 DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRL 397

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           K+A E+I  M   PNA  W + LGAC IHG   + ++A   L++LEPK+SG  VLLSN+Y
Sbjct: 398 KEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 457

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A E++W +V+ VR  M    VKK PG+S V++G +   F   D SHP+   I+  L  + 
Sbjct: 458 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLL 517

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            ++K  GYVPRT++V  D+++  KE  L  HSE+IA+AF L++   G P+ V KNLRVC 
Sbjct: 518 DQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 577

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH AIK ISKV  R+I+VRD SRFHHF DG CSC DYW
Sbjct: 578 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 171/323 (52%), Gaps = 5/323 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ +W  MI G ++++    A+  +  M + G  P    +   ++A + L  + MG+Q H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
            +A++ G  S +FV ++L  MY+  G + DACKVFE M  +D V+W ++I+G++  G+  
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 124

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           EAL  F++M  E V  D + + S   AC  L A   GR  H+ V K+G   ++ V NAL 
Sbjct: 125 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 184

Query: 287 DFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           D YSK G + +A  VF  +   RN VS++ L+ G       ++ L +F E+   G  P E
Sbjct: 185 DMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 244

Query: 346 VTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            TF  ++ AC++   +++G   + + MK  +   P +     +VD+ G+ GL++QA +  
Sbjct: 245 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAF 302

Query: 405 QNMLMPPNAVIWRTLLGACTIHG 427
              +  P  + W +L+     HG
Sbjct: 303 DE-IGDPTEIAWNSLVSVFGQHG 324



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 77/133 (57%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M +R+LV+W ++I+G + N K +EA+  F  M   G  P  +   S   ACA LG++ +G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           ++ H    K G+   + V + L D YSKCG +  A +VF EM  ++ VSW+ ++ G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 324 GFGKEALELFKEM 336
           G  +EAL  FK+M
Sbjct: 121 GEFEEALLAFKKM 133



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M +RN VSW+ ++ GL+ N    EA+  F  M I G VP +  F   + AC+  G ++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
                 +  ++GI  ++     + D+  + G +  A +  + M    + V W  +     
Sbjct: 61  -KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAM----- 113

Query: 425 IHGHSAIAEIARSTL 439
           I G+S I E   + L
Sbjct: 114 IDGYSKIGEFEEALL 128


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/580 (37%), Positives = 340/580 (58%), Gaps = 13/580 (2%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYA 96
            S+++ CI L  +        +Q+H+  I+    LN      Y+   ++ +   +     A
Sbjct: 455  SILKTCIRLGDLELG-----EQIHSQIIKTNFQLN-----AYVCSVLIDMYAKLGKLDTA 504

Query: 97   HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +I       ++ +W TMI GY +      A+  + +M   GI+ D       + A + L
Sbjct: 505  WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 564

Query: 157  ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
              ++ G+Q H+ A  +GF S +  QN+LV +Y+  G ++++   FE     D +AWN+++
Sbjct: 565  QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 624

Query: 217  NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            +GF  +G   EAL +F  M  EG++ + +T  S   A +E   +  G++ H  + K G  
Sbjct: 625  SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 684

Query: 277  DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
                V NAL+  Y+KCG I  A++ F E+  +N VSW+ ++   + +GFG EAL+ F +M
Sbjct: 685  SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 744

Query: 337  EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                  P  VT VGVL ACSH G+VD+G +YF+ M  EYG+ PK EH+ C+VD+L RAGL
Sbjct: 745  IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 804

Query: 397  VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            + +A E+IQ M + P+A++WRTLL AC +H +  I E A   LL+LEP+ S  YVLLSNL
Sbjct: 805  LSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 864

Query: 457  YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
            YA  ++W      R+ M ++ VKK PG S +E+ N +  F++GD++HP  +EIH    ++
Sbjct: 865  YAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDL 924

Query: 517  TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            TK+    GYV    ++  +++ E+K+  +  HSEK+AI+F L++     P+ V+KNLRVC
Sbjct: 925  TKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 984

Query: 577  ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             DCH  IK +SKV +REI+VRD  RFHHF+ G CSC+DYW
Sbjct: 985  NDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 187/373 (50%), Gaps = 18/373 (4%)

Query: 59  LKQVHAF----SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           ++Q+HA      +R    + NP +  Y     V L      A  +F  ++  +  +W  M
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL------ARRVFDGLRLKDHSSWVAM 219

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I G +++     A+ L+  M+V GI P  + +  +L A  K+  + +GEQ H + ++ GF
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 279

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            S  +V N+LV +Y   G++  A  +F  MS+RD V +N++ING +  G   +A+ LF+ 
Sbjct: 280 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 339

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  +G+EPD  T+ SL  AC+  G L  G++ H Y  K+G + N  +  ALL+ Y+KC  
Sbjct: 340 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A   F E    N V W+ ++V   +    + +  +F++M+I   VP + T+  +L  
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 355 CSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPP 411
           C   G ++ G     + +K  +    ++  + C  ++D+  + G +  A++ I       
Sbjct: 460 CIRLGDLELGEQIHSQIIKTNF----QLNAYVCSVLIDMYAKLGKLDTAWD-ILIRFAGK 514

Query: 412 NAVIWRTLLGACT 424
           + V W T++   T
Sbjct: 515 DVVSWTTMIAGYT 527



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 177/374 (47%), Gaps = 6/374 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA++ + G   NN   G  L +YA  +    +  A + F   +  N+  WN M+  Y
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCA---DIETALDYFLETEVENVVLWNVMLVAY 425

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
               +   +  ++ +M +  I P+ +TYP +LK   +L D+ +GEQ HS  I+  F+   
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V + L+ MYA  G +  A  +    + +D+V+W ++I G+      ++ALT FR+M   
Sbjct: 486 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+  D   + +  SACA L AL  G++ H      G S ++   NAL+  YS+CG I  +
Sbjct: 546 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              F +    + ++W+ LV G   +G  +EAL +F  M   G      TF   + A S  
Sbjct: 606 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 665

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
             + +G      +  + G   + E    ++ +  + G +  A +     +   N V W  
Sbjct: 666 ANMKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE-VSTKNEVSWNA 723

Query: 419 LLGACTIHGHSAIA 432
           ++ A + HG  + A
Sbjct: 724 IINAYSKHGFGSEA 737



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 13/333 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-- 153
           A  +F  + +  IFTWN MI+  A          L+ +M    + P+  T+  +L+A   
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 154 -SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S   DV   EQ H+  +  G      V N L+ +Y+  G V  A +VF+ +  +D  +W
Sbjct: 159 GSVAFDVV--EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 216

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I+G + N    EA+ LF +M   G+ P  Y   S+ SAC ++ +L +G + H  V K
Sbjct: 217 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 276

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           +G S +  V NAL+  Y   G +I+A+ +F  M +R+AV+++TL+ GL+  G+G++A+EL
Sbjct: 277 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 336

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVD 389
           FK M + G  P   T   ++ ACS  G +  G    +Y  ++   +    KIE  G +++
Sbjct: 337 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG--FASNNKIE--GALLN 392

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           L  +   ++ A +Y     +  N V+W  +L A
Sbjct: 393 LYAKCADIETALDYFLETEV-ENVVLWNVMLVA 424



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 10/373 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++ G   +      Y+  A+VSL F +     A +IFS++   +  T+NT+I 
Sbjct: 268 EQLHGLVLKLGFSSDT-----YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 322

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G ++      A+EL+ +MH+ G++PD++T   L+ A S    +  G+Q H+   + GF S
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 382

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              ++ +L+++YA    ++ A   F      ++V WN ++  +        +  +FR+M 
Sbjct: 383 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 442

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E + P+ YT  S+   C  LG L LG + H+ + K     N  V + L+D Y+K G + 
Sbjct: 443 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 502

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +      ++ VSW+T++ G     F  +AL  F++M   G    EV     + AC+
Sbjct: 503 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 562

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
               + EG           G    +     +V L  R G ++++Y   +      N + W
Sbjct: 563 GLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAW 620

Query: 417 RTLLGACTIHGHS 429
             L+      G++
Sbjct: 621 NALVSGFQQSGNN 633



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 20/318 (6%)

Query: 138 GIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           GI+P+  T  +LL+   K    +  G + HS  ++ G +S   +   L   Y   G +  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A KVF+ M ER +  WN +I   AS     E   LF  M SE V P+  T   +  AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 257 LGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
            G++A     + H  +   GL D+  V N L+D YS+ G +  A+RVF  +R ++  SW 
Sbjct: 159 -GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GL+ N    EA+ LF +M + G +P    F  VL AC     ++ G       +  
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-------EQL 270

Query: 375 YGIMPKI----EHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI--H 426
           +G++ K+    + + C  +V L    G +  A E+I + +   +AV + TL+   +   +
Sbjct: 271 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISA-EHIFSNMSQRDAVTYNTLINGLSQCGY 329

Query: 427 GHSAIAEIARSTLLQLEP 444
           G  A+    R  L  LEP
Sbjct: 330 GEKAMELFKRMHLDGLEP 347



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 237 SEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           + G+ P+  T+  L   C +  G+L  GR+ H+ + K+GL  N  ++  L DFY   G +
Sbjct: 37  NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 96

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A +VF EM +R   +W+ ++  LA      E   LF  M      P E TF GVL AC
Sbjct: 97  YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 156


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/513 (42%), Positives = 328/513 (63%), Gaps = 8/513 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+ N   A+EL+ +M  + +KPD  T   ++ A ++
Sbjct: 160 AQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQ 219

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF S + + N+L+ +Y+  G V+ AC++ E +S +D+++WN++
Sbjct: 220 SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTL 279

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--- 272
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 280 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 339

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEAL 330
            V +++  ++  +L+D Y+KCG I AA +V       R+  +W+ ++ G A++G    A 
Sbjct: 340 GVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAF 399

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++F  M   G  P ++TFVG+L ACSH GM+D G + F+ M+ +Y I PK+EH+GCM+DL
Sbjct: 400 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDL 459

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           LG +GL K+A E I  M M P+ VIW +LL AC IHG+  + E     L+++EP++ G Y
Sbjct: 460 LGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSY 519

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKER--VKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
           VLLSN+YA   +W  V ++ RT++ ++   KK PG S +E+ + V EF +GD+ HPQ  E
Sbjct: 520 VLLSNIYATAGKWNEVXKI-RTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNRE 578

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I+ ML E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + 
Sbjct: 579 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 638

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           +VKNLRVC +CH A KLISK+Y REI+ RDR+R
Sbjct: 639 IVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 200/388 (51%), Gaps = 35/388 (9%)

Query: 80  KYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG 138
           + L + I+S  F  + YA ++F  + +PN   WN M RG+A S++P+ A++LY  M   G
Sbjct: 11  QLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLG 70

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P+  T+PFLLK+ +K    + G+Q H   ++ GF+  ++V  SL+ MYA  G ++DA 
Sbjct: 71  LLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQ 130

Query: 199 KVFELMSERDLVA-------------------------------WNSVINGFASNGKPNE 227
           KVF+  S RD+V+                               WN++I+G+A  G   +
Sbjct: 131 KVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKK 190

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           AL LF+EM    V+PD  TM ++ SACA+ G++ LGR+ H+++   G   N+ + NAL+D
Sbjct: 191 ALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALID 250

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            YSKCG +  A  +   +  ++ +SW+TL+ G       KEAL LF+EM   G  P +VT
Sbjct: 251 LYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 310

Query: 348 FVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            + +L AC+H G +D G     Y  +      +         ++D+  + G +  A +  
Sbjct: 311 MLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVS 370

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +     +   W  ++    +HG +  A
Sbjct: 371 DSSAFNRSLSTWNAMIFGFAMHGRANAA 398


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/524 (41%), Positives = 322/524 (61%), Gaps = 14/524 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAI 153
           A  +F      ++FTW  M+ GY ++     A EL+ KM      P+ +  ++  +L   
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM------PERNEVSWNAMLAGY 322

Query: 154 SKLADVRMGEQTHSV-AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   + M ++   V   RN     V   N+++  YA  G + +A  +F+ M +RD V+W
Sbjct: 323 VQGERMEMAKELFDVMPCRN-----VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW 377

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G++ +G   EAL LF +M  EG   +  +  S  S CA++ AL LG++ H  + K
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V NALL  Y KCG I  A  +F+EM  ++ VSW+T++ G + +GFG+ AL  
Sbjct: 438 GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRF 497

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M+  G  P + T V VL ACSH G+VD+G  YF  M  +YG+MP  +H+ CMVDLLG
Sbjct: 498 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL++ A+  ++NM   P+A IW TLLGA  +HG++ +AE A   +  +EP++SG YVL
Sbjct: 558 RAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVL 617

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNLYA   RW +V ++R  M  + VKK PG+S +E+ N+   F +GD  HP+ +EI A 
Sbjct: 618 LSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAF 677

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+  ++K  GYV +T  V  D+EEEEKE  + YHSE++A+A+ ++  + G P+RV+KN
Sbjct: 678 LEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKN 737

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ++++  R I++RD +RFHHFKDG CSC DYW
Sbjct: 738 LRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 127/234 (54%), Gaps = 2/234 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A N+F  +   +  +W  MI GY++S +   A+ L+ +M   G + +  ++   L  
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + +  + +G+Q H   ++ G+E+  FV N+L+ MY   G +++A  +F+ M+ +D+V+W
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 478

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           N++I G++ +G    AL  F  M  EG++PD  TMV++ SAC+  G +  GR+  +T   
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
             G+  N      ++D   + G++  A  + + M  + +A  W TL+    V+G
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 140/342 (40%), Gaps = 73/342 (21%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +WN MI+GY  + N   A EL+       I P              
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE------IMP-------------- 153

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                              E  V   N+++  YA  G V DA  VF+ M E++ V+WN++
Sbjct: 154 -------------------ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR---AHTYVWK 272
           ++ +  N K  EA  LF+   +           +L S    LG     ++   A  +   
Sbjct: 195 LSAYVQNSKMEEACMLFKSREN----------WALVSWNCLLGGFVKKKKIVEARQFFDS 244

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           + + D V+  N ++  Y++ G I  A+++F E   ++  +W+ +V G   N   +EA EL
Sbjct: 245 MNVRDVVSW-NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM---KDEYGIMP--KIEHFGCM 387
           F +M        EV++  +L           G+   +RM   K+ + +MP   +  +  M
Sbjct: 304 FDKMP----ERNEVSWNAML----------AGYVQGERMEMAKELFDVMPCRNVSTWNTM 349

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           +    + G + +A      M    + V W  ++   +  GHS
Sbjct: 350 ITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHS 390



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 51/273 (18%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF-----REMA 236
           N  +  Y   G   +A +VF+ M     V++N +I+G+  NG+   A  LF     R++ 
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           S  V   GY          EL  +   R   ++             N +L  Y++ G + 
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDVCSW-------------NTMLSGYAQNGCVD 174

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME----------IGGFVPGE- 345
            A+ VF  M ++N VSW+ L+     N   +EA  LFK  E          +GGFV  + 
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234

Query: 346 ----------------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
                           V++  ++   +  G +DE    F    DE  +   +  +  MV 
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESPVQD-VFTWTAMVS 289

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
              +  +V++A E    M    N V W  +L  
Sbjct: 290 GYIQNRMVEEARELFDKMP-ERNEVSWNAMLAG 321


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 310/547 (56%), Gaps = 35/547 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +PN+ TWN ++ G   S     AV    +MH  G  PD       L A+  + DV +GEQ
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL--------------- 209
            H   ++ G      V  +L+ MY   G   +  +VF+  S  D+               
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 210 --------------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                               V+W S++     NG+  EA+ LFREM SEG+EP+  T+  
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPC 297

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  A A + AL  GR AH +  + G   ++ V +AL+D Y+KCG +  A+ +F  M  RN
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRN 357

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            VSW+ ++ G A++G  + A+ LF+ M+     P  VTF  VL ACS  G  +EG SYF 
Sbjct: 358 VVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFN 417

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M+ ++GI P++EH+ CMV LLGRAG +  AY+ I  M   P+  IW +LLG+C +HG+ 
Sbjct: 418 EMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNV 477

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +AE+A   L QLEP+++G+YVLLSN+YA ++ W  V  +R  M    +KK  G S +E+
Sbjct: 478 VLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEI 537

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
            N+V     GD SHP    I   L  +T +++  G+ P T+ V  D+EE+EK+D LS HS
Sbjct: 538 KNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHS 597

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+A  L++T+ GTP++V+KNLR+C DCH A+K IS    REI VRD +RFHHFKDG 
Sbjct: 598 EKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGK 657

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 658 CSCADYW 664



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 138/365 (37%), Gaps = 76/365 (20%)

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           HVS   PD    P  LK+ S L         H+ A   G     FV +SL+H Y  FG  
Sbjct: 16  HVS-FPPDPRLLPSALKSCSALRLA---RALHAAAAVAGVSRDAFVASSLLHAYLRFGAT 71

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL---- 250
            DA  V + M  R +V W+++I   AS+G    A  L   M S+GVEP+  T   L    
Sbjct: 72  ADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGL 131

Query: 251 -------------------------------FSACAELGALALGRRAHTYVWKVGLSDNV 279
                                           SA  ++G +A+G + H YV K G   + 
Sbjct: 132 NRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDA 191

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  AL+D Y KCG      RVF E    +  S + LV GL+ N    EAL LF+E    
Sbjct: 192 CVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGR 251

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC------------- 386
           G     V++  ++  C   G   E    F+ M+ E GI P      C             
Sbjct: 252 GIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GIEPNSVTIPCVLPAFANIAALMH 310

Query: 387 ----------------------MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
                                 +VD+  + G V+ A    + M    N V W  ++G   
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY-RNVVSWNAMIGGYA 369

Query: 425 IHGHS 429
           +HG +
Sbjct: 370 MHGEA 374



 Score = 45.4 bits (106), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIR 116
           +  H FS+R G    + D+  Y+  A+V +         A  IF  +   N+ +WN MI 
Sbjct: 312 RSAHCFSLRKGF---HHDI--YVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIG 366

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT-HSVAIRNGFE 175
           GYA       AV L+  M  S  KPD  T+  +L A S+      G    + +  ++G  
Sbjct: 367 GYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGIS 426

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEALTLFRE 234
             +     +V +    G + DA  +   M  E D   W S++     +G       +  E
Sbjct: 427 PRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN-----VVLAE 481

Query: 235 MASEG---VEPD 243
           +A+E    +EP+
Sbjct: 482 VAAENLFQLEPE 493


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 348/618 (56%), Gaps = 45/618 (7%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E+ I + +  C  L Q+        KQVHA  + +G+  +   L K LI  +  L+ P+ 
Sbjct: 46  ESQIVTTLDGCKNLTQI--------KQVHARILLNGLDQSCYVLAK-LIRTLTKLNIPVD 96

Query: 95  -YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            Y  +IF+ V  PN F +N +IRGY        + E YS M   G+ P + T+  L KA 
Sbjct: 97  PYPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKAC 156

Query: 154 SKLADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---- 208
               DV +G Q H   I   GF   + V NS++ MY   G ++   KVF+ M  RD    
Sbjct: 157 GAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISW 216

Query: 209 ---------------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
                                      +VAW  +++GFA N KP EA+  F +M   GVE
Sbjct: 217 TELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE 276

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWK--VGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            D  T++ + SACA+LGA            K   G   +V V +AL+D YSKCG +  A 
Sbjct: 277 TDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RVF+ M++RN  S+S++++G A++G   +A++LF EM      P  VTF+GVL ACSH G
Sbjct: 337 RVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAG 396

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           MV++G+  F+ M+  YGI P  +H+ CMVDLLGRAG +++A+E ++ M + P+  +W  L
Sbjct: 397 MVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGAL 456

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IH    IA IA + L +LEP   G+Y+LL+N+YA   RW +V  VR+ M    ++
Sbjct: 457 LGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLR 516

Query: 480 KTPGHSLVEL-GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           K P  S +E     V EFF GD +HP++ EI   L ++  +L+ +GY P   +V  D+ +
Sbjct: 517 KNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVND 576

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           E+K   L  HSEK+A+AF L++T PG+ +R+VKNLR+C DCH  I   S++  REI+VRD
Sbjct: 577 EDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRD 636

Query: 599 RSRFHHFKDGHCSCRDYW 616
             RFHHF DG CSC ++W
Sbjct: 637 IMRFHHFHDGICSCGNFW 654


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/557 (40%), Positives = 322/557 (57%), Gaps = 15/557 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + V +++I  G  + N DLG                A  +F  + + N+ TWN M+ G  
Sbjct: 105 RNVMSWNILFGGYIKNGDLGG---------------ARKLFDEMPERNVATWNAMVAGLT 149

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  ++  +  M   G+ PD      + +  + L DV  G Q H+  +R+G +  + 
Sbjct: 150 NLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMC 209

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V +SL HMY   G +++   V  ++    +V+ N++I G   NG    AL  F  M S G
Sbjct: 210 VGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVG 269

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V  D  T VS  S+C++L ALA G++ H  V K G+   V V   L+  YS+CG +  ++
Sbjct: 270 VAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSE 329

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RVF      +    S ++     +G G++A+ELFK+M  GG  P +VTF+ +LYACSH G
Sbjct: 330 RVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSG 389

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           + +EG   F+ M   YG+ P ++H+ C+VDLLGR+G + +A   I +M + P+ VIW+TL
Sbjct: 390 LKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTL 449

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L AC    +  +AE     +++L+P  S  YVLLSN+ A  +RW +V EVR+ M    V+
Sbjct: 450 LSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVR 509

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S VEL   + +F  GD SHP+ +EI   L E+  K++  GY P    V  D+E+E
Sbjct: 510 KEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE 569

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE +LS+HSEK+AIAF  ++   G P+RV+KNLRVC DCHLAIKL+S+V  REIVVRD 
Sbjct: 570 EKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDV 629

Query: 600 SRFHHFKDGHCSCRDYW 616
           SRFHHFKDG CSCRDYW
Sbjct: 630 SRFHHFKDGRCSCRDYW 646



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +  L +A   L  +R   Q H+ A  +G  +  F  N L+  YA  G +  A ++FE + 
Sbjct: 47  FSHLFRACRALRPLR---QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 103

Query: 206 ERDLVAWNSVINGFASNGK-------------------------------PNEALTLFRE 234
            R++++WN +  G+  NG                                  E+L  F +
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  EG+ PD + + S+F  CA L  +  GR+ H YV + GL  ++ V ++L   Y +CG 
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 223

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +   + V R +   + VS +T++ G   NG  + ALE F  M   G     VTFV  + +
Sbjct: 224 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 283

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CS    + +G     ++  + G+   +    C+V +  R G +  + E +       +  
Sbjct: 284 CSDLAALAQGQQIHGQVM-KAGVDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTF 341

Query: 415 IWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +   ++ A   HGH   AI    +      EP    D   L+ LYA
Sbjct: 342 LLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS---DVTFLALLYA 384


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/557 (40%), Positives = 322/557 (57%), Gaps = 15/557 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + V +++I  G  + N DLG                A  +F  + + N+ TWN M+ G  
Sbjct: 167 RNVMSWNILFGGYIKNGDLGG---------------ARKLFDEMPERNVATWNAMVAGLT 211

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  ++  +  M   G+ PD      + +  + L DV  G Q H+  +R+G +  + 
Sbjct: 212 NLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMC 271

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V +SL HMY   G +++   V  ++    +V+ N++I G   NG    AL  F  M S G
Sbjct: 272 VGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVG 331

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V  D  T VS  S+C++L ALA G++ H  V K G+   V V   L+  YS+CG +  ++
Sbjct: 332 VAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSE 391

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RVF      +    S ++     +G G++A+ELFK+M  GG  P +VTF+ +LYACSH G
Sbjct: 392 RVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSG 451

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           + +EG   F+ M   YG+ P ++H+ C+VDLLGR+G + +A   I +M + P+ VIW+TL
Sbjct: 452 LKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTL 511

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L AC    +  +AE     +++L+P  S  YVLLSN+ A  +RW +V EVR+ M    V+
Sbjct: 512 LSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVR 571

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S VEL   + +F  GD SHP+ +EI   L E+  K++  GY P    V  D+E+E
Sbjct: 572 KEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE 631

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE +LS+HSEK+AIAF  ++   G P+RV+KNLRVC DCHLAIKL+S+V  REIVVRD 
Sbjct: 632 EKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDV 691

Query: 600 SRFHHFKDGHCSCRDYW 616
           SRFHHFKDG CSCRDYW
Sbjct: 692 SRFHHFKDGRCSCRDYW 708



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +  L +A   L  +R   Q H+ A  +G  +  F  N L+  YA  G +  A ++FE + 
Sbjct: 109 FSHLFRACRALRPLR---QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 165

Query: 206 ERDLVAWNSVINGFASNGK-------------------------------PNEALTLFRE 234
            R++++WN +  G+  NG                                  E+L  F +
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  EG+ PD + + S+F  CA L  +  GR+ H YV + GL  ++ V ++L   Y +CG 
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 285

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +   + V R +   + VS +T++ G   NG  + ALE F  M   G     VTFV  + +
Sbjct: 286 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 345

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CS    + +G     ++  + G+   +    C+V +  R G +  + E +       +  
Sbjct: 346 CSDLAALAQGQQIHGQVM-KAGVDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTF 403

Query: 415 IWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +   ++ A   HGH   AI    +      EP    D   L+ LYA
Sbjct: 404 LLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS---DVTFLALLYA 446


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 338/579 (58%), Gaps = 8/579 (1%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
           +S +R C +L      S    KQ+H  +++ G+  +   +G  L   + S    M  A  
Sbjct: 110 SSAIRACASL-----GSIEMGKQMHCLALKFGIG-SELFVGSNL-EDMYSKCGAMFDACK 162

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   +  +W  MI GY++      A+  + KM    +  D H     L A   L  
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVIN 217
            + G   HS  ++ GFES +FV N+L  MY+  G ++ A  VF + SE R++V++  +I+
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+    +  + L++F E+  +G+EP+ +T  SL  ACA   AL  G + H  V K+   +
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDE 342

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  V++ L+D Y KCG++  A + F E+     ++W++LV     +G GK+A+++F+ M 
Sbjct: 343 DPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMV 402

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P  +TF+ +L  CSH G+V+EG  YF  M   YG++P  EH+ C++DLLGRAG +
Sbjct: 403 DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRL 462

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           K+A E+I  M   PNA  W + LGAC IHG   + ++A   L++LEPK+SG  VLLSN+Y
Sbjct: 463 KEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 522

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A E++W +V+ VR  M    VKK PG+S V++G +   F   D SHP+   I+  L  + 
Sbjct: 523 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLL 582

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            ++K  GYVPRT++V  D+++  KE  L  HSE+IA+AF L++   G P+ V KNLRVC 
Sbjct: 583 DQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 642

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH AIK ISKV  R+I+VRD SRFHHF DG CSC DYW
Sbjct: 643 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 198/385 (51%), Gaps = 11/385 (2%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHG-VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++Q  A +K   + KQ+HA  I  G  P     L  +L+  + S    + +A  +F  + 
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTF--LTNHLV-NMYSKCGELDHALKLFDTMP 67

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+ +W  MI G ++++    A+  +  M + G  P    +   ++A + L  + MG+Q
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H +A++ G  S +FV ++L  MY+  G + DACKVFE M  +D V+W ++I+G++  G+
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  F++M  E V  D + + S   AC  L A   GR  H+ V K+G   ++ V NA
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 285 LLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           L D YSK G + +A  VF  +   RN VS++ L+ G       ++ L +F E+   G  P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            E TF  ++ AC++   +++G   + + MK  +   P +     +VD+ G+ GL++QA +
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQ 365

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
                +  P  + W +L+     HG
Sbjct: 366 AFDE-IGDPTEIAWNSLVSVFGQHG 389



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 112/195 (57%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           DT+    +++  +K   +R G+Q H++ I  G+    F+ N LV+MY+  G +  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + M +R+LV+W ++I+G + N K +EA+  F  M   G  P  +   S   ACA LG++ 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           +G++ H    K G+   + V + L D YSKCG +  A +VF EM  ++ VSW+ ++ G +
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 322 VNGFGKEALELFKEM 336
             G  +EAL  FK+M
Sbjct: 184 KIGEFEEALLAFKKM 198



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A+   L  G++ H  +   G +    + N L++ YSKCG +  A ++F  M +RN VSW+
Sbjct: 16  AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWT 75

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GL+ N    EA+  F  M I G VP +  F   + AC+  G ++ G      +  +
Sbjct: 76  AMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG-KQMHCLALK 134

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           +GI  ++     + D+  + G +  A +  + M    + V W  +     I G+S I E 
Sbjct: 135 FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAM-----IDGYSKIGEF 188

Query: 435 ARSTL 439
             + L
Sbjct: 189 EEALL 193


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/580 (37%), Positives = 340/580 (58%), Gaps = 13/580 (2%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYA 96
            S+++ CI L  +        +Q+H+  I+    LN      Y+   ++ +   +     A
Sbjct: 495  SILKTCIRLGDLELG-----EQIHSQIIKTNFQLN-----AYVCSVLIDMYAKLGKLDTA 544

Query: 97   HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +I       ++ +W TMI GY +      A+  + +M   GI+ D       + A + L
Sbjct: 545  WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604

Query: 157  ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
              ++ G+Q H+ A  +GF S +  QN+LV +Y+  G ++++   FE     D +AWN+++
Sbjct: 605  QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664

Query: 217  NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            +GF  +G   EAL +F  M  EG++ + +T  S   A +E   +  G++ H  + K G  
Sbjct: 665  SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 724

Query: 277  DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
                V NAL+  Y+KCG I  A++ F E+  +N VSW+ ++   + +GFG EAL+ F +M
Sbjct: 725  SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 784

Query: 337  EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                  P  VT VGVL ACSH G+VD+G +YF+ M  EYG+ PK EH+ C+VD+L RAGL
Sbjct: 785  IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 844

Query: 397  VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            + +A E+IQ M + P+A++WRTLL AC +H +  I E A   LL+LEP+ S  YVLLSNL
Sbjct: 845  LSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 904

Query: 457  YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
            YA  ++W      R+ M ++ VKK PG S +E+ N +  F++GD++HP  +EIH    ++
Sbjct: 905  YAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDL 964

Query: 517  TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            TK+    GYV    ++  +++ E+K+  +  HSEK+AI+F L++     P+ V+KNLRVC
Sbjct: 965  TKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 1024

Query: 577  ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             DCH  IK +SKV +REI+VRD  RFHHF+ G CSC+DYW
Sbjct: 1025 NDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 187/373 (50%), Gaps = 18/373 (4%)

Query: 59  LKQVHAF----SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           ++Q+HA      +R    + NP +  Y     V L      A  +F  ++  +  +W  M
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL------ARRVFDGLRLKDHSSWVAM 259

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I G +++     A+ L+  M+V GI P  + +  +L A  K+  + +GEQ H + ++ GF
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            S  +V N+LV +Y   G++  A  +F  MS+RD V +N++ING +  G   +A+ LF+ 
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  +G+EPD  T+ SL  AC+  G L  G++ H Y  K+G + N  +  ALL+ Y+KC  
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           I  A   F E    N V W+ ++V   +    + +  +F++M+I   VP + T+  +L  
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 355 CSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPP 411
           C   G ++ G     + +K  +    ++  + C  ++D+  + G +  A++ I       
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNF----QLNAYVCSVLIDMYAKLGKLDTAWD-ILIRFAGK 554

Query: 412 NAVIWRTLLGACT 424
           + V W T++   T
Sbjct: 555 DVVSWTTMIAGYT 567



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 177/374 (47%), Gaps = 6/374 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA++ + G   NN   G  L +YA  +    +  A + F   +  N+  WN M+  Y
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCA---DIETALDYFLETEVENVVLWNVMLVAY 465

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
               +   +  ++ +M +  I P+ +TYP +LK   +L D+ +GEQ HS  I+  F+   
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V + L+ MYA  G +  A  +    + +D+V+W ++I G+      ++ALT FR+M   
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+  D   + +  SACA L AL  G++ H      G S ++   NAL+  YS+CG I  +
Sbjct: 586 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              F +    + ++W+ LV G   +G  +EAL +F  M   G      TF   + A S  
Sbjct: 646 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
             + +G      +  + G   + E    ++ +  + G +  A +     +   N V W  
Sbjct: 706 ANMKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE-VSTKNEVSWNA 763

Query: 419 LLGACTIHGHSAIA 432
           ++ A + HG  + A
Sbjct: 764 IINAYSKHGFGSEA 777



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 13/333 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-- 153
           A  +F  + +  IFTWN MI+  A          L+ +M    + P+  T+  +L+A   
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 154 -SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S   DV   EQ H+  +  G      V N L+ +Y+  G V  A +VF+ +  +D  +W
Sbjct: 199 GSVAFDVV--EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I+G + N    EA+ LF +M   G+ P  Y   S+ SAC ++ +L +G + H  V K
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           +G S +  V NAL+  Y   G +I+A+ +F  M +R+AV+++TL+ GL+  G+G++A+EL
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVD 389
           FK M + G  P   T   ++ ACS  G +  G    +Y  ++   +    KIE  G +++
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG--FASNNKIE--GALLN 432

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           L  +   ++ A +Y     +  N V+W  +L A
Sbjct: 433 LYAKCADIETALDYFLETEV-ENVVLWNVMLVA 464



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 10/373 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++ G   +      Y+  A+VSL F +     A +IFS++   +  T+NT+I 
Sbjct: 308 EQLHGLVLKLGFSSDT-----YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 362

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G ++      A+EL+ +MH+ G++PD++T   L+ A S    +  G+Q H+   + GF S
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              ++ +L+++YA    ++ A   F      ++V WN ++  +        +  +FR+M 
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 482

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E + P+ YT  S+   C  LG L LG + H+ + K     N  V + L+D Y+K G + 
Sbjct: 483 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +      ++ VSW+T++ G     F  +AL  F++M   G    EV     + AC+
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
               + EG           G    +     +V L  R G ++++Y   +      N + W
Sbjct: 603 GLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAW 660

Query: 417 RTLLGACTIHGHS 429
             L+      G++
Sbjct: 661 NALVSGFQQSGNN 673



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 20/318 (6%)

Query: 138 GIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           GI+P+  T  +LL+   K    +  G + HS  ++ G +S   +   L   Y   G +  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A KVF+ M ER +  WN +I   AS     E   LF  M SE V P+  T   +  AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 257 LGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
            G++A     + H  +   GL D+  V N L+D YS+ G +  A+RVF  +R ++  SW 
Sbjct: 199 -GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GL+ N    EA+ LF +M + G +P    F  VL AC     ++ G       +  
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-------EQL 310

Query: 375 YGIMPKI----EHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI--H 426
           +G++ K+    + + C  +V L    G +  A E+I + +   +AV + TL+   +   +
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISA-EHIFSNMSQRDAVTYNTLINGLSQCGY 369

Query: 427 GHSAIAEIARSTLLQLEP 444
           G  A+    R  L  LEP
Sbjct: 370 GEKAMELFKRMHLDGLEP 387



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 237 SEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           + G+ P+  T+  L   C +  G+L  GR+ H+ + K+GL  N  ++  L DFY   G +
Sbjct: 77  NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A +VF EM +R   +W+ ++  LA      E   LF  M      P E TF GVL AC
Sbjct: 137 YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 317/547 (57%), Gaps = 35/547 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + NI +WN ++ G+  S     AV ++ K+H  G  PD  T   +L ++     + MG  
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHV------------------------------ 194
            H   I+ G      V ++++ MY   GHV                              
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 195 -KDACKVFELMSER----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
              A ++FEL  E+    ++V+W S+I G A NGK  EAL LFREM   GV+P+  T+ S
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  AC  + AL  GR  H +  +V L DNV+V +AL+D Y+KCG I  +Q VF  M  +N
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            V W++L+ G +++G  KE + +F+ +      P  ++F  +L AC   G+ DEG+ YFK
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M +EYGI P++EH+ CMV+LLGRAG +++AY+ I+ M   P++ +W  LL +C +  + 
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +AEIA   L  LEP++ G YVLLSN+YA +  W  V  +R  M    +KK PG S +++
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
            NRV+    GD+SHPQ ++I   + EI+K+++  G+ P  +    D+EE+E+E  L  HS
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHS 693

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+ F L+NT  GTP++V+KNLR+C DCH  IK IS    REI +RD +RFHHFKDG 
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753

Query: 610 CSCRDYW 616
           CSC D+W
Sbjct: 754 CSCGDFW 760



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 185/407 (45%), Gaps = 84/407 (20%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +   + DP I++++++I    ++     ++ ++S+M   G+ PD+H  P L K  ++L+ 
Sbjct: 72  VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---------- 208
            ++G+Q H V+  +G +   FVQ S+ HMY   G + DA KVF+ MS++D          
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 209 -------------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
                                    +V+WN +++GF  +G   EA+ +F+++   G  PD
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
             T+ S+  +  +   L +GR  H YV K GL  +  V +A++D Y K G +     +F 
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 304 EMR-----------------------------------KRNAVSWSTLVVGLAVNGFGKE 328
           +                                     + N VSW++++ G A NG   E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE-----H 383
           ALELF+EM++ G  P  VT   +L AC +   +  G       +  +G   ++      H
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-------RSTHGFAVRVHLLDNVH 424

Query: 384 FG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            G  ++D+  + G +  + + + NM+   N V W +L+   ++HG +
Sbjct: 425 VGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCWNSLMNGFSMHGKA 470


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 327/522 (62%), Gaps = 2/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  +WN MI GY ++ N   A+++  +M + G+K D  T   +L   ++
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQ 107

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D+  G+  H   I++G E  +FV N+L++MYA FG +  A KVF L+  +D+V+WN++
Sbjct: 108 VGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTL 166

Query: 216 INGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I G+A NG  +EA+ ++  M   E + P+  T VS+  A + +GAL  G R H  V K  
Sbjct: 167 ITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC 226

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L  +V V   L+D Y KCG +  A  +F ++ ++N+V W+ ++    V+G G++ALELF+
Sbjct: 227 LYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFR 286

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM+     P  +TFV +L ACSH G+V +    F  M++EYGI P ++H+GCMVDL GRA
Sbjct: 287 EMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRA 346

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G ++ A+ +I+ M + P+A  W  LL AC IHG+  + + A   L +++ ++ G YVLLS
Sbjct: 347 GELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLS 406

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   +W  V +VR       ++K PG S + L N+V  F+ G+++HP+ EEI+  L 
Sbjct: 407 NIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELR 466

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++T K+K  GYVP    V  D+EE+EKE  L  HSE++AIA+ +++T+P TP+R+ KNLR
Sbjct: 467 DLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLR 526

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH   K IS +  REI+VRD SRFHHFK G CSC DYW
Sbjct: 527 VCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 9/311 (2%)

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           P ++KA   L D   G++ H + ++ GFE  VFV  SLVHMY+ FG V DA K+F+ M  
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD  +WN++I+G+  NG   EAL +  EM  EGV+ D  T+ S+   CA++G +  G+  
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H YV K GL   + V+NAL++ Y+K G +  AQ+VF  + K + VSW+TL+ G A NG  
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLA 176

Query: 327 KEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
            EA+E++  ME     +P + T+V +L A SH G + +G     ++     +   +    
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC-LYSDVFVGT 235

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA-EIARSTLLQ-LE 443
           C++D+ G+ G +  A       +   N+V W  ++    +HG    A E+ R    + ++
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQ-VPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVK 294

Query: 444 PKHSGDYVLLS 454
           P H     LLS
Sbjct: 295 PDHITFVSLLS 305


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/524 (41%), Positives = 322/524 (61%), Gaps = 14/524 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAI 153
           A  +F      ++FTW  M+ GY ++     A EL+ +M      P+ +  ++  +L   
Sbjct: 264 ARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM------PERNEVSWNAMLAGY 317

Query: 154 SKLADVRMGEQTHSV-AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   V M ++   V   RN     V   N+++  YA  G + +A  +F+ M +RD V+W
Sbjct: 318 VQGERVEMAKELFDVMPCRN-----VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW 372

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G++ +G   EAL LF  M  EG   +  +  S  S CA++ AL LG++ H  + K
Sbjct: 373 AAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 432

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V NALL  Y KCG I  A  +F+EM  ++ VSW+T++ G + +GFG+EAL  
Sbjct: 433 GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRF 492

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M+  G  P + T V VL ACSH G+VD+G  YF  M  +YG+ P  +H+ CMVDLLG
Sbjct: 493 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLG 552

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL+++A+  ++NM   P+A IW TLLGA  +HG++ +AE A   +  +EP++SG YVL
Sbjct: 553 RAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVL 612

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNLYA   RW +V ++R  M  + VKK PG+S +E+ N+   F +GD  HP+ +EI A 
Sbjct: 613 LSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAF 672

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++  ++K  GYV +T  V  D+EEEEKE  + YHSE++A+A+ ++  + G P+RV+KN
Sbjct: 673 LEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKN 732

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ++KV  R I++RD +RFHHFKDG CSC DYW
Sbjct: 733 LRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 2/234 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A N+F  +   +  +W  MI GY++S +   A+ L+  M   G + +  ++   L  
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALST 413

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + +  + +G+Q H   ++ G+E+  FV N+L+ MY   G +++A  +F+ M+ +D+V+W
Sbjct: 414 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 473

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           N++I G++ +G   EAL  F  M  EG++PD  TMV++ SAC+  G +  GR+  HT   
Sbjct: 474 NTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQ 533

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
             G+  N      ++D   + G++  A  + + M  + +A  W TL+    V+G
Sbjct: 534 DYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHG 587



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 133/360 (36%), Gaps = 109/360 (30%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ +WN MI+GY  + N   A EL+ +M                     
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMP-------------------- 148

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                              E  V   N+++  YA  G V DA +VF+ M E++ V+WN++
Sbjct: 149 -------------------ERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNAL 189

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++ +  N K  EA  LF          + + +VS                     W    
Sbjct: 190 LSAYVQNSKLEEACVLFGSR-------ENWALVS---------------------W---- 217

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  N LL  + K   I+ A++ F  M+ R+ VSW+T++ G A NG   EA +LF E
Sbjct: 218 -------NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE 270

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM------------------------ 371
             +        T+  ++       MV+E    F RM                        
Sbjct: 271 SPVHDV----FTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMA 326

Query: 372 KDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           K+ + +MP   +  +  M+    + G + +A      M    + V W  ++   +  GHS
Sbjct: 327 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHS 385



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 33/181 (18%)

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-----ASEGVEPDGYTMVS 249
           K   K      + D+  WN  I+ +   G+ +EAL +F+ M      S      GY    
Sbjct: 45  KSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNG 104

Query: 250 -------LFSACAELGALALGRRAHTYVWKVGLSD-----------NVNVNNALLDFYSK 291
                  LF    E   ++       YV    L             +V   N +L  Y++
Sbjct: 105 EFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQ 164

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME----------IGGF 341
            G +  A+RVF  M ++N VSW+ L+     N   +EA  LF   E          +GGF
Sbjct: 165 NGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGF 224

Query: 342 V 342
           V
Sbjct: 225 V 225


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 346/640 (54%), Gaps = 72/640 (11%)

Query: 47  TLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+++ CA  S+    KQ+H F++  G+ L++  L   L++  V     +  A N+F  + 
Sbjct: 79  TVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSS-LLHMYVQFDH-LKDARNVFDKLP 136

Query: 105 DP-----------------------------------NIFTWNTMIRGYAESANPLLAVE 129
            P                                   N+ +WN MI G+  S + L AV 
Sbjct: 137 QPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVL 196

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           ++  MH+ G+KPD  +   +L A+  L    MG Q H   I+ G     FV ++L+ MY 
Sbjct: 197 MFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYG 256

Query: 190 AFGHVKDACKVFELMSERDL---------------------------------VAWNSVI 216
                 +   VF  M E D+                                 V+W S+I
Sbjct: 257 KCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMI 316

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
              + NGK  EAL LFREM  EGV+P+  T+  L  AC  + AL  G+ AH +  + G+ 
Sbjct: 317 ASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIF 376

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           ++V V +AL+D Y+KCG ++A++  F  M  RN VSW++L+ G A++G   EA+ +F+ M
Sbjct: 377 NDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELM 436

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           +  G  P  V+F  VL AC+  G+ +EG+ YF  M   +G+  ++EH+ CMV LLGR+G 
Sbjct: 437 QRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGR 496

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++AY  I+ M   P++ +W  LL +C +H    + EIA   + +LEP++ G+Y+LLSN+
Sbjct: 497 LEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNI 556

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA +  W+ V  VR  M    +KK PG+S +E+ N+V     GD SHPQ  +I   LA++
Sbjct: 557 YASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKL 616

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
           T ++K  GYVP T+ V  D+EE++KE  L  HSEK+A+   L+NT PG P++V+KNLR+C
Sbjct: 617 TVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRIC 676

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH  IK IS    REI VRD +RFH FK G CSC DYW
Sbjct: 677 RDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 170/371 (45%), Gaps = 72/371 (19%)

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           + ++S M   GI PD+   P ++K  + L+ ++ G+Q H  A+ +G      V +SL+HM
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 188 YAAFGHVKDACKVFE-----------------------------------LMSERDLVAW 212
           Y  F H+KDA  VF+                                   L  E +LV+W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N +I+GF  +G   +A+ +F+ M  EG++PDG ++ S+  A  +L    +G + H YV K
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 273 VGLSDNVNVNNALLDFYSKC-------------------------------GIIIAAQRV 301
            GL  +  V +AL+D Y KC                               G++  A  V
Sbjct: 239 QGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEV 298

Query: 302 FREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           F++ +    N VSW++++   + NG   EALELF+EM+I G  P  VT   +L AC +  
Sbjct: 299 FKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIA 358

Query: 360 MVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            +  G  ++   +++  GI   +     ++D+  + G +  A     +M+   N V W +
Sbjct: 359 ALLHGKAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRM-LASRLCFDMMPNRNLVSWNS 415

Query: 419 LLGACTIHGHS 429
           L+    +HG +
Sbjct: 416 LMAGYAMHGKT 426


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/553 (38%), Positives = 339/553 (61%), Gaps = 35/553 (6%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLA 157
           +F  + DP+I +WN++I GY      + A+E +S M   S +KPD  T   +L A +   
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRE 292

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-----------------------AF--- 191
            +++G+Q H+  +R   +    V N+L+ MYA                       AF   
Sbjct: 293 SLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSL 352

Query: 192 -------GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                  G +  A  +F+ +  RD+VAW ++I G+A NG  ++AL LFR M  EG +P+ 
Sbjct: 353 LDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNN 412

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           YT+ ++ S  + L +L  G++ H    ++    +V+V NAL+  YS+ G I  A+++F  
Sbjct: 413 YTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNH 472

Query: 305 M-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           +   R+ ++W+++++ LA +G G EA+ELF++M      P  +T+VGVL AC+H G+V++
Sbjct: 473 ICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQ 532

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           G SYF  MK+ + I P   H+ CM+DLLGRAGL+++AY +I+NM + P+ V W +LL +C
Sbjct: 533 GKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSC 592

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
            +H +  +A++A   LL ++P +SG Y+ L+N  +   +W +  +VR++M  + VKK  G
Sbjct: 593 RVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQG 652

Query: 484 HSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKED 543
            S V++ N+V  F + D  HPQ + I+ M+++I K++K  G++P T +V  D+E+E KE 
Sbjct: 653 FSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQ 712

Query: 544 ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFH 603
            L +HSEK+AIAF L+NT   T VR++KNLRVC DCH AI+ IS +  REI+VRD +RFH
Sbjct: 713 ILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFH 772

Query: 604 HFKDGHCSCRDYW 616
           HFKDG CSC+DYW
Sbjct: 773 HFKDGSCSCQDYW 785



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 183/427 (42%), Gaps = 80/427 (18%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +  P+  +W TMI GY        AV  + +M  SGI P   T+  +L +
Sbjct: 95  LDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLAS 154

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG------------HVKD---- 196
            +    + +G++ HS  ++ G   +V V NSL++MYA  G             +KD    
Sbjct: 155 CAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTW 214

Query: 197 ---------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGV 240
                          A  +F+ M++ D+V+WNS+I G+   G    AL  F  M  S  +
Sbjct: 215 NTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL 274

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD +T+ S+ SACA   +L LG++ H ++ +  +     V NAL+  Y+K G +  A R
Sbjct: 275 KPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHR 334

Query: 301 ---------------------------------VFREMRKRNAVSWSTLVVGLAVNGFGK 327
                                            +F  ++ R+ V+W+ ++VG A NG   
Sbjct: 335 IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLIS 394

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--- 384
           +AL LF+ M   G  P   T   VL   S    +D G       K  + +  ++E     
Sbjct: 395 DALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG-------KQLHAVAIRLEEVSSV 447

Query: 385 ---GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTL 439
                ++ +  R+G +K A +   ++    + + W +++ +   H  G+ AI    +   
Sbjct: 448 SVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR 507

Query: 440 LQLEPKH 446
           + L+P H
Sbjct: 508 INLKPDH 514



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 168/395 (42%), Gaps = 73/395 (18%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           LL++  K  D  +G   H+  I++G   L VF+ N+L+++Y   G   DA ++F+ M  +
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 208 DLVAWNSVINGFASNGKPNEALTLFRE-------------------------------MA 236
              +WN++++  A  G  + A  +F E                               M 
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           S G+ P  +T  ++ ++CA   AL +G++ H++V K+G S  V V N+LL+ Y+KCG  +
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 297 AAQRVFREMRKRNA-------------------------------VSWSTLVVGLAVNGF 325
            A+ VF  MR ++                                VSW++++ G    G+
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 326 GKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEH 383
              ALE F  M +     P + T   VL AC++   +  G      + + +  I   + +
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
              ++ +  ++G V+ A+  ++    P   VI  T L    + G+  I +I  +  +   
Sbjct: 318 --ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSL----LDGYFKIGDIDPARAIFDS 371

Query: 444 PKHSGDYVLLSNLYAYEQRWL--NVQEVRRTMVKE 476
            KH       + +  Y Q  L  +   + R M++E
Sbjct: 372 LKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE 406


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 344/559 (61%), Gaps = 35/559 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           M  A ++F ++++ +I +WN +I GY ++    +A++ +S+M   S ++PD  T   +L 
Sbjct: 245 MDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLS 304

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV----------------- 194
           A + L  ++MG+Q HS  +R G      + N+L+  YA  G V                 
Sbjct: 305 ACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNV 364

Query: 195 ----------------KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                           K A +VF++M+ RD++AW ++I G+  NG+ +EA+ LFR M   
Sbjct: 365 ISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRS 424

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G EP+ +T+ ++ SACA L  L  G++ H    +     +V+V+NA++  Y++ G +  A
Sbjct: 425 GPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLA 484

Query: 299 QRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +RVF ++  ++  V+W++++V LA +G G++A+ LF+EM   G  P  VT++GV  AC+H
Sbjct: 485 RRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTH 544

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G +D+G  Y+++M +E+GI+P++ H+ CMVDLL RAGL+ +A+E+IQ M + P+ V+W 
Sbjct: 545 AGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWG 604

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL AC +  ++ +AE+A   LL ++P +SG Y  L+N+Y+   RW +   + +    + 
Sbjct: 605 SLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKA 664

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK  G S   + ++V  F   D  HPQ + I    AE+ +++K  G+VP   +V  D++
Sbjct: 665 VKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVD 724

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           +E KE+ LS HSEK+AIAF L++T   T +R++KNLRVC DCH AIK ISKV  REI+VR
Sbjct: 725 DELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVR 784

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFHHF+DG+CSC+DYW
Sbjct: 785 DATRFHHFRDGYCSCKDYW 803



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 169/404 (41%), Gaps = 74/404 (18%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F+ + + +  +W  M+ G   +     AV+ +  M   G+ P       +L +
Sbjct: 113 LADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSS 172

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS------- 205
            +      +G + HS  I+ G  S V V NS+++MY   G  + A  VFE M        
Sbjct: 173 CAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSW 232

Query: 206 ------------------------ERDLVAWNSVINGFASNGKPNEALTLF-REMASEGV 240
                                   ER +V+WN++I G+  NG  + AL  F R + +  +
Sbjct: 233 NAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSM 292

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           EPD +T+ S+ SACA L  L +G++ H+Y+ + G+  +  + NAL+  Y+K G +  A+R
Sbjct: 293 EPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARR 352

Query: 301 ---------------------------------VFREMRKRNAVSWSTLVVGLAVNGFGK 327
                                            VF  M  R+ ++W+ ++VG   NG   
Sbjct: 353 IMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQND 412

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY----FKRMKDEYGIMPKIEH 383
           EA+ELF+ M   G  P   T   VL AC+    +  G        + ++++      +  
Sbjct: 413 EAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQ-----SVSV 467

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
              ++ +  R+G V  A      +      V W +++ A   HG
Sbjct: 468 SNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 14/266 (5%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F  NSL+ MYA  G + DA  VF  M ERD V+W  ++ G    G+  +A+  F +M  E
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+ P  + + ++ S+CA   A  +GR+ H++V K+GLS  V V N++L  Y KCG    A
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M+ R+  SW+ +V      G    AL +F+ ME    V       G     +  
Sbjct: 218 RAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGY----NQN 273

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV-----KQAYEYIQNMLMPPNA 413
           G+ D    +F RM     + P  + F     L   A L      KQ + YI    MP ++
Sbjct: 274 GLDDMALKFFSRMLTASSMEP--DEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSS 331

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTL 439
            I   L+   + +  S   E AR  +
Sbjct: 332 QIMNALI---STYAKSGSVETARRIM 354



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 173/386 (44%), Gaps = 42/386 (10%)

Query: 24  KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLG---- 79
           + L  S+    E  +TSV+  C  L  +        KQ+H++ +R G+P ++  +     
Sbjct: 285 RMLTASSMEPDEFTVTSVLSACANLRMLKMG-----KQMHSYILRTGMPYSSQIMNALIS 339

Query: 80  ----------------KYLIYAIVSLSFP-----------MSYAHNIFSHVQDPNIFTWN 112
                           K ++  +  +SF               A  +F  + + ++  W 
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWT 399

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            MI GY ++     A+EL+  M  SG +P++HT   +L A + LA +  G+Q H  AIR+
Sbjct: 400 AMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRS 459

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFASNGKPNEALTL 231
             E  V V N+++ +YA  G V  A +VF+ +  R + V W S+I   A +G   +A+ L
Sbjct: 460 LQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVL 519

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYS 290
           F EM   GV+PD  T + +FSAC   G +  G+R +  +    G+   ++    ++D  +
Sbjct: 520 FEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLA 579

Query: 291 KCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEA-LELFKEMEIGGFVPGEVTF 348
           + G++  A    + M    + V W +L+    V      A L   K + I     G  + 
Sbjct: 580 RAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSA 639

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDE 374
           +  +Y  S CG  ++    +K  KD+
Sbjct: 640 LANVY--SACGRWNDAARIWKLRKDK 663



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 73/237 (30%)

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI---------------------------- 294
           GR  H +  K GL  +  + N LL +Y++ G+                            
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 295 ---------IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
                    +  A+ VF +M +R+AVSW+ +VVGL   G   +A++ F +M   G  P +
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
                VL +C+                +  GI  K+  F   V  LG +  V  A     
Sbjct: 164 FMLTNVLSSCA--------------ATEARGIGRKVHSF---VIKLGLSSCVPVA----- 201

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
                 N+V++        ++G    AE AR+   +++ +    +  + +LY ++ R
Sbjct: 202 ------NSVLY--------MYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGR 244


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 317/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  + TWN MI G  +       + L+ +MH  G  PD +T   +    + 
Sbjct: 44  ARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 103

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  V +G+Q H  AI+ G E  + V +SL HMY   G ++D   V   M  R+LVAWN++
Sbjct: 104 LRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 163

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P   L L++ M   G  P+  T V++ S+C++L     G++ H    K+G 
Sbjct: 164 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 223

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V V ++L+  YSKCG +  A + F E    + V WS+++     +G G EA++LF  
Sbjct: 224 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNS 283

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           M E       EV F+ +LYACSH G+ D+G   F  M ++YG  P ++H+ C+VDLLGRA
Sbjct: 284 MAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRA 343

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + QA   I++M + P+ VIW+TLL AC IH ++ +A+     +L+++P  S  YVLL+
Sbjct: 344 GCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLA 403

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N++A  +RW +V EVR++M  + VKK  G S  E    V +F MGDRS  +++EI++ L 
Sbjct: 404 NVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLK 463

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T ++KL+GY P T +V  D++EEEKE  L  HSEK+A+AF L+    G P+R++KNLR
Sbjct: 464 ELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 523

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH+A K IS + +REI +RD SRFHHF +G CSC DYW
Sbjct: 524 VCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 3/300 (1%)

Query: 160 RMGEQTHSVAIRNGFESLVFVQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           ++G+   +VA+        F+  N L++ Y   G +  A KVF+ M +R L  WN++I G
Sbjct: 6   KLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAG 65

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
                   E L+LFREM   G  PD YT+ S+FS  A L ++++G++ H Y  K GL  +
Sbjct: 66  LIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELD 125

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + VN++L   Y + G +   + V R M  RN V+W+TL++G A NG  +  L L+K M+I
Sbjct: 126 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI 185

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P ++TFV VL +CS   +  +G         + G    +     ++ +  + G + 
Sbjct: 186 SGCRPNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLG 244

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            A +         + V+W +++ A   HG    A    +++ +       +   L+ LYA
Sbjct: 245 DAAKAFSER-EDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYA 303


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/548 (39%), Positives = 341/548 (62%), Gaps = 7/548 (1%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           +P L   LI     L   + +A  +F   ++  IF WN + R  A ++     + LY +M
Sbjct: 108 DPYLATKLINMYCDLG-SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQM 166

Query: 135 HVSGIKPDTHTYPFLLKA--ISKLA--DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +  GI  +  TY ++LKA  +S+L+   +R G++ H+  +R+G+E  V V  +L+ +YA 
Sbjct: 167 NWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYAR 226

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTMV 248
           FG+V  A  VF  M ++++V+W+++I  +A N  P +AL LF+ M  E  +  P+  TMV
Sbjct: 227 FGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMV 286

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S+  ACA L AL  G+  H YV + GL   + V N L+  Y +CG I   QRVF  M+KR
Sbjct: 287 SVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR 346

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + +SW++L+    ++G GK+A+++F+ M   G  P  +TF+ VL ACSH G+V+E    F
Sbjct: 347 DVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILF 406

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M ++Y I P++EH+ CMVD+LGRA  + +A E IQNM   P   +W +LLG+C IH +
Sbjct: 407 ESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCN 466

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             +AE A + L +LEPK++G+YVLLS++YA  + W +V+ VR+ +    ++K P  S +E
Sbjct: 467 VELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIE 526

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           +  +++     +  +PQ EE+ A L  +  ++K +GYVP+T  V  D++EEEKE  +  H
Sbjct: 527 VKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGH 586

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           S K+A+AF L+NT+ G  +R+  NLR+C DCH  +K +SK  +REI++RD +RFH FKDG
Sbjct: 587 SGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDG 646

Query: 609 HCSCRDYW 616
            CSC DYW
Sbjct: 647 VCSCGDYW 654



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 52/340 (15%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P   T+  L+ +  +   +  G   H   + +G +   ++   L++MY   G V  ACKV
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELG 258
           F+   E+ +  WN++    A   +  + L L+ +M   G+  + +T   +  AC  +EL 
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 259 ALAL--GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
              L  G+  H ++ + G   +V+V   LLD Y++ G +  A  VF  M  +N VSWS +
Sbjct: 192 ICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAM 251

Query: 317 VVGLAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACS------------------ 356
           +   A N    +ALELF+ M  E    VP  +T V VL AC+                  
Sbjct: 252 IACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR 311

Query: 357 -----------------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
                             CG +  G   F  MK        +  +  ++ + G  GL K+
Sbjct: 312 GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR-----DVISWNSLISIYGMHGLGKK 366

Query: 400 AYEYIQNML---MPPNAVIWRTLLGACTIHGHSAIAEIAR 436
           A +  +NM+   + P+ + + T+L AC+   H+ + E A+
Sbjct: 367 AIQIFENMINRGVSPSYITFITVLCACS---HAGLVEEAK 403



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 15/227 (6%)

Query: 39  TSVVRKCI-TLLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPM 93
           T V++ C+ + L +C   K K  ++HA  +RHG    V +    L  Y  +  V      
Sbjct: 179 TYVLKACVVSELSICPLRKGK--EIHAHILRHGYEGHVHVMTTLLDVYARFGYV------ 230

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK--PDTHTYPFLLK 151
           SYA ++F  + D NI +W+ MI  YA++  P+ A+EL+  M +      P+  T   +L+
Sbjct: 231 SYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQ 290

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A + LA +  G+  H+  +R G +S + V N+L+ MY   G +    +VF+ M +RD+++
Sbjct: 291 ACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVIS 350

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
           WNS+I+ +  +G   +A+ +F  M + GV P   T +++  AC+  G
Sbjct: 351 WNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAG 397


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 348/573 (60%), Gaps = 12/573 (2%)

Query: 47  TLLQVCASSKHKLKQV--HAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFS 101
           ++L VCA S   +  V  H   ++HG+     D   ++  A++++      +  A  +F 
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGL-----DSDVFVSNALINMYSKFGRLQDAQMVFD 281

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            ++  ++ +WN++I  Y ++ +P  A+  +  M + GI+PD  T   L    S+L+D R+
Sbjct: 282 QMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRI 341

Query: 162 GEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                   IR  + +  V + N+LV+MYA  G++  A  VF+ +  +D ++WN+++ G+ 
Sbjct: 342 SRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYT 401

Query: 221 SNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            NG  +EA+  +  M       P+  T VS+  A + +GAL  G + H  + K  L  +V
Sbjct: 402 QNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V   L+D Y KCG +  A  +F E+ +  +V W+ ++  L ++G G+EAL+LFK+M   
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE 521

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
                 +TFV +L ACSH G+VDEG   F  M+ EYGI P ++H+GCMVDLLGRAG +++
Sbjct: 522 RVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEK 581

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AYE ++NM + P+A IW  LL AC I+G++ +  +A   LL+++ ++ G YVLLSN+YA 
Sbjct: 582 AYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYAN 641

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            ++W  V +VR       ++KTPG S V +G++   F+ G+++HP+  EI+  L  ++ K
Sbjct: 642 TEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAK 701

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GYVP    V+ DIEE+EKE  L+ HSE++AIAF +++T P +P+R+ KNLRVC DC
Sbjct: 702 MKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDC 761

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           H A K IS++  REIVVRD +RFHHFKDG CSC
Sbjct: 762 HNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 184/341 (53%), Gaps = 12/341 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  AH +F  +   ++ +WN MI G+ ++ N   A+ + ++M   G+K DT T   +L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++  DV  G   H   +++G +S VFV N+L++MY+ FG ++DA  VF+ M  RDLV+W
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I  +  N  P+ AL  F+ M   G+ PD  T+VSL S  ++L    + R    +V +
Sbjct: 292 NSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIR 351

Query: 273 VG-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
              L  +V + NAL++ Y+K G +  A  VF ++ +++ +SW+TLV G   NG   EA++
Sbjct: 352 REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAID 411

Query: 332 LFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            +  M E    +P + T+V ++ A SH G + +G     ++     +   +    C++DL
Sbjct: 412 AYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDL 470

Query: 391 LGRAGLVKQA----YEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G+ G ++ A    YE  ++  +P     W  ++ +  IHG
Sbjct: 471 YGKCGRLEDAMSLFYEIPRDTSVP-----WNAIIASLGIHG 506



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 17/300 (5%)

Query: 60  KQVHA----FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           K++HA    F     + L+   +  Y+ +  +SLS       + F ++   NIF+WN++I
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLS------RSTFDYIHKKNIFSWNSII 92

Query: 116 RGYAESANPLLAV----ELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
             Y        A+    +L+S      ++PD +T+P +LKA   L D   G++ H    +
Sbjct: 93  SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFK 149

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFE  VFV  SLVH+Y+ +G +  A KVF  M  +D+ +WN++I+GF  NG    AL +
Sbjct: 150 MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
              M  EGV+ D  T+ S+   CA+   +  G   H +V K GL  +V V+NAL++ YSK
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            G +  AQ VF +M  R+ VSW++++     N     AL  FK M++GG  P  +T V +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           +V   ++ H++ +  G    + +   L+++Y   G +  +   F+ + ++++ +WNS+I+
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 218 GFASNGKPNEALT----LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
            +   GK +EA+     LF       + PD YT   +  AC    +L  G++ H  V+K+
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKM 150

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G  D+V V  +L+  YS+ G++  A +VF +M  ++  SW+ ++ G   NG    AL + 
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
             M+  G     +T   +L  C+    V  G
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVING 241


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/633 (36%), Positives = 354/633 (55%), Gaps = 48/633 (7%)

Query: 25  SLYHSTPASQENPIT----SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
           SLY  T   +  P T    SV+  C  LL          K +H   +  G   ++  +G 
Sbjct: 101 SLYSETQRIRLQPDTYTFPSVINACAGLLDF-----EMAKSIHDRVLDMGFG-SDLYIGN 154

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM------ 134
            LI      +  +  A  +F  +   ++ +WN++I GY  +     A+E+Y +       
Sbjct: 155 ALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFME 213

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
            V+  KPD  T   +L+A   L D+  G+  H   I +G+E      N L++MYA  G++
Sbjct: 214 MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 273

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA------------------ 236
             + +VF  M  +D V+WNS+IN +  NGK  ++L +F  M                   
Sbjct: 274 LASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSE 333

Query: 237 -------------SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
                        +EGV PD  TM+S+   C+ L A   G+  H  ++K+GL  +V V N
Sbjct: 334 DCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGN 393

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            L++ YSKCG +  + +VF+ M+ ++ V+W+ L+    + G GK+A+  F EME  G VP
Sbjct: 394 VLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVP 453

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             V FV +++ACSH G+V+EG +YF RMK +Y I P+IEH+ C+VDLL R+ L+ +A ++
Sbjct: 454 DHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDF 513

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I +M + P++ IW  LL AC + G + IAE     +++L P  +G YVL+SN+YA   +W
Sbjct: 514 ILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKW 573

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V+ +R+++    +KK PG S +E+ N+V+ F  G +   Q EE++ +L  +   +  E
Sbjct: 574 DQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKE 633

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GY+   + V  DI+E+EK D L  HSE++AIAF L+NT PGTP++V+KNLRVC DCH   
Sbjct: 634 GYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVT 693

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K ISK+  RE++VRD +RFH FKDG CSC DYW
Sbjct: 694 KYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 192/389 (49%), Gaps = 63/389 (16%)

Query: 100 FSHVQDP--------------NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145
           ++H +DP              N++ WN++IR    +     A+ LYS+     ++PDT+T
Sbjct: 58  YAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +P ++ A + L D  M +  H   +  GF S +++ N+L+ MY  F  +  A KVFE M 
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 206 ERDLVAWNSVINGFASNGKPNEAL-------TLFREMASEGVEPDGYTMVSLFSACAELG 258
            RD+V+WNS+I+G+ +NG  NEAL        LF EM ++  +PD  T+ S+  AC  LG
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLG 236

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
            L  G+  H Y+   G   +   +N L++ Y+KCG ++A+Q VF  M+ +++VSW++++ 
Sbjct: 237 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 296

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
               NG   ++L++F+ M+        +T+  ++ +C H    + G     RM+ E G+ 
Sbjct: 297 VYIQNGKMGDSLKVFENMKARDI----ITWNTIIASCVHSEDCNLGLRMISRMRTE-GVT 351

Query: 379 PKI--------------------EHFGC---------------MVDLLGRAGLVKQAYEY 403
           P +                    E  GC               ++++  + G ++ +++ 
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 411

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            + ++   + V W  L+ AC ++G    A
Sbjct: 412 FK-LMKTKDVVTWTALISACGMYGEGKKA 439


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/542 (40%), Positives = 315/542 (58%), Gaps = 15/542 (2%)

Query: 90  SFPMSYAHNIFSHVQDPN-------------IFTWNTMIRGYAESANPLLAVELYSKMHV 136
           SF  ++  N++S +  PN             + TW  +I G  ++     A+  +S M  
Sbjct: 42  SFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRR 101

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
             I+P+  T+P   KA   L    +G+Q H++A++ G  S VFV  S   MY+  G  ++
Sbjct: 102 DSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEE 161

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A K+F+ M ER++  WN+ ++     G+ ++ALT F E   EG+EP  + + S+ SACA 
Sbjct: 162 ARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAG 221

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           L  L +G+  HT   K  +  N+ V +AL+D Y KCG I  A+R F EM +RN V+W+ +
Sbjct: 222 LSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAM 281

Query: 317 VVGLAVNGFGKEALELFKEMEIGG--FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           + G A  G    A+ LF EM  G     P  VTFV VL ACS  G V+ G   F+ M+  
Sbjct: 282 IGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGR 341

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YGI P  EH+ C+VDLLGRAG+V+QAY++I+ M + P   +W  LLGA  + G S + ++
Sbjct: 342 YGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKV 401

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   L +L+P  SG++VLLSN++A   RW     VR+ M    +KK  G S +  GN V 
Sbjct: 402 AADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVH 461

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
            F   D SH +  EI AMLA++  +++  GY+P T     D+EEEEK   + YHSEKIA+
Sbjct: 462 VFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIAL 521

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           AF L++   G P+R+ KNLR+C DCH AIK IS +  REI+VRD + FH F+D  CSCRD
Sbjct: 522 AFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRD 581

Query: 615 YW 616
           YW
Sbjct: 582 YW 583


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 341/580 (58%), Gaps = 13/580 (2%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYA 96
            S+++ CI L  +        +Q+H+  I+    LN      Y+   ++ +   +     A
Sbjct: 478  SILKTCIRLGDLELG-----EQIHSQIIKTSFQLN-----AYVCSVLIDMYAKLGKLDTA 527

Query: 97   HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +I       ++ +W TMI GY +      A+  + +M   GI+ D       + A + L
Sbjct: 528  WDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 587

Query: 157  ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
              ++ G+Q H+ A  +GF S +  QN+LV +Y+  G++++A   FE     D +AWN+++
Sbjct: 588  QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALV 647

Query: 217  NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            +GF  +G   EAL +F  M  EG++ + +T  S   A +E   +  G++ H  + K G  
Sbjct: 648  SGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 707

Query: 277  DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
                V NA++  Y+KCG I  A++ F E+  +N VSW+ ++   + +GFG EAL+ F +M
Sbjct: 708  SETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 337  EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                  P  VT VGVL ACSH G+VD+G  YF+ M  EYG+ PK EH+ C+VD+L RAGL
Sbjct: 768  IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGL 827

Query: 397  VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            + +A ++I  M + P+A++WRTLL AC +H +  I E A   LL+LEP+ S  YVLLSNL
Sbjct: 828  LSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 887

Query: 457  YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
            YA  ++W      R+ M ++ VKK PG S +E+ N +  F++GD++HP  +EIH    ++
Sbjct: 888  YAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDL 947

Query: 517  TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
            TK+    GYV    ++ +++++E+K+  +  HSEK+AI+F L++     P+ V+KNLRVC
Sbjct: 948  TKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVC 1007

Query: 577  ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             DCH  IK +SKV +REI+VRD  RFHHF+ G CSC+DYW
Sbjct: 1008 NDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 178/374 (47%), Gaps = 6/374 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+HA++ + G   N+   G  L +YA  S    +  A N F   +  N+  WN M+  Y
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCS---DIETALNYFLETEVENVVLWNVMLVAY 448

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
               +   +  ++ +M +  I P+ +TYP +LK   +L D+ +GEQ HS  I+  F+   
Sbjct: 449 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V + L+ MYA  G +  A  +    + +D+V+W ++I G+      ++ALT FR+M   
Sbjct: 509 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+  D   + +  SACA L AL  G++ H      G S ++   NAL+  YSKCG I  A
Sbjct: 569 GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              F +    + ++W+ LV G   +G  +EAL +F  M   G      TF   + A S  
Sbjct: 629 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASET 688

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
             + +G      +  + G   + E    ++ +  + G +  A +    + M  N V W  
Sbjct: 689 ANMKQG-KQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSM-KNEVSWNA 746

Query: 419 LLGACTIHGHSAIA 432
           ++ A + HG  + A
Sbjct: 747 MINAYSKHGFGSEA 760



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 187/374 (50%), Gaps = 20/374 (5%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYA-----IVSLSFPMSYAHNIFSHVQDPNIFTWNT 113
           ++Q+HA  I  G       LGK  I       + S +  +  A  +F  +   +  +W  
Sbjct: 189 VEQIHARIIYQG-------LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           MI G +++   + A+ L+  M+V GI P  + +  +L A  K+  + +GEQ H + ++ G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F S  +V N+LV +Y   G +  A  +F  MS+RD V +N++ING +  G   +A+ LF+
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M  +G+EPD  T+ SL  AC+  G L  G++ H Y  K+G + N  +  ALL+ Y+KC 
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCS 421

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            I  A   F E    N V W+ ++V   +    + +  +F++M+I   VP + T+  +L 
Sbjct: 422 DIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 354 ACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMP 410
            C   G ++ G     + +K  +    ++  + C  ++D+  + G +  A++ I      
Sbjct: 482 TCIRLGDLELGEQIHSQIIKTSF----QLNAYVCSVLIDMYAKLGKLDTAWD-ILIRFAG 536

Query: 411 PNAVIWRTLLGACT 424
            + V W T++   T
Sbjct: 537 KDVVSWTTMIAGYT 550



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 202/406 (49%), Gaps = 26/406 (6%)

Query: 34  QENPITSVVRKCIT--------LLQVCASSKHKL---KQVHAFSIRHGVPLNNPDLGKYL 82
           QEN I SV    I         LL+ C  +   L   +++H+  ++ G   NN  L + L
Sbjct: 51  QENGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFD-NNACLSEKL 109

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +   +     +  A  +F  + +  IFTWN MI+  A  +       L+ +M    + P+
Sbjct: 110 LDFYL-FKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPN 168

Query: 143 THTYPFLLKAI---SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
             T+  +L+A    S   DV   EQ H+  I  G      V N L+ +Y+  G V  A +
Sbjct: 169 EGTFSGVLEACRGGSVAFDVV--EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARR 226

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           VF+ +  +D  +W ++I+G + N    EA+ LF +M   G+ P  Y   S+ SAC ++ +
Sbjct: 227 VFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 286

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L +G + H  V K+G S +  V NAL+  Y   G +I+A+ +F  M +R+AV+++TL+ G
Sbjct: 287 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLING 346

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYG 376
           L+  G+G++A+ELFK M++ G  P   T   ++ ACS  G +  G    +Y  ++   + 
Sbjct: 347 LSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLG--FA 404

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
              KIE  G +++L  +   ++ A  Y     +  N V+W  +L A
Sbjct: 405 SNDKIE--GALLNLYAKCSDIETALNYFLETEV-ENVVLWNVMLVA 447



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 172/373 (46%), Gaps = 10/373 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIR 116
           +Q+H   ++ G   +      Y+  A+VSL F +     A +IFS++   +  T+NT+I 
Sbjct: 291 EQLHGLVLKLGFSSDT-----YVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLIN 345

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G ++      A+EL+ +M + G++PD++T   L+ A S    +  G+Q H+   + GF S
Sbjct: 346 GLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFAS 405

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              ++ +L+++YA    ++ A   F      ++V WN ++  +        +  +FR+M 
Sbjct: 406 NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 465

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E + P+ YT  S+   C  LG L LG + H+ + K     N  V + L+D Y+K G + 
Sbjct: 466 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLD 525

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A  +      ++ VSW+T++ G     F  +AL  F++M   G    EV     + AC+
Sbjct: 526 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 585

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
               + EG           G    +     +V L  + G +++AY   +      N + W
Sbjct: 586 GLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN-IAW 643

Query: 417 RTLLGACTIHGHS 429
             L+      G++
Sbjct: 644 NALVSGFQQSGNN 656



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 149/318 (46%), Gaps = 20/318 (6%)

Query: 138 GIKPDTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           GI+P+  T  +LL+   K    +  G + HS  ++ GF++   +   L+  Y   G +  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A KVF+ M ER +  WN +I   AS     +   LF  M +E V P+  T   +  AC  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 257 LGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
            G++A     + H  +   GL  +  V N L+D YS+ G +  A+RVF  +  ++  SW 
Sbjct: 182 -GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GL+ N    EA+ LF +M + G +P    F  VL AC     ++ G       +  
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-------EQL 293

Query: 375 YGIMPKI----EHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI--H 426
           +G++ K+    + + C  +V L    G +  A E+I + +   +AV + TL+   +   +
Sbjct: 294 HGLVLKLGFSSDTYVCNALVSLYFHLGSLISA-EHIFSNMSQRDAVTYNTLINGLSQCGY 352

Query: 427 GHSAIAEIARSTLLQLEP 444
           G  A+    R  L  LEP
Sbjct: 353 GEKAMELFKRMQLDGLEP 370


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 338/559 (60%), Gaps = 35/559 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           M  A   F  + + +I TWN+MI G+ +    L A++++SKM   S + PD  T   +L 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLS 287

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK------------ 199
           A + L  + +G+Q HS  +  GF+    V N+L+ MY+  G V+ A +            
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 200 ---------------------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                                +F  + +RD+VAW ++I G+  +G   EA+ LFR M   
Sbjct: 348 EGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGG 407

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G  P+ YT+ ++ S  + L +L+ G++ H    K G   +V+V+NAL+  Y+K G I +A
Sbjct: 408 GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467

Query: 299 QRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            R F  +R +R+ VSW+++++ LA +G  +EALELF+ M + G  P  +T+VGV  AC+H
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V++G  YF  MKD   I+P + H+ CMVDL GRAGL+++A E+I+ M + P+ V W 
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL AC +H +  + ++A   LL LEP++SG Y  L+NLY+   +W    ++R++M   R
Sbjct: 588 SLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK  G S +E+ ++V  F + D +HP+  EI+  + +I  ++K  GYVP T +V  D+E
Sbjct: 648 VKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLE 707

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE KE  L +HSEK+AIAF L++T   T +R++KNLRVC DCH AIK ISK+  REI+VR
Sbjct: 708 EEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVR 767

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFHHFKDG CSCRDYW
Sbjct: 768 DTTRFHHFKDGFCSCRDYW 786



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 177/414 (42%), Gaps = 68/414 (16%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   +  +W TMI GY        A+ +   M   GI+P   T   +L +++    +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH------------VKD----------- 196
             G++ HS  ++ G    V V NSL++MYA  G             V+D           
Sbjct: 163 ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222

Query: 197 --------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTM 247
                   A   FE M+ERD+V WNS+I+GF   G    AL +F +M  +  + PD +T+
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTL 282

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR------- 300
            S+ SACA L  L +G++ H+++   G   +  V NAL+  YS+CG +  A+R       
Sbjct: 283 ASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGT 342

Query: 301 --------------------------VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                                     +F  ++ R+ V+W+ ++VG   +G   EA+ LF+
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR 402

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M  GG  P   T   +L   S    +  G         + G +  +     ++ +  +A
Sbjct: 403 SMVGGGQRPNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYAKA 461

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA-EIARSTLLQ-LEPKH 446
           G +  A      +    + V W +++ A   HGH+  A E+  + L++ L P H
Sbjct: 462 GNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 111/211 (52%), Gaps = 32/211 (15%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F  N+++  Y+  G +   C+ F+ + +RD V+W ++I G+ + G+ ++A+ +  +M  E
Sbjct: 81  FSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKE 140

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+EP  +T+ ++ ++ A    +  G++ H+++ K+GL  NV+V+N+LL+ Y+KCG  + A
Sbjct: 141 GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 299 QRV-------------------------------FREMRKRNAVSWSTLVVGLAVNGFGK 327
           + V                               F +M +R+ V+W++++ G    G+  
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 260

Query: 328 EALELFKEMEIGGFV-PGEVTFVGVLYACSH 357
            AL++F +M     + P   T   VL AC++
Sbjct: 261 RALDIFSKMLRDSLLSPDRFTLASVLSACAN 291



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K GL  +V + N L++ YSK G  + A+++F EM  R A SW+T++   +  G  
Sbjct: 37  HCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDM 96

Query: 327 KEALELFKEM 336
               E F ++
Sbjct: 97  DSTCEFFDQL 106



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%)

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N +L  YSK G + +    F ++ +R++VSW+T++VG    G   +A+ +  +M   G  
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 343 PGEVTFVGVLYACSHCGMVDEG 364
           P + T   VL + +    ++ G
Sbjct: 144 PTQFTLTNVLASVAATRCMETG 165


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/521 (40%), Positives = 315/521 (60%), Gaps = 3/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN++I G++   +  L      K  +S +KP+  T   ++ A S 
Sbjct: 93  ALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMS-VKPNEVTILSMISACSG 151

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D   G+  H   I+ G    V V NSL++MY   G +  AC++FE + + + V+WNS+
Sbjct: 152 ALDA--GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I    +NG   E +  F +M   G+E D  T+++L  AC  LG   L    H  ++  G 
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + +  ALLD Y+K G + A+  VF E+   + V+W+ ++ G A +G G+EA++LF+ 
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF  +L ACSH G+V+EG SYF  M + YGI P+++H+ CMVDLLGR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  AYE IQNM M PNA +W  LLGAC +HG+  + +     L+ +EP    +Y++LSN
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSN 449

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+  + W +  +VR  + +  +K+TPG+S +E GN+   FF+GDRSHP+TE+I++ L E
Sbjct: 450 MYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEE 509

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K++  GY  +TE V  D+EEE KED ++ HSEK+AIAF L+ +  G  + + KNLR+
Sbjct: 510 LLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRI 569

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   KLIS +  R I++RD  RFHHF DG CSC DYW
Sbjct: 570 CGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 7/297 (2%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++++  C+ +    K +H F I+ G  L    +   LI  +   S  ++ A  +F  + D
Sbjct: 143 LSMISACSGALDAGKYIHGFGIKVGGTLE-VKVANSLI-NMYGKSGDLTSACRLFEAIPD 200

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN  +WN++I     +      ++ ++KM   GI+ D  T   LL+A   L   ++ E  
Sbjct: 201 PNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESI 260

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H +    GF + + +  +L+  YA  G +  +  VF  +   D VAW +++ G+A++G  
Sbjct: 261 HGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLG 320

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNA 284
            EA+ LF  MA++G+EPD  T   L SAC+  G +  G+     + +V G+   V+  + 
Sbjct: 321 REAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSC 380

Query: 285 LLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
           ++D   +CG++  A  V + M  + NA  W  L+    V+G    GKE  E    ME
Sbjct: 381 MVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 345/581 (59%), Gaps = 28/581 (4%)

Query: 40  SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYA 96
           S+++ C TL      +    +Q+H   ++ G   N      Y+   ++ +      + +A
Sbjct: 443 SILKTCTTL-----GATDLGEQIHTQVLKTGFQFN-----VYVSSVLIDMYAKHGKLDHA 492

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             IF  +++ ++ +W  MI GY +      A+ L+ +M   GIK D   +   + A + +
Sbjct: 493 LKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGI 552

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
             +  G Q H+ +  +G+   + + N+LV +YA  G V++A   F+ +  +D V+WNS++
Sbjct: 553 QALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLV 612

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +GFA +G   EAL +F +M   G+E + +T  S  SA A +  + +G++ H  + K G  
Sbjct: 613 SGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYD 672

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
               V+NAL+  Y+KCG I             + +SW++++ G + +G G EAL+LF++M
Sbjct: 673 SETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDM 719

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
           +    +P  VTFVGVL ACSH G+VDEG SYF+ M + + ++PK EH+ C+VDLLGR+GL
Sbjct: 720 KQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGL 779

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           + +A  +++ M + P+A++WRTLL AC +H +  I E A S LL+LEPK S  YVL+SN+
Sbjct: 780 LSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNM 839

Query: 457 YAYEQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           YA   +W + ++  R M+K+R VKK PG S VE+ N V  FF GD++HP+ + I+  L  
Sbjct: 840 YAVSGKW-DCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRG 898

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +    GYVPR  ++ +D E  +K+     HSE++AIAF L++    TP+ V KNLRV
Sbjct: 899 LDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRV 958

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  IK +SK+  R I+VRD  RFHHFK G CSC+DYW
Sbjct: 959 CEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 182/371 (49%), Gaps = 39/371 (10%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMI 115
           ++Q+HA +I  G      +   ++   ++ L F    +S A  +F +++  +  +W  MI
Sbjct: 183 VEQIHAKTITSGF-----ESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMI 237

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            G +++     A+ L+ ++              +L A +K+     G+Q H + ++ GF 
Sbjct: 238 SGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFS 283

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S  +V N+LV +Y+  G++  A ++F  MS+RD V++NS+I+G A  G  N AL LF++M
Sbjct: 284 SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKM 343

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             +  +PD  T+ SL SACA +GAL  G++ H+Y  K G++ ++ V  +LLD Y KC  I
Sbjct: 344 NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDI 403

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A   F             L  G   N    ++ ++F +M+I G VP + T+  +L  C
Sbjct: 404 KTAHEFF-------------LCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           +  G  D G     ++  + G    +     ++D+  + G +  A + I   L   + V 
Sbjct: 449 TTLGATDLGEQIHTQVL-KTGFQFNVYVSSVLIDMYAKHGKLDHALK-IFRRLKENDVVS 506

Query: 416 WRTLLGACTIH 426
           W  ++   T H
Sbjct: 507 WTAMIAGYTQH 517



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 173/369 (46%), Gaps = 35/369 (9%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A N+F  +   ++  WN +   +           L+ +M    ++ D   +  +L+ 
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 153 ISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
            S  A   R  EQ H+  I +GFES  F+ N L+ +Y   G +  A KVFE +  RD V+
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS 232

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W ++I+G + NG   EA+ LF ++              + SAC ++     G++ H  V 
Sbjct: 233 WVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVL 278

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K G S    V NAL+  YS+ G + +A+++F  M +R+ VS+++L+ GLA  G+   AL 
Sbjct: 279 KQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALA 338

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LFK+M +    P  VT   +L AC+  G +  G   F     + G+   I   G ++DL 
Sbjct: 339 LFKKMNLDCQKPDCVTVASLLSACASVGALPNG-KQFHSYAIKAGMTSDIVVEGSLLDLY 397

Query: 392 GRAGLVKQAYEY-------------------IQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +   +K A+E+                   +Q   + PN   + ++L  CT  G + + 
Sbjct: 398 VKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG 457

Query: 433 EIARSTLLQ 441
           E   + +L+
Sbjct: 458 EQIHTQVLK 466



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 120/278 (43%), Gaps = 30/278 (10%)

Query: 159 VRMGEQTHSVAIRNGFESLVFVQN-SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           VR   QT    +     S  F     L+  Y AFG +  A  VF+ M  R L  WN + N
Sbjct: 77  VRANSQTFLWLLEGCLNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFN 136

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA-ELGALALGRRAHTYVWKVGLS 276
            F +         LFR M ++ VE D      +   C+    +     + H      G  
Sbjct: 137 TFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFE 196

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +  + N L+D Y K G + +A++VF  ++ R++VSW  ++ GL+ NG+ +EA+ LF ++
Sbjct: 197 SSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI 256

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGC--MVDL 390
                         VL AC+          +F+  K  +G++ K     E + C  +V L
Sbjct: 257 --------------VLSACTK-------VEFFEFGKQLHGLVLKQGFSSETYVCNALVTL 295

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             R+G +  A E I + +   + V + +L+      G+
Sbjct: 296 YSRSGNLSSA-EQIFHCMSQRDRVSYNSLISGLAQQGY 332


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 318/560 (56%), Gaps = 39/560 (6%)

Query: 96  AHNIFSHVQD----PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           A  +FS + D    PN+ +WN MI G+  S     AV ++  MH+ G +PD  T   +L 
Sbjct: 199 AKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLP 258

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL-- 209
           A+  L D+ MG   H   I+ G  S   V ++L+ MY       +  +VF+ M   D+  
Sbjct: 259 AVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGS 318

Query: 210 ---------------------------------VAWNSVINGFASNGKPNEALTLFREMA 236
                                            V+W S+I   + NG+  EAL LFREM 
Sbjct: 319 CNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQ 378

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             GV+P+  T+  L  AC  + AL  G+ AH +  + G+S +V V +AL+D Y+KCG I 
Sbjct: 379 IAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQ 438

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           A++  F  +  +N V W+ ++ G A++G  KEA+E+F  M+  G  P  ++F  VL ACS
Sbjct: 439 ASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
             G+ +EG  YF  M  +YGI  ++EH+ CMV LL RAG ++QAY  I+ M + P+A +W
Sbjct: 499 QSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVW 558

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LL +C +H + ++ E+A   L +LEP + G+Y+LLSN+YA +  W  V  VR  M  +
Sbjct: 559 GALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNK 618

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            ++K PG S +E+ N+V     GD+SHPQ  +I   L +++ ++K  GY P    V  D+
Sbjct: 619 GLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDV 678

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           EE++KE  L  HSEK+A+ F L+NT PG P++V+KNLR+C DCH+ IK IS    REI V
Sbjct: 679 EEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFV 738

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHFK+G CSC DYW
Sbjct: 739 RDTNRFHHFKEGACSCGDYW 758



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 211/467 (45%), Gaps = 84/467 (17%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           + SV       L    +S  + +Q HA  ++ G+  N+  L   L+    + +   + A 
Sbjct: 11  LDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGL-FNDTHLATKLLSHYAN-NMCFADAT 68

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +   V +PN+F+++T+I  +++      A+  +S+M   G+ PD    P  +KA + L+
Sbjct: 69  LVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLS 128

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD--------- 208
            ++   Q H +A  +GF+S  FVQ+SLVHMY     ++DA +VF+ M E D         
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 209 --------------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242
                                     L++WN +I GF  +G  +EA+ +F +M   G EP
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC---------- 292
           DG T+ S+  A  +L  L +G   H YV K GL  +  V++AL+D Y KC          
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 293 ---------------------GIIIAAQRVFREMRKR----NAVSWSTLVVGLAVNGFGK 327
                                G + ++ R+FR+++ +    N VSW++++   + NG   
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDI 368

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-----FSYFKRMKDEYGIMPKIE 382
           EALELF+EM+I G  P  VT   +L AC +   +  G     FS  +      GI   + 
Sbjct: 369 EALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR------GISTDVY 422

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               ++D+  + G + QA     + +   N V W  ++    +HG +
Sbjct: 423 VGSALIDMYAKCGRI-QASRICFDGIPTKNLVCWNAVIAGYAMHGKA 468



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 99/262 (37%), Gaps = 47/262 (17%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K  H FS+R G+   +  +G  LI         +  +   F  +   N+  WN +I GYA
Sbjct: 406 KAAHCFSLRRGIS-TDVYVGSALIDMYAKCG-RIQASRICFDGIPTKNLVCWNAVIAGYA 463

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  A+E++  M  SG KPD  ++  +L A S+      G                +
Sbjct: 464 MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGS---------------Y 508

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
             NS+   Y     V+    +  L+S                 GK  +A  + R M    
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRA---------------GKLEQAYAMIRRMP--- 550

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL--DFYSKCGIIIA 297
           V PD     +L S+C     ++LG  A   ++++  S   N  N +L  + Y+  G+   
Sbjct: 551 VNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPS---NPGNYILLSNIYASKGMWNE 607

Query: 298 AQRVFREM------RKRNAVSW 313
             RV R+M      RK    SW
Sbjct: 608 VNRV-RDMMKNKGLRKNPGCSW 628


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/522 (40%), Positives = 314/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ TWN +I  Y ++ N   AV L+ ++   G+K +  T+  +L   + 
Sbjct: 260 ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  H +    G++    V  +L+ +Y        A K+F  M  +D++ W  +
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
              +A NG   EAL LF+EM  EG  P   T+V++   CA L AL  GR+ H+++ +   
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V  AL++ Y KCG +  A  VF +M KR+ + W++++   A +G+  E L+LF +
Sbjct: 440 RMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQ 499

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ G     V+FV VL A SH G V +G+ YF  M  ++ I P  E +GC+VDLLGRAG
Sbjct: 500 MQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAG 559

Query: 396 LVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
            +++A + +  +    P+ ++W TLLGAC  H  +  A+ A   +L+ +P HSG YV+LS
Sbjct: 560 RIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLS 619

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA    W  V  +R+ M    VKK PG S +E+ NRV EF  GDRSHP+   I+A L 
Sbjct: 620 NVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELD 679

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            +  +++  GY+P T+ +  D+E+E KED L YHSE++AIAF L++T PGTP+RV+KNLR
Sbjct: 680 VLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLR 739

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH A K ISK+  REI+VRD  RFH+FKDG CSC+DYW
Sbjct: 740 VCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 191/398 (47%), Gaps = 8/398 (2%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           QE  +       + +L  CAS++  LK   ++H   ++ G    +  +G  LI  + +  
Sbjct: 97  QEEDVMPTKVTYVAILNACASTE-SLKDGMEIHGQILQQGFE-GDVFVGTALI-NMYNKC 153

Query: 91  FPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
             +  A + F  ++  ++ +W  MI    +     LA  LY +M + G+ P+  T   + 
Sbjct: 154 GSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVF 213

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            A      +  G+  + +      ES V V NS V+M+   G + DA ++FE M +RD+V
Sbjct: 214 NAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVV 273

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            WN VI  +  N    EA+ LF  +  +GV+ +  T V + +    L +LA G+  H  V
Sbjct: 274 TWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELV 333

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            + G   +  V  AL+  Y +C     A ++F +M  ++ ++W+ + V  A NGF KEAL
Sbjct: 334 KEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEAL 393

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +LF+EM++ G  P   T V VL  C+H   + +G      + +    M  +     ++++
Sbjct: 394 QLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETA-LINM 452

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            G+ G + +A    + M    + ++W ++LGA   HG+
Sbjct: 453 YGKCGKMAEAMSVFEKM-AKRDILVWNSMLGAYAQHGY 489



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 4/282 (1%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           KPDT  +  LL+  S   +V  G + H      GFE    V   L+ MYA  G V +A +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           VFE++  +D+ AW  +I  +   G  + AL +F +M  E V P   T V++ +ACA   +
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L  G   H  + + G   +V V  AL++ Y+KCG +  A   F+ +  R+ VSW+ ++  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM- 378
              +     A  L++ M++ G VP ++T   V  A      + EG   +  +    G+M 
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSS--GVME 238

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
             +      V++ G AGL+  A    ++M+   + V W  ++
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDMV-DRDVVTWNIVI 279



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 153/309 (49%), Gaps = 4/309 (1%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + LLQ C+S+K+    ++VH      G   NN   G  +       S P   A  +F  +
Sbjct: 8   VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVP--EAQQVFEIL 65

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +  ++F W  MI  Y +  +   A+ ++ +M    + P   TY  +L A +    ++ G 
Sbjct: 66  ERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGM 125

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H   ++ GFE  VFV  +L++MY   G V+ A   F+ +  RD+V+W ++I     + 
Sbjct: 126 EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHD 185

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +   A  L+R M  +GV P+  T+ ++F+A  +   L+ G+  +  V    +  +V V N
Sbjct: 186 QFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMN 245

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           + ++ +   G++  A+R+F +M  R+ V+W+ ++     N    EA+ LF  ++  G   
Sbjct: 246 SAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKA 305

Query: 344 GEVTFVGVL 352
            ++TFV +L
Sbjct: 306 NDITFVLML 314



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD    V+L   C+    +  GRR H +V   G   N  V   L+  Y++CG +  AQ+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  + +++  +W+ ++      G    AL +F +M+    +P +VT+V +L AC+    
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           + +G     ++  + G    +     ++++  + G V+ A++  +  L   + V W  ++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKR-LEHRDVVSWTAMI 178

Query: 421 GACTIHGHSAIA 432
            AC  H   A+A
Sbjct: 179 AACVQHDQFALA 190



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 94/214 (43%), Gaps = 42/214 (19%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
           + +L  CA  ++  K +Q+H+  I      N   +   +  A++++      M+ A ++F
Sbjct: 412 VAVLDTCAHLAALQKGRQIHSHIIE-----NRFRMEMVVETALINMYGKCGKMAEAMSVF 466

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             +   +I  WN+M+  YA+       ++L+++M + G+K D  ++  +L A+S      
Sbjct: 467 EKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALS------ 520

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                HS ++ +G++  V +                    F +    +L  +  V++   
Sbjct: 521 -----HSGSVTDGYQYFVAMLQD-----------------FSITPTPEL--YGCVVDLLG 556

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             G+  EA+ +  +++  G  PDG   ++L  AC
Sbjct: 557 RAGRIQEAVDIVLKLS--GCLPDGILWMTLLGAC 588


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 346/579 (59%), Gaps = 16/579 (2%)

Query: 47  TLLQVCASSKHKLKQV--HAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           ++L +CA S   +  V  H + I+HG    V ++N  +  Y  +        +  A  +F
Sbjct: 253 SMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFG------RLQDAQRVF 306

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             ++  ++ +WN++I  Y ++ +P+ A+  + +M   G++PD  T   L     +L+D R
Sbjct: 307 DGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRR 366

Query: 161 MGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           +G   H   +R    E  + + N+LV+MYA  G +  A  VFE +  RD+++WN++I G+
Sbjct: 367 IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGY 426

Query: 220 ASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           A NG  +EA+  +  M  EG  + P+  T VS+  A + +GAL  G + H  + K  L  
Sbjct: 427 AQNGLASEAIDAY-NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL 485

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +V V   L+D Y KCG +  A  +F E+ +  +V W+ ++  L ++G G++AL+LFK+M 
Sbjct: 486 DVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMR 545

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G     +TFV +L ACSH G+VDE    F  M+ EY I P ++H+GCMVDL GRAG +
Sbjct: 546 ADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYL 605

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           ++AY  + NM +  +A IW TLL AC IHG++ +   A   LL+++ ++ G YVLLSN+Y
Sbjct: 606 EKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIY 665

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A   +W    +VR       ++KTPG S V +G+ V  F+ G++SHPQ  EI+  L  + 
Sbjct: 666 ANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLN 725

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K+K  GYVP    V  D+EE+EKE+ L+ HSE++AI F +++T P +P+R+ KNLRVC 
Sbjct: 726 AKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCG 785

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A K ISK+  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 786 DCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   ++ +WN MI G+ ++ N   A+ +  +M    +K DT T   +L   ++
Sbjct: 201 AHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQ 260

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             DV  G   H   I++G ES VFV N+L++MY+ FG ++DA +VF+ M  RDLV+WNS+
Sbjct: 261 SNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSI 320

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I  +  N  P  AL  F+EM   G+ PD  T+VSL S   +L    +GR  H +V +   
Sbjct: 321 IAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW 380

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L  ++ + NAL++ Y+K G I  A+ VF ++  R+ +SW+TL+ G A NG   EA++ + 
Sbjct: 381 LEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN 440

Query: 335 EMEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            ME G   VP + T+V +L A SH G + +G     R+     +   +    C++D+ G+
Sbjct: 441 MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFVATCLIDMYGK 499

Query: 394 AGLVKQA----YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            G ++ A    YE  Q   +P     W  ++ +  IHGH   A
Sbjct: 500 CGRLEDAMSLFYEIPQETSVP-----WNAIISSLGIHGHGEKA 537



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 165/294 (56%), Gaps = 8/294 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           KQ+HA  +  G   +   L + + +YA +     +S +   F H+Q  NIF+WN+M+  Y
Sbjct: 68  KQLHALLLVLGKAQDVVLLTQLVTLYATLG---DLSLSSTTFKHIQRKNIFSWNSMVSAY 124

Query: 119 AESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
                   +++  +++  +SG++PD +T+P +LKA   LAD   GE+ H   ++ GFE  
Sbjct: 125 VRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHD 181

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V+V  SL+H+Y+ FG V+ A KVF  M  RD+ +WN++I+GF  NG   EAL +   M +
Sbjct: 182 VYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKT 241

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           E V+ D  T+ S+   CA+   +  G   H YV K GL  +V V+NAL++ YSK G +  
Sbjct: 242 EEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQD 301

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           AQRVF  M  R+ VSW++++     N     AL  FKEM   G  P  +T V +
Sbjct: 302 AQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            ++ + +Q H++ +  G    V +   LV +YA  G +  +   F+ +  +++ +WNS++
Sbjct: 62  TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMV 121

Query: 217 NGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + +   G+  +++    E+ S  GV PD YT   +  AC    +LA G + H +V K+G 
Sbjct: 122 SAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWVLKMGF 178

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V  +L+  YS+ G +  A +VF +M  R+  SW+ ++ G   NG   EAL +   
Sbjct: 179 EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDR 238

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M+        VT   +L  C+    V  G
Sbjct: 239 MKTEEVKMDTVTVSSMLPICAQSNDVVGG 267


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/570 (38%), Positives = 347/570 (60%), Gaps = 38/570 (6%)

Query: 85  AIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIK 140
           A+VSL+     M  A ++F  +   +I +WN MI GY ++     A++L+S+M H S + 
Sbjct: 235 AMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA 294

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD  T   +L A + L +VR+G+Q H+  +R        V N+L+  YA  G V++A ++
Sbjct: 295 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 354

Query: 201 ---------------------------------FELMSERDLVAWNSVINGFASNGKPNE 227
                                            F +M+ RD+VAW ++I G+  NG+ +E
Sbjct: 355 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 414

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ LFR M + G EP+ YT+ ++ S CA L  L  G++ H    +  L  + +V+NA++ 
Sbjct: 415 AIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIIT 474

Query: 288 FYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            Y++ G    A+R+F ++  ++  ++W++++V LA +G G+EA+ LF+EM   G  P  +
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 534

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T+VGVL ACSH G V+EG  Y+ ++K+E+ I P++ H+ CMVDLL RAGL  +A E+I+ 
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+A+ W +LL AC +H ++ +AE+A   LL ++P +SG Y  ++N+Y+   RW + 
Sbjct: 595 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 654

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             + +   ++ V+K  G S   + +++  F   D  HPQ + ++AM A + +++K  G+V
Sbjct: 655 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P  ++V  D+++E KE+ LS HSEK+AIAF L++T   T +RV+KNLRVC DCH AIK I
Sbjct: 715 PDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAI 774

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SKV  REI+VRD +RFHHF+DG CSC+DYW
Sbjct: 775 SKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 197/498 (39%), Gaps = 107/498 (21%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           + ++ + S  ++ A  +F+ + + +  +W  M+ G   +     A++    M   G  P 
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   +L + +      +G + HS  ++ G  S V V NS+++MY   G  + A  VFE
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 203 L-------------------------------MSERDLVAWNSVINGFASNGKPNEALTL 231
                                           M  R +V+WN++I G+  NG   +AL L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 232 FREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           F  M  E  + PD +T+ S+ SACA LG + +G++ H Y+ +  ++ N  V NAL+  Y+
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 291 KCGIIIAAQRV---------------------------------FREMRKRNAVSWSTLV 317
           K G +  A+R+                                 F  M  R+ V+W+ ++
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG------------- 364
           VG   NG   EA++LF+ M   G  P   T   VL  C+    +D G             
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 365 ------------------FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
                             F + +RM D+     +   +  M+  L + G  ++A    + 
Sbjct: 464 RSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 407 ML---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-----GDYVLLSNLYA 458
           ML   + P+ + +  +L AC+   H+      +    Q++ +H        Y  + +L A
Sbjct: 524 MLRAGVEPDRITYVGVLSACS---HAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 580

Query: 459 YEQRWLNVQEVRRTMVKE 476
               +   QE  R M  E
Sbjct: 581 RAGLFSEAQEFIRRMPVE 598



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 40/279 (14%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  NSL+ M+A  G + DA  VF  M ERD V+W  ++ G    G+  EA+    +M +
Sbjct: 98  VFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA 157

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI--- 294
           +G  P  +T+ ++ S+CA   A A+GR+ H++V K+GL   V V N++L+ Y KCG    
Sbjct: 158 DGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAET 217

Query: 295 ----------------------------IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
                                       +  A+ +F  M  R+ VSW+ ++ G   NG  
Sbjct: 218 ASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLD 277

Query: 327 KEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            +AL+LF  M       P E T   VL AC++ G V  G    +Y  R +  Y      +
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAY----NSQ 333

Query: 383 HFGCMVDLLGRAGLVKQAYEYI-QNMLMPPNAVIWRTLL 420
               ++    ++G V+ A   + Q+M    N + +  LL
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           NV   N+LL  ++K G +  A+ VF EM +R+AVSW+ +VVGL   G   EA++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 338 IGGFVPGEVTFVGVLYACS-----------------------------------HCGMVD 362
             GF P + T   VL +C+                                    CG  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDL---LGRAGLVKQAYEYIQNMLMPPNAVI-WRT 418
              + F+RM      +  +  +  MV L   LGR  L +  +E      MP  +++ W  
Sbjct: 217 TASTVFERMP-----VRSVSSWNAMVSLNTHLGRMDLAESLFES-----MPGRSIVSWNA 266

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           ++     +G  A A    S +L        ++ + S L A
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/514 (42%), Positives = 307/514 (59%), Gaps = 10/514 (1%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+ F  N+++R  +ES     A+    +M   G + +  +   LLK    L+  R   Q 
Sbjct: 378 PSTFCCNSILRCLSESD----ALSFLRRMRTLGRRGNAFSLAILLKPCRTLSHAR---QL 430

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+  +  G      +  SL+  YA  G    A KVF+ M  +D VAWN +I  +A N + 
Sbjct: 431 HANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRT 490

Query: 226 NEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            + L LF EM      V+PD  T + L  AC  LGAL  G +   Y  + G    + V N
Sbjct: 491 KDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRN 550

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +++  Y++CG +  A +VF    +++ V+WS +++GLA NGFG++A+  F+EM   G VP
Sbjct: 551 SVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVP 610

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
              TF GVL ACSH G+VDEGF +F  M+ EY +MP + H+GC+VDL+GRAGL+ +AYE 
Sbjct: 611 DGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYEL 670

Query: 404 I-QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           + + M + P+A IWRTLLGAC IHGH  + E   S L++L+ + +GDYVLL N YA    
Sbjct: 671 VVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAGD 730

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W  V EVR+ M +  ++ TPG + VEL   + EF   D SHP+  EI+  L EI + L++
Sbjct: 731 WEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLRI 790

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GYVP   +   D++ E KE AL+YHSEK+AIAF L+      P+R+ KNLRVC DCH  
Sbjct: 791 AGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNF 850

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            K+ S VY+R ++VRDR+RFHHF  G CSC DYW
Sbjct: 851 TKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 350/607 (57%), Gaps = 51/607 (8%)

Query: 54  SSKHKLKQVHAFSIRHGVPLNN---PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFT 110
            S  +L+Q H+  IR G+  +N   P L  +   A  S S  ++YA  +F  +  P+ F 
Sbjct: 33  QSMSQLRQYHSQIIRLGLSSHNHLIPPLINFC--ARASTSDALTYALKLFDSIPQPDAFL 90

Query: 111 WNTMIRGYAES----ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           +NT+I+G+  S     N +L   LYS M  + + P+  T+P LL A  K   ++ G Q H
Sbjct: 91  YNTIIKGFLHSQLLPTNSILL--LYSHMLQNSVLPNNFTFPSLLIACRK---IQHGMQIH 145

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           +   + GF +     NSL+HMY  F  +++A +VF  +   D V+W S+I+G++  G  +
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205

Query: 227 EALTLFREMASEGVEP--------------------------------DGYTMVSLFSAC 254
           EA T+F+ M  +                                    D +   ++ SAC
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSAC 265

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVS 312
             LGAL  G+  H Y+ + G+  +  +  A++D Y KCG +  A +VF  +    R   S
Sbjct: 266 TGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISS 325

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ ++ GLA++G G+ A++LFKEME     P ++TF+ +L AC+H G+V+EG +YF  M 
Sbjct: 326 WNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMI 385

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             YGI P++EHFGCMVDLLGRAG+V +A + I  M + P+  +  TLLGAC  H +  + 
Sbjct: 386 RVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELG 445

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           E     +++LEP +SG YVLL+NLYA   +W +  +VR+ M    VKK PG S++EL   
Sbjct: 446 EEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGT 505

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF--ADIEEEEK-EDALSYHS 549
           V EF  G+R+HPQ +E+HA + E+ + LK  GYV  T  V    D +EEE  E+ L YHS
Sbjct: 506 VHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHS 565

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+AIAF L  T PG  +R++KNLR+C DCH A KLIS V+ REI+VRDR+RFH FK G 
Sbjct: 566 EKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQ 625

Query: 610 CSCRDYW 616
           CSC+DYW
Sbjct: 626 CSCQDYW 632


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/524 (41%), Positives = 315/524 (60%), Gaps = 8/524 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F+     ++FTW  M+ GY ++     A + + +M V   K +      L   
Sbjct: 248 LSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV---KNEISYNAMLAGY 304

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           +     V  GE   ++  RN     +   N+++  Y   G +  A K+F++M +RD V+W
Sbjct: 305 VQYKKMVIAGELFEAMPCRN-----ISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSW 359

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I+G+A NG   EAL +F EM  +G   +  T     S CA++ AL LG++ H  V K
Sbjct: 360 AAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK 419

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V NALL  Y KCG    A  VF  + +++ VSW+T++ G A +GFG++AL L
Sbjct: 420 AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVL 479

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M+  G  P E+T VGVL ACSH G++D G  YF  M  +Y + P  +H+ CM+DLLG
Sbjct: 480 FESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLG 539

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +++A   ++NM   P A  W  LLGA  IHG++ + E A   + ++EP++SG YVL
Sbjct: 540 RAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVL 599

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNLYA   RW++V ++R  M +  V+K  G+S VE+ N++  F +GD  HP+ + I+A 
Sbjct: 600 LSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAF 659

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+  K++ EGYV  T+ V  D+EEEEKE  L YHSEK+A+AF ++    G P+RV+KN
Sbjct: 660 LEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKN 719

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK ISK+  R I++RD  RFHHF +G CSC DYW
Sbjct: 720 LRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 155/356 (43%), Gaps = 57/356 (16%)

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
           +DP+I TWN  I  +  + +   A+ +++ M   S +  +     +L  A   LA     
Sbjct: 42  KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLA----- 96

Query: 163 EQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
                   R+ F+ +    +F  N ++  Y     + +A K+F+LM ++D+V+WN++++G
Sbjct: 97  --------RDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSG 148

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG  +EA  +F +M       +  +   L +A    G L   RR    +++   +  
Sbjct: 149 YAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARR----LFESQSNWE 200

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           +   N L+  Y K  ++  A+++F  M  R+ +SW+T++ G A  G   +A  LF E  I
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPI 260

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDE---------------------- 374
                   T+  ++      GMVDE   YF  M  K+E                      
Sbjct: 261 RDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGEL 316

Query: 375 YGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +  MP   I  +  M+   G+ G + QA +   +M+   + V W  ++     +GH
Sbjct: 317 FEAMPCRNISSWNTMITGYGQNGGIAQARKLF-DMMPQRDCVSWAAIISGYAQNGH 371


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/626 (36%), Positives = 350/626 (55%), Gaps = 69/626 (11%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +L Q+HA  I H   L++  L    + +  SL   ++++  +F+H +  N+FT+N +IRG
Sbjct: 96  QLHQIHAQIIIHN--LSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRG 153

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
              +++   A+  +  M  SGIKPD  TYPF+LK+++ L    +G   H + +R G E  
Sbjct: 154 LTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELD 213

Query: 178 VFVQNSLVHMY-------AAF-----------------------------GHVKDACKVF 201
            FV+ SLV MY       +AF                             G +K A K+F
Sbjct: 214 SFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLF 273

Query: 202 ELMSERDLVAWNSVINGFASNGKPN-------------------------------EALT 230
           + M +++ V+W+++I+GFA NG  +                               +AL+
Sbjct: 274 KAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALS 333

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           +F +M  EGV P+ +T+VS  SACA++G L  G R H Y+   GL     +  AL+D Y+
Sbjct: 334 MFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYA 393

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG I +A  VF E  +++  +W+ ++ G A++G  ++A+  FK+M   G  P EV F+ 
Sbjct: 394 KCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLA 453

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           +L AC H G VD G ++F  M+ +Y I P ++H+  +VD+LGR+G +K+A  +I+ M M 
Sbjct: 454 LLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMN 513

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           P+ VIW  L  AC  H  + +A+ A + LL+LEP H+G+Y+ LSN YA   +W + + VR
Sbjct: 514 PDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVR 573

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M    V K  G S +E+  +V  F  GD  H  ++ I   L EI      +GY+P TE
Sbjct: 574 VLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTE 633

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            V  ++E+EEKED L  H EK+A+AF L+ T+PG  +R+VKNL+VC DCH  +K  SK+ 
Sbjct: 634 WVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKIS 693

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            REI++RD  RFHHFKDG CSCRD+W
Sbjct: 694 QREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 138/376 (36%), Gaps = 73/376 (19%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           I P T T    +  I     +    Q H+  I +   S   +   L+   +    +  + 
Sbjct: 74  IPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSL 133

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
            VF     ++L  +N++I G  +N     A+  FR M   G++PD  T   +  + A L 
Sbjct: 134 AVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLF 193

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFY----------------------------- 289
           +  LG   H  + + G+  +  V  +L+D Y                             
Sbjct: 194 STELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLW 253

Query: 290 -------SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME----- 337
                   K G +  A ++F+ M K+  VSWSTL+ G A NG    A+ELF +M      
Sbjct: 254 NVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVV 313

Query: 338 -----IGGFV---------------------PGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
                + GF                      P   T V  L AC+  G ++ G    K +
Sbjct: 314 SWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYI 373

Query: 372 KDEYGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS- 429
           KD    +   E  G  +VD+  + G ++ A E         +   W  ++    IHGHS 
Sbjct: 374 KDNG--LHLTEALGTALVDMYAKCGNIESASEVFGET-EQKSIRTWTVMIWGWAIHGHSE 430

Query: 430 -AIAEIARSTLLQLEP 444
            AIA   +     ++P
Sbjct: 431 QAIACFKQMMFAGIKP 446


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/573 (39%), Positives = 338/573 (58%), Gaps = 17/573 (2%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL-SFPMSYAHNIFSHVQD 105
           T+L        K+K+ H    +  +P   PD   Y I  +  L S+ +  A   F+ +  
Sbjct: 109 TMLSGYTKVAGKVKEAHELFDK--IP--EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPV 164

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLADVRMGE 163
            +I +WNT+I G+A++     A +L+S M      P+ +  ++  ++    +  D+   E
Sbjct: 165 KDIASWNTLISGFAQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + +      G +S+V V+ +++  Y  FG V+ A ++F+ M+ ++LV WNS+I G+  N 
Sbjct: 219 ELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENC 274

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  + L +F+ M    V P+  ++ S+   C+ L AL LGR+ H  V K  LS +     
Sbjct: 275 RAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT 334

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  Y KCG + +A ++F EM +++ +SW+ ++ G A +G G++AL LF +M  G   P
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             +TFV V+ AC+H G VD G  YFK MK E+GI  K  H+ C++DLLGRAG + +A   
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I+ M   P+A I+ TLLGAC IH +  +AE A   LL L+P  +  YV L+N+YA   +W
Sbjct: 455 IKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V +VR+ M +  V K PG+S +E+ +   EF   DR HP+   IH  L E+  K+KL 
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLA 574

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GYVP  E    D+EEE KE  L +HSEK+AIAF L+ TAPGTP+RV KNLRVC DCH AI
Sbjct: 575 GYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAI 634

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K IS +  REI+VRD +RFHHF++G CSC DYW
Sbjct: 635 KFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 143/334 (42%), Gaps = 52/334 (15%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           A N+F  +      TWNTM+ GY + A  +  A EL+ K+     +PD+ +Y  +     
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP----EPDSVSYNIM----- 142

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
                                        LV    ++G V+ A   F  M  +D+ +WN+
Sbjct: 143 -----------------------------LVCYLRSYG-VEAALAFFNKMPVKDIASWNT 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+GFA NG+  +A  LF  M     E +G +  ++ S   E G L      +     VG
Sbjct: 173 LISGFAQNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYK---NVG 225

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  +V V  A+L  Y K G +  A+R+F+ M  +N V+W++++ G   N   ++ L++FK
Sbjct: 226 MK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFK 284

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M      P  ++   VL  CS+   +  G     ++  +  +         ++ +  + 
Sbjct: 285 TMIESRVRPNPLSLSSVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 395 GLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
           G +  A++    + MP   VI W  ++     HG
Sbjct: 344 GDLDSAWKLF--LEMPRKDVISWNAMISGYAQHG 375


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 352/558 (63%), Gaps = 4/558 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA+++++ +  +N  +G  LI  + S    ++YA  +F  + + ++ +W T+I  YA
Sbjct: 233 KEIHAYAMKNWLD-SNLRIGNTLI-DMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYA 290

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++     A++L  K+   G+  DT      L A S L  +   ++ H   ++ G   L+ 
Sbjct: 291 QNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLM- 349

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           +QN ++ +YA  G++  A ++FE +  +D+V+W S+I+ +  NG  NEAL +F  M    
Sbjct: 350 MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETS 409

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           VEPD  T+VS+ SA A L AL  G+  H ++++ G     +  N+L+D Y+ CG +  A 
Sbjct: 410 VEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAY 469

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VF   R ++ V W+T++    ++G GK A+ELF  ME    +P  +TF+ +LYACSH G
Sbjct: 470 KVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSG 529

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +++EG    + MK +Y + P  EH+ C+VDLLGRA  +++AY ++++M + P A +W   
Sbjct: 530 LINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAF 589

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC IH +  + EIA   LL L+P   G YVL+SN++A   RW +V+EVR  M    +K
Sbjct: 590 LGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLK 649

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEE 538
           K PG S +E+GN+V  F + D+SHP++ +I+  LA+IT+KL+ E GYVP+T+ V  ++ +
Sbjct: 650 KNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGK 709

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEK   L  HSE++AIA+ L++T+ GTP+R+ KNLRVC DCH   KL+SK + RE++VRD
Sbjct: 710 EEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRD 769

Query: 599 RSRFHHFKDGHCSCRDYW 616
            SRFHHF+DG CSC D+W
Sbjct: 770 ASRFHHFEDGVCSCGDFW 787



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 134/232 (57%), Gaps = 1/232 (0%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M V G+  D+ T+P +LKA   + D+  G + H + I+ G++S+VFV NSLV MYA    
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 194 VKDACKVFELMSER-DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
           +  A K+F+ M+ER D+V+WNS+I+ ++ NG+  EAL LFREM   GV  + YT+V+   
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           AC +     LG   H  + K     +V V NAL+  + + G +  A R+F E+ +++ ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           W++++ G   NG   EAL+ F  ++     P EV+ + +L A    G +  G
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 168/326 (51%), Gaps = 13/326 (3%)

Query: 37  PITSVVRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           P  S    C+  L+ C   +  H+  ++H   I+ G      D   ++  ++VS+    +
Sbjct: 7   PFDSFTFPCV--LKACGVVEDIHRGAEIHGLIIKCGY-----DSIVFVANSLVSMYAKCN 59

Query: 95  Y---AHNIFSHVQDPN-IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
               A  +F  + + N + +WN++I  Y+ +   + A+ L+ +M  +G+  +T+T    L
Sbjct: 60  DILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAAL 119

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           +A    +  ++G + H+  +++     V+V N+LV M+  FG +  A ++F+ + E+D +
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNI 179

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            WNS+I GF  NG  NEAL  F  +    ++PD  +++S+ +A   LG L  G+  H Y 
Sbjct: 180 TWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYA 239

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K  L  N+ + N L+D YSKC  +  A  VF +M  ++ +SW+T++   A N    EAL
Sbjct: 240 MKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEAL 299

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACS 356
           +L ++++  G     +     L ACS
Sbjct: 300 KLLRKVQTKGMDVDTMMIGSTLLACS 325


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/521 (39%), Positives = 327/521 (62%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +F  +++ +  +W TMI G  ++     A++L+  M   G+  D +T+  +L A   
Sbjct: 223 SKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGG 282

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  ++ G++ H++ IR+G+   VFV ++LV MY     V+ A  VF+ M+ +++V+W ++
Sbjct: 283 LRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+  NG   EA+ +F +M   G+EPD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL 402

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  + ++F EM  R+ VSW+ LV G A  G   E ++LF+ 
Sbjct: 403 ISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M + G  P  VTF+ VL ACS  G+V+ G  YF+ M  ++GI+P  +H+ CM+DL GRAG
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A  +I  M   P+++ W TLL +C ++G+  I + A  +LL+L+P++   Y+LLS+
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSS 582

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA + +W NV ++RR M ++  +K PG S ++  ++V+ F   D+S P +++I+A L +
Sbjct: 583 IYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEK 642

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGYVP   +V  D+E+ EK   L++HSEK+AIAF L+    G P+RVVKNLRV
Sbjct: 643 LNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRV 702

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+VRD  RFH FKDG CSC D+W
Sbjct: 703 CGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 73/438 (16%)

Query: 50  QVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKY--LIYAIVSLSFPMSYAHNIFSHVQD 105
           ++C  ++++   K++H   I+    L NP+   Y  LI A   L   ++YA ++F  +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIK---SLTNPETFLYNNLINAYSKLG-NITYARHVFDKMPQ 68

Query: 106 PNIFTWNTMIRGYAESA--------------------NPLL-----------AVELYSKM 134
           PN F+WNTM+  Y++S                     N L+           AV+ Y+ M
Sbjct: 69  PNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSM 128

Query: 135 HVSGI-KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG- 192
              G+   +  T+  +L  +S    V +G Q H   ++ GF + VFV +SLV MYA  G 
Sbjct: 129 MKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGL 188

Query: 193 ------------------------------HVKDACKVFELMSERDLVAWNSVINGFASN 222
                                          VKD+ ++F  M ERD ++W ++I G   N
Sbjct: 189 VSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQN 248

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G   EA+ LFR+M  EG+  D YT  S+ +AC  L AL  G+  HT + + G + NV V 
Sbjct: 249 GLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVG 308

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           +AL+D Y KC  +  A+ VF+ M  +N VSW+ ++VG   NGF +EA+ +F +M+  G  
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P + T   V+ +C++   ++EG + F       G++  I     ++ L G+ G ++ + +
Sbjct: 369 PDDFTLGSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQ 427

Query: 403 YIQNMLMPPNAVIWRTLL 420
               M    + V W  L+
Sbjct: 428 LFDEMSF-RDEVSWTALV 444



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 149/286 (52%), Gaps = 13/286 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++H   IR G   +N  +G  L+         + YA  +F  + + N+ +W  M+ GY 
Sbjct: 290 KEIHTLIIRSGYN-HNVFVGSALVDMYCKCR-SVRYAEAVFKRMANKNVVSWTAMLVGYG 347

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++     AV ++  M  +GI+PD  T   ++ + + LA +  G Q H  A+ +G  S + 
Sbjct: 348 QNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFIT 407

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+L+ +Y   G ++D+ ++F+ MS RD V+W ++++G+A  GK NE + LF  M  +G
Sbjct: 408 VSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQG 467

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWK----VGLSDNVNVNNALLDFYSKCGII 295
           ++PD  T +++ SAC+  G +  G++    + K    +  SD+      ++D + + G +
Sbjct: 468 LKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHY---TCMIDLFGRAGRL 524

Query: 296 IAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
             A+    +M    +++ W+TL+    + G    GK A E   E++
Sbjct: 525 EEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELD 570


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/529 (41%), Positives = 318/529 (60%), Gaps = 18/529 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F      ++FTW  M+ GY ++     A   + +M      P+ +        
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM------PEKNE------- 297

Query: 153 ISKLADVRMGEQTHSVAI-RNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           +S  A +    QT  + I R  FES+    +   N+++  Y   G +  A K F++M +R
Sbjct: 298 VSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+W ++I G+A +G   EAL +F E+  +G   +  T     S CA++ AL LG++ H
Sbjct: 358 DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
               K+G      V NALL  Y KCG I  A   F  + +++ VSW+T++ G A +GFG+
Sbjct: 418 GQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           +AL +F+ M+  G  P E+T VGVL ACSH G++D G  YF  M  +YG++P  +H+ CM
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           +DLLGRAG +++A + I+NM   P A  W  LLGA  IHG++ + E A   + ++EP++S
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 597

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G YVLLSNLYA   RW++  ++R  M    V+K PG+S VE+ N++  F +GD SHP+ E
Sbjct: 598 GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKE 657

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
            I+A L E+  K++ EGYV  T+ V  D+EEEEKE  L YHSEK+A+AF ++    G P+
Sbjct: 658 RIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPI 717

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV+KNLRVC DCH AIK ISK+  R I++RD  RFHHF +G CSC DYW
Sbjct: 718 RVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 53/364 (14%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKA 152
           S  +N    V+DP+I  WN  I  +  + +   A+ +++ M   S +  +     +L  +
Sbjct: 35  SVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS 94

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
              LA             RN F+ +    +F  N ++  Y     + DA ++F+LM E+D
Sbjct: 95  KFNLA-------------RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKD 141

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMV------------------- 248
           +V+WNS+++G+A NG  +EA  +F  M  +  +  +G                       
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD 201

Query: 249 -SLFSACAELGALALGRRAHTYVW---KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             L S    +G     ++     W   K+ + D ++  N ++  Y++ G +  A+R+F E
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW-NTMISGYAQGGGLSQARRLFDE 260

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
              R+  +W+ +V G   NG   EA   F EM        EV++  ++        +D  
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIA 316

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
              F+ M         I  +  M+   G+ G + QA ++  +M+   + V W  ++    
Sbjct: 317 RELFESMP-----CRNISSWNTMITGYGQIGDIAQARKFF-DMMPQRDCVSWAAIIAGYA 370

Query: 425 IHGH 428
             GH
Sbjct: 371 QSGH 374


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 340/581 (58%), Gaps = 12/581 (2%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYA 96
           TS+++ C     V + S    +Q+H   +  G+    PD  L   L+  + +    + +A
Sbjct: 66  TSILQSC-----VASGSLRAGRQLHGRLLVSGL---GPDTVLSTKLV-DLYAACGQVGHA 116

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  +   N+F WN +IR YA       AV LY  M   G++PD  TYP +LKA + L
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAAL 176

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            D+  G + H       +   VFV   +V MYA  G V DA  VF+ ++ RD V WNS+I
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMI 236

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
             +  NG+P EAL L R+MA+ G+ P   T+VS  SA A+  AL  GR  H + W+ G  
Sbjct: 237 AAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFG 296

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
               +  +L+D Y+K G +  A+ +F ++ KR  VSW+ ++ G  ++G   EAL LF +M
Sbjct: 297 LQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKM 356

Query: 337 EIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           +    V P  +TFVGVL AC+H GMV+E   +F  M + Y I P ++H+ C++D+LG  G
Sbjct: 357 KGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTG 416

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             ++AY+ I+ M + P++ IW  LL  C IH +  + E+A   L++LEP+ +G+YV LSN
Sbjct: 417 RFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSN 476

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W     VR+ M    +KK    S +EL  +   F +GD SHP+++EI+  L  
Sbjct: 477 IYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELER 536

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +   +   GYVP    VF +++++EK + +  HSE++AIAF L++T PGT + V KNLRV
Sbjct: 537 LEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRV 596

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+ IKLIS++  REI++RD +R+HHF +G CSC+DYW
Sbjct: 597 CEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 22/314 (7%)

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S NP LA   ++  H        HT   +L++      +R G Q H   + +G      +
Sbjct: 50  STNPRLASSPHAYHH--------HTS--ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVL 99

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
              LV +YAA G V  A ++F+ M +R++  WN +I  +A  G    A+ L+R M   GV
Sbjct: 100 STKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGV 159

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           EPD +T   +  ACA L  L  GR  H  V       +V V   ++D Y+KCG +  A+ 
Sbjct: 160 EPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARA 219

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-- 358
           VF  +  R+AV W++++     NG   EAL L ++M   G  P   T V  + A +    
Sbjct: 220 VFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAA 279

Query: 359 ---GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
              G    GF +    +  +G+  K++    +VD+  ++G V Q    +   LM    V 
Sbjct: 280 LPRGRELHGFGW----RRGFGLQDKLKT--SLVDMYAKSGWV-QVARVLFEQLMKRELVS 332

Query: 416 WRTLLGACTIHGHS 429
           W  ++    +HGH+
Sbjct: 333 WNAMICGYGMHGHA 346


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/563 (41%), Positives = 323/563 (57%), Gaps = 45/563 (7%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YA N+FS V  P+ F    ++R    +  PLL   ++S +     +      PFL  A S
Sbjct: 90  YALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLR----RAHGAELPFLPFAFS 145

Query: 155 KLADVRMGEQTHSV--------AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
            LA      ++            +  GF+   FV+NSL+  Y A G V  A KVF+ M E
Sbjct: 146 TLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVE 205

Query: 207 RDLVAWNSV-------------------------------INGFASNGKPNEALTLFREM 235
           +D+++W S+                               + G+A N  P +AL +F  M
Sbjct: 206 KDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRM 265

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           A  G+  D  ++    SACA+LGAL           + G  +NV V + L+D Y+KCG+I
Sbjct: 266 AELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLI 325

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
             A +VF  M+++N  ++S+++ GLA +G   EA+ LFKEM       P  VTF+GVL A
Sbjct: 326 DEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTA 385

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH GMV EG  YF +MKD+YGIMP  +H+ CMVDLLGRAGLV +A + +++M + P+  
Sbjct: 386 CSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGG 445

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W  LLGAC IHG S IA++    L +LEP+  G+YVLLSN+ A   +W  V +VR  M 
Sbjct: 446 VWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMR 505

Query: 475 KERVKKTPGHSLVE-LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
           K+R+KK P  SL E     V +FF GD +HP+T EI   L E+  KLKLEGYVP   ++ 
Sbjct: 506 KQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIV 565

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D+ +EEKE  L  HSEK+A++F L+    G  +R++KNLR+C DCHL ++L+S+V S E
Sbjct: 566 YDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVE 625

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRD  RFHHFK+G CSC  +W
Sbjct: 626 IIVRDNMRFHHFKNGECSCGGFW 648



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 114/215 (53%), Gaps = 2/215 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F      ++  W  M+ GYA++A P+ A+E++ +M   G+  D  +    + A
Sbjct: 224 MRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISA 283

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L  +R       +A R GF + V V + LV MYA  G + +A KVF  M E+++  +
Sbjct: 284 CAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTY 343

Query: 213 NSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           +S+I G AS+G+ +EA+ LF+EM +   VEP+  T + + +AC+  G +  GR     + 
Sbjct: 344 SSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMK 403

Query: 272 -KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            K G+  + +    ++D   + G++  A  + R M
Sbjct: 404 DKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSM 438


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 315/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  + TWN MI G  +       + L+ +MH  G  PD +T   +    + 
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 188

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  V +G+Q H   I+ G E  + V +SL HMY   G ++D   V   M  R+LVAWN++
Sbjct: 189 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 248

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P   L L++ M   G  P+  T V++ S+C++L     G++ H    K+G 
Sbjct: 249 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 308

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V V ++L+  YSKCG +  A + F E    + V WS+++     +G G EA+ELF  
Sbjct: 309 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNT 368

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           M E       EV F+ +LYACSH G+ D+G   F  M ++YG  P ++H+ C+VDLLGRA
Sbjct: 369 MAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRA 428

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + QA   I++M +  + VIW+TLL AC IH ++ +A+     +LQ++P  S  YVLL+
Sbjct: 429 GCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLA 488

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N++A  +RW +V EVR++M  + VKK  G S  E    V +F MGDRS  +++EI++ L 
Sbjct: 489 NVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLK 548

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T ++KL+GY P T +V  D++EEEKE  L  HSEK+A+AF L+    G P+R++KNLR
Sbjct: 549 ELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 608

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH+A K IS + +REI +RD SRFHHF +G CSC DYW
Sbjct: 609 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 167/356 (46%), Gaps = 10/356 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMH----VSGIKPDTHTYPFLLKAISKLADVRMG 162
           NIFT  ++   + +S     ++    ++H    VSG   D      L+   SKL D    
Sbjct: 39  NIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSA 98

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
              +    +  + S     N L++ Y   G + +A KVF+ M +R L  WN++I G    
Sbjct: 99  VAVYGRMRKKNYMS----SNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQF 154

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
               E L+LFREM   G  PD YT+ S+FS  A L ++++G++ H Y  K GL  ++ VN
Sbjct: 155 EFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVN 214

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           ++L   Y + G +   + V R M  RN V+W+TL++G A NG  +  L L+K M+I G  
Sbjct: 215 SSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCR 274

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P ++TFV VL +CS   +  +G         + G    +     ++ +  + G +  A +
Sbjct: 275 PNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 333

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
                    + V+W +++ A   HG    A    +T+ +       +   L+ LYA
Sbjct: 334 AFSER-EDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 388


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 338/573 (58%), Gaps = 17/573 (2%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL-SFPMSYAHNIFSHVQD 105
           T+L        K+K+ H    +  +P   PD   Y I  +  L S+ +  A   F+ +  
Sbjct: 109 TMLSGYTKVAGKVKEAHELFDK--IP--EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPV 164

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLADVRMGE 163
            +I +WNT+I G+A++     A +L+S M      P+ +  ++  ++    +  D+   E
Sbjct: 165 KDIASWNTLISGFAQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + +      G +S+V V+ +++  Y  FG V+ A ++F+ M+ ++LV WNS+I G+  N 
Sbjct: 219 ELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENC 274

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +  + L +F+ M    V P+  ++ S+   C+ L AL LGR+ H  V K  LS +     
Sbjct: 275 RAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT 334

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  Y KCG + +A ++F EM +++ ++W+ ++ G A +G G++AL LF +M  G   P
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             +TFV V+ AC+H G VD G  YFK MK E+GI  K  H+ C++DLLGRAG + +A   
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I+ M   P+A I+ TLLGAC IH +  +AE A   LL L+P  +  YV L+N+YA   +W
Sbjct: 455 IKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V +VR+ M +  V K PG+S +E+ +   EF   DR HP+   IH  L E+  K+KL 
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLA 574

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           GYVP  E    D+EEE KE  L +HSEK+AIAF L+ TAPGTP+RV KNLRVC DCH AI
Sbjct: 575 GYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAI 634

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K IS +  REI+VRD +RFHHF++G CSC DYW
Sbjct: 635 KFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 143/334 (42%), Gaps = 52/334 (15%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           A N+F  +      TWNTM+ GY + A  +  A EL+ K+     +PD+ +Y  +     
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP----EPDSVSYNIM----- 142

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
                                        LV    ++G VK A   F  M  +D+ +WN+
Sbjct: 143 -----------------------------LVCYLRSYG-VKAALAFFNKMPVKDIASWNT 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+GFA NG+  +A  LF  M     E +G +  ++ S   E G L      +     VG
Sbjct: 173 LISGFAQNGQMQKAFDLFSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYK---NVG 225

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  +V V  A+L  Y K G +  A+R+F+ M  +N V+W++++ G   N   ++ L++FK
Sbjct: 226 MK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFK 284

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M      P  ++   VL  CS+   +  G     ++  +  +         ++ +  + 
Sbjct: 285 TMIESRVRPNPLSLSSVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 395 GLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
           G +  A++    + MP   VI W  ++     HG
Sbjct: 344 GDLDSAWKLF--LEMPRKDVITWNAMISGYAQHG 375


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/518 (40%), Positives = 320/518 (61%), Gaps = 1/518 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +    I +W ++I GYA++   + A+ ++S+M  +G+KPD      +L+A + + D
Sbjct: 211 VFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDD 270

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G   H   I+ G E    +  SL   YA  G V  A   F+ M   +++ WN++I+G
Sbjct: 271 LEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISG 330

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG   EA+ LF  M S  ++PD  T+ S   A A++G+L L +    YV K     +
Sbjct: 331 YAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSD 390

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + VN +L+D Y+KCG +  A+RVF     ++ V WS +++G  ++G G EA+ L+  M+ 
Sbjct: 391 IFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQ 450

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P +VTF+G+L AC+H G+V EG+  F  MKD + I+P+ EH+ C+VDLLGRAG + 
Sbjct: 451 AGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLG 509

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A  +I  + + P   +W  LL AC I+    + E A + L  L+P ++G YV LSNLYA
Sbjct: 510 EACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYA 569

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
               W  V  VR  M ++ + K  G+S++E+  ++  F +GD+SHP  +EI   L  + +
Sbjct: 570 SSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLER 629

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           +LK  G+VP TE+V  D+  EEKE+ LS+HSE+IA+A+ L++TAPGT +R+ KNLR C +
Sbjct: 630 RLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVN 689

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH AIKLISK+  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 690 CHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 197/385 (51%), Gaps = 22/385 (5%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIF 109
           ++ K  L Q+H   +  G+  N      +L+  +V+ S  +    YA  +F     P++F
Sbjct: 66  STHKRHLDQIHNRLVISGLQHNG-----FLMTKLVNGSSNLGQICYARKLFDEFCYPDVF 120

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
            WN +IR Y+ +      VE+Y  M  +G+ PD  T+P++LKA ++L D  +    H   
Sbjct: 121 MWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQI 180

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I+ GF S VFVQN LV +YA  GH+  A  VF+ +  R +V+W S+I+G+A NGK  EAL
Sbjct: 181 IKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEAL 240

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            +F +M + GV+PD   +VS+  A  ++  L  GR  H +V K+GL D   +  +L  FY
Sbjct: 241 RMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFY 300

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG++  A+  F +M+  N + W+ ++ G A NG  +EA+ LF  M      P  VT  
Sbjct: 301 AKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVR 360

Query: 350 GVLYACSHCG------MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
             + A +  G       +D+  S     K  YG    I     ++D+  + G V+ A   
Sbjct: 361 SAVLASAQVGSLELAQWMDDYVS-----KSNYG--SDIFVNTSLIDMYAKCGSVEFA-RR 412

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGH 428
           + +     + V+W  ++    +HG 
Sbjct: 413 VFDRNSDKDVVMWSAMIMGYGLHGQ 437



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 12/275 (4%)

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           R  +Q H+  + +G +   F+   LV+  +  G +  A K+F+     D+  WN++I  +
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           + N    + + ++R M   GV PDG+T   +  AC EL    L    H  + K G   +V
Sbjct: 130 SRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDV 189

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V N L+  Y+KCG I  A+ VF  +  R  VSW++++ G A NG   EAL +F +M   
Sbjct: 190 FVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNN 249

Query: 340 GFVPGEVTFVGVLYACSHCGMVDE-----GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           G  P  +  V +L A +    +++     GF     ++DE  ++  +  F        + 
Sbjct: 250 GVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF------YAKC 303

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           GLV  A  +   M    N ++W  ++     +GH+
Sbjct: 304 GLVTVAKSFFDQM-KTTNVIMWNAMISGYAKNGHA 337



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYL--IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           + +H F I+ G+  + P L   L   YA   L   ++ A + F  ++  N+  WN MI G
Sbjct: 275 RSIHGFVIKMGLE-DEPALLISLTAFYAKCGL---VTVAKSFFDQMKTTNVIMWNAMISG 330

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           YA++ +   AV L+  M    IKPD+ T    + A +++  + + +       ++ + S 
Sbjct: 331 YAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSD 390

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +FV  SL+ MYA  G V+ A +VF+  S++D+V W+++I G+  +G+  EA+ L+  M  
Sbjct: 391 IFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQ 450

Query: 238 EGVEPDGYTMVSLFSACAELGALALG 263
            GV P+  T + L +AC   G +  G
Sbjct: 451 AGVFPNDVTFIGLLTACNHSGLVKEG 476


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/521 (42%), Positives = 310/521 (59%), Gaps = 40/521 (7%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + + N  +WN MI GY +S     A EL+ +M      P  +T  +       
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------PSRNTSSW------- 342

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N++V  YA  G++  A  +F+ M +RD ++W ++
Sbjct: 343 --------------------------NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A +G+  EAL LF +M  +G   +   +    S+CAE+ AL LG++ H  + K G 
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  NALL  Y KCG I  A  VF ++ +++ VSW+T++ G A +GFGKEAL LF+ 
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFES 496

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++    P +VT VGVL ACSH G+VD+G  YF  M   YGI    +H+ CM+DLLGRAG
Sbjct: 497 MKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG 555

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A   +++M   P+A  W  LLGA  IHG + + E A   + ++EP +SG YVLLSN
Sbjct: 556 RLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSN 615

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           LYA   RW  V+E+R  M  + VKK PG+S VE+ N+   F +GD SHP+ E I+A L E
Sbjct: 616 LYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEE 675

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +LK +G+V  T+ V  D+EEEEKE  L YHSEK+A+AF +++  PG P+RV+KNLRV
Sbjct: 676 LDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRV 735

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK ISK+  R+I+VRD +RFHHF +G CSC DYW
Sbjct: 736 CEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 161/362 (44%), Gaps = 41/362 (11%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F+ + + ++ +WN M+ G+A++     A +++ +M V     +  ++  LL A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSA 193

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              + + R+ +       +  +E  +   N L+  Y     + DA  +F+ M  RD ++W
Sbjct: 194 Y--VQNGRIEDARRLFDSKMDWE--IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR------- 265
           N +I G+A NG  +EA  LF E+    V    +   ++ S   + G L    R       
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE 305

Query: 266 AHTYVWKVGL--------------------SDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            +   W   +                    S N +  N ++  Y++CG I  A+ +F EM
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            +R+ +SW+ ++ G A +G  +EAL LF +M+  G +         L +C+    ++ G 
Sbjct: 366 PQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGK 425

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
               R+  + G          ++ + G+ G +++A++  ++ +   + V W T++     
Sbjct: 426 QLHGRLV-KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED-ITEKDIVSWNTMIAGYAR 483

Query: 426 HG 427
           HG
Sbjct: 484 HG 485



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 142/345 (41%), Gaps = 62/345 (17%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F+ ++  +  T+N MI GY  +     A +++ KM      PD     +       
Sbjct: 79  ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------PDRDLISW------- 125

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N ++  Y   G++  A  +F  M E+D+V+WN++
Sbjct: 126 --------------------------NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAM 159

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++GFA NG   EA  +F +M    +  +  +   L SA  + G +   RR    ++   +
Sbjct: 160 LSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARR----LFDSKM 211

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              +   N L+  Y +   +  A+ +F  M  R+ +SW+ ++ G A NG   EA  LF+E
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE 271

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           + I           G +      GM+DE    F+ M ++  +      +  M+    ++ 
Sbjct: 272 LPIRDVFAWTAMVSGFV----QNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQ 322

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            +++A E    M    N   W T+     + G++    I ++ +L
Sbjct: 323 QIEKARELFDQM-PSRNTSSWNTM-----VTGYAQCGNIDQAKIL 361



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 43/199 (21%)

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           +S +   N  +  Y   G  + A  VF  M  R  V +N++I+G+ SN K + A  +F +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M      PD   ++S                     W           N +L  Y K G 
Sbjct: 117 M------PD-RDLIS---------------------W-----------NVMLSGYVKNGN 137

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + AA+ +F +M +++ VSW+ ++ G A NGF +EA ++F +M     V  E+++ G+L A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193

Query: 355 CSHCGMVDEGFSYFKRMKD 373
               G +++    F    D
Sbjct: 194 YVQNGRIEDARRLFDSKMD 212


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 312/524 (59%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +   N+ TWN M+ G   S     ++  +  M   G++PD +    L + 
Sbjct: 16  LETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRC 75

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L DV  G Q H+  +R+G +  + V +SL HMY   G ++D       +   ++V+ 
Sbjct: 76  CAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSC 135

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ I+G   NG    AL  F  M   GVE +  T VS  ++C++L ALA G++ H    K
Sbjct: 136 NTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIK 195

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+   V V  +L+  YS+CG +  ++RV  E    + V  S ++     +G G++A+ L
Sbjct: 196 TGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGL 255

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FK+M   G  P EVTF+ +LYACSH G+ DEG + F+ M   YG+ P ++H+ C+VDLLG
Sbjct: 256 FKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLG 315

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+G + +A + I +M + P+ VIW+TLL AC       +AE     +++L+P  S  YVL
Sbjct: 316 RSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVL 375

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+ A   RW +V +VR TM ++ V+K PG S VEL  ++ +F  GD SH +  EI   
Sbjct: 376 LSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVEC 435

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+  +++  GY P    VF D+E+EEKE +L++HSEK+AIAF  ++   G P+RV+KN
Sbjct: 436 LEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKN 495

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH+AIKL+SKV  REIVVRD SRFHHFKDG CSC DYW
Sbjct: 496 LRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 2/251 (0%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N L+  Y   G ++ A K+F+ M  R++  WN+++ G  ++G   E+L  F  M  EG++
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD Y + SLF  CA L  +  GR+ H YV + GL  ++ V ++L   Y +CG +   +  
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
            R +   N VS +T + G   NG  + ALE F  M   G     VTFV  + +CS    +
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            +G      +  + G+   +     +V +  R G +  + E +       + V+   ++ 
Sbjct: 184 AQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS-ERVCLEYSGTDLVLCSAMIS 241

Query: 422 ACTIHGHSAIA 432
           A   HGH   A
Sbjct: 242 AYGFHGHGQKA 252


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/521 (40%), Positives = 315/521 (60%), Gaps = 3/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN++I G++   +  L      K  +S +KP+  T   ++ A + 
Sbjct: 93  ALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMS-VKPNEVTILSMISACNG 151

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D   G+  H   I+ G    V V NSL++MY   G +  AC++FE + + + V+WNS+
Sbjct: 152 ALDA--GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I    +NG   E +  F +M   G+E D  T+++L  AC  LG   L    H  ++  G 
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + +  ALLD Y+K G + A+  VF E+   + V+W+ ++ G A +G G+EA++LF+ 
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF  +L ACSH G+V+EG SYF  M + YGI P+++H+ CMVDLLGR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  AYE IQNM M PNA +W  LLGAC +HG+  + +     L+ +EP    +Y++LSN
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSN 449

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+  + W +  +VR  + +  +K+TPG+S +E GN+   FF+GDRSHP+TE+I++ L E
Sbjct: 450 MYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEE 509

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K++  GY  +TE V  D+EEE KED ++ HSEK+AIAF L+ +  G  + + KNLR+
Sbjct: 510 LLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRI 569

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   KLIS +  R I++RD  RFHHF DG CSC DYW
Sbjct: 570 CGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++++  C  +    K +H F I+ G  L    +   LI  +   S  ++ A  +F  + D
Sbjct: 143 LSMISACNGALDAGKYIHGFGIKVGGTLE-VKVANSLI-NMYGKSGDLTSACRLFEAIPD 200

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           PN  +WN++I     +      ++ ++KM   GI+ D  T   LL+A   L   ++ E  
Sbjct: 201 PNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESI 260

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H +    GF + + +  +L+  YA  G +  +  VF  +   D VAW +++ G+A++G  
Sbjct: 261 HGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLG 320

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNA 284
            EA+ LF  MA++G+EPD  T   L SAC+  G +  G+     + +V G+   V+  + 
Sbjct: 321 REAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSC 380

Query: 285 LLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
           ++D   +CG++  A  V + M  + NA  W  L+    V+G    GKE  E    ME
Sbjct: 381 MVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/529 (41%), Positives = 318/529 (60%), Gaps = 18/529 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F      ++FTW  M+ GY ++     A   + +M      P+ +        
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM------PEKNE------- 297

Query: 153 ISKLADVRMGEQTHSVAI-RNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           +S  A +    QT  + I R  FES+    +   N+++  Y   G +  A K F++M +R
Sbjct: 298 VSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+W ++I G+A +G   EAL +F E+  +G   +  T     S CA++ AL LG++ H
Sbjct: 358 DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
               K+G      V NALL  Y KCG I  A   F  + +++ VSW+T++ G A +GFG+
Sbjct: 418 GQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           +AL +F+ M+  G  P E+T VGVL ACSH G++D G  YF  M  +YG++P  +H+ CM
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           +DLLGRAG +++A + I+NM   P A  W  LLGA  IHG++ + E A   + ++EP++S
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 597

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G YVLLSNLYA   RW++  ++R  M    V+K PG+S VE+ N++  F +GD SHP+ E
Sbjct: 598 GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKE 657

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
            I+A L E+  K++ EGYV  T+ V  D+EEEEKE  L YHSEK+A+AF ++    G P+
Sbjct: 658 RIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPI 717

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV+KNLRVC DCH AIK ISK+  R I++RD  RFHHF +G CSC DYW
Sbjct: 718 RVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 121/261 (46%), Gaps = 57/261 (21%)

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           + G++D G  YF  M +EY + P  +H+ CM+DLLGR   +++                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LLGA  IHG++ + E A     ++ P++SG                 + ++R      
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            V+K PG+S  E+ N++  F +G     + E I   L E+  K++               
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMR--------------E 902

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN-LRVCADCHLAIKLISKVYSREIV 595
            EEEKE  L Y SE +A A  ++    G P RV+K  + VC DC  AIK +SK+  R I 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RD    H F +  CSC +YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 53/364 (14%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKA 152
           S  +N    V+DP+I  WN  I  +  + +   A+ +++ M   S +  +     +L  +
Sbjct: 35  SVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS 94

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
              LA             RN F+ +    +F  N ++  Y     + DA ++F+LM E+D
Sbjct: 95  KFNLA-------------RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKD 141

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMV------------------- 248
           +V+WNS+++G+A NG  +EA  +F  M  +  +  +G                       
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD 201

Query: 249 -SLFSACAELGALALGRRAHTYVW---KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             L S    +G     ++     W   K+ + D ++  N ++  Y++ G +  A+R+F E
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW-NTMISGYAQGGGLSQARRLFDE 260

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
              R+  +W+ +V G   NG   EA   F EM        EV++  ++        +D  
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIA 316

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
              F+ M         I  +  M+   G+ G + QA ++  +M+   + V W  ++    
Sbjct: 317 RELFESMP-----CRNISSWNTMITGYGQIGDIAQARKFF-DMMPQRDCVSWAAIIAGYA 370

Query: 425 IHGH 428
             GH
Sbjct: 371 QSGH 374


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/521 (40%), Positives = 319/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  TW TM+ G+ ++     A+E++ +M   GI  D +T+  +L A   
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L+ +  G+Q H+  IR  ++  VFV ++LV MY+    +K A  VF  M+ +++++W ++
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTAL 344

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  NG   EA+ +F EM  +G++PD YT+ S+ S+CA L +L  G + H      GL
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  A R+F EM   + VSW+ LV G A  G  KE ++LF++
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEK 464

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF+GVL ACS  G V++G SYF  M+ ++GI+P  +H+ CM+DL  R+G
Sbjct: 465 MLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSG 524

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +K+A E+I+ M M P+A+ W TLL AC + G   I + A   LL+++P++   YVLL +
Sbjct: 525 KLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCS 584

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A + +W  V ++RR M   +VKK PG S ++  N+V  F   D+SHP ++ I+  L  
Sbjct: 585 MHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEW 644

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + +K   +S+HSEK+AIAF L+      P+R+VKNLRV
Sbjct: 645 LNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRV 704

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+VRD  RFH F DG CSC D+W
Sbjct: 705 CVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 196/392 (50%), Gaps = 36/392 (9%)

Query: 63  HAFSIRHGVPLNNPDLGKY-LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           HA + R    + +P+L  Y  + + ++ +  +S    +F+ +   +I ++N +I G++  
Sbjct: 57  HARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGG 116

Query: 122 ANPLLAVELYSKM--HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +   AV +Y  +    S ++P   T   ++ A S L D  +G+Q H   +R GF +  F
Sbjct: 117 GSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAF 176

Query: 180 VQNSLVHMYAAFGHVKDA------------------------CK-------VFELMSERD 208
           V + LV MYA    V DA                        CK       +FE+M++RD
Sbjct: 177 VGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRD 236

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            + W +++ GF  NG  +EAL +FR M  +G+  D YT  S+ +AC  L AL  G++ H 
Sbjct: 237 SITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           Y+ +    DNV V +AL+D YSKC  I  A+ VFR M  +N +SW+ L+VG   NG  +E
Sbjct: 297 YIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEE 356

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           A+ +F EM+  G  P + T   V+ +C++   ++EG + F  +    G+M  I     +V
Sbjct: 357 AVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEG-AQFHCLALVSGLMHYITVSNALV 415

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            L G+ G ++ A+     M    + V W  L+
Sbjct: 416 TLYGKCGSIEDAHRLFDEMSF-HDQVSWTALV 446


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 319/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +W +MI GYA++     A+ L+ +M   G +P+  T   L+K    
Sbjct: 128 ARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGY 187

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +A    G Q H+   + G  S VFV +SLV MYA  G++ +A  VF+ +  ++ V+WN++
Sbjct: 188 MASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNAL 247

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G+  EAL LF  M  EG  P  +T  +L S+C+ +G L  G+  H ++ K   
Sbjct: 248 IAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQ 307

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                V N LL  Y+K G I  A++VF ++ K + VS +++++G A +G GKEA + F E
Sbjct: 308 KLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDE 367

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P ++TF+ VL ACSH  ++DEG  YF  M+ +Y I PK+ H+  +VDLLGRAG
Sbjct: 368 MIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAG 426

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ QA  +I+ M + P   IW  LLGA  +H ++ +   A   + +L+P + G + LL+N
Sbjct: 427 LLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLAN 486

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +V +VR+ M    VKK P  S VE+ N V  F   D +HPQ E+IH M  +
Sbjct: 487 IYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEK 546

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + +K+K  GYVP T +V   ++++EKE  L YHSEK+A++F L+NT PG+ +R++KN+RV
Sbjct: 547 LNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRV 606

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK +S V  REI+VRD +RFHHF DG CSC DYW
Sbjct: 607 CGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 175/337 (51%), Gaps = 33/337 (9%)

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           S N    + +   +    ++PD   Y  LLK  ++L  ++ G+  H   + + F+  + +
Sbjct: 52  SLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVI 111

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
           QNSL+ MYA  G ++ A ++F+ M  RD+V+W S+I G+A N + ++AL LF  M S+G 
Sbjct: 112 QNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGA 171

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           EP+ +T+ SL   C  + +   GR+ H   WK G   NV V ++L+D Y++CG +  A  
Sbjct: 172 EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAML 231

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF ++  +N VSW+ L+ G A  G G+EAL LF  M+  G+ P E T+  +L +CS  G 
Sbjct: 232 VFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGC 291

Query: 361 VDEG-------------------------FSYFKRMKDE---YGIMPKIEHFGCMVDLLG 392
           +++G                         ++    ++D    +  + K++   C   L+G
Sbjct: 292 LEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIG 351

Query: 393 RA--GLVKQAYEYIQNML---MPPNAVIWRTLLGACT 424
            A  GL K+A +    M+   + PN + + ++L AC+
Sbjct: 352 YAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACS 388


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 315/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  + TWN MI G  +       + L+ +MH  G  PD +T   +    + 
Sbjct: 42  ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 101

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  V +G+Q H   I+ G E  + V +SL HMY   G ++D   V   M  R+LVAWN++
Sbjct: 102 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 161

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P   L L++ M   G  P+  T V++ S+C++L     G++ H    K+G 
Sbjct: 162 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 221

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V V ++L+  YSKCG +  A + F E    + V WS+++     +G G EA+ELF  
Sbjct: 222 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNT 281

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           M E       EV F+ +LYACSH G+ D+G   F  M ++YG  P ++H+ C+VDLLGRA
Sbjct: 282 MAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRA 341

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + QA   I++M +  + VIW+TLL AC IH ++ +A+     +LQ++P  S  YVLL+
Sbjct: 342 GCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLA 401

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N++A  +RW +V EVR++M  + VKK  G S  E    V +F MGDRS  +++EI++ L 
Sbjct: 402 NVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLK 461

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T ++KL+GY P T +V  D++EEEKE  L  HSEK+A+AF L+    G P+R++KNLR
Sbjct: 462 ELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 521

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH+A K IS + +REI +RD SRFHHF +G CSC DYW
Sbjct: 522 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 2/277 (0%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N L++ Y   G + +A KVF+ M +R L  WN++I G        E L+LFREM   G  
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 86

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD YT+ S+FS  A L ++++G++ H Y  K GL  ++ VN++L   Y + G +   + V
Sbjct: 87  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 146

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
            R M  RN V+W+TL++G A NG  +  L L+K M+I G  P ++TFV VL +CS   + 
Sbjct: 147 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 206

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            +G         + G    +     ++ +  + G +  A +         + V+W +++ 
Sbjct: 207 GQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSER-EDEDEVMWSSMIS 264

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           A   HG    A    +T+ +       +   L+ LYA
Sbjct: 265 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 301


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 313/527 (59%), Gaps = 3/527 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLK 151
           +  A  IF+ + +  + +W+ MI  YA       A+ L+ +M   G ++P+  T+  +  
Sbjct: 36  LDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFN 95

Query: 152 AISKLADVRMGEQTHSVAIRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           A   + D+  G + H++A+ +G    S   ++N+L++MY   G +++A KVF+ M   D 
Sbjct: 96  ACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDA 155

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
            +W S+I     N +  EAL LF  M  EG+ P   T+ S+ +ACA  GAL +G++ H+ 
Sbjct: 156 FSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSR 215

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +   G   +V    ALLD Y+KCG +  + +VF  M  RN+VSW+ ++  LA +G G EA
Sbjct: 216 LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 275

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LELFKEM + G V    TF+ VL ACSH G++ E   +F  M ++Y I P   H+   +D
Sbjct: 276 LELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALD 335

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            +GRAG ++ A E I +M   P  + W+TLL AC IH  +  A      L +L P+ S  
Sbjct: 336 TIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMA 395

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           Y LL N+YA   R+ +   VR+ M    +KK PG S +E+ N+V EF  GDR+HP  +EI
Sbjct: 396 YTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEI 455

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
              L ++  +++  GYVP T++V   + EEEKE  +  HSEK+AIAF L+ T PGTP+ +
Sbjct: 456 LLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLI 515

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLRVC+DCH A K+I+K+  R IVVRD  RFHHF+DG CSC+DYW
Sbjct: 516 VKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 133/270 (49%), Gaps = 5/270 (1%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + HS     GF      QN LV MYA  G + +A  +F  + ER +V+W+++I  +A 
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 222 NGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG--LSDN 278
           +G+  EAL LF  M ++G VEP+  T   +F+AC  +  L  GR  H      G   S N
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             + NALL+ Y +CG +  A++VF  M   +A SW++++     N    EALELF  M +
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNL 183

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P  VT   VL AC+  G +  G     R+ D  G    +     ++D+  + G ++
Sbjct: 184 EGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            + +    M    N+V W  ++ A   HG 
Sbjct: 243 CSSKVFTAM-ETRNSVSWTAMIAALAQHGQ 271


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 315/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  + TWN MI G  +       + L+ +MH  G  PD +T   +    + 
Sbjct: 44  ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 103

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  V +G+Q H   I+ G E  + V +SL HMY   G ++D   V   M  R+LVAWN++
Sbjct: 104 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 163

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG P   L L++ M   G  P+  T V++ S+C++L     G++ H    K+G 
Sbjct: 164 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 223

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S  V V ++L+  YSKCG +  A + F E    + V WS+++     +G G EA+ELF  
Sbjct: 224 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNT 283

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           M E       EV F+ +LYACSH G+ D+G   F  M ++YG  P ++H+ C+VDLLGRA
Sbjct: 284 MAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRA 343

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + QA   I++M +  + VIW+TLL AC IH ++ +A+     +LQ++P  S  YVLL+
Sbjct: 344 GCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLA 403

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N++A  +RW +V EVR++M  + VKK  G S  E    V +F MGDRS  +++EI++ L 
Sbjct: 404 NVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLK 463

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+T ++KL+GY P T +V  D++EEEKE  L  HSEK+A+AF L+    G P+R++KNLR
Sbjct: 464 ELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 523

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC+DCH+A K IS + +REI +RD SRFHHF +G CSC DYW
Sbjct: 524 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 2/277 (0%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N L++ Y   G + +A KVF+ M +R L  WN++I G        E L+LFREM   G  
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 88

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD YT+ S+FS  A L ++++G++ H Y  K GL  ++ VN++L   Y + G +   + V
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
            R M  RN V+W+TL++G A NG  +  L L+K M+I G  P ++TFV VL +CS   + 
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            +G         + G    +     ++ +  + G +  A +         + V+W +++ 
Sbjct: 209 GQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSER-EDEDEVMWSSMIS 266

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           A   HG    A    +T+ +       +   L+ LYA
Sbjct: 267 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 303


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/521 (42%), Positives = 309/521 (59%), Gaps = 40/521 (7%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + + N  +WN MI GY +S     A EL+ +M      P  +T  +       
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------PSRNTSSW------- 342

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N++V  YA  G++  A  +F+ M +RD ++W ++
Sbjct: 343 --------------------------NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A +G+  EAL LF +M  +G   +   +    S+CAE+ AL LG++ H  + K G 
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  NALL  Y KCG I  A  VF ++ +++ VSW+T++ G A +GFGKEAL LF+ 
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFES 496

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++    P +VT VGVL ACSH G VD+G  YF  M   YGI    +H+ CM+DLLGRAG
Sbjct: 497 MKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG 555

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A   +++M   P+A  W  LLGA  IHG + + E A   + ++EP +SG YVLLSN
Sbjct: 556 RLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSN 615

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           LYA   RW  V+E+R  M  + VKK PG+S VE+ N+   F +GD SHP+ E I+A L E
Sbjct: 616 LYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEE 675

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  +LK +G+V  T+ V  D+EEEEKE  L YHSEK+A+AF +++  PG P+RV+KNLRV
Sbjct: 676 LDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRV 735

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIK ISK+  R+I+VRD +RFHHF +G CSC DYW
Sbjct: 736 CEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 161/362 (44%), Gaps = 41/362 (11%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F+ + + ++ +WN M+ G+A++     A +++ +M V     +  ++  LL A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSA 193

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              + + R+ +       +  +E  +   N L+  Y     + DA  +F+ M  RD ++W
Sbjct: 194 Y--VQNGRIEDARRLFDSKMDWE--IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR------- 265
           N +I G+A NG  +EA  LF E+    V    +   ++ S   + G L    R       
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE 305

Query: 266 AHTYVWKVGL--------------------SDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            +   W   +                    S N +  N ++  Y++CG I  A+ +F EM
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            +R+ +SW+ ++ G A +G  +EAL LF +M+  G +         L +C+    ++ G 
Sbjct: 366 PQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGK 425

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
               R+  + G          ++ + G+ G +++A++  ++ +   + V W T++     
Sbjct: 426 QLHGRLV-KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED-ITEKDIVSWNTMIAGYAR 483

Query: 426 HG 427
           HG
Sbjct: 484 HG 485



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 142/345 (41%), Gaps = 62/345 (17%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F+ ++  +  T+N MI GY  +     A +++ KM      PD     +       
Sbjct: 79  ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------PDRDLISW------- 125

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N ++  Y   G++  A  +F  M E+D+V+WN++
Sbjct: 126 --------------------------NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAM 159

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++GFA NG   EA  +F +M    +  +  +   L SA  + G +   RR    ++   +
Sbjct: 160 LSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARR----LFDSKM 211

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              +   N L+  Y +   +  A+ +F  M  R+ +SW+ ++ G A NG   EA  LF+E
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE 271

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           + I           G +      GM+DE    F+ M ++  +      +  M+    ++ 
Sbjct: 272 LPIRDVFAWTAMVSGFV----QNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQ 322

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            +++A E    M    N   W T+     + G++    I ++ +L
Sbjct: 323 QIEKARELFDQM-PSRNTSSWNTM-----VTGYAQCGNIDQAKIL 361



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 43/199 (21%)

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           +S +   N  +  Y   G  + A  VF  M  R  V +N++I+G+ SN K + A  +F +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M      PD   ++S                     W           N +L  Y K G 
Sbjct: 117 M------PD-RDLIS---------------------W-----------NVMLSGYVKNGN 137

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + AA+ +F +M +++ VSW+ ++ G A NGF +EA ++F +M     V  E+++ G+L A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193

Query: 355 CSHCGMVDEGFSYFKRMKD 373
               G +++    F    D
Sbjct: 194 YVQNGRIEDARRLFDSKMD 212


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 311/522 (59%), Gaps = 6/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           A  +F  + + N+ TW T++   A +      A+     M   G+ P+ +T+  +L A  
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG 193

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
               +      H+  ++ G +S VFV++SL+  Y   G +    +VF+ M  RDLV WNS
Sbjct: 194 TPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNS 250

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I GFA +G    A+ LF  M   G   +  T+ S+  AC  +  L  GR+ H +V K  
Sbjct: 251 IIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK-- 308

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              ++ ++NALLD Y KCG +  A+ +F  M +R+ +SWST++ GLA NG   EAL +F 
Sbjct: 309 YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFD 368

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  G  P  +T VGVL+ACSH G+V++G+ YF+ MK  +GI P+ EH  CMVDLLGRA
Sbjct: 369 LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRA 428

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A E+I++M + P+AVIWRTLLGAC +H    +A  A   +L+LEP   G  VLLS
Sbjct: 429 GKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLS 488

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N YA  ++W + ++  + M    +KK PG S +EL   V  F  GD SHP ++ I   L 
Sbjct: 489 NTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELN 548

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            +  ++   GYVP+TE V  D+  E+KED L YHSEK+AIAF  ++   G P+R++KNLR
Sbjct: 549 RLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLR 608

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +C DCH   KL+SK   R I++RD  RFHHF+DG CSC DYW
Sbjct: 609 ICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 136/258 (52%), Gaps = 12/258 (4%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA-SNGKPNEALTLFREMA 236
           +FV NSLV MYA FG + DA ++F+ M ER++V W +V+   A ++G+  EAL     M 
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +GV P+ YT  S+  AC   G LA     H    KVGL  +V V ++L+D Y K G + 
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLD 231

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
             +RVF EM  R+ V W++++ G A +G G  A+ELF  M+  GF   + T   VL AC+
Sbjct: 232 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291

Query: 357 HCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
              M++ G       +K E  +   I H   ++D+  + G ++ A        MP   VI
Sbjct: 292 GMVMLEAGRQVHAHVLKYERDL---ILH-NALLDMYCKCGSLEDAEALFHR--MPQRDVI 345

Query: 416 -WRTLLGACTIHGHSAIA 432
            W T++     +G SA A
Sbjct: 346 SWSTMISGLAQNGKSAEA 363



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 25/162 (15%)

Query: 225 PNEALTLFREMASEGVEP----------------DGYTMVSLFSACAELGALALGRRAHT 268
           P+ +L +F  +  EG  P                D  ++  L   C   G    GR  H 
Sbjct: 37  PHPSLAIFSRLCVEGPFPAALALLPDLAAAGLRADPVSLTRLVKLCVRHGTAGDGRLIHR 96

Query: 269 YV--------WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           +V        +  G    + V+N+L+  Y+K G++  A R+F  M +RN V+W+T+V  L
Sbjct: 97  HVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAAL 156

Query: 321 A-VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           A  +G  +EAL     M   G  P   TF  VL AC   G++
Sbjct: 157 ANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL 198


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 312/524 (59%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +   N+ TWN M+ G   S     ++  +  M   G++PD +    L + 
Sbjct: 124 LETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRC 183

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L DV  G Q H+  +R+G +  + V +SL HMY   G ++D       +   ++V+ 
Sbjct: 184 CAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSC 243

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ I+G   NG    AL  F  M   GVE +  T VS  ++C++L ALA G++ H    K
Sbjct: 244 NTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIK 303

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+   V V  +L+  YS+CG +  ++RV  E    + V  S ++     +G G++A+ L
Sbjct: 304 TGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGL 363

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FK+M   G  P EVTF+ +LYACSH G+ DEG + F+ M   YG+ P ++H+ C+VDLLG
Sbjct: 364 FKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLG 423

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+G + +A + I +M + P+ VIW+TLL AC       +AE     +++L+P  S  YVL
Sbjct: 424 RSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVL 483

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+ A   RW +V +VR TM ++ V+K PG S VEL  ++ +F  GD SH +  EI   
Sbjct: 484 LSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVEC 543

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+  +++  GY P    VF D+E+EEKE +L++HSEK+AIAF  ++   G P+RV+KN
Sbjct: 544 LEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKN 603

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH+AIKL+SKV  REIVVRD SRFHHFKDG CSC DYW
Sbjct: 604 LRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 15/318 (4%)

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL- 177
           A  A PLL  +L++    SG   D  T   LL A + L D            R  FE + 
Sbjct: 54  ACQALPLLR-QLHAFAATSGAAADRFTANHLLLAYADLGDFPTA--------RGLFERIP 104

Query: 178 ---VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
              V   N L+  Y   G ++ A K+F+ M  R++  WN+++ G  ++G   E+L  F  
Sbjct: 105 KRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFA 164

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  EG++PD Y + SLF  CA L  +  GR+ H YV + GL  ++ V ++L   Y +CG 
Sbjct: 165 MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGF 224

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +   +   R +   N VS +T + G   NG  + ALE F  M   G     VTFV  + +
Sbjct: 225 LRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTS 284

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CS    + +G      +  + G+   +     +V +  R G +  + E +       + V
Sbjct: 285 CSDLAALAQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS-ERVCLEYSGTDLV 342

Query: 415 IWRTLLGACTIHGHSAIA 432
           +   ++ A   HGH   A
Sbjct: 343 LCSAMISAYGFHGHGQKA 360


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 334/575 (58%), Gaps = 7/575 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L+ C  S+     +Q+HA  +  G  L+   L   L+    S    +S A  +F  + 
Sbjct: 73  TILRSCVLSRAVRPGRQLHARLLVSGTGLDAV-LATRLVDLYASCGH-VSLARRVFDEMP 130

Query: 105 DP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMG 162
           +  N+F WN +IR YA       A+ELY  M   G +KPD  TYP +LKA + L D+  G
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            + H   +R  + + VFV   L+ MYA  G + +A  VF   + RD   WNS+I     N
Sbjct: 191 REVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQN 250

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+P EALTL R MA+EG+ P   T+VS  SA A   AL  GR  H Y W+ G      + 
Sbjct: 251 GRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLK 310

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            +LLD Y+K G ++ A  +F ++  R  +SW+ ++ G  ++G    A ELF  M     V
Sbjct: 311 TSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQV 370

Query: 343 -PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +TFVGVL AC+H GMV E    F  M   Y I P ++H+ C+VD+LG +G  K+A 
Sbjct: 371 MPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEAS 430

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           + I+ ML+ P++ IW  LL  C IH +  +AE+A   L++LEP+ +G+YVLLSN+YA   
Sbjct: 431 DVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESG 490

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           +W     VR+ M    +KK    S +EL  +   F +GD SHP++++I+  L  +   + 
Sbjct: 491 KWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLIS 550

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GYVP T  VF ++E++EK + +  HSE++AIAF L++T P T + V KNLRVC DCH+
Sbjct: 551 QTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHV 610

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            IKLIS++  REI++RD +R+HHF +G CSC+D+W
Sbjct: 611 VIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 7/293 (2%)

Query: 141 PDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           P  H+ Y  +L++      VR G Q H+  + +G      +   LV +YA+ GHV  A +
Sbjct: 65  PYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARR 124

Query: 200 VF-ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAEL 257
           VF E+ ++ ++  WN +I  +A +G    A+ L+R M + G ++PD +T   +  ACA L
Sbjct: 125 VFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAAL 184

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
             L+ GR  H  V +   + +V V   L+D Y+KCG +  A  VF +   R+A  W++++
Sbjct: 185 LDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMI 244

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYG 376
                NG   EAL L + M   G  P   T V  + A +    +  G   +    +  +G
Sbjct: 245 AACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFG 304

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
              K++    ++D+  ++G V  A+   + +L     + W  ++    +HGH+
Sbjct: 305 SQDKLK--TSLLDMYAKSGWVMVAHVLFEQLLH-RELISWNAMICGFGMHGHA 354


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 318/523 (60%), Gaps = 3/523 (0%)

Query: 96  AHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           A  +F  +  P   I +W  ++  YA++  P+ A+E++S+M    +KPD      +L A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAF 232

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L D+  G   H+  ++ G E+   +  SL  MYA  G V  A  +F+ M   +L+ WN
Sbjct: 233 TCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I+G+A NG   +A+ LF EM ++ V PD  ++ S  SACA++G+L   R    YV + 
Sbjct: 293 AMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS 352

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
              D+V +++AL+D ++KCG +  A+ VF     R+ V WS ++VG  ++G  +EA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY 412

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           + ME  G  P +VTF+G+L AC+H GMV EG+ +F RM D + I P+ +H+ C++DLLGR
Sbjct: 413 RAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGR 471

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + QAYE I+ M + P   +W  LL AC  H H  + + A   L  ++P ++G YV L
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQL 531

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA  + W  V EVR  M ++ + K  G S VE+  R+  F +GD+SHP+ EEI   +
Sbjct: 532 SNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQV 591

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             I  +LK  G+V   +    D+ +EE E+ L  HSE+I IA+ L++T  GT +R+ KNL
Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNL 651

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R C +CH A KLISK+  REIVVRD +RFHHFKDG CSC DYW
Sbjct: 652 RACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 217/413 (52%), Gaps = 17/413 (4%)

Query: 54  SSKHK--LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW 111
           SS HK  L+Q+HA  +  G+  +   + K LI+A  S    +++A  +F  +  P +F W
Sbjct: 30  SSTHKAQLRQIHARLLVLGLQFSGFLITK-LIHASSSYG-DITFARQVFDDLPRPQVFPW 87

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +IRGY+ + +   A+ +YSKM ++ + PD+ T+P LLKA   L+ ++MG   H+   R
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR 147

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEAL 229
            GFE+ VFVQN L+ +YA    +  A  VFE   + ER +V+W ++++ +A NG+P EAL
Sbjct: 148 LGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEAL 207

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            +F +M    V+PD   +VS+ +A   L  L  GR  H  V K+GL    ++  +L   Y
Sbjct: 208 EIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMY 267

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG +  A+ +F +M+  N + W+ ++ G A NGF K+A++LF EM      P  ++  
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISIT 327

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEY----GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
             + AC+  G +++      R  DEY         +     ++D+  + G V+ A     
Sbjct: 328 SAISACAQVGSLEQA-----RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFD 382

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
             L   + V+W  ++    +HG +  A I+    ++ +  H  D   L  L A
Sbjct: 383 RTL-DRDVVVWSAMIVGYGLHGQAREA-ISLYRAMERDGVHPNDVTFLGLLIA 433



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           SGI  D+  Y  L+ + +  A +R   Q H+  +  G +   F+   L+H  +++G +  
Sbjct: 16  SGIHSDSF-YASLIDSSTHKAQLR---QIHARLLVLGLQFSGFLITKLIHASSSYGDITF 71

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A +VF+ +    +  WN++I G++ N    +AL ++ +M    V PD +T   L  AC  
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWS 314
           L  L +GR  H  V+++G   +V V N L+  Y+KC  +  A+ VF    + +R  VSW+
Sbjct: 132 LSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWT 191

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            +V   A NG   EALE+F +M      P  V  V VL A +    +++G S    +  +
Sbjct: 192 AIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVM-K 250

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G+  + +    +  +  + G V  A + + + +  PN ++W  ++     +G
Sbjct: 251 MGLETEPDLLISLNTMYAKCGQVATA-KILFDKMKSPNLILWNAMISGYAKNG 302


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 313/521 (60%), Gaps = 4/521 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLA 157
           IF  +   ++  W  MI  Y ++  P  A+ L+ KM    G+  D+     +  A+ +L 
Sbjct: 14  IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLG 73

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           DV+     H  A R      + V NS++ M+   G+ + A  VF++M ERD+++WNS+++
Sbjct: 74  DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLS 133

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+  NG+  EAL LF EM     +P   T + + SACA LG   LGR+ H ++    +  
Sbjct: 134 GYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEI 193

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N++NAL+D Y+KCG +  A  +F  +   +RNA SW+ L+ G  ++G GKEALELF  
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSR 253

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+  G  P   TF  +L ACSH G++DEG   F  MK    +  + +H  C+VD+LGRAG
Sbjct: 254 MQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLEDKHHACVVDMLGRAG 312

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+++A++ I+ M  PP+  +W  LL AC IHG+  + + A S LLQLEP H+G YVL+SN
Sbjct: 313 LLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSN 372

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W  V ++R+ M  + +KK    S++E G  +  F   D+ +P   E++  +  
Sbjct: 373 IYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMES 432

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  ++K+ GYVP       D+EEE+KE  L+YHSEK+A+AF ++   PG  +RV KNLRV
Sbjct: 433 LAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRV 492

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K IS +Y R+I+VRD +RFHHF+ G CSC+DYW
Sbjct: 493 CNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 17/270 (6%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGY 245
           MYA  G   D  K+F+ MS +DLV W ++I  +    KP EAL LF++M   EG+  D  
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            +VS+ SA  +LG +      H Y ++  L + + V N++L  ++KCG    A+ VF  M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            +R+ +SW++++ G   NG   EAL LF EM      P  VT + ++ AC++      GF
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYL-----GF 175

Query: 366 SYFKRMKDEYGIMPKIE----HFGCMVDLLGRAGLVKQAYEYIQNMLMPP---NAVIWRT 418
            +  R   ++ +  ++E        ++D+  + G +++A +      +PP   NA  W  
Sbjct: 176 RHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNG--IPPTERNAGSWNV 233

Query: 419 LLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           L+    +HGH   A+   +R     +EP H
Sbjct: 234 LISGYGMHGHGKEALELFSRMQEEGVEPNH 263


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 318/524 (60%), Gaps = 20/524 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   ++ +W  MI G   S       + +++M    + P+  T   L+  
Sbjct: 242 LASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITE 301

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              +  + +G+  H+  +RNGF   + +  +L+ MY   G V  A  +F  + ++D+  W
Sbjct: 302 CGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIW 361

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           + +I+ +A     ++   LF EM +  V+P+  TMVSL S CAE GAL LG+  H Y+ +
Sbjct: 362 SVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINR 421

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            GL  +V +  AL++ Y+KCG +  A+ +F E  +R+   W+T++ G +++G GKEALEL
Sbjct: 422 HGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALEL 481

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F EME  G  P ++TFV + +ACSH G+                    +EH+GC+VDLLG
Sbjct: 482 FSEMESHGVEPNDITFVSIFHACSHSGL--------------------MEHYGCLVDLLG 521

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A+  I+NM M PN +IW  LL AC +H + A+ E+A   +L+L+P++ G  VL
Sbjct: 522 RAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVL 581

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
            SN+YA  +RW +V  VR  M    +KK PG S +E+   V  F  GD++  QT +++ M
Sbjct: 582 KSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEM 641

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           + E+  KL+  GY P T  V  +I+EEEKE ALSYHSEK+A AF L++TAPGTP+R+VKN
Sbjct: 642 VTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKN 701

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH A KL+SK+Y R I+VRDR+RFHHF +G+CSC  YW
Sbjct: 702 LRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 161/341 (47%), Gaps = 15/341 (4%)

Query: 95  YAHNIFSHVQDPNIF----------TWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DT 143
           +AH I +   +P+ F           +N +I  Y  +  P  +   Y  M  +     D 
Sbjct: 29  HAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDN 88

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
              P LLKA ++ +   +G + H  A +NGF S VFV N+L++MY   G +  A  VF+ 
Sbjct: 89  FILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQ 148

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M ERD+V+W +++  +  +    EAL L REM   GV+  G  ++SL +    L  +  G
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSG 208

Query: 264 RRAHTYVWK-VGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           R  H Y+ + VG     V++  AL+D Y K G + +AQR+F  + KR+ VSW+ ++ G  
Sbjct: 209 RAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCI 268

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +    E  + F  M      P E+T + ++  C   G +D G  +F       G    +
Sbjct: 269 RSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG-KWFHAYLLRNGFGMSL 327

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                ++D+ G+ G V  A   + N +   +  IW  L+ A
Sbjct: 328 ALVTALIDMYGKCGQVGYA-RALFNGVKKKDVKIWSVLISA 367



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 185/391 (47%), Gaps = 20/391 (5%)

Query: 47  TLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           +LL+ CA  SS    +++H F+ ++G   +      ++  A++++      +  A  +F 
Sbjct: 93  SLLKACAQASSGDLGRELHGFAQKNGFASD-----VFVCNALMNMYEKCGCLVSARLVFD 147

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            + + ++ +W TM+  Y  S     A+ L  +M   G+K        L+     L D++ 
Sbjct: 148 QMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKS 207

Query: 162 GEQTHSVAIRN-GFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           G   H   +RN G E + V +  +L+ MY   G +  A ++F+ +S+R +V+W  +I G 
Sbjct: 208 GRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGC 267

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             + + +E    F  M  E + P+  T++SL + C  +G L LG+  H Y+ + G   ++
Sbjct: 268 IRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSL 327

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +  AL+D Y KCG +  A+ +F  ++K++   WS L+   A      +   LF EM   
Sbjct: 328 ALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNN 387

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              P  VT V +L  C+  G +D G    +Y  R   E  ++ +      ++++  + G 
Sbjct: 388 DVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETA----LINMYAKCGD 443

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           V  A     N  M  +  +W T++   ++HG
Sbjct: 444 VTIARSLF-NEAMQRDIRMWNTMMAGFSMHG 473


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 321/523 (61%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W  MI  Y++      A+ L+ +M  S  +P+  T+  +L +   
Sbjct: 144 AREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 203

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q HS+AI+  +ES +FV +SL+ MYA  G + DA  VF  + ERD+VA  ++
Sbjct: 204 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 263

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR++  EG+  +  T  S+ +A + L AL  G++ H++V + G 
Sbjct: 264 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 323

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG +  A+R+F  M +R  +SW+ ++VG + +G  +E LELFK 
Sbjct: 324 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 383

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGR 393
           M E     P  +T++ VL  CSH  + D G   F  M + + GI P I H+GC+VDLLGR
Sbjct: 384 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 443

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG V++A+++I+ M   P A IW +LLG+C +H    I  I    LL+LEP+++G+YV+L
Sbjct: 444 AGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVIL 503

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   +W +++ +R  M ++ V K PG S VEL   V  F   D +HP+ EE+   +
Sbjct: 504 SNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKV 563

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E++ K K +GYVP    V  D++EE+KE  L  HSEK+A+AF L+ T  GT +RV+KNL
Sbjct: 564 KELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNL 623

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K +S++Y+R +++RD++RFH+   G CSC DYW
Sbjct: 624 RICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           +M + G +     Y  +L        +R G++ H+  I+  +   V+++  L+ +Y    
Sbjct: 80  QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 139

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            + DA ++F+ M ++++V+W ++I+ ++  G   EAL LF EM     EP+ +T  ++ +
Sbjct: 140 CLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 199

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           +C        GR+ H+   K     ++ V ++LLD Y+K G I  A  VF  + +R+ V+
Sbjct: 200 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 259

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
            + ++ G A  G  +EAL+LF++++I G     VT+  VL A S    ++ G      + 
Sbjct: 260 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVL 319

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
              G    +     ++D+  + G V  A     +  MP    I W  +L   + HG
Sbjct: 320 RS-GQYSYVVLLNSLIDMYSKCGNVCYARRIFDS--MPERTCISWNAMLVGYSKHG 372



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +T L   A+  H  KQVH+  +R G    V L N  +  Y      S    + YA  IF 
Sbjct: 299 LTALSGLAALNHG-KQVHSHVLRSGQYSYVVLLNSLIDMY------SKCGNVCYARRIFD 351

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAIS--KLAD 158
            + +    +WN M+ GY++       +EL+  M     +KPD+ TY  +L   S  +L D
Sbjct: 352 SMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLED 411

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           + +    + V  ++G E  +     +V +    G V++A
Sbjct: 412 MGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 450


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 357/628 (56%), Gaps = 41/628 (6%)

Query: 26   LYHSTPASQENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLI 83
            LYH   +  E+ I        TLL +CA+ ++  + +Q+HA  IR  +  N   + +  +
Sbjct: 465  LYHDMQS--EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN--IIVETEL 520

Query: 84   YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
              + S    ++YA  IF+ + + N ++WN+MI GY ++     A+ L+ +M ++GIKPD 
Sbjct: 521  VHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 144  HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-------------- 189
             +   +L +   L+D + G + H+  +RN  E    +Q  LV MYA              
Sbjct: 581  FSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ 640

Query: 190  --------------AF---GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
                          AF   G   DA  +F+ M +R+   WNS++ G+A+ G   E+   F
Sbjct: 641  TIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHF 700

Query: 233  REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSK 291
             EM    +E D  TMV++ + C+ L AL  G + H+ + K G  + +V +  AL+D YSK
Sbjct: 701  LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK 760

Query: 292  CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            CG I  A+ VF  M  +N VSW+ ++ G + +G  KEAL L++EM   G  P EVTF+ +
Sbjct: 761  CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 820

Query: 352  LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
            L ACSH G+V+EG   F  M+++Y I  K EH+ CMVDLLGRAG ++ A E+++ M + P
Sbjct: 821  LSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEP 880

Query: 412  NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
                W  LLGAC +H    +  +A   L +L+P++ G YV++SN+YA   RW  V+++R+
Sbjct: 881  EVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQ 940

Query: 472  TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
             M  + VKK PG S +E+ + +  F  G ++HP+TEEI+  L  +T + K  GY+P T  
Sbjct: 941  MMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSF 1000

Query: 532  VFADIEEEEKEDALSY---HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
            +  ++++ ++E+   Y   HSE++A++  L++    + +RV KNLR+C DCH A K ISK
Sbjct: 1001 ILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISK 1060

Query: 589  VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +  R I+ RD +RFHHF++G CSC DYW
Sbjct: 1061 ITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 198/414 (47%), Gaps = 28/414 (6%)

Query: 28  HSTPASQENPI--TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD---LGKYL 82
           H+ PAS  NP+  +S+++ CI      ++S  + K +H   I +G    NPD   + K L
Sbjct: 62  HTKPASDVNPLPYSSLIQDCID-----SNSFQRGKSIHTQMISNGY---NPDAYLMTKIL 113

Query: 83  -IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
            +YA       + YA  +F  + + N+  WNTMI  YA   + +  + LY +M  SG   
Sbjct: 114 MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS 173

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D  T+P ++KA   + D+    Q  S  ++ G    +FV  +LV  YA FG + DA    
Sbjct: 174 DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSL 233

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + +    +V WN+VI G+       EA  +F  M   GV PD +T  S    C  L +  
Sbjct: 234 DEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRD 293

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G++ H+ +   G   +  V NAL+D Y+KC    +  +VF EM +RN V+W++++   A
Sbjct: 294 GGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 353

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG----- 376
             G   +AL LF  M+  G+         +L A +  G+ D G     + ++ +G     
Sbjct: 354 QFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA--GLADIG-----KGRELHGHLVRN 406

Query: 377 -IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            +   I     +VD+  + G+V++A++  ++ L+  N V +  LL      G +
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRS-LLERNEVSYNALLAGYVQEGKA 459



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 214/440 (48%), Gaps = 23/440 (5%)

Query: 1   MTSW----LMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSK 56
           +T+W    L +++   Y E+  L  R++    S   S +    SV++ CI +  +     
Sbjct: 140 LTAWNTMILAYARVDDYMEVLRLYGRMRG---SGNFSDKFTFPSVIKACIAMEDMGG--- 193

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
             ++Q+ +  ++ G+  N   +G  L+       + M  A      ++  ++ TWN +I 
Sbjct: 194 --VRQLQSSVVKAGLNCN-LFVGGALVDGYARFGW-MDDAVTSLDEIEGTSVVTWNAVIA 249

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY +  +   A  ++ +M   G+ PD  T+   L+    L     G+Q HS  I  GF+ 
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             FV N+L+ MYA     +   KVF+ M ER+ V WNS+I+  A  G  N+AL LF  M 
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G + + + + S+  A A L  +  GR  H ++ +  L+ ++ + +AL+D YSKCG++ 
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYAC 355
            A +VFR + +RN VS++ L+ G    G  +EALEL+ +M+   G  P + TF  +L  C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 356 SHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
           ++    ++G    ++  R      I+ + E    +V +    G +  A E I N +   N
Sbjct: 490 ANQRNDNQGRQIHAHLIRANITKNIIVETE----LVHMYSECGRLNYAKE-IFNRMAERN 544

Query: 413 AVIWRTLLGACTIHGHSAIA 432
           A  W +++     +G +  A
Sbjct: 545 AYSWNSMIEGYQQNGETQEA 564



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 171/371 (46%), Gaps = 33/371 (8%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAIS 154
           AH +F  + + N  ++N ++ GY +      A+ELY  M    GI+PD  T+  LL   +
Sbjct: 431 AHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              +   G Q H+  IR      + V+  LVHMY+  G +  A ++F  M+ER+  +WNS
Sbjct: 491 NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNS 550

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I G+  NG+  EAL LF++M   G++PD +++ S+ S+C  L     GR  H ++ +  
Sbjct: 551 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT 610

Query: 275 LSDNVNVNNALLDFYSKCG---------------------IIIA----------AQRVFR 303
           + +   +   L+D Y+KCG                     ++++          A+ +F 
Sbjct: 611 MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFD 670

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
           +M +RN   W++++ G A  G  KE+   F EM         +T V ++  CS    ++ 
Sbjct: 671 QMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEH 730

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           G      +  +  +   +     +VD+  + G + +A     NM    N V W  ++   
Sbjct: 731 GDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNM-NGKNIVSWNAMISGY 789

Query: 424 TIHGHSAIAEI 434
           + HG S  A I
Sbjct: 790 SKHGCSKEALI 800


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 320/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAIS 154
           A  +F  +   + F+WN +I GY      + A++L+  M  +     +  T    L A +
Sbjct: 148 ARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAA 207

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            ++ +R G++ H   IR+G E    V  +L+ +Y   G + +A  +F+ M+++D+V+W +
Sbjct: 208 AISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTT 267

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+    +G+  E  +LFR++   GV P+ YT   + +ACA+L A  +G+  H Y+ +VG
Sbjct: 268 MIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVG 327

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                   +AL+  YSKCG    A+RVF +M + + VSW++L+VG A NG    AL+ F+
Sbjct: 328 YDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFE 387

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            +   G  P E+TFVGVL AC+H G+VD G  YF  +K+++G++   +H+ C++DLL R+
Sbjct: 388 SLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARS 447

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G  K+A   I NM M P+  +W +LLG C IHG+  +AE A   L +LEP++   Y+ LS
Sbjct: 448 GRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLS 507

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA    W    +VR  M    + K PG S +E+  +V  F +GD SHP+  +IH  L 
Sbjct: 508 NIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLG 567

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E++KK+K EGYV  T  V  D+EEE+KE  + YHSEK+A+AF +++T+PGTP++V KNLR
Sbjct: 568 ELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLR 627

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            C DCH A+K ISK+  R+I+VRD +RFH F DG CSC+DY
Sbjct: 628 TCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 10/270 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           K++H + IR G+ L+     + +  A++ L      ++ A  IF  + D +I +W TMI 
Sbjct: 216 KEIHGYLIRSGLELD-----EVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIH 270

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
              E         L+  +  SG++P+ +T+  +L A + LA  +MG++ H    R G++ 
Sbjct: 271 RCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDP 330

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F  ++LVH+Y+  G+ + A +VF  M   DLV+W S+I G+A NG+P+ AL  F  + 
Sbjct: 331 FSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLL 390

Query: 237 SEGVEPDGYTMVSLFSACAELGALALG-RRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             G +PD  T V + SAC   G + +G    H+   K GL    +    ++D  ++ G  
Sbjct: 391 RSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRF 450

Query: 296 IAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
             A+ +   M  K +   W++L+ G  ++G
Sbjct: 451 KEAENIIDNMPMKPDKFLWASLLGGCRIHG 480



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 40/328 (12%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           +P    Y  L+ A  +   + +G++ H+    + F   + + N L+HMYA  G + DA  
Sbjct: 60  QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQM 119

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE----------GVEPDGYTM-- 247
           +F+ + ++DL +WN++I+G+A+ G+  +A  LF EM             G    G+ M  
Sbjct: 120 LFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEA 179

Query: 248 VSLFSACAE--------------------LGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           + LF    E                    + +L  G+  H Y+ + GL  +  V  ALLD
Sbjct: 180 LDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLD 239

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y KCG +  A+ +F +M  ++ VSW+T++     +G  KE   LF+++   G  P E T
Sbjct: 240 LYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT 299

Query: 348 FVGVLYACSHCG---MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           F GVL AC+      M  E   Y  R+    G  P       +V +  + G  + A   +
Sbjct: 300 FAGVLNACADLAAEQMGKEVHGYMTRV----GYDPFSFAASALVHVYSKCGNTETA-RRV 354

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            N +  P+ V W +L+     +G   +A
Sbjct: 355 FNQMPRPDLVSWTSLIVGYAQNGQPDMA 382


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/544 (40%), Positives = 321/544 (59%), Gaps = 23/544 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-----HTYPFLL 150
           A  +F  +   ++ +WNTMI GYA+  +   A  L+ +  V  +   T     +    +L
Sbjct: 207 ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML 266

Query: 151 KAISKLAD--VRMGEQTHSVAI------------RNGFESLVFVQ----NSLVHMYAAFG 192
               ++ D   +  E +++V I            R  FE + F      N ++  Y   G
Sbjct: 267 DEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNG 326

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            +  A  +F++M +RD V+W ++I G+A NG   EA+ +  EM  +G   +  T     S
Sbjct: 327 DLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALS 386

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           ACA++ AL LG++ H  V + G      V NAL+  Y KCG I  A  VF+ ++ ++ VS
Sbjct: 387 ACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS 446

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+T++ G A +GFG++AL +F+ M   G  P E+T VGVL ACSH G+ D G  YF  M 
Sbjct: 447 WNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMN 506

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +YGI P  +H+ CM+DLLGRAG +++A   I+NM   P+A  W  LLGA  IHG+  + 
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           E A   + ++EP +SG YVLLSNLYA   RW++V ++R  M +  V+KTPG+S VE+ N+
Sbjct: 567 EQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNK 626

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
           +  F +GD  HP+   I+A L E+  K+K EGYV  T+ V  D+EEEEK+  L YHSEK+
Sbjct: 627 IHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKL 686

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           A+AF ++    G P+RV+KNLRVC DCH AIK ISK+  R I+VRD  R+HHF +G CSC
Sbjct: 687 AVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSC 746

Query: 613 RDYW 616
           RDYW
Sbjct: 747 RDYW 750



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 146/287 (50%), Gaps = 8/287 (2%)

Query: 76  PDLGKY-LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           P++G + ++ +    +  ++ A N+F  +   +  +W  +I GYA++     A+ +  +M
Sbjct: 310 PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
              G   +  T+   L A + +A + +G+Q H   +R G+E    V N+LV MY   G +
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            +A  VF+ +  +D+V+WN+++ G+A +G   +ALT+F  M + GV+PD  TMV + SAC
Sbjct: 430 DEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSAC 489

Query: 255 AELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVS 312
           +  G    G    H+     G++ N      ++D   + G +  AQ + R M  + +A +
Sbjct: 490 SHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAAT 549

Query: 313 WSTLVVGLAVNG---FGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           W  L+    ++G    G++A E+  +ME      G    +  LYA S
Sbjct: 550 WGALLGASRIHGNMELGEQAAEMVFKMEPHN--SGMYVLLSNLYAAS 594



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 189/453 (41%), Gaps = 83/453 (18%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E+P T    K I+           L    A  +R+ V  N    G YL  A  SL     
Sbjct: 29  EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISG-YLRNAKFSL----- 82

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-- 152
            A ++F  +   ++F+WN M+ GYA +     A  L+  M     + D  ++  +L    
Sbjct: 83  -ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSM----PEKDVVSWNAMLSGYV 137

Query: 153 ----ISKLADV--RMGEQTH-------SVAIRNG--------FESL----VFVQNSLVHM 187
               + +  DV  RM  +         +  +R+G        FES     +   N L+  
Sbjct: 138 RSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGG 197

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           Y     + DA ++F+ +  RDL++WN++I+G+A +G  ++A  LF E     V    +T 
Sbjct: 198 YVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTW 253

Query: 248 VSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVN------------------------ 282
            ++  A  + G L   RR    +  K  +S NV +                         
Sbjct: 254 TAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIG 313

Query: 283 --NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
             N ++  Y + G +  A+ +F  M +R++VSW+ ++ G A NG  +EA+ +  EM+  G
Sbjct: 314 SWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH-FGCMVD--LLG---RA 394
                 TF   L AC+    ++ G       K  +G + +  +  GC+V   L+G   + 
Sbjct: 374 ESLNRSTFCCALSACADIAALELG-------KQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G + +AY+  Q  +   + V W T+L     HG
Sbjct: 427 GCIDEAYDVFQG-VQHKDIVSWNTMLAGYARHG 458



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 136/325 (41%), Gaps = 59/325 (18%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDL---GKYLIYAIVSLSFPMSYAHN-----IFSHVQDP 106
            K  L+Q+H+       P N P       + +    ++S  M   H      +F  +   
Sbjct: 3   GKFNLRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLR 62

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  ++N MI GY  +A   LA +L+ KM      P                         
Sbjct: 63  NSVSYNAMISGYLRNAKFSLARDLFDKM------PHKD---------------------- 94

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
                      +F  N ++  YA    ++DA  +F+ M E+D+V+WN++++G+  +G  +
Sbjct: 95  -----------LFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVD 143

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           EA  +F  M  +    +  +   L +A    G L   RR    +++      +   N L+
Sbjct: 144 EARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARR----LFESKSDWELISCNCLM 195

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             Y K  ++  A+++F ++  R+ +SW+T++ G A +G   +A  LF+E  +        
Sbjct: 196 GGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----F 251

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRM 371
           T+  ++YA    GM+DE    F  M
Sbjct: 252 TWTAMVYAYVQDGMLDEARRVFDEM 276


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 330/528 (62%), Gaps = 5/528 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAE---SANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           +  A  +F  +   ++ TW +MI GY++   +++   A+ L+ +M   G++P+      L
Sbjct: 142 LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSL 201

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           +K    L     G+Q H    + GF+  VFV +SLV MYA  G ++++  VF+ +  ++ 
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN++I+GFA  G+  EAL LF +M  EG     +T  +L  + +  G+L  G+  H +
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + K G      V N LL  Y+K G I  A++VF  + K + VS +++++G A +G GKEA
Sbjct: 322 MMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEA 381

Query: 330 LELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           +ELF+EM +   + P ++TF+ VL ACSH G++DEG  YF+ MK +YG+ PK+ H+  +V
Sbjct: 382 VELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVV 440

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DL GRAGL+ QA  +I+ M + PNA IW  LLGA  +H ++ +   A   +L+L+P + G
Sbjct: 441 DLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPG 500

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
            + LLSN+YA   +W +V +VR+ M    +KK P  S VE+ N V  F   D SHPQ  +
Sbjct: 501 AHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNK 560

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           ++ M   + +K+K  GYVP T +V   ++++EKE  L YHSEK+A+AF L+NT PG+ +R
Sbjct: 561 VYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIR 620

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++KN+RVC DCH AIK +S V  REI+VRD +RFHHF+DG CSCRDYW
Sbjct: 621 IMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 167/326 (51%), Gaps = 37/326 (11%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           ++PD   Y  LLK  + L  ++ G+  H+  + + F + + ++NS++ MYA  G ++ A 
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 199 KVFELMSERDLVAWNSVINGFASNG---KPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           +VF+ M  +D+V W S+I G++ +G       AL LF EM  +G+ P+ + + SL   C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
            LG+   G++ H   WK G  +NV V ++L+D Y++CG +  ++ VF E+  +N VSW+ 
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM---- 371
           L+ G A  G G+EAL LF +M+  GF   E T+  +L + S  G +++G      M    
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 372 ------------------------KDEYGIMPKIEHFGCMVDLLGRA--GLVKQAYEYIQ 405
                                   K  +  + K++   C   L+G A  GL K+A E  +
Sbjct: 327 KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFE 386

Query: 406 NMLM----PPNAVIWRTLLGACTIHG 427
            M++     PN + + ++L AC+  G
Sbjct: 387 EMMLWVEIEPNDITFLSVLTACSHAG 412


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/560 (38%), Positives = 332/560 (59%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+H+ ++R G+  ++    G   +YA       +  A  +F+ +   N+  W  ++ GY
Sbjct: 275 QQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGY 334

Query: 119 AESANPLLAVE-LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +  +    V  L+ KM   GI+P+  TY  +LKA + L D   G Q H+  +++    L
Sbjct: 335 VQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADL 394

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             V N+LV MYA  G +++A   F+ + E+++V+++  ++G   +G+ N       E   
Sbjct: 395 NVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQIERME 451

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G+    +T  SL SA A +G L  G+R H    K G   +  + N+L+  YS+CG ++ 
Sbjct: 452 LGIST--FTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVD 509

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A +VF EM   N +SW++++ GLA +G+   ALELF +M   G  P +VT++ VL ACSH
Sbjct: 510 ACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSH 569

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V EG  +F+ M+  +G++P++EH+ CMVDLLGR+GLV+ A ++I  M    +A++W+
Sbjct: 570 AGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWK 629

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           TLLGAC  H +  I EIA + ++QLEP+    YVLLSNLYA    W  V  +R  M  + 
Sbjct: 630 TLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKN 689

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           + K  G S + + N + EF  GD SHPQ EEI+  L  + +++K+ GYVP T  V  D+ 
Sbjct: 690 LMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMS 749

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGT-PVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +E KE  L  HSEKIA+AF L++    T P+R+ KNLRVC DCH A+K +SK   REI++
Sbjct: 750 DELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIIL 809

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFH  KDG CSC +YW
Sbjct: 810 RDSNRFHRMKDGECSCGEYW 829



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 175/340 (51%), Gaps = 15/340 (4%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + +  +  W  +I  YA+S     AVEL+  M  +G +PD +T   +L A ++L  
Sbjct: 211 VFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGS 270

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH---VKDACKVFELMSERDLVAWNSV 215
            R+G+Q HS+A+R G ES   V   LV MYA   +   + +A +VF  M + +++AW ++
Sbjct: 271 FRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTAL 330

Query: 216 INGFASNG-KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++G+   G + N+ + LF +M +EG+ P+  T  S+  ACA LG    GR+ HT+  K  
Sbjct: 331 LSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSN 390

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA-VNGFGKEALELF 333
           L+D   V NAL+  Y++ G I  A+  F ++ ++N VS+S  + G    N +    +E  
Sbjct: 391 LADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQIE-- 448

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLG 392
             ME+G       TF  ++ A +  GM+ +G   +   +K  +G    I +   +V +  
Sbjct: 449 -RMELG---ISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYS 502

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           R G +  A +    M    N + W +++     HG++A A
Sbjct: 503 RCGYLVDACQVFDEM-NDHNVISWTSMISGLAKHGYAARA 541



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 8/265 (3%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI--SKLADVRMGEQ 164
           ++ +W  M    + +     A+ L+ +    G+ P+  T     +A   S+L  +  G  
Sbjct: 116 DLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHL-AGGA 174

Query: 165 THSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
              +  + GF  + V V  +L+ M+A  G +    +VF+ + ER +V W  +I  +A +G
Sbjct: 175 VLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSG 234

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             +EA+ LF +M   G +PD YT+ S+ SAC ELG+  LG++ H+   ++GL  +  V+ 
Sbjct: 235 YSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSC 294

Query: 284 ALLDFYSKC---GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF-GKEALELFKEMEIG 339
            L+D Y+K      +  A+ VF  M K N ++W+ L+ G    G    + + LF +M   
Sbjct: 295 GLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNE 354

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEG 364
           G  P  +T+  +L AC++ G  D G
Sbjct: 355 GIRPNHITYSSMLKACANLGDQDSG 379



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 113/209 (54%), Gaps = 8/209 (3%)

Query: 158 DVRMGEQTHSVAIRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWN 213
           D+ +G       +R G   E+   V NSL+ +Y+    V  A  VF+ M    RDLV+W 
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELGALALGRRAHTYVW 271
           ++ +  + NG   EAL LF E   EG+ P+ +T+ +   AC  +EL  LA G      V+
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA-GGAVLGLVF 180

Query: 272 KVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
           K+G    +V+V  AL+D ++K G ++A +RVF  + +R  V W+ L+   A +G+  EA+
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           ELF +M   GF P + T   +L AC+  G
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELG 269


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/636 (38%), Positives = 352/636 (55%), Gaps = 56/636 (8%)

Query: 30  TPASQENPITSVVRKCIT------LLQVCASSKHKLKQVHAFSIRHGVPLNNP-DLGKYL 82
           +P+S  +P   V    +T      LL  CAS++ +  ++HA ++R GV  +   D     
Sbjct: 12  SPSSTRHPSGGVQHGVLTADRAAALLAGCASAR-RASELHAAAVRAGVDQDKAVDFRLQR 70

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKP 141
            YA    S  +  A  +     DP    + + I  ++       A+ L S+M +S G+ P
Sbjct: 71  AYAA---SGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLP 127

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY------------- 188
             HT    L A   LA   +G   H  A++       +V  +L+ MY             
Sbjct: 128 TAHTLSASLPACGGLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLF 184

Query: 189 -------------------AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
                              A  G + DA  +F+ +  +DL+ WN++++G+  +G+P+EAL
Sbjct: 185 DGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEAL 244

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG---LSDNVNVNNALL 286
            LFR M   GVEPD  ++V   SA A+LG    GR  H++V       +  N  V  AL+
Sbjct: 245 RLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALI 304

Query: 287 DFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           D Y KCG +  A  VF ++    R+ V+W+ +V G A++G  +EAL  F ++   G  P 
Sbjct: 305 DMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPT 364

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           ++TF+GVL ACSH G+VDEG   F+ M +EYGI PK+EH+GCMVDLLGRAG V++A+E +
Sbjct: 365 DITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELV 424

Query: 405 QNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           Q+M    P+AV+W +LL AC +H +  + +     L+     +SG YVLLSN+YA    W
Sbjct: 425 QSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNW 484

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V  VR  M    ++K PG S VE+G RV EF  GDRSHP+  EI+A L E+    +  
Sbjct: 485 REVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARAR 544

Query: 524 GYVPRTE---NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           G+VPRTE   +   D +   KE AL+ HSEK+A+AF L++T PGT +++VKNLR CADCH
Sbjct: 545 GHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCH 604

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             +KL+S+V  R+IV RDR+RFHHF DG C+C DYW
Sbjct: 605 AVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 325/523 (62%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +   + + N+ +W  MI  Y+++ +   A+ ++++M  S  KP+  T+  +L +  +
Sbjct: 105 ARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIR 164

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + + +G+Q H + ++  ++S +FV +SL+ MYA  G +++A ++FE + ERD+V+  ++
Sbjct: 165 ASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAI 224

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G   EAL +F+ + SEG+ P+  T  SL +A + L  L  G++AH +V +  L
Sbjct: 225 IAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRREL 284

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N+L+D YSKCG +  AQR+F  M +R A+SW+ ++VG + +G G+E LELF+ 
Sbjct: 285 PFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRL 344

Query: 336 MEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGR 393
           M     V P  VT + VL  CSH  M D G S +  M   EYGI P  EH+GC+VD+LGR
Sbjct: 345 MRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGR 404

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A+E+I+ M   P A +  +LLGAC +H    I E     L+++EP+++G+YV+L
Sbjct: 405 AGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVIL 464

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   RW +V  VR  M+++ V K PG S ++    +  F   DR+HP+ EE+ A +
Sbjct: 465 SNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKM 524

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            EI+ K+K  GYVP    V  D++EE+KE  L  HSEK+A+ F L+ T  G P+RV KNL
Sbjct: 525 KEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNL 584

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K+ SKV+ RE+ +RD++RFH    G CSC DYW
Sbjct: 585 RICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 146/288 (50%), Gaps = 10/288 (3%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           H Y  LL A      +R G++ H+  I+  +    +++  L+  Y     ++DA KV + 
Sbjct: 52  HCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 111

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M E+++V+W ++I+ ++  G  +EAL++F EM     +P+ +T  ++ ++C     LALG
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG 171

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           ++ H  + K     ++ V ++LLD Y+K G I  A+ +F  + +R+ VS + ++ G A  
Sbjct: 172 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQL 231

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS----YFKRMKDEYGIMP 379
           G  +EALE+F+ ++  G  P  VT+  +L A S   ++D G        +R    Y ++ 
Sbjct: 232 GLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 291

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                  ++D+  + G +  A     NM     A+ W  +L   + HG
Sbjct: 292 N-----SLIDMYSKCGNLSYAQRLFDNM-PERTAISWNAMLVGYSKHG 333


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/522 (40%), Positives = 313/522 (59%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  V   N   W  MI+G+   +      EL+S+M  SG + D      L++A   
Sbjct: 167 AHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGN 226

Query: 156 LADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +   + G+  H + I+  F +S  F+Q SLV MY   G +  A K+FE +S RD+V W++
Sbjct: 227 VYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSA 286

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I GFA NG+  E++++FR+M ++ V P+  T  S+  AC+ LG+L  GR  H Y+ + G
Sbjct: 287 IIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNG 346

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  +V    + +D Y+KCG I+ A RVF ++ ++N  SWST++ G  ++G   EAL LF 
Sbjct: 347 VELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFY 406

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM     +P  VTFV VL ACSH G ++EG+S+FK M  +YGI P  EH+ CMVDLLGRA
Sbjct: 407 EMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRA 466

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A  +I NM   P A  W  LLGAC IH  + +AE     LL LE   SG YV+LS
Sbjct: 467 GKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLS 526

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA    W  V++ R  M ++ + K  G + +E+  +++ F   DR   +  +I ++  
Sbjct: 527 NIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWN 586

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            + ++++  GYVP    V  D+++E K++ L  HSEK+AI F L+N+  G P+R+ KN+R
Sbjct: 587 SLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMR 646

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH A K IS +  R+I++RD  RFHH +DG CSC DYW
Sbjct: 647 VCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 186/406 (45%), Gaps = 16/406 (3%)

Query: 31  PASQENP---ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
           P S  NP   + S+ R   TL     +S H+L      +  H   L  P     +I+   
Sbjct: 8   PISSRNPTKTLLSLFRFTKTL-----ASNHQLNAQILVNALHRSLLFGP-----MIFGAY 57

Query: 88  SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
                +  A   F+H+   N+ +WNT++  ++++      ++L+ +M   G   D+    
Sbjct: 58  IQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLV 117

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           F +KA   L+  +  +  HS+AI+   E   +V  +L+++Y   G +++A KVFE +  +
Sbjct: 118 FAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLK 177

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           + V W  +I G  +  +      LF  M   G E D + +  L  AC  + A   G+  H
Sbjct: 178 NSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFH 237

Query: 268 TYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
               K    D N  +  +L+D Y KCG +  A ++F E+  R+ V WS ++ G A NG  
Sbjct: 238 GLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRA 297

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
            E++ +F++M      P  VTF  ++ ACS  G + +G S    M    G+   ++++  
Sbjct: 298 LESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTS 356

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            +D+  + G +  AY  +   +   N   W T++    +HG  A A
Sbjct: 357 FIDMYAKCGCIVTAYR-VFCQIPEKNVFSWSTMINGFGMHGLCAEA 401



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 3/218 (1%)

Query: 48  LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           L+Q C +  +  + K  H   I+     +N  L   L+   +   F + +A  +F  +  
Sbjct: 220 LIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGF-LDFALKLFEEISY 278

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++  W+ +I G+A +   L ++ ++ +M    + P++ T+  ++ A S L  ++ G   
Sbjct: 279 RDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 338

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H   IRNG E  V    S + MYA  G +  A +VF  + E+++ +W+++INGF  +G  
Sbjct: 339 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 398

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
            EAL LF EM S    P+  T VS+ SAC+  G +  G
Sbjct: 399 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEG 436


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/528 (42%), Positives = 315/528 (59%), Gaps = 34/528 (6%)

Query: 123 NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN 182
           NP LA+ L+  +  SG  PD   Y   L   ++        Q H  A + G  S   V+N
Sbjct: 55  NPHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRN 114

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA---------------------- 220
            L+H Y+  G + DA KVF+   E D++AWN ++ G+A                      
Sbjct: 115 GLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVS 174

Query: 221 ---------SNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
                    +NG+  EA+ +FREM AS   +PD  T+VS+ SA A LGALA G  AH YV
Sbjct: 175 WNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYV 234

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEA 329
            +  +  +  +++AL++ YSKCG I  A  VF      R+  +W+ ++ G   +G  + A
Sbjct: 235 CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERA 294

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LELF  ME  GFVP ++TF  +L ACSH G V+EG  YF+RM +   I P I H+GCMVD
Sbjct: 295 LELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVD 354

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           L  RAGL ++A E IQ M M P+A +W+ L+GAC  + +  + + A   L++  P     
Sbjct: 355 LFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAG 414

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA +  W  V +VR+ M+   V+K PG S +EL   + EF  GD+SH +  ++
Sbjct: 415 YVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDV 474

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           + ML+EI ++LK+ GY P T  V  DI++E+ KE +L+ HSE++A+AF L++TAPGTP+R
Sbjct: 475 YEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIR 534

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +VKNLRVC DCH AIKL+SK+Y R I+VRD +RFH F++G CSC DYW
Sbjct: 535 IVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG---- 162
           ++ TWN M+ G+  S     A+EL+++M  SG  P+  T+  LL A S    V  G    
Sbjct: 274 SVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYF 333

Query: 163 -EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVING 218
              T+S +I    E  +     +V ++   G  + A ++ ++M  E D   W +++  
Sbjct: 334 ERMTNSSSI----EPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGA 387


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 322/549 (58%), Gaps = 28/549 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ N+ +W+ MI  Y        A++L+  M  SG+ PD  T   LL A   
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACIN 372

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             ++    Q H+ A  +G    + V N LVH Y+ +  + DA  +F+ M  RD V+W+ +
Sbjct: 373 CRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVM 432

Query: 216 INGFAS----------------------------NGKPNEALTLFREMASEGVEPDGYTM 247
           + GFA                              G  NE+L LF +M  EGV PD   M
Sbjct: 433 VGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAM 492

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           V++  ACA+LGA+   R    Y+ +     +V +  A++D ++KCG + +A+ +F  M +
Sbjct: 493 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 552

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           +N +SWS ++     +G G++AL+LF  M   G +P ++T V +LYACSH G+V+EG  +
Sbjct: 553 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 612

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  M ++Y +   ++H+ C+VDLLGRAG + +A + I++M +  +  +W   LGAC  H 
Sbjct: 613 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 672

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
              +AE A ++LL+L+P++ G Y+LLSN+YA   RW +V + R  M + R+KK PG + +
Sbjct: 673 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWI 732

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+ N+  +F +GD +HP+++EI+ ML  +  KL+L GYVP T  V  D++EE K   L  
Sbjct: 733 EVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYS 792

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF L+ T   TP+R++KNLRVC DCH   KL+S +  R I+VRD +RFHHFK+
Sbjct: 793 HSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKE 852

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 853 GACSCGDYW 861



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 177/345 (51%), Gaps = 48/345 (13%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +++QVHA +  HG+ L N  +   LIY   S    +  A+ +F  +   +  +W+ M+ G
Sbjct: 96  QVRQVHAQASVHGM-LENIVVANKLIY-FYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           +A+  + +     + ++   G +PD +T PF+++A   L +++M                
Sbjct: 154 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---------------- 197

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
                +LV MY     ++DA  +F+ M ERDLV W  +I G+A  GK NE+L LF +M  
Sbjct: 198 -----ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 252

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EGV PD   MV++  ACA+LGA+   R    Y+ +     +V +  A++D Y+KCG + +
Sbjct: 253 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 312

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ +F  M ++N +SWS ++     +G G++AL+LF+ M   G +P ++T   +LYAC +
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACIN 372

Query: 358 C----------------GMVDE---------GFSYFKRMKDEYGI 377
           C                GM+            +SY++ + D YG+
Sbjct: 373 CRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGL 417



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 170/365 (46%), Gaps = 36/365 (9%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +Q+ ++ TW  MI GYAE      ++ L+ KM   G+ PD      ++ A +K
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 271

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +           R  F+  V +  +++ MYA  G V+ A ++F+ M E+++++W+++
Sbjct: 272 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAM 331

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +  +G+  +AL LFR M S G+ PD  T+ SL  AC     L   R+ H      G+
Sbjct: 332 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGM 391

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA-----VNGFG---- 326
             N+ V N L+ FYS    +  A  +F  M  R++VSWS +V G A     +N FG    
Sbjct: 392 LQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 451

Query: 327 -------------------KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS- 366
                               E+L LF +M   G VP +V  V V++AC+  G + +  + 
Sbjct: 452 LIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 511

Query: 367 --YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             Y +R K +  ++        M+D+  + G V+ A E    M    N + W  ++ A  
Sbjct: 512 DDYIQRKKFQLDVILGTA----MIDMHAKCGCVESAREIFDRM-EEKNVISWSAMIAAYG 566

Query: 425 IHGHS 429
            HG  
Sbjct: 567 YHGQG 571



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 29/285 (10%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           F + A+    ++    Q H+ A  +G    + V N L++ Y+ +  + DA  +F+ M  R
Sbjct: 83  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 142

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+W+ ++ GFA  G        FRE+   G  PD YT+  +  AC +L          
Sbjct: 143 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK--------- 193

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
                       N+  AL+D Y KC  I  A+ +F +M++R+ V+W+ ++ G A  G   
Sbjct: 194 ------------NLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 241

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF---SYFKRMKDEYGIMPKIEHF 384
           E+L LF++M   G VP +V  V V++AC+  G + +      Y +R K +  ++      
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA-- 299

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             M+D+  + G V+ A E    M    N + W  ++ A   HG  
Sbjct: 300 --MIDMYAKCGCVESAREIFDRM-EEKNVISWSAMIAAYGYHGQG 341



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 135/290 (46%), Gaps = 33/290 (11%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +LL  C + ++  +++QVHA +  HG+ L N  +   L++   S    +  A+ +F  + 
Sbjct: 365 SLLYACINCRNLTQVRQVHAQASVHGM-LQNLIVANKLVH-FYSYYRALDDAYGLFDGMC 422

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF---------------- 148
             +  +W+ M+ G+A+  + +     + ++   G +PD +T PF                
Sbjct: 423 VRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMRE 482

Query: 149 ------------LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
                       ++ A +KL  +           R  F+  V +  +++ M+A  G V+ 
Sbjct: 483 EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 542

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A ++F+ M E+++++W+++I  +  +G+  +AL LF  M   G+ P+  T+VSL  AC+ 
Sbjct: 543 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 602

Query: 257 LGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
            G +  G R  + +W+   +  +V     ++D   + G +  A ++   M
Sbjct: 603 AGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 652


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/549 (42%), Positives = 319/549 (58%), Gaps = 33/549 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + + +  +WNTMI GYA++   L A  L+ +  V     D  T+  ++    +
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQ 278

Query: 156 ---LADVR-----MGEQTHSVA----------------IRNGFESL----VFVQNSLVHM 187
              L + R     M E+ +SV+                 R  FE++    V   N+++  
Sbjct: 279 NGMLDEARRVFDGMPEK-NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 337

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           YA  G +  A   F+ M +RD ++W ++I G+A +G   EAL LF EM  +G   +  T 
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 397

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
            S  S CAE+ AL LG++ H  V K GL     V NALL  Y KCG I  A  VF  + +
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE 457

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           +  VSW+T++ G A +GFGKEAL LF+ M+  G +P +VT VGVL ACSH G+VD+G  Y
Sbjct: 458 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 517

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  M  +YGI    +H+ CM+DLLGRAG +  A   ++NM   P+A  W  LLGA  IHG
Sbjct: 518 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 577

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           ++ + E A   + ++EP +SG YVLLSNLYA   RW +V  +R  M    VKK PG+S V
Sbjct: 578 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+ N++  F +GD  HP+ + I+  L E+  K+K EGYV  T+ V  D+EEEEK   L Y
Sbjct: 638 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKY 697

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+A+AF ++    G P+RV+KNLRVC DCH A+K ISK+  R I++RD  RFHHF  
Sbjct: 698 HSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNG 757

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 758 GQCSCGDYW 766



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A N F  +   +  +W  +I GYA+S     A+ L+ +M   G + +  T+   L  
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +++A + +G+Q H   ++ G ES  +V N+L+ MY   G++ DA  VFE + E+++V+W
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 463

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           N++I G+A +G   EAL LF  M   G+ PD  TMV + SAC+  G +  G    ++   
Sbjct: 464 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 523

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGK 327
             G++ N      ++D   + G +  AQ + + M  + +A +W  L+    ++G    G+
Sbjct: 524 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 583

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACS 356
           +A ++  EME      G    +  LYA S
Sbjct: 584 KAAKMIFEMEPDN--SGMYVLLSNLYAAS 610



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N ++     + +++ A  +F+ M ERD+V+WN++++G+A NG   EA  +F EM  +   
Sbjct: 115 NVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK--- 171

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            +  +   + +A  + G +   RR    +++      +   N ++  Y K   ++ A+ +
Sbjct: 172 -NSISWNGMLAAYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGI 226

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  M +R+ VSW+T++ G A NG   EA  LF+E      V    T+  ++      GM+
Sbjct: 227 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESP----VRDVFTWTAMVSGYVQNGML 282

Query: 362 DEGFSYFKRMKDEYGI 377
           DE    F  M ++  +
Sbjct: 283 DEARRVFDGMPEKNSV 298



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 26/178 (14%)

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
           L ++ D+V WN  I     NG+ + AL LF  M          +  ++ S C       L
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYL 98

Query: 263 GRRAHTYV-------WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
            R+    +       W V +S  V   N           + AA+ +F +M +R+ VSW+ 
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRN-----------LRAARLLFDQMPERDVVSWNA 147

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++ G A NG+ KEA E+F EM         +++ G+L A    G +++    F+   D
Sbjct: 148 MLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAAYVQNGRIEDARRLFESKAD 201


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 322/556 (57%), Gaps = 30/556 (5%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           QVH   +R G   N   +G  L+  + S    +S A  +   ++  +  +WN+MI G   
Sbjct: 261 QVHGCIVRSGFGAN-VFVGSALV-DMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVR 318

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
                 A+ L+  MH+  +K D  TYP +L   S + D+R     HS+ ++ GFE+   V
Sbjct: 319 QGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLV 378

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+LV MYA  G+   A  VFE M+++D+++W S++ G   NG   EAL LF EM   G+
Sbjct: 379 NNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGI 438

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            PD   + ++ SACAEL  L  G++ H    K GL  +++V+N+L+  Y+KCG I  A +
Sbjct: 439 HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 498

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  M  ++ ++W+ L+VG A NG G++                            H G+
Sbjct: 499 VFDSMEIQDVITWTALIVGYAQNGRGRD----------------------------HAGL 530

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V+ G SYF+ M++ YGI P  EH+ CM+DLLGR+G + +A E +  M + P+A +W+ LL
Sbjct: 531 VEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL 590

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
            AC +HG+  + E A + L +LEPK++  YVLLSNLY+   +W    + RR M    V K
Sbjct: 591 AACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSK 650

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+ ++V  F   DRSHP+T EI++ + EI   +K  GYVP       D++EE 
Sbjct: 651 EPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG 710

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L+YHSEK+A+AF L+   PG P+R+ KNLR+C DCH A+K +S V+ R +++RD +
Sbjct: 711 KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSN 770

Query: 601 RFHHFKDGHCSCRDYW 616
            FHHF++G CSC DYW
Sbjct: 771 CFHHFREGACSCSDYW 786



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 174/347 (50%), Gaps = 25/347 (7%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F      +  TW+++I GY      + A+EL+ +M   G +P+  T+  +L+ 
Sbjct: 88  LNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRV 147

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM-SERDLVA 211
            S    +  G+Q H+ AI+  F+S  FV   LV MYA    + +A  +FEL   +R+ V 
Sbjct: 148 CSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVL 207

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W +++ G++ NG  ++A+  FR+M  EG+E + +T  S+ +AC  + A   G + H  + 
Sbjct: 208 WTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIV 267

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           + G   NV V +AL+D YSKCG +  A+R+   M   + VSW++++VG    G G+EAL 
Sbjct: 268 RSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALS 327

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEYGIMPK 380
           LF+ M +      E T+  VL   S           H  +V  GF  +K + +       
Sbjct: 328 LFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNA------ 381

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                 +VD+  + G    A++  + M    + + W +L+  C  +G
Sbjct: 382 ------LVDMYAKRGYFDYAFDVFEKM-TDKDVISWTSLVTGCVHNG 421



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+++  YA  G + +A K+F     R  + W+S+I+G+   G   EAL LF EM  EG  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +T  S+   C+    L  G++ H +  K     N  V   L+D Y+KC  I+ A+ +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 302 FR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC---SH 357
           F     KRN V W+ +V G + NG G +A+E F++M   G    + TF  +L AC   S 
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           CG   +      R     G    +     +VD+  + G +  A   ++ M +  + V W 
Sbjct: 256 CGFGAQVHGCIVRS----GFGANVFVGSALVDMYSKCGDLSNARRMLETMEV-DDPVSWN 310

Query: 418 TLLGACTIHG 427
           +++  C   G
Sbjct: 311 SMIVGCVRQG 320



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 31/142 (21%)

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C +L    L      +V   G   + + +N +L   SKCG +  A+++F  M  R+  SW
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 314 STLVVGLA--------------------------VNGFGK-----EALELFKEMEIGGFV 342
           +T++   A                          ++G+ +     EALELF EM+  G  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 343 PGEVTFVGVLYACSHCGMVDEG 364
           P + T+  VL  CS   ++++G
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKG 157


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 321/523 (61%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W  MI  Y++      A+ L+ +M  S  +P+  T+  +L +   
Sbjct: 116 ARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 175

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q HS+AI+  +ES +FV +SL+ MYA  G + DA  VF  + ERD+VA  ++
Sbjct: 176 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 235

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR++  EG+  +  T  S+ +A + L AL  G++ H++V + G 
Sbjct: 236 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 295

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG +  A+R+F  M +R  +SW+ ++VG + +G  +E LELFK 
Sbjct: 296 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 355

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGR 393
           M E     P  +T++ VL  CSH  + D G   F  M + + GI P I H+GC+VDLLGR
Sbjct: 356 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 415

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG V++A+++I+ M   P A IW +LLG+C +H    I  I    LL+LEP+++G+YV+L
Sbjct: 416 AGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVIL 475

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   +W +++ +R  M ++ V K PG S VEL   V  F   D +HP+ EE+   +
Sbjct: 476 SNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKV 535

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E++ K K +GYVP    V  D++EE+KE  L  HSEK+A+AF L+ T  GT +RV+KNL
Sbjct: 536 KELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNL 595

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K +S++Y+R +++RD++RFH+   G CSC DYW
Sbjct: 596 RICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 4/296 (1%)

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           +M + G +     Y  +L        +R G++ H+  I+  +   V+++  L+ +Y    
Sbjct: 52  QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 111

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            + DA  +F+ M +R++V+W ++I+ ++  G   EAL LF EM     EP+ +T  ++ +
Sbjct: 112 CLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 171

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           +C        GR+ H+   K     ++ V ++LLD Y+K G I  A  VF  + +R+ V+
Sbjct: 172 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 231

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
            + ++ G A  G  +EAL+LF++++I G     VT+  VL A S    ++ G      + 
Sbjct: 232 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVL 291

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
              G    +     ++D+  + G V  A     +  MP    I W  +L   + HG
Sbjct: 292 RS-GQYSYVVLLNSLIDMYSKCGNVCYARRIFDS--MPERTCISWNAMLVGYSKHG 344



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           +T L   A+  H  KQVH+  +R G    V L N  +  Y      S    + YA  IF 
Sbjct: 271 LTALSGLAALNHG-KQVHSHVLRSGQYSYVVLLNSLIDMY------SKCGNVCYARRIFD 323

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAIS--KLAD 158
            + +    +WN M+ GY++       +EL+  M     +KPD+ TY  +L   S  +L D
Sbjct: 324 SMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLED 383

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           + +    + V  ++G E  +     +V +    G V++A
Sbjct: 384 MGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 422


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 353/567 (62%), Gaps = 6/567 (1%)

Query: 43  RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAHNIFS 101
           R  + +LQ C +S +KL+++H+  I +G+  ++P +  +L+ +  VS++  +SYA  +F 
Sbjct: 6   RVIVRMLQGC-NSMNKLRKIHSHVIINGLH-HHPSIFNHLLRFCAVSVNGSLSYAQLLFD 63

Query: 102 HVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLADV 159
               DP+   WN +IRG++ S++PL  +  Y++M +S + +PD  T+ F LKA  ++  +
Sbjct: 64  RFDSDPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLI 123

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
               + H   IR+GF +   V  +LV  Y+A G V+ A KVF+ M  RDLV+WN++I+ F
Sbjct: 124 PKCLELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCF 183

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           +  G  ++A +++  MA+EGV  D YT+V+L S+CA + AL +G   H     +    +V
Sbjct: 184 SHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSV 243

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NAL+D Y+KCG +  A  VF+ MRKR+ ++W+++++G  V+G G EA+  F++M   
Sbjct: 244 FVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVAS 303

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  VTF+G+L  CSH G+V EG  +F+ M  ++ + P ++H+GCMVDL GRAG +++
Sbjct: 304 GVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEK 363

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E I       + V+WRTLLG+C IH +  + E+A   L+QLE  ++GDYVL++++Y+ 
Sbjct: 364 ALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSA 423

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
                    +R+ +    ++  PG S +E+G++V +F + D+ HP++  I++ L E+  +
Sbjct: 424 ANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINR 483

Query: 520 LKLEGYVPRTENVFA-DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
             L GY P   N  A  + +   E A + HSEK+AIA+ L+ T  GT +R+ KNLRVC D
Sbjct: 484 AILAGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRD 543

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHF 605
           CH   K +SK ++REI+VRDR RFH F
Sbjct: 544 CHSFTKYVSKAFNREIIVRDRVRFHQF 570


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 349/563 (61%), Gaps = 8/563 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           ++VH   + +G    +P L   LI  + S    +  A  +F   ++  I+ +N + R  +
Sbjct: 90  QRVHRHLLENGFD-QDPFLATKLI-NMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALS 147

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK----LADVRMGEQTHSVAIRNGFE 175
            + +    + +Y +M+  GI  D  TY ++LKA       ++ +  G + H+  +R+G++
Sbjct: 148 LAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYD 207

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             V +  +LV MYA FG V +A  VF  M  +++V+W+++I  +A NGK  EAL LFRE+
Sbjct: 208 GYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFREL 267

Query: 236 ASEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
             E  +  P+  TMVS+  ACA L AL  GR  H Y+ + GL   + V +AL+  Y++CG
Sbjct: 268 MLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCG 327

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +   QRVF +M KR+ VSW++L+    V+GFGK+A+ +F+EM   G  P  ++FV VL 
Sbjct: 328 KLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLG 387

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G+VDEG   F  M   +GI P +EH+ CMVDLLGRA  +++A + I+NM + P  
Sbjct: 388 ACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGP 447

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            +W +LLG+C IH +  +AE A   L  LEP ++G+YVLL+++YA    W  V+ V++ +
Sbjct: 448 KVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLL 507

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
               ++K PG S +E+  +++ F   D  +P+ E++HA+L +++ +LK EGYVP+T+ V 
Sbjct: 508 EARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVL 567

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D++  EKE  +  HSEK+A+AF L+N++ G  +R+ K+LR+C DCH   K ISK  ++E
Sbjct: 568 YDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKE 627

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           I+VRD +RFHHF+DG CSC DYW
Sbjct: 628 ILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 158/344 (45%), Gaps = 20/344 (5%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I+   +  N   A+EL S        P  HTY  L+ + +    +   ++ H   + 
Sbjct: 43  NKLIQSLCKQGNLTQALELLSLEP----NPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           NGF+   F+   L++MY+ F  + +A KVF+    R +  +N++    +  G   E L +
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 232 FREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           +R M S G+  D +T   +  AC      +  L  GR  H ++ + G    V++   L+D
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVD 218

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE--MEIGGFVPGE 345
            Y+K G +  A  VF +M  +N VSWS ++   A NG   EALELF+E  +E     P  
Sbjct: 219 MYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNS 278

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           VT V VL AC+    +++G     Y  R K    I+P I     M    G+  L ++ ++
Sbjct: 279 VTMVSVLQACAALAALEQGRLIHGYILR-KGLDSILPVISALVTMYARCGKLELGQRVFD 337

Query: 403 YIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
            +       + V W +L+ +  +H  G  AI      T   +EP
Sbjct: 338 QMDKR----DVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEP 377



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 138/272 (50%), Gaps = 19/272 (6%)

Query: 48  LLQVCASSK------HKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           +L+ C +S+      +K +++HA  +RHG    V +    +  Y  +  V      S A 
Sbjct: 177 VLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCV------SNAS 230

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK--MHVSGIKPDTHTYPFLLKAISK 155
            +F+ +   N+ +W+ MI  YA++     A+EL+ +  +    + P++ T   +L+A + 
Sbjct: 231 CVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAA 290

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G   H   +R G +S++ V ++LV MYA  G ++   +VF+ M +RD+V+WNS+
Sbjct: 291 LAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSL 350

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I+ +  +G   +A+ +F EM   GVEP   + VS+  AC+  G +  G+     +    G
Sbjct: 351 ISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHG 410

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           +  +V     ++D   +   +  A ++   MR
Sbjct: 411 ICPSVEHYACMVDLLGRANRLEEAAKIIENMR 442


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/528 (41%), Positives = 326/528 (61%), Gaps = 1/528 (0%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK-PDTHTYPF 148
           S  ++ A   F  +   ++  W+ MI  YA+S     A+EL+ +M  S +  P+  T+  
Sbjct: 253 SGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFAS 312

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L+A + L  + +G Q HS  ++ G +S VFV N+L+ +YA  G ++++ K+F   +E++
Sbjct: 313 VLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKN 372

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            VAWN++I G+   G   +AL LF  M    ++P   T  S+  A A L AL  GR+ H+
Sbjct: 373 EVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHS 432

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              K   + +  V N+L+D Y+KCG I  A+  F +M K++ VSW+ L+ G +++G G E
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL LF  M+     P ++TFVGVL ACS+ G++D+G ++FK M  +YGI P IEH+ CMV
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
            LLGR+G   +A + I  +   P+ ++WR LLGAC IH +  + ++    +L++EP+   
Sbjct: 553 WLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDA 612

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
            +VLLSN+YA  +RW NV  VR+ M K++VKK PG S VE    V  F +GD SHP  + 
Sbjct: 613 THVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKL 672

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I AML  + KK +  GYVP    V  D+E++EKE  L  HSE++A+AF L+    G  +R
Sbjct: 673 IFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIR 732

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++KNLR+C DCH  IKL+SK+  REIV+RD +RFHHF+ G CSC DYW
Sbjct: 733 IIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 168/366 (45%), Gaps = 13/366 (3%)

Query: 60  KQVHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           K +H   ++HG  L+    N  L  Y+ +        +  A  +F  +   N  ++ T+ 
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYVHFGF------LEDASKLFDEMPLTNTVSFVTLA 76

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           +G++ S     A  L  ++   G + +   +  LLK +  +         H+   + G +
Sbjct: 77  QGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQ 136

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           +  FV  +L+  Y+  G+V  A +VF+ +  +D+V+W  ++  +A N    ++L LF +M
Sbjct: 137 ADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM 196

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
              G  P+ +T+ +   +C  L A  +G+  H    KV    ++ V  ALL+ Y+K G I
Sbjct: 197 RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEI 256

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPGEVTFVGVLYA 354
             AQ+ F EM K + + WS ++   A +   KEALELF  M      VP   TF  VL A
Sbjct: 257 AEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQA 316

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+   +++ G +       + G+   +     ++D+  + G ++ + +         N V
Sbjct: 317 CASLVLLNLG-NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGS-TEKNEV 374

Query: 415 IWRTLL 420
            W T++
Sbjct: 375 AWNTII 380



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D+H+Y  +L+   +  D   G+  H   +++G    +F QN L++ Y  FG ++DA K+F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + M   + V++ ++  GF+ + +   A  L   +  EG E + +   +L      +    
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
                H YV+K+G   +  V  AL+D YS CG + AA++VF  +  ++ VSW+ +V   A
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            N   +++L LF +M I G+ P   T    L +C+       G   FK  K  +G   K+
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKV 234

Query: 382 -----EHFG-CMVDLLGRAGLVKQAYEYIQNM----LMPPNAVIWR 417
                 + G  +++L  ++G + +A ++ + M    L+P + +I R
Sbjct: 235 CYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISR 280


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 324/552 (58%), Gaps = 32/552 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N  +W  MI GYA++     A++L   +H +G+ P   +      A S 
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA----------AFGHVK---------- 195
           +  +  G Q HS+A++ G +   +V N+L+ MY            F  ++          
Sbjct: 431 IGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSF 490

Query: 196 -----------DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                      DA  +F+ M  RD+V+W ++I+ +A   + +EA+  F+ M  E  +P+ 
Sbjct: 491 IAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNS 550

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +  L S C  LG+  LG++ HT   K G+   + V NAL+  Y KCG    + +VF  
Sbjct: 551 PILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCA-DSHKVFDS 609

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M +R+  +W+T + G A +G G+EA+++++ ME  G +P EVTFVG+L ACSH G+VDEG
Sbjct: 610 MEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEG 669

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
           + +FK M  +YG+ P +EH+ CMVDLLGR G V+ A ++I +M + P+ VIW  LLGAC 
Sbjct: 670 WQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACK 729

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IH ++ I   A   L   EP ++G+YV+LSN+Y+    W+ V E+R+ M +  V K PG 
Sbjct: 730 IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGC 789

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +++ N+V  F  GD+ H + EEI   L ++   L+  GYVP TE V  DI+EE+KE +
Sbjct: 790 SWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESS 849

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEK+A+A+ L+ T  G P++++KNLR+C DCH  IK +S V  R+I +RD +RFHH
Sbjct: 850 LLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHH 909

Query: 605 FKDGHCSCRDYW 616
           F++G CSC D+W
Sbjct: 910 FRNGSCSCGDFW 921



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 24/396 (6%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S  M  A N+F  +   N+ TW  MI GY          +++  MH  G  PD   +  +
Sbjct: 170 SRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASV 229

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD-ACKVFELMSERD 208
           L A++ L D+ + E    + ++ GFES V +  S++++Y       D A K F+ M ER+
Sbjct: 230 LSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERN 289

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA-LGRRAH 267
              W+++I   +  G+ + A+ ++      G +P    + S+ S  A L  LA  GR   
Sbjct: 290 EYTWSTMIAALSHGGRIDAAIAVY------GRDP----VKSIPSQTALLTGLARCGRITE 339

Query: 268 TYVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
             +    + D + V+ NA++  Y + G++  A+ +F  M  RN +SW+ ++ G A NG  
Sbjct: 340 ARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRS 399

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EAL+L + +   G +P   +      ACSH G ++ G      +  + G          
Sbjct: 400 EEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG-RQVHSLAVKAGCQFNSYVCNA 458

Query: 387 MVDLLGRAGLVKQAYEYIQ---NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           ++ + G+     +  EY++   N +   + V W + + A      + + E AR     + 
Sbjct: 459 LISMYGKC----RNMEYVRQVFNRMRVKDTVSWNSFIAALV---QNNMLEDARHIFDNML 511

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
            +    +  + + YA  +R     E  +TM+ E  K
Sbjct: 512 SRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK 547



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 151/362 (41%), Gaps = 42/362 (11%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +I  WN+MI  Y  S     A  L+  +    ++    T   LL   ++
Sbjct: 52  AREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TATILLSGYAR 107

Query: 156 LA---DVR-----MGEQTH-------SVAIRNG--------FESL----VFVQNSLVHMY 188
           L    D R     M E+         S  ++NG        F+++    V   NS+V  Y
Sbjct: 108 LGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGY 167

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
                + DA  +F+ M +R+LV W  +I+G+    +  +   +FR M  EG  PD     
Sbjct: 168 CHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFA 227

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-CGIIIAAQRVFREMRK 307
           S+ SA   L  L +       V K G   +V +  ++L+ Y++    +  A + F  M +
Sbjct: 228 SVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           RN  +WST++  L+  G    A+ ++    +   +P +     +L   + CG + E    
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS-IPSQ---TALLTGLARCGRITEARIL 343

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F+++ D     P +  +  M+    + G+V +A E    M    N + W  ++     +G
Sbjct: 344 FEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPF-RNTISWAGMIAGYAQNG 397

Query: 428 HS 429
            S
Sbjct: 398 RS 399



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 15/201 (7%)

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
           A  G +++A +VF+ M  RD++AWNS+I+ + ++G   +A  LF  ++   V     T  
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TAT 99

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
            L S  A LG +   RR        G+ + N    NA++  Y + G I  A+R+F  M  
Sbjct: 100 ILLSGYARLGRVLDARRVFD-----GMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           R+  SW+++V G   +    +A  LFK+M     V   V   G +    H     +G+  
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQH----GKGWDI 210

Query: 368 FKRMKDEYGIMPKIEHFGCMV 388
           F+ M  E G  P   +F  ++
Sbjct: 211 FRMMHHE-GASPDQSNFASVL 230


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/522 (41%), Positives = 315/522 (60%), Gaps = 6/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           A  +F  +   N+ +W T++   A +      A+    +M   G+  +++T+  +L A  
Sbjct: 126 ALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACG 185

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
               +      H+  I+ G +S VFV++SL+  Y   G +     VF+ M   DLV WNS
Sbjct: 186 TPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNS 242

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I GFA +G    A+ LF  M   G   +  T+ S+  AC  +  L +GR+ H +V K  
Sbjct: 243 IIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKY- 301

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              ++ ++NALLD Y KCG ++ A  +F  M  R+ +SWST++ GLA NG   EAL++F 
Sbjct: 302 -DRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFD 360

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  G  P  +T VGVL+ACSH G+V++G+ YF+ M   +GI P+ EH  CMVDLLGRA
Sbjct: 361 LMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRA 420

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A ++I  M   P++VIWRTLLGAC +H ++ +A  A + +L+LEP+  G  +LLS
Sbjct: 421 GKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLS 480

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  ++W N ++  +TM  + VKK PG S +ELG  V  F  G+ SHP ++ I   L 
Sbjct: 481 NIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELN 540

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
            + ++ K  GYVP+TE V  D+  E+KED L YHSEK+AIAF  +N+  G PVR++KNLR
Sbjct: 541 RLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLR 600

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +C DCH   KL+SK   + I++RD  RFHHF+ G CSC DYW
Sbjct: 601 ICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH------SVAIRNGFESLVFV 180
           A+ L   +  +G++ D  +   L+K   +   V  G   H      +          +FV
Sbjct: 50  ALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFV 109

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN-GKPNEALTLFREMASEG 239
            NSLV MYA FG + DA ++F  M +R++V+W +V+   A+  G+  EAL    EM  +G
Sbjct: 110 SNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDG 169

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V  + YT  S+  AC   G LA     H  + KVGL  +V V ++L+D Y K G + + +
Sbjct: 170 VAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGR 226

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF EM   + V W++++ G A +G G  A+ELF  M+  GF+  + T   VL AC+   
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 360 MVDEG 364
           M++ G
Sbjct: 287 MLEVG 291


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/517 (39%), Positives = 309/517 (59%), Gaps = 1/517 (0%)

Query: 100  FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
            F  +    + +W ++I  Y        A+ L+ +M   G+ PD ++   +L A +    +
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
              G   H+   +N     + V N+L+ MYA  G +++A  VF  +  +D+V+WN++I G+
Sbjct: 772  DKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY 831

Query: 220  ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            + N  PNEAL LF EM  E   PDG TM  L  AC  L AL +GR  H  + + G S  +
Sbjct: 832  SKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890

Query: 280  NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +V NAL+D Y KCG ++ A+ +F  + +++ ++W+ ++ G  ++G G EA+  F++M I 
Sbjct: 891  HVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIA 950

Query: 340  GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
            G  P E+TF  +LYACSH G+++EG+ +F  M  E  + PK+EH+ CMVDLL R G + +
Sbjct: 951  GIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSK 1010

Query: 400  AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
            AY  I+ M + P+A IW  LL  C IH    +AE     + +LEP ++G YVLL+N+YA 
Sbjct: 1011 AYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAE 1070

Query: 460  EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             ++W  V+++R  + K  +KK+PG S +E+  +   F   D +HPQ + I ++L  +  K
Sbjct: 1071 AEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIK 1130

Query: 520  LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
            +K EG+ P+      +  + EKE AL  HSEK+A+AF ++N   G  +RV KNLRVC DC
Sbjct: 1131 MKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDC 1190

Query: 580  HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            H   K +SK   REI++RD +RFHHFKDG CSCRD+W
Sbjct: 1191 HEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 198/380 (52%), Gaps = 9/380 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV- 103
           ++LQ+CA  K   + K VH+    +G+P+    LG  L++  VS    +     IF H+ 
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGV-LGAKLVFMYVSCG-ALREGRRIFDHIL 513

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            D  +F WN M+  YA+  +   ++ L+ KM   GI  +++T+  +LK  + L  V   +
Sbjct: 514 SDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECK 573

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H    + GF S   V NSL+  Y   G V  A K+F+ + +RD+V+WNS+I+G   NG
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             + AL  F +M    V  D  T+V+  +ACA +G+L+LGR  H    K   S  V  NN
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            LLD YSKCG +  A + F +M ++  VSW++L+      G   +A+ LF EME  G  P
Sbjct: 694 TLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSP 753

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
              +   VL+AC+    +D+G      + K+   +   + +   ++D+  + G +++AY 
Sbjct: 754 DVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN--ALMDMYAKCGSMEEAY- 810

Query: 403 YIQNMLMPPNAVIWRTLLGA 422
            + + +   + V W T++G 
Sbjct: 811 LVFSQIPVKDIVSWNTMIGG 830



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 186/365 (50%), Gaps = 8/365 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  + D ++ +WN+MI G   +     A+E + +M +  +  D  T    + A + 
Sbjct: 607 AHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACAN 666

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  + +G   H   ++  F   V   N+L+ MY+  G++ DA + FE M ++ +V+W S+
Sbjct: 667 VGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSL 726

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +   G  ++A+ LF EM S+GV PD Y+M S+  ACA   +L  GR  H Y+ K  +
Sbjct: 727 IAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNM 786

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           +  + V+NAL+D Y+KCG +  A  VF ++  ++ VSW+T++ G + N    EAL+LF E
Sbjct: 787 ALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P  +T   +L AC     ++ G      +    G   ++     ++D+  + G
Sbjct: 847 MQKES-RPDGITMACLLPACGSLAALEIGRGIHGCIL-RNGYSSELHVANALIDMYVKCG 904

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLL 453
            +  A   + +M+   + + W  ++  C +H  G+ AIA   +  +  ++P    +    
Sbjct: 905 SLVHA-RLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD---EITFT 960

Query: 454 SNLYA 458
           S LYA
Sbjct: 961 SILYA 965



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 146/288 (50%), Gaps = 12/288 (4%)

Query: 38   ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYA 96
            +TSV+  C      C +S  K + VH +  ++ + L  P     + +YA       M  A
Sbjct: 758  MTSVLHAC-----ACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG---SMEEA 809

Query: 97   HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
            + +FS +   +I +WNTMI GY++++ P  A++L+++M     +PD  T   LL A   L
Sbjct: 810  YLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSL 868

Query: 157  ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            A + +G   H   +RNG+ S + V N+L+ MY   G +  A  +F+++ E+DL+ W  +I
Sbjct: 869  AALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMI 928

Query: 217  NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVWKVGL 275
            +G   +G  NEA+  F++M   G++PD  T  S+  AC+  G L  G    ++ + +  +
Sbjct: 929  SGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNM 988

Query: 276  SDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAV 322
               +     ++D  ++ G +  A  +   M  K +A  W  L+ G  +
Sbjct: 989  EPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRI 1036



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 151/316 (47%), Gaps = 13/316 (4%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           NT I  + E  +   AVEL      S +  D + Y  +L+  ++   ++ G+  HSV   
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSEL--DLNAYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERDLVAWNSVINGFASNGKPNEALT 230
           NG      +   LV MY + G +++  ++F+ ++S+  +  WN +++ +A  G   E++ 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LF++M   G+  + YT   +    A LG +   +R H  V+K+G      V N+L+  Y 
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           K G + +A ++F E+  R+ VSW++++ G  +NGF   ALE F +M I        T V 
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVN 659

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMP----KIEHFGCMVDLLGRAGLVKQAYEYIQN 406
            + AC++ G +  G     R     G+      ++     ++D+  + G +  A +  + 
Sbjct: 660 SVAACANVGSLSLG-----RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 407 MLMPPNAVIWRTLLGA 422
           M      V W +L+ A
Sbjct: 715 M-GQKTVVSWTSLIAA 729



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 21/240 (8%)

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+ I  F   G    A+ L R      ++ + Y+  S+   CAE   L  G+  H+ +  
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISS 479

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV-SWSTLVVGLAVNGFGKEALE 331
            G+     +   L+  Y  CG +   +R+F  +   N V  W+ ++   A  G  +E++ 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG------ 385
           LFK+M+  G      TF  +L   +  G V E     KR+   +G + K+  FG      
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGE----CKRI---HGCVYKL-GFGSYNTVV 591

Query: 386 -CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQL 442
             ++    ++G V  A++     L   + V W +++  C ++G  HSA+    +  +L++
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDE-LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV 650


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/635 (37%), Positives = 351/635 (55%), Gaps = 93/635 (14%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           P+  + P  S+++ C ++ Q        LKQ+H+ +I  G+ ++NP +   +I       
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQ--------LKQIHSQTICTGL-ISNPIVPAQIIAFCCKHE 65

Query: 91  F-PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              M YA  +F  +  PN F WN MI+GY+    P  AV +Y +M   G+ PD +TYPFL
Sbjct: 66  LGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFL 125

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           LK  ++   V+ G + H   ++ GF S VFVQN+L+H+Y+  G V  A  VF+  S+ D+
Sbjct: 126 LKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V WN +I+G+  + + +E++ LF EM    V P   T+VS+ SAC++L  L +G+R H  
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH-- 243

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG-LAVNGFGKE 328
                                        +  F +M +R+ VSW+ ++ G L VN F KE
Sbjct: 244 -----------------------------RNYFDKMPERDFVSWTAMIDGYLQVNRF-KE 273

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--GC 386
            L LF+EM+     P E T V +L AC+H G ++ G  + K   D+  I  KI+ F    
Sbjct: 274 VLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEI--KIDSFVGNA 330

Query: 387 MVDLLGRAGLVKQAY--------------------------------------------- 401
           ++D+    G V++A                                              
Sbjct: 331 LIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPD 390

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E I+NM + PN+++W +LLGAC +H    +AE+A   +L+LEP++   YVLL N+YA   
Sbjct: 391 EVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACN 450

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW  + EVR+ M+   +KKTPG SL+E+   V EF  GD+ HPQ++EI++ L E++  LK
Sbjct: 451 RWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLK 510

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GY P T  VF DI EEEKE A+  HSEK+AIAF L+++ PG  +R+VKNLR+C DCH 
Sbjct: 511 FAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHY 570

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             KL+SKVY+RE++VRDR+RFHHF+ G CSC+DYW
Sbjct: 571 VAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 344/559 (61%), Gaps = 35/559 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           M  A ++F ++ + +I +WNT+I GY ++    +A++ +S+M   S ++PD  T   +L 
Sbjct: 429 MELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV----------------- 194
           A + L  ++MG+Q HS  +R G      + N+L+  YA  G V                 
Sbjct: 489 ACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNV 548

Query: 195 ----------------KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                           K A ++F++M+ RD++AW ++I G+  NG+ +EA+ LFR M   
Sbjct: 549 ISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILI 608

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G EP+ +T+ ++ SACA L  L  G++ H    +     +V+V+NA++  Y++ G +  A
Sbjct: 609 GPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLA 668

Query: 299 QRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +RVF ++  ++  ++W++++V +A +G G++A+ LF+EM   G  P  +T+VGVL AC+H
Sbjct: 669 RRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAH 728

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G VD+G  Y+++M++E+GI+P++ H+ CMVDL  RAGL+ +A+E+IQ M + P+ V+W 
Sbjct: 729 AGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWG 788

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           +LL AC +  ++ +AE+A   LL ++P +SG Y  L+N+Y+   RW +   + +    + 
Sbjct: 789 SLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKG 848

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK  G S   +  +V  F   D  HPQ + I+   AE+ +++K  G+VP   +V  D++
Sbjct: 849 VKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVD 908

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           +E KE+ LS HSEK+AIAF L++T   T +R++KNLRVC DCH AIK ISK   REI+VR
Sbjct: 909 DELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVR 968

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFHHF+DG+CSC+DYW
Sbjct: 969 DATRFHHFRDGYCSCKDYW 987



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 74/401 (18%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F+ + D +  +W  MI G   S     AV+ +  M   G  P   T   +L + + 
Sbjct: 300 AHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAA 359

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS---------- 205
           +    +G + H   ++ G  S V V NS+++MY   G  + A  VFE M           
Sbjct: 360 MEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVM 419

Query: 206 ---------------------ERDLVAWNSVINGFASNGKPNEALTLF-REMASEGVEPD 243
                                ER +V+WN++I G+  NG    AL  F R +++  +EPD
Sbjct: 420 VSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPD 479

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR--- 300
            +T+ S+ SACA L  L +G++ H+Y+ + G+  +  + NAL+  Y+K G +  A+R   
Sbjct: 480 AFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMD 539

Query: 301 ------------------------------VFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
                                         +F  M  R+ ++W+ ++VG   NG   EA+
Sbjct: 540 QAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAM 599

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----FSYFKRMKDEYGIMPKIEHFGC 386
           ELF+ M + G  P   T   VL AC+    +D G        + ++++      +     
Sbjct: 600 ELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQ-----SVSVSNA 654

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           ++ +  R+G V  A      +      + W +++ A   HG
Sbjct: 655 IITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 10/266 (3%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F  NSL+ +YA  G + DA  VF  M +RD V+W  +I G   +G+  +A+  F +M SE
Sbjct: 282 FTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSE 341

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G  P  +T+ ++ S+CA + A  +GR+ H +V K+GLS  V V N++L  Y KCG    A
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M+ R+  SW+ +V      G  + A+ +F+ M     V       G     +  
Sbjct: 402 RAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGY----NQN 457

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV---KQAYEYIQNMLMPPNAVI 415
           G+      +F RM     + P       ++       ++   KQ + YI    MP ++ I
Sbjct: 458 GLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQI 517

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQ 441
              L+   + +  S   E AR  + Q
Sbjct: 518 MNALI---STYAKSGSVETARRIMDQ 540



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 92/255 (36%), Gaps = 78/255 (30%)

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI--------------I 295
           L   C      + GR  H +  K GL  +  + N LL +Y+  G+              I
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 296 IAAQR-----------------------VFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             A+R                       VF EM  R+AVSW+ ++VGL  +G   +A++ 
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS-----------------------------------H 357
           F +M   GF P + T   VL +C+                                    
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGK 394

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           CG  +   + F+RM+     +  +  +  MV L    G ++ A    +NM+   + V W 
Sbjct: 395 CGDAETARAVFERMQ-----VRSVSSWNVMVSLYTHQGRMELAVSMFENMV-ERSIVSWN 448

Query: 418 TLLGACTIHGHSAIA 432
           T++     +G   +A
Sbjct: 449 TIIAGYNQNGLDGMA 463


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 327/546 (59%), Gaps = 27/546 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMI-----RGYAESANPLLAVELYSKMHVSGI----------- 139
           AHN+F  + + N+ +W  MI     RGYA  A  L   ++  K+ ++G+           
Sbjct: 297 AHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADV--KISLTGVYAIDKLKLSNP 354

Query: 140 -------KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
                  +P+  T+  +L + +      +G Q HS+ I+  +E  VFV +SL+ MYA  G
Sbjct: 355 NRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDG 414

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            + +A  VFE + ERD+V+  ++I+G+A  G   EAL LFR +  EG++ +  T   + +
Sbjct: 415 KIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLT 474

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           A + L AL LG++ H +V +  +   V + N+L+D YSKCG +  ++R+F  M +R  +S
Sbjct: 475 ALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVIS 534

Query: 313 WSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           W+ ++VG + +G G+E L+LF  M E     P  VT + VL  CSH G+ D+G + F  M
Sbjct: 535 WNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDM 594

Query: 372 KD-EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
              +  + PK+EH+GC+VDLLGR+G V++A+E+I+ M   P A IW +LLGAC +H +  
Sbjct: 595 SSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVD 654

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           I E A   LL++EP ++G+YV+LSNLYA   RW +V  +R  M+K+ V K PG S +EL 
Sbjct: 655 IGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELD 714

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
             +  F   DRSHP+ EEI   + E++   K  GYVP    V  D++EE+KE  L  HSE
Sbjct: 715 QVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSE 774

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+A++F L+ +    P+RV+KNLR+C DCH   K ISKVY RE+ +RD++RFH    G C
Sbjct: 775 KLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKC 834

Query: 611 SCRDYW 616
           SC DYW
Sbjct: 835 SCEDYW 840



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 45/350 (12%)

Query: 48  LLQVCASSK----HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS-- 101
           + QVC        H+L +V        V  + P   +YLI     L+ P+      F+  
Sbjct: 148 IFQVCRRQANGVAHELARVAPSHASSHVYDDVPSCIRYLI-----LTLPIIIHQGCFNSK 202

Query: 102 ------HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
                 HV   N  T +T    +     PLL      +M + G       Y  +L     
Sbjct: 203 SMFLTRHVFPSNSRTLSTFTT-HIHLQQPLL------QMALHGFNMKFENYNAILNECVN 255

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
               R G++ H+  I+  +   VF++  L+ +Y     + DA  VF+ M ER++V+W ++
Sbjct: 256 KRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAM 315

Query: 216 INGFASNGKPNEALTLF---REMASEGV------------------EPDGYTMVSLFSAC 254
           I+ ++  G  ++AL LF    +++  GV                  EP+ +T  ++ ++C
Sbjct: 316 ISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSC 375

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
                  LGR+ H+ + K+   D+V V ++LLD Y+K G I  A+ VF  + +R+ VS +
Sbjct: 376 TSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCT 435

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            ++ G A  G  +EALELF+ ++  G     VT+ GVL A S    +D G
Sbjct: 436 AIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG 485


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/549 (42%), Positives = 319/549 (58%), Gaps = 33/549 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + + +  +WNTMI GYA++   L A  L+ +  V     D  T+  ++    +
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQ 197

Query: 156 ---LADVR-----MGEQTHSVA----------------IRNGFESL----VFVQNSLVHM 187
              L + R     M E+ +SV+                 R  FE++    V   N+++  
Sbjct: 198 NGMLDEARRVFDGMPEK-NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 256

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           YA  G +  A   F+ M +RD ++W ++I G+A +G   EAL LF EM  +G   +  T 
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 316

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
            S  S CAE+ AL LG++ H  V K GL     V NALL  Y KCG I  A  VF  + +
Sbjct: 317 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE 376

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           +  VSW+T++ G A +GFGKEAL LF+ M+  G +P +VT VGVL ACSH G+VD+G  Y
Sbjct: 377 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 436

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  M  +YGI    +H+ CM+DLLGRAG +  A   ++NM   P+A  W  LLGA  IHG
Sbjct: 437 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 496

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           ++ + E A   + ++EP +SG YVLLSNLYA   RW +V  +R  M    VKK PG+S V
Sbjct: 497 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 556

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+ N++  F +GD  HP+ + I+  L E+  K+K EGYV  T+ V  D+EEEEK   L Y
Sbjct: 557 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKY 616

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+A+AF ++    G P+RV+KNLRVC DCH A+K ISK+  R I++RD  RFHHF  
Sbjct: 617 HSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNG 676

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 677 GQCSCGDYW 685



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A N F  +   +  +W  +I GYA+S     A+ L+ +M   G + +  T+   L  
Sbjct: 263 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +++A + +G+Q H   ++ G ES  +V N+L+ MY   G++ DA  VFE + E+++V+W
Sbjct: 323 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 382

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           N++I G+A +G   EAL LF  M   G+ PD  TMV + SAC+  G +  G    ++   
Sbjct: 383 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 442

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGK 327
             G++ N      ++D   + G +  AQ + + M  + +A +W  L+    ++G    G+
Sbjct: 443 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 502

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACS 356
           +A ++  EME      G    +  LYA S
Sbjct: 503 KAAKMIFEMEPDN--SGMYVLLSNLYAAS 529



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 12/187 (6%)

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           + +++ A  +F+ M ERD+V+WN++++G+A NG   EA  +F EM  +    +  +   +
Sbjct: 43  YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGM 98

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            +A  + G +   RR    +++      +   N ++  Y K   ++ A+ +F  M +R+ 
Sbjct: 99  LAAYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE 154

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW+T++ G A NG   EA  LF+E  +        T+  ++      GM+DE    F  
Sbjct: 155 VSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 371 MKDEYGI 377
           M ++  +
Sbjct: 211 MPEKNSV 217


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 361/624 (57%), Gaps = 24/624 (3%)

Query: 1   MTSW--LMHSKQPSYEEISDLPCRVKSLYHSTPASQ----ENPITSVVRKCITLLQVCAS 54
           M SW  LM   Q +  E+  L      L+H + A+     ++   +V++ C  L Q+  +
Sbjct: 267 MVSWNTLMAGLQLNECELEAL-----QLFHESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNT 113
                +Q+H+  ++HG  L    +    +    S    ++ A NIFS      N+ +W  
Sbjct: 322 -----RQLHSCVLKHGFHLTGNVMTA--LADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +I G  ++ +  LAV L+S+M    + P+  TY  +LKA   +    +  Q H+  I+  
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTN 430

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           ++ + FV  +L+  Y+ FG  +DA  +F+++ ++D+VAW+++++  A  G    A  LF 
Sbjct: 431 YQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFN 490

Query: 234 EMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           +MA +G++P+ +T+ S+  ACA   A +  GR+ H    K    D + V++AL+  YS+ 
Sbjct: 491 KMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I +AQ VF     R+ VSW++++ G A +G+  +A+E F++ME  G     VTF+ V+
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
             C+H G+V EG  YF  M  ++ I P +EH+ CMVDL  RAG + +    I++M  P  
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAG 670

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
           A++WRTLLGAC +H +  + + +   LL LEP  S  YVLLSN+YA   +W    EVR+ 
Sbjct: 671 AMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKL 730

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M   +VKK  G S +++ N+V  F   D+SHP +++I+  L  I  +LK +GY P T  V
Sbjct: 731 MDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFV 790

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             DI E++KE  L  HSE++A+AF L+ T PGTP+++VKNLRVC DCH+ +K++S +  R
Sbjct: 791 LHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDR 850

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EI++RD SRFHHF  G CSC D+W
Sbjct: 851 EIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 156/320 (48%), Gaps = 6/320 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           + S    C+  L+ C S   ++  +Q+H   ++ G        G  L+   +     +  
Sbjct: 97  VDSATLSCV--LKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG-SVCE 153

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
              +F  +   N+ TW +++ G A +      + L+ +M   GI P+  T+  +L A++ 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G++ H+ +++ G  S VFV NSL++MYA  G V+DA  VF  M  RD+V+WN++
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTL 273

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G   N    EAL LF E  +   +    T  ++   CA L  LAL R+ H+ V K G 
Sbjct: 274 MAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF 333

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
               NV  AL D YSKCG +  A  +F      RN VSW+ ++ G   NG    A+ LF 
Sbjct: 334 HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFS 393

Query: 335 EMEIGGFVPGEVTFVGVLYA 354
            M     +P E T+  +L A
Sbjct: 394 RMREDRVMPNEFTYSAMLKA 413



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 158/327 (48%), Gaps = 8/327 (2%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N ++  YA     L  ++ +S     G+  D+ T   +LKA   + D  +GEQ H + ++
Sbjct: 68  NRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127

Query: 172 NGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
            G +   V    SLV MY   G V +  +VFE M ++++V W S++ G A     +E + 
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LF  M +EG+ P+ +T  S+ SA A  GAL LG+R H    K G   +V V N+L++ Y+
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA 247

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG++  A+ VF  M  R+ VSW+TL+ GL +N    EAL+LF E         + T+  
Sbjct: 248 KCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYAT 307

Query: 351 VLYACSHCGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           V+  C++     +  +  +++     ++G          + D   + G +  A       
Sbjct: 308 VIKLCANL----KQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT 363

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEI 434
               N V W  ++  C  +G   +A +
Sbjct: 364 TGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 3/214 (1%)

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V  N V+  +A  G   E L  F      GV  D  T+  +  AC  +    LG + H  
Sbjct: 65  VGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCL 124

Query: 270 VWKVGLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
             K G     V+   +L+D Y KCG +     VF  M K+N V+W++L+ G A      E
Sbjct: 125 CVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSE 184

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
            + LF  M   G  P   TF  VL A +  G +D G         ++G    +     ++
Sbjct: 185 VMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCRSSVFVCNSLM 243

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           ++  + GLV+ A + + N +   + V W TL+  
Sbjct: 244 NMYAKCGLVEDA-KSVFNWMETRDMVSWNTLMAG 276


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 320/557 (57%), Gaps = 15/557 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + V +++I  G  + N DLG                A  +F  +   N+ TWN M+ G  
Sbjct: 106 RNVMSWNILIGGCIKNGDLGS---------------ARELFDKMPTRNVATWNAMVAGLT 150

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  +++ +  M   G+ PD      + +  + L DV  G Q H+  +R+G +S + 
Sbjct: 151 NVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMC 210

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V NSL HMY   G + +   V   +    +V++N+ I G   NG    AL  F  M    
Sbjct: 211 VGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVE 270

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V PD  T VS  S C++L ALA G++ H  V K G+   V V  +L+  YS+CG +  ++
Sbjct: 271 VAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSE 330

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           RV+      +    S ++     +G G +A+ELFK+M  GG  P EVTF+ +LYACSH G
Sbjct: 331 RVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSG 390

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           + DEG  +F+ M   YG  P ++H+ C+VDLLGR+G + +A   I +M +  + VIW+TL
Sbjct: 391 LKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTL 450

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L AC    +  +AE     +++ +P+ S  YVLLSN+ A  +RW +V EVR+ M ++ ++
Sbjct: 451 LSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIR 510

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S VE   +V +F  GD+SHP+  EI   L E+  K++  GY P    VF D+E+E
Sbjct: 511 KEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDE 570

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EKE +L++HSEK+AIAF  +N   G P+RV+KNLRVC DCH+AIKLIS+V  REIVVRD 
Sbjct: 571 EKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDV 630

Query: 600 SRFHHFKDGHCSCRDYW 616
           SRFHHF+DG CSC DYW
Sbjct: 631 SRFHHFRDGRCSCGDYW 647



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 38/313 (12%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS- 237
           F  N+L+  YA  G +  A  +FE +S+R++++WN +I G   NG    A  LF +M + 
Sbjct: 78  FTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTR 137

Query: 238 ------------------------------EGVEPDGYTMVSLFSACAELGALALGRRAH 267
                                         EG+ PD + + S+F  CA L  +  GR+ H
Sbjct: 138 NVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVH 197

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            YV + G+  ++ V N+L   Y +CG +   + V R +     VS++T + G   NG  +
Sbjct: 198 AYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSE 257

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
            ALE F  M      P  VTFV  +  CS    + +G     ++  + G+   +     +
Sbjct: 258 GALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVI-KAGVDKVVPVITSL 316

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPK 445
           V +  R G +  + E + +     +  +   ++ AC  H  GH A+    +      EP 
Sbjct: 317 VHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPN 375

Query: 446 HSGDYVLLSNLYA 458
              +   L+ LYA
Sbjct: 376 ---EVTFLALLYA 385



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 28/213 (13%)

Query: 225 PNEALTLFREMASEGVEPDG---------YTMVSLFS----ACAELGALALGRRAHTYVW 271
           P EA   F  + S G   D          ++  SLFS    AC    A+ L R+ H +  
Sbjct: 13  PREAKDEFIRLCSSGRLKDALHHPFRGVLWSDASLFSHIFRACR---AIPLLRQLHAFAA 69

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             G + +    N LL  Y+  G +  A+ +F  + KRN +SW+ L+ G   NG    A E
Sbjct: 70  TSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARE 129

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF +M          T+  ++   ++ G+ ++   +F  M+ E G+ P  + FG      
Sbjct: 130 LFDKMPTRNV----ATWNAMVAGLTNVGLDEDSLQFFLAMRRE-GMHP--DEFGLGSVFR 182

Query: 392 GRAGLV-----KQAYEYIQNMLMPPNAVIWRTL 419
             AGL+     +Q + Y+    M  +  +  +L
Sbjct: 183 CCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSL 215


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 336/560 (60%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           KQ H ++++ G+     +  +Y+  A++ L    S    A  I   V   +IF +N ++ 
Sbjct: 143 KQCHGYALKSGL-----EFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVN 197

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G  +  +   AV++   +   GI+ +  TY  + +  + L D+ +G+Q H+  +++  + 
Sbjct: 198 GLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDC 257

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V++ +S++ MY   G+V      F+ +  R++V+W S+I  +  N    EAL LF +M 
Sbjct: 258 DVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKME 317

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            + + P+ YTM  LF++ A L AL LG + H    K GL  NV V NAL+  Y K G I+
Sbjct: 318 IDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDIL 377

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AAQ VF  M   N ++W+ ++ G + +G GKEAL +F++M   G  P  VTF+GV+ AC+
Sbjct: 378 AAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACA 437

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H  +VDEGF YF  +  ++ I+P +EH+ C+V LL R+G + +A  ++++  +  + V W
Sbjct: 438 HLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSW 497

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLL AC +H H          LLQLEP+  G Y+LLSN++A  +RW +V E+R+ M + 
Sbjct: 498 RTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRER 557

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            VKK PG S +E+ N    F   D  HP+   I+  + ++  K++  GYVP  +NV  DI
Sbjct: 558 NVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDI 617

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           E+E+K D LSYHSEK+A+A+ L+ T  G P+ V+KNLR+C DCH AIKLISKV +R IVV
Sbjct: 618 EDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVV 677

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF++G CSC DYW
Sbjct: 678 RDANRFHHFQNGCCSCGDYW 697



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 172/339 (50%), Gaps = 10/339 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLK 151
           +S A  +F  +   N+ +W+ ++ GY ++ NPL   EL+ KM V   I P+ +    +  
Sbjct: 73  VSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYV---IAT 129

Query: 152 AISKLADVRM---GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           AIS   D +M   G+Q H  A+++G E   +V+N+L+ +Y+    V  A ++   +   D
Sbjct: 130 AISS-CDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGND 188

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +  +N V+NG   +    EA+ + + + SEG+E +  T V++F  CA L  + LG++ H 
Sbjct: 189 IFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHA 248

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            + K  +  +V + ++++D Y KCG +++ +  F  ++ RN VSW++++     N F +E
Sbjct: 249 QMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEE 308

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL LF +MEI    P E T   +  + +    +  G     R  ++ G+   +     ++
Sbjct: 309 ALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHAR-AEKSGLKGNVMVGNALI 367

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            +  ++G +  A     NM    N + W  ++   + HG
Sbjct: 368 IMYFKSGDILAAQSVFSNMTC-CNIITWNAIITGHSHHG 405



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 7/278 (2%)

Query: 149 LLKAISKLADVRMGEQTH---SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           LLK  +   +++ G   H   ++   N  +S V   NSL+++Y     V  A K+F+ M 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGR 264
            R++V+W++++ G+  NG P E   LF++M   + + P+ Y + +  S+C +      G+
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC-DSQMYVEGK 143

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           + H Y  K GL  +  V NAL+  YSKC  + AA ++   +   +   ++ +V GL  + 
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHT 203

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
              EA+++ K +   G      T+V +   C+    +  G     +M     I   +   
Sbjct: 204 HMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS-DIDCDVYIG 262

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
             ++D+ G+ G V     +  + L   N V W +++ A
Sbjct: 263 SSIIDMYGKCGNVLSGRTFF-DRLQSRNVVSWTSIIAA 299



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 248 VSLFSACAELGALALGRRAHTYVWKVG---LSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           + L    A+   L  GR  H ++           VN  N+L++ Y KC  +  A+++F  
Sbjct: 23  IKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDS 82

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACS 356
           M +RN VSWS L+ G   NG   E  ELFK+M +     P E      + +C 
Sbjct: 83  MPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCD 135


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 314/524 (59%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A ++F  +   ++ +W  +I GYA++  P  A+ L   M  +  +P+  T+  LLKA
Sbjct: 111 VSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 170

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                   +GEQ H++A++  ++  V+V ++L+ MYA    +  A  VF+ +  ++ V+W
Sbjct: 171 TGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSW 230

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I GFA        L  F EM   G     +T  S+FSA A +GAL  GR  H ++ K
Sbjct: 231 NALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK 290

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V N +L  Y+K G ++ A++VF  M KR+ V+W+T++  LA  G GKEA+  
Sbjct: 291 SGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAH 350

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+E+   G    ++TF+ VL ACSH G+V EG  YF  MKD Y + P+I+H+   VDLLG
Sbjct: 351 FEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLG 409

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL+K+A  ++  M M P A +W  LLGAC +H ++ + + A   + +L+P  +G  VL
Sbjct: 410 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVL 469

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L N+YA   +W +   VR+ M    VKK P  S V++ N V  F   D +HP++ +I+ M
Sbjct: 470 LYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRM 529

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
             EI  ++K  GYVP T +V   I E+E+E  L YHSEKIA+AF L+N   G  +R++KN
Sbjct: 530 WEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKN 589

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+C DCH A K +SKV+ REIVVRD +RFHHF +G CSC DYW
Sbjct: 590 IRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 4/295 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           +H   + P    Y  ++ A ++  ++      H+   R+      F+ NSL+HMY   G 
Sbjct: 51  LHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGA 110

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V DA  VF+ M  RD+V+W  +I G+A N  P EA+ L  +M      P+G+T  SL  A
Sbjct: 111 VSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 170

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
               G  ++G + H    K    ++V V +ALLD Y++C  +  A  VF  +  +N VSW
Sbjct: 171 TGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSW 230

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-FSYFKRMK 372
           + L+ G A    G+  L  F EM+  GF     T+  +  A +  G +++G + +   +K
Sbjct: 231 NALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK 290

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
               +   + +   M+ +  ++G +  A +    M    + V W T+L A   +G
Sbjct: 291 SGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNTMLTALAQYG 342


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 318/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  +   ++  W+ MI  +A+S     A+E++ +M  + + P+  T+  +L+A + 
Sbjct: 201 AWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASAD 260

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  + + +  H  A++ G  + VFV N+L+  YA  G ++ + ++FE +S+R+ V+WN++
Sbjct: 261 IESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTI 320

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +   G    AL+LF  M    V+    T  S+  ACA L AL LG + H    K   
Sbjct: 321 IVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIY 380

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +V V NAL+D Y+KCG I  A+ +F  +  R+ VSW+ ++ G +++G G EA+++F  
Sbjct: 381 GQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNL 440

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P E+TFVGVL ACS+ G +DEG  YF  MK +YGI P +EH+ CMV L+GR+G
Sbjct: 441 MKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSG 500

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + QA ++I+++   P+ +IWR LLGAC IH    +  I+   +L+LEP+    +VLLSN
Sbjct: 501 NLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSN 560

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  +RW NV  VR+ M ++ VKK PG S +E    V  F + D SH   + I+ ML  
Sbjct: 561 IYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEF 620

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K +  GY P+   V  D+E++EKE  L  HSE++A+AF LV    G P+R++KNLR+
Sbjct: 621 LNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRI 680

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  IKLISK+  R+I+VRD +RFHHF++G CSC DYW
Sbjct: 681 CVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 189/367 (51%), Gaps = 10/367 (2%)

Query: 67  IRHGVPL-----NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           I HG  L     +N  +G  LI A  S+S  +S A  +F  +   ++ +W  MI  YAE+
Sbjct: 67  IVHGCVLKVGYGSNTFIGTALIDA-YSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A+E +S+M V+G KP+  T+  +LKA   L +   G+  H   ++  +E  ++V 
Sbjct: 126 DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVG 185

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
             L+ +Y   G   DA + F  M + D++ W+ +I+ FA +G+  +AL +F +M    V 
Sbjct: 186 VGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVI 245

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +T  S+  A A++ +L L +  H +  K GLS +V V+NAL+  Y+KCG I  +  +
Sbjct: 246 PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMEL 305

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  +  RN VSW+T++V     G G+ AL LF  M        EVT+  +L AC+    +
Sbjct: 306 FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAAL 365

Query: 362 DEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           + G   +    K  YG    +     ++D+  + G +K A  ++ +ML   + V W  ++
Sbjct: 366 ELGLQVHCLTAKTIYG--QDVAVGNALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWNAII 422

Query: 421 GACTIHG 427
              ++HG
Sbjct: 423 CGYSMHG 429



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 158/322 (49%), Gaps = 2/322 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + + N  ++ T+I GYA+S   + A EL++++H  G + +   +  +LK +  +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
             +G   H   ++ G+ S  F+  +L+  Y+  G V  A +VF+ +S +D+V+W  +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A N   +EAL  F +M   G +P+ +T   +  AC  L     G+  H  V K     +
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V   LL+ Y++CG    A R F +M K + + WS ++   A +G  ++ALE+F +M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
              +P + TF  VL A +    +D   +       + G+   +     ++    + G ++
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHAL-KAGLSTDVFVSNALMACYAKCGCIE 300

Query: 399 QAYEYIQNMLMPPNAVIWRTLL 420
           Q+ E  +  L   N V W T++
Sbjct: 301 QSMELFE-ALSDRNDVSWNTII 321


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 335/579 (57%), Gaps = 8/579 (1%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
           +S +R C +L      S    KQ+H  +++ G+  +   +G  L   + S    M  A  
Sbjct: 110 SSAIRACASL-----GSIEMGKQMHCLALKFGIG-SELFVGSNL-EDMYSKCGAMFDACK 162

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   +  +W  MI GY++      A+  + KM    +  D H     L A   L  
Sbjct: 163 VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKA 222

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVIN 217
            + G   HS  ++ GFES +FV N+L  MY+  G ++ A  VF + SE R++V++  +I+
Sbjct: 223 CKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID 282

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+    +  + L++F E+  +G+EP+ +T  SL  ACA   AL  G + H  V K+   +
Sbjct: 283 GYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDE 342

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  V++ L+D Y KCG++  A + F E+     ++W++LV     +G GK+A++ F+ M 
Sbjct: 343 DPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMV 402

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P  +TF+ +L  CSH G+V+EG  YF  M   YG++P  EH+ C++DLLGRAG +
Sbjct: 403 DRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRL 462

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           K+A E+I  M   PNA  W + LGAC IHG   + ++A   L++LEPK+SG  VLLSN+Y
Sbjct: 463 KEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIY 522

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A E++W +V+ VR  M    VKK PG+S V++G +   F   D SH +   I+  L  + 
Sbjct: 523 ANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLL 582

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            ++K  GYVP T++V  D+++  KE  L  HSE+IA+AF L++   G P+ V KNLRVC 
Sbjct: 583 DQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCV 642

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH AIK ISKV  R+I+VRD SRFHHF DG CSC DYW
Sbjct: 643 DCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 197/385 (51%), Gaps = 11/385 (2%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHG-VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++Q  A +K   + KQ+HA  I  G  P     L  +L+  + S    + +A  +F  + 
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTF--LTNHLV-NMYSKCGELDHALKLFDTMP 67

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+ +W  MI G ++++    A+  +  M + G  P    +   ++A + L  + MG+Q
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H +A++ G  S +FV ++L  MY+  G + DACKVFE M  +D V+W ++I+G++  G+
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  F++M  E V  D + + S   AC  L A   GR  H+ V K+G   ++ V NA
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 285 LLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           L D YSK G + +A  VF  +   RN VS++ L+ G       ++ L +F E+   G  P
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 307

Query: 344 GEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            E TF  ++ AC++   +++G   + + MK  +   P +     +VD+ G+ GL++ A +
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEHAIQ 365

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
                +  P  + W +L+     HG
Sbjct: 366 AFDE-IGDPTEIAWNSLVSVFGQHG 389



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 112/195 (57%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           DT+    +++  +K   +R G+Q H++ I  G+    F+ N LV+MY+  G +  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + M +R+LV+W ++I+G + N K +EA+  F  M   G  P  +   S   ACA LG++ 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           +G++ H    K G+   + V + L D YSKCG +  A +VF EM  ++ VSW+ ++ G +
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 322 VNGFGKEALELFKEM 336
             G  +EAL  FK+M
Sbjct: 184 KIGEFEEALLAFKKM 198



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A+   L  G++ H  +   G +    + N L++ YSKCG +  A ++F  M +RN VSW+
Sbjct: 16  AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWT 75

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GL+ N    EA+  F  M I G VP +  F   + AC+  G ++ G      +  +
Sbjct: 76  AMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG-KQMHCLALK 134

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           +GI  ++     + D+  + G +  A +  + M    + V W  +     I G+S I E 
Sbjct: 135 FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC-KDEVSWTAM-----IDGYSKIGEF 188

Query: 435 ARSTL 439
             + L
Sbjct: 189 EEALL 193


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 340/549 (61%), Gaps = 7/549 (1%)

Query: 74  NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
            +P L   LI     L   +  A  +F   +   I+ WN + R    +      ++LY +
Sbjct: 111 QDPFLATKLINMYSELD-SIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRR 169

Query: 134 MHVSGIKPDTHTYPFLLKA-ISKLADVRM---GEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           M+  G+  D  TY ++LKA ++  A V +   G + H   +R+GFE  V +  +L+ MYA
Sbjct: 170 MNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYA 229

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGYTM 247
            FG V +A +VF+ M  +++V+W+++I  ++ NGKP EAL LFR+M  E  +  P+  TM
Sbjct: 230 RFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTM 289

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           VS+  ACA L AL  G+  H Y+ + GL   + V +AL+  Y++CG +    RVF  M K
Sbjct: 290 VSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEK 349

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           R+ VSW++L+    ++GFG++A+++FKEM   G  P  ++FV VL ACSH G+V+EG   
Sbjct: 350 RDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVL 409

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F+ M   + I P +EH+ CMVDLLGRA  + +A + I +M + P   +W +LLG+C IH 
Sbjct: 410 FESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHC 469

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
           +  +AE A S L +LEP ++G+YVLL+++YA  + W  V+ V+  +    ++K PG S +
Sbjct: 470 NVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCI 529

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+  +++ F   D  +PQ E++HA+L +++ ++K +GYVP T+ V  D++ EEKE  +  
Sbjct: 530 EIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLG 589

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+A+AF L+N+  G  +R+ KNLR+C DCH   K ISK  +REI+VRD +RFH F+D
Sbjct: 590 HSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQD 649

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 650 GVCSCGDYW 658



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 18/325 (5%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I+   +  N   A+++ S+       P  HTY  L+ + ++   +  G   H   I 
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQEP----NPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           +G +   F+   L++MY+    + +A KVF+   +R +  WN++       G   E L L
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 232 FREMASEGVEPDGYTMVSLFSAC----AELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           +R M   GV  D +T   +  AC    A +  L  GR  H ++ + G   +V++   LLD
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLD 226

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGE 345
            Y++ G ++ A RVF +M  +N VSWS ++   + NG   EALELF++M  E    +P  
Sbjct: 227 MYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNS 286

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           VT V VL AC+    +++G     Y  R +    I+P +     +V +  R G ++  + 
Sbjct: 287 VTMVSVLQACAALAALEQGKLMHGYILR-RGLDSILPVV---SALVTVYARCGNLELGHR 342

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
             + M    + V W +L+ +  IHG
Sbjct: 343 VFERM-EKRDVVSWNSLISSYGIHG 366


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/521 (41%), Positives = 313/521 (60%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +W ++I GYA++  P  A+ L   M     KP+  T+  LLKA   
Sbjct: 105 ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            AD  +G Q H++A++  +   V+V ++L+ MYA  G +  A  VF+ +  ++ V+WN++
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL 224

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+GFA  G    AL  F EM   G E   +T  S+FS+ A LGAL  G+  H ++ K   
Sbjct: 225 ISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQ 284

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  N LLD Y+K G +I A++VF  +  ++ V+W+T++   A  G GKEA+  F+E
Sbjct: 285 KMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEE 344

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G    +VTF+ +L ACSH G+V EG  YF+ MK EY + P+I+HF  +V LLGRAG
Sbjct: 345 MRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAG 403

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  A  +I  M + P A +W  LL AC +H ++ + + A   + +L+P  SG  VLL N
Sbjct: 404 LLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYN 463

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W     VRR M    VKK P  S VE+ N V  F   D +HP+ EEI+ M  +
Sbjct: 464 IYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQ 523

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+KK++ EGYVP  + V   ++++E+E  L YHSEK+A+AF L+    G  +R++KN+R+
Sbjct: 524 ISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRI 583

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISKV+ REIVVRD +RFHHF +G CSC DYW
Sbjct: 584 CGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 7/327 (2%)

Query: 106 PNIFTWNTMIRGY-AESANPLLAVELYSK----MHVSGIKPDTHTYPFLLKAISKLADVR 160
           PN        R Y + +ANP+ A     +    +    + P    Y   + A ++  ++ 
Sbjct: 9   PNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLE 68

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
              + H+    + F    F+ NSL+H+Y   G V +A KVF+ M  +D+V+W S+I G+A
Sbjct: 69  DARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYA 128

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            N  P EA+ L   M     +P+G+T  SL  A        +GR+ H    K    ++V 
Sbjct: 129 QNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVY 188

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V +ALLD Y++CG++  A  VF ++  +N VSW+ L+ G A  G G+ AL  F EM   G
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
           F     T+  V  + +  G +++G      M      M        ++D+  ++G +  A
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAG-NTLLDMYAKSGSMIDA 307

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHG 427
            + + + +   + V W T+L A   +G
Sbjct: 308 RK-VFDRVDDKDLVTWNTMLTAFAQYG 333


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 314/524 (59%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A ++F  +   ++ +W  +I GYA++  P  A+ L   M  +  +P+  T+  LLKA
Sbjct: 8   VSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 67

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                   +GEQ H++A++  ++  V+V ++L+ MYA    +  A  VF+ +  ++ V+W
Sbjct: 68  TGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSW 127

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I GFA        L  F EM   G     +T  S+FSA A +GAL  GR  H ++ K
Sbjct: 128 NALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK 187

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V N +L  Y+K G ++ A++VF  M KR+ V+W+T++  LA  G GKEA+  
Sbjct: 188 SGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAH 247

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+E+   G    ++TF+ VL ACSH G+V EG  YF  MKD Y + P+I+H+   VDLLG
Sbjct: 248 FEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLG 306

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL+K+A  ++  M M P A +W  LLGAC +H ++ + + A   + +L+P  +G  VL
Sbjct: 307 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVL 366

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L N+YA   +W +   VR+ M    VKK P  S V++ N V  F   D +HP++ +I+ M
Sbjct: 367 LYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRM 426

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
             EI  ++K  GYVP T +V   I E+E+E  L YHSEKIA+AF L+N   G  +R++KN
Sbjct: 427 WEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKN 486

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+C DCH A K +SKV+ REIVVRD +RFHHF +G CSC DYW
Sbjct: 487 IRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G V DA  VF+ M  RD+V+W  +I G+A N  P EA+ L  +M      P+G+T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             SL  A    G  ++G + H    K    ++V V +ALLD Y++C  +  A  VF  + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            +N VSW+ L+ G A    G+  L  F EM+  GF     T+  +  A +  G +++G
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 178


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/600 (38%), Positives = 342/600 (57%), Gaps = 39/600 (6%)

Query: 52  CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM-SYAHNIFSHVQDPNIFT 110
           C +  H  KQ+HA   R+ +  ++  +   L +       P+ +Y H +FS V  PN F 
Sbjct: 21  CTTLNHA-KQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFL 79

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           ++ +IR YA +     ++ LY+ M  + + P + T+  L    S L +  +G Q H  A 
Sbjct: 80  YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQLHLHAF 136

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---------------------- 208
             GF + ++V N+++HMY  FG +  A KVF+ M  RD                      
Sbjct: 137 LFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACE 196

Query: 209 ---------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
                    +VAW S++ G++ N  P +AL  FR+M   GV  D  T+V   SACA+LG 
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV 256

Query: 260 LALGR--RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
                  R      + G   NV V +AL+D YSKCG +  A  VF+ M++ N  S+S+++
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMI 316

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           VG AV+G  + A++LF EM   G  P  VTFVG+  ACSH GMV++G   F  MK+ YG+
Sbjct: 317 VGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGV 376

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P  +H+ CM DLLGRAG +++A + +Q M M PN  +W  LLGA  IHG+  +AEIA  
Sbjct: 377 SPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASR 436

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF-EF 496
           +L +LEP + G+Y+LLS  YA   +W +V  VR+ M +++++K PG S VE  N +  EF
Sbjct: 437 SLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEF 496

Query: 497 FMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF 556
           F GD  HP+  EI   L ++ ++LK  GY P+  +V  DI++E K   L  HSEK+A+A+
Sbjct: 497 FAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAY 556

Query: 557 MLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            L++T  G+ ++++KNLR+C DCH+ +   SK+  R+I+VRD  RFHHF +G CSC ++W
Sbjct: 557 GLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 324/523 (61%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +   + + N+ +W  MI  Y+++ +   A+ ++++M  S  KP+  T+  +L +  +
Sbjct: 106 ARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIR 165

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + + +G+Q H + ++  ++S +FV +SL+ MYA  G +K+A ++FE + ERD+V+  ++
Sbjct: 166 ASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAI 225

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+A  G   EAL +F  + SEG+ P+  T  SL +A + L  L  G++AH +V +  L
Sbjct: 226 IAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRREL 285

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N+L+D YSKCG +  A+R+F  M +R A+SW+ ++VG + +G G+E LELF+ 
Sbjct: 286 PFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRL 345

Query: 336 MEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGR 393
           M     V P  VT + VL  CSH  M D G + F  M   EYG  P  EH+GC+VD+LGR
Sbjct: 346 MRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGR 405

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A+E+I+ M   P A +  +LLGAC +H    I E     L+++EP+++G+YV+L
Sbjct: 406 AGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVIL 465

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   RW +V  VR  M+++ V K PG S ++    +  F   DR+HP+ EE+ A +
Sbjct: 466 SNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKM 525

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            EI+ K+K  GYVP    V  D++EE+KE  L  HSEK+A+ F L+ T  G P+RV KNL
Sbjct: 526 KEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNL 585

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K+ SKV+ RE+ +RD++RFH   DG CSC DYW
Sbjct: 586 RICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 13/339 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M   H  FS    P  +   T++      +N  L  E   +M + G +   H Y  LL A
Sbjct: 5   MRLIHRSFS--SSPTNYVLQTILPISQLCSNGRLQ-EALLEMAMLGPEMGFHGYDALLNA 61

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                 +R G++ H+  I+  +    +++  L+  Y     ++DA KV + M E+++V+W
Sbjct: 62  CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I+ ++  G  +EALT+F EM     +P+ +T  ++ ++C     L LG++ H  + K
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                ++ V ++LLD Y+K G I  A+ +F  + +R+ VS + ++ G A  G  +EALE+
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS----YFKRMKDEYGIMPKIEHFGCMV 388
           F  +   G  P  VT+  +L A S   ++D G        +R    Y ++        ++
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN-----SLI 296

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           D+  + G +  A     NM     A+ W  +L   + HG
Sbjct: 297 DMYSKCGNLSYARRLFDNM-PERTAISWNAMLVGYSKHG 334


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/546 (40%), Positives = 330/546 (60%), Gaps = 15/546 (2%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           PA  + P+   +  C +L          L Q+HA +++ G+  +   + + L       +
Sbjct: 15  PAKPKGPLLPHLPHCTSL--------RALAQLHAAAVKSGLGAHPALVTRLLTLCTKQGA 66

Query: 91  FP--MSYAHNIFSHVQDPNIFTW-NTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTY 146
            P  ++YA  +F  +  P    W NT++RGYA S++    A  + ++M   G+ PDT+T+
Sbjct: 67  APAHLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTF 126

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             LLKA +       G Q H VA++ G     +V  +L++MYA  G  + A  +F  +  
Sbjct: 127 VSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPN 186

Query: 207 RD-LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            D +V++N++I     + +P EAL LFREM ++G++P   T+ S+ SACA LGAL LGR 
Sbjct: 187 GDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRW 246

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H YV K GL   V VN AL+D Y KCG +  A  VF+ M  R+  +WS ++V  A + +
Sbjct: 247 IHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSY 306

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G+EA+ LF+EM+  G  P  VTF+GVLYACSH GMV EG  YF  M+ EYGI+P I+H+G
Sbjct: 307 GREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVPGIKHYG 365

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C+ DLL R+G +++AY++I  + + P A++WRTLL AC  HG   + +     +L+L+  
Sbjct: 366 CVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERILELDDT 425

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
           H  DYV+ SNL A   +W  +  VR+ M ++ V K PG S +E+ NRV EFF GD  HPQ
Sbjct: 426 HGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEFFAGDGRHPQ 485

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +++   M+ ++ ++LKL GYVP T  VF  ++ EEEK  +L YHSEK+AI+F L+NT+PG
Sbjct: 486 SQDARRMVDQVIEQLKLVGYVPNTSQVFHVEMGEEEKATSLRYHSEKLAISFGLLNTSPG 545

Query: 565 TPVRVV 570
           T +RVV
Sbjct: 546 TTLRVV 551


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/552 (37%), Positives = 335/552 (60%), Gaps = 35/552 (6%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK-MHVSGIKPDTHTYPFLLKAISKLAD 158
           F  + + +I +WN+MI G  +      A++ +S  +  + +KPD  +    L A + L  
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK 255

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA---------------------------- 190
           +  G+Q H   +R  F++   V N+L+ MYA                             
Sbjct: 256 LSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALL 315

Query: 191 -----FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
                 G +  A ++F  + + D+VAW ++I G+  NG  N+A+ +F+ M SEG  P+ +
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+ ++ SA + + +L  G++ H    + G + + +V NAL   Y+K G I  A++VF  +
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435

Query: 306 RK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           R+ R+ VSW+++++ LA +G G+EA+ELF++M   G  P  +T+VGVL AC+H G+V++G
Sbjct: 436 RQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQG 495

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            SYF  MK+ + I P + H+ CMVDL GRAGL+++AY++++NM M P+ + W +LL +C 
Sbjct: 496 RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCK 555

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           ++ +  +A++A   LL +EP +SG Y  L+N+Y+   +W +  ++R+ M    VKK  G 
Sbjct: 556 VYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGL 615

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S V++ N+   F + D  HPQ +EI+ M+ +I K++K  G+ P TE+V  D+E E K+  
Sbjct: 616 SWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQI 675

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEK+AIAF +++T   T +R++KNLRVC DCH AIK ISK+  REI+VRD +RFHH
Sbjct: 676 LRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHH 735

Query: 605 FKDGHCSCRDYW 616
           FKDG CSC+DYW
Sbjct: 736 FKDGSCSCKDYW 747



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 183/419 (43%), Gaps = 70/419 (16%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   +  +W T+I GY +      A++++  M    + P   T   +L + + 
Sbjct: 60  AHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAA 119

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV--------------- 200
                +G++ HS  ++ G  + V V NSL++MYA  G +K A  V               
Sbjct: 120 TGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAM 179

Query: 201 ----------------FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPD 243
                           FEL+SERD+V+WNS+I G   +G  NEAL  F  +  +  ++PD
Sbjct: 180 ISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPD 239

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKV------------------------------ 273
            +++ S  SACA L  L+ G++ H Y+ +                               
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 274 --GLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
             G+SD +V    ALL+ Y K G I  A+++F  ++  + V+W+ ++VG   NG   +A+
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVD 389
           E+FK M   G  P   T   +L A S    ++ G   +   ++    + P + +   +  
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTT 417

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKH 446
           +  +AG +  A +    +    + V W +++ A   H  G  AI    +   L ++P H
Sbjct: 418 MYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDH 476



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF+ ++DP++  W  MI GY ++     A+E++  M   G +P++ T   +L A S 
Sbjct: 327 ARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSS 386

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNS 214
           +  +  G+Q H+ AIR+G      V N+L  MYA  G +  A KVF L+ + RD V+W S
Sbjct: 387 VTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTS 446

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I   A +G   EA+ LF +M + G++PD  T V + SAC   G +  GR     +  V 
Sbjct: 447 MIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVH 506

Query: 275 LSDNVNVNNA-LLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
             D    + A ++D + + G++  A +    M  + + ++W +L+
Sbjct: 507 KIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 30/277 (10%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            F  N+++  YA  G ++ A +VF+L+  RD V+W ++I G+   G+  +A+ +F +M  
Sbjct: 41  TFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           + V P  +T+ ++ ++CA  G+  +G++ H++V K+GL   V V N+LL+ Y+K G +  
Sbjct: 101 DKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKM 160

Query: 298 AQRVFREMRKRNAVSWSTLV--------VGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           A+ VF  M+ RN  SW+ ++        V LA+  F     EL  E +I       V++ 
Sbjct: 161 AKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQF-----ELLSERDI-------VSWN 208

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL-----LGRAGLVKQAYEYI 404
            ++  C+  G  +E   +F  +  +  + P  + F     L     L +    KQ + YI
Sbjct: 209 SMIAGCNQHGFDNEALQFFSSILKDTSLKP--DRFSLASALSACANLEKLSFGKQIHGYI 266

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
              +   +  +   L+   +++  S   EIAR  + Q
Sbjct: 267 VRTMFDASGAVGNALI---SMYAKSGGVEIARRIIEQ 300



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+GL+ +V + N L++ Y+K G  + A  +F EM  +   SW+T++ G A  G  ++A +
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDE 374
           +F  +     V   V++  ++   +  G  ++    F  M KD+
Sbjct: 63  VFDLIP----VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDK 102


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/537 (40%), Positives = 321/537 (59%), Gaps = 5/537 (0%)

Query: 85  AIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           A+VSL   + +   A ++F  +   ++  W+ M+  YA + +P  A+ L+ +M + G+ P
Sbjct: 116 ALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAP 175

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           +  T    L A + L D+R G   H      G +S V V  +LV++Y   G ++ A + F
Sbjct: 176 NKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAF 235

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
             + E+++VAW+++   +A N +  +A+ +   M  EG+ P+  T VS+  ACA + AL 
Sbjct: 236 GQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALK 295

Query: 262 LGRRAH--TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
            GRR H   +V   GL  +V V  AL++ YSKCG +  A  +F ++   + V W++L+  
Sbjct: 296 QGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIAT 355

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            A +G  ++ALELF+ M + G  P  +TF  VL+ACSH GM+D+G  +F     ++GI P
Sbjct: 356 NAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFP 415

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
           + EHFGCMVDLLGRAG +  + + + +M   P+ V W   LGAC  + +   A  A   L
Sbjct: 416 EAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENL 475

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
            QL+P+    YVLLSN+YA   RW +V  +R+ M      K  G S +E+ +RV EF  G
Sbjct: 476 FQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISG 535

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           D  HP+  EIHA L  +TK +K  GYVP TE V  D+++E KE  + YHSEK+A+AF L+
Sbjct: 536 DLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALL 595

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            T  G+P+RVVKNLRVC DCH A K ISK+ +REIVVRD +RFH F++G CSC DYW
Sbjct: 596 TTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 172/352 (48%), Gaps = 10/352 (2%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +Q  N+F+W  M+  +AE+ +       +  M + GI P        L A +   +
Sbjct: 32  VFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDARE 91

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           + +G       +  G E    VQ +LV +Y   GH  DA  VF  MS RD+VAW++++  
Sbjct: 92  ITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAA 151

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG P EAL LFR+M  +GV P+  T+VS   ACA LG L  G   H  V   G+   
Sbjct: 152 YARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSG 211

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V  AL++ Y KCG I AA   F ++ ++N V+WS +    A N   ++A+ +   M++
Sbjct: 212 VVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL 271

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAG-- 395
            G  P   TFV VL AC+    + +G    +R+     G+   +     +V++  + G  
Sbjct: 272 EGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNL 331

Query: 396 -LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEP 444
            L    ++ I ++    + V+W +L+     HG +  A+    R  L  L+P
Sbjct: 332 ALAGNMFDKIAHL----DLVLWNSLIATNAQHGQTEKALELFERMRLEGLQP 379



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 4/245 (1%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F+ N L+ +Y       DA  VF  +  +++ +W  ++  FA N   +     FR M  +
Sbjct: 11  FLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQ 70

Query: 239 GVEPDGYTMVSLF-SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           G+ P G   +S+F SAC +   + +GR     +   G+ +   V  AL+  Y K G    
Sbjct: 71  GINP-GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTD 129

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  VF  M  R+ V+WS +V   A NG  +EAL LF++M++ G  P +VT V  L AC+ 
Sbjct: 130 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 189

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G +  G    +R++ + GI   +     +V+L G+ G ++ A E     ++  N V W 
Sbjct: 190 LGDLRSGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAAEAF-GQIVEKNVVAWS 247

Query: 418 TLLGA 422
            +  A
Sbjct: 248 AISAA 252


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/529 (42%), Positives = 327/529 (61%), Gaps = 11/529 (2%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE-----LYSKM-HVSGIKPDTHTYPF 148
           YA  +F  + +P  F +N++IR  + S +   +       LY +M H     P++ T  F
Sbjct: 76  YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-R 207
           +LKA + L +   G+Q H+ A  +G E   +VQ  L+++YA    V  A  VF+ M E +
Sbjct: 136 VLKACTALGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           +LVAW+S+I G++  G  NEAL LFR+M + GV PD  TMVS+ SACA+ GAL LG+  H
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVH 252

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            ++ + G++ ++ ++ AL+D Y+KCG+I  A+ VF  M +R+  +WS ++VGLA++G  +
Sbjct: 253 AFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAE 312

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           +AL LF  M      P  VTFVGVL AC+H G+VD+G  Y+  M+ E GI   +E++GCM
Sbjct: 313 DALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQ-ELGIEASMENYGCM 371

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           VDLL R+GL+ +A+ ++  M + PN+VIWR LL A        I E+A   L +LEP++ 
Sbjct: 372 VDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQNP 431

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
            +YVLLSNLYA   +W  V+ +R+ M    V    G S +E+   + +F + D SHP+ +
Sbjct: 432 ENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIK 491

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
           +I  +L EI  ++   G+ P T  V  D+ EEEKE AL  HSE++AIA+ L+ T     +
Sbjct: 492 KIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPHVI 551

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVVKNLR C DCH   K+ISK Y REI+VRDR RFH F  G CSC D+W
Sbjct: 552 RVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRFIGGSCSCNDFW 600


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/524 (40%), Positives = 315/524 (60%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A ++F  +   ++ +W  +I GYA++  P  A+ L   M  +  +P   T+   LKA
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                   +GEQ H++A++   +  V+V ++L+ MYA    +  A +VF+ +  ++ V+W
Sbjct: 173 AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSW 232

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I GFA  G     L  F EM   G     +T  S+FSA A +GAL  GR  H ++ K
Sbjct: 233 NALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIK 292

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G      V N +L  Y+K G ++ A++VF  + +R+ V+W+T++   A  G GKEA+  
Sbjct: 293 SGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAH 352

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+E+   G    ++TF+ VL ACSH G+V EG  YF  MKD Y + P+I+H+   VDLLG
Sbjct: 353 FEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLG 411

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAGL+K+A  ++  M M P A +W  LLGAC +H ++ I + A   + +L+P+ +G  VL
Sbjct: 412 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVL 471

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L N+YA   +W +   VR+ M    VKK P  S VE+ N V  F   D +HP++EEI+ M
Sbjct: 472 LYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRM 531

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
             E+  ++K  GYVP T+ V   I+E+E+E  L YHSEKIA+AF L+N   G  +R++KN
Sbjct: 532 WEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKN 591

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +R+C DCH A + +S+V+ REIVVRD +RFHHF +G CSC DYW
Sbjct: 592 IRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 112/226 (49%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P    Y  ++ A ++  ++      HS   R+      F+ NSL+HMY   G V DA 
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
            VF+ +  RD+V+W  +I G+A N  P EAL L  +M      P G+T  S   A    G
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
              +G + H    K  L ++V V +ALLD Y++C  +  A RVF  +  +N VSW+ L+ 
Sbjct: 178 GRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIA 237

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G A  G G+  L  F EM+  GF     T+  V  A +  G +++G
Sbjct: 238 GFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 8/228 (3%)

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S+ +ACA+   LA  R  H+++ +  L+ +  + N+L+  Y KCG +  A+ VF  +  R
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW+ L+ G A N    EAL L  +M    F P   TF   L A   CG    G    
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIG-EQM 185

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             +  +Y +   +     ++D+  R   +  A   + + L   N V W  L+      G 
Sbjct: 186 HALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR-VFDWLDSKNEVSWNALIAGFARKGD 244

Query: 429 S-----AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ-RWLNVQEVR 470
                   AE+ R+        +S  +  L+ + A EQ RW++   ++
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIK 292



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 11/163 (6%)

Query: 60  KQVHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           + VHA  I+ G  L     N  LG Y      + S  M  A  +F  V   ++ TWNTM+
Sbjct: 284 RWVHAHMIKSGQKLTAFVANTILGMY------AKSGSMVDARKVFDRVDQRDLVTWNTML 337

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
             +A+      AV  + ++   GI+ +  T+  +L A S    V+ G+Q   +      E
Sbjct: 338 TAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVE 397

Query: 176 SLVFVQNSLVHMYAAFGHVKDACK-VFELMSERDLVAWNSVIN 217
             +    S V +    G +K+A   VF++  E     W +++ 
Sbjct: 398 PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG 440


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 316/521 (60%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +++ +  TW TM+ G  ++     A++++ +M   G+  D +T+  +L A   
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G+Q H+   R  +E  VFV ++LV MY+    V+ A  VF  M  +++++W ++
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAM 349

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  NG   EA+ +F EM  +G++PD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 350 IVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 409

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V V+NAL+  Y KCG I  A R+F EM   + VSW+ LV+G A  G  KE ++LF++
Sbjct: 410 RPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEK 469

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF+GVL ACS  G+VD+G SYF  M+ ++ I+P  +H+ CM+DL  R+G
Sbjct: 470 MLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSG 529

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +KQA E+I+ M   P+A  W TLL AC + G   I + A   LL+L+P++   YVLL +
Sbjct: 530 WLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCS 589

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A +  W +V ++RR M   +VKK PG S ++  N+V  F   D+SHP +  I+  L  
Sbjct: 590 MHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQW 649

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + EK   LS+HSEK+AIAF L+   P  P+R+VKNLRV
Sbjct: 650 LNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRV 709

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+VRD  RFH F +G CSC D+W
Sbjct: 710 CVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 186/391 (47%), Gaps = 36/391 (9%)

Query: 63  HAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESA 122
           HA  +   +P  N   G  L+ A+      +     +F+ +   +  ++N ++ G++ + 
Sbjct: 64  HARRVFDAMPGRNLVTGNSLLSALARAGL-VRDMERLFTSLPQRDAVSYNALLAGFSRAG 122

Query: 123 NPLLAVELYSKM--HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
               A   Y  +    +G++P   T   ++   S L D  +G Q H   +R GF +  F 
Sbjct: 123 AHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFT 182

Query: 181 QNSLVHMYAAFGHVKDA------------------------CK-------VFELMSERDL 209
            + LV MYA  G + DA                        CK       +FE + ERD 
Sbjct: 183 GSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDS 242

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           + W +++ G   NG  +EAL +FR M +EGV  D YT  S+ +AC  L AL  G++ H Y
Sbjct: 243 ITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY 302

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + +    DNV V +AL+D YSKC  +  A+ VFR M  +N +SW+ ++VG   NG G+EA
Sbjct: 303 ITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEA 362

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + +F EM+  G  P + T   V+ +C++   ++EG + F  +    G+ P +     +V 
Sbjct: 363 VRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVT 421

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           L G+ G ++ A+     M    + V W  L+
Sbjct: 422 LYGKCGSIEDAHRLFDEMSF-HDQVSWTALV 451



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 72/312 (23%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S  ++ N+L+  YA+ G +  A +VF+ M  R+LV  NS+++  A  G   +   LF  +
Sbjct: 44  SPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSL 103

Query: 236 ASE---------------------------------GVEPDGYTMVSLFSACAELGALAL 262
                                               GV P   TM  +    + LG  AL
Sbjct: 104 PQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRAL 163

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM----------------- 305
           GR+ H  + ++G        + L+D Y+K G I  A+RVF EM                 
Sbjct: 164 GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLR 223

Query: 306 --------------RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
                          +R++++W+T+V GL  NG   EAL++F+ M   G    + TF  +
Sbjct: 224 CKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSI 283

Query: 352 LYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           L AC     ++EG    +Y  R   E  +         +VD+  +   V+ A E +   +
Sbjct: 284 LTACGALAALEEGKQIHAYITRTCYEDNVFVG----SALVDMYSKCRSVRLA-EAVFRRM 338

Query: 409 MPPNAVIWRTLL 420
           M  N + W  ++
Sbjct: 339 MWKNIISWTAMI 350


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/585 (37%), Positives = 351/585 (60%), Gaps = 14/585 (2%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E+   SV++ C  L ++        +Q+H   +++G  L + ++   L+ A  S    M 
Sbjct: 295 ESSFASVIKLCANLKEL-----RFTEQLHCSVVKYGF-LFDQNIRTALMVA-YSKCTAML 347

Query: 95  YAHNIFSHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            A  +F  +    N+ +W  MI G+ ++     AV+L+S+M   G++P+  TY  +L A+
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
             ++      + H+  ++  +E    V  +L+  Y   G V++A KVF  + ++D+VAW+
Sbjct: 408 PVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWK 272
           +++ G+A  G+   A+ +F E+   G++P+ +T  S+ + CA   A +  G++ H +  K
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  ++ V++ALL  Y+K G I +A+ VF+  R+++ VSW++++ G A +G   +AL++
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 583

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FKEM+        VTF+GV  AC+H G+V+EG  YF  M  +  I P  EH  CMVDL  
Sbjct: 584 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +++A + I+NM  P  + IWRT+L AC +H  + +  +A   ++ ++P+ S  YVL
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 703

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA    W    +VR+ M +  VKK PG+S +E+ N+ + F  GDRSHP  ++I+  
Sbjct: 704 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMK 763

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L +++ +LK  GY P T  V  DI++E KE  L+ HSE++AIAF L+ T  G+P+ ++KN
Sbjct: 764 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKN 823

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHF-KDGHCSCRDYW 616
           LRVC DCHL IKLI+K+  REIVVRD +RFHHF  DG CSC D+W
Sbjct: 824 LRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 12/302 (3%)

Query: 83  IYAIVSLSFPMSY-AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           IY   ++S    Y AHN+F      +  ++ +++ G++       A  L+  +H  G++ 
Sbjct: 32  IYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM 91

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D   +  +LK  + L D   G Q H   I+ GF   V V  SLV  Y    + KD  KVF
Sbjct: 92  DCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVF 151

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
           + M ER++V W ++I+G+A N   +E LTLF  M +EG +P+ +T  +     AE G   
Sbjct: 152 DEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G + HT V K GL   + V+N+L++ Y KCG +  A+ +F +   ++ V+W++++ G A
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKR 370
            NG   EAL +F  M +      E +F  V+  C+           HC +V  GF + + 
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN 331

Query: 371 MK 372
           ++
Sbjct: 332 IR 333



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 165/311 (53%), Gaps = 5/311 (1%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L+V A+   +L  +Q+H   I+ G  L++  +G  L+   +  S        +F  ++
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGF-LDDVSVGTSLVDTYMKGS-NFKDGRKVFDEMK 155

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + N+ TW T+I GYA ++     + L+ +M   G +P++ T+   L  +++      G Q
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+V ++NG +  + V NSL+++Y   G+V+ A  +F+    + +V WNS+I+G+A+NG 
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL +F  M    V     +  S+   CA L  L    + H  V K G   + N+  A
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335

Query: 285 LLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           L+  YSKC  ++ A R+F+E+    N VSW+ ++ G   N   +EA++LF EM+  G  P
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP 395

Query: 344 GEVTFVGVLYA 354
            E T+  +L A
Sbjct: 396 NEFTYSVILTA 406


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 316/523 (60%), Gaps = 1/523 (0%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAI 153
           YA  IF  +   N  +W+ MI GY  S     A+EL+ +M +   + P   T   +L+A 
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           +KL D+  G + H   I+ G    + + N+L+ MYA  G + DA + F+ M+ +D V+++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFS 382

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++++G   NG    AL++FR M   G++PD  TM+ +  AC+ L AL  G  +H Y+   
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G + +  + NAL+D YSKCG I  A+ VF  M + + VSW+ +++G  ++G G EAL LF
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 502

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            ++   G  P ++TF+ +L +CSH G+V EG  +F  M  ++ I+P++EH  CMVD+LGR
Sbjct: 503 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 562

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AGL+ +A+ +I+NM   P+  IW  LL AC IH +  + E     +  L P+ +G++VLL
Sbjct: 563 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLL 622

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   RW +   +R T     +KK PG S +E+   V  F  GD+SH Q  +I+  L
Sbjct: 623 SNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKL 682

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+  ++K  GY      VF D+EEEEKE  L YHSEK+AIAF ++N   G P+ V KNL
Sbjct: 683 EELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNL 742

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH AIK ++ +  REI VRD +RFHHFK+G C+C D+W
Sbjct: 743 RVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 201/394 (51%), Gaps = 19/394 (4%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSH 102
           LL+ C  SK   + K++H   ++     N  +    +++ +  L    +    A  +F  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLK-----NTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + +P++  WN +IR YA +     A++LY  M   G++P+ +TYPF+LKA S L  +  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            + HS A   G ES VFV  +LV  YA  G + +A ++F  MS RD+VAWN++I G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G  ++A+ L  +M  EG+ P+  T+V +     E  AL  G+  H Y  +    + V V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGF 341
             LLD Y+KC  ++ A+++F  M  RN VSWS ++ G   +   KEALELF +M +    
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 342 VPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            P  VT   VL AC+    +  G     Y  ++    G +  I     ++ +  + G++ 
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL----GXVLDILLGNTLLSMYAKCGVID 364

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            A  +   M  P ++V +  ++  C  +G++A+A
Sbjct: 365 DAIRFFDXM-NPKDSVSFSAIVSGCVQNGNAAVA 397



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 112/209 (53%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           + Y  LL+A  +   +   ++ H   ++N   +   V + L  +Y +   V  A ++F+ 
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +    ++ WN +I  +A NG  + A+ L+  M   GV P+ YT   +  AC+ L A+  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H++    GL  +V V  AL+DFY+KCGI++ AQR+F  M  R+ V+W+ ++ G ++ 
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G   +A++L  +M+  G  P   T VGVL
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S+A  +F+ +   +I +WN MI GY      + A+ L+  +   G+KPD  T+  LL +
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 153 IS 154
            S
Sbjct: 524 CS 525


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 330/561 (58%), Gaps = 9/561 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           K VH F +R G   N      ++  A+V +      M  A  +F  + + N+ TWN ++ 
Sbjct: 142 KSVHCFWVRGGFEGN-----VFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVS 196

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY++      A++L++ M   G+  D +T   L+ A   +  +++G   H   IR G+E+
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYEN 256

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              ++ +L+ +Y +   V DA +VF  MS +D+ AW  ++ GF+S    + A+  F +M 
Sbjct: 257 DKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML 316

Query: 237 S-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             + ++ D   ++ + S+C+  GAL  GRR H    K   ++N+ V +A++D Y+ CG +
Sbjct: 317 GIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNL 376

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+R F  M +++ V W+ ++ G  +NG+G +A++LF +M+  G  P E TFV VLYAC
Sbjct: 377 EDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYAC 436

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH GMV EG   F  M     ++P ++H+ C++D+LGRAG +  AY +I NM   P+  +
Sbjct: 437 SHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDV 496

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           + TLLGAC IHG+  +       + ++EP  +G YVLLSN+YA    W  V+  R ++  
Sbjct: 497 YSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRS 556

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           +R+KK PG S +E+   ++ F  G++ HPQ  +I  +L  +  K+K  GYVP T  +  D
Sbjct: 557 KRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQD 616

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           + ++ K+D L +HSEK+AIAF L+ T P T +R+ KNLR C DCH A K +SKV+ R +V
Sbjct: 617 VSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLV 676

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           ++D +RFH F+DG CSCRDYW
Sbjct: 677 IKDANRFHVFQDGVCSCRDYW 697



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 213/432 (49%), Gaps = 20/432 (4%)

Query: 30  TPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL 89
           +P +Q  P  S++RK   L          L+Q+HA  I  G+  +N  L   L+ A V  
Sbjct: 21  SPLAQ--PHASILRKLKDL--------KPLQQIHAQIITSGLT-HNTFLSNSLMNAYVYC 69

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
              ++ A  IF H    N+ +W  +I G A++   + A++++ +M +   KP+  T   +
Sbjct: 70  GL-LADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSV 128

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A + L  +R+ +  H   +R GFE  VFV+ +LV MY+ FG +  A ++FE MSER++
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V WN++++G++ +G   EA+ LF  M  +G+  D YT++SL  A   +G L +G   H +
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + + G  ++ ++  AL+D Y     +  A RVF EM  ++  +W+ ++ G +       A
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 330 LELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           ++ F +M  I       +  +G+L +CSH G + +G      +  +      I     ++
Sbjct: 309 IKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFVGSAVI 367

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH--SAIAEIARSTLLQLEPKH 446
           D+    G ++ A  +   M    + V W  ++    ++G+   AI    +     L+P  
Sbjct: 368 DMYANCGNLEDAKRFFYGM-GEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDE 426

Query: 447 SGDYVLLSNLYA 458
           S     +S LYA
Sbjct: 427 S---TFVSVLYA 435


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 316/519 (60%), Gaps = 1/519 (0%)

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
            A  +F  + D  I +W + I  Y        A+ L+ +M   G++PD +T   ++ A + 
Sbjct: 625  ATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 684

Query: 156  LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             + +  G   HS  I+NG  S + V N+L++MYA  G V++A  VF  +  +D+V+WN++
Sbjct: 685  SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTM 744

Query: 216  INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            I G++ N  PNEAL LF +M  +  +PD  TM  +  ACA L AL  GR  H ++ + G 
Sbjct: 745  IGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGY 803

Query: 276  SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              +++V  AL+D Y+KCG+++ AQ +F  + K++ +SW+ ++ G  ++GFG EA+  F E
Sbjct: 804  FSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 863

Query: 336  MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
            M I G  P E +F  +L ACSH G+++EG+ +F  M++E G+ PK+EH+ C+VDLL R G
Sbjct: 864  MRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMG 923

Query: 396  LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             + +AY++I++M + P+  IW  LL  C IH    +AE     + +LEP ++  YV+L+N
Sbjct: 924  NLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLAN 983

Query: 456  LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            +YA  ++W  V+++R+ M K   K+ PG S +E+G +   F  G+  HPQ + I  +L +
Sbjct: 984  VYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRK 1043

Query: 516  ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
            +T +++ E Y      V  + ++ EKE     HSEK A+AF ++N  PG  VRV KN RV
Sbjct: 1044 LTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRV 1103

Query: 576  CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
            C DCH   K +SK   REIV+RD +RFHHFKDG CSCRD
Sbjct: 1104 CGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 210/413 (50%), Gaps = 15/413 (3%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++LQ+CA  K     K+VH+  I +G+ ++   LG  L++  V+    +     IF  + 
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEA-LGAKLVFMYVNCG-DLVQGRKIFDKIM 431

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +  +F WN ++  YA+  N   +V L+ KM   G+  + +T+  +LK  + L  V+  ++
Sbjct: 432 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR 491

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   ++ GF S   V NSL+  Y  FG V+ A  +F+ +SE D+V+WNS+ING   NG 
Sbjct: 492 VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 551

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
               L +F +M   GVE D  T+VS+  A A +G L+LGR  H +  K   S+ V  +N 
Sbjct: 552 SGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNT 611

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           LLD YSKCG +  A  VF +M     VSW++ +      G   +A+ LF EM+  G  P 
Sbjct: 612 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671

Query: 345 EVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
             T   +++AC+    +D+G    SY  +     G+   +     ++++  + G V++A 
Sbjct: 672 IYTVTSIVHACACSSSLDKGRDVHSYVIK----NGMGSNLPVTNALINMYAKCGSVEEA- 726

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
             + + +   + V W T++G    +  +++   A    L ++ +   D + ++
Sbjct: 727 RLVFSKIPVKDIVSWNTMIGG---YSQNSLPNEALELFLDMQKQFKPDDITMA 776



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 126/253 (49%), Gaps = 2/253 (0%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N  I  + E  +   A+EL +K      +   ++Y  +L+  ++   +  G++ HSV I 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKS--KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           NG      +   LV MY   G +    K+F+ +    +  WN +++ +A  G   E+++L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F++M   GV  + YT   +    A LG +   +R H YV K+G   N  V N+L+  Y K
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            G + +A  +F E+ + + VSW++++ G  VNGF    LE+F +M I G      T V V
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 352 LYACSHCGMVDEG 364
           L A ++ G +  G
Sbjct: 578 LVAWANIGNLSLG 590


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/643 (35%), Positives = 349/643 (54%), Gaps = 77/643 (11%)

Query: 45  CITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---I 99
           C TLLQ  +S  SK + KQ+HA  +R  +P  +P L    +  I+S+   ++  H+   I
Sbjct: 8   CKTLLQNPSSVKSKSQAKQLHAQILRTSLP--SPSL----LSTILSIYSNLNLLHDSLLI 61

Query: 100 FSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           F+ +  P     W ++IR Y      L ++  + +M  SG  PD + +P +LK+ + + D
Sbjct: 62  FNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKD 121

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF---------------GHVKDAC----- 198
           +R GE  H   IR G    ++  N+L++MY+ F               G   D       
Sbjct: 122 LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK 181

Query: 199 ---------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                    KVFE+M +RD+V+WN+VI+G A NG   +AL + REM +  + PD +T+ S
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +    AE   L  G+  H Y  + G   +V + ++L+D Y+KC  +  + RVF  + + +
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHD 301

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIG------------------------------ 339
            +SW++++ G   NG   E L+ F++M I                               
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 340 ------GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
                 G  P  V F+ VL ACSH G+VDE + YF  M  +Y I+P +EH+  + DLLGR
Sbjct: 362 YIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGR 421

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            G +++AYE+I +M + P   +W TLL AC +H +  +AE     L  ++P++ G YVLL
Sbjct: 422 VGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLL 481

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   RW + +++R  M  + +KK P  S +E+ N+V  F  GD+SHP  + I+  L
Sbjct: 482 SNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEAL 541

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             + ++++ EGYV  T  V  D+EEE+K   L  HSE++AI F +++T  GT +RV KNL
Sbjct: 542 KVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNL 601

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH A K ISK+  REIVVRD SRFHHFKDG CSC D+W
Sbjct: 602 RVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/529 (42%), Positives = 328/529 (62%), Gaps = 6/529 (1%)

Query: 93   MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLK 151
            MS    IF+ +   ++ +WN+++   A S  P+  +V+++S M  SG+ P+  T+   L 
Sbjct: 535  MSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLA 594

Query: 152  AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLV 210
            A++ L+ + +G+Q HSV +++G      V N+L+  YA  G V    ++F  MS  RD +
Sbjct: 595  ALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAI 654

Query: 211  AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            +WNS+I+G+  NG   EA+     M       D  T   + +ACA + AL  G   H + 
Sbjct: 655  SWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFG 714

Query: 271  WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
             +  L  +V V +AL+D YSKCG I  A +VF  M ++N  SW++++ G A +G G++AL
Sbjct: 715  LRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKAL 774

Query: 331  ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            E+F+EM+  G  P  VTFV VL ACSH G+V+ G  YF+ M+D YGI+P+IEH+ C++DL
Sbjct: 775  EIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEHYSCVIDL 833

Query: 391  LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI---ARSTLLQLEPKHS 447
            LGRAG + +  EY++ M M PN +IWRT+L AC    H A  ++   A   LL+LEP++ 
Sbjct: 834  LGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNP 893

Query: 448  GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
             +YVL S  +A   RW +  + R  M    VKK  G S V L + V  F  GDRSHP T+
Sbjct: 894  VNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTK 953

Query: 508  EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
            EI+  L  + +K++  GYVP TE V  D+EEE KE+ L YHSEK+A+AF+L  ++ G P+
Sbjct: 954  EIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPI 1013

Query: 568  RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            R++KNLRVC DCH A + IS++  R+I++RD  RFHHFKDG CSC DYW
Sbjct: 1014 RIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 8/339 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A +I+  +++ N  T N +I G  +  +   A E++     S    +  TY  LL AI++
Sbjct: 332 AKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSA-AVNVDTYVVLLSAIAE 390

Query: 156 LA----DVRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            +     +R G + H+  +R G     + V N LV+MYA  G +  AC+VF+LM  RD +
Sbjct: 391 FSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRI 450

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +WN++I     NG    A+  +  M    + P  +  +S  S+CA LG LA G++ H   
Sbjct: 451 SWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDA 510

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG-KEA 329
            K GL  + +V+NAL+  Y +CG +     +F  M   + VSW++++  +A +     E+
Sbjct: 511 VKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITES 570

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           +++F  M   G VP +VTFV  L A +   +++ G      M  ++G+         ++ 
Sbjct: 571 VQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVML-KHGVTEDNAVDNALMS 629

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
              ++G V         M    +A+ W +++     +GH
Sbjct: 630 CYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGH 668



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 12/287 (4%)

Query: 60  KQVHAFSIRHGVPLNNP-DLGKYLIYAIVSLSFPMSYAHNIFSHVQD-PNIFTWNTMIRG 117
           KQ+H+  ++HGV  +N  D      YA    S  +     +FS +    +  +WN+MI G
Sbjct: 606 KQIHSVMLKHGVTEDNAVDNALMSCYA---KSGDVDSCERLFSRMSGRRDAISWNSMISG 662

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           Y  + +   A++    M  S    D  T+  +L A + +A +  G + H+  +R+  ES 
Sbjct: 663 YIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESD 722

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V V+++LV MY+  G +  A KVF  MS+++  +WNS+I+G+A +G   +AL +F EM  
Sbjct: 723 VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQE 782

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G  PD  T VS+ SAC+  G +  G      +   G+   +   + ++D   + G +  
Sbjct: 783 SGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDK 842

Query: 298 AQRVFREM-RKRNAVSWSTLVVGL------AVNGFGKEALELFKEME 337
            Q   + M  K N + W T++V        A    G EA  +  E+E
Sbjct: 843 IQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELE 889



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 22/353 (6%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGI- 139
           +Y   S+  P+  A  +F      ++ TWN ++  YA+  + +    L+  M    SGI 
Sbjct: 214 MYGSCSVGPPI-LAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIE 272

Query: 140 -KPDTHTYPFLLKAISKLADVRMG--EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
            +P  HT+  L+ A + L+   +G  +Q     +++G  S ++V ++LV  +A  G + +
Sbjct: 273 LRPTEHTFGSLITA-TYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDE 331

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF---REMASEGVEPDGYTMVSLFSA 253
           A  ++  + ER+ V  N +I G         A  +F   R+ A+  V+    T V L SA
Sbjct: 332 AKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD----TYVVLLSA 387

Query: 254 CAELG----ALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
            AE       L  GR  H +V + G +   + V+N L++ Y+KCG I  A RVF+ M  R
Sbjct: 388 IAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEAR 447

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + +SW+T++  L  NG+ + A+  +  M      P     +  L +C+  G++  G    
Sbjct: 448 DRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAG-QQL 506

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
                ++G+         +V + G  G + + +E I N +   + V W +++G
Sbjct: 507 HCDAVKWGLYLDTSVSNALVKMYGECGRMSECWE-IFNSMSAHDVVSWNSIMG 558



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 166/356 (46%), Gaps = 19/356 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTHTYPFLL 150
           +  A  +F  +   N  +W  +I G+  S  P  A  L+  M     G +P + T+  +L
Sbjct: 116 LDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVL 175

Query: 151 KAISKLADVRMG--EQTHSVAIRNGFESLVFVQNSLVHMYAA--FGHVKDACKVFELMSE 206
           +A       R+G   Q H +  +  F S   V N+L+ MY +   G    A +VF+    
Sbjct: 176 RACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPV 235

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASE--GVE--PDGYTMVSLFSACAELGALAL 262
           RDL+ WN++++ +A  G      TLFR M  +  G+E  P  +T  SL +A   L + +L
Sbjct: 236 RDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITA-TYLSSCSL 294

Query: 263 GRRAHTYV--WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           G     +V   K G S ++ V +AL+  +++ G++  A+ ++  +++RNAV+ + L+ GL
Sbjct: 295 GLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGL 354

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY----G 376
                G+ A E+F        V  + T+V +L A +     ++G    + +         
Sbjct: 355 VKQQHGEAAAEIFMGARDSAAVNVD-TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGH 413

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           I  KI     +V++  + G + +A    Q ++   + + W T++ A   +G+   A
Sbjct: 414 IYRKIAVSNGLVNMYAKCGAIDKACRVFQ-LMEARDRISWNTIITALDQNGYCEAA 468



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 20/287 (6%)

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           E  H   ++ G    +F+ N LV+ YA    +  A +VF+ M  R+ V+W  +I+G   +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 223 GKPNEALTLFREMASE--GVEPDGYTMVSLFSACAELGALALG--RRAHTYVWKVGLSDN 278
           G P +A  LFR M  E  G  P  +T  S+  AC + G   LG   + H  V K   + N
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 279 VNVNNALLDFYSKC--GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
             V NAL+  Y  C  G  I AQRVF     R+ ++W+ L+   A  G       LF+ M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 337 EIGG----FVPGEVTFVGVLYAC--SHC--GMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           +         P E TF  ++ A   S C  G++D+ F   + +K   G    +     +V
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLF--VRVLKS--GCSSDLYVGSALV 320

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS-AIAEI 434
               R G++ +A + I   L   NAV    L+       H  A AEI
Sbjct: 321 SAFARHGMLDEAKD-IYLGLKERNAVTLNGLIAGLVKQQHGEAAAEI 366


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 284/438 (64%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V N+LV MYA  G+   A  VFE M+++D+++W S++ G   NG   EAL LF EM   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+ PD   + ++ SACAEL  L  G++ H    K GL  +++V+N+L+  Y+KCG I  A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  M  ++ ++W+ L+VG A NG G+E+L  + +M   G  P  +TF+G+L+ACSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V+ G SYF+ M++ YGI P  EH+ CM+DLLGR+G + +A E +  M + P+A +W+ 
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC +HG+  + E A + L +LEPK++  YVLLSNLY+   +W    + RR M    V
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            K PG S +E+ ++V  F   DRSHP+T EI++ + EI   +K  GYVP       D++E
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           E KE  L+YHSEK+A+AF L+   PG P+R+ KNLR+C DCH A+K +S V+ R +++RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 599 RSRFHHFKDGHCSCRDYW 616
            + FHHF++G CSC DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 5/255 (1%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            YA ++F  + D ++ +W +++ G   + +   A+ L+ +M + GI PD      +L A 
Sbjct: 19  DYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 78

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++L  +  G+Q H+  +++G  S + V NSLV MYA  G ++DA KVF+ M  +D++ W 
Sbjct: 79  AELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWT 138

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++I G+A NG+  E+L  + +M + GV+PD  T + L  AC+  G +  GR     + +V
Sbjct: 139 ALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEV 198

Query: 274 -GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGKE 328
            G+         ++D   + G ++ A+ +  +M  + +A  W  L+    V+G    G+ 
Sbjct: 199 YGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGER 258

Query: 329 ALELFKEMEIGGFVP 343
           A     E+E    VP
Sbjct: 259 AANNLFELEPKNAVP 273


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/594 (36%), Positives = 333/594 (56%), Gaps = 7/594 (1%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           V  L  S  A     +  ++R+C       A +  + +++H + +  G  L+ P     L
Sbjct: 29  VDLLEQSGAAGGTGDLEQLIRRCAG-----AKALEEGRRIHRW-MDSGT-LDRPRFLSNL 81

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +  +      +  A  +F  +Q  N+F+W  ++ G+ +S   + A++L+ +M   G  PD
Sbjct: 82  LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPD 141

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
                  + +      +  G + HS A   G +S +   N++++MY   G + +A  VF 
Sbjct: 142 RVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFT 201

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            M E+++++W+++I  F  N   +EAL  F+ M  EG+E D  T VS+  A   +GAL L
Sbjct: 202 RMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALEL 261

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G+  H  +   GL  ++ V N L++ Y KCG    A+ VF  M ++N VSW+ ++     
Sbjct: 262 GKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NG  +EAL LF  M++ G  P ++TFV +LY CSH G   +  S+F  M+ ++GI P+  
Sbjct: 322 NGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREV 381

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
           HFGC++D+LGR+G +++A E IQ M +P +AV+W +LL AC  H     A  A     Q 
Sbjct: 382 HFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQR 441

Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
           EP+ +  Y++LSNLYA  ++W    +VR+ M +  V+K  G S +E+  +V EF  GD  
Sbjct: 442 EPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSI 501

Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
           HP    I   L  +  +++++GY P  + V   +EEEEK++ L YHSEK+A+AF + +T 
Sbjct: 502 HPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTP 561

Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           P TP+ +VKNLRVC+DCH AIK IS V  R I VRD +RFHHF  G CSC DYW
Sbjct: 562 PRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 153/331 (46%), Gaps = 6/331 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AV+L  +   SG    T     L++  +    +  G + H        +   F+ N LV 
Sbjct: 28  AVDLLEQ---SGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVD 84

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G + +A +VF+ M  +++ +W  ++ GF  +G+  EA+ LF  M  EG  PD   
Sbjct: 85  MYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVA 144

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           ++    +C    AL+ GR  H+     G+  ++   NA+++ Y KCG I  A  VF  M 
Sbjct: 145 LLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP 204

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           ++N +SWST++     N    EAL  FK M+  G     +T+V VL A +  G ++ G +
Sbjct: 205 EKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKA 264

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
              R+    G+   I     +V++ G+ G    A +   +M+   N V W  +L A   +
Sbjct: 265 LHVRIV-YAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMV-EKNVVSWNAMLAAYGQN 322

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           G S  A +A    + LE     D   ++ LY
Sbjct: 323 GRSREA-LALFDSMDLEGVRPNDITFVTILY 352


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 339/561 (60%), Gaps = 12/561 (2%)

Query: 60  KQVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+H+ ++R G+  ++    G   +YA + +   M +A  +F  +   N+ +W  +I GY
Sbjct: 266 QQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGY 325

Query: 119 AESA---NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            +S    N ++A  L+ +M    I+P+  TY  LLKA + L+D   G Q H+  ++    
Sbjct: 326 VQSGVQENNVMA--LFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIA 383

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
            +  V N+LV MYA  G +++A K F+ + E ++++ +  +    +N   +  +    E 
Sbjct: 384 HVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKI----EG 439

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             +GV    +T  SL SA A +G L  G++ H    K G   +  ++N+L+  Y++CG +
Sbjct: 440 MDDGVST--FTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYL 497

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A R F EM+  N +SW++++ GLA +G+ K+AL +F +M + G  P +VT++ VL AC
Sbjct: 498 EDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSAC 557

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G+V EG  +F+ M+ ++G++P++EH+ C+VDLL R+GLV++A ++I  M    +A++
Sbjct: 558 SHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALV 617

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W+TLL AC  +G++ I EIA + ++ LEP+    YVLLSNLYA    W  V  +R  M  
Sbjct: 618 WKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRD 677

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + + K  G S +++GN + EF  GD SHP   +I+A L  + +++K  GYVP T  V  D
Sbjct: 678 KNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHD 737

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           + EE KE  L  HSEKIA+AF L+ T+   P+R+ KNLRVCADCH AIK ISK   REI+
Sbjct: 738 MSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREII 797

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RD +RFH  KDG CSC +YW
Sbjct: 798 LRDSNRFHRMKDGICSCGEYW 818



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 5/200 (2%)

Query: 170 IRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           ++ GF  + V V  +L+ M+A  G +  A +VF+ + ER  V W  +I  +   G  ++ 
Sbjct: 171 LKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKV 230

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LF  M  +G EPDGY+M S+ SAC ELG++ LG++ H+   ++GL  +  V+  L+D 
Sbjct: 231 VELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDM 290

Query: 289 YSKCGI---IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK-EALELFKEMEIGGFVPG 344
           Y+K  +   +  A++VF+ M + N +SW+ L+ G   +G  +   + LF+EM      P 
Sbjct: 291 YAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPN 350

Query: 345 EVTFVGVLYACSHCGMVDEG 364
            +T+  +L AC++    D G
Sbjct: 351 HITYSNLLKACANLSDQDSG 370



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE- 206
           LL + ++  D+R+G   H   +R+   ++   V NSL+ MY+  G V+ A +VF+ M   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELGALALGR 264
           RDLV+W ++ +  A NG   E+L L  EM   G+ P+ +T+ +   AC   EL  LA G 
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLA-GG 164

Query: 265 RAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
               +V K G    +V+V  AL+D +++ G ++AAQRVF  + +R +V W+ L+      
Sbjct: 165 VVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQA 224

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G   + +ELF  M   GF P   +   ++ AC+  G V  G
Sbjct: 225 GCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLG 265


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 345/569 (60%), Gaps = 12/569 (2%)

Query: 47  TLLQVCASSKHKLKQV--HAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFS 101
           ++L VCA S   +  V  H   ++HG+     D   ++  A++++      +  A  +F 
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGL-----DSDVFVSNALINMYSKFGRLQDAQMVFD 281

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            ++  ++ +WN++I  Y ++ +P  A+  +  M + GI+PD  T   L    S+L+D R+
Sbjct: 282 QMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRI 341

Query: 162 GEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                   IR  + +  V + N+LV+MYA  G++  A  VF+ +  +D ++WN+++ G+ 
Sbjct: 342 SRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYT 401

Query: 221 SNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            NG  +EA+  +  M       P+  T VS+  A + +GAL  G + H  + K  L  +V
Sbjct: 402 QNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V   L+D Y KCG +  A  +F E+ +  +V W+ ++  L ++G G+EAL+LFK+M   
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE 521

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
                 +TFV +L ACSH G+VDEG   F  M+ EYGI P ++H+GCMVDLLGRAG +++
Sbjct: 522 RVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEK 581

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AYE ++NM + P+A IW  LL AC I+G++ +  +A   LL+++ ++ G YVLLSN+YA 
Sbjct: 582 AYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYAN 641

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            ++W  V +VR       ++KTPG S V +G++   F+ G+++HP+  EI+  L  ++ K
Sbjct: 642 TEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAK 701

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GYVP    V+ DIEE+EKE  L+ HSE++AIAF +++T P +P+R+ KNLRVC DC
Sbjct: 702 MKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDC 761

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           H A K IS++  REIVVRD +RFHHFKDG
Sbjct: 762 HNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 184/341 (53%), Gaps = 12/341 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  AH +F  +   ++ +WN MI G+ ++ N   A+ + ++M   G+K DT T   +L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++  DV  G   H   +++G +S VFV N+L++MY+ FG ++DA  VF+ M  RDLV+W
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I  +  N  P+ AL  F+ M   G+ PD  T+VSL S  ++L    + R    +V +
Sbjct: 292 NSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIR 351

Query: 273 VG-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
              L  +V + NAL++ Y+K G +  A  VF ++ +++ +SW+TLV G   NG   EA++
Sbjct: 352 REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAID 411

Query: 332 LFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            +  M E    +P + T+V ++ A SH G + +G     ++     +   +    C++DL
Sbjct: 412 AYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDL 470

Query: 391 LGRAGLVKQA----YEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G+ G ++ A    YE  ++  +P     W  ++ +  IHG
Sbjct: 471 YGKCGRLEDAMSLFYEIPRDTSVP-----WNAIIASLGIHG 506



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 17/300 (5%)

Query: 60  KQVHA----FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           K++HA    F     + L+   +  Y+ +  +SLS       + F ++   NIF+WN++I
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLS------RSTFDYIHKKNIFSWNSII 92

Query: 116 RGYAESANPLLAV----ELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
             Y        A+    +L+S      ++PD +T+P +LKA   L D   G++ H    +
Sbjct: 93  SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFK 149

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFE  VFV  SLVH+Y+ +G +  A KVF  M  +D+ +WN++I+GF  NG    AL +
Sbjct: 150 MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
              M  EGV+ D  T+ S+   CA+   +  G   H +V K GL  +V V+NAL++ YSK
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            G +  AQ VF +M  R+ VSW++++     N     AL  FK M++GG  P  +T V +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           +V   ++ H++ +  G    + +   L+++Y   G +  +   F+ + ++++ +WNS+I+
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 218 GFASNGKPNEALT----LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
            +   GK +EA+     LF       + PD YT   +  AC    +L  G++ H  V+K+
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKM 150

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G  D+V V  +L+  YS+ G++  A +VF +M  ++  SW+ ++ G   NG    AL + 
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
             M+  G     +T   +L  C+    V  G
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVING 241


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 319/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  W+ MI  YA+S     A+E++ +M    + P+  T   LL+A + 
Sbjct: 300 ALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACAS 359

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+++G Q H   ++ G +  VFV N+L+ MYA  G ++++ ++F        V+WN+V
Sbjct: 360 LVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTV 419

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+   G   +AL LF++M    V+    T  S+  ACA + AL  G + H+   K   
Sbjct: 420 IVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIY 479

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N  V NAL+D Y+KCG I  A+ VF  +R+ + VSW+ ++ G +V+G   EAL+ F+ 
Sbjct: 480 DKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFES 539

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P +VTFVG+L ACS+ G++D G +YFK M +EY I P  EH+ CMV LLGR+G
Sbjct: 540 MLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSG 599

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + +  +   P+ ++WR LL AC IH    +  I+   +L++EP+    +VLLSN
Sbjct: 600 HLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSN 659

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  +RW NV  +R +M ++ ++K PG S +E   RV  F +GD SHP T+ I+ ML  
Sbjct: 660 IYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEW 719

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K + EGYVP   +V  D+E+ +KE  L  HSE++A+A+ L+ T   +P+R++KNLR+
Sbjct: 720 LNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRI 779

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CADCH AIKLISK+  R+I++RD +RFHHF +G CSC DYW
Sbjct: 780 CADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 185/354 (52%), Gaps = 10/354 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +W  M+  Y E+     +++L+S+M + G KP+  T+  +LKA   
Sbjct: 199 ARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVG 258

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L    +G+  H  A +  +   +FV   L+ +Y   G V DA +VFE M + D++ W+ +
Sbjct: 259 LEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFM 318

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +A + +  EA+ +F  M    V P+ +T+ SL  ACA L  L LG + H +V KVGL
Sbjct: 319 IARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGL 378

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV V+NAL+D Y+KCG +  + ++F E      VSW+T++VG    G G++AL LFK+
Sbjct: 379 DMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKD 438

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY----FKRMKDEYGIMPKIEHFGCMVDLL 391
           M        EVT+  VL AC+    ++ G        K + D+  ++        ++D+ 
Sbjct: 439 MLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN-----ALIDMY 493

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            + G +K A   + +ML   + V W  ++   ++HG    A     ++L+ E K
Sbjct: 494 AKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECK 546



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 15/333 (4%)

Query: 28  HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPL----NNPDLGKYLI 83
           HS+P        S+++ CI     CA+ K+    +H   I+ G  L    NN  L  Y+ 
Sbjct: 37  HSSPEFNTYIYGSLLQSCIRNGD-CATGKY----LHCEIIKKGNCLDLFANNILLNFYVK 91

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
           Y     S P   A  +F  + D N  ++ T+I+GY++      A+ L+S++   G + + 
Sbjct: 92  YD----SLP--DAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNP 145

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
             +  +LK +      ++G   H+   + GF+S  FV  +L+  Y+  G+ + A +VF+ 
Sbjct: 146 FVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDA 205

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +  +D+V+W  ++  +  N    E+L LF  M   G +P+ +T  S+  AC  L    +G
Sbjct: 206 IEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVG 265

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           +  H   +K    + + V   L+D Y K G +  A +VF EM K + + WS ++   A +
Sbjct: 266 KAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQS 325

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              +EA+E+F  M  G  +P + T   +L AC+
Sbjct: 326 EQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 10/223 (4%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFS 101
           +LLQ CAS        Q+H   ++ G+     D+  ++  A++ +        N   +FS
Sbjct: 352 SLLQACASLVDLQLGNQIHCHVVKVGL-----DMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
              +    +WNT+I GY ++ N   A+ L+  M    ++    TY  +L+A + +A +  
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G Q HS++++  ++    V N+L+ MYA  G++KDA  VF+++ E D V+WN++I+G++ 
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSV 526

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           +G   EAL  F  M     +PD  T V + SAC+  G L  G+
Sbjct: 527 HGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/524 (43%), Positives = 317/524 (60%), Gaps = 18/524 (3%)

Query: 106 PNIFTWNTMIRGYAESANP-----LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
           P    +N  +RG A S +P     LLA  L         + D  +  F LKA ++ +D  
Sbjct: 78  PATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAF 137

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
              Q H++ +R G  + V +  +L+  YA  G +  A +VF+ MS RD+  WN+++ G A
Sbjct: 138 ATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLA 197

Query: 221 SNGKPNEALTLFREMASE------GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
              +PN AL LFR +A          EP+  T+V+  SACA+LGAL  G  AH +   +G
Sbjct: 198 QGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIG 257

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALEL 332
              NV V NAL+D YSKCG +  A  VF  ++   R  VS++  +  L+++G G++AL+L
Sbjct: 258 AVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKL 317

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F EM      P EVT++ VL  C+H G+VD+G   F  M+    + P ++H+G +VDLLG
Sbjct: 318 FDEMP-ARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLG 372

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A++ I +M  P + V+W+TLLGA  +HG+  +AE+A + L  L     GDYVL
Sbjct: 373 RAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVL 432

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA + RW++V  VR TM    VKK PG S  E+   + +F  GD+ H +  EI+  
Sbjct: 433 LSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRA 492

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L EI  K+   GY P T NV  DI EEEK+ ALSYHSEK+AIAF L++T PG  +RV+KN
Sbjct: 493 LDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKN 552

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH+  KLISK Y R I++RDR+RFH F+DG CSCRDYW
Sbjct: 553 LRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 337/562 (59%), Gaps = 19/562 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           KQ+H   ++ G  ++     K+++ ++VS+      +     +F  ++D ++ +WN++I 
Sbjct: 134 KQIHGLVLKIGFGVD-----KFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLID 188

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS-VAIRNGFE 175
           GYA      LA+E++ +M     + D+ ++  L+  +SK   +         + IRN   
Sbjct: 189 GYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS 244

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
                 N++++ Y   G    A ++F+ M ER LV WNS+I G+  N +  +AL LF  M
Sbjct: 245 -----WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVM 299

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             E + P+  T++   SA + + +L  GR  H+Y+ K G   +  +   L++ YSKCG +
Sbjct: 300 LREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSV 359

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
            +A RVFR + K+    W++++VGL ++G  ++ LELF EM   G  P  +TF+GVL AC
Sbjct: 360 KSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNAC 419

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G  ++   YFK M  +YGI P IEH+GC++D+L RAG +++A + I+ M +  N VI
Sbjct: 420 SHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVI 479

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W +LL     HG+  + E A   L+ L P  +G YV+LSN+YA    W  V++VR  M K
Sbjct: 480 WTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKK 539

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + +KK PG S +E    + EF +GD+SHPQTEEI+  L E+ KKL + G++P T  V   
Sbjct: 540 KGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLC 599

Query: 536 IEEE-EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           +EE+ EKE  L  HSE++AIAF L+N   G+P+R++KNLR+C DCH   KL+S +Y+REI
Sbjct: 600 LEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREI 659

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD SRFHHFK G CSC+D+W
Sbjct: 660 IIRDGSRFHHFKSGSCSCKDFW 681



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 210/427 (49%), Gaps = 60/427 (14%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDP 106
           LQ C + + +  Q+HA SI+    LN+P +   L+  YA   ++  + YAH++F  +Q+P
Sbjct: 22  LQNCGTER-EANQLHALSIK-TASLNHPSVSSRLLALYADPRIN-NLQYAHSLFDWIQEP 78

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
            + +WN +I+ Y E+     A+ L+ K+ +    PD+ T P +LK  ++L  ++ G+Q H
Sbjct: 79  TLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIH 137

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
            + ++ GF    FV +SLV MY+  G ++   KVF+ M ++D+V+WNS+I+G+A  G+  
Sbjct: 138 GLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIE 197

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL +F EM     E D ++   L    ++ G L   R       ++ + ++V+  NA++
Sbjct: 198 LALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFD---RMPIRNSVSW-NAMI 249

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           + Y K G    A+ +F +M +R+ V+W++++ G   N    +AL+LF+ M      P   
Sbjct: 250 NGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYT 309

Query: 347 TFVGVLYAC-----------------------------------SHCGMVDEGFSYFKRM 371
           T +G + A                                    S CG V      F+ +
Sbjct: 310 TILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSI 369

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHGH 428
             +     K+ H+  ++  LG  GLV+Q  E    M    + P+A+ +  +L AC+   H
Sbjct: 370 PKK-----KLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACS---H 421

Query: 429 SAIAEIA 435
           +  AE A
Sbjct: 422 AGFAEDA 428


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 321/535 (60%), Gaps = 3/535 (0%)

Query: 85  AIVSLSFPMSYAHN---IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           A+V++       H+   ++  + D ++ +WN  + G  +       + ++  M   G  P
Sbjct: 455 ALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIP 514

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           + +T+  +L + S L DV  G Q H+  I+N  +   FV  +L+ MYA   +++DA   F
Sbjct: 515 NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAF 574

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
             +S RDL  W  +I  +A   +  +AL  FR+M  EGV+P+ +T+    S C+ L +L 
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G++ H+ V+K G   ++ V +AL+D Y+KCG +  A+ +F  + +R+ ++W+T++ G A
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            NG G +AL  F+ M   G  P  VTF G+L ACSH G+V+EG  +F  M  ++GI P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           +H  CMVD+LGR G   +  ++IQ M +  NA+IW T+LGA  +H +  + E A + L +
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           L+P+    Y+LLSN++A E RW +V+ VR  M  + VKK PG S VE   +V  F   D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           SHPQ +EIH  L E+ ++L    YVP+TE V  ++ E EK++ L +HSE++A+ F L++T
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +    +R+ KNLR+C DCH  +K IS + ++EIVVRD  RFHHFK+G CSC D+W
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 198/398 (49%), Gaps = 10/398 (2%)

Query: 47  TLLQVCASSKHKLKQ---VHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           T+L+ CA+SK+ LKQ   +H+  I+ G   N     G   +Y+   L+     A  +F  
Sbjct: 319 TVLKGCANSKN-LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID---AIGVFKT 374

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++ P+I  W+ +I    +      +++L+  M +    P+ +T   LL A +   +++ G
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +  H+   + GFE+ V V N+LV MY   G V D  K++E M +RDL++WN+ ++G    
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G  +  LT+F  M  EG  P+ YT +S+  +C+ L  +  GR+ H ++ K  L DN  V 
Sbjct: 495 GMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            AL+D Y+KC  +  A   F  +  R+  +W+ ++   A    G++AL  F++M+  G  
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P E T  G L  CS    + EG      M  + G +  +     +VD+  + G +++A E
Sbjct: 615 PNEFTLAGCLSGCSSLASL-EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA-E 672

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            +   L+  + + W T++     +G    A  A   +L
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMML 710



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 199/417 (47%), Gaps = 18/417 (4%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCI----TLLQVCASSKH--KLKQVHAFSIRH 69
           + + P R    +  T  ++ N +    +K +    ++L+ CAS +     K +H   ++ 
Sbjct: 82  VHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKD 141

Query: 70  GVPLNNPDLGKYL----IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPL 125
            +   NPD   ++    +YA    S   +YA  + + + D ++ +W  +I+G        
Sbjct: 142 VI---NPDSHLWVSLVNVYAKCRYS---AYARLVLAKMPDRDVVSWTALIQGLVAEGFAN 195

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
            ++ L+ +M   GI P+  T    LKA S    + +G+Q H+ A + G    +FV ++LV
Sbjct: 196 DSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALV 255

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
            +YA  G ++ A K+F  M E++ V WN ++NG+A  G     L LF  M    V+ + +
Sbjct: 256 DLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEF 315

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+ ++   CA    L  G+  H+ + K G   N  +   L+D YSKCG+ I A  VF+ +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           +K + V WS L+  L   G  +E+++LF  M +G  +P + T   +L A ++ G +  G 
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           S    +  +YG    +     +V +  + G V    +  ++M+   + + W   L  
Sbjct: 436 SIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMV-DRDLISWNAYLSG 490



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           KQ+HA + + G+ L   DL  ++  A+V L      +  A  +F  + + N  TWN ++ 
Sbjct: 233 KQMHAQAFKLGLLL---DL--FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GYA+  +    ++L+  M    +K +  T   +LK  +   +++ G+  HS+ I+ G+E 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+   LV MY+  G   DA  VF+ + + D+V W+++I      G+  E++ LF  M 
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
                P+ YT+ SL SA    G L  G+  H  VWK G   +V V+NAL+  Y K G + 
Sbjct: 408 LGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVH 467

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              +++  M  R+ +SW+  + GL   G     L +F  M   GF+P   TF+ +L +CS
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/521 (39%), Positives = 316/521 (60%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ + N MI G+  +     +V L+ ++  SG +  + T   L+   S 
Sbjct: 85  ARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSP 144

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                +    H   ++ G  S   V  +L  +Y     +  A ++F+  +E+ L +WN++
Sbjct: 145 FGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAM 204

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G   NG  + A++LF+ M    V P+  T+ S+ SACA++GAL+LG   H+ +     
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF 264

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV V+ AL+D Y+KCG I  A+ +F  M ++N V+W+ ++ G  ++G G+EAL+LF +
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  +TF+ VLYACSH G+V EG   F  M  ++G  P  EH+ CMVD+LGRAG
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAG 384

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +K+A E+I+ M + P   +W  LLGAC IH  + +A +A   L +L+P++ G YVL+SN
Sbjct: 385 QLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSN 444

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +Y+ E+++     VR+   K+R+ KTPG +L+E+G     F  GD+SHPQ++ I+A L +
Sbjct: 445 IYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDK 504

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T K+   G+   T  V  D+EEEEKE  +  HSEK+AIAF L++T PG  +R++KNLRV
Sbjct: 505 LTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRV 564

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K +SK+  R IVVRD +RFHHFKDG CSC DYW
Sbjct: 565 CLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 12/350 (3%)

Query: 114 MIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
           MI G+ +++    ++ ++  M + +G + D  T   +L A+++L ++++G Q   +AI+ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GF S V +   L+ +++  G V+ A  +F  + ++DL++ N++I+GF  NG+  +++ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           +E+ S G      T+V L    +  G   L    H +  K+G+  + +V+ AL   Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
             +I A+++F E  ++   SW+ ++ G   NG    A+ LF+ M+     P  VT   +L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 353 YACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            AC+  G +  G    S  K  + E  +         ++D+  + G +  A E     LM
Sbjct: 241 SACAQIGALSLGEWVHSLIKSNRFESNVYVSTA----LIDMYAKCGSITVARELFD--LM 294

Query: 410 P-PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           P  N V W  ++    +HGH   A      +L    K +G    LS LYA
Sbjct: 295 PEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTG-LTFLSVLYA 343



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 123/245 (50%), Gaps = 3/245 (1%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           +H F ++ G+ +++  +   L      L+  M +A  +F    +  + +WN MI G  ++
Sbjct: 154 IHGFCVKLGI-VSHSSVSTALTTVYCRLN-EMIFARQLFDESAEKTLASWNAMISGCTQN 211

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
                A+ L+  M  + + P+  T   +L A +++  + +GE  HS+   N FES V+V 
Sbjct: 212 GLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVS 271

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
            +L+ MYA  G +  A ++F+LM E++ V WN++I+G+  +G   EAL LF +M S  V+
Sbjct: 272 TALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVK 331

Query: 242 PDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           P G T +S+  AC+  G +  G    HT V   G          ++D   + G +  A  
Sbjct: 332 PTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALE 391

Query: 301 VFREM 305
             + M
Sbjct: 392 FIKAM 396


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 316/523 (60%), Gaps = 1/523 (0%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAI 153
           YA  IF  +   N  +W+ MI GY  S     A+EL+ +M +   + P   T   +L+A 
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           +KL D+  G + H   I+ G    + + N+L+ MYA  G + DA + F+ M+ +D V+++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFS 382

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++++G   NG    AL++FR M   G++PD  TM+ +  AC+ L AL  G  +H Y+   
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G + +  + NAL+D YSKCG I  A+ VF  M + + VSW+ +++G  ++G G EAL LF
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 502

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            ++   G  P ++TF+ +L +CSH G+V EG  +F  M  ++ I+P++EH  CMVD+LGR
Sbjct: 503 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 562

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AGL+ +A+ +I+NM   P+  IW  LL AC IH +  + E     +  L P+ +G++VLL
Sbjct: 563 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLL 622

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   RW +   +R T     +KK PG S +E+   V  F  GD+SH Q  +I+  L
Sbjct: 623 SNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKL 682

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+  ++K  GY      VF D+EEEEKE  L YHSEK+AIAF ++N   G P+ V KNL
Sbjct: 683 EELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNL 742

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH AIK ++ +  REI VRD +RFHHFK+G C+C D+W
Sbjct: 743 RVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 201/394 (51%), Gaps = 19/394 (4%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSH 102
           LL+ C  SK   + K++H   ++     N  +    +++ +  L    +    A  +F  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLK-----NTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + +P++  WN +IR YA +     A++LY  M   G++P+ +TYPF+LKA S L  +  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            + HS A   G ES VFV  +LV  YA  G + +A ++F  MS RD+VAWN++I G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G  ++A+ L  +M  EG+ P+  T+V +     E  AL  G+  H Y  +    + V V 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI-GGF 341
             LLD Y+KC  ++ A+++F  M  RN VSWS ++ G   +   KEALELF +M +    
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 342 VPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            P  VT   VL AC+    +  G     Y  ++    G +  I     ++ +  + G++ 
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL----GSVLDILLGNTLLSMYAKCGVID 364

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            A  +   M  P ++V +  ++  C  +G++A+A
Sbjct: 365 DAIRFFDEM-NPKDSVSFSAIVSGCVQNGNAAVA 397



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 112/209 (53%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           + Y  LL+A  +   +   ++ H   ++N   +   V + L  +Y +   V  A ++F+ 
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +    ++ WN +I  +A NG  + A+ L+  M   GV P+ YT   +  AC+ L A+  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H++    GL  +V V  AL+DFY+KCGI++ AQR+F  M  R+ V+W+ ++ G ++ 
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G   +A++L  +M+  G  P   T VGVL
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S+A  +F+ +   +I +WN MI GY      + A+ L+  +   G+KPD  T+  LL +
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 153 IS 154
            S
Sbjct: 524 CS 525


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 320/521 (61%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   ++ +W  +I GY++S     A+ L+ KM   G +P+  T   LLKA   
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q H+ +++ G++  V V +SL+ MYA + H+++A  +F  ++ +++V+WN++
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A  G+    + LF +M  +G EP  +T  S+F+ACA  G+L  G+  H +V K G 
Sbjct: 279 IAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG 338

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N L+D Y+K G I  A++VFR + K++ VSW++++ G A +G G EAL+LF++
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P E+TF+ VL ACSH G++DEG  YF+ MK ++ I  ++ H   +VDLLGRAG
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAG 457

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A ++I+ M + P A +W  LLG+C +H +  +   A   + +L+P  SG +VLLSN
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   R  +  +VR+ M +  VKK P  S VE+ N V  F   D SHP  EEI  M  +
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ K+K  GYVP T +V   + ++++E  L YHSEK+A+AF ++ T PG  +R+ KN+R+
Sbjct: 578 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 637

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K  S+V  REI+VRD +RFHHF  G CSCRDYW
Sbjct: 638 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 4/300 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           ++   ++P+   Y  +L   + L  ++ G   H+    + FE  + + N +++MYA  G 
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +++A  +F+ M  +D+V+W  +I+G++ +G+ +EAL LF +M   G +P+ +T+ SL  A
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
                +   GR+ H +  K G   NV+V ++LLD Y++   +  A+ +F  +  +N VSW
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + L+ G A  G G+  + LF +M   GF P   T+  V  AC+  G +++G  +      
Sbjct: 276 NALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG-KWVHAHVI 334

Query: 374 EYGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           + G  P I + G  ++D+  ++G +K A +  +  L+  + V W +++     HG  A A
Sbjct: 335 KSGGQP-IAYIGNTLIDMYAKSGSIKDAKKVFRR-LVKQDIVSWNSIISGYAQHGLGAEA 392



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 138/264 (52%), Gaps = 3/264 (1%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S H  +Q+HAFS+++G  +N   +G  L+      +  M  A  IF+ +   N+ +WN +
Sbjct: 221 SDHHGRQLHAFSLKYGYDMN-VHVGSSLLDMYARWAH-MREAKVIFNSLAAKNVVSWNAL 278

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I G+A        + L+ +M   G +P   TY  +  A +    +  G+  H+  I++G 
Sbjct: 279 IAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG 338

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           + + ++ N+L+ MYA  G +KDA KVF  + ++D+V+WNS+I+G+A +G   EAL LF +
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M    V+P+  T +S+ +AC+  G L  G+     + K  +   V  +  ++D   + G 
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 458

Query: 295 IIAAQRVFREMR-KRNAVSWSTLV 317
           +  A +   EM  K  A  W  L+
Sbjct: 459 LNEANKFIEEMPIKPTAAVWGALL 482


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/521 (39%), Positives = 323/521 (61%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +F  +Q+ +  +W  MI G+ ++     A++L+ +M +  ++ D +T+  +L A   
Sbjct: 227 SRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGG 286

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  ++ G+Q H+  IR  ++  +FV ++LV MY     +K A  VF  M+ +++V+W ++
Sbjct: 287 VMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAM 346

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+  NG   EA+ +F +M + G+EPD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 347 LVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 406

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  + R+F EM   + VSW+ LV G A  G   E L LF+ 
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFES 466

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   GF P +VTF+GVL ACS  G+V +G   F+ M  E+ I+P  +H+ CM+DL  RAG
Sbjct: 467 MLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAG 526

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A ++I  M   P+A+ W +LL +C  H +  I + A  +LL+LEP ++  Y+LLS+
Sbjct: 527 RLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSS 586

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA + +W  V  +R+ M  + ++K PG S ++  N+V  F   D+S+P +++I++ L +
Sbjct: 587 IYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEK 646

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGYVP   +V  D+++ EK   L++HSEK+AIAF L+   PG P+RVVKNLRV
Sbjct: 647 LNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRV 706

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  REI+VRD +RFH FKDG CSC D+W
Sbjct: 707 CGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 173/341 (50%), Gaps = 33/341 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLA 157
           +F  +   ++ +WN++I  YA     L +V+ Y+ M  +G    +      +L   SK  
Sbjct: 97  VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQG 156

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG------------------------- 192
            V +G Q H   ++ GF+S VFV + LV MY+  G                         
Sbjct: 157 CVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIA 216

Query: 193 ------HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
                  ++D+ ++F  M E+D ++W ++I GF  NG   EA+ LFREM  E +E D YT
Sbjct: 217 GLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYT 276

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+ +AC  + AL  G++ H Y+ +    DN+ V +AL+D Y KC  I +A+ VFR+M 
Sbjct: 277 FGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMN 336

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            +N VSW+ ++VG   NG+ +EA+++F +M+  G  P + T   V+ +C++   ++EG  
Sbjct: 337 CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ 396

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           +  R     G++  I     +V L G+ G ++ ++     M
Sbjct: 397 FHCRALVS-GLISFITVSNALVTLYGKCGSIEDSHRLFSEM 436



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 40/287 (13%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           ++  N+L+  Y+    + +  +VF  M  RD+V+WNS+I+ +A  G   +++  +  M  
Sbjct: 75  LYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 238 EG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            G    +   + ++    ++ G + LG + H +V K G    V V + L+D YSK G++ 
Sbjct: 135 NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194

Query: 297 AAQRVFREMRKRN-------------------------------AVSWSTLVVGLAVNGF 325
            A++ F EM ++N                               ++SW+ ++ G   NG 
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
            +EA++LF+EM +      + TF  VL AC     + EG    +Y  R   +  I     
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG-- 312

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               +VD+  +   +K A E +   +   N V W  +L     +G+S
Sbjct: 313 --SALVDMYCKCKSIKSA-ETVFRKMNCKNVVSWTAMLVGYGQNGYS 356


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/519 (39%), Positives = 318/519 (61%), Gaps = 1/519 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  I +W ++I  Y        A+ L+ +M   G++PD +T   ++ A + 
Sbjct: 350 ATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC 409

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            + +  G   HS  I+NG  S + V N+L++MYA  G V++A  VF  +  +D+V+WN++
Sbjct: 410 SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTM 469

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G++ N  PNEAL LF +M  +  +PD  TM  +  ACA L AL  GR  H ++ + G 
Sbjct: 470 IGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGY 528

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +++V  AL+D Y+KCG+++ AQ +F  + K++ +SW+ ++ G  ++GFG EA+  F E
Sbjct: 529 FSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNE 588

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M I G  P E +F  +L ACSH G+++EG+ +F  M++E G+ PK+EH+ C+VDLL R G
Sbjct: 589 MRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMG 648

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +AY++I++M + P+  IW  LL  C IH    +AE     + +LEP ++  YV+L+N
Sbjct: 649 NLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLAN 708

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA  ++W  V+++R+ M K   K+ PG S +E+G +   F  G+  HPQ ++I  +L++
Sbjct: 709 VYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSK 768

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T +++ E Y      V  + ++ EKE     HSEK A+AF ++N  PG  VRV KN RV
Sbjct: 769 LTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRV 828

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           C DCH   K +SK    EIV+RD +RFHHFKDG CSCRD
Sbjct: 829 CGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 223/425 (52%), Gaps = 20/425 (4%)

Query: 41  VVRKCITLLQV--CASSKHKLKQ---VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--- 92
           VV  C T   V  C ++  K+K+   VH + ++ G   N       ++ ++++  F    
Sbjct: 191 VVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA-----VVNSLIAAYFKFGG 245

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  AHN+F  + +P++ +WN+MI G   +      +E++ +M + G++ D  T   +L A
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + + ++ +G   H   ++  F   V   N+L+ MY+  G++  A +VF  M +  +V+W
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S+I  +   G  ++A+ LF EM S+GV PD YT+ S+  ACA   +L  GR  H+YV K
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+  N+ V NAL++ Y+KCG +  A+ VF ++  ++ VSW+T++ G + N    EALEL
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-MVDLL 391
           F +M+   F P ++T   VL AC+    +D+G      +    G    + H  C +VD+ 
Sbjct: 486 FLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHIL-RRGYFSDL-HVACALVDMY 542

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGD 449
            + GL+  A + + +M+   + + W  ++    +H  G+ AI+      +  +EP  S  
Sbjct: 543 AKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 601

Query: 450 YVLLS 454
             +L+
Sbjct: 602 SAILN 606



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 199/381 (52%), Gaps = 12/381 (3%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++LQ+CA  K     K+VH+  I +G+ ++   LG  L++  V+    +     IF  + 
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEA-LGAKLVFMYVNCG-DLVQGRKIFDKIM 156

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +  +F WN ++  YA+  N   +V L+ KM   G+  + +T+  +LK  + L  V+  ++
Sbjct: 157 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR 216

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   ++ GF S   V NSL+  Y  FG V+ A  +F+ +SE D+V+WNS+ING   NG 
Sbjct: 217 VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 276

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
               L +F +M   GVE D  T+VS+  ACA +G L+LGR  H +  K   S+ V  +N 
Sbjct: 277 SGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNT 336

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           LLD YSKCG +  A  VF +M     VSW++++      G   +A+ LF EM+  G  P 
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396

Query: 345 EVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
             T   +++AC+    +D+G    SY  +     G+   +     ++++  + G V++A 
Sbjct: 397 IYTVTSIVHACACSSSLDKGRDVHSYVIK----NGMGSNLPVTNALINMYAKCGSVEEA- 451

Query: 402 EYIQNMLMPPNAVIWRTLLGA 422
             + + +   + V W T++G 
Sbjct: 452 RLVFSKIPVKDIVSWNTMIGG 472



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 12/315 (3%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N  I  + E  +   A+EL +K      +   ++Y  +L+  ++   +  G++ HSV I 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTK--SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
           NG      +   LV MY   G +    K+F+ +    +  WN +++ +A  G   E+++L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F++M   GV  + YT   +    A LG +   +R H YV K+G   N  V N+L+  Y K
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            G + +A  +F E+ + + VSW++++ G  VNGF    LE+F +M I G      T V V
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMP----KIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           L AC++ G +  G     R    +G+      ++     ++D+  + G +  A E    M
Sbjct: 303 LVACANIGNLSLG-----RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357

Query: 408 LMPPNAVIWRTLLGA 422
                 V W +++ A
Sbjct: 358 -GDTTIVSWTSIIAA 371


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 316/537 (58%), Gaps = 31/537 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + ++ TW+ +I  + ++     A+  +  MH  G+  D       L A + 
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH---------------------- 193
           L  V MG+  HS++++ G ES + +QN+L++MY+  G                       
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 313

Query: 194 ---------VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                    V +A  +F+ M E+D+V+W+S+I+G+A N   +E L LF+EM   G +PD 
Sbjct: 314 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 373

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
            T+VS+ SACA L AL  G+  H Y+ + GL+ NV +   L+D Y KCG +  A  VF  
Sbjct: 374 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 433

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M ++   +W+ L++GLA+NG  + +L++F  M+     P E+TF+GVL AC H G+VDEG
Sbjct: 434 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 493

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             +F  M  ++ I P ++H+GCMVDLLGRAG +++A E +  M M P+   W  LLGAC 
Sbjct: 494 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK 553

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
            HG S +       L++L+P H G +VLLSN+YA + +W +V E+R  M K RV K PG 
Sbjct: 554 KHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 613

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S++E    + EF  GD++HP  + I  ML E+  KLKLEGY P    V  D++EEEKE  
Sbjct: 614 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKEST 673

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           L  HSEK+AIAF L+N +P TP+R++KNLR+C DCH A KLISK + R+IV   R +
Sbjct: 674 LFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFRGQ 730



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 74/384 (19%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D +++  NT+I  ++  +N   A  ++++  V     D+ ++  +L    ++ +V   + 
Sbjct: 110 DSDVYVRNTLINCFSVCSNMTDACRVFNESSV----LDSVSWNSILAGYIEIGNVEEAKH 165

Query: 165 T-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H +  R+     +   NS++ ++   G V +ACK+F+ M E+D+V W+++I  F  N 
Sbjct: 166 IYHQMPERS-----IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNE 220

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EA+  F  M   GV  D    VS  SACA L  + +G+  H+   K+G    +N+ N
Sbjct: 221 MYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQN 280

Query: 284 ALLDFYSKCGIIIAAQRVFRE-------------------------------MRKRNAVS 312
           AL+  YSKCG I+ A+++F E                               M +++ VS
Sbjct: 281 ALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVS 340

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFK 369
           WS+++ G A N    E L LF+EM++ GF P E T V V+ AC+    +++G    +Y K
Sbjct: 341 WSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIK 400

Query: 370 R--------------------------MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYE 402
           R                          ++  YG++ K I  +  ++  L   GLV+ + +
Sbjct: 401 RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLD 460

Query: 403 YIQNML---MPPNAVIWRTLLGAC 423
              NM    + PN + +  +LGAC
Sbjct: 461 MFSNMKKCHVTPNEITFMGVLGAC 484



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 134/280 (47%), Gaps = 42/280 (15%)

Query: 88  SLSFP---MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
           S  FP   + Y   IF+ +++ N F WN MIR Y ++ +P  A  LY  M  + +  D +
Sbjct: 20  STHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNY 79

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYP L++A S        +Q H+  ++ GF+S V+V+N+L++ ++   ++ DAC+VF   
Sbjct: 80  TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 139

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           S  D V+WNS++ G+   G   EA  ++ +M    +     +M+ LF           G 
Sbjct: 140 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN-SMIVLF-----------GM 187

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           R                           G+++ A ++F EM +++ V+WS L+     N 
Sbjct: 188 R---------------------------GLVVEACKLFDEMLEKDMVTWSALIACFQQNE 220

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
             +EA+  F  M   G +  EV  V  L AC++  +V+ G
Sbjct: 221 MYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 312/546 (57%), Gaps = 40/546 (7%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           +PL +      +I A+  +   M  A  +FS + + N  +W+ M+ GY    +   AVE 
Sbjct: 130 MPLKDVASWNTMISALAQVGL-MGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC 188

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +                                  ++  +R+     V    +++  Y  
Sbjct: 189 F----------------------------------YAAPMRS-----VITWTAMITGYMK 209

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           FG V+ A ++F+ MS R LV WN++I G+  NG+  + L LFR M   GV+P+  ++ S+
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV 269

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
              C+ L AL LG++ H  V K  LS +     +L+  YSKCG +  A  +F ++ +++ 
Sbjct: 270 LLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDV 329

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           V W+ ++ G A +G GK+AL LF EM+  G  P  +TFV VL AC+H G+VD G  YF  
Sbjct: 330 VCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNT 389

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M+ ++GI  K EH+ CMVDLLGRAG + +A + I++M   P+  I+ TLLGAC IH +  
Sbjct: 390 MRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLN 449

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           +AE A   LL+L+P  +  YV L+N+YA + RW +V  +RR+M    V K PG+S +E+ 
Sbjct: 450 LAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEIN 509

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
           + V  F   DR HP+   IH  L ++ KK+KL GYVP  E V  D+ EE KE  L +HSE
Sbjct: 510 SVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSE 569

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L+    G P+RV KNLRVC DCH A K IS +  REI+VRD +RFHHFKDG C
Sbjct: 570 KLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFC 629

Query: 611 SCRDYW 616
           SCRDYW
Sbjct: 630 SCRDYW 635



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 118/306 (38%), Gaps = 59/306 (19%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN-GKPNEALTLFREMA 236
           V   N L+  Y   G +  A +VFE M  +  V WNS++  FA   G    A  LF ++ 
Sbjct: 41  VIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIP 100

Query: 237 SE----------------GVE-----------PDGYTMVSLFSACAELGALALGRRAHTY 269
                             GV             D  +  ++ SA A++G +   RR  + 
Sbjct: 101 QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSA 160

Query: 270 V-------WKVGLSDNVNVNN--------------------ALLDFYSKCGIIIAAQRVF 302
           +       W   +S  V   +                    A++  Y K G +  A+R+F
Sbjct: 161 MPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLF 220

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
           +EM  R  V+W+ ++ G   NG  ++ L LF+ M   G  P  ++   VL  CS+   + 
Sbjct: 221 QEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQ 280

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE-YIQNMLMPPNAVIWRTLLG 421
            G     ++  +  +         +V +  + G +K A+E +IQ  +   + V W  ++ 
Sbjct: 281 LG-KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQ--IPRKDVVCWNAMIS 337

Query: 422 ACTIHG 427
               HG
Sbjct: 338 GYAQHG 343



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           +TSV+  C  L     S+    KQVH    +   PL++       + ++ S    +  A 
Sbjct: 266 LTSVLLGCSNL-----SALQLGKQVHQLVCK--CPLSSDTTAGTSLVSMYSKCGDLKDAW 318

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F  +   ++  WN MI GYA+      A+ L+ +M   G+KPD  T+  +L A +   
Sbjct: 319 ELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAG 378

Query: 158 DVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
            V +G Q  +   R+ G E+       +V +    G + +A  + + M
Sbjct: 379 LVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN-GFGKEALELFK 334
           ++NV  +N L+  Y +CG I +A RVF +M+ ++ V+W++++   A   G  + A +LF+
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 335 EMEIGGFVPGEVTFVGVLYAC--SHCGMVD-EGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           ++      P  V++  ++ AC   H G+ D  GF     +KD       +  +  M+  L
Sbjct: 98  KIP----QPNTVSY-NIMLACHWHHLGVHDARGFFDSMPLKD-------VASWNTMISAL 145

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            + GL+ +A      M    N V W  ++  
Sbjct: 146 AQVGLMGEARRLFSAM-PEKNCVSWSAMVSG 175


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/427 (48%), Positives = 279/427 (65%), Gaps = 1/427 (0%)

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           FG   DA  +F  M  RD+V+WNS++  +A  GKPNEAL LF +M + GV+P   T+VSL
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SACA LGAL  G   HTY+    +  N  V  AL+D Y+KCG I  A +VF  M  ++ 
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           ++W+T++ G+A++G  KEA  LFKEM+  G  P ++TFV +L ACSH GMVDEG      
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M   YGI PK+EH+GC++DLL RAGL+++A E I  M M PN      LLG C IHG+  
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 400

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           + E+    L+ L+P HSG Y+LLSN+YA  ++W + ++VR  M    + K PG S++EL 
Sbjct: 401 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 460

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHS 549
             V  F  GD SHP++ +I+  L EI  +LK   G+   T +V  D+EEE+KE AL  HS
Sbjct: 461 GMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHS 520

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+AIA+ L++      +R+VKNLRVC DCH   KLISKVY REI+VRDR+RFHHF+DG 
Sbjct: 521 EKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGE 580

Query: 610 CSCRDYW 616
           CSC D+W
Sbjct: 581 CSCLDFW 587



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 2/231 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +FS +   ++ +WN+M+  YA+   P  A+ L+ +M   G+KP   T   LL A + 
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G   H+    N  E    V  +LV MYA  G +  A +VF  M  +D++AWN++
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 286

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVWKVG 274
           I G A +G   EA  LF+EM   GVEP+  T V++ SAC+  G +  G++         G
Sbjct: 287 IAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYG 346

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           +   V     ++D  ++ G++  A  +   M  + N  +   L+ G  ++G
Sbjct: 347 IEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHG 397



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 20  PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLG 79
           P    +L+    A    P  + V   ++LL  CA      K +H  +    +  N  ++ 
Sbjct: 195 PNEALALFDQMRAVGVKPTEATV---VSLLSACAHLGALDKGLHLHTY---INDNRIEVN 248

Query: 80  KYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136
             +  A+V +      +S A  +F+ ++  ++  WNT+I G A   +   A  L+ +M  
Sbjct: 249 SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKE 308

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQ-THSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
           +G++P+  T+  +L A S    V  G++    ++   G E  V     ++ + A  G ++
Sbjct: 309 AGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLE 368

Query: 196 DACKVFELMS-ERDLVAWNSVINGFASNG 223
           +A ++   M  E +  A  +++ G   +G
Sbjct: 369 EAMELIGTMPMEPNPCALGALLGGCRIHG 397


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 314/523 (60%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   ++  W+ M+  YA + +P  A+ L+ +M + G+ P+  T    L A + 
Sbjct: 115 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 174

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D+R G   H      G +S V V  +LV++Y   G ++ A + F  + E+++VAW+++
Sbjct: 175 LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAI 234

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH--TYVWKV 273
              +A N +  +A+ +   M  EG+ P+  T VS+  ACA + AL  GRR H  T V   
Sbjct: 235 SAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGG 294

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           GL  +V V  AL++ YSKCG +  A  +F ++   + V W++L+   A +G  ++ALELF
Sbjct: 295 GLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELF 354

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           + M + G  P  +TF  VL+ACSH GM+D+G  +F     ++GI P+ EHFGCMVDLLGR
Sbjct: 355 ERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGR 414

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG +  + + + +M   P+ V W   LGAC  + +   A  A   L QL+P+    YVLL
Sbjct: 415 AGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLL 474

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW +V  +R+ M      K  G S +E+ +RV EF  GD  HP+  EIHA L
Sbjct: 475 SNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAEL 534

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             +TK +K  GYVP TE V  D+++E KE  + YHSEK+A+AF L+ T  G+P+RVVKNL
Sbjct: 535 QRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNL 594

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH A K ISK+ +REIVVRD +RFH F++G CSC DYW
Sbjct: 595 RVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 169/351 (48%), Gaps = 10/351 (2%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   +I +WN +I  Y  + +       +  M + GI P        L A +   ++
Sbjct: 18  FDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREI 77

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +G       +  G E    VQ +LV MY   GH  DA  VF  MS RD+VAW++++  +
Sbjct: 78  TIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAY 137

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A NG P EAL LFR+M  +GV P+  T+VS   ACA LG L  G   H  V   G+   V
Sbjct: 138 ARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGV 197

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  AL++ Y KCG I AA   F ++ ++N V+WS +    A N   ++A+ +   M++ 
Sbjct: 198 VVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLE 257

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAG--- 395
           G VP   TFV VL AC+    + +G    +R +    G+   +     +V++  + G   
Sbjct: 258 GLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLA 317

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEP 444
           L    ++ I ++    + V+W +L+     HG +  A+    R  L  L+P
Sbjct: 318 LAGDMFDKIAHL----DLVLWNSLIATNAQHGQTEKALELFERMRLEGLQP 364



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 4/240 (1%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           ++  Y+  G++    K F+ M   D+V+WN++I  +  N   +     FR M  +G+ P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINP- 59

Query: 244 GYTMVSLF-SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           G   +S+F SAC +   + +GR     +   G+ +   V  AL+  Y K G    A  VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
             M  R+ V+WS +V   A NG  +EAL LF++M++ G  P +VT V  L AC+  G + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            G    +R++ + GI   +     +V+L G+ G ++ A E     ++  N V W  +  A
Sbjct: 180 SGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAVEAF-GQIVEKNVVAWSAISAA 237


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/513 (41%), Positives = 315/513 (61%), Gaps = 1/513 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ TW  +I G++++  P  A+ L+ +M   G +P+  T   LLKA   
Sbjct: 142 ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGS 201

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G Q H+  ++ G++S V+V ++LV MYA  GH+  A   F+ M  +  V+WN++
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G A  G+   AL L  +M  +  +P  +T  S+ SACA +GAL  G+  H ++ K GL
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGL 321

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N LLD Y+K G I  A+RVF  + K + VSW+T++ G A +G GKE L+ F++
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P E++F+ VL ACSH G++DEG  YF+ MK +Y + P + H+   VDLLGR G
Sbjct: 382 MLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVG 440

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A  +I+ M + P A +W  LLGAC +H +  +   A     +L+P  SG  +LLSN
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSN 500

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +V +VR+ M +  VKK P  S VE+ N V  F   D +HP+ +EI     E
Sbjct: 501 IYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEE 560

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ K+K  GYVP T +V   ++++E+E+ L YHSEK+A+AF L+NT  G+P+R+ KN+RV
Sbjct: 561 ISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRV 620

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           C DCH AIK +SKV  REI+VRD +RFH F+DG
Sbjct: 621 CGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF- 174
           +  ++    L A++L  +     + PD + Y  LLK  ++L  V  G   H+  + + F 
Sbjct: 63  KSQSDGGTGLYALDLIQR---GSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFL 119

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           ++ + +QN +V+MYA  G + DA ++F+ M  +D+V W ++I GF+ N +P +AL LF +
Sbjct: 120 DNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQ 179

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M   G +P+ +T+ SL  A      L  G + H +  K G   +V V +AL+D Y++CG 
Sbjct: 180 MLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGH 239

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + AAQ  F  M  ++ VSW+ L+ G A  G G+ AL L  +M+   F P   T+  VL A
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSA 299

Query: 355 CSHCGMVDEG-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           C+  G +++G + +   +K    ++  I +   ++D+  +AG +  A + + + L+ P+ 
Sbjct: 300 CASIGALEQGKWVHAHMIKSGLKLIAFIGN--TLLDMYAKAGSIDDA-KRVFDRLVKPDV 356

Query: 414 VIWRTLLGACTIHG 427
           V W T+L  C  HG
Sbjct: 357 VSWNTMLTGCAQHG 370



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 22/301 (7%)

Query: 46  ITLLQVCASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNI 99
           ++ L   + S+H L    Q+HAF +++G          Y+  A+V +      M  A   
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGY-----QSSVYVGSALVDMYARCGHMDAAQLA 246

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   +  +WN +I G+A       A+ L  KM     +P   TY  +L A + +  +
Sbjct: 247 FDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGAL 306

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H+  I++G + + F+ N+L+ MYA  G + DA +VF+ + + D+V+WN+++ G 
Sbjct: 307 EQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGC 366

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A +G   E L  F +M   G+EP+  + + + +AC+  G L  G      + K  +  +V
Sbjct: 367 AQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDV 426

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
                 +D   + G++  A+R  REM  +  A  W  L+           A  + K ME+
Sbjct: 427 PHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL----------GACRMHKNMEL 476

Query: 339 G 339
           G
Sbjct: 477 G 477


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 318/555 (57%), Gaps = 31/555 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M     IF    D N+  +NT++  Y +       + +  +M   G +PD  T    + A
Sbjct: 274 MYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAA 333

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L D+ +G+ +H+   RNG E L  + N+++ MY   G  + ACKVF+ MS + +V W
Sbjct: 334 CAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTW 393

Query: 213 NSVINGFASNGKPN-------------------------------EALTLFREMASEGVE 241
           NS+I G   +G+                                 EA+ L REM ++G++
Sbjct: 394 NSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            D  TMV + SAC  LGAL L +  +TY+ K  +  ++ +  AL+D +S+CG  + A RV
Sbjct: 454 GDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRV 513

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  M KR+  +W+  +   AV G  K A+ELF EM        +  FV +L A SH G V
Sbjct: 514 FENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYV 573

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           D+G   F  M+  +G+ P+I H+GCMVDLLGRAGL+++A++ +++M + PN VIW + L 
Sbjct: 574 DQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLA 633

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC  H +   A  A   + QL P+  G +VLLSN+YA   +W +V  VR  M ++  +K 
Sbjct: 634 ACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKV 693

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
            G S +E+   + EF  GD SH +  +I  ML EI  ++   GYVP T NV  D++E+EK
Sbjct: 694 AGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEK 753

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           E  LS HSEK+A+A+ L+NT  G P+RVVKNLR+C+DCH   KL+SK+Y REI VRD +R
Sbjct: 754 EHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNR 813

Query: 602 FHHFKDGHCSCRDYW 616
           +H FK+G CSCRD+W
Sbjct: 814 YHFFKEGFCSCRDFW 828



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 183/341 (53%), Gaps = 18/341 (5%)

Query: 31  PASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLS 90
           P + + P  S ++ C TL++        LKQ+H   ++ GV   N      LI A V + 
Sbjct: 18  PTTTQKPKNSSLQTCKTLIE--------LKQLHCNMLKKGVFNINK-----LIAACVQMG 64

Query: 91  F--PMSYAHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMH-VSGIKPDTHT 145
               ++YA N F   +    +++T NT+IRGYA S     A+ +Y  M  V GI PD  T
Sbjct: 65  THESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFT 124

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +PFLL A SK+     G Q H V ++ G    +FV NSL+H YAA G V    KVF+ M 
Sbjct: 125 FPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEML 184

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           ER++V+W S+ING++      EA+ LF EM   GVEP+  TMV   SACA+L  L LG++
Sbjct: 185 ERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKK 244

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
               + ++G+  N  V NALLD Y KCG + A + +F E   +N V ++T++     +G 
Sbjct: 245 VCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGL 304

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
             E L +  EM   G  P +VT +  + AC+  G +  G S
Sbjct: 305 AGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKS 345



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 212/433 (48%), Gaps = 42/433 (9%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           QVH   ++ G+ + +  +   LI+   +    +     +F  + + N+ +W ++I GY+ 
Sbjct: 143 QVHGVVVKMGL-VKDLFVANSLIHFYAACG-KVDLGRKVFDEMLERNVVSWTSLINGYSV 200

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
                 AV L+ +M   G++P+  T    + A +KL D+ +G++  ++    G +S   V
Sbjct: 201 VNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLV 260

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            N+L+ MY   G +    ++F+  S+++LV +N++++ +  +G   E L +  EM  +G 
Sbjct: 261 VNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ 320

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            PD  TM+S  +ACA+LG L++G+ +H YV++ GL    N++NA++D Y KCG   AA +
Sbjct: 321 RPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACK 380

Query: 301 VFREMRKRNAVSWSTLVVGLAVNG--------FG-----------------------KEA 329
           VF  M  +  V+W++L+ GL  +G        FG                       +EA
Sbjct: 381 VFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEA 440

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGC 386
           ++L +EM+  G     VT VG+  AC + G +D     ++Y ++      I   ++    
Sbjct: 441 IDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEK----NDIHIDMQLGTA 496

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           +VD+  R G    A    +NM    +   W   +    + G++  A      +L+ + K 
Sbjct: 497 LVDMFSRCGDPLNAMRVFENM-EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVK- 554

Query: 447 SGDYVLLSNLYAY 459
           + D+V ++ L A+
Sbjct: 555 ADDFVFVALLTAF 567


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 360/624 (57%), Gaps = 24/624 (3%)

Query: 1   MTSW--LMHSKQPSYEEISDLPCRVKSLYHSTPASQ----ENPITSVVRKCITLLQVCAS 54
           M SW  LM   Q +  E+  L      L+H + A+     ++   +V++ C  L Q+  +
Sbjct: 267 MVSWNTLMAGLQLNECELEAL-----QLFHESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNT 113
                +Q+H+  ++HG  L    +    +    S    ++ A NIFS      N+ +W  
Sbjct: 322 -----RQLHSCVLKHGFHLTGNVMTA--LADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +I G  ++ +  LAV L+S+M    + P+  TY  +LKA   +    +  Q H+  I+  
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTN 430

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           ++ +  V  +L+  Y+ FG  +DA  +F+++ ++D+VAW+++++  A  G    A  LF 
Sbjct: 431 YQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFN 490

Query: 234 EMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           +MA +G++P+ +T+ S+  ACA   A +  GR+ H    K    D + V++AL+  YS+ 
Sbjct: 491 KMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I +AQ VF     R+ VSW++++ G A +G+  +A+E F++ME  G     VTF+ V+
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
             C+H G+V EG  YF  M  ++ I P +EH+ CMVDL  RAG + +    I++M  P  
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAG 670

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
           A++WRTLLGAC +H +  + + +   LL LEP  S  YVLLSN+YA   +W    EVR+ 
Sbjct: 671 AMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKL 730

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M   +VKK  G S +++ N+V  F   D+SHP +++I+  L  I  +LK +GY P T  V
Sbjct: 731 MDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFV 790

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             DI E++KE  L  HSE++A+AF L+ T PGTP+++VKNLRVC DCH+ +K++S +  R
Sbjct: 791 LHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDR 850

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EI++RD SRFHHF  G CSC D+W
Sbjct: 851 EIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 156/320 (48%), Gaps = 6/320 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           + S    C+  L+ C S   ++  +Q+H   ++ G        G  L+   +     +  
Sbjct: 97  VDSATLSCV--LKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG-SVCE 153

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
              +F  +   N+ TW +++ G A +      + L+ +M   GI P+  T+  +L A++ 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G++ H+ +++ G  S VFV NSL++MYA  G V+DA  VF  M  RD+V+WN++
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTL 273

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G   N    EAL LF E  +   +    T  ++   CA L  LAL R+ H+ V K G 
Sbjct: 274 MAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF 333

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
               NV  AL D YSKCG +  A  +F      RN VSW+ ++ G   NG    A+ LF 
Sbjct: 334 HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFS 393

Query: 335 EMEIGGFVPGEVTFVGVLYA 354
            M     +P E T+  +L A
Sbjct: 394 RMREDRVMPNEFTYSAMLKA 413



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 157/327 (48%), Gaps = 8/327 (2%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N ++  YA        ++ +S     G+  D+ T   +LKA   + D  +GEQ H + ++
Sbjct: 68  NRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127

Query: 172 NGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
            G +   V    SLV MY   G V +  +VFE M ++++V W S++ G A     +E + 
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LF  M +EG+ P+ +T  S+ SA A  GAL LG+R H    K G   +V V N+L++ Y+
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA 247

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           KCG++  A+ VF  M  R+ VSW+TL+ GL +N    EAL+LF E         + T+  
Sbjct: 248 KCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYAT 307

Query: 351 VLYACSHCGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           V+  C++     +  +  +++     ++G          + D   + G +  A       
Sbjct: 308 VIKLCANL----KQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT 363

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEI 434
               N V W  ++  C  +G   +A +
Sbjct: 364 TGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 3/214 (1%)

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V  N V+  +A  G   E L  F      GV  D  T+  +  AC  +    LG + H  
Sbjct: 65  VGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCL 124

Query: 270 VWKVGLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
             K G     V+   +L+D Y KCG +     VF  M K+N V+W++L+ G A      E
Sbjct: 125 CVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSE 184

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
            + LF  M   G  P   TF  VL A +  G +D G         ++G    +     ++
Sbjct: 185 VMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCRSSVFVCNSLM 243

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           ++  + GLV+ A + + N +   + V W TL+  
Sbjct: 244 NMYAKCGLVEDA-KSVFNWMETRDMVSWNTLMAG 276


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 326/521 (62%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+   + + ++ +W TMI GY+++   + A++L+ KM  +G  P+ +T   +L + S 
Sbjct: 96  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 155

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G+Q HS+ ++  FES +FV +SL+ MYA   ++++A +VF+ + ERD+V+  ++
Sbjct: 156 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 215

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR++ SEG++ +  T  +L +A + L +L  G++ H  + +  L
Sbjct: 216 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 275

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG ++ ++RVF  M +R+ VSW+ +++G   +G G E + LFK+
Sbjct: 276 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD 335

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           +      P  VT + VL  CSH G+VDEG   F  +  E   +    H+GC++DLLGR+G
Sbjct: 336 LH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 394

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A   I+NM       IW +LLGAC +H +  + E+    LL++EP+++G+YV+LSN
Sbjct: 395 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSN 454

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W +V +VR+ M+++ V K PG S + L   +  F   +R HP  ++I+A + E
Sbjct: 455 IYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKE 514

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I   +K  G+VP    V  D+++E+KE  L  HSEK+AI F L+NT PG  +RV+KNLR+
Sbjct: 515 IFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRI 574

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K +SKVY REI +RD++RFH    G+C+C DYW
Sbjct: 575 CVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 4/313 (1%)

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           RG A     +  +   S M + G     H Y   + A  +   +  G Q H+  I   + 
Sbjct: 15  RGLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYR 74

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             VF+   LV MY   G + DA  V + M ER +V+W ++I+G++   +  EAL LF +M
Sbjct: 75  PAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKM 134

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
              G  P+ YT+ ++ ++C+   ++  G++ H+ + K     ++ V ++LLD Y+K   I
Sbjct: 135 LRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENI 194

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+RVF  + +R+ VS + ++ G A  G  +EAL+LF+++   G     VTF  ++ A 
Sbjct: 195 QEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 254

Query: 356 SHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           S    +D G       ++ E      +++   ++D+  + G +  +     NML   + V
Sbjct: 255 SGLASLDYGKQVHALILRKELPFFVALQN--SLIDMYSKCGKLLYSRRVFDNML-ERSVV 311

Query: 415 IWRTLLGACTIHG 427
            W  +L     HG
Sbjct: 312 SWNAMLMGYGRHG 324



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 44/199 (22%)

Query: 60  KQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           KQVHA  +R  +P    L N  +  Y      S    + Y+  +F ++ + ++ +WN M+
Sbjct: 264 KQVHALILRKELPFFVALQNSLIDMY------SKCGKLLYSRRVFDNMLERSVVSWNAML 317

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GY         + L+  +H   +KPD+ T   +L   S    V  G           F+
Sbjct: 318 MGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDI--------FD 368

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           ++V  Q++L+H     GH                  +  +I+    +G+  +AL L   M
Sbjct: 369 TVVKEQSALLHT----GH------------------YGCIIDLLGRSGRLEKALNLIENM 406

Query: 236 ASEGVEPDGYTMVSLFSAC 254
             E   P  +   SL  AC
Sbjct: 407 PFEST-PSIWG--SLLGAC 422


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 326/521 (62%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+   + + ++ +W TMI GY+++   + A++L+ KM  +G  P+ +T   +L + S 
Sbjct: 64  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 123

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G+Q HS+ ++  FES +FV +SL+ MYA   ++++A +VF+ + ERD+V+  ++
Sbjct: 124 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 183

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR++ SEG++ +  T  +L +A + L +L  G++ H  + +  L
Sbjct: 184 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG ++ ++RVF  M +R+ VSW+ +++G   +G G E + LFK+
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD 303

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           +      P  VT + VL  CSH G+VDEG   F  +  E   +    H+GC++DLLGR+G
Sbjct: 304 LH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 362

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++A   I+NM       IW +LLGAC +H +  + E+    LL++EP+++G+YV+LSN
Sbjct: 363 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSN 422

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W +V +VR+ M+++ V K PG S + L   +  F   +R HP  ++I+A + E
Sbjct: 423 IYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKE 482

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I   +K  G+VP    V  D+++E+KE  L  HSEK+AI F L+NT PG  +RV+KNLR+
Sbjct: 483 IFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRI 542

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH   K +SKVY REI +RD++RFH    G+C+C DYW
Sbjct: 543 CVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 145/295 (49%), Gaps = 4/295 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G     H Y   + A  +   +  G Q H+  I   +   VF+   LV MY   G 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           + DA  V + M ER +V+W ++I+G++   +  EAL LF +M   G  P+ YT+ ++ ++
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C+   ++  G++ H+ + K     ++ V ++LLD Y+K   I  A+RVF  + +R+ VS 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MK 372
           + ++ G A  G  +EAL+LF+++   G     VTF  ++ A S    +D G       ++
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            E      +++   ++D+  + G +  +     NML   + V W  +L     HG
Sbjct: 241 KELPFFVALQN--SLIDMYSKCGKLLYSRRVFDNML-ERSVVSWNAMLMGYGRHG 292



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 44/199 (22%)

Query: 60  KQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           KQVHA  +R  +P    L N  +  Y      S    + Y+  +F ++ + ++ +WN M+
Sbjct: 232 KQVHALILRKELPFFVALQNSLIDMY------SKCGKLLYSRRVFDNMLERSVVSWNAML 285

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GY         + L+  +H   +KPD+ T   +L   S    V  G           F+
Sbjct: 286 MGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDI--------FD 336

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           ++V  Q++L+H     GH                  +  +I+    +G+  +AL L   M
Sbjct: 337 TVVKEQSALLHT----GH------------------YGCIIDLLGRSGRLEKALNLIENM 374

Query: 236 ASEGVEPDGYTMVSLFSAC 254
             E   P  +   SL  AC
Sbjct: 375 PFEST-PSIWG--SLLGAC 390


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/524 (41%), Positives = 308/524 (58%), Gaps = 35/524 (6%)

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           +E Y++MH  G+  D  T PF+LK+ + L+ V MG   H   +R G E   +V  SL+ M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSV-------------------------------I 216
           Y   G + DA K+F+ M  RD+ +WN++                               I
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 217 NGFASNGKPNEALTLFREMASEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +G+  NG   +AL LF EM  +G E  P+  T+VS+  ACA+  AL  GRR H +   +G
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALEL 332
           L  N +V  AL   Y+KC  ++ A+  F  + +  +N ++W+T++   A +G G EA+ +
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+ M   G  P  VTF+G+L  CSH G++D G ++F  M   + + P++EH+ C+VDLLG
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLG 391

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A E I  M M     +W  LL AC  H +  IAE+A   L  LEP +SG+YVL
Sbjct: 392 RAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVL 451

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSNLYA    W  V+++R  +  + +KK+PG S +E+  +   F   D+SHPQ +EI+  
Sbjct: 452 LSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKF 511

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L  + +K+K+ GY+P T  V  DI EEEKE  L+ HSEK+AIAF L+NT PG  +RV KN
Sbjct: 512 LEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKN 571

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH A K ISK+Y REI+VRD +RFH FKDG CSC DYW
Sbjct: 572 LRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLL 150
           +  A ++F  ++  NI +W  MI GY ++     A+ L+ +M   G  +KP+  T   +L
Sbjct: 189 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 248

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RD 208
            A ++ A +  G + H  A   G      VQ +L  MYA    + +A   F+++++  ++
Sbjct: 249 PACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKN 308

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           L+AWN++I  +AS+G   EA+++F  M   GV+PD  T + L S C+  G +  G     
Sbjct: 309 LIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFN 368

Query: 269 YVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLV 317
            +  +  +   V     ++D   + G ++ A+ +  +M  +   S W  L+
Sbjct: 369 DMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALL 419



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++L  CA S    + +++H F+   G+ LN+    +  +  + +  + +  A   F  +
Sbjct: 245 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSV--QTALAGMYAKCYSLVEARCCFDMI 302

Query: 104 --QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
                N+  WNTMI  YA     + AV ++  M  +G++PD  T+  LL   S
Sbjct: 303 AQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCS 355


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 319/557 (57%), Gaps = 36/557 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESA----NPLLAV-ELYSKMHVSGIKPDTHTYPFLL 150
           A   F  +   ++ +W+ MI GYA+S       L  V +L  +M   G+ P+  T+  +L
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA------------- 197
           KA S    +  G Q H+   + GFES   +Q ++ +MYA  G + +A             
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453

Query: 198 -----------C-------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
                      C       KVF  MS R++V+WN +I G+A +G   +   L   M  EG
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG 513

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            +PD  T++S+  AC  L AL  G+  H    K+GL  +  V  +L+  YSKCG +  A+
Sbjct: 514 FQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEAR 573

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF ++  R+ V+W+ ++ G   +G G EA++LFK M      P E+TF  V+ AC   G
Sbjct: 574 TVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAG 633

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG   F+ M++++ + P  +H+GCMVDLLGRAG +++A E+IQ M   P+  +W  L
Sbjct: 634 LVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHAL 693

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE A   +L+LEP ++  YV LSN+YA   RW +  +VR+ M  + +K
Sbjct: 694 LGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLK 753

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K  G S +E+  R+  F   D +HP+ + IHA L  +TK++K  GY P    V  D++E 
Sbjct: 754 KDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEV 813

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           +KE AL +HSEK+AIA+ L+ T PGTP+R++KNLRVC DCH A K ISK+  REIV RD 
Sbjct: 814 QKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDA 873

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFH+FK+G CSC D+W
Sbjct: 874 NRFHYFKNGTCSCGDFW 890



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 178/329 (54%), Gaps = 7/329 (2%)

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  +   ++ TW++MI  YA + +P  A + + +M  + I+P+  T+  +LKA +  
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNY 192

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + +    + H+V   +G E+ V V  +L+ MY+  G +  AC++F+ M ER++V+W ++I
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAII 252

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
              A + K NEA  L+ +M   G+ P+  T VSL ++C    AL  GRR H+++ + GL 
Sbjct: 253 QANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 312

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF-GKEAL----E 331
            +V V NAL+  Y KC  I  A+  F  M KR+ +SWS ++ G A +G+  KE+L    +
Sbjct: 313 TDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQ 372

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           L + M   G  P +VTF+ +L ACS  G +++G      +  + G          + ++ 
Sbjct: 373 LLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI-SKVGFESDRSLQTAIFNMY 431

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            + G + +A E + + +   N V W +LL
Sbjct: 432 AKCGSIYEA-EQVFSKMENKNVVAWASLL 459



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 171/386 (44%), Gaps = 56/386 (14%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A++L   +   G+  +++TY  +++  +KL     G+  H      G    +++ NSL++
Sbjct: 62  AIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLIN 121

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
            Y+ FG V    +VF  M+ RD+V W+S+I  +A N  P +A   F  M    +EP+  T
Sbjct: 122 FYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRIT 181

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            +S+  AC     L   R  HT V   G+  +V V  AL+  YSKCG I  A  +F++M+
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK 241

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC----------- 355
           +RN VSW+ ++   A +    EA EL+++M   G  P  VTFV +L +C           
Sbjct: 242 ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 301

Query: 356 --SH----------------------CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
             SH                      C  + +    F RM         +  +  M+   
Sbjct: 302 IHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKR-----DVISWSAMIAGY 356

Query: 392 GRAGL--------VKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--------HSAIAEIA 435
            ++G         V Q  E ++   + PN V + ++L AC++HG        H+ I+++ 
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQ 461
             +   L+      Y    ++Y  EQ
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQ 442



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 97/172 (56%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +FS +   N+ +WN MI GYA+S +     EL S M V G +PD  T   +L+A
Sbjct: 468 LTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEA 527

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              L+ +  G+  H+ A++ G ES   V  SL+ MY+  G V +A  VF+ +S RD VAW
Sbjct: 528 CGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAW 587

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           N+++ G+  +G   EA+ LF+ M  E V P+  T  ++ SAC   G +  GR
Sbjct: 588 NAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGR 639



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+  EA+ L   +   G+  +  T   +   CA+L     G+  H  + ++GL+ ++ + 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L++FYSK G + + ++VFR M  R+ V+WS+++   A N    +A + F+ M+     
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  +TF+ +L AC++  M+++       +K   G+   +     ++ +  + G +  A E
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACE 235

Query: 403 YIQNMLMPPNAVIWRTLLGACTIH 426
             Q M    N V W  ++ A   H
Sbjct: 236 IFQKM-KERNVVSWTAIIQANAQH 258



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I++L+ C   S+  + K VHA +++ G  L +  +    +  + S    ++ A  +F  +
Sbjct: 522 ISILEACGALSALERGKLVHAEAVKLG--LESDTVVATSLIGMYSKCGEVTEARTVFDKI 579

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            + +   WN M+ GY +      AV+L+ +M    + P+  T+  ++ A  +   V+ G 
Sbjct: 580 SNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGR 639

Query: 164 QTHSVAIRNGFESLVFVQN--SLVHMYAAFGHVKDACKVFELM-SERDLVAWNSVINGFA 220
           +   + ++  F      Q+   +V +    G +++A +  + M  E D+  W++++    
Sbjct: 640 EIFRI-MQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACK 698

Query: 221 S 221
           S
Sbjct: 699 S 699


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 348/580 (60%), Gaps = 15/580 (2%)

Query: 46   ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIF 100
            I+ L  CAS       +Q+H   ++ G+     DL   +  A+++L     Y       F
Sbjct: 494  ISALSSCASLGWISVGEQLHCEGLKLGL-----DLDVSVSNALLALYGECGYVKECQKAF 548

Query: 101  SHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
            S + D +  +WN++I   A+S   +L AVE +  M  +G  P+  T+  +L A+S L+  
Sbjct: 549  SLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLH 608

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVING 218
             +G+Q H++ ++    +   ++N+L+  Y   G +     +F  MS+R D V+WNS+I+G
Sbjct: 609  ELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG 668

Query: 219  FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            +  N    +A+ +   M  +G   DG+T  ++ SACA +  L  G   H    +  L  +
Sbjct: 669  YIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESD 728

Query: 279  VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            + + +AL+D Y+KCG I  A R F  M  RN  SW++++ G A +G G ++L+LF +M++
Sbjct: 729  IVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKL 788

Query: 339  GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             G +P  VTFVGVL ACSH G+V+EGFS+F  M + YG+ P++EHF CMVDLLGR G + 
Sbjct: 789  QGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELN 848

Query: 399  QAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
            +  +++  M + PN +IWRT+LGAC      ++A+   A   LL++EP ++ +Y+LLSN+
Sbjct: 849  KMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNM 908

Query: 457  YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
            YA   +W +V + R  M K  VKK  G S V + + V  F  GD+SHP+ + I+  L E+
Sbjct: 909  YASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKEL 968

Query: 517  TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
              K++L GY+P T     D+E E KE+ LSYHSEKIA+AF+L   +   P+R++KNLRVC
Sbjct: 969  NGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAFVLTRPSK-MPIRILKNLRVC 1027

Query: 577  ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             DCH A K IS++  R+IV+RD +RFHHF++G CSC D+W
Sbjct: 1028 GDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 151/278 (54%), Gaps = 7/278 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA NIF  +   N+ + N +I G         AVEL+ +M  S ++ + ++Y  +L A
Sbjct: 335 IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMIILTA 393

Query: 153 ISKLADV----RMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
             +   +    R G + H+  IR+G   + + + N L++MYA  G + DAC VF LM  +
Sbjct: 394 FPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNK 453

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V WNS+I G   N +  EA+  F+EM    + P  +TM+S  S+CA LG +++G + H
Sbjct: 454 DSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLH 513

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
               K+GL  +V+V+NALL  Y +CG +   Q+ F  M   + VSW++L+  LA +    
Sbjct: 514 CEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSM 573

Query: 328 -EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            EA+E F  M   G+ P  VTF+ +L A S   + + G
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELG 611



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 12/264 (4%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           IYA V     +     +F  +   N+ +W+ +I GY  +  P  A EL+ KM   G  P+
Sbjct: 117 IYARVG---DLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPN 173

Query: 143 THTYPFLLKAISKLAD--VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACK 199
            + +  +++A  +  +  ++ G Q H +  +  + + V   N L+ MY  A G V  A +
Sbjct: 174 HYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARR 233

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLF----REMASEGVEPDGYTMVSLFSACA 255
            F+ +  R+LV+ NS+I+ +   G    A  +F    +E+  +G++P+ YT  SL SA  
Sbjct: 234 AFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATC 293

Query: 256 ELG--ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
            L    L L  +  T V K G   ++ V +AL+  ++K G I  A+ +F++M  RN VS 
Sbjct: 294 SLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSL 353

Query: 314 STLVVGLAVNGFGKEALELFKEME 337
           + L++GL     G+EA+ELF EM+
Sbjct: 354 NGLIIGLVRQKRGEEAVELFMEMK 377



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 12/256 (4%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
            E+ H    +NGF + +F+ N+L+++YA  G +    KVF+ M  R+LV+W+ +I+G+  
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG--ALALGRRAHTYVWKVGLSDNV 279
           N  PNEA  LFR+M S+G  P+ Y   S+  AC E G   L  G + H  + K    ++V
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 280 NVNNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF----K 334
             +N L+  Y    G++  A+R F  +  RN VS ++++      G    A ++F    K
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM---KDEYGIMPKIEHFGCMVDLL 391
           E+   G  P E TF  ++ A   C + + G    +++    ++ G +  +     +V   
Sbjct: 272 EVMGDGLKPNEYTFGSLISAT--CSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 392 GRAGLVKQAYEYIQNM 407
            +AG +  A    Q M
Sbjct: 330 AKAGSIGYAKNIFQKM 345


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 315/521 (60%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  TW TM+ G+ ++     A+  + +M   GI  D +T+  +L A   
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L+ +  G+Q H+  IR  ++  VFV ++LV MY+    +K A   F  MS +++++W ++
Sbjct: 285 LSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTAL 344

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  NG   EA+ +F EM  +G++PD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  A R+F EM   + VSW+ LV G A  G  KE ++LF++
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEK 464

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  VTF+GVL ACS  G V++G SYF  M+ ++GI+P  +H+ CM+DL  R+G
Sbjct: 465 MLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSG 524

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +K+A E+I+ M M P+A+ W TLL AC + G   I + A   LL+++P++   YVLL +
Sbjct: 525 RLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCS 584

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A +  W  V ++RR M   +VKK PG S ++  N+V  F   D+SHP ++ I+  L  
Sbjct: 585 MHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEW 644

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + +K   +S+HSEK+AIAF L+      P+R+VKNLRV
Sbjct: 645 LNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRV 704

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A KLISK+  R+I+VRD  RFH F +G CSC D+W
Sbjct: 705 CVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 35/356 (9%)

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISK 155
           ++F+ +   +  ++N +I G++       AV LY  +  +G  ++P   T   ++ A S 
Sbjct: 93  SLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASA 152

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA------------------ 197
           L D  +G Q H   +R GF    FV + LV MYA  G + DA                  
Sbjct: 153 LGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 198 ------CK-------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                 CK       +FE+M++RD + W +++ GF  NG  ++AL  FR M  +G+  D 
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           YT  S+ +AC  L AL  G++ H Y+ +    DNV V +AL+D YSKC  I  A+  FR 
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRR 332

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M  +N +SW+ L+VG   NG  +EA+ +F EM+  G  P + T   V+ +C++   ++EG
Sbjct: 333 MSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG 392

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            + F  +    G+M  I     +V L G+ G ++ A+     ML   + V W  L+
Sbjct: 393 -AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLF-HDQVSWTALV 446



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 45/261 (17%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKD 196
           P TH    LL A  K          H+ A R  F++     +F  N+L+   A    + D
Sbjct: 39  PPTHLLNHLLTAYGKAG-------RHARA-RRVFDATPHPNLFTYNALLSTLAHARLLDD 90

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSAC 254
              +F  M++RD V++N+VI GF+  G    A+ L+  +  A   V P   TM ++  A 
Sbjct: 91  MDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAA 150

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV--- 311
           + LG  ALGR+ H  + ++G   N  V + L+  Y+K G+I  A+RVF EM  +N V   
Sbjct: 151 SALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYN 210

Query: 312 ----------------------------SWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
                                       +W+T+V G   NG   +AL  F+ M   G   
Sbjct: 211 TMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAI 270

Query: 344 GEVTFVGVLYACSHCGMVDEG 364
            + TF  +L AC     +++G
Sbjct: 271 DQYTFGSILTACGALSALEQG 291


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 347/573 (60%), Gaps = 5/573 (0%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           ++++  C  S +      VH +S+R G+ ++   LG  L+    + S   S  + IF ++
Sbjct: 89  LSVMPACVQSHYSFIGGVVHGYSVRTGL-ISETSLGNALLDMYSNCSDWRS-TNKIFRNM 146

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +  N+ +W  MI  Y  + +      L+ +M + GI+PD       L A +    ++ G+
Sbjct: 147 EQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGK 206

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H  AIRNG E ++ V N+L+ MY   G++++A  +F+ ++++D ++WN++I G++ + 
Sbjct: 207 SVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSN 266

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             NEA TLF EM  + + P+  TM  +  A A L +L  GR  H Y  + G  ++  V N
Sbjct: 267 LANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVAN 325

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y KCG ++ A+R+F  +  +N +SW+ ++ G  ++G G++A+ LF++M+  G  P
Sbjct: 326 ALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQP 385

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
              +F  +LYACSH G+ DEG+ +F  M++E+ I PK++H+ CMVDLL   G +K+AYE+
Sbjct: 386 DAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEF 445

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I+ M + P++ IW +LL  C IH +  +AE     + +LEP+++G YVLL+N+YA  +RW
Sbjct: 446 IETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERW 505

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
             V++++  +    +++  G S +E+  +   FF  +R+HPQ   I   L ++ ++++ E
Sbjct: 506 EAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEE 565

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           G+ P+ +      ++   ++AL  HS K+A+AF ++N + G P+RV KN RVC+ CH A 
Sbjct: 566 GHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAA 625

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K ISK+  REI++RD +RFHHF++G CSCR YW
Sbjct: 626 KFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 163/333 (48%), Gaps = 11/333 (3%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   +I +WN++I G A +     AVEL+ +M + G + D+ T   ++ A  +   
Sbjct: 41  VFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHY 100

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
             +G   H  ++R G  S   + N+L+ MY+     +   K+F  M ++++V+W ++I  
Sbjct: 101 SFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITS 160

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +   G  ++   LF+EM  EG+ PD + + S   A A   +L  G+  H Y  + G+ + 
Sbjct: 161 YTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEV 220

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V NAL++ Y KCG +  A+ +F  + K++ +SW+TL+ G + +    EA  LF EM +
Sbjct: 221 LPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL 280

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI--EHF--GCMVDLLGRA 394
               P  VT   +L A +    ++ G     R    Y +      ++F    +VD+  + 
Sbjct: 281 -QLRPNAVTMACILPAAASLSSLERG-----REMHAYAVRRGYLEDNFVANALVDMYVKC 334

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G +  A     +ML   N + W  ++    +HG
Sbjct: 335 GALLLARRLF-DMLTNKNLISWTIMIAGYGMHG 366



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 17/292 (5%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   H   ++ GF +   V N+L+  YA    ++DA  VF+ M +RD+++WNS+I G AS
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG  ++A+ LF  M  EG E D  T++S+  AC +     +G   H Y  + GL    ++
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NALLD YS C    +  ++FR M ++N VSW+ ++      G   +   LF+EM + G 
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF----GCMVDLLGRAGLV 397
            P        L A +     +E   + K +   Y I   IE        ++++  + G +
Sbjct: 183 RPDVFAITSALDAFAG----NESLKHGKSVHG-YAIRNGIEEVLPVANALMEMYVKCGYM 237

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA----RSTLLQLEPK 445
           ++A  +I + +   + + W TL+G    +  S +A  A       LLQL P 
Sbjct: 238 EEA-RFIFDHVTKKDTISWNTLIGG---YSRSNLANEAFTLFNEMLLQLRPN 285



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSY 95
            +V   CI       SS  + +++HA+++R G   +N     ++  A+V +      +  
Sbjct: 285 NAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDN-----FVANALVDMYVKCGALLL 339

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ +W  MI GY        A+ L+ +M  SGI+PD  ++  +L A S 
Sbjct: 340 ARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSH 399

Query: 156 LADVRMGEQTHSVAIRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAW 212
            + +R        A+RN    E  +     +V +    G++K+A +  E M  E D   W
Sbjct: 400 -SGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIW 458

Query: 213 NSVING 218
            S++ G
Sbjct: 459 VSLLRG 464


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/614 (36%), Positives = 350/614 (57%), Gaps = 20/614 (3%)

Query: 10  QPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRH 69
           + SY+E++ L  ++++          +P +S +   +  +    S +H  K++H F +R 
Sbjct: 199 EGSYDEVARLLVQMQN--------DVSPNSSTIVGVLPAVAQVNSLRHG-KEIHGFCVRR 249

Query: 70  GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAV 128
           G  + +  +G   I  +      + YA  IF  +    N  TW+ M+  Y        A+
Sbjct: 250 GF-VGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREAL 307

Query: 129 ELYSKMHVSGIKPDTH-----TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
           EL+ ++ +  +K D       T   +++  + L D+  G   H  AI++GF   + V N+
Sbjct: 308 ELFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNT 365

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           L+ MYA  G +  A + F  M  RD V++ ++I+G+  NG   E L +F EM   G+ P+
Sbjct: 366 LLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPE 425

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
             T+ S+  ACA L  L  G  +H Y    G + +  + NAL+D Y+KCG I  A++VF 
Sbjct: 426 KATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFD 485

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
            M KR  VSW+T+++   ++G G EAL LF  M+  G  P +VTF+ ++ ACSH G+V E
Sbjct: 486 RMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAE 545

Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           G  +F  M  ++GI+P++EH+ CMVDLL RAGL K+ + +I+ M + P+  +W  LL AC
Sbjct: 546 GKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSAC 605

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
            ++ +  + E     + +L P+ +G++VLLSN+Y+   RW +  +VR T  ++  +K+PG
Sbjct: 606 RVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPG 665

Query: 484 HSLVELGNRVFEFFMGD-RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
            S +E+   V  F  G  RSHPQ  +I   L E+  ++K  GY   +  VF D+EEEEKE
Sbjct: 666 CSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKE 725

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
             L YHSEK+AIAF +++ +P   + V KNLRVC DCH AIK IS V  R+I VRD SRF
Sbjct: 726 RVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRF 785

Query: 603 HHFKDGHCSCRDYW 616
           HHFKDG C+C D+W
Sbjct: 786 HHFKDGICNCGDFW 799



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 171/349 (48%), Gaps = 32/349 (9%)

Query: 45  CITLLQVCASSK----------HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           C  LL+ C  SK          H LK +H     H   L N D+    +  +      + 
Sbjct: 12  CTVLLESCIQSKSLFRGKLIHQHLLKCLHR---THETNLTNFDVPFEKLVDLYIACSELK 68

Query: 95  YAHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
            A ++F  +  +  N+  WN +IR YA +     A++LY KM   GI P+  T+PF+LKA
Sbjct: 69  IARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKA 128

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L +   G + H    R   ES V+V  +LV  YA  G + DA +VF+ M +RD+VAW
Sbjct: 129 CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAW 188

Query: 213 NSVINGFA-SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           NS+I+GF+   G  +E   L  +M ++ V P+  T+V +  A A++ +L  G+  H +  
Sbjct: 189 NSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCV 247

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEAL 330
           + G   +V V   +LD Y KC  I  A+R+F  M   +N V+WS +V    V  F +EAL
Sbjct: 248 RRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREAL 307

Query: 331 ELFKEMEI---GGFVPGEVTFVGVLYACS-----------HCGMVDEGF 365
           ELF ++ +      V   VT   V+  C+           HC  +  GF
Sbjct: 308 ELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGF 356


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 347/592 (58%), Gaps = 16/592 (2%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           ASQ   + S+V+  +  +  C S  +    +HA  I+    LN  D   ++   +VS+ F
Sbjct: 112 ASQFIVVYSIVQSLVFAISSCTSVSY-CSAIHARVIK---SLNYSD--GFIGDRLVSMYF 165

Query: 92  PMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYP 147
            + Y   A  +F  + + ++ +WN+++ G +        +  + +M   SG +P+  T  
Sbjct: 166 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 225

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            ++ A + +  +  G+  H V ++ G      V NSL++MY   G +  A ++FE M  R
Sbjct: 226 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR 285

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA- 266
            LV+WNS++     NG   + + LF  M   G+ PD  TMV+L  AC + G   LGR+A 
Sbjct: 286 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG---LGRQAE 342

Query: 267 --HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
             H Y+ + G + ++ +  ALL+ Y+K G + A++ +F E++ R+ ++W+ ++ G AV+ 
Sbjct: 343 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHA 402

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            G+EA++LF  M   G     VTF  +L ACSH G+V+EG  YF+ M + Y + P+++H+
Sbjct: 403 CGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY 462

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
            CMVDLLGR+G ++ AYE I++M M P++ +W  LLGAC ++G+  + +     LL L+P
Sbjct: 463 SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDP 522

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
               +Y++LSN+Y+    W +  +VR  M + R+ + PG S +E GN++  F +GD+ HP
Sbjct: 523 SDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHP 582

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +++EIH  L E+ +K++  G  P+TE V  DI+EE K D ++ HSEK+AIAF L+ T  G
Sbjct: 583 RSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSG 642

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            P+ + KNLR+C DCH   K  S +  R I++RD  RFHHF DG CSCRDYW
Sbjct: 643 VPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 336/571 (58%), Gaps = 3/571 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + L Q  + S  K +Q+HA  I+ G+ +  P +  YLI        P+  +  +F   + 
Sbjct: 60  LLLSQTRSRSLLKGQQIHAHIIKSGLQVI-PLVCHYLINFYSKTQLPL-LSSQVFEESER 117

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            +  TW+++I  +A++  P+LA++ + +M    + PD H +P   KA + L    +G+  
Sbjct: 118 KSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSV 177

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H + I+ G++  VFV +SLV MYA  G +K+A  VF+ M  R++V+W+ +I G+   G+ 
Sbjct: 178 HCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEH 237

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA+ LF+E   EG++ + +T+ S+   C     L LG++ H   +K     +  V ++L
Sbjct: 238 EEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSL 297

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +  YSKCG+I  A RVF E+  +N   W+ +++  A +   KEA +LF +ME  G  P  
Sbjct: 298 ISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNF 357

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           +TF+ VLYACSH G+V+EG  YF  MK +Y I P  +H+  MVDLLGRAG +++A   I+
Sbjct: 358 ITFLCVLYACSHAGLVEEGKKYFALMK-KYEIEPGTQHYASMVDLLGRAGKLQEALSVIK 416

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M   P   +W   +  C IHG++ +A  A   + +L    SG +V+LSN YA   R+ +
Sbjct: 417 GMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYED 476

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             + R+ +    VKK  G S +E GNRV +F  GDR H + +EI+  L ++ ++++  GY
Sbjct: 477 AAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGY 536

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           V  T  V  ++  EEK   + YHSE++AIAF L++   G P+R++KNLRVC DCH AIK 
Sbjct: 537 VADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKF 596

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ISK+  R I+VRD +RFH F+DG CSC DYW
Sbjct: 597 ISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/530 (43%), Positives = 314/530 (59%), Gaps = 36/530 (6%)

Query: 123 NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESLVFVQ 181
           NP LA+ L+  +  SG  PD   Y     + ++  D     Q H+ A + G   S   V+
Sbjct: 55  NPHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVR 114

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS-------------------- 221
             LVH YA  G +  A +VF+  ++ D+VAWN ++ G+A                     
Sbjct: 115 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDS 174

Query: 222 ------------NGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
                       NG+ +EA+ +FREM AS+  +PD  T+VS+ SA A LGALA G  AH 
Sbjct: 175 VSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHA 234

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGK 327
           YV++  +     +++AL++ YSKCG I  A  VF  +  KR+  +W+ ++ G   NG+ +
Sbjct: 235 YVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSE 294

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
            ALELF  ME    +P ++TF  VL ACSH G+V+EG  YF+RM   YGI P I H+GCM
Sbjct: 295 RALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCM 354

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           VDL  RAG+ ++A E IQ M M P+A + + LLGAC  H +  + +     L++      
Sbjct: 355 VDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDH 414

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
             YVLLSN+YA +  W  V +VR+ M+   V KTPG S VEL   + EF  GD+SH +  
Sbjct: 415 AGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKR 474

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTP 566
           +I+ ML EI ++LK  GY P T  V  DI++E+ KE +L+ HSEK+AIAF L++TAPGTP
Sbjct: 475 DIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTP 534

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +RVV NLR+C DCH AIKLISK+Y R I+VRD +RFHHF+ G CSC DYW
Sbjct: 535 IRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/521 (40%), Positives = 314/521 (60%), Gaps = 1/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +W ++I GYA++  P  A+ L   M     KP+  T+  LLKA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A   +GEQ H++ ++  +   V+V ++L+ MYA  G +  A  VF+ +  ++ V+WN++
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA  G     L +F EM   G E   +T  S+FSA A +GAL  G+  H ++ K G 
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +  V N +LD Y+K G +I A++VF  + K++ V+W++++   A  G G+EA+  F+E
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEE 357

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G    ++TF+ +L ACSH G+V EG  YF  MK EY + P+I+H+  +VDLLGRAG
Sbjct: 358 MRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAG 416

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  A  +I  M M P A +W  LLG+C +H ++ I + A   + +L+P  +G  VLL N
Sbjct: 417 LLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYN 476

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W     VR+ M    VKK P  S VE+ N V  F   D +HP++EEI+    E
Sbjct: 477 IYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEE 536

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ +++  GYVP T+ V   ++E+E++  L YHSEKIA+AF L+N   G  +R++KN+R+
Sbjct: 537 ISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRI 596

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A + ISKV+ REIVVRD +RFHHF  G CSC DYW
Sbjct: 597 CGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  L+ A ++   +      H+    + F   VF+ NSL+H+Y   G V DA +VF+ M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            RD+ +W S+I G+A N  P+EAL L   M     +P+G+T  SL  A     +  +G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    K    D+V V +ALLD Y++CG +  A  VF ++  +N VSW+ L+ G A  G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G+  L +F EM+  GF     T+  V  A +  G +++G
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  ++  N  +WN +I G+A   +    + ++++M  +G +    TY  +  A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           I+ +  +  G+  H+  I++G     FV N+++ MYA  G + DA KVF+ + ++D+V W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS++  FA  G   EA+T F EM   GV  +  T +S+ +AC+  G +  G++    + +
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQR-VFREMRKRNAVSWSTLV 317
             L   ++    ++D   + G++  A   +F+   K  A  W  L+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 329/561 (58%), Gaps = 9/561 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           K VH F +R G   N      ++  A+V +      M  A  +F  + + N+ +WN ++ 
Sbjct: 142 KSVHCFWVRGGFEGN-----VFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVS 196

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY++      A++L++ M   G+  D +T   L+ A   +  +++G   H   IR G+E+
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYEN 256

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              ++ +L+ +Y +   V DA +VF  M  +D+ AW  ++ GF+S    + A+  F +M 
Sbjct: 257 DKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKML 316

Query: 237 S-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             + ++ D   ++ + S+C+  GAL  GRR H    K   ++N+ V +A++D Y+ CG +
Sbjct: 317 GIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNL 376

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+R F  M +++ V W+ ++ G  +NG+G +A++LF +M+  G  P E TFV VLYAC
Sbjct: 377 EDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYAC 436

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH GMV EG   F  M      +P ++H+ C++D+LGRAG +  AY +I NM   P+  +
Sbjct: 437 SHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDV 496

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           + TLLGAC IHG+  +       + ++EP  +G YVLLSN+YA    W  V+  R ++  
Sbjct: 497 YSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRS 556

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           +R+KK PG S +E+   ++ F  G++ HPQ  +I  +L  +  K+K  GYVP T  +  D
Sbjct: 557 KRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQD 616

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           + ++ K+D L +HSEK+AIAF L+ T PGT +R+ KNLR C DCH A K +SKV+ R +V
Sbjct: 617 VSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLV 676

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           ++D +RFH F+DG CSCRDYW
Sbjct: 677 IKDANRFHVFQDGVCSCRDYW 697



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 203/403 (50%), Gaps = 10/403 (2%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+Q+HA  I  G+  +N  L   L+ A V     ++ A  IF H    N+ +W  +I G 
Sbjct: 40  LQQIHAQIITSGLT-HNTFLSNSLMNAYVYCGL-LADAKQIFHHTPCKNVVSWTILISGL 97

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           A++   + A++++ +M +   KP+  T   +L A + L  +R+ +  H   +R GFE  V
Sbjct: 98  AKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNV 157

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV+ +LV MY+ FG +  A ++FE MSER++V+WN++++G++ +G   EA+ LF  M  +
Sbjct: 158 FVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRK 217

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+  D YT++SL  A   +G L +G   H ++ + G  ++ ++  AL+D Y     +  A
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSH 357
            RVF EM  ++  +W+ ++ G +       A++ F +M  I       +  +G+L +CSH
Sbjct: 278 HRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G + +G      +  +      I     ++D+    G ++ A  +   M    + V W 
Sbjct: 338 SGALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM-GEKDVVCWN 395

Query: 418 TLLGACTIHGH--SAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
            ++    ++G+   AI    +     L+P  S     +S LYA
Sbjct: 396 AMIAGNGMNGYGTDAIDLFLQMKGSGLDPDES---TFVSVLYA 435



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 116/212 (54%)

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           + KL D++  +Q H+  I +G     F+ NSL++ Y   G + DA ++F     +++V+W
Sbjct: 31  LRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSW 90

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
             +I+G A N    EA+ +FREM     +P+  T+ S+  A A LG + + +  H +  +
Sbjct: 91  TILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVR 150

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G   NV V  AL+D YSK G +  A+++F  M +RN VSW+ +V G + +GF +EA++L
Sbjct: 151 GGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDL 210

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           F  M   G +    T + ++ A    G +  G
Sbjct: 211 FNLMRRKGLLVDFYTIMSLIPASLSVGCLQVG 242


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 323/518 (62%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   ++  W+ MI  YA+S     AVEL+ +M  + + P+  T+  +L++ + + +
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIEN 258

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +++G+Q H   ++ G +  VFV N+L+ +YA  G + ++ K+F  +  R+ V WN++I G
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +G  ++AL+L++ M    V+    T  S+  ACA L A+ LG + H+   K     +
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V NAL+D Y+KCG I  A+ VF  + +R+ +SW+ ++ G +++G   EAL+ F+ M+ 
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
              VP ++TFV +L ACS+ G++D G +YFK M  +YGI P +EH+ CMV LLGR+G + 
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A + I+ + + PN  +WR LLGAC IH    +  ++   +LQ++P+    +VLLSN+YA
Sbjct: 499 KAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             +RW +V  VR+ M  + VKK PG S +E    V  F +GD SHP  + I  ML  +  
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K +  GYVP    V  D+E++EK+  L  HSE++A+AF L+ T     +R++KNLR+C D
Sbjct: 619 KTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTD 678

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH AIKLISK+  R+I++RD +RFHHF+DG CSC DYW
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 218/420 (51%), Gaps = 24/420 (5%)

Query: 14  EEISDLPCRVKSLYHSTPASQENPI--TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGV 71
           +E+ DL  RV    H     + NP   T++++  +++   CA   + L   HA   + G 
Sbjct: 23  DEVVDLFSRVHREGH-----ELNPFVFTTILKLLVSV--ECAELAYSL---HACIYKLGH 72

Query: 72  PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
             +N  +G  LI A  ++   ++ A   F  +   ++ +W  M+  YAE+     +++L+
Sbjct: 73  E-SNAFVGTALIDA-YAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF 130

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           ++M + G  P+  T+  +LKA   L    +G+  H   ++  +E  ++V   L+ +Y  F
Sbjct: 131 AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKF 190

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G   D  +VFE M + D++ W+ +I+ +A + +  EA+ LF +M    V P+ +T  S+ 
Sbjct: 191 GDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVL 250

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
            +CA +  L LG++ H +V KVGL  NV V+NAL+D Y+KCG +  + ++F E+  RN V
Sbjct: 251 QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEV 310

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY---- 367
           +W+T++VG   +G G +AL L+K M        EVT+  VL AC+    ++ G       
Sbjct: 311 TWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLS 370

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            K + D+  ++        ++D+  + G +K A   + +ML   + + W  ++   ++HG
Sbjct: 371 LKTIYDKDVVVGN-----ALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHG 424



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 130/252 (51%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           D N  ++ T+I+GY +S      V+L+S++H  G + +   +  +LK +  +    +   
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+   + G ES  FV  +L+  YA  G V  A + F+ ++ +D+V+W  ++  +A N +
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             ++L LF EM   G  P+ +T   +  AC  L A ++G+  H  V K     ++ V   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           LLD Y+K G      RVF EM K + + WS ++   A +   +EA+ELF +M     +P 
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 345 EVTFVGVLYACS 356
           + TF  VL +C+
Sbjct: 243 QFTFASVLQSCA 254



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 82/152 (53%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M +R+ V++ ++I G+  + + +E + LF  +  EG E + +   ++      +    L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H  ++K+G   N  V  AL+D Y+ CG + +A++ F  +  ++ VSW+ +V   A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
              +++L+LF EM + GF P   TF GVL AC
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152



 Score = 38.5 bits (88), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 24  KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL--GKY 81
           K++      + E   +SV+R C +L     ++     Q+H+ S++    + + D+  G  
Sbjct: 333 KNMLECQVQASEVTYSSVLRACASL-----AAMELGTQIHSLSLK---TIYDKDVVVGNA 384

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           LI  + +    +  A  +F  + + +  +WN MI GY+       A++ +  M  +   P
Sbjct: 385 LI-DMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVP 443

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKV 200
           +  T+  +L A S    + +G+      +++ G E  +     +V +    GH+  A K+
Sbjct: 444 NKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKL 503

Query: 201 FELMS-ERDLVAWNSVI 216
            E +  E ++  W +++
Sbjct: 504 IEEIPLEPNVKVWRALL 520


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 313/511 (61%), Gaps = 5/511 (0%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ +W  MI G  ++ +  LA  L+S+M   G+ P+  TY  +L A    +   +  Q H
Sbjct: 372 NVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA----SVASLPPQIH 427

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           +  I+  +E    V  +L+  Y+   + ++A  +F+++ ++D+V+W++++  +A  G  +
Sbjct: 428 AQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSD 487

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            A  +F +M   G++P+ +T+ S+  ACA     + LGR+ H    K    D + V++AL
Sbjct: 488 GATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSAL 547

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +  Y++ G I +AQ +F     R+ VSW++++ G A +G+ ++AL++F++ME  G     
Sbjct: 548 VSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDG 607

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTF+ V+  C+H G+V+EG  YF  M  +YGI P +EH+ CMVDL  RAG + +A   I+
Sbjct: 608 VTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIE 667

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M  P   ++WRTLLGAC +H +  + ++A   LL LEP  S  YVLLSN+Y+   +W  
Sbjct: 668 GMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKE 727

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
             EVR+ M  ++VKK  G S +++ N+V  F   D+SHP +E+I+A L  +T KLK EGY
Sbjct: 728 KDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGY 787

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
            P T     ++ EE+KE  L+ HSE++A+AF L+ T PG P+ + KNLRVC DCH  IK+
Sbjct: 788 CPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKM 847

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +SK+  REIV+RD SRFHHF  G CSC D+W
Sbjct: 848 VSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + +L+VC S   ++  KQ+H   IR G    +  +G  L+   +     +     +F  +
Sbjct: 107 VGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVD-GRKVFEAM 165

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
              N+ TW +++ GY +       +EL+ +M   G+ P++ T+  +L  ++    V +G 
Sbjct: 166 PKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGR 225

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H+ +++ G  S VFV NSL++MYA  G V++A  VF  M  RD+V+WN+++ G   NG
Sbjct: 226 RVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNG 285

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              EAL LF +  S        T  ++   CA +  L L R+ H+ V K G     NV  
Sbjct: 286 HDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMT 345

Query: 284 ALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           AL+D YSK G +  A  +F  M   +N VSW+ ++ G   NG    A  LF  M   G  
Sbjct: 346 ALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVA 405

Query: 343 PGEVTFVGVLYA 354
           P + T+  +L A
Sbjct: 406 PNDFTYSTILTA 417



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 10/289 (3%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           +LK    + D  +G+Q H + IR G +   V V  SLV MY  +  V D  KVFE M +R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           ++V W S++ G+  +G  ++ + LF  M +EGV P+  T  S+ S  A  G + LGRR H
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
               K G    V V N+L++ Y+KCG++  A+ VF  M  R+ VSW+TL+ GL +NG   
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDL 288

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHC---GMVDE-GFSYFKRMKDEYGIMPKIEH 383
           EAL+LF +      +  + T+  V+  C++    G+  +   S  KR    YG +     
Sbjct: 289 EALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV----- 343

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
              ++D   +AG +  A +    M    N V W  ++  C  +G   +A
Sbjct: 344 MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLA 392



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 142/271 (52%), Gaps = 14/271 (5%)

Query: 81  YLIYAIVSLSFPMSY--------AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYS 132
           Y   +IV  +   SY        A +IF  +   ++ +W+ M+  YA++ +   A  ++ 
Sbjct: 435 YECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFI 494

Query: 133 KMHVSGIKPDTHTYPFLLKAI-SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           KM + G+KP+  T   ++ A  S  A V +G Q H+++I++     + V ++LV MYA  
Sbjct: 495 KMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARK 554

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G ++ A  +FE  ++RDLV+WNS+++G+A +G   +AL +FR+M +EG+E DG T +S+ 
Sbjct: 555 GSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVI 614

Query: 252 SACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRN 309
             CA  G +  G+R    + +  G++  +     ++D YS+ G +  A  +   M     
Sbjct: 615 MGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAG 674

Query: 310 AVSWSTLVVGLAVNG---FGKEALELFKEME 337
            + W TL+    V+     GK A E    +E
Sbjct: 675 PMVWRTLLGACKVHKNVELGKLAAEKLLSLE 705



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 47  TLLQVCASSKHKL---KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++  CAS    +   +Q HA SI+H    ++       + ++ +    +  A  IF   
Sbjct: 510 SVIDACASPTAGVDLGRQFHAISIKH--RCHDALCVSSALVSMYARKGSIESAQCIFERQ 567

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            D ++ +WN+M+ GYA+      A++++ +M   GI+ D  T+  ++   +    V  G+
Sbjct: 568 TDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQ 627

Query: 164 QTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           +      R+ G    +     +V +Y+  G + +A  + E MS
Sbjct: 628 RYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMS 670


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/599 (35%), Positives = 350/599 (58%), Gaps = 19/599 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           +L+  +P  Q   + S+V+  +  +  C S  +    +HA  I+    LN  D   ++  
Sbjct: 51  NLFQLSPPFQ---VYSIVQSLVFAISSCTSVSY-CSAIHARVIK---SLNYSD--GFIGD 101

Query: 85  AIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIK 140
            +VS+ F + Y   A  +F  + + ++ +WN+++ G +        +  + +M   SG +
Sbjct: 102 RLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 161

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P+  T   ++ A + +  +  G+  H V ++ G      V NSL++MY   G +  A ++
Sbjct: 162 PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 221

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           FE M  R LV+WNS++     NG   + + LF  M   G+ PD  TMV+L  AC + G  
Sbjct: 222 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG-- 279

Query: 261 ALGRRA---HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            LGR+A   H Y+ + G + ++ +  ALL+ Y+K G + A++ +F E++ R+ ++W+ ++
Sbjct: 280 -LGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 338

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
            G AV+  G+EA++LF  M   G     VTF  +L ACSH G+V+EG  YF+ M + Y +
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
            P+++H+ CMVDLLGR+G ++ AYE I++M M P++ +W  LLGAC ++G+  + +    
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 458

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            LL L+P    +Y++LSN+Y+    W +  +VR  M + R+ + PG S +E GN++  F 
Sbjct: 459 QLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFV 518

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
           +GD+ HP+++EIH  L E+ +K++  G  P+TE V  DI+EE K D ++ HSEK+AIAF 
Sbjct: 519 VGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFG 578

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+ T  G P+ + KNLR+C DCH   K  S +  R I++RD  RFHHF DG CSCRDYW
Sbjct: 579 LLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/559 (39%), Positives = 326/559 (58%), Gaps = 13/559 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+H  +++ G   +    G   +  + S    +  A  +F  + D ++  WN++I GYA
Sbjct: 132 KQIHGLALKIGFGSDVFVQGS--LVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYA 189

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT-HSVAIRNGFESLV 178
                 +A++L+ +M     + D  ++  L+  +SK   V    +    +  RN     +
Sbjct: 190 RCGEIDIALQLFEEMP----ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRN-----L 240

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              N++++ Y   G    A ++F  M   DLV WN +I G+  NG+  +A+ +F  M   
Sbjct: 241 VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKL 300

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G  P   T+VS+ SA + L  L  GR  H+Y+ K G   +  +  +L++ Y+KCG I +A
Sbjct: 301 GSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 360

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             VFR ++K+    W+ ++VGL ++G    AL LF EM   G  P  + F+GVL AC+H 
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+VD+G  YF  M +EY I P +EH+GC+VD+L RAG +++A   I+NM + PN VIW +
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG    HG   I E A   ++++ P+  G Y+LLSN+YA    W  V  VR  M K   
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE- 537
           +K PG S VE    + EF +GD SHPQT+EI+A ++E+ +KLK  G+VP T  V   IE 
Sbjct: 541 RKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEG 600

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           E+EKE  L  HSE++AIAF L+N  PG P+R++KNLRVC DCH   KL+SK+YSREI+VR
Sbjct: 601 EKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVR 660

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHFK+G CSC DYW
Sbjct: 661 DNCRFHHFKNGSCSCMDYW 679



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 208/429 (48%), Gaps = 61/429 (14%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDP 106
           + +CA    +++Q+HAFS++  +  N+P +   L+  Y+   ++  + YA +IF  +Q  
Sbjct: 21  MGLCAP--QEVEQLHAFSLKTAI-FNHPFVSSRLLALYSDPKIN-DLGYARSIFDRIQRR 76

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++  WNT+I+ Y E+      + L+ ++ V    PD  T P ++K  ++L  V+ G+Q H
Sbjct: 77  SLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIH 135

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
            +A++ GF S VFVQ SLV+MY+  G +  A KVF+ M ++D+V WNS+I+G+A  G+ +
Sbjct: 136 GLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEID 195

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL LF EM     E D ++   L    ++ G +   R+    +       N+   NA++
Sbjct: 196 IALQLFEEMP----ERDAFSWTVLVDGLSKCGKVESARKLFDQM----PCRNLVSWNAMI 247

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           + Y K G   +A  +F +M   + V+W+ ++ G  +NG   +A+++F  M   G  P   
Sbjct: 248 NGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHA 307

Query: 347 TFVGVLYACS-----------------------------------HCGMVDEGFSYFKRM 371
           T V VL A S                                    CG ++   + F+ +
Sbjct: 308 TLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAI 367

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHGH 428
           + +     K+ H+  ++  LG  G+   A      M    + PNA+I+  +L AC    H
Sbjct: 368 QKK-----KVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN---H 419

Query: 429 SAIAEIARS 437
           + + +  R 
Sbjct: 420 AGLVDDGRQ 428


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 311/524 (59%), Gaps = 38/524 (7%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAI- 153
           A+ +F  +   ++ +WN MI G+A       A+E++ +  V  G  PD  T   +L A+ 
Sbjct: 177 AYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMG 236

Query: 154 -SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +K  D+R                  FV+                 +VF+ M  ++L++W
Sbjct: 237 NAKPDDIR------------------FVR-----------------RVFDNMQFKELISW 261

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N+++  +A+N    +A+ LF  M  + VEPD  T+ ++   C EL A ++G+R H  + +
Sbjct: 262 NAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKR 321

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             +  N+ + NAL+D Y+ CG +  A+ +F  M  R+ +SW++++     +G G+EA++L
Sbjct: 322 KNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDL 381

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F++M   G  P  + FV VL ACSH G++ +G  YF  M   Y I+PK EH+ CMVDLLG
Sbjct: 382 FEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLG 441

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +AY++I  ML+ PN  +W  LL AC IH +  I  +A   L  L P+ +G YVL
Sbjct: 442 RAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVL 501

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA   RW +V  VR  MV + +KK PG S+VELG++V  F +GDR HPQ+E I+  
Sbjct: 502 LSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHK 561

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+  K++  GY P  E    D+EEE+KED LS HSEK+AIAF+L+NT+PGT +RV  N
Sbjct: 562 LDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMN 621

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR C+DCHLA KLIS +  REIV++D +R HH   G CSC DYW
Sbjct: 622 LRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 333/562 (59%), Gaps = 12/562 (2%)

Query: 60  KQVHAFSIRH----GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           ++ HA++I+      + + N  +  Y+    +  S  +  +  I  H+      +W T++
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHI------SWTTIL 440

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
             +A+S+    A+E+  ++   GI  D+     +L+    L  + + +Q H  AIRNG  
Sbjct: 441 ACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL 500

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
            L+ ++N L+ +Y   G    +  +F+ + ++D+V+W S+IN   +NG+ N A+ LF EM
Sbjct: 501 DLI-LENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEM 559

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
               ++PD   +VS+  A A L +L  G++ H ++ +        V ++L+D YS CG +
Sbjct: 560 QKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSM 619

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A RVF   + ++ V W+ ++    ++G GK+A++LFK M   G  P  V+F+ +LYAC
Sbjct: 620 NYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYAC 679

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH  +V+EG  Y   M  +Y + P  EH+ C+VD+LGR+G  ++AYE+I+ M M P + +
Sbjct: 680 SHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAV 739

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC +H +  +A +A + LL+LEP + G+Y+L+SN++A   +W N +E R  M +
Sbjct: 740 WCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAE 799

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFA 534
             ++K P  S +E+GN +  F  GD  H  +E IH  L+EIT+ L+ E GYV  T  V  
Sbjct: 800 RGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLH 859

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D  EEEK D L  HSE+IAIAF L++T PG P+R+ KNLRVC DCH   KL+SK++ R+I
Sbjct: 860 DTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDI 919

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           VVRD +RFHHF  G CSC D+W
Sbjct: 920 VVRDANRFHHFSGGSCSCEDFW 941



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 166/316 (52%), Gaps = 11/316 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +QVHA ++  G  LN  D G +L   +V +      +  A  +F+ +    +F+WN ++ 
Sbjct: 77  RQVHAHAVTTG-SLNEDDDG-FLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 117 GYAESANPLLAVELYSKMHVS---GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
            Y  S +   A+ +Y  M  S   G  PD  T   +LKA     D R G + H +A++ G
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTL 231
            +    V N+L+ MYA  G +  A +VFE + +  RD+ +WNSV++G   NG+  EAL L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           FR M S G   + YT V++   CAELG L+LGR  H  + K G   N+   NALL  Y+K
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAK 313

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
            G + +A RVF ++ +++ +SW++++     N F  EA++ F EM   GF P     V +
Sbjct: 314 YGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSL 373

Query: 352 LYACSHCGMVDEGFSY 367
             A  H   ++ G  +
Sbjct: 374 SSALGHLSRLNNGREF 389



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 185/372 (49%), Gaps = 14/372 (3%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP--NIFTWNTMIRGY 118
           +VH  +++  V L+   L    +  + +    +  A  +F  +Q    ++ +WN+++ G 
Sbjct: 185 EVHGLAVK--VGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGC 242

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            ++   L A+ L+  M  +G   +++T   +L+  ++L  + +G + H+  ++ G E L 
Sbjct: 243 VQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE-LN 301

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              N+L+ MYA +G V  A +VF  ++E+D ++WNS+++ +  N    EA+  F EM   
Sbjct: 302 IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQH 361

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G +PD   +VSL SA   L  L  GR  H Y  K  L  ++ V N L+D Y KCG I  +
Sbjct: 362 GFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECS 421

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  M  R+ +SW+T++   A +    EALE+  E++  G +   +    +L  C  C
Sbjct: 422 AKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC--C 479

Query: 359 GMVDEGFSYFKRM---KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           G+  +  S  K++       G++  I     ++D+ G  G    +    Q  +   + V 
Sbjct: 480 GL--KSISLLKQVHCYAIRNGLLDLILE-NRLIDIYGECGEFDHSLNLFQR-VEKKDIVS 535

Query: 416 WRTLLGACTIHG 427
           W +++  CT +G
Sbjct: 536 WTSMINCCTNNG 547



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 19/368 (5%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF---ESLVFVQNSLVHMYAAFGHVKDA 197
           P    Y ++L  ++       G Q H+ A+  G    +   F+   LV MY   G V DA
Sbjct: 55  PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDA 114

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLF---REMASEGVEPDGYTMVSLFSAC 254
            ++F  M  R + +WN+++  + S+G   EA+ ++   R  A+ G  PDG T+ S+  AC
Sbjct: 115 RRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC 174

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVS 312
              G    G   H    KVGL  +  V NAL+  Y+KCG++ +A RVF  +++  R+  S
Sbjct: 175 GAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVAS 234

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+++V G   NG   EAL LF+ M+  GF     T V VL  C+  G++  G      + 
Sbjct: 235 WNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALL 294

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            + G    I+    +V +  + G V  A   +   +   + + W ++L     +   A A
Sbjct: 295 -KCGSELNIQCNALLV-MYAKYGRVDSALR-VFGQIAEKDYISWNSMLSCYVQNSFYAEA 351

Query: 433 EIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
                 +LQ   +P H+   V LS+   +  R  N +E     +K+R+     H+ +++G
Sbjct: 352 IDFFGEMLQHGFQPDHAC-VVSLSSALGHLSRLNNGREFHAYAIKQRL-----HTDLQVG 405

Query: 491 NRVFEFFM 498
           N + + ++
Sbjct: 406 NTLMDMYI 413



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 5/211 (2%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L+ C   K    LKQVH ++IR+G  L +  L   LI  I        ++ N+F  V+
Sbjct: 473 SILETCCGLKSISLLKQVHCYAIRNG--LLDLILENRLI-DIYGECGEFDHSLNLFQRVE 529

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             +I +W +MI     +     AV L+++M  + I+PD+     +L AI+ L+ +  G+Q
Sbjct: 530 KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQ 589

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   IR  F     V +SLV MY+  G +  A +VFE    +D+V W ++IN    +G 
Sbjct: 590 VHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGH 649

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACA 255
             +A+ LF+ M   G+ PD  + ++L  AC+
Sbjct: 650 GKQAIDLFKRMLQTGLTPDHVSFLALLYACS 680


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/522 (41%), Positives = 330/522 (63%), Gaps = 6/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  + + ++ +WN M+ GYA++     A+ L+ +M  +GI+PD  T+  ++ A S 
Sbjct: 213 ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSS 272

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D  +         +   +   FV+ +L+ MYA FG +  A K+F  M  R++V WNS+
Sbjct: 273 RGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSM 332

Query: 216 INGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I G+A NG+   A+ LF+EM  ++ + PD  TMVS+ SAC  LGAL LG     ++ +  
Sbjct: 333 IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ 392

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  +++ +NA++  YS+CG +  A+RVF+EM  R+ VS++TL+ G A +G G EA+ L  
Sbjct: 393 IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMS 452

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+ GG  P  VTF+GVL ACSH G+++EG   F+ +KD     P I+H+ CMVDLLGR 
Sbjct: 453 TMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRV 507

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G ++ A   ++ M M P+A ++ +LL A  IH    + E+A + L +LEP +SG+++LLS
Sbjct: 508 GELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLS 567

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   RW +V+ +R  M K  VKKT G S VE G ++ +F + DRSH ++++I+ +L 
Sbjct: 568 NIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLI 627

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+ KK++  GY+     V  D+EEEEKE+ +  HSEK+AI + L+ +  G  +RVVKNLR
Sbjct: 628 ELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLR 687

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH AIK+ISK+  R I+VRD +RFH F DG CSC+DYW
Sbjct: 688 VCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 204/453 (45%), Gaps = 75/453 (16%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+Q+HA  I + +  +N  +   LI     L  P  Y H +F+   +PN+F + +M+R Y
Sbjct: 17  LRQLHAQIIHNSLHHHNYWVA-LLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +   +    V +Y +M   G++PD   YP L+K+         G   H+  ++ G  S  
Sbjct: 76  SHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLGHGSDA 130

Query: 179 FVQNSLVHMYAAFGHVKDACKV---------------------------------FELMS 205
           FV+N+++ MYA  G +  A KV                                 F++M 
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 206 ERDLVAW-------------------------------NSVINGFASNGKPNEALTLFRE 234
           ER+++ W                               N++++G+A NG   EAL LF E
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 250

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M + G+EPD  T V++ SAC+  G   L       + +  +  N  V  ALLD Y+K G 
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGD 310

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLY 353
           + +A+++F  M  RN V+W++++ G A NG    A+ELFKEM       P EVT V V+ 
Sbjct: 311 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 370

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           AC H G ++ G ++  R   E  I   I     M+ +  R G ++ A    Q M    + 
Sbjct: 371 ACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM-ATRDV 428

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQ--LEP 444
           V + TL+     HGH   A    ST+ +  +EP
Sbjct: 429 VSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 461



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   ++ ++NT+I G+A   + + A+ L S M   GI+PD  T+  +L A
Sbjct: 413 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 472

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELM 204
            S    +  G        R  FES+    +     +V +    G ++DA +  E M
Sbjct: 473 CSHAGLLEEG--------RKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERM 520


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/582 (40%), Positives = 349/582 (59%), Gaps = 16/582 (2%)

Query: 46  ITLLQVCASSK-HKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIF 100
           I+ L  CAS K  KL +Q+H  S++ G+ LN       +  A+++L     Y      IF
Sbjct: 419 ISSLSSCASLKWAKLGQQIHGESLKLGIDLNVS-----VSNALMTLYAETGYLNECRKIF 473

Query: 101 SHVQDPNIFTWNTMIRGYAESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           S + + +  +WN++I   A S   L  AV  +     +G K +  T+  +L A+S L+  
Sbjct: 474 SSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFG 533

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVING 218
            +G+Q H +A++N        +N+L+  Y   G +    K+F  M+ER D V WNS+I+G
Sbjct: 534 ELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  N    +AL L   M   G   D +   ++ SA A +  L  G   H    +  L  +
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V +AL+D YSKCG +  A R F  M  RN+ SW++++ G A +G G+EAL+LF+ M++
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKL 713

Query: 339 GGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
            G  P + VTFVGVL ACSH G+++EGF +F+ M D YG+ P+IEHF CM D+LGRAG +
Sbjct: 714 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGEL 773

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACT-IHGHSA-IAEIARSTLLQLEPKHSGDYVLLSN 455
            +  ++I+ M M PN +IWRT+LGAC   +G  A + + A   L QLEP+++ +YVLL N
Sbjct: 774 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 833

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW ++ + R+ M    VKK  G+S V + + V  F  GD+SHP  + I+  L E
Sbjct: 834 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 893

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT-PVRVVKNLR 574
           + +K++  GYVP+T     D+E+E KE+ LSYHSEK+A+AF+L      T P+R++KNLR
Sbjct: 894 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 953

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH A K ISK+  R+I++RD +RFHHF+DG CSC D+W
Sbjct: 954 VCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 7/271 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA   F  ++  N  +WN++I  Y+++ +   A  ++S M   G +P  +T+  L+  
Sbjct: 156 VGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTT 215

Query: 153 ISKLA--DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
              L   DVR+ EQ      ++G  + +FV + LV  +A  G +  A KVF  M  R+ V
Sbjct: 216 ACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAV 275

Query: 211 AWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYT-MVSLFS--ACAELGALALGRRA 266
             N ++ G        EA  LF +M S   V P+ Y  ++S F   + AE   L  GR  
Sbjct: 276 TLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREV 335

Query: 267 HTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
           H +V   GL D  V + N L++ Y+KCG I  A+RVF  M  +++VSW++++ GL  NG 
Sbjct: 336 HGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGC 395

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
             EA+E +K M     +PG  T +  L +C+
Sbjct: 396 FIEAVERYKSMRRHDILPGSFTLISSLSSCA 426



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 143/269 (53%), Gaps = 9/269 (3%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+Q+     + G+ L +  +G  L+ A    S  +SYA  +F+ ++  N  T N ++ G 
Sbjct: 227 LEQIMCTIQKSGL-LTDLFVGSGLVSAFAK-SGSLSYARKVFNQMETRNAVTLNGLMVGL 284

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-----ISKLADVRMGEQTHSVAIRNG 173
                   A +L+  M+ S I     +Y  LL +     +++   ++ G + H   I  G
Sbjct: 285 VRQKWGEEATKLFMDMN-SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTG 343

Query: 174 F-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
             + +V + N LV+MYA  G + DA +VF  M+++D V+WNS+I G   NG   EA+  +
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERY 403

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           + M    + P  +T++S  S+CA L    LG++ H    K+G+  NV+V+NAL+  Y++ 
Sbjct: 404 KSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET 463

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           G +   +++F  M + + VSW++++  LA
Sbjct: 464 GYLNECRKIFSSMPEHDQVSWNSIIGALA 492



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 11/235 (4%)

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           HS   +N  +  V++ N+L++ Y   G    A KVF+ M  R+ V+W  +++G++ NG+ 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL--GRRAHTYVWKVGLSDNVNVNN 283
            EAL   R+M  EG+  + Y  VS+  AC E+G++ +  GR+ H  ++K+  + +  V+N
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143

Query: 284 ALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            L+  Y KC G +  A   F ++  +N+VSW++++   +  G  + A  +F  M+  G  
Sbjct: 144 VLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
           P E TF  ++   + C + +      ++      IM  I+  G + DL   +GLV
Sbjct: 204 PTEYTFGSLV--TTACSLTEPDVRLLEQ------IMCTIQKSGLLTDLFVGSGLV 250



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N  +W  ++ GY+ +     A+     M   GI  + + +  +L+A  +
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQE 114

Query: 156 LADVRM--GEQTHSVAIRNGFESLVFVQNSLVHMY-AAFGHVKDACKVFELMSERDLVAW 212
           +  V +  G Q H +  +  +     V N L+ MY    G V  A   F  +  ++ V+W
Sbjct: 115 IGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSW 174

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA--LALGRRAHTYV 270
           NS+I+ ++  G    A  +F  M  +G  P  YT  SL +    L    + L  +    +
Sbjct: 175 NSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTI 234

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K GL  ++ V + L+  ++K G +  A++VF +M  RNAV+ + L+VGL    +G+EA 
Sbjct: 235 QKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEAT 294

Query: 331 ELFKEM 336
           +LF +M
Sbjct: 295 KLFMDM 300



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 7/136 (5%)

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           +S   +C  +G     R  H+ ++K  L  +V + N L++ Y + G  ++A++VF EM  
Sbjct: 7   LSFVQSC--VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           RN VSW+ +V G + NG  KEAL   ++M   G    +  FV VL AC   G V  G  +
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV--GILF 122

Query: 368 FKRMKDEYGIMPKIEH 383
            +++   +G+M K+ +
Sbjct: 123 GRQI---HGLMFKLSY 135


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 322/557 (57%), Gaps = 5/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+HA   +H   LN+P +   L+         M  A N+F  +   N+ +WN+MI G+ 
Sbjct: 220 QQIHALIHKHCF-LNDPFVATALLDMYAKCG-SMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           +  N L    +     V  + PD  +   +L A + L ++  G+Q H   ++ G   LV+
Sbjct: 278 K--NKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVY 335

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V+NSLV MY   G  +DA K+F    +RD+V WN +I G        +A T F+ M  EG
Sbjct: 336 VKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG 395

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           VEPD  +  SLF A A + AL  G   H++V K G   N  ++++L+  Y KCG ++ A 
Sbjct: 396 VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAY 455

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           +VFRE ++ N V W+ ++     +G   EA++LF+EM   G VP  +TFV VL ACSH G
Sbjct: 456 QVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTG 515

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            +D+GF YF  M + + I P +EH+ CMVDLLGR G +++A  +I++M   P++++W  L
Sbjct: 516 KIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGAL 575

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +       L +LEP + G+Y+LLSN+Y          EVRR M    V+
Sbjct: 576 LGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVR 635

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K  G S +++ NR F F   DRSH +T+EI+ ML ++ + +K  GYV  T+     +E  
Sbjct: 636 KESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGS 695

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           E E +L  HSEK+A+AF L+   PG+PVR+ KNLR C DCH  +K  S+++ REI+VRD 
Sbjct: 696 E-EQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDI 754

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFH F +G CSC DYW
Sbjct: 755 NRFHRFTNGSCSCMDYW 771



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 165/330 (50%), Gaps = 5/330 (1%)

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
           N + H    N+ TW T+I   + S  P  A+  +++M  +GI P+  T+  +L A +  A
Sbjct: 156 NTYPH-PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAA 214

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            +  G+Q H++  ++ F +  FV  +L+ MYA  G +  A  VF+ M  R+LV+WNS+I 
Sbjct: 215 LLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIV 274

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           GF  N     A+ +FRE+ S G  PD  ++ S+ SACA L  L  G++ H  + K GL  
Sbjct: 275 GFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVG 332

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            V V N+L+D Y KCG+   A ++F     R+ V+W+ +++G       ++A   F+ M 
Sbjct: 333 LVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMI 392

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P E ++  + +A +    + +G +       + G +        +V + G+ G +
Sbjct: 393 REGVEPDEASYSSLFHASASIAALTQG-TMIHSHVLKTGHVKNSRISSSLVTMYGKCGSM 451

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             AY+  +      N V W  ++     HG
Sbjct: 452 LDAYQVFRET-KEHNVVCWTAMITVFHQHG 480



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 20/284 (7%)

Query: 149 LLKAISKLADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-- 205
           LL   +KL  ++   Q HS +   N   SL  + N+L+ +YA  G +     +F      
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANI-NTLLLLYAKCGSIHHTLLLFNTYPHP 161

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
             ++V W ++IN  + + KP +ALT F  M + G+ P+ +T  ++  ACA    L+ G++
Sbjct: 162 STNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQ 221

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  + K    ++  V  ALLD Y+KCG ++ A+ VF EM  RN VSW++++VG   N  
Sbjct: 222 IHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKL 281

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF------SYFKRMKDEYGIMP 379
              A+ +F+E+   G  P +V+   VL AC+  G+V+  F      S  KR     G++ 
Sbjct: 282 YGRAIGVFREVLSLG--PDQVSISSVLSACA--GLVELDFGKQVHGSIVKR-----GLVG 332

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
            +     +VD+  + GL + A +         + V W  ++  C
Sbjct: 333 LVYVKNSLVDMYCKCGLFEDATKLFCGG-GDRDVVTWNVMIMGC 375


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 327/523 (62%), Gaps = 5/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+   + + N+ +W  MI GY++S     A+EL+ +M  +G K +  T   +L +   
Sbjct: 95  ARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPV 154

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              ++  EQ HS+ ++  FES +FV +SL+ MY   G++++A KVF+++ ERD V+  ++
Sbjct: 155 HQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAI 214

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G  +EAL LFR++ S G++ +  T  +L ++ + L +L  G++ H  + +  L
Sbjct: 215 ISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKEL 274

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + + N+L+D YSKCG ++ ++RVF  M +R+A+SW+ +++G   +G G+E ++LF+ 
Sbjct: 275 PFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRT 334

Query: 336 M--EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           M  E+    P  VT + VL  CSH G+VDEG   F  +  E   +  I H+GC++DLLGR
Sbjct: 335 MTEEVK---PDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGR 391

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +G +++A + I++M   P   IW +LLGAC +H + ++ E+    LL +EP ++G+YV+L
Sbjct: 392 SGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVIL 451

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA    W +V  VR+ M++  V K P  S + L   +  F   +R HP+ ++I+A +
Sbjct: 452 SNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKI 511

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   +K  G+VP    V  D+++E+KE  L  HSEK+AI F L+NT PG  ++V+KNL
Sbjct: 512 KEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNL 571

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K +SKVY REI +RD++RFH  KDG C+C DYW
Sbjct: 572 RICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 155/320 (48%), Gaps = 15/320 (4%)

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
           S + V G     H Y   + A  +   +  G Q H+  ++  +   V++   L+ +Y   
Sbjct: 30  SSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRC 89

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G + DA  V + M ER++V+W ++I+G++ +G+  EAL LF  M   G + + +T+ ++ 
Sbjct: 90  GALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVL 149

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           ++C    ++    + H+ V K     ++ V ++LLD Y K G I  A++VF  + +R+ V
Sbjct: 150 TSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTV 209

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           S + ++ G A  G   EAL+LF+++   G     VTF  +L + S       G +     
Sbjct: 210 SCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLS-------GLASLNYG 262

Query: 372 KDEYGIMPKIE--HF----GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
           K  +G++ + E   F      ++D+  + G +  +     NM    +A+ W  +L     
Sbjct: 263 KQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNM-PQRSAISWNAMLMGYGR 321

Query: 426 HG-HSAIAEIARSTLLQLEP 444
           HG    + ++ R+   +++P
Sbjct: 322 HGIGQEVVQLFRTMTEEVKP 341



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 44/199 (22%)

Query: 60  KQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           KQVH   +R  +P    L N  +  Y      S    + Y+  +F ++   +  +WN M+
Sbjct: 263 KQVHGLILRKELPFFIVLQNSLIDMY------SKCGKLLYSRRVFDNMPQRSAISWNAML 316

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GY         V+L+  M    +KPD+ T   +L   S    V  G           F+
Sbjct: 317 MGYGRHGIGQEVVQLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDI--------FD 367

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
            +V  QN+++H+    GH                  +  VI+    +G+  +AL L   M
Sbjct: 368 LIVKEQNAVIHI----GH------------------YGCVIDLLGRSGQLQKALDLIEHM 405

Query: 236 ASEGVEPDGYTMVSLFSAC 254
                EP      SL  AC
Sbjct: 406 P---FEPTPAIWGSLLGAC 421


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 320/523 (61%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  + + N+ +W  MI  Y++      A+ L+ +M  SG +P+  T+  +L +   
Sbjct: 112 ARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIG 171

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            +   +G Q HS  I+  +E+ V+V +SL+ MYA  G + +A  +F+ + ERD+V+  ++
Sbjct: 172 SSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAI 231

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+A  G   EAL LFR +  EG++ +  T  S+ +A + L AL  G++ H ++ +  +
Sbjct: 232 ISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEV 291

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              V + N+L+D YSKCG +  A+R+F  + +R  +SW+ ++VG + +G G+E LELF  
Sbjct: 292 PSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNL 351

Query: 336 M-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGR 393
           M +     P  VT + VL  CSH G+ D+G   F  M   +  + P  +H+GC+VD+LGR
Sbjct: 352 MIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGR 411

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG V+ A+E+++ M   P+A IW  LLGAC++H +  I E     LLQ+EP+++G+YV+L
Sbjct: 412 AGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVIL 471

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SNLYA   RW +V+ +R  M+K+ V K PG S +EL   +  F   D SHP+ EE+ A +
Sbjct: 472 SNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKV 531

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E++ + K  GYVP    V  D++EE+KE  L  HSEK+A+ F L+ T    P+RV+KNL
Sbjct: 532 QELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNL 591

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+C DCH   K  SK+Y RE+ +RD++RFH    G CSC DYW
Sbjct: 592 RICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 130/231 (56%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G+  +   Y  +L    +   +R G++ H+  I+  +   V+++  L+  Y     
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           ++DA  VF++M ER++V+W ++I+ ++  G  ++AL+LF +M   G EP+ +T  ++ ++
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C       LGR+ H+++ K+    +V V ++LLD Y+K G I  A+ +F+ + +R+ VS 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + ++ G A  G  +EALELF+ ++  G     VT+  VL A S    +D G
Sbjct: 229 TAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG 279



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSL 89
           Q N +T      +T L   A+  H  KQVH   +R  VP    L N  +  Y      S 
Sbjct: 257 QSNYVTYT--SVLTALSGLAALDHG-KQVHNHLLRSEVPSYVVLQNSLIDMY------SK 307

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPF 148
              ++YA  IF  + +  + +WN M+ GY++       +EL++ M   + +KPD+ T   
Sbjct: 308 CGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLA 367

Query: 149 LLKAIS 154
           +L   S
Sbjct: 368 VLSGCS 373


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 329/560 (58%), Gaps = 16/560 (2%)

Query: 61  QVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           Q+H+ ++R G+  +     G   +YA  ++   M YA+ +F  +   ++ +W  +I GY 
Sbjct: 275 QLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYV 334

Query: 120 ESA---NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           +S    N ++A  L+ +M    IKP+  TY  +LK+ + ++D   G Q H+  I++   S
Sbjct: 335 QSGVQENKVMA--LFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQAS 392

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N+LV MYA  G +++A +VF  + ER ++   +    F           L   + 
Sbjct: 393 AHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDF----------PLDHRIV 442

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
              V     T  SL SA A +G L  G++ H    K G   +  V+N+L+  YS+CG + 
Sbjct: 443 RMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLE 502

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A R F E++ RN +SW++++ GLA +G+ + AL LF +M + G  P +VT++ VL ACS
Sbjct: 503 DACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACS 562

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V EG  YF+ M+ ++G++P++EH+ CMVDLL R+G+VK+A E+I  M +  +A++W
Sbjct: 563 HVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVW 622

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           +TLLGAC  H +  + EI    +++LEP+    YVLLSNLYA    W  V  +R  M   
Sbjct: 623 KTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDN 682

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ N   EF  GD SHP+ ++I+  L  + +++K  GYVP T  V  D+
Sbjct: 683 NLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDM 742

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            +E KE  L  HSEKIA+AF L+ T+   P+R+ KNLRVCADCH AIK +SK   REI++
Sbjct: 743 SDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIIL 802

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFH  KDG CSC +YW
Sbjct: 803 RDSNRFHRMKDGECSCGEYW 822



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 19/282 (6%)

Query: 96  AHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT--------Y 146
           A N+F  ++   +I +W  M    A +     ++ L  +M  SG+ P+ +T        +
Sbjct: 103 ARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACF 162

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           P  L  +     +      H + +   + + V V ++L+ M A  G +  A KVF+ + E
Sbjct: 163 PHELYCLVGGVVL---GLVHKMGL---WGTDVAVGSALIDMLARNGDLASARKVFDGLIE 216

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           + +V W  +I+ +       EA+ LF +   +G EPD YTM S+ SAC ELG++ LG + 
Sbjct: 217 KTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL 276

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIA---AQRVFREMRKRNAVSWSTLVVGLAVN 323
           H+   ++GL+ +  V+  L+D Y+K  I  A   A +VF  M K + +SW+ L+ G   +
Sbjct: 277 HSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQS 336

Query: 324 GFGK-EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G  + + + LF EM      P  +T+  +L +C+     D G
Sbjct: 337 GVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSG 378



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 157 ADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNS 214
            D+R+G   H   +R    +    V NSL+ +Y+  G V  A  VF+ M   RD+V+W +
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELGALALGRRAHTYVWK 272
           + +  A NG    +L L  EM   G+ P+ YT+ +   AC   EL    +G      V K
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHEL-YCLVGGVVLGLVHK 180

Query: 273 VGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           +GL   +V V +AL+D  ++ G + +A++VF  + ++  V W+ L+         +EA+E
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF +    GF P   T   ++ AC+  G V  G      +    G+         +VD+ 
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMY 299

Query: 392 GRAGLVKQAYEYIQNML--MPPNAVI-WRTLL 420
            ++  + QA +Y   +   MP N VI W  L+
Sbjct: 300 AKSN-IGQAMDYANKVFERMPKNDVISWTALI 330



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 5/176 (2%)

Query: 258 GALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRK-RNAVSWST 315
           G L LGR  H  + +  L D +  V N+LL  YS+CG + +A+ VF  MR  R+ VSW+ 
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           +   LA NG  + +L L  EM   G +P   T     +AC    +          +  + 
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 376 GIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           G+       G  ++D+L R G +  A +     L+    V+W TLL +  + G  A
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDG-LIEKTVVVW-TLLISRYVQGECA 235


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 353/599 (58%), Gaps = 12/599 (2%)

Query: 26  LYHSTPASQENP-------ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL 78
           LY+S  ASQ +P       + S+V   IT +  C+S  +  + +H   I+  V  N+  +
Sbjct: 19  LYNSF-ASQLSPTFHAFSNVDSLVSALITAISTCSSISY-CRALHCRVIK-SVNYNHGFI 75

Query: 79  GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS- 137
           G  L+ + V L      A  +F  + D ++ +WN++I G++  A+  + + L  +M    
Sbjct: 76  GDQLVSSYVELGCTKD-ALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEM 134

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+KP+  T   ++ A + + ++ +G+  H +A+++G    V V NSL+++Y   G ++ A
Sbjct: 135 GLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAA 194

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           C +FE MS + LV+WNS++      G   + +  F  M   G+  D  T+VSL  AC  L
Sbjct: 195 CCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENL 254

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           G   L    H Y+   GL  N+ +  ALLD Y+K G +  + +VF  M   +AV+W+ ++
Sbjct: 255 GVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAML 314

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
              A++G G+EA+E F+ M   G VP  VTF  +L ACSH G+V+EG +YFK M + YG+
Sbjct: 315 SSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGV 374

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
             ++EH+ CMVDLLGR+G +  AY+ I++M M PN+ +W  L+GAC + G+  + +    
Sbjct: 375 ELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAE 434

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L  L+P  S +Y+ LSN+Y+   +W +  +VR  M +  + + PG S +E GN++  F 
Sbjct: 435 RLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFV 494

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
           MGD+SHP TE+I+  L E+ +K +  G+  +TE V  D++EE KED ++ HSEK+AIAF 
Sbjct: 495 MGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFG 554

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+ T  G P+ + KN+R+C DCH   KLIS +  R I++RD  RFHHF +G CSC DYW
Sbjct: 555 LLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 330/560 (58%), Gaps = 16/560 (2%)

Query: 61  QVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           Q+H+ ++R G   +     G   +YA  ++   M YA+ +F  ++  ++ +W  +I GY 
Sbjct: 275 QLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYV 334

Query: 120 ESA---NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           +S    N ++   L+ +M    IKP+  TY  +LKA + ++D   G Q H+  I++   +
Sbjct: 335 QSGVQENKVMV--LFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAA 392

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N+LV MYA  G +++A +VF  + ER +++   +  G  +         L   + 
Sbjct: 393 AHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS--CITEGRDA--------PLDHRIG 442

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
              +     T  SL SA A +G L  G++ H    K G   +  V+N+L+  YS+CG + 
Sbjct: 443 RMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLE 502

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A R F E++ RN +SW++++ GLA +G+ + AL LF +M + G  P +VT++ VL ACS
Sbjct: 503 DACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACS 562

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V EG  YF+ M+ ++G++P++EH+ CMVDLL R+GLVK+A E+I  M +  +A++W
Sbjct: 563 HVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVW 622

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           +TLLGAC  H +  + EIA   +++LEP+    YVLLSNLYA    W  V  +R  M   
Sbjct: 623 KTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDN 682

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S +E+ N   EF  GD SHP+ ++I+  L  +  ++K  GYVP T  V  D+
Sbjct: 683 NLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDM 742

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            +E KE  L  HSEKIA+AF L+ T+   P+R+ KNLRVCADCH AIK +SK   REI++
Sbjct: 743 SDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIIL 802

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFH  KDG CSC +YW
Sbjct: 803 RDSNRFHRMKDGECSCGEYW 822



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 96  AHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-- 152
           A N+F  ++   +I +W  M    A +     ++ L  +M  SG+ P+ +T   +  A  
Sbjct: 103 ARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACF 162

Query: 153 ---ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
              +  L    +    H + +   + + + V ++L+ M A  G +  A KVF+ + E+ +
Sbjct: 163 PHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTV 219

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V W  +I+ +       EA+ +F +   +G EPD YTM S+ SAC ELG++ LG + H+ 
Sbjct: 220 VVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSL 279

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIA---AQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
             ++G + +  V+  L+D Y+K  I  A   A +VF  MRK + +SW+ L+ G   +G  
Sbjct: 280 ALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQ 339

Query: 327 K-EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + + + LF EM      P  +T+  +L AC++    D G
Sbjct: 340 ENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSG 378



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 11/272 (4%)

Query: 157 ADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNS 214
            D+R+G   H   +R    +    V NSL+ +Y+  G V  A  VF+ M   RD+V+W +
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC--AELGALALGRRAHTYVWK 272
           + +  A NG   E+L L  EM   G+ P+ YT+ ++  AC   EL    +G      V K
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHEL-YCLVGGVVLGLVHK 180

Query: 273 VGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           +GL   ++ V +AL+D  ++ G + +A++VF  + ++  V W+ L+         +EA+E
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F +    GF P   T   ++ AC+  G V  G      +    G          +VD+ 
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFASDACVSCGLVDMY 299

Query: 392 GRAGLVKQAYEYIQNML--MPPNAVI-WRTLL 420
            ++  ++QA +Y   +   M  N VI W  L+
Sbjct: 300 AKSN-IEQAMDYANKVFERMRKNDVISWTALI 330



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 258 GALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRK-RNAVSWST 315
           G L LGR  H  + +  L D +  V N+LL  YS+CG + +A+ VF  MR  R+ VSW+ 
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC----SHCGMVDEGFSYFKRM 371
           +   LA NG  +E+L L  EM   G +P   T   V +AC     +C +         +M
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
              +G    I     ++D+L R G +  A +     L+    V+W TLL +  + G  A
Sbjct: 182 G-LWGT--DIAVGSALIDMLARNGDLASARKVFDG-LIEKTVVVW-TLLISRYVQGECA 235


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/522 (42%), Positives = 316/522 (60%), Gaps = 12/522 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ TW+ +I GYA+      A++++ +M + G +P+  T   LL   +    +  G++TH
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 167 SVAIR-------NGFESLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVIN 217
             AI+       N     + V N+L+ MY+     K A  +F+L+   +R +V W  +I 
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 218 GFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           G A +G+ NEAL LF +M      V P+ +T+     ACA LGAL  GR+ H YV +   
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510

Query: 276 -SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            S  + V N L+D YSK G + AA+ VF  M +RN VSW++L+ G  ++G G+EAL++F 
Sbjct: 511 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 570

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM+  G VP  VTFV VLYACSH GMVD+G +YF  M  ++G++P  EH+ CMVDLL RA
Sbjct: 571 EMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 630

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A E I+ M M P   +W  LL AC ++ +  + E A + LL+LE  + G Y LLS
Sbjct: 631 GRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLS 690

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  + W +V  +R  M    +KK PG S V+       FF GD SHP +++I+ +L 
Sbjct: 691 NIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLR 750

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +++K  GYVP       D+++EEK D LS HSEK+A+A+ ++ TAPG P+R+ KNLR
Sbjct: 751 DLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLR 810

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH A   IS +   EI+VRD SRFHHFK+G CSCR YW
Sbjct: 811 ACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 225/474 (47%), Gaps = 75/474 (15%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           + + + ST +S  +  +++  +C +L           + +H   +  G+P ++P    ++
Sbjct: 17  LTTFFFSTASSTTDLTSTLFHQCKSLASA--------ELIHQQLLVQGLP-HDP---THI 64

Query: 83  IYAIVSLSFPMSYAHNIFS--HVQDPNIFTWNTMIR-----GYAESANPLLAVELYSKMH 135
           I   ++ + P + A ++    H     +F WN +IR     G+ E       ++LY +M 
Sbjct: 65  ISMYLTFNSP-AKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDV-----LQLYRRMQ 118

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
             G +PD +T+PF+LKA  ++   R G   H+V   +GFE  VFV N LV MY   G  +
Sbjct: 119 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 178

Query: 196 DACKVFELMSER---DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLF 251
           +A +VF+ M ER   DLV+WNS++  +   G    A+ +F  M  + G+ PD  ++V++ 
Sbjct: 179 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 238

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--- 308
            ACA +GA + G++ H Y  + GL ++V V NA++D Y+KCG++  A +VF  M+ +   
Sbjct: 239 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 298

Query: 309 --------------------------------NAVSWSTLVVGLAVNGFGKEALELFKEM 336
                                           N V+WS ++ G A  G G EAL++F++M
Sbjct: 299 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGF-SYFKRMK-----DEYGIMPKIEHFGCMVDL 390
            + G  P  VT V +L  C+  G +  G  ++   +K     DE      +     ++D+
Sbjct: 359 RLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 418

Query: 391 LGRAGLVKQAYEYIQNMLMPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
             +    K A       L+PP   + V W  L+G    HG +  A    S +LQ
Sbjct: 419 YSKCKSPKAARAMFD--LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 470



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 188/385 (48%), Gaps = 57/385 (14%)

Query: 96  AHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLK 151
           A  +F  +++    ++ +WN+++  Y +  + + A++++ +M    GI+PD  +   +L 
Sbjct: 180 ARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLP 239

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A + +     G+Q H  A+R+G    VFV N++V MYA  G +++A KVFE M  +D+V+
Sbjct: 240 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 299

Query: 212 WNS-----------------------------------VINGFASNGKPNEALTLFREMA 236
           WN+                                   VI G+A  G   EAL +FR+M 
Sbjct: 300 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYV--WKVGL-----SDNVNVNNALLDFY 289
             G EP+  T+VSL S CA  G L  G+  H +   W + L      D++ V NAL+D Y
Sbjct: 360 LCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMY 419

Query: 290 SKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFV-PGE 345
           SKC    AA+ +F  +  + R+ V+W+ L+ G A +G   EALELF +M +   FV P  
Sbjct: 420 SKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNA 479

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            T    L AC+  G +  G    +Y  R + E  ++       C++D+  ++G V  A  
Sbjct: 480 FTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAARV 536

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
              NM    N V W +L+    +HG
Sbjct: 537 VFDNM-HQRNGVSWTSLMTGYGMHG 560



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 21/331 (6%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYL--IYAIVSL----SFPMSYAH 97
           ++LL  CA +   L  K+ H  +I+  + L+  D G  L  I A++ +      P + A 
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA-AR 429

Query: 98  NIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAI 153
            +F  +  +D ++ TW  +I G A+      A+EL+S+M      + P+  T    L A 
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 489

Query: 154 SKLADVRMGEQTHSVAIRNGFES-LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++L  +R G Q H+  +RN FES ++FV N L+ MY+  G V  A  VF+ M +R+ V+W
Sbjct: 490 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSW 549

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S++ G+  +G+  EAL +F EM   G+ PDG T V +  AC+  G +  G      + K
Sbjct: 550 TSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNK 609

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGK 327
             G+         ++D  S+ G +  A  + R M  K     W  L+    V      G+
Sbjct: 610 DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGE 669

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            A     E+E G    G  T +  +YA + C
Sbjct: 670 YAANQLLELESGN--DGSYTLLSNIYANARC 698


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/560 (39%), Positives = 329/560 (58%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNP-DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +Q+H+  +R G+  +     G   +Y  + +   M  A  +F  +   N+ +W  +I GY
Sbjct: 269 QQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGY 328

Query: 119 AE-SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +       AVEL  +M    I+P+  TY  LLKA + L+D   G Q H+  ++    ++
Sbjct: 329 VQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNV 388

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             V N+LV MYA  G +++A K F+ + ER+L++ +S I      G+ N + +   E   
Sbjct: 389 NVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDI---GETGRSNASWSSQIESMD 445

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            GV    +T  SL SA A +G    G++ H    K G   +  ++N+L+  YS+CG +  
Sbjct: 446 VGVST--FTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDD 503

Query: 298 AQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           A R F EM    N +SW++++  LA +G  + AL LF +M + G  P +VT++ VL ACS
Sbjct: 504 ACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACS 563

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+V EG  YF+ M+ ++ ++P++EH+ CMVDLL R+GLV++A E+I  M    +A++W
Sbjct: 564 HVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVW 623

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           +TLLGAC  + +  I EIA   ++ LEP+    YVLLSNLYA+   W  V  +R  M   
Sbjct: 624 KTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHR 683

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K  G S + +GN + EF  GD SHP+ +EI+A LA + +++K  GYVP T  V  D+
Sbjct: 684 NLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDM 743

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            ++ KE  L  HSEKIA+AF L+ T P  P+R+ KNLRVCADCH AIK ISK   REI++
Sbjct: 744 SDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIIL 803

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFH  KDG CSC +YW
Sbjct: 804 RDSNRFHRMKDGKCSCGEYW 823



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 200/443 (45%), Gaps = 22/443 (4%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM-GEQT 165
           ++ +W  M      +     A+ L  +M  SG++P+  T      A       R  G   
Sbjct: 110 DLVSWTAMAFCLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTV 169

Query: 166 HSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
              AI+ GF  + V V  +L+ M+A  G +  A KVF  + ER +V W  +I  +   G 
Sbjct: 170 LGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGC 229

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             +A+ LF  M  +G EPDGYTM S+ SACAE G+  LG++ H+ V ++GL  +  V+  
Sbjct: 230 AGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCG 289

Query: 285 LLDFYSKCGI---IIAAQRVFREMRKRNAVSWSTLVVG-LAVNGFGKEALELFKEMEIGG 340
           L+D Y+K  +   +  A++VF+ M   N +SW+ L+ G +   G    A+EL  EM    
Sbjct: 290 LVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNES 349

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
             P  +T+  +L AC++    D G     R MK   G +  + +   +V +   +G +++
Sbjct: 350 IEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGN--ALVSMYAESGCMEE 407

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A +    +         R LL   +  G +  +  + S+ ++        +   S L A 
Sbjct: 408 ARKAFDQLYE-------RNLLSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAA 460

Query: 460 EQRWLNV--QEVRRTMVKERVKKTPG--HSLVELGNRVFEFFMGDRSHPQTEEIHAMLA- 514
               L    Q++    +K   +   G  +SLV + +R        R+  + E+ H +++ 
Sbjct: 461 ATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISW 520

Query: 515 -EITKKLKLEGYVPRTENVFADI 536
             I   L   G+  R  ++F D+
Sbjct: 521 TSIISALAKHGHAERALSLFHDM 543



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTLF 232
            ++   V NSL+ MY+  GHV+ A +VF+ M   RDLV+W ++      NG   EAL L 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 233 REMASEGVEPDGYTMVSLFSAC--AEL----GALALGRRAHTYVWKVGLSDNVNVNNALL 286
            EM   G+ P+ +T+ +   AC   EL    G   LG    T  W      +V+V  AL+
Sbjct: 135 GEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGT----DVSVGCALI 190

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D +++ G ++AA++VF  + +R  V W+ ++      G   +A+ELF  M   GF P   
Sbjct: 191 DMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGY 250

Query: 347 TFVGVLYACSHCGMVDEG 364
           T   ++ AC+  G    G
Sbjct: 251 TMSSMVSACAEQGSAGLG 268


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/635 (35%), Positives = 361/635 (56%), Gaps = 42/635 (6%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASS--KHKLKQVHAFSIRHGVPLNNP 76
           LP     LY S  A    P  SV    +T+ + C +S    ++K+VH  +IR G+ +++ 
Sbjct: 112 LPNEAIRLYASLRARGIKPHNSVF---LTVAKACGASGDASRVKEVHDDAIRCGM-MSDA 167

Query: 77  DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136
            LG  LI+A       +  A  +F  +   ++ +W +M   Y     P L + ++ +M  
Sbjct: 168 FLGNALIHAYGKCKC-VEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGW 226

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
           +G+KP++ T   +L A S+L D++ G   H  A+R+G    VFV ++LV +YA    VK 
Sbjct: 227 NGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQ 286

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--------------- 241
           A  VF+LM  RD+V+WN V+  + +N + ++ L LF +M+S+GVE               
Sbjct: 287 ARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCME 346

Query: 242 --------------------PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                               P+  T+ S   AC+ L +L +G+  H YV++  L  ++  
Sbjct: 347 NGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTT 406

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             AL+  Y+KCG +  ++ VF  + +++ V+W+T+++  A++G G+E L LF+ M   G 
Sbjct: 407 MTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGI 466

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  VTF GVL  CSH  +V+EG   F  M  ++ + P   H+ CMVD+  RAG + +AY
Sbjct: 467 KPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAY 526

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E+IQ M M P A  W  LLGAC ++ +  +A+I+ + L ++EP + G+YV L N+    +
Sbjct: 527 EFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAK 586

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W    E R  M +  + KTPG S +++G+RV  F +GD+++ ++++I+  L E+ +K+K
Sbjct: 587 LWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMK 646

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GY P T+ V  DI++EEK ++L  HSEK+A+AF ++N    + +RV KNLR+C DCH 
Sbjct: 647 SAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHN 706

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           AIK +SKV    I+VRD  RFHHF++G+CSC+D W
Sbjct: 707 AIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 158/315 (50%), Gaps = 2/315 (0%)

Query: 60  KQVHAFSIRHGVPLNNPD-LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           KQ+ +  +   VP N P  LG  L+ A +++      A  +F ++  P+  T +T+I  +
Sbjct: 49  KQLTSTKVAPSVPTNIPSHLGLRLLKAALNVG-DFRRAQQLFDNIPQPDPTTCSTLISAF 107

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
                P  A+ LY+ +   GIKP    +  + KA     D    ++ H  AIR G  S  
Sbjct: 108 TTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDA 167

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F+ N+L+H Y     V+ A +VF+ +  +D+V+W S+ + + + G P   L +F EM   
Sbjct: 168 FLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWN 227

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+P+  T+ S+  AC+EL  L  GR  H +  + G+ +NV V +AL+  Y++C  +  A
Sbjct: 228 GVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQA 287

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF  M  R+ VSW+ ++     N    + L LF +M   G    E T+  V+  C   
Sbjct: 288 RLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMEN 347

Query: 359 GMVDEGFSYFKRMKD 373
           G  ++     ++M++
Sbjct: 348 GQTEKAVEMLRKMQN 362


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 314/525 (59%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A   F  +   +   W +MI G+ ++ +   A+  Y KM    +  D H     L A
Sbjct: 227 LSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSA 286

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVA 211
            S L     G+  H+  ++ GFE   F+ N+L  MY+  G +  A  VF++ S+   +V+
Sbjct: 287 CSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVS 346

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
             ++I+G+    +  +AL+ F ++   G+EP+ +T  SL  ACA    L  G + H  V 
Sbjct: 347 LTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVV 406

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K     +  V++ L+D Y KCG+   + ++F E+   + ++W+TLV   + +G G+ A+E
Sbjct: 407 KFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIE 466

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F  M   G  P  VTFV +L  CSH GMV++G +YF  M+  YG++PK EH+ C++DLL
Sbjct: 467 TFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLL 526

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG +K+A ++I NM   PN   W + LGAC IHG    A+ A   L++LEP++SG +V
Sbjct: 527 GRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHV 586

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+YA E++W +VQ +R+ +    + K PG+S V++ N+   F + D SHPQ +EI+ 
Sbjct: 587 LLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYE 646

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L  +  ++K  GYVP+TE+V  D+++  KE  L YHSE+IA+AF L+    G P+ V K
Sbjct: 647 KLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKK 706

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC+DCH A+K ISKV  R I+VRD SRFHHF +G CSC DYW
Sbjct: 707 NLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 197/387 (50%), Gaps = 15/387 (3%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           L+Q  A +K  +K KQ+HA  IR G  L N  L  + +  + S    + Y   +F  +  
Sbjct: 81  LIQTYARTKELNKGKQLHAMLIRGGC-LPNTFLSNHFL-NLYSKCGELDYTIKLFDKMSQ 138

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+ +W ++I G+A ++    A+  + +M + G          +L+A + L  ++ G Q 
Sbjct: 139 RNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQV 198

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H + ++ GF   +FV ++L  MY+  G + DACK FE M  +D V W S+I+GF  NG  
Sbjct: 199 HCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDF 258

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            +ALT + +M ++ V  D + + S  SAC+ L A + G+  H  + K+G      + NAL
Sbjct: 259 KKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNAL 318

Query: 286 LDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
            D YSK G +++A  VF+      + VS + ++ G       ++AL  F ++   G  P 
Sbjct: 319 TDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPN 378

Query: 345 EVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK---QA 400
           E TF  ++ AC++   ++ G   + + +K  +   P +     +VD+ G+ GL     Q 
Sbjct: 379 EFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLFDHSIQL 436

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHG 427
           ++ I+N    P+ + W TL+G  + HG
Sbjct: 437 FDEIEN----PDEIAWNTLVGVFSQHG 459



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 1/238 (0%)

Query: 120 ESANPLLAVELYSKMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           E    +++      +  SG K  DT T   L++  ++  ++  G+Q H++ IR G     
Sbjct: 51  EGVEEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNT 110

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F+ N  +++Y+  G +    K+F+ MS+R++V+W S+I GFA N +  EAL+ F +M  E
Sbjct: 111 FLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIE 170

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G     + + S+  AC  LGA+  G + H  V K G    + V + L D YSKCG +  A
Sbjct: 171 GEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDA 230

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            + F EM  ++AV W++++ G   NG  K+AL  + +M        +      L ACS
Sbjct: 231 CKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/564 (38%), Positives = 340/564 (60%), Gaps = 10/564 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+H  ++R G+  ++      L++       P+  A   F  +  PN      M  G  
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLD-ARRAFDEIPTPNPVIVTAMASGCM 166

Query: 120 ESANPLLAVELYSKMHVSGIKP--DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
            +      + ++  M  SG     D       L A +++ D  +    H++  + G +  
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 178 VFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             V N+++  YA  G   +  A K+F++M +RD+V+WN++I  +A NG   EAL L+ +M
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 236 ASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
              G  V  +  T+ ++  ACA  GA+  G+R H  V ++GL DNV V  +++D YSKCG
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCG 345

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A + F++++ +N +SWS ++ G  ++G+G+EAL +F +M   G  P  +TF+ VL 
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLA 405

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           ACSH G++ EG  ++  MK E+GI P +EH+GCMVDLLGRAG + +AY  I+ M + P+A
Sbjct: 406 ACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 465

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            +W  LL AC I+ +  +A+I    L +L+  +SG YVLLSN+YA    W  V+ +R  +
Sbjct: 466 ALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMR-VL 524

Query: 474 VKER-VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           VK R ++K PG+S VEL  +   F++GD+SHPQ +EI+A L ++ +++   GYVP T +V
Sbjct: 525 VKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSV 584

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             D++ EE+E  L  HSEK+A+AF L+N+  G+ + V+KNLRVC DCH AIK+I+K+  R
Sbjct: 585 LHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGR 644

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EI++RD  RFHHFKDG CSC DYW
Sbjct: 645 EIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 16/278 (5%)

Query: 162 GEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           G Q H +A+R+G F S  +  ++L+HMY       DA + F+ +   + V   ++ +G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 221 SNGKPNEALTLFREMASEGVEP--DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            N      L++FR M + G     D    +   SA A +    +    H  V K+GL   
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 279 VNVNNALLDFYSKCG--IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
             V N ++D Y+K G   + AA+++F +M  R+ VSW+T++   A NG   EAL L+ +M
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLF-DMMDRDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 337 EI-GGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE---YGIMPKIEHFGCMVDLL 391
            I GG V    VT   VL AC+H G +  G    KR+ ++    G+   +     +VD+ 
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTG----KRIHNQVVRMGLEDNVYVGTSVVDMY 341

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            + G V+ A++  Q  +   N + W  ++    +HG+ 
Sbjct: 342 SKCGKVEMAWKAFQK-IKGKNILSWSAMIAGYGMHGYG 378


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 344/557 (61%), Gaps = 4/557 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           +VHA++I+HG+  +N  +G  LI  +      + Y  + F ++ + ++ +W T+I GYA+
Sbjct: 373 EVHAYAIKHGID-SNMHIGNSLI-DMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +   L A+ L  K+ +  +  D      +L A S L   ++ ++ H   ++ G    + +
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLAD-ILI 489

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
           QN++V++Y     V  A  VFE ++ +D+V+W S+I     NG   EAL LF  +    +
Sbjct: 490 QNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNI 549

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           EPD  T+VS+  A A L +L  G+  H ++ + G      + N+L+D Y++CG +  A+ 
Sbjct: 550 EPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARN 609

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F  +++R+ + W++++    ++G GK+A++LF +M     +P  +TF+ +LYACSH G+
Sbjct: 610 IFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGL 669

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V EG  +F+ MK+EY + P  EH+ C+VDLL R+  +++AY +++NM + P+A +W  LL
Sbjct: 670 VVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALL 729

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           GAC IH ++ + E+A   LLQL  ++SG+YVL+SN +A + RW +V+EVR  M   ++KK
Sbjct: 730 GACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKK 789

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIEEE 539
            PG S +E+ N++  F   D+SHPQ   I+  LA+ TK LK + GY  +T+ VF D+ EE
Sbjct: 790 KPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEE 849

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           EK   L  HSE++A+ + L+ T+ GT +R+ KNLR+C DCH   K+ S++  R +VVRD 
Sbjct: 850 EKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDA 909

Query: 600 SRFHHFKDGHCSCRDYW 616
           SRFHHF+ G CSC D+W
Sbjct: 910 SRFHHFERGLCSCGDFW 926



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 208/416 (50%), Gaps = 20/416 (4%)

Query: 20  PCRVKSLYHSTPASQENPITSVVRKCIT-----LLQVCASSKH--KLKQVHAFSIRHGVP 72
           P  +K  + S      +P+ +  R  +       L++CAS K   + +Q+HA  ++    
Sbjct: 19  PISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNY 78

Query: 73  LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYS 132
           L++  L    ++ +         A  +F  + +  IFTWN MI     +   + A+ELY 
Sbjct: 79  LDSVFLDTKFVH-MYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYK 137

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           +M V G+  D  T+P +LKA     + R+G + H VA++ G+   VFV N+L+ MYA  G
Sbjct: 138 EMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCG 197

Query: 193 HVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            +  A  +F+  LM + D V+WNS+I+     G+  EAL+LFR M   GVE + YT VS 
Sbjct: 198 DLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSA 257

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
             AC     + +GR  H  + K     +V V+NAL+  Y+ CG +  A+RVF+ M  ++ 
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW+TL+ G+  N    +A+  F++M+  G  P +V+ + ++ A      +  G      
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME-VHA 376

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVK---QAYEYIQNMLMPPNAVI-WRTLLGA 422
              ++GI   +     ++D+ G+   VK    A+EY     MP   +I W T++  
Sbjct: 377 YAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEY-----MPEKDLISWTTIIAG 427



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 191/383 (49%), Gaps = 20/383 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +  +WNT++ G  ++     A+  +  M  SG KPD  +   ++ A
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
             + A++  G + H+ AI++G +S + + NSL+ MY     VK     FE M E+DL++W
Sbjct: 362 SGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISW 421

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G+A N    +AL L R++  E ++ D   + S+  AC+ L +  L +  H YV K
Sbjct: 422 TTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK 481

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            GL+D + + NA+++ Y +  ++  A+ VF  +  ++ VSW++++     NG   EALEL
Sbjct: 482 GGLAD-ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALEL 540

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF------GC 386
           F  +      P  +T V VLYA +         S  K+ K+ +G + +   F        
Sbjct: 541 FNSLIETNIEPDLITLVSVLYAAA-------ALSSLKKGKEIHGFLIRKGFFLEGLIANS 593

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
           +VD+  R G ++ A   I N +   + ++W +++ A  +H  G  AI   ++ T   + P
Sbjct: 594 LVDMYARCGTMENARN-IFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLP 652

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQ 467
            H      L+ LYA     L V+
Sbjct: 653 DH---ITFLALLYACSHSGLVVE 672



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 185/362 (51%), Gaps = 20/362 (5%)

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            DP   +WN++I  +      L A+ L+ +M   G++ +T+T+   L+A      +++G 
Sbjct: 214 DDP--VSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H+V +++   + V+V N+L+ MYA  G ++DA +VF+ M  +D V+WN++++G   N 
Sbjct: 272 GIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQND 331

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             ++A+  F++M   G +PD  +++++ +A      L  G   H Y  K G+  N+++ N
Sbjct: 332 MYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGN 391

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+D Y KC  +      F  M +++ +SW+T++ G A N    +AL L +++++     
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV 451

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVK 398
             +    +L ACS       G    K +K+ +G + K     I     +V++ G   LV 
Sbjct: 452 DPMMIGSILLACS-------GLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVD 504

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNL 456
            A    ++ +   + V W +++  C  +G +  A    ++L++  +EP       L+S L
Sbjct: 505 YARHVFES-INSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDL---ITLVSVL 560

Query: 457 YA 458
           YA
Sbjct: 561 YA 562


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 326/518 (62%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +++ +  +W +MI G+ ++     A++++ +M +  ++ D +T+  +L A   +  
Sbjct: 231 LFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMA 290

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           ++ G+Q H+  IR  ++  +FV ++LV MY    ++K A  VF+ M+ +++V+W +++ G
Sbjct: 291 LQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  NG   EA+  F +M   G+EPD +T+ S+ S+CA L +L  G + H      GL   
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF 410

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V+NAL+  Y KCG I  + R+F E+  ++ V+W+ LV G A  G   E + LF+ M  
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLA 470

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P +VTF+GVL ACS  G+V++G   F+ M +E+GI+P  +H+ CM+DL  RAG ++
Sbjct: 471 HGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIE 530

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A  +I  M   P+A+ W TLL +C  +G+  I + A   L++L+P ++  YVLLS++YA
Sbjct: 531 EARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYA 590

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
            + +W  V  +R+ M  + ++K PG S ++  N+V  F   D+S+P +++I++ L ++  
Sbjct: 591 AKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNY 650

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+  EGYVP   +V  D+ + EK   L++HSEK+AIAF L+   PG P+RVVKNLRVC+D
Sbjct: 651 KMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSD 710

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH A K ISK+ +REI+VRD +RFH FKDG CSC D+W
Sbjct: 711 CHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 208/441 (47%), Gaps = 70/441 (15%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LL++C  + +  K K +H+  I+  +P     L   LI +   L   + YA  +F  +  
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKT-LPYPETFLLNNLISSYAKLG-SIPYACKVFDQMPH 72

Query: 106 PNIFTWNTMIRGYAE--------------------SANPLLA-----------VELYSKM 134
           PN+++WNT++  Y++                    S N L++           V+ Y+ M
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132

Query: 135 --HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
             +      +  T+  LL   SK   V++G Q H   ++ GF S VFV + LV MY+  G
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMG 192

Query: 193 HVKDACKVFEL-------------------------------MSERDLVAWNSVINGFAS 221
            +  A KVF+                                M ERD ++W S+I GF  
Sbjct: 193 MISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ 252

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG   +A+ +FREM  E ++ D YT  S+ +AC  + AL  G++ H Y+ +    DN+ V
Sbjct: 253 NGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFV 312

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            +AL+D Y KC  I +A+ VF++M  +N VSW+ ++VG   NG+ +EA++ F +M+  G 
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI 372

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P + T   V+ +C++   ++EG  +  R     G++  I     +V L G+ G ++ ++
Sbjct: 373 EPDDFTLGSVISSCANLASLEEGAQFHARALTS-GLISFITVSNALVTLYGKCGSIEDSH 431

Query: 402 EYIQNMLMPPNAVIWRTLLGA 422
               N +   + V W  L+  
Sbjct: 432 RLF-NEISFKDEVTWTALVSG 451



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           KQVHA+ IR     N      ++  A+V +      +  A  +F  +   N+ +W  M+ 
Sbjct: 295 KQVHAYIIRTDYKDN-----IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLV 349

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY ++     AV+ +S M   GI+PD  T   ++ + + LA +  G Q H+ A+ +G  S
Sbjct: 350 GYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLIS 409

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + V N+LV +Y   G ++D+ ++F  +S +D V W ++++G+A  GK NE + LF  M 
Sbjct: 410 FITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESML 469

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           + G++PD  T + + SAC+  G +  G +   + + + G+    +    ++D +S+ G I
Sbjct: 470 AHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRI 529

Query: 296 IAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
             A+    +M    +A+SW+TL+      G    GK A E   E++
Sbjct: 530 EEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 154/365 (42%), Gaps = 75/365 (20%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  LLK   +  +    +  HS  I+       F+ N+L+  YA  G +  ACKVF+ M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPD----GY--------------- 245
             +L +WN++++ ++  G+ +E   LF  M   +GV  +    GY               
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 246 -------------TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
                        T  +L    ++ G + LGR+ H +V K G    V V + L+D YSK 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 293 GIIIAAQRVFR-------------------------------EMRKRNAVSWSTLVVGLA 321
           G+I  A++VF                                EMR+R+++SW++++ G  
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIM 378
            NG  ++A+++F+EM++      + TF  VL AC     + EG    +Y  R   +  I 
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIF 311

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438
                   +VD+  +   +K A E +   +   N V W  +L     +G +  +E A  T
Sbjct: 312 VA----SALVDMYCKCKNIKSA-EAVFKKMTCKNVVSWTAMLVG---YGQNGYSEEAVKT 363

Query: 439 LLQLE 443
              ++
Sbjct: 364 FSDMQ 368


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/581 (40%), Positives = 347/581 (59%), Gaps = 16/581 (2%)

Query: 46   ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
            I+ L  CAS +     +QVH  +++ G+     DL   +  A+V +       S +  IF
Sbjct: 480  ISGLSSCASLRLLTAGQQVHCDAVKWGL-----DLDTSVSNALVKMYGDCGARSESWEIF 534

Query: 101  SHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
            + + + +I +WN+++     S  P   +VE++S M  SG+ P+  T+  LL A+S L+ +
Sbjct: 535  NSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVL 594

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVING 218
             +G+Q H+V +++G      V N+L+  YA  G +    ++F  MS  RD V+WNS+I+G
Sbjct: 595  ELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISG 654

Query: 219  FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            +  NG   E +     M       D  T   + +ACA + AL  G   H +  +  L  +
Sbjct: 655  YIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESD 714

Query: 279  VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            V V +ALLD YSKCG I  A +VF  M ++N  SW++++ G A +G G++ALE+F+EM+ 
Sbjct: 715  VVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQR 774

Query: 339  GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             G  P  VTFV VL ACSH G+VD G  YF+ M+D +GI+P IEH+ C++DLLGRAG + 
Sbjct: 775  NGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEHYSCVIDLLGRAGKLL 833

Query: 399  QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST---LLQLEPKHSGDYVLLSN 455
            +  EYI  M M PN +IWRT+L AC         ++ +     LL+LEP++  +YVL SN
Sbjct: 834  KIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASN 893

Query: 456  LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
             YA   RW +  + R  M    +KK  G S V LG+ V  F  GDRSHP T+EI+  L  
Sbjct: 894  FYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNF 953

Query: 516  ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
            + +K+K  GYVP TE    D+EEE KE+ LSYHSEK+A+AF+L  ++   P+R++KNLRV
Sbjct: 954  LIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKNLRV 1013

Query: 576  CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH A + IS++  R+I++RD  RFHHF+DG CSC DYW
Sbjct: 1014 CGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 192/413 (46%), Gaps = 16/413 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDL--GKYL 82
           ++ H   A +  P        IT   + + S   L QV A  ++ G   ++ DL  G  L
Sbjct: 255 AMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSG---SSSDLYVGSAL 311

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           + A       +  A +IF ++++ N  T N +I G  +      AV ++     S +  +
Sbjct: 312 VSAFARHGM-LDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVV-N 369

Query: 143 THTYPFLLKAISKLA----DVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDA 197
           T T+  LL A+++ +     +  G + H   +R G   L + + N LV+MYA  G +  A
Sbjct: 370 TDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKA 429

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            +VF L+  RD V+WN++I+    NG    A+  +  M    + P  +  +S  S+CA L
Sbjct: 430 SRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASL 489

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
             L  G++ H    K GL  + +V+NAL+  Y  CG    +  +F  M + + VSW++ +
Sbjct: 490 RLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNS-I 548

Query: 318 VGLAVNGFG--KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           +G+ V+      E++E+F  M   G  P +VTFV +L A S   +++ G      +  ++
Sbjct: 549 MGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELG-KQVHAVVLKH 607

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           G +        ++    ++G +    +   +M    +AV W +++     +GH
Sbjct: 608 GAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGH 660



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 22/295 (7%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P  H +  LL  + +  +    E+ H   ++ G    +F+ N LV++YA    +  A +V
Sbjct: 56  PPVHPHAGLL--LPRRGEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQV 113

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE---PDGYTMVSLFSACAEL 257
           F+ M ER+ V+W  +++G+  +G  +EA  +F+ M  EG E   P  +T  S+  AC + 
Sbjct: 114 FDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDA 173

Query: 258 GA--LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC--GIIIAAQRVFREMRKRNAVSW 313
           G   LA   + H  V K   + N  V NAL+  Y  C  G+ + AQ+VF     R+ ++W
Sbjct: 174 GPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITW 233

Query: 314 STLVVGLAVNGFGKEALELFKEM----EIGGFVPGEVTFVGVLYACS----HCGMVDEGF 365
           + L+   A  G+      LF  M          P E TF  ++ A S      G++D+ F
Sbjct: 234 NALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVF 293

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +   +     G    +     +V    R G++ +A +   N L   NAV    L+
Sbjct: 294 ARVLK----SGSSSDLYVGSALVSAFARHGMLDEAKDIFIN-LKERNAVTLNGLI 343



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 163/355 (45%), Gaps = 26/355 (7%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG---IKPDTHTYPFL 149
           ++ A  +F  + + N  +W  ++ GY  S     A  ++  M   G    +P   T+  +
Sbjct: 107 LAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSV 166

Query: 150 LKAISKLAD--VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMS 205
           L+A        +    Q H +  +  + S   V N+L+ MY   + G    A +VF+   
Sbjct: 167 LRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTP 226

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEG----VEPDGYTMVSLFSACAELGALA 261
            RDL+ WN++++ +A  G      TLF  M  +     + P+ +T  SL +A   L + +
Sbjct: 227 VRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITA-TSLSSCS 285

Query: 262 LGRRAHTY--VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
            G     +  V K G S ++ V +AL+  +++ G++  A+ +F  +++RNAV+ + L+VG
Sbjct: 286 SGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVG 345

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG--- 376
           L      +EA+ +F       FV    TFV +L A +   + ++G     R ++ +G   
Sbjct: 346 LVKQHCSEEAVGIFMGTR-DSFVVNTDTFVVLLSAVAEFSIPEDG---LMRGREVHGHIL 401

Query: 377 ----IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
               I  KI     +V++  + G + +A    + +L   + V W T++     +G
Sbjct: 402 RTGLIDLKIALSNGLVNMYAKCGAIDKASRVFR-LLCARDRVSWNTIISVLDQNG 455


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/521 (42%), Positives = 315/521 (60%), Gaps = 15/521 (2%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAISKLADVRMGE 163
           P     N  +RG A S +P  ++ L +   +  +  +PD  +  F LKA ++ +D     
Sbjct: 74  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTV 133

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H++ +R G  + V +  +L+  YA  G +  A KVF+ M+ RD+  WNS++ G A   
Sbjct: 134 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 193

Query: 224 KPNEALTLFREMASE------GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           +PN AL LF  +A+         EP+  T+V++ SACA++G L  G   H +  K GL  
Sbjct: 194 EPNLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDR 253

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           NV V N+L+D YSKCG +  A  VF  ++   R  VS++  +   +++G G +AL LF E
Sbjct: 254 NVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDE 313

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  VT++ VL  C+H G+VD+G   F  M+    + P ++H+G +VDLLGRAG
Sbjct: 314 MPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAG 368

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +AY+ + +M  P + V+W+TLLGA  +HG   +AE+A + L +L     GDYVLLSN
Sbjct: 369 RLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSN 428

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA + RW++V  VR TM    V+K PG S  E+   + +F  GD+ HP+ +EI+  L +
Sbjct: 429 VYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALED 488

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I  ++   GY P T NV  DI EEEK+ AL YHSEK+AIAF L+ T PG  +RV+KNLR+
Sbjct: 489 IVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRI 548

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  KLISK Y R IV+RDR+RFH F+DG CSCRDYW
Sbjct: 549 CGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 346/620 (55%), Gaps = 53/620 (8%)

Query: 37  PITSVVRKC-ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
           P +S   KC I+ L + A+ ++ L+ + A       P   P L    ++  ++    +  
Sbjct: 36  PPSSPPFKCSISPLTISATLQNLLQPLSA-------PGPPPILSYAPVFQFLTGLNMLKL 88

Query: 96  AHNIFSHVQ----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            H + +H+      P     + M+  YA S +   +V +++ +       D  T+PF+LK
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIG------DYFTFPFVLK 142

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD--- 208
           +  +L  V MG+  H + +R G +  ++V  SL+ +Y   G + DA KVF+ M+ RD   
Sbjct: 143 SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 202

Query: 209 ----------------------------LVAWNSVINGFASNGKPNEALTLFREMASE-- 238
                                       +V+W ++I+G++ +G   +AL+LF EM  E  
Sbjct: 203 WNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 262

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV P+  T++S+  ACA+L  L  GR+ H    ++GL+ N +V  AL   Y+KCG ++ A
Sbjct: 263 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 322

Query: 299 QRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           +  F ++ +  +N ++W+T++   A  G G +A+  F+EM   G  P ++TF G+L  CS
Sbjct: 323 RNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCS 382

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+VD G  YF  M   Y I P++EH+ C+ DLLGRAG + +A + +  M MP    IW
Sbjct: 383 HSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIW 442

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
            +LL AC  H +  +AE A   L  LEP+++G+YVLLSN+YA   RW  V ++R  +  +
Sbjct: 443 GSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQ 502

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
             KK+PG S +E+  +   F  GD SHPQ +EI+  L  + +K+K  GY P T  V  DI
Sbjct: 503 GTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDI 562

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            EEEKE  L  HSEK+A+AF ++NT   T +RV KNLR+C DCH A+  IS++Y RE++V
Sbjct: 563 SEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIV 622

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHFK G CSC DYW
Sbjct: 623 RDINRFHHFKGGCCSCGDYW 642


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 311/521 (59%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  TW TM+ G  ++   L A++++ +M   G+  D +T+  +L A   
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G+Q H+   R  +E  VFV ++LV MY+    ++ A  VF  M+ R++++W ++
Sbjct: 291 LAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  N    EA+  F EM  +G++PD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  A R+F EM   + VSW+ LV G A  G  KE ++LF++
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P  VTF+GVL ACS  G+V++G  YF  M+ ++GI+P  +H+ CM+DL  R+G
Sbjct: 471 MLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSG 530

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             K+A E+I+ M   P+A  W TLL +C + G+  I + A   LL+ +P++   YVLL +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A + +W  V  +RR M   +VKK PG S ++  N+V  F   D+SHP +  I+  L  
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEW 650

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + +K   +S+HSEK+AIAF L+      P+R+VKNLRV
Sbjct: 651 LNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRV 710

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+VRD  RFH F DG CSC D+W
Sbjct: 711 CVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 179/354 (50%), Gaps = 34/354 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELY-SKMHVSGIKPDTHTYPFLLKAISKLA 157
           +F+ + + +  ++N +I G++ + +P  +V+LY + +    ++P   T   ++   S L+
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA-------------------- 197
           D  +G   H   +R GF +  FV + LV MYA  G ++DA                    
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 198 ----CK-------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
               CK       +F+LM +RD + W +++ G   NG   EAL +FR M +EGV  D YT
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+ +AC  L AL  G++ H Y+ +    DNV V +AL+D YSKC  I  A+ VFR M 
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            RN +SW+ ++VG   N   +EA+  F EM++ G  P + T   V+ +C++   ++EG +
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG-A 399

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            F  +    G+M  I     +V L G+ G ++ A+     M    + V W  L+
Sbjct: 400 QFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALV 452



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 45/314 (14%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-A 236
           +F +N+L+   A    V D  ++F  M ERD V++N++I GF+S G P  ++ L+R +  
Sbjct: 79  LFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLR 138

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E V P   T+ ++    + L   ALG   H  V ++G      V + L+D Y+K G+I 
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIR 198

Query: 297 AAQRVFREMR-------------------------------KRNAVSWSTLVVGLAVNGF 325
            A+RVF+EM                                 R++++W+T+V GL  NG 
Sbjct: 199 DARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGL 258

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
             EAL++F+ M   G    + TF  +L AC     ++EG    +Y  R   E  +     
Sbjct: 259 QLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG-- 316

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL--L 440
               +VD+  +   ++ A E +   +   N + W  ++     +G +A +E A      +
Sbjct: 317 --SALVDMYSKCRSIRLA-EAVFRRMTCRNIISWTAMIVG---YGQNACSEEAVRAFSEM 370

Query: 441 QLEPKHSGDYVLLS 454
           Q++     D+ L S
Sbjct: 371 QMDGIKPDDFTLGS 384



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P  + +  L +A A+ G LA  RR    V+      N+   NALL   +   ++   +R+
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARR----VFDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACS---- 356
           F  M +R+AVS++ L+ G +  G    +++L++ +     V P  +T   ++   S    
Sbjct: 102 FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSD 161

Query: 357 -------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
                  HC ++  GF  +  +               +VD+  + GL++ A    Q M  
Sbjct: 162 RALGHSVHCQVLRLGFGAYAFVGSP------------LVDMYAKMGLIRDARRVFQEM-E 208

Query: 410 PPNAVIWRTLL 420
               V++ TL+
Sbjct: 209 AKTVVMYNTLI 219


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/524 (40%), Positives = 312/524 (59%), Gaps = 1/524 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  ++  +  TW+TM+ G+  +  P+ A+E+Y +M   G++ D      +++A
Sbjct: 154 MDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQA 213

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +   D RMG   H   +R+  +  V +  SLV MYA  G    A +VFELM  R+ V+W
Sbjct: 214 CAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSW 273

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I+  A  G  +EAL LFR M   G+ P+   +V    AC++LG L LG+  H ++ +
Sbjct: 274 SALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILR 333

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  +  V  A++D YSKCG + +AQ +F ++  R+ +SW+ ++     +G G++AL L
Sbjct: 334 T-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSL 392

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F+EM+     P   TF  +L A SH G+V+EG  +F  M +EYGI P  +H  C+VDLL 
Sbjct: 393 FQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLA 452

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV++A   + ++   P   I   LL  C  +    + E     +L+L+P   G   L
Sbjct: 453 RSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLAL 512

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           +SNLYA  + W  V+EVR+ M     KK PG S +E+   +  F M D+SHPQ  +I  M
Sbjct: 513 VSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQM 572

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           + ++  +++  GY+P+TE V+ D+EE  KE  LS HSE++A AF L+NT+PGT + V+KN
Sbjct: 573 VMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKN 632

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK +SK+  REIVVRD  RFHHFKDG CSC DYW
Sbjct: 633 LRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 187/360 (51%), Gaps = 22/360 (6%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           +I  WN ++  ++  A+P  A+ ++  +  +  +PD+ T+   L A ++L D+  GE   
Sbjct: 68  SIPAWNALLAAHSRGASPHEALRVFRALPPAA-RPDSTTFTLALSACARLGDLATGEVVT 126

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
             A   G+ + +FV +S++++YA  G + DA KVF+ M +RD V W++++ GF + G+P 
Sbjct: 127 DRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPV 186

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           +A+ ++  M  +G+E D   +V +  ACA  G   +G   H Y+ +  +  +V ++ +L+
Sbjct: 187 QAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLV 246

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D Y+K G+   A+RVF  M  RN VSWS L+  LA  G   EAL LF+ M++ G  P   
Sbjct: 247 DMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSG 306

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV-----DLLGRAGLVKQAY 401
             VG L ACS  G++  G       K  +G + +      MV     D+  + G +  A 
Sbjct: 307 PVVGALLACSDLGLLKLG-------KSIHGFILRTLELDRMVGTAVIDMYSKCGSLSSA- 358

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGH-----SAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           + + + ++  + + W  ++  C  HG      S   E+ R+   ++ P H+    LLS L
Sbjct: 359 QMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRN---EVRPDHATFASLLSAL 415



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 14/288 (4%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS-LVHMYAAFGHVKDACKVFEL--MS 205
           L + +S  A +R   + H++ I +   S   + +S L   YA  G +  A         S
Sbjct: 6   LRRLLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTS 65

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
              + AWN+++   +    P+EAL +FR +      PD  T     SACA LG LA G  
Sbjct: 66  PSSIPAWNALLAAHSRGASPHEALRVFRAL-PPAARPDSTTFTLALSACARLGDLATGEV 124

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
                   G  +++ V +++L+ Y+KCG +  A +VF  MRKR+ V+WST+V G    G 
Sbjct: 125 VTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQ 184

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS---YFKRMKDEYGIMPKIE 382
             +A+E++  M   G    EV  VGV+ AC+  G    G S   Y  R   +  ++    
Sbjct: 185 PVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTS 244

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACTIHGHS 429
               +VD+  + GL  QA    +  LMP  N V W  L+     +G++
Sbjct: 245 ----LVDMYAKNGLFDQARRVFE--LMPHRNDVSWSALISQLAQYGNA 286


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 332/587 (56%), Gaps = 8/587 (1%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
           S   P T +  + + LL     S H      A ++   +P  +      L+ A+      
Sbjct: 54  SLRPPSTLLSNRILHLL-----SSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRG 108

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTH-TYPFL 149
           ++ A  +F  +   + F+W+ ++  +     P  A+ +Y +M     G   D   T    
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L A +     R G + H   +R G ++   V ++L  MYA FG + DA  VF+ M  RD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+W ++++ +   G+  E   LF  M   G+ P+ +T   +  ACAE  +  LG++ H  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + K    D+    +AL+  YSK G +  A RVFR M K + VSW+ ++ G A NG   EA
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           L  F  +   GF P  VTFVGVL AC+H G+VD+G   F  +KD+YGI    +H+ C++D
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LL R+GL ++A + I  M + PN  +W +LLG C IH +  +A  A   L ++EP++   
Sbjct: 409 LLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPAT 468

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YV L+N+YA    +  V+ +RRTM    + K P  S +E+G RV  F +GD+SHPQ EEI
Sbjct: 469 YVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEI 528

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +A+L ++  K++ EGYV  T  V  D+E+E+K+  + YHSE++A+AF ++ T  G+P++V
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKV 588

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KNLR+C DCH  IKLISK+  REI+VRD +RFHHFK+G CSCRDYW
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 303/524 (57%), Gaps = 4/524 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  +   N+ TWN  I    +    L A+  + +      +P++ T+   L A   
Sbjct: 162 ACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVD 221

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNS 214
           +  + +G Q H+  +R G++  V V N L+  Y   G +  A  VF  +  R ++V+W S
Sbjct: 222 MVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCS 281

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++     N +   A  +F +   E VEP  + + S+ SACAELG L LGR  H    K  
Sbjct: 282 MLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALAVKAC 340

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           + DN+ V +AL+D Y KCG I  A++VF E+ +RN V+W+ ++ G A  G    AL LF+
Sbjct: 341 VEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFE 400

Query: 335 EMEIG--GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           EM +G  G  P  VT + +L  CS  G V+ G   F+ M+  YGI P  EHF C+VDLLG
Sbjct: 401 EMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLG 460

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+GLV +AYE+IQNM + P   +W  LLGAC +HG + + +IA   L +L+   SG++V+
Sbjct: 461 RSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVV 520

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+ A   RW     VR+ M    +KK  G+S + + NR+  F   D SH +  EI AM
Sbjct: 521 LSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAM 580

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L ++   +K  GYVP T     D+E+EEK   + YHSEKIA+AF L+    G P+R+ KN
Sbjct: 581 LGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKN 640

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH AIK IS++  REI+VRD  RFH FKDG CSC+DYW
Sbjct: 641 LRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 184/370 (49%), Gaps = 17/370 (4%)

Query: 60  KQVHAFSIR-HGVPLNNPD-LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           + +HA  IR H  PL  P  L  +L+     L   ++ A ++ S      + TW ++I G
Sbjct: 26  RTIHAHIIRTHVTPL--PSFLSNHLVNMYSKLDL-LNSAQHVLSLTHLRTVVTWTSLISG 82

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
              +   L A+  ++ M    ++P+  T+P + KA + +     G+Q H +A++ G    
Sbjct: 83  CVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYD 142

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VFV  S   MY   G   DAC +F+ M +R+L  WN+ I+    + +  +A+  F+E   
Sbjct: 143 VFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLC 202

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
              EP+  T  +  +AC ++  L LGR+ H ++ + G  ++V+V N L+DFY KCG I++
Sbjct: 203 VHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVS 262

Query: 298 AQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELF----KEMEIGGFVPGEVTFVGVL 352
           A+ VF  +  ++N VSW +++  L  N   + A  +F    KE+E     P +     VL
Sbjct: 263 AEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVE-----PTDFMISSVL 317

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            AC+  G ++ G S    +  +  +   I     +VD+ G+ G ++ A E + + L   N
Sbjct: 318 SACAELGGLELGRSVHA-LAVKACVEDNIFVGSALVDMYGKCGSIENA-EQVFSELPERN 375

Query: 413 AVIWRTLLGA 422
            V W  ++G 
Sbjct: 376 LVTWNAMIGG 385


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/507 (40%), Positives = 303/507 (59%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +W  MI+G A++     A+E + +M V G+K D + +  +L A   L  +  G+Q H+  
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI 296

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           IR  F+  ++V ++L+ MY     +  A  VF+ M ++++V+W +++ G+   G+  EA+
Sbjct: 297 IRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAV 356

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            +F +M   G++PD YT+    SACA + +L  G + H      GL   V V+N+L+  Y
Sbjct: 357 KIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLY 416

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            KCG I  + R+F EM  R+AVSW+ +V   A  G   E ++LF +M   G  P  VT  
Sbjct: 417 GKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLT 476

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           GV+ ACS  G+V++G  YFK M  EYGI+P I H+ CM+DL  R+G +++A  +I  M  
Sbjct: 477 GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPF 536

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
           PP+A+ W TLL AC   G+  I + A  +L++L+P H   Y LLS++YA + +W +V ++
Sbjct: 537 PPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQL 596

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           RR M ++ VKK PG S ++   ++  F   D S P  ++I+A L E+  K+   GY P T
Sbjct: 597 RRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDT 656

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
             V  D+EE  K   L+YHSE++AIAF L+    G P+RV KNLRVC DCH A K IS V
Sbjct: 657 SFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSV 716

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
             REI+VRD  RFH FKDG CSC D+W
Sbjct: 717 TGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 33/368 (8%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLK 151
           +S   + F  + D +  TWN +I GY+ S     AV+ Y+ M        T  T   +LK
Sbjct: 88  ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF---------- 201
             S    V +G+Q H   I+ GFES + V + L++MYA  G + DA KVF          
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 202 --ELMS------------------ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
              LM                   E+D V+W ++I G A NG   EA+  FREM  +G++
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK 267

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            D Y   S+  AC  LGA+  G++ H  + +    D++ V +AL+D Y KC  +  A+ V
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  M+++N VSW+ +VVG    G  +EA+++F +M+  G  P   T    + AC++   +
Sbjct: 328 FDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSL 387

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           +EG S F       G++  +     +V L G+ G +  +      M +  +AV W  ++ 
Sbjct: 388 EEG-SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSWTAMVS 445

Query: 422 ACTIHGHS 429
           A    G +
Sbjct: 446 AYAQFGRA 453



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 160/326 (49%), Gaps = 20/326 (6%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---M 93
           P  SV+  C  L  +     ++ KQ+HA  IR      N     Y+  A++ +      +
Sbjct: 272 PFGSVLPACGGLGAI-----NEGKQIHACIIR-----TNFQDHIYVGSALIDMYCKCKCL 321

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            YA  +F  ++  N+ +W  M+ GY ++     AV+++  M  SGI PD +T    + A 
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + ++ +  G Q H  AI +G    V V NSLV +Y   G + D+ ++F  M+ RD V+W 
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-K 272
           ++++ +A  G+  E + LF +M   G++PDG T+  + SAC+  G +  G+R    +  +
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSE 501

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGKE 328
            G+  ++   + ++D +S+ G +  A R    M    +A+ W+TL+      G    GK 
Sbjct: 502 YGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKW 561

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYA 354
           A E    +E+    P   T +  +YA
Sbjct: 562 AAESL--IELDPHHPAGYTLLSSIYA 585



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +F  N+L+  Y+  G + +    FE + +RD V WN +I G++ +G    A+  +  M  
Sbjct: 72  LFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMR 131

Query: 238 E-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           +        T++++    +  G ++LG++ H  V K+G    + V + LL  Y+  G I 
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCIS 191

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A++VF  +  RN V +++L+ GL   G  ++AL+LF+ ME        V++  ++   +
Sbjct: 192 DAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-----KDSVSWAAMIKGLA 246

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             G+  E    F+ MK + G+      FG ++   G  G + +  +
Sbjct: 247 QNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQ 291



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 62/249 (24%)

Query: 178 VFVQNSLVHMYAAF-------------------------------GHVKDACKVFELMSE 206
            F+ N++VH YA                                 G + +    FE + +
Sbjct: 41  TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPD 100

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRR 265
           RD V WN +I G++ +G    A+  +  M  +        T++++    +  G ++LG++
Sbjct: 101 RDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQ 160

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN---------------- 309
            H  V K+G    + V + LL  Y+  G I  A++VF  +  RN                
Sbjct: 161 IHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGM 220

Query: 310 --------------AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
                         +VSW+ ++ GLA NG  KEA+E F+EM++ G    +  F  VL AC
Sbjct: 221 IEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPAC 280

Query: 356 SHCGMVDEG 364
              G ++EG
Sbjct: 281 GGLGAINEG 289


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/518 (40%), Positives = 312/518 (60%), Gaps = 43/518 (8%)

Query: 142 DTHTYPFLLKAISKLADVR-----------MGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           + H++ FLL ++S   D             MG   H++A++ G    ++V+N+ +H Y  
Sbjct: 120 NPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV 179

Query: 191 FGHV-------------KD-------------------ACKVFELMSERDLVAWNSVING 218
            G V             +D                   A +VF+ M  RD V+W++VI G
Sbjct: 180 CGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGG 239

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +   G+P  AL +F+ M ++GV+ +   +V+  SA A+LG L  G+  H  V +VG++ +
Sbjct: 240 YVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMS 299

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           VN+  AL+D YSKCG + AA+ VF  M +R+  +W++++ GLA +G G +A++LF++   
Sbjct: 300 VNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVS 359

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            GF P  +TFVGVL ACS  G+VDEG  YFK M ++Y I  ++EH+GCMVDLL RAGLV+
Sbjct: 360 EGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQ 419

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A E I+ M +PP+ V+W T+L AC  HG   +     + L++L+P H G YVLL+++YA
Sbjct: 420 EAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYA 479

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             ++W  V++VR+ M      K+ G SL+E    V +F +GD +H  +  I+ ML  I +
Sbjct: 480 KAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINR 539

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           +L   GYVP   +V  DI +EEK  A+  HSE++AIA+  +    G+P+R+VKNL VC D
Sbjct: 540 RLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGD 599

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K+++KV+ REIVVRD SRFHH KDG CSC DYW
Sbjct: 600 CHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 35/277 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  +W+T+I GY +   P +A+ ++  M   G+K +       L A ++
Sbjct: 218 AREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQ 277

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +  G+  H V  R G    V +  +L+ MY+  G V  A +VF+ M  RD+ AWNS+
Sbjct: 278 LGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSM 337

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVG 274
           I G A++G  ++A+ LF +  SEG  P   T V + +AC+  G +  GRR    +  K  
Sbjct: 338 ICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYD 397

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +   +     ++D  S+ G++                               +EA+EL +
Sbjct: 398 IESEMEHYGCMVDLLSRAGLV-------------------------------QEAVELIE 426

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            M I    P  V +  +L AC   G+VD G +   ++
Sbjct: 427 GMRIP---PDPVLWGTILSACKRHGLVDLGITVGNKL 460


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/580 (37%), Positives = 337/580 (58%), Gaps = 8/580 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           ++SV+R C  L  +  +     K ++ + ++ G  L +    + ++  + +    M  A 
Sbjct: 310 VSSVLRACGHLRDLSLA-----KYIYNYMLKAGFVLEST--VRNILIDVYAKCGDMITAR 362

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
           ++F+ ++  +  +WN++I GY +S + + A++L+  M +   + D  TY  L+   ++LA
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLA 422

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           D++ G+  HS  I++G    + V N+L+ MYA  G V D+ K+F  M   D V WN+VI+
Sbjct: 423 DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVIS 482

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
                G     L +  +M    V PD  T +     CA L A  LG+  H  + + G   
Sbjct: 483 ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYES 542

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            + + NAL++ YSKCG +  + RVF  M +R+ V+W+ ++    + G G++ALE F +ME
Sbjct: 543 ELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADME 602

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G VP  V F+ ++YACSH G+VDEG + F++MK  Y I P IEH+ C+VDLL R+  +
Sbjct: 603 KSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKI 662

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            +A E+IQ M + P+A IW ++L AC   G    AE     +++L P   G  +L SN Y
Sbjct: 663 SKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAY 722

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A  ++W  V  +R+++  + + K PG+S +E+G  V  F  GD S PQ+E I+  L  + 
Sbjct: 723 AALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILY 782

Query: 518 KKLKLEGYVPRTENVFADI-EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             +  EGY+P    V  ++ EEEEK   +  HSE++AIAF L+NT PGTP++V+KNLRVC
Sbjct: 783 SLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVC 842

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH   KLISK+  REI+VRD +RFH FKDG CSC+D W
Sbjct: 843 GDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 175/306 (57%), Gaps = 4/306 (1%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTW 111
           +S+ ++L+++HA  I  G+  ++   GK LI        P S + ++F  V    N++ W
Sbjct: 17  SSNLNELRRIHALVISLGLDSSDFFSGK-LIDKYSHFREPAS-SLSVFRRVSPAKNVYLW 74

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N++IR ++++     A+E Y K+  S + PD +T+P ++KA + L D  MG+  +   + 
Sbjct: 75  NSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILD 134

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFES +FV N+LV MY+  G +  A +VF+ M  RDLV+WNS+I+G++S+G   EAL +
Sbjct: 135 MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEI 194

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           + E+ +  + PD +T+ S+  A   L  +  G+  H +  K G++  V VNN L+  Y K
Sbjct: 195 YHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLK 254

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
                 A+RVF EM  R++VS++T++ G       +E++ +F E  +  F P  +T   V
Sbjct: 255 FRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSV 313

Query: 352 LYACSH 357
           L AC H
Sbjct: 314 LRACGH 319



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS- 205
           PF+ +A+S  +++    + H++ I  G +S  F    L+  Y+ F     +  VF  +S 
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            +++  WNS+I  F+ NG   EAL  + ++    V PD YT  S+  ACA L    +G  
Sbjct: 68  AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            +  +  +G   ++ V NAL+D YS+ G++  A++VF EM  R+ VSW++L+ G + +G+
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            +EALE++ E++    VP   T   VL A  +  +V +G
Sbjct: 188 YEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 3/166 (1%)

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAV 322
           RR H  V  +GL  +   +  L+D YS      ++  VFR +   +N   W++++   + 
Sbjct: 24  RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSK 83

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NG   EALE + ++      P + TF  V+ AC+     + G   ++++ D  G    + 
Sbjct: 84  NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILD-MGFESDLF 142

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
               +VD+  R GL+ +A +    M +  + V W +L+   + HG+
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEMPV-RDLVSWNSLISGYSSHGY 187


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 341/580 (58%), Gaps = 8/580 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           +TSV+  C  L  +  +     K ++ + +R G  L +    K ++  + +    M  A 
Sbjct: 310 VTSVLCACGHLRDLSLA-----KYIYNYMLRAGFVLEST--VKNILIDVYAKCGDMITAR 362

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
           ++F+ ++  +  +WN++I GY +S + + A++L+  M +   + D  TY  L+   ++LA
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLA 422

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           D++ G+  HS  I++G    + V N+L+ MYA  G V D+ K+F  M   D V WN+VI+
Sbjct: 423 DLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVIS 482

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
                G     L +  +M    V PD  T +     CA L A  LG+  H  + + G   
Sbjct: 483 ACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYES 542

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            + + NAL++ YSKCG + ++ RVF  M +R+ V+W+ ++    + G G++ALE F +ME
Sbjct: 543 ELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDME 602

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G VP  V F+ ++YACSH G+V++G + F++MK  Y I P IEH+ C+VDLL R+  +
Sbjct: 603 KSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKI 662

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            +A E+IQ M + P+A IW ++L AC   G    AE     +++L P   G  +L SN Y
Sbjct: 663 SKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAY 722

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A  ++W  V  +R+++  + +KK PG+S +E+G +V  F  GD S PQ+E IH  L  + 
Sbjct: 723 AALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILY 782

Query: 518 KKLKLEGYVPRTENVFADI-EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             +  EGY+P +  V  ++ EEEEK   +  HSE++AIAF L+NT PGTP++V+KNLRVC
Sbjct: 783 SLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVC 842

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +DCH   KLISK+  REI+VRD +RFH FKDG CSC+D W
Sbjct: 843 SDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 176/306 (57%), Gaps = 4/306 (1%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTW 111
           +S+ ++L+++HA  I  G+  ++   GK LI        P S + ++F  V    N++ W
Sbjct: 17  SSNLNELRRIHALVISLGLDGSDFFSGK-LIDKYSHFRAPAS-SLSVFRRVSPAKNVYIW 74

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N++IR ++++     A+E Y K+  S + PD +T+P ++KA + L D  MG+  +   + 
Sbjct: 75  NSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILE 134

Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
            GFES ++V N+LV MY+  G +  A +VF+ M  RDLV+WNS+I+G++S+G   EAL +
Sbjct: 135 MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEI 194

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           + E+ +  + PD +T+ S+  A A L  +  G+  H +  K G++    VNN LL  Y K
Sbjct: 195 YHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLK 254

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
                 A+RVF EM  R++V+++T++ G       +E++++F E  +  F P  +T   V
Sbjct: 255 FSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSV 313

Query: 352 LYACSH 357
           L AC H
Sbjct: 314 LCACGH 319



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-E 206
           F+ +A+S  +++    + H++ I  G +   F    L+  Y+ F     +  VF  +S  
Sbjct: 9   FISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPA 68

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           +++  WNS+I  F+ NG   +AL  + ++    V PD YT  S+  ACA L    +G   
Sbjct: 69  KNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           +  + ++G   ++ V NAL+D YS+ G++  A++VF EM  R+ VSW++L+ G + +G+ 
Sbjct: 129 YKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +EALE++ E+     VP   T   VL A ++  +V +G
Sbjct: 189 EEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQG 226



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAV 322
           RR H  V  +GL  +   +  L+D YS      ++  VFR +   +N   W++++   + 
Sbjct: 24  RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSK 83

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           NG+  +ALE + ++      P + TF  V+ AC+     + G   +K++  E G    + 
Sbjct: 84  NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQIL-EMGFESDLY 142

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
               +VD+  R GL+ +A +    M +  + V W +L+   + HG+
Sbjct: 143 VGNALVDMYSRMGLLSRARQVFDEMPV-RDLVSWNSLISGYSSHGY 187


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 340/560 (60%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K+VHA++IR+G+  +N  +G  LI  YA       M YA   F  + + ++ +W T+I G
Sbjct: 369 KEVHAYAIRNGLD-SNMQIGNTLIDMYAKCCCVKHMGYA---FECMHEKDLISWTTIIAG 424

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           YA++   L A+ L+ K+ V G+  D      +L+A S L       + H    +      
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD- 483

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           + +QN++V++Y   GH   A + FE +  +D+V+W S+I     NG P EAL LF  +  
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             ++PD   ++S  SA A L +L  G+  H ++ + G      + ++L+D Y+ CG +  
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           ++++F  +++R+ + W++++    ++G G EA+ LFK+M     +P  +TF+ +LYACSH
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSH 663

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G++ EG  +F+ MK  Y + P  EH+ CMVDLL R+  +++AY+++++M + P++ +W 
Sbjct: 664 SGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWC 723

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LLGAC IH +  + E+A   LLQ + K+SG Y L+SN++A + RW +V+EVR  M    
Sbjct: 724 ALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL-KLEGYVPRTENVFADI 536
           +KK PG S +E+ N++  F   D+SHPQT++I+  LA+ TK L K  GY+ +T+ VF ++
Sbjct: 784 LKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNV 843

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            EEEK   L  HSE++A+ + L+ T  GT +R+ KNLR+C DCH   K+ S+V  R +VV
Sbjct: 844 SEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVV 903

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF+ G CSC D+W
Sbjct: 904 RDANRFHHFERGLCSCGDFW 923



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 148/271 (54%), Gaps = 2/271 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + +  IFTWN M+  +  S   L A+ELY +M V G+  D  T+P +LKA   
Sbjct: 98  AVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGA 157

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWN 213
           L + R+G + H VA++ GF   VFV N+L+ MY   G +  A  +F+  +M + D V+WN
Sbjct: 158 LGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+I+   + GK  EAL+LFR M   GV  + YT V+      +   + LG   H    K 
Sbjct: 218 SIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKS 277

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
               +V V NAL+  Y+KCG +  A+RVF  M  R+ VSW+TL+ GL  N   ++AL  F
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYF 337

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           ++M+     P +V+ + ++ A    G +  G
Sbjct: 338 RDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 193/386 (50%), Gaps = 20/386 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F+ +   +  +WNT++ G  ++     A+  +  M  S  KPD  +   L+ A
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAA 358

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
             +  ++  G++ H+ AIRNG +S + + N+L+ MYA    VK     FE M E+DL++W
Sbjct: 359 SGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISW 418

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G+A N    EA+ LFR++  +G++ D   + S+  AC+ L +    R  H YV+K
Sbjct: 419 TTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L+D + + NA+++ Y + G    A+R F  +R ++ VSW++++     NG   EALEL
Sbjct: 479 RDLAD-IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF------GC 386
           F  ++     P  +  +  L A ++        S  K+ K+ +G + +   F        
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATAN-------LSSLKKGKEIHGFLIRKGFFLEGPIASS 590

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
           +VD+    G V+ + +   + +   + ++W +++ A  +H  G+ AIA   + T   + P
Sbjct: 591 LVDMYACCGTVENSRKMFHS-VKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIP 649

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVR 470
            H      L+ LYA     L V+  R
Sbjct: 650 DH---ITFLALLYACSHSGLMVEGKR 672



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 173/334 (51%), Gaps = 21/334 (6%)

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++  +  +WN++I  +      L A+ L+ +M   G+  +T+T+   L+ +   + V++G
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
              H  A+++   + V+V N+L+ MYA  G ++DA +VF  M  RD V+WN++++G   N
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
               +AL  FR+M +   +PD  ++++L +A    G L  G+  H Y  + GL  N+ + 
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIG 387

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y+KC  +      F  M +++ +SW+T++ G A N    EA+ LF+++++ G  
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447

Query: 343 PGEVTFVGVLYACSHCGMVDEGF------SYFKRMKDEYGIMPKIEHFGCMVDLLGRAG- 395
              +    VL ACS  G+    F        FKR  D   IM +      +V++ G  G 
Sbjct: 448 VDPMMIGSVLRACS--GLKSRNFIREIHGYVFKR--DLADIMLQ----NAIVNVYGEVGH 499

Query: 396 --LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
               ++A+E I++     + V W +++  C  +G
Sbjct: 500 RDYARRAFESIRS----KDIVSWTSMITCCVHNG 529



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 18/285 (6%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           H +  LL     +  +  G+Q H+  +++   +  F+   L+HMY   G +KDA KVF+ 
Sbjct: 47  HAHSLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDE 104

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M+ER +  WN+++  F S+GK  EA+ L++EM   GV  D  T  S+  AC  LG   LG
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE--MRKRNAVSWSTLVVGLA 321
              H    K G  + V V NAL+  Y KCG +  A+ +F    M K + VSW++++    
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
             G   EAL LF+ M+  G      TFV  L          E  S+ K     +G   K 
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGV-------EDPSFVKLGMGIHGAALKS 277

Query: 382 EHFG------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            HF        ++ +  + G ++ A     +ML   + V W TLL
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAERVFASMLC-RDYVSWNTLL 321


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/524 (41%), Positives = 317/524 (60%), Gaps = 8/524 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A   F  +   +  +WNTMI G+A++     A +L+  M    +     T+  ++  
Sbjct: 54  MERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVV----TWNAMISG 109

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
             +  D+   +    +  +  F+S+V    +++  Y   G +  A ++FE M E++LV W
Sbjct: 110 YVECGDL---DSALKLFEKAPFKSVV-AWTAMITGYMKLGRIGLAERLFEKMPEKNLVTW 165

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G+  N +  + + LFR M   G++P+  T+ S    C+EL AL LGR+ H  V K
Sbjct: 166 NAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCK 225

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L D+     +L+  Y KCG++    ++F ++ +R+ V+W+ ++ G A +G GK+AL L
Sbjct: 226 SPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGL 285

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F EM   G  P  +TFV VL AC+H G  D G  YF  M  +YG++ K +H+ CMVDLLG
Sbjct: 286 FDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLG 345

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A + I+ M   P+A ++ TLLGAC IH ++ +AE A   LL L+P  +  YV 
Sbjct: 346 RAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQ 405

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L+N+YA  +RW +V  VR++M   +V KTPG+S +E+ +   +F  GD+ HP+   IH  
Sbjct: 406 LANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGK 465

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+ KK+KL GYVP  E    D+ EE+KE  L +HSEK+AIA+ L+   PGTP+RV KN
Sbjct: 466 LKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKN 525

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH AIK IS++  REI+VRD +RFHHFKDGHCSC DYW
Sbjct: 526 LRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+++  Y    +++ A   FE M  +D  +WN++I GFA N + ++A  LF  M ++ V 
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV- 100

Query: 242 PDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
                M+S +  C +L  AL L  +A           +V    A++  Y K G I  A+R
Sbjct: 101 VTWNAMISGYVECGDLDSALKLFEKAPF--------KSVVAWTAMITGYMKLGRIGLAER 152

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F +M ++N V+W+ ++ G   N   ++ ++LF+ M   G  P   T    L  CS    
Sbjct: 153 LFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSA 212

Query: 361 VDEG 364
           +  G
Sbjct: 213 LQLG 216


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/551 (40%), Positives = 326/551 (59%), Gaps = 17/551 (3%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           VH   ++ G   ++     Y++ +++ L      +  A  +FS   D ++ +WN MI GY
Sbjct: 22  VHTHVVKSGFECDS-----YIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGY 76

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +         ++ +M    +  D  ++  ++   + +  +   ++           S  
Sbjct: 77  VKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSW- 131

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              NS++  +   G+V++A  +F  M  RD+V+WNS++  +A  GKPNEAL LF +M + 
Sbjct: 132 ---NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 188

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+P   T+VSL SACA LGAL  G   HTY+    +  N  V  AL+D Y+KCG I  A
Sbjct: 189 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            +VF  M  ++ ++W+T++ G+A++G  KEA +LFKEM+     P ++TFV +L ACSH 
Sbjct: 249 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHA 308

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           GMVDEG      M   YGI PK+EH+ C++DLL RAGL+++A E I  M M PN      
Sbjct: 309 GMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGA 368

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLG C IHG+  + E+    L+ L+P HSG Y+LLSN+YA  ++W + ++VR  M    +
Sbjct: 369 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 428

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADIE 537
            K PG S++EL   V  F  GD SHP++ +I+  L EI  +LK   GY   T NV  D+E
Sbjct: 429 SKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDME 488

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EE+KE AL+ HSEK+AIA+ L++      +R+VKNLRVC DCH   KLISKVY REI+VR
Sbjct: 489 EEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVR 548

Query: 598 DRSRFHHFKDG 608
           DR+RFHHF+DG
Sbjct: 549 DRNRFHHFEDG 559



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 145/284 (51%), Gaps = 10/284 (3%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYPF++KA ++ +    G   H+  +++GFE   ++ NSL+H+YA    +  A ++F L 
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           S+RD+V+WN++I+G+   G+      +F  M    V     +  ++ +  A +G +   +
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAK 117

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           R    ++      N+   N++L  + KCG +  A  +F EM  R+ VSW++++   A  G
Sbjct: 118 R----LFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCG 173

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
              EAL LF +M   G  P E T V +L AC+H G +D+G      + D    +  I   
Sbjct: 174 KPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGT 233

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             +VD+  + G +  A + + N +   + + W T++    IHGH
Sbjct: 234 A-LVDMYAKCGKISLATQ-VFNAMESKDVLAWNTIIAGMAIHGH 275


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 336/574 (58%), Gaps = 32/574 (5%)

Query: 74  NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
           +N  +G  LI A  S+   +  A  +F  +   ++ +W  M+  +AE+     A++L+S+
Sbjct: 172 SNAFVGTALIDA-YSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQ 230

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G KP+  T+  + KA   L    +G+  H  A+++ +E  ++V  +L+ +Y   G 
Sbjct: 231 MRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGD 290

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           + DA + FE + ++D++ W+ +I  +A + +  EA+ +F +M    V P+ +T  S+  A
Sbjct: 291 IDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQA 350

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA +  L LG + H +V K+GL  +V V+NAL+D Y+KCG +  +  +F E   RN V+W
Sbjct: 351 CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTW 410

Query: 314 STLVVGLAVNGFGKEALELFKEM--------------------EIGGFVPG--------- 344
           +T++VG    G G++AL LF  M                     +    PG         
Sbjct: 411 NTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVK 470

Query: 345 --EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             ++TFVGVL AC++ G++D+G +YF  M  ++GI P IEH+ CMV LLGR G + +A +
Sbjct: 471 PDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVK 530

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
            I  +   P+ ++WR LLGAC IH    +  I+   +L++EP+    +VLLSN+YA  +R
Sbjct: 531 LIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKR 590

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W NV  VR+ M ++ VKK PG S +E    V  F +GD SHP+   I+ ML  +  K K 
Sbjct: 591 WDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKK 650

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GY+P    V  D+E+EEKE  L  HSE++A++F ++ T  G+P+R++KNLR+C DCH A
Sbjct: 651 AGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAA 710

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK ISKV  REIVVRD +RFHHF++G CSC DYW
Sbjct: 711 IKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 140/261 (53%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N  ++ T+I+GYAES   L A+EL+ ++H  G + +   +  +LK +  
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                +G   H+   + G ES  FV  +L+  Y+  G V  A +VF+ +  +D+V+W  +
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           +  FA N    EAL LF +M   G +P+ +T  S+F AC  L A  +G+  H    K   
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V  ALLD Y+K G I  A+R F E+ K++ + WS ++   A +   KEA+E+F +
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQ 331

Query: 336 MEIGGFVPGEVTFVGVLYACS 356
           M     +P + TF  VL AC+
Sbjct: 332 MRQALVLPNQFTFASVLQACA 352



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 116/232 (50%)

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           HVS  + ++H Y   L+   +  +   G+  H   ++ G    +F  N L++MY     +
Sbjct: 30  HVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFL 89

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            DA K+F+ M ER+ +++ ++I G+A + +  EA+ LF  +  EG E + +   ++    
Sbjct: 90  CDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLL 149

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
                  LG   H  ++K+G   N  V  AL+D YS CG +  A+ VF  +  ++ VSW+
Sbjct: 150 VSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWT 209

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            +V   A N   KEAL+LF +M + GF P   TF  V  AC      D G S
Sbjct: 210 GMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKS 261


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/484 (42%), Positives = 311/484 (64%), Gaps = 5/484 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   GIKP+  TY  +L A   ++   M    H+ AI+  +     V  +L+  Y   G+
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V +A KVF+ + E+D+VAW+++I G+A  G    A+ +F +MA E ++P+ YT   + +A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 254 CAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           CA   A +  G++ H +  K   ++ + V++ALL  YSK G I +A  VF+  R+R+ VS
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVS 176

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W++++ G A +G+G++ALE+F+EM+        VTF+GV+ AC+H G+ +EG  YF  M 
Sbjct: 177 WNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMV 236

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            ++ I P++EH+ CMVDL GRAG++ +A E I  M  P +A +WRTLL A  IH +  + 
Sbjct: 237 KDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVG 296

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
           ++A   L+ L+P++   YVLL+N+YA    W    +VR+ M +++VKK  G+S +E+ N+
Sbjct: 297 KLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNK 356

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKI 552
            + F  GD SHP + +I+A L E++ +LK  GY P T  VF D++EE KE  LS HSE++
Sbjct: 357 TYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERL 416

Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           AIAF L+ T PGTP+++VKNLRVC DCH  IKLIS +  R+IVVRD +RFHHFK G CSC
Sbjct: 417 AIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSC 476

Query: 613 RDYW 616
            DYW
Sbjct: 477 GDYW 480



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 146/266 (54%), Gaps = 5/266 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           ++HA +I+    + +P +G  L+ A V     +  A  +F  +++ +I  W+ MI GYA+
Sbjct: 27  EMHAQAIKRNY-VKSPSVGTALLDAYVKRG-NVDEASKVFQRIEEKDIVAWSAMICGYAQ 84

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSVAIRNGFESLVF 179
             +   AV ++ +M    IKP+ +T+  ++ A +   A V  G+Q H+ +I++ F + + 
Sbjct: 85  IGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALC 144

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V ++L+ MY+  G ++ A +VF+   ERDLV+WNS+I+G+A +G   +AL +F EM  + 
Sbjct: 145 VSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQN 204

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAA 298
           +E DG T + + SAC   G    G+R    + K   +   +   + ++D Y + G+++ A
Sbjct: 205 LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKA 264

Query: 299 QRVFREMR-KRNAVSWSTLVVGLAVN 323
             +  EM    +A  W TL+    ++
Sbjct: 265 MEIINEMPFPASANVWRTLLAASCIH 290


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 342/629 (54%), Gaps = 66/629 (10%)

Query: 46  ITLLQV---CAS-SKHKL-KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHN 98
           ITL+ V   CAS   H L KQ+H F++   + + N  +G  L+  YA   +   M  A+ 
Sbjct: 230 ITLVNVLPPCASLGTHSLGKQLHCFAVTSEM-IQNMFVGNCLVDMYAKCGM---MDEANT 285

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH----------------------- 135
           +FS++   ++ +WN M+ GY++      AV L+ KM                        
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 136 ------------VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-------NGFES 176
                        SGIKP+  T   +L   + +  +  G++ H  AI+       NG   
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGD 405

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFRE 234
              V N L+ MYA    V  A  +F+ +S  ERD+V W  +I G++ +G  N+AL L  E
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465

Query: 235 MASEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN-----VNNALLD 287
           M  E  +  P+ +T+     ACA L AL +G++ H Y     L +  N     V+N L+D
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAY----ALRNQQNAVPLFVSNCLID 521

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG I  A+ VF  M  +N V+W++L+ G  ++G+G+EAL +F EM   GF    VT
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
            + VLYACSH GM+D+G  YF RMK  +G+ P  EH+ C+VDLLGRAG +  A   I+ M
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEM 641

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
            M P  V+W   L  C IHG   + E A   + +L   H G Y LLSNLYA   RW +V 
Sbjct: 642 PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVT 701

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
            +R  M  + VKK PG S VE       FF+GD++HP  +EI+ +L +  +++K  GYVP
Sbjct: 702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVP 761

Query: 528 RTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
            T     D+++EEK+D L  HSEK+A+A+ ++ T  G  +R+ KNLRVC DCH A   +S
Sbjct: 762 ETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMS 821

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++   +I++RD SRFHHFK+G CSC+ YW
Sbjct: 822 RIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 51/380 (13%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           +K    ST A +  P    + KC T+ QV        K +H   +  G+   N  L  +L
Sbjct: 18  IKVSLFSTSAPEITP--PFIHKCKTISQV--------KLIHQKLLSFGILTLN--LTSHL 65

Query: 83  IYAIVSLSFPMSYAHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
           I   +S+   +S+A ++       D  ++ WN++IR Y ++      + L+  MH     
Sbjct: 66  ISTYISVGC-LSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD +T+PF+ KA  +++ VR GE  H++++  GF S VFV N+LV MY+    + DA KV
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGA 259
           F+ MS  D+V+WNS+I  +A  GKP  AL +F  M +E G  PD  T+V++   CA LG 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV- 318
            +LG++ H +     +  N+ V N L+D Y+KCG++  A  VF  M  ++ VSW+ +V  
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 319 ----------------------------------GLAVNGFGKEALELFKEMEIGGFVPG 344
                                             G A  G G EAL + ++M   G  P 
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 345 EVTFVGVLYACSHCGMVDEG 364
           EVT + VL  C+  G +  G
Sbjct: 365 EVTLISVLSGCASVGALMHG 384



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 135/310 (43%), Gaps = 26/310 (8%)

Query: 184 LVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           L+  Y + G +  A  +      S+  +  WNS+I  +  NG  N+ L LF  M S    
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD YT   +F AC E+ ++  G  AH      G   NV V NAL+  YS+C  +  A++V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSHCGM 360
           F EM   + VSW++++   A  G  K ALE+F  M    G  P  +T V VL  C+  G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 361 VDEG-----FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
              G     F+    M     +        C+VD+  + G++ +A     NM +  + V 
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDEANTVFSNMSV-KDVVS 297

Query: 416 WRTLLGACTIHGHSAIAEIARSTLL---QLEPKHSGDYVLLS-NLYAYEQRWLNVQE--V 469
           W  +     + G+S I     +  L     E K   D V  S  +  Y QR L  +   V
Sbjct: 298 WNAM-----VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGV 352

Query: 470 RRTMVKERVK 479
            R M+   +K
Sbjct: 353 CRQMLSSGIK 362


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 307/547 (56%), Gaps = 35/547 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +PN+ TWN ++ G   S   L AV    +MH  G  PD       L A+  + +V +G+Q
Sbjct: 115 EPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQ 174

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   ++ G      V  +L+ MY   G   +  +VF   S  D+ + N+++ G + N +
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 225 PNEALTLFRE-----------------------------------MASEGVEPDGYTMVS 249
            +EAL LFRE                                   M S GVEP+  T+  
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPC 294

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  A A + AL  GR AH +  + G   +V V +AL+D Y+KCG    A+ +F  M  RN
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRN 354

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            VSW+ ++ G A++G    A++LF  M+     P  VTF  VL ACS  G+ +EG  YF 
Sbjct: 355 VVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFN 414

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M+  +GI P++EH+ CMV LLGR+G + +AY+ I  M   P++ IW +LLG+C ++G+ 
Sbjct: 415 EMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNV 474

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +AE+A   L QLEP ++G+YVLLSN+YA ++ W  V  VR  M    +KK  G S +E+
Sbjct: 475 LLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEI 534

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
            N+V     GD SHP    I   L ++T ++   G+ P  + V  D+EE+EK++ L+ HS
Sbjct: 535 KNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHS 594

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+A  L++T PGTP+RV+KNLR+C DCH A+K IS    REI VRD +RFHHFKDG 
Sbjct: 595 EKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGK 654

Query: 610 CSCRDYW 616
           CSC DYW
Sbjct: 655 CSCGDYW 661



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 143/368 (38%), Gaps = 76/368 (20%)

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
           HVS   PD H  P  LK+       R     H+ A+ +G     FV +SL+H Y   G  
Sbjct: 13  HVS-FPPDPHLLPSALKSCPAQPLAR---ALHAAAVVSGLAEDPFVASSLLHSYIRLGAT 68

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL---- 250
             A  VF+ M E+++V W+++I G+++ G    A  L  +M S GVEP+  T   L    
Sbjct: 69  GAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGL 128

Query: 251 -------------------------------FSACAELGALALGRRAHTYVWKVGLSDNV 279
                                           SA  ++  +++G++ H YV K G   + 
Sbjct: 129 NRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDA 188

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  AL+D Y KCG      RVF E    +  S + LV GL+ N    EAL LF+E    
Sbjct: 189 CVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICR 248

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC------------- 386
           G     V++  ++  C   G   E    F+ M+   G+ P      C             
Sbjct: 249 GVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQ-SIGVEPNSVTIPCVLPAFANVAALMH 307

Query: 387 ----------------------MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
                                 +VD+  + G  + A   I + +   N V W  ++G   
Sbjct: 308 GRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHA-RTIFDAMPSRNVVSWNAMIGGYA 366

Query: 425 IHGHSAIA 432
           +HG +A A
Sbjct: 367 MHGDAANA 374



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 63/270 (23%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +  H FS+R G  L++  +G  L+  YA    +    +A  IF  +   N+ +WN MI G
Sbjct: 309 RSAHCFSLRKGF-LHDVYVGSALVDMYAKCGKA---RHARTIFDAMPSRNVVSWNAMIGG 364

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG-------EQTHSVAI 170
           YA   +   AV+L+  M     KPD  T+  +L A S+      G       +Q H ++ 
Sbjct: 365 YAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISP 424

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           R            + H          AC V  L                  +GK +EA  
Sbjct: 425 R------------MEHY---------ACMVTLL----------------GRSGKLDEAYD 447

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL--DF 288
           L  EM     EPD     SL  +C   G + L   A   ++++   +  N  N +L  + 
Sbjct: 448 LINEMP---FEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQL---EPGNAGNYVLLSNI 501

Query: 289 YSKCGIIIAAQRVFREM-----RKRNAVSW 313
           Y+   +     RV  EM     +K    SW
Sbjct: 502 YASKKMWDGVNRVRDEMKNMGLKKEKGCSW 531


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 341/584 (58%), Gaps = 16/584 (2%)

Query: 40  SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---A 96
           S+V+  +  +  C S  +    +HA  I+    LN  D   ++   +VS+ F + Y   A
Sbjct: 140 SIVQSLVFAISSCTSVSY-CSAIHARVIK---SLNYSD--GFIGDRLVSMYFKLGYDEDA 193

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISK 155
             +F  + + ++ +WN+++ G +        +  + +M   SG +P+  T   ++ A + 
Sbjct: 194 QRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAX 253

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  +  G+  H V ++ G      V NSL++MY   G +  A ++FE M  R LV+WNS+
Sbjct: 254 MGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSM 313

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA---HTYVWK 272
           +     NG   + + LF  M   G+ PD  TMV+L  AC + G   LGR+A   H Y+ +
Sbjct: 314 VVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG---LGRQAESIHAYIHR 370

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G + ++ +  ALL+ Y+K G + A++ +F E++ R+ ++W+ ++ G AV+  G+EA++L
Sbjct: 371 CGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKL 430

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           F  M   G     VTF  +L ACSH G+V+EG  YF+ M + Y + P+++H+ CMVDLLG
Sbjct: 431 FDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLG 490

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           R+G ++ AYE I++M M P++ +W  LLGAC ++G+  + +     LL L+P    +Y++
Sbjct: 491 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIM 550

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+Y+    W    +VR  M + R+ + PG S +E GN++  F +GD+ HP+++EIH  
Sbjct: 551 LSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTK 610

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L E+ +K+   G  P+TE V  DI+EE K D ++ HSEK+AIAF L+ T  G P+ + KN
Sbjct: 611 LEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKN 670

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LR+C DCH   K  S +  R I++RD  RFHHF DG CSCRDYW
Sbjct: 671 LRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 328/562 (58%), Gaps = 53/562 (9%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF-----PMSYAHNIFSHVQDPNIFTWNTMI 115
           Q+H  +++HG       L  +L  A   +        + +A  +F  +  PN+  WN ++
Sbjct: 294 QMHCQALKHG-------LDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVV 346

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
                  +   A E++ KM V       HT                              
Sbjct: 347 TACFRGNDVSGAREIFDKMLVR-----NHT------------------------------ 371

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
                 N ++  Y   G ++ A ++F  M  RD V+W+++I GF+ NG  NE+ + FRE+
Sbjct: 372 ----SWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
               + P+  ++  + SAC++ GA   G+  H +V K G S  V+VNNAL+D YS+CG +
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487

Query: 296 IAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
             A+ VF  M+ KR+ VSW++++ GLA++G G+EA+ +F EM   G +P E++F+ +LYA
Sbjct: 488 PMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G++ EG  YF +MK  Y I P +EH+GCMVDL GR+G +++AY +I  M +PP A+
Sbjct: 548 CSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAI 607

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +WRTLLGAC+ HG+  +AE  +  L +L+P +SGD VLLSN+YA   +W +V  +R++M+
Sbjct: 608 VWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMI 667

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVF 533
            +R+KK    SLVE+G  +++F   ++      E H  L EI  +L+ E GY P   +  
Sbjct: 668 VQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASAL 727

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D+EEEEKED +S HSEK+A+AF L     G  +R+VKNLR+C DCH  +KL S+VY  E
Sbjct: 728 YDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVE 787

Query: 594 IVVRDRSRFHHFKDGHCSCRDY 615
           IV+RDR+RFH FKDG CSC DY
Sbjct: 788 IVIRDRNRFHSFKDGSCSCGDY 809



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 43/372 (11%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L Q+H F I+ GV  ++  +GK +++  +S+S  + YA  +     +P+ F +NT++RGY
Sbjct: 188 LTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGY 247

Query: 119 AESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           +ES  P  +V ++ +M   G I PD+ ++ F++KA +    +R G Q H  A+++G +S 
Sbjct: 248 SESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSH 307

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +FV  +L+ MY   G V  A KVF+ M + +LVAWN+V+         + A  +F +M  
Sbjct: 308 LFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLV 367

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
                                      R HT  W           N +L  Y K G +  
Sbjct: 368 ---------------------------RNHT-SW-----------NVMLAGYIKAGELEC 388

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+R+F EM  R+ VSWST++VG + NG   E+   F+E+      P EV+  GVL ACS 
Sbjct: 389 AKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQ 448

Query: 358 CGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
            G  + G +    + K  Y  +  + +   ++D+  R G V  A    + M    + V W
Sbjct: 449 SGAFEFGKTLHGFVEKSGYSWIVSVNN--ALIDMYSRCGNVPMARLVFEGMQEKRSIVSW 506

Query: 417 RTLLGACTIHGH 428
            +++    +HGH
Sbjct: 507 TSMIAGLAMHGH 518


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 318/521 (61%), Gaps = 2/521 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   ++ +W  +I GY++S     A+ L+ KM   G +P+  T   LLKA   
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q H+ +++ G++  V V +SL+ MYA + H+++A  +F  ++ +++V+WN++
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A  G+    + LF +M  +G EP  +T  S+  ACA  G+L  G+  H +V K G 
Sbjct: 279 IAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG 337

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N L+D Y+K G I  A++VFR + K++ VSW++++ G A +G G EAL+LF++
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P E+TF+ VL ACSH G++DEG  YF+ MK ++ I  ++ H   +VDLLGRAG
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAG 456

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A ++I+ M + P A +W  LLGAC +H +  +   A   + +L+P  SG +VLLSN
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   R  +  +VR+ M +  VKK P  S VE+ N V  F   D SHP  EEI  M  +
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ K+K  GYVP T +V   + ++++E  L YHSEK+A+AF ++ T PG  +R+ KN+R+
Sbjct: 577 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 636

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K  S+V  REI+VRD +RFHHF  G CSCRDYW
Sbjct: 637 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 160/300 (53%), Gaps = 5/300 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           ++   ++P+   Y  +L   + L  ++ G   H+    + FE  + + N +++MYA  G 
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           +++A  +F+ M  +D+V+W  +I+G++ +G+ +EAL LF +M   G +P+ +T+ SL  A
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
                +   GR+ H +  K G   NV+V ++LLD Y++   +  A+ +F  +  +N VSW
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + L+ G A  G G+  + LF +M   GF P   T+  VL AC+  G +++G  +      
Sbjct: 276 NALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG-KWVHAHVI 333

Query: 374 EYGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           + G  P I + G  ++D+  ++G +K A +  +  L+  + V W +++     HG  A A
Sbjct: 334 KSGGQP-IAYIGNTLIDMYAKSGSIKDAKKVFRR-LVKQDIVSWNSIISGYAQHGLGAEA 391



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 149/293 (50%), Gaps = 14/293 (4%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S H  +Q+HAFS+++G  +N   +G  L+      +  M  A  IF+ +   N+ +WN +
Sbjct: 221 SDHHGRQLHAFSLKYGYDMN-VHVGSSLLDMYARWAH-MREAKVIFNSLAAKNVVSWNAL 278

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           I G+A        + L+ +M   G +P   TY  +L A +    +  G+  H+  I++G 
Sbjct: 279 IAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG 337

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           + + ++ N+L+ MYA  G +KDA KVF  + ++D+V+WNS+I+G+A +G   EAL LF +
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M    V+P+  T +S+ +AC+  G L  G+     + K  +   V  +  ++D   + G 
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 457

Query: 295 IIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           +  A +   EM  K  A  W  L+           A  + K M++G +   ++
Sbjct: 458 LNEANKFIEEMPIKPTAAVWGALL----------GACRMHKNMDLGVYAAEQI 500


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 337/579 (58%), Gaps = 7/579 (1%)

Query: 42  VRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFPMSYAHN 98
           VR   ++L  C++     + +++HA     G  L   DL  +  +  + +    +  A  
Sbjct: 220 VRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL---DLSLQNALLTMYARCKCLDDAAK 276

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF  +   ++ +W+ MI  +AE+     A+E YSKM + G++P+ +T+  +L A + + D
Sbjct: 277 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 336

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +R G   H   + NG++  +    +LV +Y ++G + +A  +F+ +  RD   W  +I G
Sbjct: 337 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 396

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVS-LFSACAELGALALGRRAHTYVWKVGLSD 277
           ++  G     L L+REM +    P    + S + SACA LGA A  R+AH+ +   G+  
Sbjct: 397 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 456

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  +  +L++ YS+ G + +A++VF +M  R+ ++W+TL+ G A +G    AL L+KEME
Sbjct: 457 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME 516

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
           + G  P E+TF+ VLYACSH G+ ++G   F  ++ +Y + P I H+ C++DLL RAG +
Sbjct: 517 LEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRL 576

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
             A E I  M + PN V W +LLGA  IH     A  A   + +L+P     YVLLSN++
Sbjct: 577 SDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVH 636

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A       +  VR TMV   VKK  G S +E+ +++ EF +GD SHP+ +EI A L  ++
Sbjct: 637 AVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLS 696

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K+K  GYVP +E V  D+ E+EKE  L  HSEK+AIAF L+ TAPGT +R+   LR+C 
Sbjct: 697 PKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICH 756

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A+K IS +  REI+VRD SRFH F+DG CSC DYW
Sbjct: 757 DCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 56/467 (11%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  +   N ++W +M+  YA++ +   A++LY +M    ++P+   Y  +L A + 
Sbjct: 77  ARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACAS 133

Query: 156 LADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +  +  G+  HS ++   G +  V ++NSL+ MYA  G ++DA ++FE MS R + +WN+
Sbjct: 134 IKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNA 193

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I  +A +G   EA+ L+ +M    VEP   T  S+ SAC+ LG L  GR+ H  +   G
Sbjct: 194 MIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRG 250

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              ++++ NALL  Y++C  +  A ++F+ + +R+ VSWS ++   A      EA+E + 
Sbjct: 251 TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS 310

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEG-------------------------FSYFK 369
           +M++ G  P   TF  VL AC+  G +  G                         ++ + 
Sbjct: 311 KMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG 370

Query: 370 RMKDEYGIMPKIEHF--GCMVDLLG-------RAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            + +   +  +IE+   G    L+G       R G+++   E      +P   +I+  ++
Sbjct: 371 SLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVI 430

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
            AC   G  A A  A S +         D+VL ++L     RW N++  R+   K   + 
Sbjct: 431 SACASLGAFADARQAHSDIEA--DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRD 488

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
           T   + +           G   H +    H +   + K+++LEG  P
Sbjct: 489 TLAWTTL---------IAGYAKHGE----HGLALGLYKEMELEGAEP 522



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 204/442 (46%), Gaps = 25/442 (5%)

Query: 34  QENPITSVVRKCITLLQVCASSK--HKLKQVHAF-----SIRHGVPLNNPDLGKYLIYAI 86
           Q NP+        T+L  CAS K   + K +H+       ++  V L N  L  Y     
Sbjct: 118 QPNPVVYT-----TVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMY----- 167

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
            +    +  A  +F  +   ++ +WN MI  YA+S +   A+ LY  M V   +P   T+
Sbjct: 168 -AKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV---EPSVRTF 223

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             +L A S L  +  G + H++    G E  + +QN+L+ MYA    + DA K+F+ +  
Sbjct: 224 TSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPR 283

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           RD+V+W+++I  FA     +EA+  + +M  EGV P+ YT  S+  ACA +G L  GR  
Sbjct: 284 RDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAV 343

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  +   G    +    AL+D Y+  G +  A+ +F ++  R+   W+ L+ G +  G  
Sbjct: 344 HDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHR 403

Query: 327 KEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
              LEL++EM+    VP  ++ +  V+ AC+  G   +       ++ + G++       
Sbjct: 404 TGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLAT 462

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            +V++  R G ++ A +    M    + + W TL+     HG   +A +     ++LE  
Sbjct: 463 SLVNMYSRWGNLESARQVFDKM-SSRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGA 520

Query: 446 HSGDYVLLSNLYAYEQRWLNVQ 467
              +   +  LYA     L  Q
Sbjct: 521 EPSELTFMVVLYACSHAGLQEQ 542



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A+ +  D+    Q H   I     + VF+ N +V  Y   G V  A   F+ ++ ++  +
Sbjct: 33  ALRQCQDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYS 91

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W S++  +A NG    AL L++ M    ++P+     ++  ACA + AL  G+  H+ + 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRIS 148

Query: 272 KV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              GL  +V + N+LL  Y+KCG +  A+R+F  M  R+  SW+ ++   A +G  +EA+
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAI 208

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            L+++M++    P   TF  VL ACS+ G++D+G
Sbjct: 209 RLYEDMDV---EPSVRTFTSVLSACSNLGLLDQG 239



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S NV + N ++  Y KCG + +A+  F  + ++N  SW +++   A NG  + AL+L+K 
Sbjct: 55  SANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR 114

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++    P  V +  VL AC+    ++EG +   R+    G+   +     ++ +  + G
Sbjct: 115 MDLQ---PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG 171

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            ++ A    + M    +   W  ++ A    GH
Sbjct: 172 SLEDAKRLFERM-SGRSVSSWNAMIAAYAQSGH 203


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 337/579 (58%), Gaps = 7/579 (1%)

Query: 42  VRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFPMSYAHN 98
           VR   ++L  C++     + +++HA     G  L   DL  +  +  + +    +  A  
Sbjct: 221 VRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL---DLSLQNALLTMYARCKCLDDAAK 277

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF  +   ++ +W+ MI  +AE+     A+E YSKM + G++P+ +T+  +L A + + D
Sbjct: 278 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 337

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +R G   H   + NG++  +    +LV +Y ++G + +A  +F+ +  RD   W  +I G
Sbjct: 338 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 397

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVS-LFSACAELGALALGRRAHTYVWKVGLSD 277
           ++  G     L L+REM +    P    + S + SACA LGA A  R+AH+ +   G+  
Sbjct: 398 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 457

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  +  +L++ YS+ G + +A++VF +M  R+ ++W+TL+ G A +G    AL L+KEME
Sbjct: 458 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME 517

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
           + G  P E+TF+ VLYACSH G+ ++G   F  ++ +Y + P I H+ C++DLL RAG +
Sbjct: 518 LEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRL 577

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
             A E I  M + PN V W +LLGA  IH     A  A   + +L+P     YVLLSN++
Sbjct: 578 SDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVH 637

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A       +  VR TMV   VKK  G S +E+ +++ EF +GD SHP+ +EI A L  ++
Sbjct: 638 AVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLS 697

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            K+K  GYVP +E V  D+ E+EKE  L  HSEK+AIAF L+ TAPGT +R+   LR+C 
Sbjct: 698 PKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICH 757

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH A+K IS +  REI+VRD SRFH F+DG CSC DYW
Sbjct: 758 DCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 217/464 (46%), Gaps = 57/464 (12%)

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   N ++W +M+  YA++ +   A++LY +M    ++P+   Y  +L A + +  +
Sbjct: 81  FDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIEAL 137

Query: 160 RMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVIN 217
             G+  HS ++   G +  V ++NSL+ MYA  G ++DA ++FE MS  R + +WN++I 
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIA 197

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
            +A +G   EA+ L+ +M    VEP   T  S+ SAC+ LG L  GR+ H  +   G   
Sbjct: 198 AYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL 254

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           ++++ NALL  Y++C  +  A ++F+ + +R+ VSWS ++   A      EA+E + +M+
Sbjct: 255 DLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQ 314

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEG-------------------------FSYFKRMK 372
           + G  P   TF  VL AC+  G +  G                         ++ +  + 
Sbjct: 315 LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLD 374

Query: 373 DEYGIMPKIEHF--GCMVDLLG-------RAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
           +   +  +IE+   G    L+G       R G+++   E      +P   +I+  ++ AC
Sbjct: 375 EARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISAC 434

Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
              G  A A  A S +         D+VL ++L     RW N++  R+   K   + T  
Sbjct: 435 ASLGAFADARQAHSDIEA--DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 492

Query: 484 HSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
            + +           G   H +    H +   + K+++LEG  P
Sbjct: 493 WTTL---------IAGYAKHGE----HGLALGLYKEMELEGAEP 523



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 175/362 (48%), Gaps = 7/362 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +WN MI  YA+S +   A+ LY  M V   +P   T+  +L A S L  +  G + H
Sbjct: 188 SVSSWNAMIAAYAQSGHFEEAIRLYEDMDV---EPSVRTFTSVLSACSNLGLLDQGRKIH 244

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           ++    G E  + +QN+L+ MYA    + DA K+F+ +  RD+V+W+++I  FA     +
Sbjct: 245 ALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFD 304

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           EA+  + +M  EGV P+ YT  S+  ACA +G L  GR  H  +   G    +    AL+
Sbjct: 305 EAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALV 364

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-E 345
           D Y+  G +  A+ +F ++  R+   W+ L+ G +  G     LEL++EM+    VP  +
Sbjct: 365 DLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATK 424

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           + +  V+ AC+  G   +       ++ + G++        +V++  R G ++ A +   
Sbjct: 425 IIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFD 483

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M    + + W TL+     HG   +A +     ++LE     +   +  LYA     L 
Sbjct: 484 KM-SSRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGAEPSELTFMVVLYACSHAGLQ 541

Query: 466 VQ 467
            Q
Sbjct: 542 EQ 543



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A+ +  D+    Q H   I     + VF+ N +V  Y   G V  A   F+ ++ ++  +
Sbjct: 33  ALRQCQDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYS 91

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W S++  +A NG    AL L++ M    ++P+     ++  ACA + AL  G+  H+ + 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRIS 148

Query: 272 KV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV-SWSTLVVGLAVNGFGKEA 329
              GL  +V + N+LL  Y+KCG +  A+R+F  M  R +V SW+ ++   A +G  +EA
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA 208

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + L+++M++    P   TF  VL ACS+ G++D+G
Sbjct: 209 IRLYEDMDVE---PSVRTFTSVLSACSNLGLLDQG 240



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S NV + N ++  Y KCG + +A+  F  + ++N  SW +++   A NG  + AL+L+K 
Sbjct: 55  SANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR 114

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++    P  V +  VL AC+    ++EG +   R+    G+   +     ++ +  + G
Sbjct: 115 MDLQ---PNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG 171

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            ++ A    + M    +   W  ++ A    GH
Sbjct: 172 SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGH 204


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 304/519 (58%), Gaps = 36/519 (6%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   N+ +WN MI GYA++  P   + L  +M +SG  PD  T   ++ A      
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------ 265

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
                                        Y   G V +A +VF    E+D+V W +++ G
Sbjct: 266 -----------------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVG 296

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG+  +AL LF EM  E +EPD YT+ S+ S+CA+L +L  G+  H      GL++N
Sbjct: 297 YAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNN 356

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V++AL+D YSKCG I  A+ VF  M  RN VSW+ ++VG A NG  K+ALELF+ M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             F P  VTF+G+L AC HC  +++G  YF  + +++G+ P ++H+ CMV+LLGR G ++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           QA   I+NM   P+ +IW TLL  C+  G    AE+A   L +L+P  +  Y++LSN+YA
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              RW +V  VR  M  + VKK  G S +E+ N V  F   DR+HP++E+I+  L  +  
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG-TPVRVVKNLRVCA 577
           KL+ EG+ P T  V  D+ E+EK  ++ +HSEK+A+AF L+    G +P+R++KN+R+C 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH  +K  S++  R+I++RD +RFHHF  G CSC D W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 164/341 (48%), Gaps = 47/341 (13%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           ++NT I G++ ++ P  ++EL+ +M   G +P  +T   +L A ++L+D+R G+Q H   
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I   F   VF+ N+L  MYA  G ++ A  +F+ +++++LV+WN +I+G+A NG+P + +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            L  +M   G  PD  TM ++ +A                                   Y
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAA-----------------------------------Y 266

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            +CG +  A+RVF E ++++ V W+ ++VG A NG  ++AL LF EM +    P   T  
Sbjct: 267 CQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLS 326

Query: 350 GVLYACS-----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            V+ +C+     H G    G S    + +   +         ++D+  + G +  A   +
Sbjct: 327 SVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGFIDDA-RSV 379

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            N++   N V W  ++  C  +GH   A      +LQ + K
Sbjct: 380 FNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK 420



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 49/306 (16%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----------------------- 215
           F+ N L+H+YA FG ++DA  +F+ M +RD+ +WN++                       
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 216 --------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
                   I GF+ N  P E+L LF+ M  EG EP  YT+VS+ +A A+L  L  G++ H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIH 178

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             +       NV + NAL D Y+KCG I  A+ +F  + K+N VSW+ ++ G A NG  +
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           + + L  +M + G +P +VT   ++ A   CG VDE    F   K++      I  +  M
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAM 293

Query: 388 VDLLGRAGLVKQAYEYIQNMLM---PPNAVIWRTLLGAC----------TIHGHSAIAEI 434
           +    + G  + A      ML+    P++    +++ +C           +HG S +A +
Sbjct: 294 MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGL 353

Query: 435 ARSTLL 440
             + L+
Sbjct: 354 NNNLLV 359



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 2/231 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +FS  ++ +I  W  M+ GYA++     A+ L+++M +  I+PD++T   ++ + +K
Sbjct: 275 ARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAK 334

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G+  H  +I  G  + + V ++L+ MY+  G + DA  VF LM  R++V+WN++
Sbjct: 335 LASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAM 394

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I G A NG   +AL LF  M  +  +PD  T + + SAC     +  G+     +    G
Sbjct: 395 IVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHG 454

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           ++  ++    +++   + G I  A  + + M    + + WSTL+   +  G
Sbjct: 455 MTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 343/581 (59%), Gaps = 18/581 (3%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           T++Q C S   ++KQ+ +  +  G   ++    + L    +S    +S+A  IF ++  P
Sbjct: 8   TMIQKCVSFS-QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKP 66

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKM------HVSGIKPDTHTYPFLLKAISKLADVR 160
               WN +IRG+A S++P LA   Y  M        +  + D  T  F LKA ++     
Sbjct: 67  LTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSS 126

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
             +Q H    R G  +   +  +L+  Y+  G +  A K+F+ M  RD+ +WN++I G  
Sbjct: 127 AMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLV 186

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGLSDNV 279
           S  + +EA+ L++ M +EG+     T+V+   AC+ LG +  G    H Y      +DNV
Sbjct: 187 SGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS-----NDNV 241

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            V+NA +D YSKCG +  A +VF +   K++ V+W+T++ G AV+G    ALE+F ++E 
Sbjct: 242 IVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLED 301

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G  P +V+++  L AC H G+V+ G S F  M  + G+   ++H+GC+VDLL RAG ++
Sbjct: 302 NGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLR 360

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A++ I +M M P+ V+W++LLGA  I+    +AEIA   + ++   + GD+VLLSN+YA
Sbjct: 361 EAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYA 420

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
            + RW +V  VR  M  ++VKK PG S +E    + EF+  D+SH Q  EI+  + EI  
Sbjct: 421 AQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRF 480

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAF---MLVNTAPGTPVRVVKNLRV 575
           K++ +GYV +T  V  DI EEEKE+AL YHSEK+A+A+   M+      +PVRV+ NLR+
Sbjct: 481 KIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRI 540

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  K ISK+Y REI+VRDR RFH FKDG CSCRD+W
Sbjct: 541 CGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 313/521 (60%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++  W+ MI  YA+S     A++L+ +M  + + P+  T+  +L+A + 
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+Q HS  ++ G  S VFV N+++ +YA  G ++++ K+FE + +R+ V WN++
Sbjct: 351 SVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTI 410

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+   G    A+ LF  M    ++P   T  S+  A A L AL  G + H+   K   
Sbjct: 411 IVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY 470

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + +  V N+L+D Y+KCG I  A+  F +M KR+ VSW+ ++ G +++G   EAL LF  
Sbjct: 471 NKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDM 530

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M+     P ++TFVGVL ACS+ G++ +G ++F+ M  +Y I P IEH+ CMV LLGR G
Sbjct: 531 MQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLG 590

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
              +A + I  +   P+ ++WR LLGAC IH    +  +    +L++EP     +VLLSN
Sbjct: 591 RFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSN 650

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW NV  VR+ M K++V+K PG S VE    V  F +GD SHP  + I AML  
Sbjct: 651 MYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEW 710

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           + KK +  GYVP    V  D++++EKE  L  HSE++A+A+ L+ T     +R++KNLR+
Sbjct: 711 LNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRI 770

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH  +KLISKV  REIV+RD +RFHHF+ G CSC DYW
Sbjct: 771 CIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 178/338 (52%), Gaps = 10/338 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  +   ++ +W  M+  YAE+     +++L+++M + G KP+  T    LK+   
Sbjct: 190 ARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLG 249

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L    +G+  H  A++  ++  +FV  +L+ +YA  G + DA ++FE M + DL+ W+ +
Sbjct: 250 LEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLM 309

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +A + +  EAL LF  M    V P+ +T  S+  ACA   +L LG++ H+ V K GL
Sbjct: 310 IARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGL 369

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + NV V+NA++D Y+KCG I  + ++F E+  RN V+W+T++VG    G G+ A+ LF  
Sbjct: 370 NSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTH 429

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY----FKRMKDEYGIMPKIEHFGCMVDLL 391
           M      P EVT+  VL A +    ++ G        K M ++  ++        ++D+ 
Sbjct: 430 MLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVA-----NSLIDMY 484

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            + G +  A      M    + V W  ++   ++HG S
Sbjct: 485 AKCGRINDARLTFDKM-NKRDEVSWNAMICGYSMHGMS 521



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 166/361 (45%), Gaps = 4/361 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K +H   ++ G  L+     + ++      S  +  A  +F  +   N  ++ T+ +GY+
Sbjct: 55  KHLHCHILKRGTSLDL--FAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
                  A+    ++   G + +   +  LLK +  +    +    H+   + G  +  F
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V  +L+  Y+  G+V  A  VF+ +  +D+V+W  ++  +A N    E+L LF +M   G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            +P+ +T+     +C  L A  +G+  H    K     ++ V  ALL+ Y+K G II AQ
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           R+F EM K + + WS ++   A +   KEAL+LF  M     VP   TF  VL AC+   
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
            +D G         ++G+   +     ++D+  + G ++ + +  +  L   N V W T+
Sbjct: 353 SLDLG-KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEE-LPDRNDVTWNTI 410

Query: 420 L 420
           +
Sbjct: 411 I 411



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 142 DTHTYPFLLKAISKL-ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           D+H+Y  +L+ I +  AD   G+  H   ++ G    +F QN L++ Y     ++DA K+
Sbjct: 33  DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ M + + +++ ++  G++ + + ++AL     +  EG E + +   +L      +   
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA 152

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            L    H  V+K+G   +  V  AL+D YS  G +  A+ VF ++  ++ VSW+ +V   
Sbjct: 153 HLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACY 212

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
           A N F +E+L+LF +M I G+ P   T  G L +C
Sbjct: 213 AENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/521 (41%), Positives = 314/521 (60%), Gaps = 15/521 (2%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAISKLADVRMGE 163
           P     N  +RG A S +P  ++ L +   +  +  +PD  +  F LKA ++ +D     
Sbjct: 65  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTV 124

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H++ +R G  + V +  +L+  YA  G +  A KVF+ M+ RD+  WNS++ G A   
Sbjct: 125 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 184

Query: 224 KPNEALTLFREMASE------GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           +PN AL LF  +A+         EP+  T+V+  SACA++G L  G   H +  + GL  
Sbjct: 185 EPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR 244

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           NV V N+L+D YSKCG +  A  VF  ++   R  VS++  +   +++G G +AL LF E
Sbjct: 245 NVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDE 304

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  VT++ VL  C+H G+VD+G   F  M+    + P ++H+G +VDLLGRAG
Sbjct: 305 MPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAG 359

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +AY+ + +M  P + V+W+TLLGA  +HG   +AE+A + L +L     GDYVLLSN
Sbjct: 360 RLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSN 419

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA + RW++V  VR TM    V+K PG S  E+   + +F  GD+ HP+ +EI+  L +
Sbjct: 420 VYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALED 479

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I  ++   GY P T NV  DI EEEK+ AL YHSEK+AIAF L+ T PG  +RV+KNLR+
Sbjct: 480 IVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRI 539

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH+  KLISK Y R IV+RDR+RFH F+DG CSCRDYW
Sbjct: 540 CGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 580


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 304/519 (58%), Gaps = 36/519 (6%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   N+ +WN MI GYA++  P   + L  +M +SG  PD  T   ++ A      
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------ 265

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
                                        Y   G V +A +VF    E+D+V W +++ G
Sbjct: 266 -----------------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVG 296

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +A NG+  +AL LF EM  E +EPD YT+ S+ S+CA+L +L  G+  H      GL++N
Sbjct: 297 YAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNN 356

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V++AL+D YSKCG I  A+ VF  M  RN VSW+ ++VG A NG  K+ALELF+ M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             F P  VTF+G+L AC HC  +++G  YF  + +++G+ P ++H+ CMV+LLGR G ++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           QA   I+NM   P+ +IW TLL  C+  G    AE+A   L +L+P  +  Y++LSN+YA
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
              RW +V  VR  M  + VKK  G S +E+ N V  F   DR+HP++E+I+  L  +  
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG-TPVRVVKNLRVCA 577
           KL+ EG+ P T  V  D+ E+EK  ++ +HSEK+A+AF L+    G +P+R++KN+R+C 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH  +K  S++  R+I++RD +RFHHF  G CSC D W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 163/341 (47%), Gaps = 47/341 (13%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           ++NT I G++ ++ P  ++EL+ +M   G +P  +T   +L A ++L D+R G+Q H   
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I   F   VF+ N+L  MYA  G ++ A  +F+ +++++LV+WN +I+G+A NG+P + +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            L  +M   G  PD  TM ++ +A                                   Y
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAA-----------------------------------Y 266

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            +CG +  A+RVF E ++++ V W+ ++VG A NG  ++AL LF EM +    P   T  
Sbjct: 267 CQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLS 326

Query: 350 GVLYACS-----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            V+ +C+     H G    G S    + +   +         ++D+  + G +  A   +
Sbjct: 327 SVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGFIDDA-RSV 379

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            N++   N V W  ++  C  +GH   A      +LQ + K
Sbjct: 380 FNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK 420



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 49/306 (16%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----------------------- 215
           F+ N L+H+YA FG ++DA  +F+ M +RD  +WN++                       
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 216 --------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
                   I GF+ N  P E+L LF+ M  EG EP  YT+VS+ +A A+L  L  G++ H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIH 178

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             +       NV + NAL D Y+KCG I  A+ +F  + K+N VSW+ ++ G A NG  +
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           + + L  +M + G +P +VT   ++ A   CG VDE    F   K++      I  +  M
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAM 293

Query: 388 VDLLGRAGLVKQAYEYIQNMLM---PPNAVIWRTLLGAC----------TIHGHSAIAEI 434
           +    + G  + A      ML+    P++    +++ +C           +HG S +A +
Sbjct: 294 MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGL 353

Query: 435 ARSTLL 440
             + L+
Sbjct: 354 NNNLLV 359



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 2/231 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +FS  ++ +I  W  M+ GYA++     A+ L+++M +  I+PD++T   ++ + +K
Sbjct: 275 ARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAK 334

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA +  G+  H  +I  G  + + V ++L+ MY+  G + DA  VF LM  R++V+WN++
Sbjct: 335 LASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAM 394

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-G 274
           I G A NG   +AL LF  M  +  +PD  T + + SAC     +  G+     +    G
Sbjct: 395 IVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHG 454

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG 324
           ++  ++    +++   + G I  A  + + M    + + WSTL+   +  G
Sbjct: 455 MTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/522 (41%), Positives = 315/522 (60%), Gaps = 12/522 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ TW+ +I GYA+      A++++ +M + G +P+  T   LL   +    +  G++TH
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 167 SVAIR-------NGFESLVFVQNSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVIN 217
             AI+       N     + V N+L+ MY+     K A  +F+L+   +R +V W  +I 
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 218 GFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           G A +G+ NEAL LF +M      V P+ +T+     ACA LGAL  GR+ H YV +   
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529

Query: 276 -SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            S  + V N L+D YSK G + AA+ VF  M +RN VSW++L+ G  ++G G+EAL++F 
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 589

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EM+    VP  VTFV VLYACSH GMVD+G +YF  M  ++G++P  EH+ CMVDLL RA
Sbjct: 590 EMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 649

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A E I+ M M P   +W  LL AC ++ +  + E A + LL+LE  + G Y LLS
Sbjct: 650 GRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLS 709

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA  + W +V  +R  M    +KK PG S V+       FF GD SHP +++I+ +L 
Sbjct: 710 NIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLR 769

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +++K  GYVP       D+++EEK D LS HSEK+A+A+ ++ TAPG P+R+ KNLR
Sbjct: 770 DLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLR 829

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH A   IS +   EI+VRD SRFHHFK+G CSCR YW
Sbjct: 830 ACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 229/474 (48%), Gaps = 75/474 (15%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
           + + + ST +S  +  +++  +C +L    AS++   +Q+    +  G+P ++P    ++
Sbjct: 36  LTTFFFSTASSTTDLTSTLFHQCKSL----ASAELTHQQL----LVQGLP-HDP---THI 83

Query: 83  IYAIVSLSFPMSYAHNIFS--HVQDPNIFTWNTMIR-----GYAESANPLLAVELYSKMH 135
           I   ++ + P + A ++    H     +F WN +IR     G+ E       ++LY +M 
Sbjct: 84  ISMYLTFNSP-AKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDV-----LQLYRRMQ 137

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
             G +PD +T+PF+LKA  ++   R G   H+V   +GFE  VFV N LV MY   G  +
Sbjct: 138 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 197

Query: 196 DACKVFELMSER---DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLF 251
           +A +VF+ M ER   DLV+WNS++  +   G    A+ +F  M  + G+ PD  ++V++ 
Sbjct: 198 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 257

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--- 308
            ACA +GA + G++ H Y  + GL ++V V NA++D Y+KCG++  A +VF  M+ +   
Sbjct: 258 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 317

Query: 309 --------------------------------NAVSWSTLVVGLAVNGFGKEALELFKEM 336
                                           N V+WS ++ G A  G G EAL++F++M
Sbjct: 318 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGF-SYFKRMK-----DEYGIMPKIEHFGCMVDL 390
            + G  P  VT V +L  C+  G +  G  ++   +K     DE      +     ++D+
Sbjct: 378 LLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 437

Query: 391 LGRAGLVKQAYEYIQNMLMPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
             +    K A       L+PP   + V W  L+G    HG +  A    S +LQ
Sbjct: 438 YSKCKSPKAARAMFD--LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 489



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 188/385 (48%), Gaps = 57/385 (14%)

Query: 96  AHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLK 151
           A  +F  +++    ++ +WN+++  Y +  + + A++++ +M    GI+PD  +   +L 
Sbjct: 199 ARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLP 258

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A + +     G+Q H  A+R+G    VFV N++V MYA  G +++A KVFE M  +D+V+
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 318

Query: 212 WNS-----------------------------------VINGFASNGKPNEALTLFREMA 236
           WN+                                   VI G+A  G   EAL +FR+M 
Sbjct: 319 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML 378

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYV--WKVGL-----SDNVNVNNALLDFY 289
             G EP+  T+VSL S CA  G L  G+  H +   W + L      D++ V NAL+D Y
Sbjct: 379 LCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMY 438

Query: 290 SKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFV-PGE 345
           SKC    AA+ +F  +  + R+ V+W+ L+ G A +G   EALELF +M +   FV P  
Sbjct: 439 SKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNA 498

Query: 346 VTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
            T    L AC+  G +  G    +Y  R + E  ++       C++D+  ++G V  A  
Sbjct: 499 FTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN---CLIDMYSKSGDVDAARV 555

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
              NM    N V W +L+    +HG
Sbjct: 556 VFDNM-HQRNGVSWTSLMTGYGMHG 579



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 21/331 (6%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYL--IYAIVSL----SFPMSYAH 97
           ++LL  CAS+   L  K+ H  +I+  + L+  D G  L  I A++ +      P + A 
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA-AR 448

Query: 98  NIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAI 153
            +F  +  +D ++ TW  +I G A+      A+EL+S+M      + P+  T    L A 
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 508

Query: 154 SKLADVRMGEQTHSVAIRNGFES-LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++L  +R G Q H+  +RN FES ++FV N L+ MY+  G V  A  VF+ M +R+ V+W
Sbjct: 509 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSW 568

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            S++ G+  +G+  EAL +F EM    + PDG T V +  AC+  G +  G      + K
Sbjct: 569 TSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNK 628

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGK 327
             G+         ++D  S+ G +  A  + R M  K     W  L+    V      G+
Sbjct: 629 DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGE 688

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            A     E+E G    G  T +  +YA + C
Sbjct: 689 YAANQLLELESGN--DGSYTLLSNIYANARC 717


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/521 (39%), Positives = 310/521 (59%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  TW TM+ G  ++   L A++++ +M   G+  D +T+  +L A   
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA    G+Q H+   R  +E  VFV ++LV MY+    ++ A  VF  M+ R++++W ++
Sbjct: 291 LAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  N    EA+  F EM  +G++PD +T+ S+ S+CA L +L  G + H      GL
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V+NAL+  Y KCG I  A R+F EM   + VSW+ LV G A  G  KE ++LF++
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M + G  P  VTF+GVL ACS  G+V++G  YF  M+ ++ I+P  +H+ CM+DL  R+G
Sbjct: 471 MLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSG 530

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             K+A E+I+ M   P+A  W TLL +C + G+  I + A   LL+ +P++   YVLL +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A + +W  V  +RR M   +VKK PG S ++  N+V  F   D+SHP +  I+  L  
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEW 650

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + +K   +S+HSEK+AIAF L+      P+R+VKNLRV
Sbjct: 651 LNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRV 710

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+VRD  RFH F DG CSC D+W
Sbjct: 711 CVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 178/354 (50%), Gaps = 34/354 (9%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELY-SKMHVSGIKPDTHTYPFLLKAISKLA 157
           +F+ + + +  ++N +I G++ + +P  +V+LY + +    ++P   T   ++   S L+
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA-------------------- 197
           D  +G   H   +R GF +  FV + LV MYA  G ++DA                    
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 198 ----CK-------VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
               CK       +F+LM +RD + W +++ G   NG   EAL +FR M +EGV  D YT
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
             S+ +AC  L A   G++ H Y+ +    DNV V +AL+D YSKC  I  A+ VFR M 
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            RN +SW+ ++VG   N   +EA+  F EM++ G  P + T   V+ +C++   ++EG +
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG-A 399

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            F  +    G+M  I     +V L G+ G ++ A+     M    + V W  L+
Sbjct: 400 QFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALV 452



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-A 236
           +F +N+L+   A    V D  ++F  M ERD V++N++I GF+S G P  ++ L+R +  
Sbjct: 79  LFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLR 138

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E V P   T+ ++    + L   ALG   H  V ++G      V + L+D Y+K G+I 
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIR 198

Query: 297 AAQRVFREMR-------------------------------KRNAVSWSTLVVGLAVNGF 325
            A+RVF+EM                                 R++++W+T+V GL  NG 
Sbjct: 199 DARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGL 258

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIE 382
             EAL++F+ M   G    + TF  +L AC      +EG    +Y  R   E  +     
Sbjct: 259 QLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVG-- 316

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL--L 440
               +VD+  +   ++ A E +   +   N + W  ++     +G +A +E A      +
Sbjct: 317 --SALVDMYSKCRSIRLA-EAVFRRMTCRNIISWTAMIVG---YGQNACSEEAVRAFSEM 370

Query: 441 QLEPKHSGDYVLLS 454
           Q++     D+ L S
Sbjct: 371 QMDGIKPDDFTLGS 384



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P  + +  L +A A+ G LA  RR    V+      N+   NALL   +   ++   +R+
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARR----VFDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACS---- 356
           F  M +R+AVS++ L+ G +  G    +++L++ +     V P  +T   ++   S    
Sbjct: 102 FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSD 161

Query: 357 -------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
                  HC ++  GF  +  +               +VD+  + GL++ A    Q M  
Sbjct: 162 RALGHSVHCQVLRLGFGAYAFVGSP------------LVDMYAKMGLIRDARRVFQEM-E 208

Query: 410 PPNAVIWRTLL 420
               V++ TL+
Sbjct: 209 AKTVVMYNTLI 219


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 343/612 (56%), Gaps = 47/612 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM------SYAHNI 99
           + +L+ C SS ++ K+VHA      + + N     Y++  ++ L   +      SY   +
Sbjct: 12  VRILERC-SSLNQAKEVHA-----QIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLL 65

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           FS +  PN F W  +IR YA       A+  YS M    + P + T+  L  A + +   
Sbjct: 66  FSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHS 125

Query: 160 RMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---------- 208
            +G Q H+   +  GF S ++V N+++ MY   G ++ A  VF+ M ERD          
Sbjct: 126 ALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVA 185

Query: 209 ---------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
                                +V W +++ G+A N  P +AL +FR +  EGVE D  T+
Sbjct: 186 YTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTL 245

Query: 248 VSLFSACAELGALALGR--RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           V + SACA+LGA       R        G+ DNV V +AL+D YSKCG +  A  VF+ M
Sbjct: 246 VGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGM 305

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           R+RN  S+S+++VG A++G  + A++LF +M   G  P  VTFVGVL ACSH G+VD+G 
Sbjct: 306 RERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQ 365

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
             F  M+  YG+ P  E + CM DLL RAG +++A + ++ M M  +  +W  LLGA  +
Sbjct: 366 QLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHV 425

Query: 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485
           HG+  +AEIA   L +LEP + G+Y+LLSN YA   RW +V +VR+ + ++ +KK PG S
Sbjct: 426 HGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWS 485

Query: 486 LVELGN-RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
            VE  N  + +F  GD SHP+  EI   L ++ ++LK  GY P   ++   I + EK   
Sbjct: 486 WVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLL 545

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L  HSEK+A+AF L++T  G+ ++++KNLR+C DCH+ +   SKV  R+IVVRD +RFHH
Sbjct: 546 LMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHH 605

Query: 605 FKDGHCSCRDYW 616
           F +G CSC ++W
Sbjct: 606 FLNGACSCSNFW 617


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/562 (39%), Positives = 317/562 (56%), Gaps = 9/562 (1%)

Query: 60  KQVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           KQ+HA +++ G  L+       + +Y+   L      A N+F  +   N+ TWN  +   
Sbjct: 129 KQLHALALKGGNILDVFVGCSAFDMYSKTGLR---PEARNMFDEMPHRNLATWNAYMSNA 185

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +    L A+  + K      +P+  T+   L A + +  + +G Q H   +R+ +   V
Sbjct: 186 VQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDV 245

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V N L+  Y   G +  +  VF  +    R++V+W S++     N +   A  +F +  
Sbjct: 246 SVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR 305

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            E VEP  + + S+ SACAELG L LGR  H    K  + +N+ V +AL+D Y KCG I 
Sbjct: 306 KE-VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIE 364

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG--GFVPGEVTFVGVLYA 354
            A++VFREM +RN V+W+ ++ G A  G    AL LF+EM  G  G     VT V VL A
Sbjct: 365 YAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSA 424

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CS  G V+ G   F+ M+  YGI P  EH+ C+VDLLGR+GLV +AYE+I+ M + P   
Sbjct: 425 CSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTIS 484

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           +W  LLGAC +HG + + +IA   L +L+P  SG++V+ SN+ A   RW     VR+ M 
Sbjct: 485 VWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMR 544

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
              +KK  G+S V + NRV  F   D  H +  EI AMLA++  ++K  GYVP       
Sbjct: 545 DIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLF 604

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D+EEEEK   + YHSEKIA+AF L+    G P+R+ KNLR+C DCH AIK ISK+  REI
Sbjct: 605 DLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREI 664

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           +VRD +RFH FKDG CSC+DYW
Sbjct: 665 IVRDNNRFHRFKDGWCSCKDYW 686



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 198/413 (47%), Gaps = 22/413 (5%)

Query: 60  KQVHAFSIR-HGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           + VHA  +R H  PL +  L  +L+     L  P S A  + S      + TW ++I G 
Sbjct: 27  RAVHAHILRTHDTPLPSF-LCNHLVNMYSKLDLPNS-AQLVLSLTNPRTVVTWTSLISGC 84

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
             +     A+  +S M    + P+  T+P + KA + L     G+Q H++A++ G    V
Sbjct: 85  VHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDV 144

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           FV  S   MY+  G   +A  +F+ M  R+L  WN+ ++    +G+  +A+  F++    
Sbjct: 145 FVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCV 204

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
             EP+  T  +  +ACA++ +L LGR+ H ++ +    ++V+V N L+DFY KCG I+++
Sbjct: 205 DGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSS 264

Query: 299 QRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALELF----KEMEIGGFVPGEVTFVGVL 352
           + VF  +   +RN VSW +L+  L  N   + A  +F    KE+E     P +     VL
Sbjct: 265 ELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEVE-----PTDFMISSVL 319

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            AC+  G ++ G S    +  +  +   I     +VDL G+ G ++ A +  + M    N
Sbjct: 320 SACAELGGLELGRSVHA-LALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREM-PERN 377

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG---DYVLLSNLYAYEQR 462
            V W  ++G    + H    ++A S   ++     G    YV L ++ +   R
Sbjct: 378 LVTWNAMIGG---YAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSR 427


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 344/581 (59%), Gaps = 15/581 (2%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSY 95
            S++R C +L      + +  +Q+H   I+ G  LN    +  +  Y  Y  ++L+     
Sbjct: 468  SILRTCTSL-----GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL---- 518

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
               I   + + ++ +W  MI GY +      A++L+ +M   GI+ D   +   + A + 
Sbjct: 519  --RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 156  LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            +  +R G+Q H+ +   GF + + + N+L+ +YA  G +++A   FE + +++ ++WNS+
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 216  INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            ++G A +G   EAL +F  M     E + +T  S  SA A L  +  G++ H+ V K G 
Sbjct: 637  VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 276  SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                 V+N+L+  Y+K G I  A R F +M +RN +SW+ ++ G + +G G EAL LF+E
Sbjct: 697  DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 336  MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
            M++ G +P  VTFVGVL ACSH G+V EG  YF+ M   + ++PK EH+ C+VDLLGRAG
Sbjct: 757  MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 396  LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             + +A EYI+ M +P +A+IWRTLL AC IH +  I E A   LL+LEP+ S  YVL+SN
Sbjct: 817  QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 456  LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            +YA  ++W++    R+ M    VKK PG S +E+ N V  F+ GD+ HP T +I+  +  
Sbjct: 877  IYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 516  ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
            + ++    GYV  + ++  + E+ +K+     HSEK+AIAF L++     P+RV+KNLRV
Sbjct: 937  LNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRV 996

Query: 576  CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH  IK +SK+ +R I+VRD  RFHHF  G CSC+D+W
Sbjct: 997  CNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 198/393 (50%), Gaps = 19/393 (4%)

Query: 45  CIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           CIT   LL  CAS  + HK  Q+H+ +I+ G+  +    G  L   + S    +  AH  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL--DLYSKCADVETAHKF 419

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F   +  NI  WN M+  Y +  N   + E++ +M + G+ P+  TYP +L+  + L  +
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +GEQ H+  I+ GF+  V+V + L+ MYA +G +  A ++   + E D+V+W ++I G+
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             +   +EAL LF EM   G++ D     S  SACA + AL  G++ H   +  G   ++
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF-----K 334
           ++NNAL+  Y++CG I  A   F ++  +N +SW++LV GLA +G+ +EAL++F      
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           E E+  F  G         A      + +G      M  + G   + E    ++ L  ++
Sbjct: 660 EAEVNMFTYGSAISAAASLA-----NIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G +  A+    +M    N + W  ++   + HG
Sbjct: 714 GSISDAWREFNDM-SERNVISWNAMITGYSQHG 745



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +KQVH+ +  +G   ++  L   L+  + S +  +  A  +F+ +   +I TW  MI G 
Sbjct: 179 VKQVHSRTFYYG--FDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +++     A+ L+  MH S I P  +    +L A +K+    +GEQ H + I+ GF S  
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V N LV +Y+    +  A ++F  M+ RD V++NS+I+G    G  + AL LF +M  +
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD 356

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            ++PD  T+ SL SACA +GAL  G + H++  K G+S ++ +  +LLD YSKC  +  A
Sbjct: 357 CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETA 416

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            + F      N V W+ ++V         ++ E+F++M++ G +P + T+  +L  C+  
Sbjct: 417 HKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 359 G 359
           G
Sbjct: 477 G 477



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 170/346 (49%), Gaps = 2/346 (0%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           + A+ S S  +  A  IFS +   +  ++N++I G  +      A+EL++KM    +KPD
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   LL A + +  +  G Q HS AI+ G  + + ++ SL+ +Y+    V+ A K F 
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL 421

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                ++V WN ++  +      +++  +FR+M  EG+ P+ +T  S+   C  LGAL L
Sbjct: 422 TTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYL 481

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G + HT+V K G   NV V + L+D Y+K G +  A R+ R + + + VSW+ ++ G   
Sbjct: 482 GEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +    EAL+LF+EME  G     + F   + AC+    + +G           G    + 
Sbjct: 542 HDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLS 600

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
               ++ L  R G +++AY   +  +   N + W +L+      G+
Sbjct: 601 INNALISLYARCGRIQEAYLAFEK-IGDKNNISWNSLVSGLAQSGY 645



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 153/364 (42%), Gaps = 56/364 (15%)

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           ++L + M   G++ +   Y +LL+       +    + H    ++GF+    + +SLV  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           Y   G    A KVF+  S R + +WN +I+ F +     +   LFR M +EG+ P+GYT 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 248 VSLFSACAELGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
             +  AC   G +A    ++ H+  +  G   +  V N L+D YSK G I +A++VF  +
Sbjct: 163 AGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS--------- 356
             ++ V+W  ++ GL+ NG  +EA+ LF +M      P       VL A +         
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 357 --HCGMVDEGF------------------------SYFKRMKDEYGIMPKIEHFGCMVDL 390
             HC ++  GF                          F  M    G+      +  ++  
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV-----SYNSLISG 336

Query: 391 LGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACT----------IHGHSAIAEIARS 437
           L + G   +A E    M    + P+ +   +LL AC           +H H+  A ++  
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 438 TLLQ 441
            +L+
Sbjct: 397 IILE 400


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 324/575 (56%), Gaps = 10/575 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFS 101
           ++L+ CA S   +  +Q+H F ++      N D   Y+ + +V +      +  A  +F 
Sbjct: 308 SILKACAGSGAFNLGRQIHGFMVK-----ANADSDNYIAFGLVDMYAKHGLLDDAKKVFD 362

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++  WN +I G +  A    A+ L+ +M   G   +  T   +LK+ + L  +  
Sbjct: 363 WIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISD 422

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H++A + GF S   V N L+  Y     +  A +VFE     D++A+ S+I   + 
Sbjct: 423 TRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQ 482

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                +A+ LF EM  +G++PD + + SL +ACA L A   G++ H ++ K     +V  
Sbjct: 483 CDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFA 542

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL+  Y+KCG I  A   F  + ++  VSWS ++ GLA +G GK AL++F  M     
Sbjct: 543 GNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHI 602

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +T   VL AC+H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A 
Sbjct: 603 SPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAM 662

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E + +M    NA +W  LL A  +H    +  +A   L  LEP+ SG +VLL+N YA   
Sbjct: 663 ELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAG 722

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W +V +VR+ M   +VKK P  S VEL ++V  F +GD+SHP+  +I+A L E+   + 
Sbjct: 723 MWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMT 782

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GYVP  E    D+++ EKE  LS+HSE++A+AF L++T  G P+RV KNLR+C DCH 
Sbjct: 783 KAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHA 842

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A K IS + SREI++RD +RFHHF+DG CSCRDYW
Sbjct: 843 AFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 166/333 (49%), Gaps = 7/333 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + DP   +W++++  Y+ +A P  A+  +  M    ++ +    P +LK    
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP- 114

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNS 214
             D   G Q H++A+  G    +FV N+LV MY  FG V +A  VF E   ER+ V+WN 
Sbjct: 115 --DAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNG 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++ +  N + + A+ +F EM   GV+P+ +    + +AC     L  GR+ H  V + G
Sbjct: 173 LMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTG 232

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V   NAL+D YSK G I  A  VF ++ + + VSW+  + G  ++G  + ALEL  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M+  G VP   T   +L AC+  G  + G      M            FG +VD+  + 
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKH 351

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           GL+  A + + + +   + V+W  L+  C+ HG
Sbjct: 352 GLLDDA-KKVFDWIPQRDLVLWNALISGCS-HG 382



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 16/394 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           ++VHA  IR G      D   +   A+V +   +     A  +F  V + ++ +WN  I 
Sbjct: 222 RKVHAMVIRTGY-----DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFIS 276

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G     +   A+EL  +M  SG+ P+  T   +LKA +      +G Q H   ++   +S
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS 336

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             ++   LV MYA  G + DA KVF+ + +RDLV WN++I+G +   +  EAL+LF  M 
Sbjct: 337 DNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMR 396

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EG + +  T+ ++  + A L A++  R+ H    K+G   + +V N L+D Y KC  + 
Sbjct: 397 KEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLN 456

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A RVF +    + +++++++  L+    G++A++LF EM   G  P       +L AC+
Sbjct: 457 YAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACA 516

Query: 357 HCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
                ++G      + K ++  M  +     +V    + G ++ A        +P   V+
Sbjct: 517 SLSAYEQGKQVHAHLIKRQF--MSDVFAGNALVYTYAKCGSIEDADLAFSG--LPEKGVV 572

Query: 416 -WRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
            W  ++G    HGH   A+    R     + P H
Sbjct: 573 SWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNH 606



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 133/246 (54%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  +WN ++  Y ++     AV+++ +M   G++P+   +  ++ A +   D+  G + H
Sbjct: 166 NTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVH 225

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           ++ IR G++  VF  N+LV MY+  G ++ A  VF  + E D+V+WN+ I+G   +G   
Sbjct: 226 AMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQ 285

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL L  +M S G+ P+ +T+ S+  ACA  GA  LGR+ H ++ K     +  +   L+
Sbjct: 286 HALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLV 345

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D Y+K G++  A++VF  + +R+ V W+ L+ G +      EAL LF  M   GF     
Sbjct: 346 DMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRT 405

Query: 347 TFVGVL 352
           T   VL
Sbjct: 406 TLAAVL 411



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL   +    +  G   H+  +++G       +N L+  Y+       A +VF+ + +  
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPC 67

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            V+W+S++  +++N  P +AL  FR M S  V  + + +  +     + G    G + H 
Sbjct: 68  HVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHA 124

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGK 327
                GL  ++ V NAL+  Y   G +  A+ VF E   +RN VSW+ L+     N    
Sbjct: 125 LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCS 184

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
            A+++F EM  GG  P E  F  V+ AC+    ++ G      M    G    +     +
Sbjct: 185 HAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAG-RKVHAMVIRTGYDKDVFTANAL 243

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           VD+  + G ++ A   +   +   + V W   +  C +HGH    + A   LLQ++
Sbjct: 244 VDMYSKLGDIRMA-AVVFGKVPETDVVSWNAFISGCVLHGHD---QHALELLLQMK 295



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 8/178 (4%)

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+  L +  A   +L  G   H ++ K GL       N LL FYSKC +  +A+RVF E+
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
                VSWS+LV   + N   ++AL  F+ M        E     VL         D GF
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP-----DAGF 118

Query: 366 -SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            +    +    G+   I     +V + G  G V +A           N V W  L+ A
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 342/591 (57%), Gaps = 18/591 (3%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSY 95
           +++  R   +LL   AS +H L Q HA  +  G    +P L    +   A+      + +
Sbjct: 3   VSAAARHLESLLPRLASLRHYL-QFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPH 61

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAI 153
           A  +   +  P     N  +RG A S +P  ++ L +   +  +  +PD  +  F LKA 
Sbjct: 62  ALLLLRSLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKAS 121

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++ +D     Q H++ +R G  + V +  +L+  YA  G +  A KVF+ M+ RD+  WN
Sbjct: 122 ARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWN 181

Query: 214 SVINGFASNGKPNEALTLFREMASE------GVEPDGYTMVSLFSACAELGALALGRRAH 267
           S++ G A   +PN AL LF  +A+         EP+  T+V+  SACA++G L  G   H
Sbjct: 182 SLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVH 241

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA--VSWSTLVVGLAVNGF 325
            +  + GL  NV V N+L+D YSKCG +  A  VF  ++  +   VS++  +   +++G 
Sbjct: 242 EFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGH 301

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G +AL LF EM      P  VT++ VL  C+H G+VD+G   F  M+    + P ++H+G
Sbjct: 302 GGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYG 356

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            +VDLLGRAG + +AY+ + +M  P + V+W+TLLGA  +HG   +AE+A + L +L   
Sbjct: 357 TIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSN 416

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
             GDYVLLSN+YA + RW++V  VR TM    V+K PG S  E+   + +F  GD+ HP+
Sbjct: 417 VDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPR 476

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            +EI+  L +I  ++   GY P T NV  DI EEEK+ AL YHSEK+AIAF L+ T PG 
Sbjct: 477 WQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGE 536

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +RV+KNLR+C DCH+  KLISK Y R IV+RDR+RFH F+DG CSCRDYW
Sbjct: 537 TLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 331/577 (57%), Gaps = 12/577 (2%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           + LL  C        L+ +H +S+RH       +NN  +  Y      +    + +A ++
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAY------AKCGSLVFAEHV 473

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   ++ +WN +I G+A++ +P+ A++ Y +M   GI PD  +   LL A  +L  +
Sbjct: 474 FFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLL 533

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           + G++ H   +RNG E   FV  SL+ +Y            FE M +++ V WN++++G+
Sbjct: 534 QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGY 593

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           + N  PNEAL+LFR+M S+G+EPD   + S+  AC++L AL LG+  H +  K  L ++ 
Sbjct: 594 SQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDN 653

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  +L+D Y+K G +  +QR+F  +  +   SW+ ++ G  V+G G +A+ELF++M+  
Sbjct: 654 FVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRS 713

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
              P   TF+GVL AC H G+V EG +Y  +M+  Y + P++EH+ C++D+LGRAG + +
Sbjct: 714 DKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNE 773

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A  +I  M   P+A IW +LL +   +    + E     LL LE   +  Y+LLSNLYA 
Sbjct: 774 ALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYAT 833

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W  V+ VR+ M    ++K  G S +EL  +V+ F  G+ S+P ++EI  M   + K+
Sbjct: 834 AGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQ 893

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GY P    V  ++EE EK   L  HSEK+AI F  +NT  GT +R+ KNLR+C DC
Sbjct: 894 IVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDC 953

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K ISK   REIV+RD  RFHHFK G CSC DYW
Sbjct: 954 HNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 150/262 (57%), Gaps = 5/262 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLA 157
           +F  + + N+F WN ++ GY  +     A+  + ++  V+  +PD  T+P L+KA +   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           D+ +G+  H +A++ G    +FV N+++ +Y   G + +A ++F+ M E++L++WNS+I 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 218 GFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           GF+ NG   EA   FR +  + +G+ PD  TMV+L   C+  G + +G   H    K+GL
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V NAL+D YSKCG +  A  +FR++  ++ VSW++++   +  GF  E  +L ++
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 336 --MEIGGFVPGEVTFVGVLYAC 355
             ME       EVT + +L AC
Sbjct: 405 MWMEEELMEVNEVTILNLLPAC 426



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           H  K VH  +++ G+ ++   +G  +I       F +  A  +F  + + N+ +WN++IR
Sbjct: 227 HLGKSVHGMAVKMGLIMD-LFVGNAMIALYGKCGF-LDEAVELFDKMPEQNLISWNSLIR 284

Query: 117 GYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           G++E+   L A   +  +  SG  + PD  T   LL   S   +V +G   H +A++ G 
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
              + V N+L+ MY+  G + +A  +F  +  + +V+WNS+I  ++  G   E   L R+
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 235 M--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           M    E +E +  T+++L  AC E   L   R  H Y  +        +NNA +  Y+KC
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G ++ A+ VF  M  ++  SW+ ++ G A NG   +AL+ + EM   G +P + + V +L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 353 YACSHCGMVDEG 364
            AC   G++  G
Sbjct: 525 LACGRLGLLQYG 536



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 164/337 (48%), Gaps = 28/337 (8%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS-LVHMYAAFGHVKDACKVFELMSER 207
           LL+   +  +V +G +   +   +   S  FV N+ L+ MY+  G+  ++  VF+ +  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRA 266
           +L  WN++++G+  N   +EA+  F E+ S    +PD +T   L  AC     + LG+  
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H    K+GL  ++ V NA++  Y KCG +  A  +F +M ++N +SW++L+ G + NGF 
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 327 KEALELFKE-MEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            EA   F+  +E G G +P   T V +L  CS  G VD G      M  + G++ ++   
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVC 351

Query: 385 GCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHG-------------- 427
             ++D+  + G + +A   +  I+N     + V W +++GA +  G              
Sbjct: 352 NALIDMYSKCGCLSEAAILFRKIEN----KSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLS--NLYAYEQR 462
              + E+   T+L L P    +  LLS   L+ Y  R
Sbjct: 408 EEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR 444


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 333/576 (57%), Gaps = 5/576 (0%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFSH 102
           +T L +  +  +     H   +R  +   + +L  ++  A++++        N   +F  
Sbjct: 112 VTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGR 171

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++  N+ TW+ +I  +A+  +   A+  +  M   GI P+  T+  LL   +  + +   
Sbjct: 172 MKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEEL 231

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYA--AFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            + H +   +G +    + N+LV++Y     G +  A  + + M E+ + AWN +ING+ 
Sbjct: 232 SRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYT 291

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            +G+  EAL  ++ +  E +  D  T +S+ +AC    +LA G+  H+   + GL  +V 
Sbjct: 292 LHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVI 351

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V NAL + YSKCG +  A+R+F  M  R+AVSW+ ++   A +G  +E L+L ++ME  G
Sbjct: 352 VKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 411

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
                +TFV VL +CSH G++ EG  YF  +  + GI  K EH+GC+VDLLGRAG +++A
Sbjct: 412 VKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEA 471

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            +YI  M   P  V W +LLGAC +H      ++A   LL+L+P +S   V+LSN+Y+  
Sbjct: 472 EKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSER 531

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
             W N  ++RR M   RVKK PG S +++ N+V EF + D SHP+  EI+  + E+   +
Sbjct: 532 GDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAM 591

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           +  GYVP T+ V  D++EE+KE  L+YHSEK+AIAF L++T   + + + KNLRVC DCH
Sbjct: 592 REAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCH 651

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A K ISK+  REIVVRD  RFHHF+DG CSC+DYW
Sbjct: 652 TATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 168/339 (49%), Gaps = 4/339 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   ++ TWN+MI  Y+ S     A  ++ +M   G + D  T+  +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                +++ G+          FE  +FV  +L+ MYA     ++A +VF  M +++L+ W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           +++I  FA +G   EAL  FR M  EG+ P+  T +SL +       L    R H  + +
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 240

Query: 273 VGLSDNVNVNNALLDFYSKC--GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            GL D   ++NAL++ Y +C  G +  A+ + +EM ++   +W+ L+ G  ++G  +EAL
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           E ++ +++      +VTF+ VL AC+    + EG         E G+   +     + ++
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNM 359

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             + G ++ A     +M +  +AV W  +L A   HG S
Sbjct: 360 YSKCGSMENARRIFDSMPI-RSAVSWNGMLQAYAQHGES 397



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 151/313 (48%), Gaps = 7/313 (2%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFG 192
           M + G+K +  T+  +L ++     +R G+  HS  +R    SL VFV  +LV+ Y   G
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS-CVRESEHSLDVFVNTALVNTYTKCG 59

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
            + DA KVF+ M  R +  WNS+I+ ++ + +  EA  +F+ M  EG   D  T +S+  
Sbjct: 60  SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILD 119

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           AC     L  G+     + +     ++ V  AL+  Y++C     A +VF  M+++N ++
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           WS ++   A +G   EAL  F+ M+  G +P  VTF+ +L   +    ++E  S    + 
Sbjct: 180 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLI 238

Query: 373 DEYGIMPKIEHFGCMVDLLGR--AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
            E+G+         +V++ GR   G +  A   +Q M        W  L+   T+HG S 
Sbjct: 239 TEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEM-DEQQITAWNVLINGYTLHGRSR 297

Query: 431 IAEIARSTLLQLE 443
            A +     LQLE
Sbjct: 298 EA-LETYQRLQLE 309


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/511 (41%), Positives = 311/511 (60%), Gaps = 5/511 (0%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE--QTHSV 168
           +NTMIR  + S +P   + LY  M   GI  D  +  F++K+  +L  + +    Q H  
Sbjct: 5   YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCN 64

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
             + G +    +  +++ +Y+      DACKVF+ M  RD VAWN +I+    N +  +A
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 229 LTLFR--EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           L+LF   + +S   EPD  T + L  ACA L AL  G R H Y+ + G    +N++NAL+
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALI 184

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             YS+CG +  A  VF+    +N VSWS ++ GLA+NG+G+EA+E F+EM   G  P + 
Sbjct: 185 SMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQ 244

Query: 347 TFVGVLYACSHCGMVDEGF-SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           T  GVL ACS+ GMVDEG  S+F RM  E+G+ P + H+GCMVDLLG AGL+ +A + I 
Sbjct: 245 TLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIM 304

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
           +M+  P++  WRTLLGAC IHGH  + E     L++L+ + +GD+VLL N+Y+    W  
Sbjct: 305 SMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWEK 364

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
           V EVR+ M  + ++ TPG S +EL   V EF + D SH +  EI+  L EI  +L++ GY
Sbjct: 365 VAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAGY 424

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           V    +    ++++EK   LS+HSEK+AIAF ++ T PGT +RV  NLR+C DC   +K 
Sbjct: 425 VVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLKH 484

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            S VY+ ++++RD +RFHHF+ G CSC +YW
Sbjct: 485 FSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 45  CITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           C+ LLQ CA   +    +++H + + HG      +L   LI ++ S    +  A  +F  
Sbjct: 145 CLLLLQACAHLYALEFGERIHGYMMEHGYG-GALNLSNALI-SMYSRCGCLDKAXEVFKG 202

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
             + N+ +W+ MI G A +     A+E + +M   GI+PD  T   +L A S
Sbjct: 203 TGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACS 254


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 344/581 (59%), Gaps = 15/581 (2%)

Query: 40   SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSY 95
            S++R C +L      + +  +Q+H   I+ G  LN    +  +  Y  Y  ++L+     
Sbjct: 468  SILRTCTSL-----GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL---- 518

Query: 96   AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
               I   + + ++ +W  MI GY +      A++L+ +M   GI+ D   +   + A + 
Sbjct: 519  --RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 156  LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            +  +R G+Q H+ +   GF + + + N+L+ +YA  G +++A   FE + +++ ++WNS+
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 216  INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            ++G A +G   EAL +F  M     E + +T  S  SA A L  +  G++ H+ V K G 
Sbjct: 637  VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 276  SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                 V+N+L+  Y+K G I  A R F +M +RN +SW+ ++ G + +G G EAL LF+E
Sbjct: 697  DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 336  MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
            M++ G +P  VTFVGVL ACSH G+V EG  YF+ M   + ++PK EH+ C+VDLLGRAG
Sbjct: 757  MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 396  LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
             + +A EYI+ M +P +A+IWRTLL AC IH +  I E A   LL+LEP+ S  YVL+SN
Sbjct: 817  QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 456  LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            +YA  ++W++    R+ M    VKK PG S +E+ N V  F+ GD+ HP T +I+  +  
Sbjct: 877  IYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 516  ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
            + ++    GYV  + ++  + E+ +K+     HSEK+AIAF L++     P+RV+KNLRV
Sbjct: 937  LNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRV 996

Query: 576  CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH  IK +SK+ +R I+VRD  RFHHF  G CSC+D+W
Sbjct: 997  CNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 198/393 (50%), Gaps = 19/393 (4%)

Query: 45  CIT---LLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           CIT   LL  CAS  + HK  Q+H+ +I+ G+  +    G  L   + S    +  AH  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL--DLYSKCADVETAHKF 419

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F   +  NI  WN M+  Y +  N   + E++ +M + G+ P+  TYP +L+  + L  +
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +GEQ H+  I+ GF+  V+V + L+ MYA +G +  A ++   + E D+V+W ++I G+
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             +   +EAL LF EM   G++ D     S  SACA + AL  G++ H   +  G   ++
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF-----K 334
           ++NNAL+  Y++CG I  A   F ++  +N +SW++LV GLA +G+ +EAL++F      
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           E E+  F  G         A      + +G      M  + G   + E    ++ L  ++
Sbjct: 660 EAEVNMFTYGSAISAAASLA-----NIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           G +  A+    +M    N + W  ++   + HG
Sbjct: 714 GSISDAWREFNDM-SERNVISWNAMITGYSQHG 745



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           +KQVH+ +  +G   ++  L   L+  + S +  +  A  +F+ +   +I TW  MI G 
Sbjct: 179 VKQVHSRTFYYG--FDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGL 236

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +++     A+ L+  MH S I P  +    +L A +K+    +GEQ H + I+ GF S  
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +V N LV +Y+    +  A ++F  M+ RD V++NS+I+G    G  + AL LF +M  +
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD 356

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            ++PD  T+ SL SACA +GAL  G + H++  K G+S ++ +  +LLD YSKC  +  A
Sbjct: 357 CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETA 416

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
            + F      N V W+ ++V         ++ E+F++M++ G +P + T+  +L  C+  
Sbjct: 417 HKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 359 G 359
           G
Sbjct: 477 G 477



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 170/346 (49%), Gaps = 2/346 (0%)

Query: 83  IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           + A+ S S  +  A  IFS +   +  ++N++I G  +      A+EL++KM    +KPD
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
             T   LL A + +  +  G Q HS AI+ G  + + ++ SL+ +Y+    V+ A K F 
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL 421

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
                ++V WN ++  +      +++  +FR+M  EG+ P+ +T  S+   C  LGAL L
Sbjct: 422 XTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYL 481

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           G + HT+V K G   NV V + L+D Y+K G +  A R+ R + + + VSW+ ++ G   
Sbjct: 482 GEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQ 541

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +    EAL+LF+EME  G     + F   + AC+    + +G           G    + 
Sbjct: 542 HDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLS 600

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
               ++ L  R G +++AY   +  +   N + W +L+      G+
Sbjct: 601 INNALISLYARCGRIQEAYLAFEK-IGDKNNISWNSLVSGLAQSGY 645



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 153/364 (42%), Gaps = 56/364 (15%)

Query: 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           ++L + M   G++ +   Y +LL+       +    + H    ++GF+    + +SLV  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           Y   G    A KVF+  S R + +WN +I+ F +     +   LFR M +EG+ P+GYT 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 248 VSLFSACAELGALALG--RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
             +  AC   G +A    ++ H+  +  G   +  V N L+D YSK G I +A++VF  +
Sbjct: 163 AGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS--------- 356
             ++ V+W  ++ GL+ NG  +EA+ LF +M      P       VL A +         
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 357 --HCGMVDEGF------------------------SYFKRMKDEYGIMPKIEHFGCMVDL 390
             HC ++  GF                          F  M    G+      +  ++  
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV-----SYNSLISG 336

Query: 391 LGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACT----------IHGHSAIAEIARS 437
           L + G   +A E    M    + P+ +   +LL AC           +H H+  A ++  
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 438 TLLQ 441
            +L+
Sbjct: 397 IILE 400


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 313/520 (60%), Gaps = 1/520 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +W ++I GYA++  P  A+ L   M     KP+  T+  LLKA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            A   +GEQ H++ ++  +   V+V ++L+ MYA  G +  A  VF+ +  ++ V+WN++
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I GFA  G     L +F EM   G E   +T  S+FSA A +GAL  G+  H ++ K G 
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             +  V N +LD Y+K G +I A++VF  + K++ V+W++++   A  G G+EA+  F+E
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEE 357

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G    ++TF+ +L ACSH G+V EG  YF  MK EY + P+I+H+  +VDLLGRAG
Sbjct: 358 MRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAG 416

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+  A  +I  M M P A +W  LLG+C +H ++ I + A   + +L+P  +G  VLL N
Sbjct: 417 LLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYN 476

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   +W     VR+ M    VKK P  S VE+ N V  F   D +HP++EEI+    E
Sbjct: 477 IYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEE 536

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ +++  GYVP T+ V   ++E+E++  L YHSEKIA+AF L+N   G  +R++KN+R+
Sbjct: 537 ISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRI 596

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           C DCH A + ISKV+ REIVVRD +RFHHF  G CSC DY
Sbjct: 597 CGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  L+ A ++   +      H+    + F   VF+ NSL+H+Y   G V DA +VF+ M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            RD+ +W S+I G+A N  P+EAL L   M     +P+G+T  SL  A     +  +G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H    K    D+V V +ALLD Y++CG +  A  VF ++  +N VSW+ L+ G A  G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G+  L +F EM+  GF     T+  V  A +  G +++G
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  ++  N  +WN +I G+A   +    + ++++M  +G +    TY  +  A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           I+ +  +  G+  H+  I++G     FV N+++ MYA  G + DA KVF+ + ++D+V W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS++  FA  G   EA+T F EM   GV  +  T +S+ +AC+  G +  G++    + +
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQR-VFREMRKRNAVSWSTLV 317
             L   ++    ++D   + G++  A   +F+   K  A  W  L+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 310/526 (58%), Gaps = 5/526 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +++ ++  WNTMI GYA+      A+EL+ +M  +  KP+  T+  LL A
Sbjct: 214 LESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA 273

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVA 211
            + L D+  G   H     +G+ES + + N L++MY      +++A +VFE M  RD++ 
Sbjct: 274 CTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVIT 333

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN +I  +   G+  +AL +F++M  E V P+  T+ ++ SACA LGA   G+  H  + 
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
                 +V + N+L++ Y++CG +     VF  +R ++ VSWSTL+   A +G  +  LE
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F E+   G    +VT V  L ACSH GM+ EG   F  M  ++G+ P   HF CMVDLL
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            RAG ++ A   I +M   P+AV W +LL  C +H  +  A      L +LE +     V
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTV 573

Query: 452 -LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
            LLSN+YA   RW    +VR+T  +   +K PG S +E+ + V EF  GD+SHP+ E I 
Sbjct: 574 TLLSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIA 630

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
           A +  ++K++K  GYVP    V  +++EEEKE  L YHSEK+AIA+ L++T PGTP+ +V
Sbjct: 631 AEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIV 690

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR C DCH A K IS++  R+IVVRD +RFHHF++G CSC+DYW
Sbjct: 691 KNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 210/429 (48%), Gaps = 30/429 (6%)

Query: 46  ITLLQVCASSKHKLKQ---VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           +  + VC+SSK  LKQ   +HA  +   +   +  LG  LI  + +    +  A   F  
Sbjct: 62  VVAIGVCSSSK-DLKQGQLLHAMILETRLLEFDIILGTALI-TMYARCRDLELARKTFDE 119

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKM---HVSGIKPDTHTYPFLLKAISKLADV 159
           +    + TWN +I GY+ + +   A+++Y  M      G+KPD  T+   L A + + D+
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G +  +  + +G+ S   VQN+L++MY+  G ++ A KVF+ +  RD++AWN++I+G+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G   +AL LF+ M     +P+  T + L +AC  L  L  GR  H  V + G   ++
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 280 NVNNALLDFYSKCGIII-AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            + N LL+ Y+KC   +  A++VF  MR R+ ++W+ L+V     G  K+AL++FK+M++
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---------EYGIMPKIEHFGCMVD 389
               P E+T   VL AC+  G   +G +    +           E  +M      G + D
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            +G    ++             + V W TL+ A   HGHS         LLQ E   + D
Sbjct: 420 TVGVFAAIRD-----------KSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ-EGLAADD 467

Query: 450 YVLLSNLYA 458
             ++S L A
Sbjct: 468 VTMVSTLSA 476



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 157/280 (56%), Gaps = 4/280 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  ++ PN  +W  ++  +A + +   A+  Y +M + G++PD   +   +   S   D
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73

Query: 159 VRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           ++ G+  H++ +     E  + +  +L+ MYA    ++ A K F+ M ++ LV WN++I 
Sbjct: 74  LKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 218 GFASNGKPNEALTLFREMAS---EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           G++ NG    AL ++++M S   EG++PD  T  S   AC  +G ++ GR         G
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASG 193

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            + +  V NAL++ YSKCG + +A++VF  ++ R+ ++W+T++ G A  G   +ALELF+
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            M      P  VTF+G+L AC++   +++G +  ++++++
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 5/288 (1%)

Query: 46  ITLLQVCASSKHKLKQVHAF--SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I LL  C ++   L+Q  A    +R     ++  +G  L+      S  +  A  +F  +
Sbjct: 268 IGLLTAC-TNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERM 326

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +  ++ TWN +I  Y +      A++++ +M +  + P+  T   +L A + L   R G+
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H++      ++ V ++NSL++MY   G + D   VF  + ++ LV+W+++I  +A +G
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-TYVWKVGLSDNVNVN 282
                L  F E+  EG+  D  TMVS  SAC+  G L  G +   + V   GL+ +    
Sbjct: 447 HSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHF 506

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEA 329
             ++D  S+ G + AA+ +  +M    +AV+W++L+ G  ++   K A
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 119/280 (42%), Gaps = 47/280 (16%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G V DA  VF  +   + V+W  ++  FA NG   EAL  +R M  EG+ PDG  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREM 305
            V     C+    L  G+  H  + +  L + ++ +  AL+  Y++C  +  A++ F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEM---EIGGFVPGEVTFVGVLYAC------- 355
            K+  V+W+ L+ G + NG  + AL+++++M      G  P  +TF   LYAC       
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 356 ----------------------------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
                                       S CG ++     F R+K+   I      +  M
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA-----WNTM 235

Query: 388 VDLLGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACT 424
           +    + G   QA E  Q M      PN V +  LL ACT
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/547 (38%), Positives = 317/547 (57%), Gaps = 35/547 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +PNI +WN ++ G+  S     AV ++ KMH  G  PD  T   +L ++    ++ MG Q
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF---ELMS---------------- 205
            H   I+ G      V ++++ MY   GHV    K+F   E+M                 
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 206 ----------------ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                           E ++V+W S+I G A NGK  EAL LFREM   GV+P+  T+ S
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  AC  + AL  GR  H +  +V L D+V+V +AL+D Y+KCG I  +Q VF  M  +N
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN 453

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            V W++L+ G +++G  KE + +F+ +      P  ++F  +L AC   G+ DEG+ YF 
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFN 513

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M +EYGI P++EH+ CMV+LLGRAG +++AY+ I+ +   P++ +W  LL +C +  + 
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +AEIA   L  LEP++ G YVL+SN+YA +  W  V  +R  M    +KK PG S +++
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
            N+V+     D+SHPQ ++I   + EI+++++  G+ P  +    D+EE+E+E  L  HS
Sbjct: 634 KNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHS 693

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+ F L+NT  GTP++V+KNLR+C DCH  IK IS    REI +RD +RFHHFKDG 
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753

Query: 610 CSCRDYW 616
           CSC D+W
Sbjct: 754 CSCGDFW 760



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 187/407 (45%), Gaps = 84/407 (20%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           I   + DP +++++++I    ++     ++ ++S+M   G+ PDTH  P L K  ++L+ 
Sbjct: 72  ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSA 131

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---------- 208
            + G+Q H VA  +G +   FVQ SL HMY   G + DA KVF+ MSE+D          
Sbjct: 132 FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCG 191

Query: 209 -------------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
                                    +V+WN +++GF  +G   EA+ +F++M   G  PD
Sbjct: 192 YARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPD 251

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
             T+ S+  +  +   L +GR+ H YV K GL  +  V +A+LD Y K G +    ++F 
Sbjct: 252 QVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFD 311

Query: 304 EMR-----------------------------------KRNAVSWSTLVVGLAVNGFGKE 328
           E                                     + N VSW++++ G A NG   E
Sbjct: 312 EFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIE 371

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHC-----GMVDEGFSYFKRMKDEYGIMPKIEH 383
           ALELF+EM++ G  P  VT   +L AC +      G    GF+    + D+        H
Sbjct: 372 ALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDV-------H 424

Query: 384 FG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            G  ++D+  + G +K + + + NM+   N V W +L+   ++HG +
Sbjct: 425 VGSALIDMYAKCGRIKMS-QIVFNMMPTKNLVCWNSLMNGYSMHGKA 470


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/509 (40%), Positives = 310/509 (60%), Gaps = 8/509 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +N ++ GY  ++    AV L+ +M+  G+  ++ T   L+ A     ++ +G   H   +
Sbjct: 120 YNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 179

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           + GF+S V V N  + MY   G V  A K+F+ M  + L++WN++++G+A NG     L 
Sbjct: 180 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 239

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+R M   GV PD  T+V + S+CA LGA ++G      +   G + N  +NNAL++ Y+
Sbjct: 240 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYA 299

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  AQ VF  M +R  VSW+ ++ G  ++G G+ A++LFKEM   G  P    FV 
Sbjct: 300 RCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 359

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL ACSH G+ D+G  YFK MK  Y + P  EH+ CMVDLLGRAG +K+A   I++M + 
Sbjct: 360 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK 419

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           P+  +W  LLGAC IH +  +AE+A   +++LEP++ G YVLLSN+Y+       V  +R
Sbjct: 420 PDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIR 479

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M ++++KK PG S VEL  RV  F +GDR+H Q++EI+ +L E+   +  E   P  +
Sbjct: 480 IMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD 539

Query: 531 NVFADIEEEEKEDALS---YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
           N      EE  +D  +    HSEK+A+AF L+NT  G  V ++KNLR+C DCHL  K++S
Sbjct: 540 N-----REESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVS 594

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K+  R++ VRD +RFHHF++G CSC+DYW
Sbjct: 595 KIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 178/353 (50%), Gaps = 16/353 (4%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WNT +R  A+    L A+ LY +M   G +P+  T+PF LK+ + L+   +G Q H    
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEA 228
           + G     FVQ  L+ MY     V +A KVFE    S +  V +N++++G+ SN K +EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LFR+M  EGV  +  T++ L  AC     L LG   H    K G   +V+V N  +  
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y KCG +  AQ++F EM  +  +SW+ +V G A NG     LEL++ M++ G  P  VT 
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256

Query: 349 VGVLYACSHCGMVDEGFSY-FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           VGVL +C++ G    G    FK     +   P + +   ++++  R G + +A       
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDG- 313

Query: 408 LMPPNAVI-WRTLLGACTIHGHSAIA-----EIARSTLLQLEPKHSGDYVLLS 454
            MP   ++ W  ++G   +HGH  IA     E+ RS    +EP  +    +LS
Sbjct: 314 -MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG---IEPDGTAFVCVLS 362



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 2/227 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA  +F  +    + +WN M+ GYA++      +ELY  M ++G+ PD  T   +L +
Sbjct: 203 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 262

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L    +G +       +GF S  F+ N+L++MYA  G++  A  VF+ M ER LV+W
Sbjct: 263 CANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW 322

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G+  +G    A+ LF+EM   G+EPDG   V + SAC+  G    G      + +
Sbjct: 323 TAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR 382

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
              L       + ++D   + G +  AQ +   M  K +   W  L+
Sbjct: 383 NYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 429


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 311/526 (59%), Gaps = 32/526 (6%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W ++I  Y+ +     AV  +  M   GI PD  T   +L A +KL D+ +G   H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 167 SVAIRNGF---ESLVFVQ-----------------------------NSLVHMYAAFGHV 194
            +    G    E+LV                                N+++  Y   GHV
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHV 322

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  +F+ M  RD++ +NS++ G+  +G+  EAL LF  M    +  D +T+V+L +AC
Sbjct: 323 DVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTAC 382

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           A LGAL  GR  H  + +  +  ++ +  ALLD Y KCG +  A  VF+ M KR+  +W+
Sbjct: 383 ASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWT 442

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++ GLA NG GK ALE F +M   GF P  V+++ VL ACSH  +++EG  YF  M+  
Sbjct: 443 AMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL 502

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           Y I P+IEH+GCM+DLLGR+GL+ +A + ++ M + PNAVIW ++L AC +H H  +A+ 
Sbjct: 503 YNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQC 562

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   LL+LEP   G YV L N+Y   ++W N  ++R  M + +VKKT G+S + +  +V 
Sbjct: 563 AAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVH 622

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           +F + D+SHP+  EI AML EI+ +LK  GY P T  +  D++EEEKE AL  HSEK+AI
Sbjct: 623 KFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAI 682

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           AF L+N AP  PV + KNLRVC DCH AIKLIS++++REI+VRDRS
Sbjct: 683 AFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 170/353 (48%), Gaps = 46/353 (13%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP----MSYAHNIFSHVQDPNIFTWNTMIR 116
           ++HA     G  L +P   ++L+ ++V+   P    + YA ++F  +  P+ F ++T +R
Sbjct: 17  ELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALR 75

Query: 117 GYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA---DVRMGEQTHSVAIRN 172
             + + ++P     L+ +M  +G++PD  T+ FL K  S  +    + +    H+  +R 
Sbjct: 76  ACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRT 135

Query: 173 GFESLV-FVQNSLVHMYAAFG------------HVKDA----------------CKVFEL 203
              S   FV NSL+HMY   G            HVKDA                C    L
Sbjct: 136 MLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLL 195

Query: 204 MSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           +S+   RD+++W S+I  ++   +  EA+  F+ M S G+ PD  T++++ SACA+L  L
Sbjct: 196 LSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDL 255

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVG 319
            LGR  H  V + G+  + N+  AL+D Y+KCG    AQ+VF  + R     SW+ ++ G
Sbjct: 256 ELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
              +G    A  LF EME+       +TF  ++    H G + E    F  M+
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSMR 364



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  ++  +I T+N+M+ GY  S     A+ L+  M    ++ D  T   LL A + 
Sbjct: 325 ARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACAS 384

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  ++ G   H+   +   E+ +++  +L+ MY   G V +A  VF+ M +RD+  W ++
Sbjct: 385 LGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAM 444

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NG    AL  F +M  +G +P+  + +++ +AC+    L  GR    Y  ++ +
Sbjct: 445 IAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGR---LYFDEMRI 501

Query: 276 SDNVNVN----NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN 323
             N++        ++D   + G++  A  + + M  + NAV W++++    V+
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 41/287 (14%)

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
           H++ A  +F+ M     +   ++     +   P+    LFR M   GV PDG+T   LF 
Sbjct: 52  HLRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK 111

Query: 253 ACAELG---ALALGRRAHTYVWKVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKR 308
             +      +L L    H    +  L      V+N+L+  Y + G+   A+R F E+  +
Sbjct: 112 CSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVK 171

Query: 309 NAVSWSTLVVGLAVNGF-------------------------------GKEALELFKEME 337
           +AV+W+ L+ GLA  G                                 +EA+  FK M 
Sbjct: 172 DAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTML 231

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGRAGL 396
             G  P EVT + VL AC+    ++ G S    + +E G MP  E+    ++D+  + G 
Sbjct: 232 SHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVEEKG-MPTSENLVVALIDMYAKCGD 289

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
              A +    +   P    W  ++     HGH    ++ARS   ++E
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH---VDVARSLFDEME 333


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 331/577 (57%), Gaps = 12/577 (2%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           + LL  C        L+ +H +S+RH       +NN  +  Y      +    + +A ++
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAY------AKCGSLVFAEHV 473

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  +   ++ +WN +I G+A++ +P+ A++ Y +M   GI PD  +   LL A  +L  +
Sbjct: 474 FFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLL 533

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
           + G++ H   +RNG E   FV  SL+ +Y            FE M +++ V WN++++G+
Sbjct: 534 QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGY 593

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           + N  PNEAL+LFR+M S+G+EPD   + S+  AC++L AL LG+  H +  K  L ++ 
Sbjct: 594 SQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDN 653

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V  +L+D Y+K G +  +QR+F  +  +   SW+ ++ G  V+G G +A+ELF++M+  
Sbjct: 654 FVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRS 713

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
              P   TF+GVL AC H G+V EG +Y  +M+  Y + P++EH+ C++D+LGRAG + +
Sbjct: 714 DKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNE 773

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A  +I  M   P+A IW +LL +   +    + E     LL LE   +  Y+LLSNLYA 
Sbjct: 774 ALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYAT 833

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W  V+ VR+ M    ++K  G S +EL  +V+ F  G+ S+P ++EI  M   + K+
Sbjct: 834 AGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQ 893

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GY P    V  ++EE EK   L  HSEK+AI F  +NT  GT +R+ KNLR+C DC
Sbjct: 894 IVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDC 953

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K ISK   REIV+RD  RFHHFK G CSC DYW
Sbjct: 954 HNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 150/262 (57%), Gaps = 5/262 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLA 157
           +F  + + N+F WN ++ GY  +     A+  + ++  V+  +PD  T+P L+KA +   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           D+ +G+  H +A++ G    +FV N+++ +Y   G + +A ++F+ M E++L++WNS+I 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 218 GFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           GF+ NG   EA   FR +  + +G+ PD  TMV+L   C+  G + +G   H    K+GL
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V NAL+D YSKCG +  A  +FR++  ++ VSW++++   +  GF  E  +L ++
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 336 --MEIGGFVPGEVTFVGVLYAC 355
             ME       EVT + +L AC
Sbjct: 405 MWMEEELMEVNEVTILNLLPAC 426



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 187/410 (45%), Gaps = 49/410 (11%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           H  K VH  +++ G+ ++   +G  +I       F +  A  +F  + + N+ +WN++IR
Sbjct: 227 HLGKSVHGMAVKMGLIMD-LFVGNAMIALYGKCGF-LDEAVELFDKMPEQNLISWNSLIR 284

Query: 117 GYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           G++E+   L A   +  +  SG  + PD  T   LL   S   +V +G   H +A++ G 
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
              + V N+L+ MY+  G + +A  +F  +  + +V+WNS+I  ++  G   E   L R+
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 235 M--ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           M    E +E +  T+++L  AC E   L   R  H Y  +        +NNA +  Y+KC
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G ++ A+ VF  M  ++  SW+ ++ G A NG   +AL+ + EM   G +P + + V +L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 353 YACS-----------------------------------HCGMVDEGFSYFKRMKDEYGI 377
            AC                                    HC     G +YF+RM D+  +
Sbjct: 525 LACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSV 584

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACT 424
                 +  M+    +  L  +A    + ML   + P+ +   ++LGAC+
Sbjct: 585 C-----WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACS 629



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 149 LLKAISKLADVRMGEQTHS-VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           LL+   +  +V +G +    + + + F     +   L+ MY+  G+  ++  VF+ +  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRA 266
           +L  WN++++G+  N   +EA+  F E+ S    +PD +T   L  AC     + LG+  
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H    K+GL  ++ V NA++  Y KCG +  A  +F +M ++N +SW++L+ G + NGF 
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 327 KEALELFKE-MEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            EA   F+  +E G G +P   T V +L  CS  G VD G      M  + G++ ++   
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVC 351

Query: 385 GCMVDLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHG-------------- 427
             ++D+  + G + +A   +  I+N     + V W +++GA +  G              
Sbjct: 352 NALIDMYSKCGCLSEAAILFRKIEN----KSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLS--NLYAYEQR 462
              + E+   T+L L P    +  LLS   L+ Y  R
Sbjct: 408 EEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR 444


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 322/574 (56%), Gaps = 26/574 (4%)

Query: 69  HGVPLNNPDLG--KYLIYAIVSL---SFPMSYAHNIFSHVQDPN--IFTWNTMIRGYAES 121
           H V L + DL    ++  A+V +   +  ++ A  +F  V +P+  +  WN MI GYA++
Sbjct: 305 HAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQA 364

Query: 122 ANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
                A+EL+S+M   +G  P   T   +L A ++       E  H   ++ G     FV
Sbjct: 365 GMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFV 424

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM----- 235
           QN+L+ MYA  G +  A ++F ++  RD+V+WN++I G    G   EA  L  EM     
Sbjct: 425 QNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSP 484

Query: 236 -------ASEG----VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
                    EG      P+  T+++L   CA L A A G+  H Y  +  L  ++ V +A
Sbjct: 485 SPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSA 544

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVP 343
           L+D Y+KCG + A++ VF  + +RN ++W+ L++   ++G G EA+ LF EM  GG   P
Sbjct: 545 LVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATP 604

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            EVTF+  L ACSH G+VD G   F  M+ ++G+ P  +   C+VD+LGRAG + +AY  
Sbjct: 605 NEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSI 664

Query: 404 IQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           I +M      V  W +LLGAC +H +  + E+A   L +LEP  +  YVLL N+Y+    
Sbjct: 665 ITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGM 724

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W     VR  M ++ V K PG S +EL   +  F  G+ SHP + E+HA +  + ++++ 
Sbjct: 725 WDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRR 784

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           EGY P T  V  D++E+EK   L YHSEK+AIAF L+   PG  +RV KNLRVC DCH A
Sbjct: 785 EGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEA 844

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            K +SK+  R+IV+RD  RFHHF+DG CSC DYW
Sbjct: 845 AKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 163/344 (47%), Gaps = 28/344 (8%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ TWNTMI    +      AVE+   M   G++PD  T+   L A S+L  + +G + H
Sbjct: 246 DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMH 305

Query: 167 SVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNG 223
           +V +++    +  FV ++LV MYA    V  A +VF+++ E  R L  WN++I G+A  G
Sbjct: 306 AVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAG 365

Query: 224 KPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              EAL LF  M +E G  P   TM  +  ACA     A     H YV K G++ N  V 
Sbjct: 366 MDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQ 425

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF- 341
           NAL+D Y++ G +  A+R+F  +  R+ VSW+TL+ G  V G   EA +L  EM++    
Sbjct: 426 NALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPS 485

Query: 342 ---------------VPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEH 383
                          +P  +T + +L  C+       G     Y  R    + +   I  
Sbjct: 486 PSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVR----HALESDIAV 541

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
              +VD+  + G +  A   + + L   N + W  L+ A  +HG
Sbjct: 542 GSALVDMYAKCGCLA-ASRAVFDRLPRRNVITWNVLIMAYGMHG 584



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 147/294 (50%), Gaps = 31/294 (10%)

Query: 160 RMGEQTHSVAIRNGF-----ESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------D 208
           R+G + H+ A++ GF     E   F  N+L+ MYA  G V DA  +F   +        D
Sbjct: 189 RLGREAHAFALKRGFLDEGRERFPF--NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGD 246

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V WN++I+     G+  EA+ +  +M S GV PDG T  S   AC+ L  LALGR  H 
Sbjct: 247 VVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHA 306

Query: 269 YVWK-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGF 325
            V K   L+ N  V +AL+D Y+    + +A+RVF  + +  R    W+ ++ G A  G 
Sbjct: 307 VVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGM 366

Query: 326 GKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            +EALELF  ME   G  P E T  GVL AC+      EGF+  + M   +G + K    
Sbjct: 367 DEEALELFSRMEAEAGCAPSETTMSGVLPACAR----SEGFAGKEAM---HGYVVKRGMA 419

Query: 385 G------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           G       ++D+  R G +  A   I  M+ P + V W TL+  C + GH+A A
Sbjct: 420 GNRFVQNALMDMYARLGEMDVA-RRIFAMIDPRDVVSWNTLITGCVVQGHAAEA 472



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDACK 199
           D    P  +K+ + L D R     H+ A+R          V N+L+  YA  G +  A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 200 VFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAE 256
           +F   +   RD V++NS+I+      +   AL   R+M +EG  +   +T+VS+  AC+ 
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSH 181

Query: 257 L---GALALGRRAHTYVWKVGLSDNVNVN---NALLDFYSKCGIIIAAQRVFREMRKR-- 308
           L       LGR AH +  K G  D        NALL  Y++ G++  AQ +FR       
Sbjct: 182 LPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFS 241

Query: 309 ----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
               + V+W+T++  L   G   EA+E+  +M   G  P  VTF   L ACS   M+  G
Sbjct: 242 PGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALG 301


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 311/532 (58%), Gaps = 55/532 (10%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDA 197
           ++PD  +   +L A + +     G+  H +A+R+G FE L FV N+LV MYA  G V +A
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDL-FVGNALVDMYAKCGMVDEA 67

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE---------------- 241
            KVF+ + E+D+V+WN+++NG++  G+  +AL LF +M  E +E                
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 242 ------------------------------------PDGYTMVSLFSACAELGALALGRR 265
                                               P+ +T+     ACA L AL LGR+
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 266 AHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
            H Y+ +    S  + V N L+D Y+K G I  A+ VF  ++++N VSW++L+ G  ++G
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
            GKEALE+F EM   G  P  VT + VLYACSH GM+D+G  +F  M  E+G++P  EH+
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
            CMVDLLGRAG + +A E I+ M M P++++W  LL  C IH +  + E A   LL+L  
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNS 367

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
           ++ G Y LLSN+YA  +RW +V  VR  M    ++K PG S V+       F++ D++HP
Sbjct: 368 ENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHP 427

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           Q+++I+ +L  +T+++K+ GYVP T     D+++EEK D L  HSEK+A+A+ ++ +APG
Sbjct: 428 QSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPG 487

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            P+R+ KNLRVC DCH AI  IS +   EI++RD SRFHHFK G CSC  YW
Sbjct: 488 APIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 162/375 (43%), Gaps = 76/375 (20%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFS 101
           + +L  CAS    L  K VH  ++R G    +  +G  L+  YA   +   +  A  +F 
Sbjct: 17  VNVLPACASMGAWLHGKAVHGIAVRSG-SFEDLFVGNALVDMYAKCGM---VDEASKVFD 72

Query: 102 HVQDPNIFTWNTMIRGYA-----ESANPLL------------------------------ 126
            +++ ++ +WN M+ GY+     E A  L                               
Sbjct: 73  RIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCE 132

Query: 127 ---------------AVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
                          A+EL+S M      +KP+  T    L A ++LA +R+G Q H+  
Sbjct: 133 TLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYI 192

Query: 170 IRNGFES-LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           +RN F+S  ++V N L+ MYA  G +  A  VF+ + +++ V+W S++ G+  +G+  EA
Sbjct: 193 LRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEA 252

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLD 287
           L +F EM   G++PDG T++ +  AC+  G +  G      + K  G+         ++D
Sbjct: 253 LEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVD 312

Query: 288 FYSKCGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVNG-------FGKEALELFKEMEIG 339
              + G +  A  +   M+   +++ W  L+ G  ++          K+ LEL  E +  
Sbjct: 313 LLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND-- 370

Query: 340 GFVPGEVTFVGVLYA 354
               G  T +  +YA
Sbjct: 371 ----GSYTLLSNIYA 381


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 316/557 (56%), Gaps = 36/557 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESA-----NPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           A  IF  +   ++ +W+ MI GYA+S      +     +L  +M   G+ P+  T+  +L
Sbjct: 312 AREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA------------- 197
           +A +    +  G Q H+   + GFE    +Q ++ +MYA  G + +A             
Sbjct: 372 RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVV 431

Query: 198 -----------C-------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
                      C       KVF  M  R++V+WN +I G+A NG   +   L   M +EG
Sbjct: 432 AWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG 491

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
            +PD  T++++  AC  L  L  G+  H    K+GL  +  V  +L+  YSKCG +  A+
Sbjct: 492 FQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEAR 551

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            VF +M  R+ V+W+ ++ G   +G G EA++LFK M      P E+T   V+ ACS  G
Sbjct: 552 TVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAG 611

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +V EG   F+ M++++ + P+ +H+GCMVDLLGRAG +++A E+IQ+M   P+  +W  L
Sbjct: 612 LVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHAL 671

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC  H +  +AE A   +L+LEP ++  Y+ LSN+YA   RW +  +VRR M    +K
Sbjct: 672 LGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLK 731

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K  G S +E+  R+  F   D +HP+ + IHA L  +TK++K  GY P    V  D+++ 
Sbjct: 732 KDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDV 791

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           +KE AL +HSEK+AIA+ L+ T  GTP+R++KNLRVC DCH A K ISK+  REIV RD 
Sbjct: 792 QKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDA 851

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFH+F +G CSC D+W
Sbjct: 852 NRFHYFNNGTCSCGDFW 868



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 188/366 (51%), Gaps = 13/366 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+    +   + L N  +  Y  +  V+       A  +F  +   ++ TW++MI  YA
Sbjct: 80  KQLDELGVEIDIYLGNSLINFYSKFEDVA------SAEQVFRRMTLRDVVTWSSMIAAYA 133

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            + +P  A + + +M  + I+P+  T+  +LKA +  + +  G + H++    G E+ V 
Sbjct: 134 GNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVA 193

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V  +L+ MY+  G +  AC+VF  M+ER++V+W ++I   A + K NEA  L+ +M   G
Sbjct: 194 VATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG 253

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           + P+  T VSL ++C    AL  GRR H+++ + GL  ++ V NAL+  Y KC  +  A+
Sbjct: 254 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAR 313

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFG-----KEALELFKEMEIGGFVPGEVTFVGVLYA 354
            +F  M KR+ +SWS ++ G A +G+       E  +L + M   G  P +VTF+ +L A
Sbjct: 314 EIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRA 373

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+  G +++G      +  + G          + ++  + G + +A E + + +   N V
Sbjct: 374 CTAHGALEQGRQIHAELS-KVGFELDRSLQTAIFNMYAKCGSIYEA-EQVFSKMANKNVV 431

Query: 415 IWRTLL 420
            W + L
Sbjct: 432 AWTSFL 437



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 157/344 (45%), Gaps = 48/344 (13%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           A++L   +   G+  +++TY  +++  +K      G+  H      G E  +++ NSL++
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
            Y+ F  V  A +VF  M+ RD+V W+S+I  +A N  P +A   F  M    +EP+  T
Sbjct: 100 FYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRIT 159

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            +S+  AC     L  GR+ HT V  +G+  +V V  AL+  YSKCG I  A  VF +M 
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT 219

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC----------- 355
           +RN VSW+ ++   A +    EA EL+++M   G  P  VTFV +L +C           
Sbjct: 220 ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 279

Query: 356 --SH----------------------CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
             SH                      C  V E    F RM         +  +  M+   
Sbjct: 280 IHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR-----DVISWSAMIAGY 334

Query: 392 GRAGL-----VKQAYEYIQNMLMP---PNAVIWRTLLGACTIHG 427
            ++G      + + ++ ++ M      PN V + ++L ACT HG
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 99/172 (57%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +FS +   N+ +WN MI GYA++ + +   EL S M   G +PD  T   +L+A
Sbjct: 446 LSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEA 505

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              LA +  G+  H+ A++ G ES   V  SL+ MY+  G V +A  VF+ MS RD VAW
Sbjct: 506 CGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAW 565

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
           N+++ G+  +G   EA+ LF+ M  E V P+  T+ ++ SAC+  G +  GR
Sbjct: 566 NAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGR 617



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+  EA+ L   +   G+  +  T   +   CA+      G+  H  + ++G+  ++ + 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N+L++FYSK   + +A++VFR M  R+ V+WS+++   A N    +A + F+ M      
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  +TF+ +L AC++  ++++G      +K   G+   +     ++ +  + G +  A E
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVK-AMGMETDVAVATALITMYSKCGEISVACE 213

Query: 403 YIQNMLMPPNAVIWRTLLGACTIH 426
               M    N V W  ++ A   H
Sbjct: 214 VFHKM-TERNVVSWTAIIQANAQH 236



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 46  ITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           IT+L+ C +     + K VHA +++ G  L +  +    +  + S    ++ A  +F  +
Sbjct: 500 ITILEACGALAGLERGKLVHAEAVKLG--LESDTVVATSLIGMYSKCGQVAEARTVFDKM 557

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            + +   WN M+ GY +  + L AV+L+ +M    + P+  T   ++ A S+   V+ G 
Sbjct: 558 SNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGR 617

Query: 164 QTHSVAIRNGFESLVFVQN--SLVHMYAAFGHVKDACKVFELM-SERDLVAWNSVINGFA 220
           +   + ++  F+     Q+   +V +    G +++A +  + M  E D+  W++++    
Sbjct: 618 EIFRM-MQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACK 676

Query: 221 S 221
           S
Sbjct: 677 S 677


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/525 (38%), Positives = 307/525 (58%), Gaps = 36/525 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  + + N+ +WN+MI GY ++  P    +L+ +M  SG+ PD  T   +L A
Sbjct: 206 LDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA 265

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                                              Y   G++ +ACK F  + E+D V W
Sbjct: 266 -----------------------------------YFQCGYIDEACKTFREIKEKDKVCW 290

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            +++ G A NGK  +AL LFREM  E V PD +T+ S+ S+CA L +L  G+  H     
Sbjct: 291 TTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
            G+  ++ V++AL+D YSKCG    A  VF+ M  RN +SW+++++G A NG   EAL L
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALAL 410

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           ++EM      P  +TFVGVL AC H G+V+ G  YF  +   +G+ P  +H+ CM++LLG
Sbjct: 411 YEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLG 470

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG + +A + I++M   PN +IW TLL  C I+      E+A   L +L+P ++G Y++
Sbjct: 471 RAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIM 530

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA   RW +V  VR  M   ++KK   +S +E+ N+V +F   DR+H +TE+I+  
Sbjct: 531 LSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEE 590

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG-TPVRVVK 571
           L  + KKL+  G+ P T  V  D+ EEEK D++ YHSEK+A+AF L+    G TP+R++K
Sbjct: 591 LNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMK 650

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           N+RVC DCH+ +K +SK+  R I++RD +RFHHF +G CSC+D W
Sbjct: 651 NIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 157/322 (48%), Gaps = 37/322 (11%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   +  ++NT+I G++ +     A+E + +M   G +   +T+  +L A S+L D
Sbjct: 111 VFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLD 170

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           ++ G+Q H   +       VFV N+L +MYA  G +  A  +F+ M  +++V+WNS+I+G
Sbjct: 171 IKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISG 230

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  NG+P     LF EM S G+ PD  T+ ++ SA                         
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA------------------------- 265

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
                     Y +CG I  A + FRE+++++ V W+T++VG A NG  ++AL LF+EM +
Sbjct: 266 ----------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLL 315

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P   T   V+ +C+    + +G +   +    +G+   +     +VD+  + G   
Sbjct: 316 ENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV-IFGVDHDLLVSSALVDMYSKCGETA 374

Query: 399 QAYEYIQNMLMPPNAVIWRTLL 420
            A+   + ML   N + W +++
Sbjct: 375 DAWIVFKRML-TRNVISWNSMI 395



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 118/209 (56%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  N+++  Y+  G+V+D   VF+ MS  D V++N+VI GF+ NG  ++AL  F  M  
Sbjct: 89  VFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQE 148

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EG E   YT VS+  AC++L  +  G++ H  +    L ++V V NAL + Y+KCG +  
Sbjct: 149 EGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQ 208

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ +F  M  +N VSW++++ G   NG  +   +LF EM+  G +P +VT   +L A   
Sbjct: 209 ARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQ 268

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           CG +DE    F+ +K++  +       GC
Sbjct: 269 CGYIDEACKTFREIKEKDKVCWTTMMVGC 297



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 76  PDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYS 132
           PD  +  I  I+S  F   Y   A   F  +++ +   W TM+ G A++     A+ L+ 
Sbjct: 254 PD--QVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFR 311

Query: 133 KMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           +M +  ++PD  T   ++ + ++LA +  G+  H  A+  G +  + V ++LV MY+  G
Sbjct: 312 EMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCG 371

Query: 193 HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
              DA  VF+ M  R++++WNS+I G+A NGK  EAL L+ EM  E ++PD  T V + S
Sbjct: 372 ETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLS 431

Query: 253 ACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNA 310
           AC   G +  G+     + K+ G++   +  + +++   + G +  A  + + M  + N 
Sbjct: 432 ACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNC 491

Query: 311 VSWSTLVVGLAVN 323
           + WSTL+    +N
Sbjct: 492 LIWSTLLSVCRIN 504



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 42/216 (19%)

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW--------------------------- 313
           + N LL  Y+K G +  A+ +F +M +R+  SW                           
Sbjct: 60  LQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHD 119

Query: 314 ----STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
               +T++ G + NG   +ALE F  M+  GF   + T V VL+ACS    +  G     
Sbjct: 120 AVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHG 179

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           R+     +   +  +  + ++  + G + QA  ++ + ++  N V W ++     I G+ 
Sbjct: 180 RIV-ATSLGESVFVWNALTNMYAKCGALDQA-RWLFDRMVNKNVVSWNSM-----ISGYL 232

Query: 430 AIAEIARSTLLQLEPKHSG---DYVLLSN-LYAYEQ 461
              +    T L  E + SG   D V +SN L AY Q
Sbjct: 233 QNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQ 268


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 347/630 (55%), Gaps = 68/630 (10%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           ++S HKL+Q+H    R  V  ++  +    I +  SL+  + YA +IF   +  N + +N
Sbjct: 52  SNSTHKLRQIHGQLYRCNV-FSSSRVVTQFISSCSSLN-SVDYAISIFQRFELKNSYLFN 109

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +IRG AE++    ++  +  M    I PD  T+PF+LK+ + L++  +G   H   ++ 
Sbjct: 110 ALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKF 169

Query: 173 GFESLVFVQ-----------------------------------NSLVHMYAAFGHVKDA 197
           G E   FV+                                   N L+H Y   G +  A
Sbjct: 170 GLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKA 229

Query: 198 CKVFELMSERDLVAWNSVI-------------------------------NGFASNGKPN 226
            ++F+ M ++D  +WNS+I                               NGF+ NG P 
Sbjct: 230 TELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPE 289

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
           +AL  F  M  EG  P+ YT+VS  SACA++GAL  G R H Y+   G   N+ +  AL+
Sbjct: 290 KALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALV 349

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D Y+KCG I  A++VF E +++  + WS ++ G A++G  ++AL+ F+ M+  G  P  V
Sbjct: 350 DMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSV 409

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
            F+ VL ACSH G V+EG  +F  M+  Y I P ++H+  +VD+LGRAG + +A ++I+ 
Sbjct: 410 VFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRA 469

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M + P+ V+W  L  AC  H +  +AE+A   LLQLEPKH G YV LSN YA   RW + 
Sbjct: 470 MPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDA 529

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
           + VR +M      K PG S +E+ +++  F  GD +H +  EI++ L EI+   + +GY 
Sbjct: 530 ERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYT 589

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
              E V  +IEEEEKE+AL YHSEK+A+AF +V+T PGT VR+VKNLRVC DCH  +K  
Sbjct: 590 KEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYA 649

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SK+  REI++RD  RFHHF DG CSC DYW
Sbjct: 650 SKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/627 (36%), Positives = 344/627 (54%), Gaps = 62/627 (9%)

Query: 46  ITLLQV---CAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           ITL+ V   CAS  ++   KQ H F++   + + N  +G  L+         M  A+ +F
Sbjct: 230 ITLVNVLPPCASVGTRSLGKQFHGFAVTSEM-IQNMFVGNCLVDMYAKFGM-MDEANTVF 287

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH------------------------- 135
           S++   ++ +WN M+ GY++      AV L+ +M                          
Sbjct: 288 SNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGY 347

Query: 136 ----------VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-------NGFESLV 178
                      SGIKP+  T   +L   + +  +  G++ H  AI+       NG     
Sbjct: 348 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDEN 407

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V N L+ MYA    V  A  +F+ +S  ERD+V W  +I G++ +G  N+AL L  EM 
Sbjct: 408 MVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 237 SEGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN-----VNNALLDFY 289
            E  +  P+ +T+     ACA L AL++G++ H Y     L +  N     V+N L+D Y
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALSIGKQIHAY----ALRNQQNAVPLFVSNCLIDMY 523

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
           +KCG I  A+ VF  M ++N V+W++L+ G  ++G+G+EAL +F+EM   GF    VT +
Sbjct: 524 AKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLL 583

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
            VLYACSH GM+D+G  YF RMK ++G+ P  EH+ C+VDLLGRAG +  A   I+ M M
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P  V+W  LL  C IHG   + E A   + +L   + G Y LLSN+YA   RW +V  +
Sbjct: 644 EPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRI 703

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R  M  + +KK PG S VE       FF+GD++HP  +EI+ +L++  +++K  GYVP T
Sbjct: 704 RSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPET 763

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
                D+++EEK+D L  HSEK+A+A+ ++ T  G  +R+ KNLRVC DCH A   +S++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
              EI++RD SRFHHFK+G CSC+ YW
Sbjct: 824 IDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 51/374 (13%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           ST A +  P    + KC T+ QV        K +H   +  G+   N  L  +LI   +S
Sbjct: 24  STSALEITP--PFIHKCKTISQV--------KLIHQKLLSFGILTLN--LTSHLISTYIS 71

Query: 89  LSFPMSYAHNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           L   +S+A ++       D  ++ WN++IR Y  +      +  +  MH     PD +T+
Sbjct: 72  LGC-LSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTF 130

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
           PF+ KA  +++ VR G+ +H+++   GF S VFV N+LV MY+  G + DA KVF+ M  
Sbjct: 131 PFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPV 190

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRR 265
            D+V+WNS+I  +A  GKP  AL +F +M +E G  PD  T+V++   CA +G  +LG++
Sbjct: 191 WDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQ 250

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV------- 318
            H +     +  N+ V N L+D Y+K G++  A  VF  M  ++ VSW+ +V        
Sbjct: 251 FHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGR 310

Query: 319 ----------------------------GLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
                                       G A  G G EAL + ++M   G  P EVT + 
Sbjct: 311 FEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 351 VLYACSHCGMVDEG 364
           VL  C+  G +  G
Sbjct: 371 VLSGCASVGALMHG 384



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 184 LVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           L+  Y + G +  A  +      S+  +  WNS+I  + +NG+ N+ L+ F  M S    
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           PD YT   +F AC E+ ++  G  +H      G   NV V NAL+  YS+CG +  A++V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSHCGM 360
           F EM   + VSW++++   A  G  K ALE+F +M    GF P ++T V VL  C+  G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
              G   F        ++  +    C+VD+  + G++ +A     NM +  + V W  + 
Sbjct: 245 RSLG-KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPV-KDVVSWNAM- 301

Query: 421 GACTIHGHSAIAEIARSTLL---QLEPKHSGDYVLLS-NLYAYEQRWLNVQE--VRRTMV 474
               + G+S I     +  L     E K   D V  S  +  Y QR L  +   V R M+
Sbjct: 302 ----VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML 357

Query: 475 KERVK 479
              +K
Sbjct: 358 SSGIK 362


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/435 (46%), Positives = 283/435 (65%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
            ++V      G V DA K+F+ M ER+L++WN++I+G+   G+  +AL +F +M + G+E
Sbjct: 165 TTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIE 224

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            +G+   S   AC   G LA GR  H +V + G++ +  +  A++D Y KCG +  A  V
Sbjct: 225 GNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHV 284

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F+ +  +   SW+ ++ GLAV+G  K+A+ELF EME     P +VT V VL AC+H GMV
Sbjct: 285 FKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMV 344

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
            +G +YF  +   YGI PK+EH+GCMVDL GRAGL+ +A + I +M M P+  +   L G
Sbjct: 345 SDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFG 404

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC IH    + E     +++L+P++SG YVLL+NL A   +W++V +VRR M +  V K 
Sbjct: 405 ACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKE 464

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK 541
            G S++E+   V EF  G   H Q +EI A + ++ +K++LEGY+P T +V  DI EEEK
Sbjct: 465 AGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEK 524

Query: 542 EDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
           E  L YHSEK+AIAF L+ T PG  VR+ KNLRVC DCH A K IS+V+ REIVVRDR+R
Sbjct: 525 EVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNR 584

Query: 602 FHHFKDGHCSCRDYW 616
           FHHFKDG CSCRDYW
Sbjct: 585 FHHFKDGTCSCRDYW 599



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 110/211 (52%), Gaps = 1/211 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ +WN MI GY ++   L A+E++ +M   GI+ +       + A + 
Sbjct: 180 ARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTG 239

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G + H    ++G      +  ++V MY   G V++A  VF+++  + L +WN +
Sbjct: 240 AGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCM 299

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY-VWKVG 274
           I G A +G+  +A+ LF EM  E V PD  T+V++ +ACA  G ++ G     Y V + G
Sbjct: 300 IGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYG 359

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           +   +     ++D + + G++  A++V  +M
Sbjct: 360 IEPKMEHYGCMVDLFGRAGLLDEAKKVIDDM 390


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 327/528 (61%), Gaps = 4/528 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YAH++F  + +PN+ +W +++ GY     P  A+ LY+KM  S + P+  T   ++ +
Sbjct: 57  IQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINS 116

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S LAD++ G+  H+     G +  + V +SLV MY     V  A  VF+ MS R++V+W
Sbjct: 117 CSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSW 176

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRRAHTYVW 271
            ++I G+A NGK  EAL +FRE +S  +E P+ + + S+ +ACA LG L  G+  H  V 
Sbjct: 177 TAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVI 236

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           + G   N  V +AL+D Y+KCG  + +++VFR +R  + + +++++VG A  G GK +L 
Sbjct: 237 RGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLN 296

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF+EM     +P +VTFVG+L+ACSH G+VDEG      M +++G+MP + H+ C+VD+L
Sbjct: 297 LFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDML 356

Query: 392 GRAGLVKQAYEYIQNMLMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            R G + +AY+  +++ + PN  A++W TLL +  +HG   +A  A   L++   + +G 
Sbjct: 357 SRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGA 416

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YV LSN Y     W N   +R  M    V K PG S +E+ + ++ F+ GD S  + +E+
Sbjct: 417 YVTLSNTYTLAGEWENAHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEV 476

Query: 510 HAMLAEITKKLKLEGYV-PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
            ++L E+ +++   G V   T  VF D+E+E KE  +  HSE++A+AF L++   G  +R
Sbjct: 477 ISLLRELERRMMERGCVGGSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIR 536

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V+KNLR+C+DCH A KLISK+  R+ VVRD +RFHHFKDG C+C+D+W
Sbjct: 537 VMKNLRICSDCHEAFKLISKIVERDFVVRDVNRFHHFKDGSCTCKDFW 584



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 47/337 (13%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +++ +    D      TH+   + G  +     N L++ Y  F  ++ A  +F+ M E +
Sbjct: 12  IIQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPN 71

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V+W S+++G+ + G+P  AL L+ +M+   V P+G+T+ ++ ++C+ L  L  G+  H 
Sbjct: 72  VVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHA 131

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           +V  +GL  N+ V ++L+D Y KC  +  A+ VF  M  RN VSW+ ++ G A NG G E
Sbjct: 132 HVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYE 191

Query: 329 ALELFKEM---------------------EIGGFVPGEVTFVGVLYAC------------ 355
           ALE+F+E                       +G  V G+VT   V+               
Sbjct: 192 ALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALV 251

Query: 356 ---SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA---YEYIQNMLM 409
              + CG        F+R+++     P +  +  M+    + GL K +   +E + +  +
Sbjct: 252 DMYAKCGSFLYSEKVFRRIRN-----PSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKV 306

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
            PN V +  +L AC+   HS + +     L  +  KH
Sbjct: 307 MPNDVTFVGILHACS---HSGLVDEGLRLLNSMHEKH 340


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/531 (38%), Positives = 318/531 (59%), Gaps = 3/531 (0%)

Query: 85  AIVSLSFPMSYAHN---IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           A+V++       H+   ++  + D ++ +WN  + G  +       + ++  M   G  P
Sbjct: 455 ALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIP 514

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           + +T+  +L + S L DV  G Q H+  I+N  +   FV  +L+ MYA   +++DA   F
Sbjct: 515 NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAF 574

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
             +S RDL  W  +I  +A   +  +AL  FR+M  EGV+P+ +T+    S C+ L +L 
Sbjct: 575 NRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE 634

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G++ H+ V+K G   ++ V +AL+D Y+KCG +  A+ +F  + +R+ ++W+T++ G A
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            NG G +AL  F+ M   G  P  VTF G+L ACSH G+V+EG  +F  M  ++GI P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           +H  CMVD+LGR G   +  ++IQ M +  NA+IW T+LGA  +H +  + E A + L +
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           L+P+    Y+LLSN++A E RW +V+ VR  M  + VKK PG S VE   +V  F   D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           SHPQ +EIH  L E+ ++L    YVP+TE V  ++ E EK++ L +HSE++A+ F L++T
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
           +    +R+ KNLR+C DCH  +K IS + ++EIVVRD  RFHHFK+G CSC
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 198/398 (49%), Gaps = 10/398 (2%)

Query: 47  TLLQVCASSKHKLKQ---VHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           T+L+ CA+SK+ LKQ   +H+  I+ G   N     G   +Y+   L+     A  +F  
Sbjct: 319 TVLKGCANSKN-LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID---AIGVFKT 374

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++ P+I  W+ +I    +      +++L+  M +    P+ +T   LL A +   +++ G
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +  H+   + GFE+ V V N+LV MY   G V D  K++E M +RDL++WN+ ++G    
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G  +  LT+F  M  EG  P+ YT +S+  +C+ L  +  GR+ H ++ K  L DN  V 
Sbjct: 495 GMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            AL+D Y+KC  +  A   F  +  R+  +W+ ++   A    G++AL  F++M+  G  
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P E T  G L  CS    + EG      M  + G +  +     +VD+  + G +++A E
Sbjct: 615 PNEFTLAGCLSGCSSLASL-EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA-E 672

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
            +   L+  + + W T++     +G    A  A   +L
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMML 710



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 199/417 (47%), Gaps = 18/417 (4%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCI----TLLQVCASSKH--KLKQVHAFSIRH 69
           + + P R    +  T  ++ N +    +K +    ++L+ CAS +     K +H   ++ 
Sbjct: 82  VHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKD 141

Query: 70  GVPLNNPDLGKYL----IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPL 125
            +   NPD   ++    +YA    S   +YA  + + + D ++ +W  +I+G        
Sbjct: 142 VI---NPDSHLWVSLVNVYAKCRYS---AYARLVLAKMPDRDVVSWTALIQGLVAEGFAN 195

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
            ++ L+ +M   GI P+  T    LKA S    + +G+Q H+ A + G    +FV ++LV
Sbjct: 196 DSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALV 255

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
            +YA  G ++ A K+F  M E++ V WN ++NG+A  G     L LF  M    V+ + +
Sbjct: 256 DLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEF 315

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+ ++   CA    L  G+  H+ + K G   N  +   L+D YSKCG+ I A  VF+ +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           +K + V WS L+  L   G  +E+++LF  M +G  +P + T   +L A ++ G +  G 
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           S    +  +YG    +     +V +  + G V    +  ++M+   + + W   L  
Sbjct: 436 SIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMV-DRDLISWNAYLSG 490



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           KQ+HA + + G+ L   DL  ++  A+V L      +  A  +F  + + N  TWN ++ 
Sbjct: 233 KQMHAQAFKLGLLL---DL--FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GYA+  +    ++L+  M    +K +  T   +LK  +   +++ G+  HS+ I+ G+E 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             F+   LV MY+  G   DA  VF+ + + D+V W+++I      G+  E++ LF  M 
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
                P+ YT+ SL SA    G L  G+  H  VWK G   +V V+NAL+  Y K G + 
Sbjct: 408 LGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVH 467

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
              +++  M  R+ +SW+  + GL   G     L +F  M   GF+P   TF+ +L +CS
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/610 (35%), Positives = 345/610 (56%), Gaps = 43/610 (7%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFS 101
           +++ + CAS +  +  K+VH  +IR G   ++  LG  LI  Y     S     A  +F 
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGF-CSDVLLGNALIDMYGKCRCS---EGARLVFE 137

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++ +W +M   Y        A+  + KM ++G +P++ T   +L A + L D++ 
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN-------- 213
           G + H   +RNG    VFV ++LV+MYA+   ++ A  VF+ MS RD V+WN        
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257

Query: 214 ---------------------------SVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
                                      +VI G   NG+  +AL +   M + G +P+  T
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQIT 317

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           + S+  AC  L +L  G++ H Y+++     ++    AL+  Y+KCG +  ++RVF  M 
Sbjct: 318 ITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMT 377

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           KR+ VSW+T+++  +++G G+EAL LF+EM   G  P  VTF GVL  CSH  +VDEG  
Sbjct: 378 KRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLL 437

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            F  M  ++ + P  +H  CMVD+L RAG +++AYE+I+ M + P A  W  LLG C ++
Sbjct: 438 IFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVY 497

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
            +  +  IA + L ++E  + G+YVLLSN+    + W    E R+ M    V K PG S 
Sbjct: 498 KNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSW 557

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           +++ NRV  F +GD+S+ Q++EI+  L  + +K+++ GY+P T+ V  D+++EEKE+ L 
Sbjct: 558 IQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLC 617

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
            HSEK+A+AF ++N    + +RV KNLR+C DCH AIK ++K+   +I+VRD  RFHHF+
Sbjct: 618 NHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFR 677

Query: 607 DGHCSCRDYW 616
           DG CSC+D+W
Sbjct: 678 DGLCSCQDFW 687



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 181/382 (47%), Gaps = 44/382 (11%)

Query: 86  IVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTH 144
           + S S  +  A ++F  +  P++ TW  +I    +    L A++ Y+   H + ++PD  
Sbjct: 20  VYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKL 79

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
               + KA + L DV   ++ H  AIR GF S V + N+L+ MY      + A  VFE M
Sbjct: 80  LLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGM 139

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
             RD+++W S+ + + + G   EAL  FR+M   G  P+  T+ S+  AC +L  L  GR
Sbjct: 140 PFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV------ 318
             H +V + G+  NV V++AL++ Y+ C  I  AQ VF  M +R+ VSW+ L+       
Sbjct: 200 EVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNK 259

Query: 319 ----GLAV-------------------------NGFGKEALELFKEMEIGGFVPGEVTFV 349
               GL+V                         NG  ++ALE+   M+  GF P ++T  
Sbjct: 260 ECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITIT 319

Query: 350 GVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
            VL AC++   +  G     Y  R    +     +     +V +  + G ++ +   + +
Sbjct: 320 SVLPACTNLESLRGGKQIHGYIFR----HWFFQDLTTTTALVFMYAKCGDLELS-RRVFS 374

Query: 407 MLMPPNAVIWRTLLGACTIHGH 428
           M+   + V W T++ A ++HG+
Sbjct: 375 MMTKRDTVSWNTMIIATSMHGN 396



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 1/174 (0%)

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEP 242
            + +Y+  G ++ A  +F+ + + DL  W  +I+    +G+  EA+  + +   +  VEP
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           D   ++S+  ACA L  +   +R H    + G   +V + NAL+D Y KC     A+ VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
             M  R+ +SW+++       G  +EAL  F++M + G  P  VT   +L AC+
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 359/632 (56%), Gaps = 36/632 (5%)

Query: 16  ISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNN 75
           IS +P  + +L +   +S ++ +  V+   I+LL     +   ++ +H  +I+      +
Sbjct: 3   ISPVPTIIANLPNPHSSSHDSNLRRVI---ISLLHKNRKNPKHVQSIHCHAIKTRTS-QD 58

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135
           P +   L+     +++ + +A  +F   Q+PN++ + ++I G+    +   A+ L+ +M 
Sbjct: 59  PFVAFELLRVYCKVNY-IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMV 117

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
              +  D +    +LKA      +  G++ H + +++G      +   LV +Y   G ++
Sbjct: 118 RKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLE 177

Query: 196 DACKVFELMSERDLVA-------------------------------WNSVINGFASNGK 224
           DA K+F+ M ERD+VA                               W  VI+G   NG+
Sbjct: 178 DARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGE 237

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            N  L +FREM  +GVEP+  T V + SACA+LGAL LGR  H Y+ K G+  N  V  A
Sbjct: 238 FNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGA 297

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L++ YS+CG I  AQ +F  +R ++  ++++++ GLA++G   EA+ELF EM      P 
Sbjct: 298 LINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPN 357

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            +TFVGVL ACSH G+VD G   F+ M+  +GI P++EH+GCMVD+LGR G +++A+++I
Sbjct: 358 GITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFI 417

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M +  +  +  +LL AC IH +  + E     L +     SG +++LSN YA   RW 
Sbjct: 418 GRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWS 477

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
              EVR  M K  + K PG S +E+ N + EFF GD  HP+ + I+  L E+    K EG
Sbjct: 478 YAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEG 537

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y+P TE    DI++E+KE AL+ HSE++AI + LV+T   T +RV KNLR+C DCH  IK
Sbjct: 538 YLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIK 597

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LI+K+  R+IVVRDR+RFHHF++G CSC+DYW
Sbjct: 598 LIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/573 (38%), Positives = 329/573 (57%), Gaps = 14/573 (2%)

Query: 39  TSVVRKCIT---LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY 95
            ++++KC     L+Q      H L+ +     RH + + N  L  Y      +    +  
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSI----FRHDIVMGNTLLNMY------AKCGSLEE 113

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  TW T+I GY++   P  A+  +++M   G  P+  T   ++KA + 
Sbjct: 114 ARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                 G Q H   ++ GF+S V V ++L+ +Y  +G + DA  VF+ +  R+ V+WN++
Sbjct: 174 ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNAL 233

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A      +AL LF+ M  +G  P  ++  SLF AC+  G L  G+  H Y+ K G 
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                  N LLD Y+K G I  A+++F  + KR+ VSW++L+   A +GFGKEA+  F+E
Sbjct: 294 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEE 353

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P E++F+ VL ACSH G++DEG+ Y++ MK + GI+P+  H+  +VDLLGRAG
Sbjct: 354 MRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A  +I+ M + P A IW+ LL AC +H ++ +   A   + +L+P   G +V+L N
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +   VR+ M +  VKK P  S VE+ N +  F   D  HPQ EEI     E
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEE 532

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+K  GYVP T +V   ++++E+E  L YHSEKIA+AF L+NT PG+ + + KN+RV
Sbjct: 533 VLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRV 592

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           C DCH AIKL SKV  REI+VRD +RFHHFKD 
Sbjct: 593 CGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 160/310 (51%), Gaps = 10/310 (3%)

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ 181
           +N LL     + +  S I  D   Y  LLK  +    +  G   H+  +++ F   + + 
Sbjct: 39  SNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMG 98

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+L++MYA  G +++A KVFE M +RD V W ++I+G++ + +P +AL  F +M   G  
Sbjct: 99  NTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS 158

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ +T+ S+  A A       G + H +  K G   NV+V +ALLD Y++ G++  AQ V
Sbjct: 159 PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  +  RN VSW+ L+ G A     ++ALELF+ M   GF P   ++  +  ACS  G +
Sbjct: 219 FDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFL 278

Query: 362 DEGFSYFKRMKDEYGIMP--KIEHFG--CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           ++G     +    Y I    K+  F    ++D+  ++G +  A + I + L   + V W 
Sbjct: 279 EQG-----KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWN 332

Query: 418 TLLGACTIHG 427
           +LL A   HG
Sbjct: 333 SLLTAYAQHG 342


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/520 (42%), Positives = 314/520 (60%), Gaps = 20/520 (3%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKP-----DTHTYPFLLKAISKLADVRMGEQT 165
           +N  +RG A S +P  ++ L +   +    P     D  +  F LKA ++ +D     Q 
Sbjct: 117 FNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQL 176

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+   R G  + V +  +L+  YA  G V  A KVF+ M  RD+  WN+++ G A   +P
Sbjct: 177 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEP 236

Query: 226 NEALTL-------FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           N AL L       FRE+     EP+  T+V+  SACA+LG L  G   H +   +G  DN
Sbjct: 237 NLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDN 295

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           V V NAL+D YSKCG +  A  VF  ++   R  VS++  +  L+++G G++AL+LF EM
Sbjct: 296 VCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM 355

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                 P E+T++ V+  C+H G+VD+G   F  M+    + P ++H+G +VDLLGRAG 
Sbjct: 356 P-ARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGR 410

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           + +AY+ I +M  P + V+W+TLLGA  +HG+  +AE+A + L  L     GDYVLLSN+
Sbjct: 411 LAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNV 470

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA + RW++V  VR TM    VKK PG S  E+   + +F  GD+ H +  EI+  L EI
Sbjct: 471 YASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEI 530

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             ++   GY P T NV  DI EEEK+ ALSYHSEK+AIAF L++T PG  +RV+KNLR C
Sbjct: 531 GSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTC 590

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH+  KLISK Y+R I++RDR+RFH F+DGHCSCRDYW
Sbjct: 591 GDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 345/564 (61%), Gaps = 13/564 (2%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
            +Q+H    + G+     DL   +  A+++L   +  ++    +F  + + +  +WN+ I 
Sbjct: 577  RQIHGEGFKWGL-----DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIG 631

Query: 117  GYAE-SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
              A+  A+ L A++ + +M  +G +P+  T+  +L A+S  + + +G Q H++ ++    
Sbjct: 632  ALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVA 691

Query: 176  SLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFASNGKPNEALTLFRE 234
                ++N+L+  Y     ++D   +F  MSER D V+WNS+I+G+  +G  ++A+ L   
Sbjct: 692  DDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWP 751

Query: 235  MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
            M   G + DG+T  ++ SACA +  L  G   H    +  L  +V V +AL+D Y+KCG 
Sbjct: 752  MMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGK 811

Query: 295  IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
            I  A R F  M  RN  SW++++ G A +G G++AL++F  M+  G  P  VTFVGVL A
Sbjct: 812  IDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSA 871

Query: 355  CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
            CSH G+VDEG+ +FK M + YG+ P+IEHF CMVDLLGRAG VK+  ++I+ M M PN +
Sbjct: 872  CSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNIL 931

Query: 415  IWRTLLGACTIHG--HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            IWRT+LGAC      ++ + + A   L++LEP+++ +YVLLSN++A    W +V E R  
Sbjct: 932  IWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLA 991

Query: 473  MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
            M K  VKK  G S V + + V  F  GD++HP+ E+I+  L E+  K++  GYVP T+  
Sbjct: 992  MRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYA 1051

Query: 533  FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
              D+E E KE+ LSYHSEK+AIAF+L   +   P+R++KNLRVC DCH A K ISK+  R
Sbjct: 1052 LYDLELENKEELLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGR 1110

Query: 593  EIVVRDRSRFHHFKDGHCSCRDYW 616
            +I++RD +RFHHF  G CSC DYW
Sbjct: 1111 QIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 150/270 (55%), Gaps = 7/270 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  IF  + D N  T N ++ G A       A +++ +M    ++ ++ +   LL  
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLST 460

Query: 153 ISKLADV----RMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            ++ +++    R G++ H+   R+G  ++ + + N+LV+MY     + +AC VF+LM  +
Sbjct: 461 FTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D V+WNS+I+G   N +  EA++ F  M   G+ P  ++++S  S+C+ LG L LGR+ H
Sbjct: 521 DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIH 580

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA-VNGFG 326
              +K GL  +V+V+NALL  Y++   I   Q+VF +M + + VSW++ +  LA      
Sbjct: 581 GEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASV 640

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            +AL+ F EM   G+ P  VTF+ +L A S
Sbjct: 641 LQALKYFLEMMQAGWRPNRVTFINILAAVS 670



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 182/359 (50%), Gaps = 16/359 (4%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLK-QVHAFSIRHGVP-LNNP 76
           +P    SL+    +S   P    V   +   Q C S+  KL  Q+HAF  +  +P +++ 
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICK--LPCVSDM 278

Query: 77  DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136
            L   L+      S  +  AH +F  ++  N  TWN++I  Y    + + A +L+S M +
Sbjct: 279 ILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQM 338

Query: 137 SGI----KPDTHTYPFLLKAISKLAD--VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
            G+    +P+ +T   L+ A   LAD  + + EQ  +   ++GF   ++V ++LV+ +A 
Sbjct: 339 EGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFAR 398

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
           +G +  A  +F+ M +R+ V  N ++ G A   +  EA  +F+EM  + VE +  ++V L
Sbjct: 399 YGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVL 457

Query: 251 FSACAELGALALGRR----AHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREM 305
            S   E   L  G+R     H Y+++ GL D  +++ NAL++ Y KC  I  A  VF+ M
Sbjct: 458 LSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLM 517

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
             ++ VSW++++ GL  N   +EA+  F  M+  G VP   + +  L +CS  G +  G
Sbjct: 518 PSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG 576



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 135/251 (53%), Gaps = 9/251 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W+ +I GY ++  P  A  L+  +  SG+ P+       L+A  +
Sbjct: 194 ARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQ 253

Query: 156 LAD--VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAW 212
                +++G Q H+   +    S + + N L+ MY+   G + DA +VF+ +  R+ V W
Sbjct: 254 CGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTW 313

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVE----PDGYTMVSLFSACAELG--ALALGRRA 266
           NS+I+ +   G    A  LF  M  EGVE    P+ YT+ SL +A   L    L L  + 
Sbjct: 314 NSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQM 373

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
            T + K G   ++ V +AL++ +++ G++  A+ +F++M  RNAV+ + L+VGLA    G
Sbjct: 374 LTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQG 433

Query: 327 KEALELFKEME 337
           +EA ++FKEM+
Sbjct: 434 EEAAKVFKEMK 444



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           + GF   VF  N+L+++Y   G++  A K+F+ M +++LV+W+ +I+G+  N  P+EA +
Sbjct: 168 KTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACS 227

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGA--LALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           LF+ + S G+ P+ + + S   AC + G+  + LG + H ++ K+    ++ ++N L+  
Sbjct: 228 LFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 287

Query: 289 YSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG----FVP 343
           YS C G I  A RVF E++ RN+V+W++++      G    A +LF  M++ G      P
Sbjct: 288 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRP 347

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            E T   ++ A   C + D G    ++M      + +IE  G + DL   + LV     Y
Sbjct: 348 NEYTLCSLVTAA--CSLADCGLVLLEQM------LTRIEKSGFLRDLYVGSALVNGFARY 399

Query: 404 --------IQNMLMPPNAVIWRTLL-GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
                   I   +   NAV    L+ G    H     A++ +     +E       VLLS
Sbjct: 400 GLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLS 459

Query: 455 NLYAYEQRWLNVQEVRR 471
               +     N++E +R
Sbjct: 460 TFTEFS----NLKEGKR 472


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 355/622 (57%), Gaps = 29/622 (4%)

Query: 21  CRVKSLYHSTPASQENPITSV-VRKCITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPD 77
           C + +L  +     ++P   + +R   ++LQ+CA  K     +++H+    + V ++   
Sbjct: 79  CELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV- 137

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           LG  L++  V+    +     IF  V +  +F WN ++ GYA+  N   ++ L+ +M   
Sbjct: 138 LGSKLVFMYVTCG-DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMREL 196

Query: 138 GIKP-------------------DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           GI+                    ++    ++   +S+   + + EQ   + I     ++V
Sbjct: 197 GIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSE-KGLDLFEQMLLLGINTDLATMV 255

Query: 179 FVQ----NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            V+    N L+ MY+  G++  A +VFE M ER +V+W S+I G+A  G  + ++ LF E
Sbjct: 256 SVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 315

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  E + P+  TM  +  ACA L AL  G+  H ++ + G S + +V NAL+D Y KCG 
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 375

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A+ +F  + +++ VSW+ ++ G  ++G+G EA+  F EM   G  P EV+F+ +LYA
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G++DEG+ +F  M++   I PK EH+ C+VDLL RAG + +AY++I+ M + P+A 
Sbjct: 436 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           IW  LL  C I+    +AE     + +LEP+++G YVLL+N+YA  ++W  V+++R  + 
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
           +  ++K PG S +E+  +V  F  GD SHP   +I  +L +   ++K EG+ P+      
Sbjct: 556 RRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI 615

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
             ++ EKE AL  HSEKIA+AF +++  PG  VRV KNLRVC DCH   K +SK+  R+I
Sbjct: 616 KADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDI 675

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           ++RD +RFHHFKDG CSCR +W
Sbjct: 676 ILRDSNRFHHFKDGSCSCRGHW 697



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 173/385 (44%), Gaps = 37/385 (9%)

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLAD 158
           S   D  I  +N  I  + E  N   A+EL ++      KPD    TY  +L+  + L  
Sbjct: 61  SETIDCKITDYNIEICRFCELGNLRRAMELINQ----SPKPDLELRTYCSVLQLCADLKS 116

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           ++ G + HS+   N  E    + + LV MY   G +++  ++F+ ++   +  WN ++NG
Sbjct: 117 IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNG 176

Query: 219 FASNGKPNEALTLFREMASEGV--------------EPDGYTMVSLFSACAELGALALGR 264
           +A  G   E+L+LF+ M   G+              + D  +  S+ S     G    G 
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGL 236

Query: 265 RAHTYVWKVGLSDN--------VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
                +  +G++ +        + +NN LLD YSK G + +A +VF  M +R+ VSW+++
Sbjct: 237 DLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 296

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEY 375
           + G A  G    ++ LF EME     P  +T   +L AC+    ++ G       +++ +
Sbjct: 297 IAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF 356

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAE 433
            +   + +   +VD+  + G +  A   + +M+   + V W  ++    +HG+   AIA 
Sbjct: 357 SLDRHVAN--ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 413

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYA 458
                   +EP    +   +S LYA
Sbjct: 414 FNEMRNSGIEPD---EVSFISILYA 435


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/509 (40%), Positives = 310/509 (60%), Gaps = 8/509 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +N ++ GY  ++    AV L+ +M+  G+  ++ T   L+ A     ++ +G   H   +
Sbjct: 111 YNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 170

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           + GF+S V V N  + MY   G V  A K+F+ M  + L++WN++++G+A NG     L 
Sbjct: 171 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 230

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+R M   GV PD  T+V + S+CA LGA ++G      +   G + N  +NNAL++ Y+
Sbjct: 231 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYA 290

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  AQ VF  M +R  VSW+ ++ G  ++G G+ A++LFKEM   G  P    FV 
Sbjct: 291 RCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 350

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL ACSH G+ D+G  YFK MK  Y + P  EH+ CMVDLLGRAG +K+A   I++M + 
Sbjct: 351 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK 410

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           P+  +W  LLGAC IH +  +AE+A   +++LEP++ G YVLLSN+Y+       V  +R
Sbjct: 411 PDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIR 470

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M ++++KK PG S VEL  RV  F +GDR+H Q++EI+ +L E+   +  E   P  +
Sbjct: 471 IMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD 530

Query: 531 NVFADIEEEEKEDALS---YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
           N      EE  +D  +    HSEK+A+AF L+NT  G  V ++KNLR+C DCHL  K++S
Sbjct: 531 N-----REESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVS 585

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K+  R++ VRD +RFHHF++G CSC+DYW
Sbjct: 586 KIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 178/353 (50%), Gaps = 16/353 (4%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WNT +R  A+    L A+ LY +M   G +P+  T+PF LK+ + L+   +G Q H    
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEA 228
           + G     FVQ  L+ MY     V +A KVFE    S +  V +N++++G+ SN K ++A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + LFR+M  EGV  +  T++ L  AC     L LG   H    K G   +V+V N  +  
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y KCG +  AQ++F EM  +  +SW+ +V G A NG     LEL++ M++ G  P  VT 
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 349 VGVLYACSHCGMVDEGFSY-FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           VGVL +C++ G    G    FK     +   P + +   ++++  R G + +A       
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDG- 304

Query: 408 LMPPNAVI-WRTLLGACTIHGHSAIA-----EIARSTLLQLEPKHSGDYVLLS 454
            MP   ++ W  ++G   +HGH  IA     E+ RS    +EP  +    +LS
Sbjct: 305 -MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG---IEPDGTAFVCVLS 353



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 2/227 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA  +F  +    + +WN M+ GYA++      +ELY  M ++G+ PD  T   +L +
Sbjct: 194 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 253

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + L    +G +       +GF S  F+ N+L++MYA  G++  A  VF+ M ER LV+W
Sbjct: 254 CANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW 313

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G+  +G    A+ LF+EM   G+EPDG   V + SAC+  G    G      + +
Sbjct: 314 TAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR 373

Query: 273 -VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
              L       + ++D   + G +  AQ +   M  K +   W  L+
Sbjct: 374 NYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 420


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/520 (43%), Positives = 313/520 (60%), Gaps = 20/520 (3%)

Query: 111 WNTMIRGYAESANP-----LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           +N  +RG A S +P     LLA  L         + D  +  F LKA ++ +D     Q 
Sbjct: 83  FNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQL 142

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+   R G  + V +  +L+  YA  G V  A KVF+ M  RD+  WN+++ G A   +P
Sbjct: 143 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEP 202

Query: 226 NEALTL-------FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           N AL L       FRE+     EP+  T+V+  SACA+LG L  G   H +   +G  DN
Sbjct: 203 NLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDN 261

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           V V NAL+D YSKCG +  A  VF  ++   R  VS++  +  L+++G G++AL+LF EM
Sbjct: 262 VCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM 321

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                 P E+T++ V+  C+H G+VD+G   F  M+    + P ++H+G +VDLLGRAG 
Sbjct: 322 P-ARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGR 376

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           + +AY+ I +M  P + V+W+TLLGA  +HG+  +AE+A + L  L     GDYVLLSN+
Sbjct: 377 LAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNV 436

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA + RW++V  VR TM    VKK PG S  E+   + +F  GD+ H +  EI+  L EI
Sbjct: 437 YASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEI 496

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             ++   GY P T NV  DI EEEK+ ALSYHSEK+AIAF L++T PG  +RV+KNLR C
Sbjct: 497 GSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTC 556

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH+  KLISK Y+R I++RDR+RFH F+DGHCSCRDYW
Sbjct: 557 GDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 341/560 (60%), Gaps = 4/560 (0%)

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           K K+VHA++IR+G+  +N  +G  L+  + +    + Y  + F  + + ++ +W T+I G
Sbjct: 367 KGKEVHAYAIRNGLD-SNMQIGNTLV-DMYAKCCCVKYMGHAFECMHEKDLISWTTIIAG 424

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
           YA++   L A+ L+ K+ V G+  D      +L+A S L       + H    +      
Sbjct: 425 YAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD- 483

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           + +QN++V++Y   GH+  A + FE +  +D+V+W S+I     NG P EAL LF  +  
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             ++PD   ++S  SA A L +L  G+  H ++ + G      + ++L+D Y+ CG +  
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           ++++F  +++R+ + W++++    ++G G +A+ LFK+M     +P  +TF+ +LYACSH
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSH 663

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G++ EG  +F+ MK  Y + P  EH+ CMVDLL R+  +++AY +++NM + P++ IW 
Sbjct: 664 SGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWC 723

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LLGAC IH +  + E+A   LLQ + ++SG Y L+SN++A + RW +V+EVR  M    
Sbjct: 724 ALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL-KLEGYVPRTENVFADI 536
           +KK PG S +E+ N++  F   D+SHPQT++I+  LA+ TK L K  GY+ +T+ VF ++
Sbjct: 784 LKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNV 843

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            EEEK   L  HSE++A+ + L+ T  GT +R+ KNLR+C DCH   K+ S+V  R +VV
Sbjct: 844 SEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVV 903

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF+ G CSC D+W
Sbjct: 904 RDANRFHHFERGLCSCGDFW 923



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 169/324 (52%), Gaps = 14/324 (4%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSH 102
           LL +C ++K   + +Q+HA  ++         L  +L   +V +      +  A  +F  
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLK-------SHLSAFLATKLVLMYGKCGSLRDAVKVFDE 104

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + +  IF+WN ++  +  S   L A+ELY  M V G+  D  T+P +LKA   L + R+G
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFA 220
            + H VA++ G+   VFV N+L+ MY   G +  A  +F+  +M + D V+WNS+I+   
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           + G   EAL+LFR M   GV  + YT V+      +   + LG   H  V K     +V 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V NAL+  Y+KCG +  A RVF  M  R+ VSW+TL+ GL  N    +AL  F++M+  G
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 341 FVPGEVTFVGVLYACSHCGMVDEG 364
             P +V+ + ++ A    G + +G
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKG 368



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 178/334 (53%), Gaps = 21/334 (6%)

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           ++  +  +WN++I  +    N L A+ L+ +M   G+  +T+T+   L+ +   + V++G
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
              H   +++   + V+V N+L+ MYA  G ++DA +VFE M  RD V+WN++++G   N
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
              ++AL  FR+M + G +PD  ++++L +A    G L  G+  H Y  + GL  N+ + 
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIG 387

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y+KC  +      F  M +++ +SW+T++ G A N F  EA+ LF+++++ G  
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447

Query: 343 PGEVTFVGVLYACSHCGMVDEGF------SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              +    VL ACS  G+    F        FKR  D   IM +      +V++ G  G 
Sbjct: 448 VDPMMIGSVLRACS--GLKSRNFIREIHGYVFKR--DLADIMLQ----NAIVNVYGEVGH 499

Query: 397 V---KQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +   ++A+E I++     + V W +++  C  +G
Sbjct: 500 IDYARRAFESIRS----KDIVSWTSMITCCVHNG 529



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 194/386 (50%), Gaps = 20/386 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   +  +WNT++ G  ++     A+  +  M  SG KPD  +   L+ A
Sbjct: 299 MEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAA 358

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
             +  ++  G++ H+ AIRNG +S + + N+LV MYA    VK     FE M E+DL++W
Sbjct: 359 SGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISW 418

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            ++I G+A N    EA+ LFR++  +G++ D   + S+  AC+ L +    R  H YV+K
Sbjct: 419 TTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L+D + + NA+++ Y + G I  A+R F  +R ++ VSW++++     NG   EALEL
Sbjct: 479 RDLAD-IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF------GC 386
           F  ++     P  +  +  L A ++        S  K+ K+ +G + +   F        
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATAN-------LSSLKKGKEIHGFLIRKGFFLEGPIASS 590

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
           +VD+    G V+ + +   + +   + ++W +++ A  +H  G+ AIA   + T   + P
Sbjct: 591 LVDMYACCGTVENSRKMFHS-VKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIP 649

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVR 470
            H      L+ LYA     L V+  R
Sbjct: 650 DH---ITFLALLYACSHSGLMVEGKR 672



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 137/285 (48%), Gaps = 18/285 (6%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           H +  LL        +  G+Q H++ +++   +  F+   LV MY   G ++DA KVF+ 
Sbjct: 47  HAHSLLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDE 104

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           MSER + +WN+++  F S+GK  EA+ L+++M   GV  D  T  S+  AC  LG   LG
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE--MRKRNAVSWSTLVVGLA 321
              H    K G  + V V NAL+  Y KCG +  A+ +F    M K + VSW++++    
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
             G   EAL LF+ M+  G      TFV  L          E  S+ K     +G + K 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGV-------EDPSFVKLGMGIHGAVLKS 277

Query: 382 EHFG------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            HF        ++ +  + G ++ A    ++ML   + V W TLL
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAGRVFESMLC-RDYVSWNTLL 321


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 310/548 (56%), Gaps = 36/548 (6%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLADVRMGE 163
           +PN+ TWN ++ G   S     AV   + MH  G+ +PD       L A+  +  V +G+
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQ 177

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL-------------- 209
           Q H  A++ G  +   V  +L+ MY   G   +  +VF+  S  D+              
Sbjct: 178 QLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNA 237

Query: 210 ---------------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
                                V+W S++     NGK  EA+  FREM ++G EP+  T+ 
Sbjct: 238 QVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIP 297

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
            +  A A + AL  GR AH +  + G   +V V++AL+D Y+KCG +  A+ +F  M  R
Sbjct: 298 CVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSR 357

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           N VSW+ ++ G A+ G    A+ +F  M      P  VTF  +L AC+  G+ +EG  YF
Sbjct: 358 NVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYF 417

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           K M +EYG+ P++EH+ CMV LLGRAG + +AY+ I +M   P+A IW +LLG+C +HG+
Sbjct: 418 KEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGN 477

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
             +AE+A   L  LEP+++G+YVLLSN+YA ++ W  V  VR  M    +KK  G S +E
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIE 537

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           + N+V     GD SHP    I   + ++  +++  G+VP T+ V  D+EE+EK+D L+ H
Sbjct: 538 IKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVH 597

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+A  L++T+PGT +RV+KNLR+C DCH A+K IS    REI VRD +RFHHF  G
Sbjct: 598 SEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGG 657

Query: 609 HCSCRDYW 616
            CSC D+W
Sbjct: 658 KCSCGDFW 665



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 57/379 (15%)

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF---ESLVFVQN 182
           LA  L++   VSG+  D      LL A      +R+G   ++ A+ +G    +  V   +
Sbjct: 35  LARALHAVAEVSGLARDPFVASSLLHAY-----LRLGTTGNARALFDGMPRPQRTVVGWS 89

Query: 183 SLVHMYAAFGHVKDACKVFELMS-----ERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +LV  +AA G  + A ++ E M      E +++ WN +++G   +G+  +A+     M  
Sbjct: 90  ALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHG 149

Query: 238 EGV-EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG--- 293
           EG+  PD   +    SA  ++G +++G++ H Y  K G   +  V  AL+D Y KCG   
Sbjct: 150 EGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAA 209

Query: 294 ----------------------------IIIAAQRVFREMRKR----NAVSWSTLVVGLA 321
                                        +  A R+F+E   R    N VSW+++V    
Sbjct: 210 EVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCV 269

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY--FKRMKDEYGIMP 379
            NG   EA+E F+EM+  G  P  VT   VL A ++   +  G S   F   K   G + 
Sbjct: 270 QNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRK---GFLH 326

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            +     +VD+  + G VK A   I + ++  N V W  ++G   ++G +  A     ++
Sbjct: 327 DVYVSSALVDMYAKCGRVKDA-RIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSM 385

Query: 440 LQLEPKHSGDYVLLSNLYA 458
           L+   K   D V  + L A
Sbjct: 386 LKC--KQKPDMVTFTCLLA 402


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 316/519 (60%), Gaps = 18/519 (3%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKP-----DTHTYPFLLKAISKLADVRMGEQT 165
           +N  +RG A S +P  ++ L +   +    P     D  +  F LKA ++ +D     Q 
Sbjct: 67  FNAALRGLAASPHPARSLLLLAGRLLPSPSPPRPRLDALSLSFALKASARCSDGPATLQL 126

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ +R G  + V +  +L+  YA    +  A KVF+ M+ RD+ +WN+++ G A   +P
Sbjct: 127 HALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEP 186

Query: 226 NEALTLFREMASEGVE------PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           + AL LF  +     E      P+  T+++  SACA++G+L  G   H +  K+G+  NV
Sbjct: 187 SLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNV 246

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            V NAL+D YSKCG +  A  VF  +++  R  VS++T +  ++++G G +AL+LF EM 
Sbjct: 247 RVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMP 306

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P EVT++ VL  C+H G+VDEG   F  M+    + P ++H+G +VDLLGRAG +
Sbjct: 307 TC-IEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRAGRL 361

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            +AY+ I++M  P + V+W+TLLGA   HG   +AE+A + L +L     GDYVLLSN+Y
Sbjct: 362 AEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVY 421

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A + RW +V  VR TM    V+K PG S  E+   + +F  GD+ HP+ +EI+  L EI 
Sbjct: 422 ASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALGEIM 481

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
            ++   GY P T NV  DI EEEK+ ALSYHSEK+AIAF L+ T PG  +RV+KN+R+C 
Sbjct: 482 SRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIRICG 541

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           DCH+  KLISK Y R I++RDR+RFH F+DG CSC DYW
Sbjct: 542 DCHVVAKLISKAYGRAIIIRDRARFHRFEDGQCSCSDYW 580


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 326/561 (58%), Gaps = 12/561 (2%)

Query: 60  KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI 115
           + +H ++ R G    V + N  L  Y       +      A  +F  ++   + +WNTMI
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARI------ARLVFKGMRSKTVVSWNTMI 319

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            G A++     A   + KM   G  P   T   +L A + L D+  G   H +  +   +
Sbjct: 320 DGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLD 379

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S V V NSL+ MY+    V  A  +F  + E+  V WN++I G+A NG   EAL LF  M
Sbjct: 380 SNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMM 438

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            S+G++ D +T+V + +A A+       +  H    +  + +NV V+ AL+D Y+KCG I
Sbjct: 439 QSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAI 498

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+++F  M++R+ ++W+ ++ G   +G GKE L+LF EM+ G   P ++TF+ V+ AC
Sbjct: 499 KTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G V+EG   FK M+++Y + P ++H+  MVDLLGRAG +  A+ +IQ M + P   +
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISV 618

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
              +LGAC IH +  + E A   L +L+P   G +VLL+N+YA    W  V +VR  M  
Sbjct: 619 LGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMED 678

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + + KTPG S VEL N +  F+ G  +HP++++I+A L  +  ++K  GYVP  +++  D
Sbjct: 679 KGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIH-D 737

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EE+ K+  LS HSE++AIAF L+NT+PGT + + KNLRVC DCH   K IS V  REI+
Sbjct: 738 VEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREII 797

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD  RFHHFK+G CSC DYW
Sbjct: 798 VRDLRRFHHFKNGSCSCGDYW 818



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 200/375 (53%), Gaps = 6/375 (1%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           + LL+ C +SK +L Q+  F I++G    N  L +  + ++       S A  +F HV+ 
Sbjct: 51  VVLLENC-TSKKELYQILPFIIKNG--FYNEHLFQTKVISLFCKFGSNSEAARVFEHVEL 107

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
                ++ M++GYA++++   A+  + +M    ++     Y  LL+   +  D++ G + 
Sbjct: 108 KLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREI 167

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H + I NGFES +FV  +++ +YA    + +A K+FE M  +DLV+W +++ G+A NG  
Sbjct: 168 HGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHA 227

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
             AL L  +M   G +PD  T+VS+  A A++ AL +GR  H Y ++ G    VNV NAL
Sbjct: 228 KRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNAL 287

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           LD Y KCG    A+ VF+ MR +  VSW+T++ G A NG  +EA   F +M   G VP  
Sbjct: 288 LDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTR 347

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VT +GVL AC++ G ++ G+ +  ++ D+  +   +     ++ +  +   V  A     
Sbjct: 348 VTMMGVLLACANLGDLERGW-FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFN 406

Query: 406 NMLMPPNAVIWRTLL 420
           N  +    V W  ++
Sbjct: 407 N--LEKTNVTWNAMI 419


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 333/582 (57%), Gaps = 19/582 (3%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           ++  C      ++Q+H F +  G      +NN  L  Y      S    +S A  +F  +
Sbjct: 147 VITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACY------SRKGFLSEARRVFREM 200

Query: 104 QDP---NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
            +    +  +WN MI    +    + AV L+ +M   G+K D  T   +L A + + D+ 
Sbjct: 201 GEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLV 260

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGF 219
            G Q H + I++GF     V + L+ +Y+   G + +  KVFE ++  DLV WN++I+GF
Sbjct: 261 GGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGF 320

Query: 220 ASNGKPNE-ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +     +E  L  FREM   G  PD  + V + SAC+ L + +LG++ H    K  +  N
Sbjct: 321 SLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYN 380

Query: 279 -VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            V+VNNAL+  YSKCG +  A+RVF  M + N VS ++++ G A +G   E+L LF+ M 
Sbjct: 381 RVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELML 440

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P  +TF+ VL AC H G V+EG  YF  MK+ + I P+ EH+ CM+DLLGRAG +
Sbjct: 441 EKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKL 500

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           K+A   I+ M   P ++ W TLLGAC  HG+  +A  A +  L+LEP ++  YV+LSN+Y
Sbjct: 501 KEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMY 560

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A   RW     V+R M +  VKK PG S +E+  +V  F   D SHP  +EIH  + ++ 
Sbjct: 561 ASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKML 620

Query: 518 KKLKLEGYVPRTENVFA---DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           KK+K  GYVP          ++E +E+E  L YHSEK+A+AF L++T  G P+ VVKNLR
Sbjct: 621 KKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLR 680

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +C DCH A+KLIS +  REI VRD  RFH FK+GHCSCRDYW
Sbjct: 681 ICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 168/351 (47%), Gaps = 46/351 (13%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
            LL+ C + +  +  K +HA   +  +P +      + +  + S    +  A   F   Q
Sbjct: 14  NLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTL--LYSKCGSLHNAQTSFHLTQ 71

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA------------ 152
            PN+F++NT+I  YA+ +   +A  ++ ++     +PD  +Y  L+ A            
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGECGPTLR 127

Query: 153 -ISKLADVRMG--------------------EQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
              ++ ++R+G                     Q H   +  G +    V N+++  Y+  
Sbjct: 128 LFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 192 GHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
           G + +A +VF  M E   RD V+WN++I     + +  EA+ LFREM   G++ D +TM 
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC-GIIIAAQRVFREMRK 307
           S+ +A   +  L  GR+ H  + K G   N +V + L+D YSKC G ++  ++VF E+  
Sbjct: 248 SVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITA 307

Query: 308 RNAVSWSTLVVGLAV-NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            + V W+T++ G ++     ++ L  F+EM+  GF P + +FV V  ACS+
Sbjct: 308 PDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  N+L++ YA    +  A +VF+ + + D+V++N++I  +A  G+    L LF E+  
Sbjct: 75  VFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRE 134

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             +  DG+T+  + +AC +   + L R+ H +V   G     +VNNA+L  YS+ G +  
Sbjct: 135 LRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSE 192

Query: 298 AQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           A+RVFREM +   R+ VSW+ ++V    +  G EA+ LF+EM   G      T   VL A
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTA 252

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR-AGLVKQAYEYIQNMLMPPNA 413
            + C     G   F  M  + G          ++DL  + AG + +  +  +  +  P+ 
Sbjct: 253 FT-CVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEE-ITAPDL 310

Query: 414 VIWRTLLGACTIH 426
           V+W T++   +++
Sbjct: 311 VLWNTMISGFSLY 323



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           C+T      SS    KQVHA +I+  VP N   +   L+ A+ S    +  A  +F  + 
Sbjct: 351 CVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALV-AMYSKCGNVHDARRVFDTMP 409

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + N  + N+MI GYA+    + ++ L+  M    I P++ T+  +L A      V  G++
Sbjct: 410 EHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQK 469

Query: 165 THSVAI-RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
             ++   R   E      + ++ +    G +K+A ++ E M
Sbjct: 470 YFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/526 (39%), Positives = 310/526 (58%), Gaps = 5/526 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +++ ++  WNTMI GYA+      A+EL+ +M  +  KP+  T+  LL A
Sbjct: 214 LESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA 273

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVA 211
            + L D+  G   H     +G+ES + + N L++MY      +++A +VFE +  RD++ 
Sbjct: 274 CTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVIT 333

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN +I  +   G+  +AL +F++M  E V P+  T+ ++ SACA LGA   G+  H  + 
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
                 +V + N+L++ Y++CG +     VF  +R ++ VSWSTL+   A +G  +  LE
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F E+   G    +VT V  L ACSH GM+ EG   F  M  ++G+ P   HF CMVDLL
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            RAG ++ A   I +M   P+AV W +LL  C +H  +  A      L +LE +     V
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTV 573

Query: 452 -LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
            LLSN+YA   RW    +VR+T  +   +K PG S +E+ + V EF  GD+SHP+ E I 
Sbjct: 574 TLLSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIA 630

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
           A +  ++K++K  GYVP    V  +++EEEKE  L YHSEK+AIA+ L++T PGTP+ +V
Sbjct: 631 AEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIV 690

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLR C DCH A K IS++  R+IVVRD +RFHHF++G CSC+DYW
Sbjct: 691 KNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 210/429 (48%), Gaps = 30/429 (6%)

Query: 46  ITLLQVCASSKHKLKQ---VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           +  + VC+SSK  LKQ   +HA  +   +   +  LG  LI  + +    +  A   F  
Sbjct: 62  VVAIGVCSSSK-DLKQGQLLHAMILETQLLEFDIILGTALI-TMYARCRDLELARKTFDE 119

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKM---HVSGIKPDTHTYPFLLKAISKLADV 159
           +    + TWN +I GY+ + +   A+++Y  M      G+KPD  T+   L A S + D+
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G +  +  + +G+ S   VQN+L++MY+  G ++ A KVF+ +  RD++AWN++I+G+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           A  G   +AL LF+ M     +P+  T + L +AC  L  L  GR  H  V + G   ++
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 280 NVNNALLDFYSKCGIII-AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            + N LL+ Y+KC   +  A++VF  +R R+ ++W+ L+V     G  K+AL++FK+M++
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---------EYGIMPKIEHFGCMVD 389
               P E+T   VL AC+  G   +G +    +           E  +M      G + D
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
            +G    ++             + V W TL+ A   HGHS         LLQ E   + D
Sbjct: 420 TVGVFAAIRD-----------KSLVSWSTLIAAYAQHGHSRTGLEHFWELLQ-EGLAADD 467

Query: 450 YVLLSNLYA 458
             ++S L A
Sbjct: 468 VTMVSTLSA 476



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 178/338 (52%), Gaps = 5/338 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  ++ PN  +W  ++  +A + +   A+  Y +M + G++PD   +   +   S   D
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73

Query: 159 VRMGEQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           ++ G+  H++ +     E  + +  +L+ MYA    ++ A K F+ M ++ LV WN++I 
Sbjct: 74  LKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 218 GFASNGKPNEALTLFREMAS---EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           G++ NG    AL ++++M S   EG++PD  T  S   AC+ +G ++ GR         G
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASG 193

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            + +  V NAL++ YSKCG + +A++VF  ++ R+ ++W+T++ G A  G   +ALELF+
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQ 253

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M      P  VTF+G+L AC++   +++G +  +++K E+G    +     ++++  + 
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVK-EHGYESDLVIGNVLLNMYTKC 312

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
               +    +   L   + + W  L+ A   +G +  A
Sbjct: 313 SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDA 350



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 143/288 (49%), Gaps = 5/288 (1%)

Query: 46  ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           I LL  C + +   + + +H     HG   ++  +G  L+      S  +  A  +F  +
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVKEHGYE-SDLVIGNVLLNMYTKCSSSLEEARQVFERL 326

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           +  ++ TWN +I  Y +      A++++ +M +  + P+  T   +L A + L   R G+
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H++      ++ V ++NSL++MY   G + D   VF  + ++ LV+W+++I  +A +G
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-TYVWKVGLSDNVNVN 282
                L  F E+  EG+  D  TMVS  SAC+  G L  G ++  + V   GL+ +    
Sbjct: 447 HSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHF 506

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEA 329
             ++D  S+ G + AA+ +  +M    +AV+W++L+ G  ++   K A
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 119/280 (42%), Gaps = 47/280 (16%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G V DA  VF  +   + V+W  ++  FA NG   EAL  +R M  EG+ PDG  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREM 305
            V     C+    L  G+  H  + +  L + ++ +  AL+  Y++C  +  A++ F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEM---EIGGFVPGEVTFVGVLYAC------- 355
            K+  V+W+ L+ G + NG  + AL+++++M      G  P  +TF   LYAC       
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 356 ----------------------------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
                                       S CG ++     F R+K+   I      +  M
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA-----WNTM 235

Query: 388 VDLLGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACT 424
           +    + G   QA E  Q M      PN V +  LL ACT
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/552 (40%), Positives = 336/552 (60%), Gaps = 12/552 (2%)

Query: 74  NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
           ++P L   LI A  +L   +  A  +F      NIF WN +++  A + +   A+   + 
Sbjct: 106 SDPFLSTRLIEAYAALG-ALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLAD 164

Query: 134 MHVSGIKPDTHTYPFLLKAISKL------ADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187
           M   G+  D+++Y   LKA   +      A  R+ E  H+ AIR G+     V  +L+  
Sbjct: 165 MGRLGVPVDSYSYTHGLKACIAVSASHAPASARVRE-VHAHAIRRGYALHTHVATTLIDC 223

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE--PDGY 245
           YA  G V+ A  VF  M ER++V+W+++I  +A N +P +A+ LF++M +   +  P+  
Sbjct: 224 YAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSI 283

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+VS+ +ACA + AL+ G+  H Y+ + G    V+V NAL+  Y +CG +   + +F+ +
Sbjct: 284 TIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWI 343

Query: 306 -RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
             +R+ VSW++L+ G  ++GFG EA+++F+EM   GF P  +TF+ VL ACSH G+V+EG
Sbjct: 344 GHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEG 403

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
              F+ M  EYG+ P+ EH+ CMVDLLGRAG + +A E I++M + P+  +W  LLGAC 
Sbjct: 404 KMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACR 462

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IHGH   AEIA S L  LEP+++G+YVLL+++YA  +    V  ++  + +  ++K  G 
Sbjct: 463 IHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGC 522

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +E+  ++  F   D  +P  E++ A++ E   ++K +GYVP T  V  DIE EEKE  
Sbjct: 523 SWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERI 582

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L  HSEK+A+AF L+NT  G  +R+ KNLR+C DCH   K ISK   REIVVRD +RFHH
Sbjct: 583 LIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHH 642

Query: 605 FKDGHCSCRDYW 616
           F+DG CSC DYW
Sbjct: 643 FRDGVCSCGDYW 654



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
           T  ++ CI +    A +  ++++VHA +IR G  L+   +   LI     L   + YA +
Sbjct: 178 THGLKACIAVSASHAPASARVREVHAHAIRRGYALHT-HVATTLIDCYAKLGI-VRYAES 235

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKL 156
           +F+ + + N+ +W+ MI  YA++  P  A+EL+  M  S   + P++ T   +L A + +
Sbjct: 236 VFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGV 295

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSV 215
             +  G+  H+  +R GF+SLV V N+L+ MY   G ++    +F+ +   RD+V+WNS+
Sbjct: 296 NALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSL 355

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G+  +G   EA+ +F EM   G  P   T +S+  AC+  G +  G+     + + G+
Sbjct: 356 ISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMVEYGV 415

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG 324
           +        ++D   + G +  A  + R M  + +   W  L+    ++G
Sbjct: 416 TPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHG 465



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 14/264 (5%)

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           F S  F+   L+  YAA G +  A +VF+    +++  WN+++   A     +EAL    
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 234 EMASEGVEPDGYTMVSLFSACAELG-----ALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           +M   GV  D Y+      AC  +      A A  R  H +  + G + + +V   L+D 
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDC 223

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEV 346
           Y+K GI+  A+ VF  M +RN VSWS ++   A N    +A+ELFK+M       VP  +
Sbjct: 224 YAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSI 283

Query: 347 TFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
           T V VL AC+    +  G    +Y  R     G    +     ++ +  R G ++     
Sbjct: 284 TIVSVLNACAGVNALSHGKLLHAYILRR----GFDSLVSVLNALMAMYMRCGCLEVGRHI 339

Query: 404 IQNMLMPPNAVIWRTLLGACTIHG 427
            + +    + V W +L+    +HG
Sbjct: 340 FKWIGHRRDVVSWNSLISGYGMHG 363


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/512 (44%), Positives = 321/512 (62%), Gaps = 22/512 (4%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           N +I+ YA S     A  ++  M       DT ++  ++ A +   DV        V+ R
Sbjct: 48  NALIQAYAASGLVDDARRVFDGMS----HRDTVSFNSMIHAHAMSGDV--------VSAR 95

Query: 172 NGFESLV----FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
             FE +         S+V      G V  A ++FE M  RDLV+WN++++G A N +P E
Sbjct: 96  RLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVE 155

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD--NVNVNNAL 285
           AL LFR M +EG  P+  T++S  +ACA  GAL  G+  H +V +  L    +  +  AL
Sbjct: 156 ALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTAL 215

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPG 344
           LD Y+KCG +  A  VF ++R RN  +W+ ++ GLA+NG+  +AL++F++ME+    VP 
Sbjct: 216 LDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPD 275

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           EVTFVGVL ACSH G VD G  +F  ++ +YGI   +EH+ CMVDLL R+G +++A++ I
Sbjct: 276 EVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKII 335

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M M P+AV+WR LLG C +H    +AE A S   ++E   SGD+VLLSNLYA   RW 
Sbjct: 336 AGMPMKPDAVVWRALLGGCRLHKDVKMAETAIS---EMEATCSGDHVLLSNLYAAVGRWS 392

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V++VRRTM  + ++K PG S +E+ + + EF  GD+SHP   +IHA LAEI+ +++ +G
Sbjct: 393 GVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQG 452

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           YV  T  VF D+EEEEKE AL +HSEK+AIAF L+   P   +R+VKNLR CADCH   K
Sbjct: 453 YVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAK 512

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+S++Y  EIVVRDR+RFHHF +G CSC D+W
Sbjct: 513 LVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 123/267 (46%), Gaps = 7/267 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   ++ +WN M+ G A +  P+ A+ L+ +M   G  P+  T    L A
Sbjct: 122 VAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAA 181

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLV--FVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            +    +  G+  H+   R         F+  +L+ MYA  G V+ A  VF  +  R+  
Sbjct: 182 CAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTC 241

Query: 211 AWNSVINGFASNGKPNEALTLFREMA-SEGVEPDGYTMVSLFSACAELGALALGRRA-HT 268
            WN++ING A NG   +AL +FR+M     V PD  T V +  AC+  G + +GR   H 
Sbjct: 242 TWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHM 301

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGK 327
              K G+   +     ++D  ++ G +  A ++   M  K +AV W  L+ G  ++   K
Sbjct: 302 IEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVK 361

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYA 354
            A     EME      G+   +  LYA
Sbjct: 362 MAETAISEME--ATCSGDHVLLSNLYA 386



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 131/298 (43%), Gaps = 52/298 (17%)

Query: 142 DTHTYPFLLKAISKLADVRMG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           + H++ FLL+  S  A  R      H++ ++ G +    V N+L+  YAA G V DA +V
Sbjct: 7   NQHSFLFLLREASASAAARRRLPPLHALLVKLGLQPYARVHNALIQAYAASGLVDDARRV 66

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ MS RD V++NS+I+  A +G    A  LF  + S    P   T  S+ +     G +
Sbjct: 67  FDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPS----PTPVTWTSMVAGLCRAGDV 122

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           A                                   AA+R+F EM  R+ VSW+ ++ GL
Sbjct: 123 A-----------------------------------AARRLFEEMPVRDLVSWNAMMSGL 147

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-----FSYFKRMKDEY 375
           A N    EAL LF+ M   GF P   T +  L AC+  G ++ G     F   KR+   +
Sbjct: 148 AGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWW 207

Query: 376 GIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
                 E  G  ++D+  + G V+ A +     L   N   W  ++    ++G+SA A
Sbjct: 208 D-----EFLGTALLDMYAKCGAVELALDVFTK-LRSRNTCTWNAMINGLAMNGYSAKA 259


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 342/576 (59%), Gaps = 14/576 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T L++C+  +  +  KQ+H   +++G      D+   L+      S  +  A  +FS   
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSKCS-SVDEAFKLFSMAD 368

Query: 105 DP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL--KAISKLADVRM 161
              N+ TW  MI G+ ++ N   AV+L+ +M   G++P+  TY  +L  K  S L+    
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS---- 424

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H+  I+  +E +  V  +L+  Y   G+V ++ +VF  +  +D+VAW++++ G A 
Sbjct: 425 --QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVN 280
                +A+ +F ++  EGV+P+ YT  S+ +AC+   A +  G++ H    K G S+ + 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V++ALL  YSK G I +A++VF    +R+ VSW++++ G   +G  K+ALE+F+ M+  G
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
               +VTF+GVL AC+H G+V+EG  YF  M  +Y I  KIEH+ CMVDL  RAG+  +A
Sbjct: 603 LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKA 662

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + I  M  P +  IWRTLL AC +H +  + ++A   L+ L+P  +  YVLLSN++A  
Sbjct: 663 MDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
             W     VR+ M + +VKK  G S +E+ NR+F F  GD SHP ++ ++A L E++ KL
Sbjct: 723 GNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKL 782

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K  GY P T  VF D+EEE KE  LS HSE++AIA+ L+   PG P+++ KNLR+C DCH
Sbjct: 783 KDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCH 842

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             I+LIS +  R ++VRD +RFHHFK G CSC  YW
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 23/347 (6%)

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           +SL     YAH +F      +I  +N ++  ++ + +   A+ L+  +H SG+  D  T 
Sbjct: 48  ISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTL 107

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
              LK    L D  +G Q H  ++++GF   V V  SLV MY      +D   +F+ M  
Sbjct: 108 SCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI 167

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           +++V+W S+++G+A NG  +E + L  +M  EGV P+G+T  ++  A A+   +  G + 
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  + K G      V NAL+  Y K  ++  A+ VF  M  R++V+W+ ++ G A  GF 
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEY 375
            E  ++F  M + G       F   L  CS           HCG+V  G+ + + ++   
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT-- 345

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                      ++    +   V +A++         N V W  ++G 
Sbjct: 346 ----------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/574 (40%), Positives = 335/574 (58%), Gaps = 24/574 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF--SHVQDPNIFTWNTMIRG 117
           KQ HA  +   V   +P L    +  +     P +  H +     +  P    +N  +RG
Sbjct: 28  KQFHARLLSSAVLHLDPSLRARFLDRLALSDHPAALPHALLFLRSLPSPATNDFNAALRG 87

Query: 118 YAESANP-----LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            A S +P     LLA  L         + D  +  F LKA ++ +D     Q H++ +R 
Sbjct: 88  LAASPHPARSLLLLAGRLLPSPSPPPPRLDALSLSFALKASARCSDGTATLQLHALLLRL 147

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G    V +  +LV  YA  G +  A KVF+ M  RD+ +WN+++ G A   +P  AL LF
Sbjct: 148 GCTPDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALF 207

Query: 233 -------REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
                  RE+     EP+  T+V+  SACA++G+L  G   H +  K+G++ NV V NAL
Sbjct: 208 HRLVGSFRELPPRE-EPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNAL 266

Query: 286 LDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV- 342
           +D YSKCG +  A  VF  +++  R  VS++T +  ++++G G +AL LF EM    F+ 
Sbjct: 267 IDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPT--FIE 324

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P EVT++ VL  C+H G+VD+G   F  M+    ++P ++H+G +VDLLGRAG + +AY+
Sbjct: 325 PDEVTYIAVLCGCNHAGLVDDGLRVFHSMR----VLPNVKHYGAVVDLLGRAGRLAEAYD 380

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
            I +M  P + V+W+TLLGA   HG   +AE+A + L +L     GDYVLLSN+YA + R
Sbjct: 381 TIVSMPFPADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKAR 440

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W +V+ VR TM    V+K PG S  E+   + +F  GD+ HP+ +EI+  L EI  ++  
Sbjct: 441 WADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRIGE 500

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GY P T NV  DI EEEK+ ALSYHSEK+AIAF L+ T PG  +RV+KNLR C DCH+ 
Sbjct: 501 LGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCHVV 560

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KLISK Y R I++RDR+RFH F+DG CSC+DYW
Sbjct: 561 AKLISKAYGRVIIIRDRARFHQFEDGQCSCKDYW 594


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 305/523 (58%), Gaps = 34/523 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH +F  +   ++  W  MI  Y ++  PL A+ L+ KM   G   D  T   +  A+ +
Sbjct: 186 AHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQ 245

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L D RM                                +  A  VF+ M ER+ ++WNS+
Sbjct: 246 LGDGRMA-------------------------------ISRARLVFDRMEERNGISWNSM 274

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++G+  NG+P +AL+LF +M +   +P+  T + + SAC+ LG+  LGR+ H +V    +
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 334

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
             +  + NA++D Y KCG +  A  +F   E+ +R+  SW+ L+ G  V+G GKEALELF
Sbjct: 335 DIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELF 394

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M++ G  P ++TF  +L ACSH G++DEG   F  M  +  + P+++H+ CMVD+LGR
Sbjct: 395 SRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGR 453

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A+  I+ +   P+  +W  LL AC IHG++ + EIA + L QLEP+H+G YVL+
Sbjct: 454 AGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLM 513

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   +W  V+ VR+ M    +KK    S++E G  V  F   D+S P   E++  +
Sbjct: 514 SNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKV 573

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             +  ++K+ GYVP    V  D+E E+KE  L+YHSEK+A+AF ++    G P++V KNL
Sbjct: 574 ESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNL 633

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC+DCH A K IS +Y R+I+VRD +RFHHF+ G CSC DYW
Sbjct: 634 RVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 185/412 (44%), Gaps = 53/412 (12%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH----- 102
           LLQ C +S   LK +H+     G  L+ P     LI     L   +  A  +F H     
Sbjct: 31  LLQ-CCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLG-DLHSARTLFDHRHHHH 88

Query: 103 ---VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
               Q PN F  NTM+R YA +     A++LY  M   G+  +  TYPF+LK  +     
Sbjct: 89  HGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGA 148

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             GE  H   +R GF S +FV+ +LV MYA  G + DA +VF+ M  RD+V W ++I  +
Sbjct: 149 VFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
               +P +AL LFR+M  EG   D  T +S+ SA  +LG    GR A             
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD---GRMA------------- 252

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
                          I  A+ VF  M +RN +SW++++ G   NG   +AL LF +M+  
Sbjct: 253 ---------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 297

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE----HFGCMVDLLGRAG 395
              P  VT + ++ ACS+ G       +  R    + I  K++        ++D+  + G
Sbjct: 298 ECDPNPVTALIMVSACSYLGS-----KHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCG 352

Query: 396 LVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEP 444
            +  A E   N  L   +   W  L+    +HGH   A+   +R  +  +EP
Sbjct: 353 DLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 404


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 317/560 (56%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H F I+      N D   Y+   +V +   +  +  A  +F  +   ++   N +I 
Sbjct: 323 RQIHGFMIK-----ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G +       A+ L+ ++   G+  +  T   +LK+ + L       Q H++A++ GF  
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N L+  Y     + DA +VFE  S  D++A  S+I   +       A+ LF EM 
Sbjct: 438 DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +G+EPD + + SL +ACA L A   G++ H ++ K     +    NAL+  Y+KCG I 
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+  F  + +R  VSWS ++ GLA +G GK ALELF  M   G  P  +T   VL AC+
Sbjct: 558 DAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A E + +M    NA IW
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LLGA  +H    + ++A   L  LEP+ SG +VLL+N YA    W  V +VR+ M   
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDS 737

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            +KK P  S +E+ ++V  F +GD+SHP T+EI+A L E+   +   G+VP  +    D+
Sbjct: 738 NIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDL 797

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +  EKE  LS+HSE++A+AF L++T PG P+RV KNLR+C DCH+A K ISK+ SREI++
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIII 857

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF+DG CSC DYW
Sbjct: 858 RDINRFHHFRDGTCSCGDYW 877



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 4/270 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  + DP   +W++++  Y+ +  P  A++ +  M   G+  +    P +LK +  
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP- 114

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNS 214
             D R+G Q H++A+  GF S VFV N+LV MY  FG + DA +VF E  SER+ V+WN 
Sbjct: 115 --DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++ +  N +  +A+ +F EM   G++P  +    + +AC     +  GR+ H  V ++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V   NAL+D Y K G +  A  +F +M   + VSW+ L+ G  +NG    A+EL  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +M+  G VP   T   +L ACS  G  D G
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLG 322



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 190/407 (46%), Gaps = 16/407 (3%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSH 102
           ++  C  S++    +QVHA  +R G      D   +   A+V +   M     A  IF  
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGY-----DKDVFTANALVDMYMKMGRVDIASVIFEK 262

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + D ++ +WN +I G   + +   A+EL  +M  SG+ P+  T   +LKA S      +G
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H   I+   +S  ++   LV MYA    + DA KVF+ M  RDL+  N++I+G +  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ +EAL+LF E+  EG+  +  T+ ++  + A L A +  R+ H    K+G   + +V 
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVV 442

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y KC  +  A RVF E    + ++ ++++  L+    G+ A++LF EM   G  
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           P       +L AC+     ++G      + K ++  M        +V    + G ++ A 
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDA- 559

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           E   + L     V W  ++G    HGH   A+    R     + P H
Sbjct: 560 ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           VV KC+   ++ A       QVHA ++  G   ++  +   L+       F M  A  +F
Sbjct: 108 VVLKCVPDARLGA-------QVHAMAMATGFG-SDVFVANALVAMYGGFGF-MDDARRVF 158

Query: 101 SHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           +    + N  +WN ++  Y ++     A++++ +M  SGI+P    +  ++ A +   ++
Sbjct: 159 NEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G Q H++ +R G++  VF  N+LV MY   G V  A  +FE M + D+V+WN++I+G 
Sbjct: 219 EAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGC 278

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG  + A+ L  +M   G+ P+ +T+ S+  AC+  GA  LGR+ H ++ K     + 
Sbjct: 279 VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD 338

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +   L+D Y+K   +  A++VF  M  R+ +  + L+ G +  G   EAL LF E+   
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKE 398

Query: 340 GFVPGEVTFVGVL 352
           G      T   VL
Sbjct: 399 GLGVNRTTLAAVL 411



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 18/298 (6%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   H+  +++G  SL   +N L+  Y+       A + F+ + +   V+W+S++  +++
Sbjct: 23  GAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG P  A+  F  M +EGV  + + +  +     +     LG + H      G   +V V
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGFGSDVFV 137

Query: 282 NNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            NAL+  Y   G +  A+RVF E   +RNAVSW+ L+     N    +A+++F EM   G
Sbjct: 138 ANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P E  F  V+ AC+    ++ G      M    G    +     +VD+  + G V  A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 401 YEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
               +   MP + V+ W  L+  C ++GH       R+  L L+ K+SG   L+ N++
Sbjct: 257 SVIFEK--MPDSDVVSWNALISGCVLNGHD-----HRAIELLLQMKYSG---LVPNVF 304



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL  G   H  + K G     +  N L+ FYSKC     A+R F E+     VSWS+LV 
Sbjct: 19  ALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVT 76

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
             + NG  + A++ F  M   G    E     VL                 R+  +   M
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD-----------ARLGAQVHAM 125

Query: 379 PKIEHFG-------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                FG        +V + G  G +  A           NAV W  L+ A
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 318/550 (57%), Gaps = 9/550 (1%)

Query: 76  PDLGKY--LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSK 133
           PD+  +  LI A+      +  A  +F  +   + F W+ ++ GY     P  A+ LY +
Sbjct: 92  PDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRR 151

Query: 134 MHV---SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL---VFVQNSLVHM 187
           M     +    +  T    L A +     R G + H   +R G ++      + ++L  M
Sbjct: 152 MQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADM 211

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYT 246
           YA  G V DA +VF+ M  RD V+W +++  +   G+  E   LF  M  + GV P+ +T
Sbjct: 212 YAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFT 271

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
              +  ACA+    + GR+ H  + K G  D+    +ALL  YSKCG + +A RVF  M 
Sbjct: 272 YAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMA 331

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           K + VSW+ ++ G A NG  +EAL  F      G  P  VTFVGVL AC+H G+VD+G  
Sbjct: 332 KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLE 391

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
            F  +K++Y I    +H+ C++DLL R+G  ++A + I NM + PN  +W +LLG C IH
Sbjct: 392 IFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIH 451

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
            +  +A  A   L ++EP++   YV L+N+YA    +  V++VRR M  + + K P  S 
Sbjct: 452 KNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSW 511

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           +E+G RV  F +GD+SHP+ +EI+A+L ++  K+  EGYV   E V  D+E+E+KE  + 
Sbjct: 512 IEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIG 571

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
           YHSE++A+AF ++ T  G+P++V KNLR+C DCH AIKLIS++  R+I+VRD +RFHHFK
Sbjct: 572 YHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFK 631

Query: 607 DGHCSCRDYW 616
           DG CSCRDYW
Sbjct: 632 DGICSCRDYW 641


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 317/560 (56%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H F I+      N D   Y+   +V +   +  +  A  +F  +   ++   N +I 
Sbjct: 323 RQIHGFMIK-----ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G +       A+ L+ ++   G+  +  T   +LK+ + L       Q H++A++ GF  
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N L+  Y     + DA +VFE  S  D++A  S+I   +       A+ LF EM 
Sbjct: 438 DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +G+EPD + + SL +ACA L A   G++ H ++ K     +    NAL+  Y+KCG I 
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+  F  + +R  VSWS ++ GLA +G GK ALELF  M   G  P  +T   VL AC+
Sbjct: 558 DAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A E + +M    NA IW
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LLGA  +H    + ++A   L  LEP+ SG +VLL+N YA    W  V +VR+ M   
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDS 737

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            +KK P  S +E+ ++V  F +GD+SHP T+EI+A L E+   +   G+VP  +    D+
Sbjct: 738 NIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDL 797

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +  EKE  LS+HSE++A+AF L++T PG P+RV KNLR+C DCH+A K ISK+ SREI++
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIII 857

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF+DG CSC DYW
Sbjct: 858 RDINRFHHFRDGTCSCGDYW 877



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 145/270 (53%), Gaps = 4/270 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + DP   +W++++  Y+ +  P  A++ +  M   G+  +    P +LK +  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP- 114

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNS 214
             D R+G Q H++A+  GF S VFV N+LV MY  FG + DA +VF E  SER+ V+WN 
Sbjct: 115 --DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++ +  N +  +A+ +F EM   G++P  +    + +AC     +  GR+ H  V ++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V   NAL+D Y K G +  A  +F +M   + VSW+ L+ G  +NG    A+EL  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           +M+  G VP   T   +L ACS  G  D G
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLG 322



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 190/407 (46%), Gaps = 16/407 (3%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSH 102
           ++  C  S++    +QVHA  +R G      D   +   A+V +   M     A  IF  
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGY-----DKDVFTANALVDMYMKMGRVDIASVIFEK 262

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + D ++ +WN +I G   + +   A+EL  +M  SG+ P+  T   +LKA S      +G
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H   I+   +S  ++   LV MYA    + DA KVF+ M  RDL+  N++I+G +  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ +EAL+LF E+  EG+  +  T+ ++  + A L A +  R+ H    K+G   + +V 
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVV 442

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y KC  +  A RVF E    + ++ ++++  L+    G+ A++LF EM   G  
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           P       +L AC+     ++G      + K ++  M        +V    + G ++ A 
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDA- 559

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           E   + L     V W  ++G    HGH   A+    R     + P H
Sbjct: 560 ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           VV KC+   ++ A       QVHA ++  G   ++  +   L+       F M  A  +F
Sbjct: 108 VVLKCVPDARLGA-------QVHAMAMATGFG-SDVFVANALVAMYGGFGF-MDDARRVF 158

Query: 101 SHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           +    + N  +WN ++  Y ++     A++++ +M  SGI+P    +  ++ A +   ++
Sbjct: 159 NEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G Q H++ +R G++  VF  N+LV MY   G V  A  +FE M + D+V+WN++I+G 
Sbjct: 219 EAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGC 278

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG  + A+ L  +M   G+ P+ +T+ S+  AC+  GA  LGR+ H ++ K     + 
Sbjct: 279 VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD 338

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +   L+D Y+K   +  A++VF  M  R+ +  + L+ G +  G   EAL LF E+   
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKE 398

Query: 340 GFVPGEVTFVGVL 352
           G      T   VL
Sbjct: 399 GLGVNRTTLAAVL 411



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 18/298 (6%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   H+  +++G  SL   +N L+  Y+       A +VF+ + +   V+W+S++  +++
Sbjct: 23  GAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG P  A+  F  M +EGV  + + +  +     +     LG + H      G   +V V
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGFGSDVFV 137

Query: 282 NNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            NAL+  Y   G +  A+RVF E   +RNAVSW+ L+     N    +A+++F EM   G
Sbjct: 138 ANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P E  F  V+ AC+    ++ G      M    G    +     +VD+  + G V  A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 401 YEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
               +   MP + V+ W  L+  C ++GH       R+  L L+ K+SG   L+ N++
Sbjct: 257 SVIFEK--MPDSDVVSWNALISGCVLNGHD-----HRAIELLLQMKYSG---LVPNVF 304



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 63/171 (36%), Gaps = 20/171 (11%)

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL  G   H  + K G     +  N L+ FYSKC     A+RVF E+     VSWS+LV 
Sbjct: 19  ALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
             + NG  + A++ F  M   G    E     VL                 R+  +   M
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD-----------ARLGAQVHAM 125

Query: 379 PKIEHFG-------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                FG        +V + G  G +  A           NAV W  L+ A
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 321/575 (55%), Gaps = 10/575 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           ++L+ CA +      +Q+H F I+      N D   Y+   +V +   +  +  A  +F 
Sbjct: 308 SILKACAGAGAFDLGRQIHGFMIK-----ANADSDDYIGVGLVDMYAKNHFLDDAMKVFD 362

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++  WN +I G +       A  ++  +   G+  +  T   +LK+ + L     
Sbjct: 363 WMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASA 422

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H++A + GF     V N L+  Y     + DA +VFE  S  D++A  S+I   + 
Sbjct: 423 TRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQ 482

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                 A+ LF EM  +G+EPD + + SL +ACA L A   G++ H ++ K     +   
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL+  Y+KCG I  A+  F  + +R  VSWS ++ GLA +G GK ALELF  M   G 
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +T   VL AC+H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E + +M    NA +W  LLGA  +H    + ++A   L  LEP+ SG +VLL+N YA   
Sbjct: 663 ELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSG 722

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W  V +VR+ M    +KK P  S VE+ ++V  F +GD+SHP T+EI++ L E+   + 
Sbjct: 723 MWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMS 782

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GY+P  +    D++  EKE  LS+HSE++A+AF L++T PG P+RV KNLR+C DCH+
Sbjct: 783 KAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHM 842

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A K IS + SREI++RD +RFHHF+DG CSC DYW
Sbjct: 843 AFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 173/339 (51%), Gaps = 19/339 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + DP   +W++++  Y+ +  P  A++ +  M   G+  +    P +LK +  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP- 114

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNS 214
             D ++G Q H++A+  GF S VFV N+LV MY  FG + DA +VF E  SER+ V+WN 
Sbjct: 115 --DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++ +  N +  +A+ +F EM   G++P  +    + +AC     +  GR+ H  V ++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG 232

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V   NAL+D Y K G +  A  +F +M   + VSW+ L+ G  +NG    A+EL  
Sbjct: 233 YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI-----EHFGC-MV 388
           +M+  G VP       +L AC+  G  D G       +  +G M K      ++ G  +V
Sbjct: 293 QMKSSGLVPNVFMLSSILKACAGAGAFDLG-------RQIHGFMIKANADSDDYIGVGLV 345

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           D+  +   +  A + + + +   + ++W  L+  C+ HG
Sbjct: 346 DMYAKNHFLDDAMK-VFDWMSHRDLILWNALISGCS-HG 382



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 189/407 (46%), Gaps = 16/407 (3%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSH 102
           ++  C  S++    +QVHA  +R G   +      +   A+V +   M     A  IF  
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKD-----VFTANALVDMYVKMGRVDIASVIFEK 262

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + D ++ +WN +I G   + +   A+EL  +M  SG+ P+      +LKA +      +G
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 322

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H   I+   +S  ++   LV MYA    + DA KVF+ MS RDL+ WN++I+G +  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ +EA ++F  +  EG+  +  T+ ++  + A L A +  R+ H    K+G   + +V 
Sbjct: 383 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 442

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y KC  +  A RVF E    + ++ ++++  L+    G+ A++LF EM   G  
Sbjct: 443 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           P       +L AC+     ++G      + K ++  M        +V    + G ++ A 
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDA- 559

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           E   + L     V W  ++G    HGH   A+    R     + P H
Sbjct: 560 ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           VV KC+   Q+ A       QVHA ++  G   ++  +   L+       F M  A  +F
Sbjct: 108 VVLKCVPDAQLGA-------QVHAMAMATGFG-SDVFVANALVAMYGGFGF-MDDARRVF 158

Query: 101 SHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
                + N  +WN ++  Y ++     A++++ +M  SGI+P    +  ++ A +   ++
Sbjct: 159 DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G Q H++ +R G+E  VF  N+LV MY   G V  A  +FE M + D+V+WN++I+G 
Sbjct: 219 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 278

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG  + A+ L  +M S G+ P+ + + S+  ACA  GA  LGR+ H ++ K     + 
Sbjct: 279 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 338

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +   L+D Y+K   +  A +VF  M  R+ + W+ L+ G +  G   EA  +F  +   
Sbjct: 339 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 398

Query: 340 GFVPGEVTFVGVL 352
           G      T   VL
Sbjct: 399 GLGVNRTTLAAVL 411



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 151/339 (44%), Gaps = 33/339 (9%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   H+  +++GF  L  ++N L+  Y+       A +VF+ + +   V+W+S++  +++
Sbjct: 23  GAHLHANLLKSGF--LASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG P  A+  F  M +EGV  + + +  +     +     LG + H      G   +V V
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVFV 137

Query: 282 NNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            NAL+  Y   G +  A+RVF E   +RNAVSW+ L+     N    +A+++F EM   G
Sbjct: 138 ANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P E  F  V+ AC+    +D G      M    G    +     +VD+  + G V  A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA 256

Query: 401 YEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
               +   MP + V+ W  L+  C ++GH       R+  L L+ K SG   L+ N++  
Sbjct: 257 SVIFEK--MPDSDVVSWNALISGCVLNGHD-----HRAIELLLQMKSSG---LVPNVF-- 304

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498
                        M+   +K   G    +LG ++  F +
Sbjct: 305 -------------MLSSILKACAGAGAFDLGRQIHGFMI 330



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 64/164 (39%), Gaps = 6/164 (3%)

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           AL  G   H  + K G     ++ N L+ FYSKC     A+RVF E+     VSWS+LV 
Sbjct: 19  ALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378
             + NG  + A++ F  M   G    E     VL     C    +  +    M    G  
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVL----KCVPDAQLGAQVHAMAMATGFG 132

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
             +     +V + G  G +  A           NAV W  L+ A
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 321/575 (55%), Gaps = 10/575 (1%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           ++L+ CA +      +Q+H F I+      N D   Y+   +V +   +  +  A  +F 
Sbjct: 215 SILKACAGAGAFDLGRQIHGFMIK-----ANADSDDYIGVGLVDMYAKNHFLDDAMKVFD 269

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            +   ++  WN +I G +       A  ++  +   G+  +  T   +LK+ + L     
Sbjct: 270 WMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASA 329

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H++A + GF     V N L+  Y     + DA +VFE  S  D++A  S+I   + 
Sbjct: 330 TRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQ 389

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
                 A+ LF EM  +G+EPD + + SL +ACA L A   G++ H ++ K     +   
Sbjct: 390 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 449

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL+  Y+KCG I  A+  F  + +R  VSWS ++ GLA +G GK ALELF  M   G 
Sbjct: 450 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 509

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +T   VL AC+H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A 
Sbjct: 510 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 569

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           E + +M    NA +W  LLGA  +H    + ++A   L  LEP+ SG +VLL+N YA   
Sbjct: 570 ELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSG 629

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
            W  V +VR+ M    +KK P  S VE+ ++V  F +GD+SHP T+EI++ L E+   + 
Sbjct: 630 MWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMS 689

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GY+P  +    D++  EKE  LS+HSE++A+AF L++T PG P+RV KNLR+C DCH+
Sbjct: 690 KAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHM 749

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A K IS + SREI++RD +RFHHF+DG CSC DYW
Sbjct: 750 AFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 189/407 (46%), Gaps = 16/407 (3%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSH 102
           ++  C  S++    +QVHA  +R G   +      +   A+V +   M     A  IF  
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKD-----VFTANALVDMYVKMGRVDIASVIFEK 169

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + D ++ +WN +I G   + +   A+EL  +M  SG+ P+      +LKA +      +G
Sbjct: 170 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 229

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q H   I+   +S  ++   LV MYA    + DA KVF+ MS RDL+ WN++I+G +  
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G+ +EA ++F  +  EG+  +  T+ ++  + A L A +  R+ H    K+G   + +V 
Sbjct: 290 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 349

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N L+D Y KC  +  A RVF E    + ++ ++++  L+    G+ A++LF EM   G  
Sbjct: 350 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 409

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
           P       +L AC+     ++G      + K ++  M        +V    + G ++ A 
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDA- 466

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           E   + L     V W  ++G    HGH   A+    R     + P H
Sbjct: 467 ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 513



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 153/301 (50%), Gaps = 19/301 (6%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M   G+  +    P +LK +    D ++G Q H++A+  GF S VFV N+LV MY  FG 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVP---DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 194 VKDACKVF-ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
           + DA +VF E  SER+ V+WN +++ +  N +  +A+ +F EM   G++P  +    + +
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           AC     +  GR+ H  V ++G   +V   NAL+D Y K G +  A  +F +M   + VS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ L+ G  +NG    A+EL  +M+  G VP       +L AC+  G  D G       +
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG-------R 230

Query: 373 DEYGIMPKI-----EHFGC-MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
             +G M K      ++ G  +VD+  +   +  A + + + +   + ++W  L+  C+ H
Sbjct: 231 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK-VFDWMSHRDLILWNALISGCS-H 288

Query: 427 G 427
           G
Sbjct: 289 G 289



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           VV KC+   Q+ A       QVHA ++  G   ++  +   L+       F M  A  +F
Sbjct: 15  VVLKCVPDAQLGA-------QVHAMAMATGFG-SDVFVANALVAMYGGFGF-MDDARRVF 65

Query: 101 SHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
                + N  +WN ++  Y ++     A++++ +M  SGI+P    +  ++ A +   ++
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G Q H++ +R G+E  VF  N+LV MY   G V  A  +FE M + D+V+WN++I+G 
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG  + A+ L  +M S G+ P+ + + S+  ACA  GA  LGR+ H ++ K     + 
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 245

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +   L+D Y+K   +  A +VF  M  R+ + W+ L+ G +  G   EA  +F  +   
Sbjct: 246 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 305

Query: 340 GFVPGEVTFVGVL 352
           G      T   VL
Sbjct: 306 GLGVNRTTLAAVL 318


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 325/556 (58%), Gaps = 3/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+HA  ++ G+    P +   LI        P+ ++  +F      +  TW+++I  +A+
Sbjct: 46  QLHAHILKFGLQ-TIPLVSHNLINLYSKTQLPL-FSLQVFDETPKKSSTTWSSVISAFAQ 103

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +  PLLA++ + +M   G++PD H YP   KA   L    +G+  H +A++ G+   VFV
Sbjct: 104 NEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFV 163

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            +SLV MYA  G + DA  +F+ M ER++V+W+ +I G+A      EALTLF++   E V
Sbjct: 164 GSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDV 223

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           + + +T  S+   C+    L LG+  H    K+    +  V +AL+  YSKCG+I  A +
Sbjct: 224 DVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF E+  RN   W+++++  A +   +    LF+EM   G  P  ++F+ VLYACSH G+
Sbjct: 284 VFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGL 343

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V++G  YF  M+D YGI P+ EH+  +VDLLGRAG +++A   I+ M M P   +W  LL
Sbjct: 344 VEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALL 402

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C IH  + +A      +L+++   SG +VLLSN YA   R+     +R+ +    VKK
Sbjct: 403 TGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKK 462

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
             G S VE GN+V  F  GDRSH +  EI+  L E+ ++++  GYV  T  V   ++ EE
Sbjct: 463 ETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEE 522

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           K + + YHSE++AIAF L+   PG P+RV+KNLRVC DCH AIK +SK   R ++VRD +
Sbjct: 523 KNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNN 582

Query: 601 RFHHFKDGHCSCRDYW 616
           RFH F+DG CSC DYW
Sbjct: 583 RFHRFEDGKCSCGDYW 598



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 14/287 (4%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL + ++   +R G Q H+  ++ G +++  V ++L+++Y+       + +VF+   ++ 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+SVI+ FA N  P  AL  FR M ++GV PD +   S   AC  L    +G+  H 
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              K G   +V V ++L+D Y+KCG I  A+ +F EM +RN VSWS ++ G A    G E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH----- 383
           AL LFK+  I      + TF  V+  CS    ++ G       K  +G+  K+       
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-------KLIHGLCLKMSFDSSSF 263

Query: 384 -FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               ++ L  + G+++ AY+ + + +   N  +W ++L AC  H H+
Sbjct: 264 VGSALISLYSKCGVIEGAYQ-VFDEIPTRNLGLWNSMLIACAQHAHT 309


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 330/575 (57%), Gaps = 6/575 (1%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + LL+ CA SK  L  K+VH+  ++ G   +   L   L+  +      ++ A ++F  +
Sbjct: 28  VLLLKKCADSKALLEGKRVHSCLVKDGYASDR--LIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 104 QDPN--IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           Q+ N  + +WN +I  Y ++     A+ L+  M + G+  +  T    + A + L     
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   H++A+    ES   V  SLV+M+    +V  A  VF+ +  ++LV WN+++  ++ 
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N +  +A+ +FR M  EGV+PD  T +++  ACA L A   GR  H  +   G+  +V +
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             A++ FY KCG +  A+ +F  + K+N V+WS ++   A NG+  EA+EL+ EM  GG 
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
               +TF+G+L+ACSH G   +G  YF  M  ++G++P  EH+  ++DLLGR+G ++ + 
Sbjct: 326 EVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSE 385

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
           + I +M   P++  W  LLGAC +HG           + +L+P+ SG Y+LLSNLY+   
Sbjct: 386 DLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTG 445

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           R    +  R+ M    + K PG S +E+ +RV EF    + HPQ   IHA +  +  ++K
Sbjct: 446 RMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVK 505

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GYV     V  D+EEEEKE  L YHSE++AIAF L++T PGT + +VKNLRVC DCH 
Sbjct: 506 EAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHA 565

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A+K ISKV  R+IVVRD  RFHHF++G CSC DYW
Sbjct: 566 AVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 10/294 (3%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           + +  TY  LLK  +    +  G++ HS  +++G+ S   + N L+ MY   G + +A  
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 200 VFELMSER--DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           VF+ + E+  D+++WN +I  +  NG   EAL LF+ M  EGV  +  T+++   ACA L
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            +   GR  H       L  +  V  +L++ + KC  + AA+ VF  + ++N V+W+ +V
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-- 375
              + N   K+A+++F+ M++ G  P  VTF+ ++ AC+      EG    + + D+   
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG----RMVHDDITA 256

Query: 376 -GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            GI   +     ++   G+ G +  A   I + L   N V W  +L A   +G+
Sbjct: 257 SGIPMDVALGTAVMHFYGKCGRLDNA-RAIFDSLGKKNTVTWSAILAAYAQNGY 309


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 320/561 (57%), Gaps = 8/561 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLG--KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQVHA +++ G  +++  +G   + +Y+   L+     A  +F  + + NI TWN  +  
Sbjct: 128 KQVHALAVKAG-QISDVFVGCSAFDMYSKAGLT---EEARKMFDEMPERNIATWNAYLSN 183

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
                    A+  + +    G +P+  T+   L A +  + +R+G Q H   +++GFE+ 
Sbjct: 184 SVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEAD 243

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V V N L+  Y     V  +  +F  +S+ + V+W S+I  +  N +  +A  +F     
Sbjct: 244 VSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARK 303

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EG+EP  + + S+ SACA L  L +G+  HT   K  +  N+ V +AL+D Y KCG I  
Sbjct: 304 EGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIED 363

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG--FVPGEVTFVGVLYAC 355
           A+R F EM +RN V+W+ ++ G A  G    A+ LF EM  G     P  VTFV VL AC
Sbjct: 364 AERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSAC 423

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           S  G V+ G   F+ M+  YGI P  EH+ C+VDLLGRAG+V+QAY++I+ M + P   +
Sbjct: 424 SRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSV 483

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGA  + G S + ++A   L +L+P  SG++VLLSN++A   RW     VR+ M  
Sbjct: 484 WGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKD 543

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             +KK  G S +  GN V  F   D SH +  EI AMLA++  +++  GY+P T     D
Sbjct: 544 VGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFD 603

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EEEEK   + YHSEKIA+AF L++   G P+R+ KNLR+C DCH AIK IS +  REI+
Sbjct: 604 LEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREII 663

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD + FH F+D  CSCRDYW
Sbjct: 664 VRDNNLFHRFRDNQCSCRDYW 684



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 173/356 (48%), Gaps = 15/356 (4%)

Query: 90  SFPMSYAHNIFSHVQDPN-------------IFTWNTMIRGYAESANPLLAVELYSKMHV 136
           SF  ++  N++S +  PN             + TW  +I G  ++     A+  +S M  
Sbjct: 42  SFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRR 101

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
             I+P+  T+P   KA   L    +G+Q H++A++ G  S VFV  S   MY+  G  ++
Sbjct: 102 DSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEE 161

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A K+F+ M ER++  WN+ ++     G+ ++ALT F E   EG EP+  T  +  +ACA 
Sbjct: 162 ARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAG 221

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
              L LGR+ H +V + G   +V+V N L+DFY KC  +  ++ +F  + K N VSW ++
Sbjct: 222 ASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSM 281

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           +V    N   ++A  +F      G  P +     VL AC+   +++ G S    +  +  
Sbjct: 282 IVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKS-VHTLAVKAC 340

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           ++  I     +VD+ G+ G ++ A      M    N V W  ++G     G + +A
Sbjct: 341 VVGNIFVGSALVDMYGKCGSIEDAERAFDEM-PERNLVTWNAMIGGYAHQGQADMA 395


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/510 (40%), Positives = 310/510 (60%), Gaps = 1/510 (0%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           ++ +W ++I GYA++  P  A+ L   M     KP+  T+  LLKA    A   +GEQ H
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 64

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           ++ ++  +   V+V ++L+ MYA  G +  A  VF+ +  ++ V+WN++I GFA  G   
Sbjct: 65  ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 124

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
             L +F EM   G E   +T  S+FSA A +GAL  G+  H ++ K G   +  V N +L
Sbjct: 125 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 184

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           D Y+K G +I A++VF  + K++ V+W++++   A  G G+EA+  F+EM   G    ++
Sbjct: 185 DMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 244

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TF+ +L ACSH G+V EG  YF  MK E+ + P+I+H+  +VDLLGRAGL+  A  +I  
Sbjct: 245 TFLSILTACSHGGLVKEGKQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 303

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M M P A +W  LLG+C +H ++ I + A   + +L+P  +G  VLL N+YA   +W   
Sbjct: 304 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 363

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             VR+ M    VKK P  S VE+ N V  F   D +HP++EEI+    EI+ +++  GYV
Sbjct: 364 ARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 423

Query: 527 PRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
           P T+ V   ++E+E++  L YHSEKIA+AF L+N   G  +R++KN+R+C DCH A + I
Sbjct: 424 PNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYI 483

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           SKV+ REIVVRD +RFHHF  G CSC DYW
Sbjct: 484 SKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           MS RD+ +W S+I G+A N  P+EAL L   M     +P+G+T  SL  A     +  +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
            + H    K    D+V V +ALLD Y++CG +  A  VF ++  +N VSW+ L+ G A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           G G+  L +F EM+  GF     T+  V  A +  G +++G
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 161



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 3/259 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+HA ++++    ++  +G  L+  + +    M  A  +F  ++  N  +WN +I G+A
Sbjct: 61  EQIHALTVKYDWH-DDVYVGSALL-DMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 118

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
              +    + ++++M  +G +    TY  +  AI+ +  +  G+  H+  I++G     F
Sbjct: 119 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 178

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+++ MYA  G + DA KVF+ + ++DLV WNS++  FA  G   EA+T F EM   G
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 238

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V  +  T +S+ +AC+  G +  G++    + +  L   ++    ++D   + G++  A 
Sbjct: 239 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDAL 298

Query: 300 R-VFREMRKRNAVSWSTLV 317
             +F+   K  A  W  L+
Sbjct: 299 VFIFKMPMKPTAAVWGALL 317


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/597 (36%), Positives = 349/597 (58%), Gaps = 17/597 (2%)

Query: 26  LYHSTPAS----QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           L+H + AS     ++  ++V++ C  L Q+  +     +Q+H+  ++HG   +   +   
Sbjct: 289 LFHDSRASMAKLSQSTYSTVIKLCANLKQLALA-----RQLHSCVLKHGFHSDGNVMTA- 342

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
            I    S    +  A NIF  +    N+ +W  MI G  ++A+  LA  L+S+M    +K
Sbjct: 343 -IMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVK 401

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P+  TY  +L A   +    +  Q H+  I+  ++    V  +L+  Y+  G+ ++A  +
Sbjct: 402 PNEFTYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSI 457

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE-LGA 259
           F+++  +D+VAW+++++ ++  G  + A  +F +M+ +G++P+ +T+ S   ACA     
Sbjct: 458 FKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAG 517

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           +  GR+ H    K    D + V +AL+  Y++ G I +A+ VF     R+ VSW++++ G
Sbjct: 518 IDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISG 577

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            A +G+ KEAL+ F++ME  G      TF+ V+  C+H G+V EG  YF  M  ++ I P
Sbjct: 578 YAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISP 637

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            +EH+ CMVDL  RAG + +    I+ M  P  A++WRTLLGAC +H +  + ++A   L
Sbjct: 638 TMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKL 697

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           L LEP  S  YVLLSN+YA   RW    EVR+ M  ++VKK  G S +++ N+V  F   
Sbjct: 698 LLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIAC 757

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           D+SHP +E+I+A L  +T +LK EGY P T  V  DI EE+KE  L  HSE++A+AF L+
Sbjct: 758 DKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLI 817

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            T P TP+++VKNLRVC DCH+ +K++S +  REI++RD SRFHHF  G CSC D+W
Sbjct: 818 ATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 28/289 (9%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           +LK    + D   GEQ H + ++ GF+ + V V  +LV MY   G V+D   VFE M +R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           ++V W S++ G+      ++ + LF  M +EGV P+ +T  S+ SA A  GA+ LGRR H
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
               K G    V V N+L++ YSKCG++  A+ VFR+M  R+ VSW+TL+ GL +N    
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL 284

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEYG 376
           EAL+LF +         + T+  V+  C+           H  ++  GF        +  
Sbjct: 285 EALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGF------HSDGN 338

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP--PNAVIWRTLLGAC 423
           +M  I      +D   + G +  A+     +LMP   N V W  ++G C
Sbjct: 339 VMTAI------MDAYSKCGELDDAFNIF--LLMPGSQNVVSWTAMIGGC 379



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L+VC     ++  +Q+H   ++ G       +G  L+   +     +     +F  +  
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCG-GVEDGRVVFEGMPK 163

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+ TW +++ GY +       + L+ +M   G+ P+  T+  +L A++    V +G + 
Sbjct: 164 RNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRV 223

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ +++ G  S VFV NSL++MY+  G V++A  VF  M  RD+V+WN+++ G   N   
Sbjct: 224 HAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQ 283

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL LF +  +   +    T  ++   CA L  LAL R+ H+ V K G   + NV  A+
Sbjct: 284 LEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAI 343

Query: 286 LDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +D YSKCG +  A  +F  M   +N VSW+ ++ G   N     A  LF  M      P 
Sbjct: 344 MDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPN 403

Query: 345 EVTFVGVLYA 354
           E T+  VL A
Sbjct: 404 EFTYSTVLTA 413


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/516 (40%), Positives = 308/516 (59%), Gaps = 39/516 (7%)

Query: 140 KPDTHTYPFLLKAISKLADVR-------MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192
           + + H++ FLL +IS   D         +G   H++A++ G    ++V+N+L H Y   G
Sbjct: 120 RRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCG 179

Query: 193 HV--------------------------------KDACKVFELMSERDLVAWNSVINGFA 220
            V                                + A +VFE M  RD V+W++++ G+ 
Sbjct: 180 DVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYV 239

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
             G+ + AL +FR+M  +GV  +   +V+  SA A++G L  GR  H  V + G+  +VN
Sbjct: 240 KEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVN 299

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V  AL+D +SKCG +  A+ VF  M +R+  +W+ ++ GLA +G G++A+ELF      G
Sbjct: 300 VGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEG 359

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P ++TFVGVL ACS CG+V EG  YFK M D+Y I P++EH+GCMVDLLGRAGLV +A
Sbjct: 360 LWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEA 419

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            E I+ M + P+ V+W T+L AC  H    +     + L++LEP H G YVLL+++YA  
Sbjct: 420 IELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKA 479

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
           ++W  V+EVR+ M      K+ G SL+E    + +F +GD  H  + +I+ ML  I ++L
Sbjct: 480 KKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRL 539

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
              GYVP   +V  DI +EEK  A+  HSE++AIA+  + T  G+P+R+VKNL+VC DCH
Sbjct: 540 ADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCH 599

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              K+++KV++REI+VRD SRFHH K+G CSC DYW
Sbjct: 600 EFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 33/276 (11%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +  +W+T++ GY +     +A+ ++  M   G++ +       L A ++
Sbjct: 216 AREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQ 275

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  +  G   H V  R G    V V  +LV M++  G V  A +VF+ M  RD+ AWN++
Sbjct: 276 MGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAM 335

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G AS+G   +A+ LF     EG+ P   T V + +AC+  G +A GRR          
Sbjct: 336 ICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRR---------- 385

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                        Y K  +++   R+  EM       +  +V  L   G   EA+EL + 
Sbjct: 386 -------------YFK--LMVDKYRIEPEMEH-----YGCMVDLLGRAGLVSEAIELIEG 425

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           M I    P  V +  VL AC    +VD G +   ++
Sbjct: 426 MHIA---PDPVLWGTVLSACKTHNLVDLGITVGNKL 458



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           VH    R G+P++  ++G  L+  + S    ++ A  +F  +   ++F WN MI G A  
Sbjct: 285 VHEVVQRTGMPVS-VNVGAALV-DMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASH 342

Query: 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI-RNGFESLVFV 180
                AVEL+ +    G+ P   T+  +L A S+   V  G +   + + +   E  +  
Sbjct: 343 GLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEH 402

Query: 181 QNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
              +V +    G V +A ++ E M    D V W +V++   ++   +  +T+  ++    
Sbjct: 403 YGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELE 462

Query: 240 VEPDGY 245
              DG+
Sbjct: 463 PAHDGH 468


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/511 (42%), Positives = 304/511 (59%), Gaps = 22/511 (4%)

Query: 123 NPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN 182
           NP LA+ L+  +  SG  PD   Y   L   ++  D R   Q HS A + G  S   V N
Sbjct: 58  NPQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCN 117

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242
            L+H YA  G + DA KVF+   E D VAWNS++ G+A+ G  N     F  M +     
Sbjct: 118 GLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQAR---- 173

Query: 243 DGYTMVSLFSACAELG----ALALGR-----------RAHTYVWKVGLSDNVNVNNALLD 287
           D  +  ++ + C E G    A+A+ R           R   +  K G+     +++AL++
Sbjct: 174 DTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGK-GIEVEERLSSALIN 232

Query: 288 FYSKCGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
            YSKC  I  A  VF  +  + N  +W+ ++ G   NG  ++ALELF  MEI G VP ++
Sbjct: 233 MYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKI 292

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TF  VL ACSH G V+EG   F+RM   YGI P I H+GCMVDL  RAGL  +A + IQ 
Sbjct: 293 TFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQM 352

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M M P+A +W+ L+GAC  H +  +   A   L++  P     YVLLSN+YA +  W  V
Sbjct: 353 MPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYALDGNWTGV 412

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
            +VR+ M+   V+K PG S +E+   + EF  GD+SH   E+I+ ML+E+ ++LK+ GYV
Sbjct: 413 HKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYV 472

Query: 527 PRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           P T +V  DI++E+ KE +L+ HSEK+AIAF L++TAPGTP+R+ KNLRVC DCH A+KL
Sbjct: 473 PDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVKL 532

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +SK+Y R I+VRD +RFHHF++G CSC D+W
Sbjct: 533 LSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 31/244 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F    + +   WN+++RGYA + +     E +  M       DT ++  ++     
Sbjct: 132 ARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQAR----DTVSWNTIIAWC-- 185

Query: 156 LADVRMGEQTHSVAI-------------------RNGFESLVFVQNSLVHMYAAFGHVKD 196
              V  GE   ++A+                     G E    + ++L++MY+    ++ 
Sbjct: 186 ---VENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMYSKCACIEG 242

Query: 197 ACKVFE-LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           A  VFE L ++ ++  WN+++ GF +NG   +AL LF  M   G+ P+  T  ++ +AC+
Sbjct: 243 AVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACS 302

Query: 256 ELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSW 313
             G +  G      + KV G+  ++     ++D + + G+   A+++ + M  K +A  W
Sbjct: 303 HGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVW 362

Query: 314 STLV 317
             LV
Sbjct: 363 KALV 366


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/581 (40%), Positives = 355/581 (61%), Gaps = 17/581 (2%)

Query: 46   ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIF 100
            I+ L  CAS    +  +Q+H   I+ G+     DL   +  A+++L   +  M     +F
Sbjct: 460  ISTLSSCASLGWIMLGQQIHGEGIKCGL-----DLDVSVSNALLTLYAETDCMEEYQKVF 514

Query: 101  SHVQDPNIFTWNTMIRGYAES-ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
              + + +  +WN+ I   A S A+ L A++ + +M  +G KP+  T+  +L A+S L+ +
Sbjct: 515  FLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLL 574

Query: 160  RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVING 218
             +G Q H++ +++       ++N+L+  Y     ++D   +F  MSER D V+WN++I+G
Sbjct: 575  ELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISG 634

Query: 219  FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
            +  NG  ++A+ L   M  +G   D +T+ ++ SACA +  L  G   H    +  L   
Sbjct: 635  YIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAE 694

Query: 279  VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            V V +AL+D Y+KCG I  A R F  M  RN  SW++++ G A +G G +AL+LF +M+ 
Sbjct: 695  VVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQ 754

Query: 339  GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
             G +P  VTFVGVL ACSH G+VDEGF +FK M + Y + P+IEHF CMVDLLGRAG VK
Sbjct: 755  HGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVK 814

Query: 399  QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST---LLQLEPKHSGDYVLLSN 455
            +  E+I+ M M PNA+IWRT+LGAC    +S   E+ R     L++LEP ++ +YVLLSN
Sbjct: 815  KLEEFIKTMPMNPNALIWRTILGACC-RANSRNTELGRRAAKMLIELEPLNAVNYVLLSN 873

Query: 456  LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            ++A   +W +V+E R  M    VKK  G S V + + V  F  GD++HP+ E+I+  L E
Sbjct: 874  MHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKE 933

Query: 516  ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
            I  K++  GYVP T+    D+E E KE+ LSYHSEK+AIAF+L   +   P+R++KNLRV
Sbjct: 934  IMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSE-LPIRIIKNLRV 992

Query: 576  CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH A K IS + +R+I++RD +RFHHF  G CSC+DYW
Sbjct: 993  CGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 144/262 (54%), Gaps = 7/262 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  + D N  T N ++ G A       A +++ +M    ++ +  +Y  LL A ++
Sbjct: 304 AKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK-DLVEINASSYAVLLSAFTE 362

Query: 156 LADV----RMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            +++    R G++ H+  IRN   +  + + N+LV++YA    + +A  +F+LM  +D V
Sbjct: 363 FSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTV 422

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +WNS+I+G   N +  EA+  F  M   G+ P  ++++S  S+CA LG + LG++ H   
Sbjct: 423 SWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEG 482

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK-EA 329
            K GL  +V+V+NALL  Y++   +   Q+VF  M + + VSW++ +  LA +     +A
Sbjct: 483 IKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQA 542

Query: 330 LELFKEMEIGGFVPGEVTFVGV 351
           ++ F EM   G+ P  VTF+ +
Sbjct: 543 IKYFLEMMQAGWKPNRVTFINI 564



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 156/324 (48%), Gaps = 18/324 (5%)

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           V    Q H    + G  S VF  N+LV+++   G++  A K+F+ M +++LV+W+ +++G
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG--ALALGRRAHTYVWKVGLS 276
           +A NG P+EA  LFR + S G+ P+ Y + S   AC ELG   L LG   H  + K   +
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 277 DNVNVNNALLDFYSKCGIII-AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            ++ ++N L+  YS C   I  A+RVF E++ + + SW++++      G    A +LF  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 336 MEIGG----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDEYGIMPKIEHFG-CMV 388
           M+         P E TF  ++     C +VD G +  ++M  + E     K  + G  +V
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVA--CSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALV 292

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL-GACTIHGHSAIAEIARSTLLQLEPKHS 447
               R GL+  A    + M    NAV    L+ G    H     A+I +     +E   S
Sbjct: 293 SGFARYGLIDSAKMIFEQM-DDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINAS 351

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRR 471
              VLLS    +     N++E +R
Sbjct: 352 SYAVLLSAFTEFS----NLKEGKR 371



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 9/251 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W+ ++ GYA++  P  A  L+  +  +G+ P+ +     L+A  +
Sbjct: 93  AQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQE 152

Query: 156 LAD--VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAW 212
           L    +++G + H +  ++ + S + + N L+ MY+     + DA +VFE +  +   +W
Sbjct: 153 LGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASW 212

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVE----PDGYTMVSLFSACAEL--GALALGRRA 266
           NS+I+ +   G    A  LF  M  E  E    P+ YT  SL +    L    L L  + 
Sbjct: 213 NSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQM 272

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
              + K     ++ V +AL+  +++ G+I +A+ +F +M  RNAV+ + L+VGLA    G
Sbjct: 273 LARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQG 332

Query: 327 KEALELFKEME 337
           +EA ++FKEM+
Sbjct: 333 EEAAKIFKEMK 343


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 330/578 (57%), Gaps = 19/578 (3%)

Query: 52  CASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP- 106
           C      ++Q+H F +  G      +NN  L  Y      S    ++ A  +F  + +  
Sbjct: 151 CGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACY------SRKGFLNEARRVFREMGEGG 204

Query: 107 --NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             +  +WN MI    +    L AVEL+ +M   G+K D  T   +L A + + D+  G Q
Sbjct: 205 GRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQ 264

Query: 165 THSVAIRNGFESLVFVQNSLVHMYA-AFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
            H + I++GF     V + L+ +Y+   G + +  KVFE ++  DLV WN++I+GF+   
Sbjct: 265 FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYE 324

Query: 224 KPNE-ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN-VNV 281
             +E  +  FREM   G  PD  + V + SAC+ L + ++G++ H    K  +  N V+V
Sbjct: 325 DLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSV 384

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           NNAL+  YSKCG +  A+RVF  M + N VS ++++ G A +G   E+L LF+ M     
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDI 444

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  +TF+ VL AC H G V+EG  YF  MK+ + I P+ EH+ CM+DLLGRAG +K+A 
Sbjct: 445 APNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
             I+ M   P ++ W TLLGAC  HG+  +A  A +  LQLEP ++  YV+LSN+YA   
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAA 564

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW     V+R M +  VKK PG S +E+  +V  F   D SHP  +EIH  + EI +K+K
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMK 624

Query: 522 LEGYVPRTENVFA---DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
             GYVP          ++E +EKE  L YHSEK+A+AF L++T    P+ VVKNLR+C D
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGD 684

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH AIKLIS +  REI VRD  RFH FK+GHCSC DYW
Sbjct: 685 CHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 140/267 (52%), Gaps = 7/267 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +  P+I ++NT+I  YA+      A+ L++++       D  T   ++ A   
Sbjct: 94  ARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGD 153

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAW 212
             DV +  Q H   +  G++    V N+++  Y+  G + +A +VF  M E   RD V+W
Sbjct: 154 --DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSW 211

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I     + +  EA+ LFREM   G++ D +TM S+ +A   +  L  G + H  + K
Sbjct: 212 NAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIK 271

Query: 273 VGLSDNVNVNNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLA-VNGFGKEAL 330
            G   N +V + L+D YSKC G ++  ++VF E+   + V W+T++ G +      ++ +
Sbjct: 272 SGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGI 331

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSH 357
             F+EM+  GF P + +FV V  ACS+
Sbjct: 332 WCFREMQHNGFHPDDCSFVCVTSACSN 358



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 14/252 (5%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           VF  N+L++ YA    +  A +VF+ + + D+V++N++I  +A  G+   AL LF E+  
Sbjct: 75  VFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRE 134

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
                DG+T+  +  AC +   + L R+ H +V   G     +VNNA+L  YS+ G +  
Sbjct: 135 LRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNE 192

Query: 298 AQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           A+RVFREM +   R+ VSW+ ++V    +  G EA+ELF+EM   G      T   VL A
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTA 252

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR--AGLV--KQAYEYIQNMLMP 410
            + C     G   F  M  + G          ++DL  +   G+V  ++ +E I      
Sbjct: 253 FT-CVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA----A 307

Query: 411 PNAVIWRTLLGA 422
           P+ V+W T++  
Sbjct: 308 PDLVLWNTMISG 319



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 45  CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           C+T      SS    KQVHA +I+  +P N   +   L+ A+ S    +  A  +F  + 
Sbjct: 351 CVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALV-AMYSKCGNVHDARRVFDTMP 409

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + N+ + N+MI GYA+    + ++ L+  M    I P+T T+  +L A      V  G++
Sbjct: 410 EHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQK 469

Query: 165 THSVAI-RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
             ++   R   E      + ++ +    G +K+A ++ E M
Sbjct: 470 YFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 23/160 (14%)

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           NV   N L++ Y+K  +I  A++VF E+ + + VS++TL+   A  G  + AL LF E+ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 338 IGGFVPGEVTFVGVLYACS---------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
              F     T  GV+ AC          HC +V  G+  +  + +             ++
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNA------------VL 181

Query: 389 DLLGRAGLVKQAYEYIQNMLMPP--NAVIWRTLLGACTIH 426
               R G + +A    + M      + V W  ++ AC  H
Sbjct: 182 ACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQH 221


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 324/556 (58%), Gaps = 3/556 (0%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q+HA  ++ G+    P +   LI        P+ ++  +F      +  TW+++I  +A+
Sbjct: 46  QLHAHILKFGLQ-TIPLVSHNLINLYSKTQLPL-FSLQVFDETPKKSSTTWSSVISAFAQ 103

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +  PLLA++ + +M   G++PD H YP   KA   L    +G+  H +A++ G+   VFV
Sbjct: 104 NEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFV 163

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            +SLV MYA  G + DA  +F+ M ER++V+W+ +I G+A      EALTLF++   E V
Sbjct: 164 GSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDV 223

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           + + +T  S+   C+    L LG+  H    K+    +  V +AL+  YSKCG+I  A +
Sbjct: 224 DVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF E+  RN   W+++++  A +   +    LF+EM   G  P  + F+ VLYACSH G+
Sbjct: 284 VFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGL 343

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           V++G  YF  M+D YGI P+ EH+  +VDLLGRAG +++A   I+ M M P   +W  LL
Sbjct: 344 VEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALL 402

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C IH  + +A      +L+++   SG +VLLSN YA   R+     +R+ +    VKK
Sbjct: 403 TGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKK 462

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
             G S VE GN+V  F  GDRSH +  EI+  L E+ ++++  GYV  T  V   ++ EE
Sbjct: 463 ETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEE 522

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           K + + YHSE++AIAF L+   PG P+RV+KNLRVC DCH AIK +SK   R ++VRD +
Sbjct: 523 KNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNN 582

Query: 601 RFHHFKDGHCSCRDYW 616
           RFH F+DG CSC DYW
Sbjct: 583 RFHRFEDGKCSCGDYW 598



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 14/287 (4%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL + ++   +R G Q H+  ++ G +++  V ++L+++Y+       + +VF+   ++ 
Sbjct: 31  LLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+SVI+ FA N  P  AL  FR M ++GV PD +   S   AC  L    +G+  H 
Sbjct: 91  STTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              K G   +V V ++L+D Y+KCG I  A+ +F EM +RN VSWS ++ G A    G E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH----- 383
           AL LFK+  I      + TF  V+  CS    ++ G       K  +G+  K+       
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-------KLIHGLCLKMSFDSSSF 263

Query: 384 -FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               ++ L  + G+++ AY+ + + +   N  +W ++L AC  H H+
Sbjct: 264 VGSALISLYSKCGVIEGAYQ-VFDEIPTRNLGLWNSMLIACAQHAHT 309


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 337/575 (58%), Gaps = 7/575 (1%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L  C +  +  + K +HA +I       +  +G  LI  +      +  A  +F  + 
Sbjct: 223 TVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALIN-LYGKCGALEEAFGVFVQID 281

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + +I +W++MI  +A+S     A++L   M + G++P+  T+  +L+A++ L   + G++
Sbjct: 282 NKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKE 341

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+  ++ G+   V + ++LV MY  +G V+ A  +FE   ERD+V+W+S+I G++ N  
Sbjct: 342 IHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNES 401

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           P  AL+LFREM  +GV+P+  T VS   ACA +GAL  G + H  V  +GL  +V V  A
Sbjct: 402 PARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATA 461

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L++ Y KCG +  A+ VF  M+K+N ++W+++ +    NG G  +L+L   ME+ G  P 
Sbjct: 462 LVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPD 521

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            + FV +L +C++ G + +G  Y+  M  ++GI P +EH GCMVD+LGRAG ++ A + I
Sbjct: 522 GIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLI 581

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
             M    +++ W  LL AC  H  +A A  A   + QLEPK++  YVLLS+++     W 
Sbjct: 582 NTMKF-ESSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWE 640

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ--TEEIHAMLAEITKKLKL 522
             +E RR M    V++  G S +E+G+RV EF       P     EI A L ++ ++++ 
Sbjct: 641 AAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGREMQG 700

Query: 523 EGYVPRTENV-FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
            GYVP    V   D+EE  KE+A+ YHSE +A+   +++T  GTP+R+ KNLR+C+DCH+
Sbjct: 701 AGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRITKNLRMCSDCHI 760

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A K +SK+  R I VRD  R HHF++G CSC DYW
Sbjct: 761 ATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 182/336 (54%), Gaps = 3/336 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  +QDPN+F+W  +I  YA++ + +  + L S+M+ +G+KPD +T+  +L A + 
Sbjct: 171 AGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTA 230

Query: 156 LADVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           +  +   +  H+  I + G +    V  +L+++Y   G +++A  VF  +  +D+V+W+S
Sbjct: 231 VGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSS 290

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I  FA +G+   A+ L   M  EGV P+  T V++  A   L A   G+  H  + + G
Sbjct: 291 MIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAG 350

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
            SD+V + +AL+  Y   G +  A+ +F   R+R+ VSWS+++ G + N     AL LF+
Sbjct: 351 YSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFR 410

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           EME+ G  P  VTFV  + AC+  G +  G    +R++   G+   +     +V+L G+ 
Sbjct: 411 EMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRC-LGLDKDVPVATALVNLYGKC 469

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           G +++A      M    N + W ++  A   +GH +
Sbjct: 470 GRLEEAEAVFLGM-KKKNLLTWTSIAMAYGQNGHGS 504



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 172/341 (50%), Gaps = 11/341 (3%)

Query: 38  ITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNN-PD--LGKYLIYAIVSLSFP 92
           I + +  C  +L  C+  +   + K+VH   +R  +  +  PD  L + ++  +      
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY-PFLLK 151
              A ++F  ++D N+  W ++I  +  + +   A+ L+ KM +SG+ PD  T+   LLK
Sbjct: 66  TDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLK 125

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
              +  ++  G++ HS  ++ G+E    V N +V MY   G V+ A  VF+ + + ++ +
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFS 185

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH-TYV 270
           W  +I  +A NG   E L L   M   GV+PDGYT  ++  AC  +GAL   +  H   +
Sbjct: 186 WTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATI 245

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              GL  +  V  AL++ Y KCG +  A  VF ++  ++ VSWS+++   A +G  K A+
Sbjct: 246 SSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAI 305

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +L   M++ G  P  VTFV VL A +      + F Y K +
Sbjct: 306 QLLMLMDLEGVRPNNVTFVNVLEAVTSL----KAFQYGKEI 342



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-----SDNVNVNNALLDFY 289
           M +  ++ +     ++ +AC++L AL  G+R H  V +  L      D   + N ++  Y
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            +CG    A  VF  M+ +N V+W++L+      G   +A+ LF++M + G  P  +TF 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 350 GVLYACS-HCGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQA---YE 402
            +L   S     +DEG    KR+     + G          +V++ G+ G V+QA   ++
Sbjct: 121 SILLKWSGRERNLDEG----KRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFD 176

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGH 428
            IQ+    PN   W  ++ A   +GH
Sbjct: 177 SIQD----PNVFSWTIIIAAYAQNGH 198


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 306/523 (58%), Gaps = 7/523 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           +  +F  + D N  +W+ +I    +         L+ +M   G +P       +L A++ 
Sbjct: 64  SRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA---ILNAMAC 120

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +      +  + V + NG +    VQ++   M+A  G V+ A K+F+ +  +DLV W + 
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +     P EAL L ++M  +G+ PD  T++ +  AC+ L +  L    H  +   G 
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII-TTGF 239

Query: 276 SDN--VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
             N  + V  AL+D Y KCG +  A++VF  M++RN ++WS ++ G  ++G+G+EAL LF
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            +M+     P  +TFV +L ACSH G+V EG+  F  M  ++G+ P+ EH+ CMVD+LGR
Sbjct: 300 DQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A ++I+ M + PNA +W  LLGAC IH +  +AE+    L  L+P ++G YV+L
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
            N+Y    +      +R  M    VKK  G+S++E+ N+++ F  GDRSHPQT+ I++ L
Sbjct: 419 YNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSEL 478

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             +  +++ EGY P    V  D++EE KE  L  HSEK+AI F L+N  PG+ +R+ KNL
Sbjct: 479 ERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNL 538

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH A K ISKV  REIVVRD  RFHHFK+G CSCRDYW
Sbjct: 539 RVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 147/300 (49%), Gaps = 24/300 (8%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           GI+PD  T+PF++KA S L     G + H   ++ G++S VF+ NSL+ MY      + +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            +VF+ M +++ V+W+++I     + +  E  +LFR+M SEG  P   +  ++ +A A +
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAMACV 121

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            +       +  V + GL  + +V +A    +++CG +  A+++F  +  ++ V+W+T +
Sbjct: 122 RSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTI 181

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC----------GMVDEGFSY 367
                     EAL L K+M + G  P  +T +GV+ ACS            G++  GF Y
Sbjct: 182 EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFY 241

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            + +  E            ++DL  + G +  A +    M    N + W  ++    +HG
Sbjct: 242 NQLLAVETA----------LIDLYVKCGSLTYARKVFDGM-QERNIITWSAMISGYGMHG 290



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++YA  +F  +Q+ NI TW+ MI GY        A+ L+ +M  S +KPD  T+  +L A
Sbjct: 261 LTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSA 319

Query: 153 ISKLADVRMG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLV 210
            S    V  G E  +S+A   G          +V +    G + +AC   E M  R +  
Sbjct: 320 CSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAA 379

Query: 211 AWNSVING 218
            W +++  
Sbjct: 380 VWGALLGA 387


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 343/585 (58%), Gaps = 14/585 (2%)

Query: 35  ENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           E+   S+++ C  L ++        +Q+H   +++G   +  ++   L+ A  S    M 
Sbjct: 299 ESSFASIIKLCANLKEL-----RFTEQLHCSVVKYGFVFDQ-NIRTALMVA-YSKCMAML 351

Query: 95  YAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            A  +F       N+ +W  MI G+ ++     AV L+S+M   G++P+  TY  +L A+
Sbjct: 352 DALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL 411

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
             ++      + H+  ++  +E    V  +L+  Y   G V +A KVF  +  +D+VAW+
Sbjct: 412 PVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWK 272
           +++ G+A  G+   A+ +F E+   GV+P+ +T  S+ + CA   A +  G++ H +  K
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIK 527

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  ++ V++ALL  Y+K G I +A+ VF+  R+++ VSW++++ G A +G   +AL++
Sbjct: 528 SRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 587

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           FKEM+        VTF+GV  AC+H G+V+EG  YF  M  +  I P  EH  CMVDL  
Sbjct: 588 FKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 647

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
           RAG +++A + I NM     + IWRT+L AC +H  + +  +A   ++ + P+ S  YVL
Sbjct: 648 RAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVL 707

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           LSN+YA    W    +VR+ M +  VKK PG+S +E+ N+ + F  GDRSHP  ++I+  
Sbjct: 708 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMK 767

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L +++ +LK  GY P T  V  DI++E KE  L+ HSE++AIAF L+ T  G+P+ ++KN
Sbjct: 768 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKN 827

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHF-KDGHCSCRDYW 616
           LRVC DCH+ IKLI+K+  REIVVRD +RFHHF  DG CSC D+W
Sbjct: 828 LRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 11/289 (3%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           YAHN+F    D +  ++ +++ G++       A  L+  +   G++ D   +  +LK  +
Sbjct: 49  YAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSA 108

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            L D   G Q H   I+ GF   V V  SLV  Y    + KD   VF+ M ER++V W +
Sbjct: 109 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTT 168

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+G+A N    E LTLF  M  EG +P+ +T  +     AE G    G + HT V K G
Sbjct: 169 LISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 228

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           L   + V+N+L++ Y KCG +  A+ +F +   ++ V+W++++ G A NG   EAL +F 
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 288

Query: 335 EMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMK 372
            M +      E +F  ++  C+           HC +V  GF + + ++
Sbjct: 289 SMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 164/311 (52%), Gaps = 5/311 (1%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L+V A+   +L  +Q+H   I+ G  L++  +G  L+   +  S       N+F  ++
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGF-LDDVSVGTSLVDTYMKGS-NFKDGRNVFDEMK 159

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + N+ TW T+I GYA ++     + L+ +M   G +P++ T+   L  +++      G Q
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+V ++NG +  + V NSL+++Y   G+V+ A  +F+    + +V WNS+I+G+A+NG 
Sbjct: 220 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 279

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL +F  M    V     +  S+   CA L  L    + H  V K G   + N+  A
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTA 339

Query: 285 LLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           L+  YSKC  ++ A R+F+E     N VSW+ ++ G   N   +EA+ LF EM+  G  P
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRP 399

Query: 344 GEVTFVGVLYA 354
            E T+  +L A
Sbjct: 400 NEFTYSVILTA 410


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 315/522 (60%), Gaps = 1/522 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAIS 154
           A N+F  + + + F+W  +I G  +   P  A+ELY  M      K +  T    L A +
Sbjct: 203 ARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASA 262

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            +  + MG++ H   +R G +S   V  SL+ MY   G +++A  +F+ M ERD+V+W +
Sbjct: 263 AIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTT 322

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I+ +  NG+  E   LFR + +  + P+ +T   + +ACA+L A  LG++ H Y+ +VG
Sbjct: 323 MIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVG 382

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                +  +AL+  YSKCG I  A+ VF  + + +  SW++L+VG A +G   +AL  F+
Sbjct: 383 FDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFE 442

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            +   G  P  + F+GVL AC+H G+VD+G  YF  +K+++G+   I+H+ C++DLL RA
Sbjct: 443 LLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARA 502

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G   +A   I  M + P+  IW  LLG C IHG+  +A+ A  +L ++EP++   YV L+
Sbjct: 503 GQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLA 562

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA          +R TM    + K PG S +E+   V  F +GD SHP+++EI   L+
Sbjct: 563 NIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLS 622

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E++K++K  GYVP T  V  D+E E+KE+ LSYHSEK+A+AF +++T  GTP++V KNLR
Sbjct: 623 ELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLR 682

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            C DCH AIK IS +  R+I+VRD +RFH F+ G CSC+DYW
Sbjct: 683 TCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 146/336 (43%), Gaps = 65/336 (19%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           KP    Y  LLK   K   ++ G+Q H+    +G   L ++ N L+ MYA  G + DA K
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGL-YISNRLLDMYAKCGSLVDAEK 174

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE--- 256
           VF+ M  RDL +WN +I+G+   G   +A  LF +M +     D ++  ++ S C +   
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNR 230

Query: 257 ---------------------------------LGALALGRRAHTYVWKVGLSDNVNVNN 283
                                            + +L +G++ H ++ ++GL  +  V  
Sbjct: 231 PEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWC 290

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +LLD Y KCG I  A+ +F +M +R+ VSW+T++     NG  +E   LF+ +     +P
Sbjct: 291 SLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMP 350

Query: 344 GEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
            + TF GVL AC+           H  MV  GF  F                  +V +  
Sbjct: 351 NDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAA------------SALVHMYS 398

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + G ++ A    + +L  P+   W +LL     HG 
Sbjct: 399 KCGDIENAKSVFE-ILPQPDLFSWTSLLVGYAQHGQ 433


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 340/577 (58%), Gaps = 43/577 (7%)

Query: 41  VVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           V++ C TL+          +++H ++ + G   N   +   LI+      F    A ++F
Sbjct: 124 VLKACGTLVDG--------RKIHCWAFKLGFQWN-VFVAASLIHMYSRFGFT-GIARSLF 173

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             +   ++ +WN MI G  ++ N   A+++  +M + GIK +                  
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN------------------ 215

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
                        F ++V +    V MYA  G +  A KVFE++  +D+++WN++I G+A
Sbjct: 216 -------------FVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 221 SNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            NG  +EA+ +++ M   + + P+  T VS+  A A +GAL  G + H  V K  L  +V
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 322

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V   L+D Y KCG ++ A  +F ++ + ++V+W+ ++    ++G  ++ L+LF EM   
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 382

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  VTFV +L ACSH G V+EG   F+ M+ EYGI P ++H+GCMVDLLGRAG ++ 
Sbjct: 383 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEM 441

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AY++I++M + P+A IW  LLGAC IHG+  + + A   L +++ K+ G YVLLSN+YA 
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 501

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             +W  V +VR    +  +KKTPG S +E+  +V  F+ G++SHP+ +EI+  L  +T K
Sbjct: 502 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 561

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GY+P    V  D+EE+EKE  L+ HSE++AIAF +++T P +P+R+ KNLRVC DC
Sbjct: 562 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 621

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K IS++  REIVVRD +RFHHFKDG CSC DYW
Sbjct: 622 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 168/339 (49%), Gaps = 38/339 (11%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE-LYSKMHVSGIKPDTHTYPFLLK 151
           +S +   F  +   +++ WN+MI  Y  + +   A+   Y  + VS I+PD +T+P +LK
Sbjct: 67  VSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 126

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D   G + H  A + GF+  VFV  SL+HMY+ FG    A  +F+ M  RD+ +
Sbjct: 127 ACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 183

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I+G   NG   +AL +  EM  EG++ +  T+VS+                     
Sbjct: 184 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP------------------- 224

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
                         +D Y+K G++ +A +VF  +  ++ +SW+TL+ G A NG   EA+E
Sbjct: 225 ------------VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 272

Query: 332 LFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++K M E    +P + T+V +L A +H G + +G     R+  +  +   +    C++D+
Sbjct: 273 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI-KTNLHLDVFVATCLIDV 331

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            G+ G +  A       +   ++V W  ++    IHGH+
Sbjct: 332 YGKCGRLVDAMSLFYQ-VPQESSVTWNAIISCHGIHGHA 369



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 27/271 (9%)

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H++ +  G    +F+   LV++YA  G V  +   F+ + ++D+ AWNS+I+ +  NG  
Sbjct: 39  HALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHF 98

Query: 226 NEALTLFRE--MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           +EA+  F +  + SE + PD YT   +  AC   G L  GR+ H + +K+G   NV V  
Sbjct: 99  HEAIGCFYQLLLVSE-IRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAA 154

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  YS+ G    A+ +F +M  R+  SW+ ++ GL  NG   +AL++  EM + G   
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 344 GEVTFVGVL------YACSHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAG 395
             VT V +L      YA    G++D     F+       I+P   +  +  ++    + G
Sbjct: 215 NFVTVVSILPVFVDMYA--KLGLLDSAHKVFE-------IIPVKDVISWNTLITGYAQNG 265

Query: 396 LVKQAYEYIQNM----LMPPNAVIWRTLLGA 422
           L  +A E  + M     + PN   W ++L A
Sbjct: 266 LASEAIEVYKMMEECKEIIPNQGTWVSILPA 296


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 341/576 (59%), Gaps = 14/576 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T L++C+  +  +  KQ+H   +++G      D+   L+      S  +  A  +FS   
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSKCS-SVDEAFKLFSMAD 368

Query: 105 DP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL--KAISKLADVRM 161
              N+ TW  MI G+ ++ N   AV+L+ +M   G++P+  TY  +L  K  S L+    
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS---- 424

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
             Q H+  I+  +E +  V  +L+  Y   G+V ++ +VF  +  +D+VAW++++ G A 
Sbjct: 425 --QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQ 482

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVN 280
                +A+ +F ++  EGV+P+ YT  S+ +AC+   A +  G++ H    K G S+ + 
Sbjct: 483 TRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALC 542

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V++ALL  YSK G I +A++VF    +R+ VSW++++ G   +G  K+ALE+F+ M+  G
Sbjct: 543 VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQG 602

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
               +VTF+GVL AC+H G+V+EG  YF  M  +Y I  K EH+ CMVDL  RAG+  +A
Sbjct: 603 LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKA 662

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + I  M  P +  IWRTLL AC +H +  + ++A   L+ L+P  +  YVLLSN++A  
Sbjct: 663 MDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVA 722

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
             W     VR+ M + +VKK  G S +E+ NR+F F  GD SHP ++ ++A L E++ KL
Sbjct: 723 GNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKL 782

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           K  GY P T  VF D+EEE KE  LS HSE++AIA+ L+   PG P+++ KNLR+C DCH
Sbjct: 783 KDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCH 842

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             I+LIS +  R ++VRD +RFHHFK G CSC  YW
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 23/347 (6%)

Query: 87  VSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
           +SL     YAH +F      +I  +N ++  ++ + +   A+ L+  +H SG+  D  T 
Sbjct: 48  ISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTL 107

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
              LK    L D  +G Q H  ++++GF   V V  SLV MY      +D   +F+ M  
Sbjct: 108 SCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI 167

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           +++V+W S+++G+A NG  +E + L  +M  EGV P+G+T  ++  A A+   +  G + 
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  + K G      V NAL+  Y K  ++  A+ VF  M  R++V+W+ ++ G A  GF 
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACS-----------HCGMVDEGFSYFKRMKDEY 375
            E  ++F  M + G       F   L  CS           HCG+V  G+ + + ++   
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT-- 345

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                      ++    +   V +A++         N V W  ++G 
Sbjct: 346 ----------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/632 (37%), Positives = 343/632 (54%), Gaps = 50/632 (7%)

Query: 25  SLYHSTPASQENPITSVVRK---CITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
           S +      +E  ++S++ K   CI L Q+        KQ+H   +R G+  +   L K 
Sbjct: 37  STFSEISHQRELLVSSLISKLDDCINLNQI--------KQIHGHVLRKGLDQSCYILTK- 87

Query: 82  LIYAIVSLSFPMS-YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
           LI  +  L  PM  Y   +   VQ  N F W  +IRGY        A+ +Y  M    I 
Sbjct: 88  LIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEIT 147

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKDACK 199
           P + T+  LLKA   + D+ +G Q H+   R  GF   V+V N+++ MY   G +  A K
Sbjct: 148 PVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCGSIVCARK 206

Query: 200 VFELMSERD-------------------------------LVAWNSVINGFASNGKPNEA 228
           VF+ M ERD                               +VAW +++ GFA N KP EA
Sbjct: 207 VFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEA 266

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS--DNVNVNNALL 286
           L  F  M   G+  D  T+    SACA+LGA     RA     K G S  D+V + +AL+
Sbjct: 267 LEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALI 326

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGE 345
           D YSKCG +  A  VF  M  +N  S+S++++GLA +G  +EAL+LF  M     + P  
Sbjct: 327 DMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNT 386

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFVG L ACSH G+VD+G   F  M   +G+ P  +H+ CMVDLLGRAG +++A E I+
Sbjct: 387 VTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIK 446

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M + P+  +W  LLGAC IH +  IAEIA   L +LEP   G+Y+LLSN+Y+    W  
Sbjct: 447 TMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGG 506

Query: 466 VQEVRRTMVKERVKKTPGHS-LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           V  VR+ + ++ +KKTP  S +V+   ++ +FF G+ +HP +++I   L E+ ++L   G
Sbjct: 507 VLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALG 566

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y P   +V  D+ +  K   L  H+EK+A+AF L+ T     ++++KNLR+C DCH+ ++
Sbjct: 567 YQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMR 626

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L S+V  R I++RD  RFHHF+ G CSC D+W
Sbjct: 627 LASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 341/590 (57%), Gaps = 18/590 (3%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSY 95
           +++  R   +LL   AS +H L Q HA  +  G    +P L    +   A+      + +
Sbjct: 3   VSAAARHLESLLPRLASLRHYL-QFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPH 61

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAI 153
           A  +   +  P     N  +RG A S +P  ++ L +   +  +  +PD  +  F LKA 
Sbjct: 62  ALLLLRSLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKAS 121

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++ +D     Q H++ +R G  + V +  +L+  YA  G +  A KVF+ M+ RD+  WN
Sbjct: 122 ARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWN 181

Query: 214 SVINGFASNGKPNEALTLFREMASE------GVEPDGYTMVSLFSACAELGALALGRRAH 267
           S++ G A   +PN AL LF  +A+         EP+  T+V+  SACA++G L  G   H
Sbjct: 182 SLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVH 241

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA--VSWSTLVVGLAVNGF 325
            +  + GL  NV V N+L+D YSKCG +  A  VF  ++  +   VS++  +   +++G 
Sbjct: 242 EFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGH 301

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G +AL LF EM      P  VT++ VL  C+H G+VD+G   F  M+    + P ++H+G
Sbjct: 302 GGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYG 356

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            +VDLLGRAG + +AY+ + +M  P + V+W+TLLGA  +HG   +AE+A + L +L   
Sbjct: 357 TIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSN 416

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
             GDYVLLSN+YA + RW++V  VR TM    V+K PG S  E+   + +F  GD+ HP+
Sbjct: 417 VDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPR 476

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            +EI+  L +I  ++   GY P T NV  DI EEEK+ AL YHSEK+AIAF L+ T PG 
Sbjct: 477 WQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGE 536

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            +RV+KNLR+C DCH+  KLISK Y R IV+RDR+RFH F+DG CSCRDY
Sbjct: 537 TLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/578 (39%), Positives = 345/578 (59%), Gaps = 11/578 (1%)

Query: 46   ITLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            I+ L  CA  K     +QVH  +++ G+ L+       ++  +      MS    +F+ +
Sbjct: 485  ISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSV--SNVLVKMYGECGAMSDYWKVFNSM 542

Query: 104  QDPNIFTWNTMIRGYAESANPLLA-VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
             + +  +WNTM+   A S  P+   V++++ M   G+ P+  T+  LL A+S L+ + +G
Sbjct: 543  AEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELG 602

Query: 163  EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVINGFAS 221
            +Q H+  +++G      V N+L+  YA  G +     +F  MS+R D ++WNS+I+G+  
Sbjct: 603  KQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIY 662

Query: 222  NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
            NG   EA+     M   G   D  T   + +ACA + AL  G   H +  +  L  +V V
Sbjct: 663  NGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVV 722

Query: 282  NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
             +AL+D YSKCG +  A ++F  M +RN  SW++++ G A +G G++A+E+F+EM     
Sbjct: 723  ESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRE 782

Query: 342  VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
             P  VTFV VL ACSH G+V+ G  YF+ M D +GI+P+IEH+ C++DLLGRAG + +  
Sbjct: 783  SPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIK 841

Query: 402  EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST---LLQLEPKHSGDYVLLSNLYA 458
            EYIQ M + PNA+IWRT+L AC      +  ++ R     LL++EP++  +YVL SN +A
Sbjct: 842  EYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHA 901

Query: 459  YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
                W +  + R  M +   KK  G S V L + V  F  GDRSHP T+EI+  L  + +
Sbjct: 902  ATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQ 961

Query: 519  KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
             ++  GYVP TE    D+EEE KE+ LSYHSEK+AIAF+L  ++ G P+R++KNLRVC D
Sbjct: 962  NIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLRVCGD 1020

Query: 579  CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            CH+A + IS++ SR+I++RD  RFHHFKDG CSC DYW
Sbjct: 1021 CHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 167/339 (49%), Gaps = 8/339 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A +IF  ++  N  T N +I G         AV+++     + +  +  TY  LL A+++
Sbjct: 329 AKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR-NTVDVNADTYVVLLSALAE 387

Query: 156 LA----DVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
            +     +R+G   H   +R G   L + V N LV+MYA  G ++ A K+F+LM   D +
Sbjct: 388 YSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRI 447

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +WN++I+    NG   EA+  +  M    + P  + ++S  S+CA L  L  G++ H   
Sbjct: 448 SWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDA 507

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG-KEA 329
            K GL  + +V+N L+  Y +CG +    +VF  M + + VSW+T++  +A +     E 
Sbjct: 508 VKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEI 567

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           +++F  M  GG +P +VTF+ +L A S   +++ G      +  ++G+M        ++ 
Sbjct: 568 VKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVM-KHGVMEDNVVDNALIS 626

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
              ++G +        NM    +A+ W +++     +G+
Sbjct: 627 CYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGN 665



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 159/355 (44%), Gaps = 14/355 (3%)

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG----IKPDTHTYP 147
           P   A  +F      ++ TWN ++  YA+  +      L+  M        ++P  HT+ 
Sbjct: 219 PPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFG 278

Query: 148 FLLK-AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
            L+  A        + +Q     +++G  S ++V ++LV  +A  G   +A  +F  + +
Sbjct: 279 SLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQ 338

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG----ALAL 262
           ++ V  N +I G        EA+ +F    +  V+ +  T V L SA AE       L +
Sbjct: 339 KNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTYVVLLSALAEYSISEEGLRI 397

Query: 263 GRRAHTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           GR  H ++ + GL+D  + V+N L++ Y+KCG I +A ++F+ M   + +SW+T++  L 
Sbjct: 398 GRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALD 457

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            NG  +EA+  +  M      P     +  L +C+   ++  G         ++G+    
Sbjct: 458 QNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAV-KWGLDLDT 516

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
                +V + G  G +   Y  + N +   + V W T++G       + I+EI +
Sbjct: 517 SVSNVLVKMYGECGAMSD-YWKVFNSMAEHDEVSWNTMMGVMA-SSQTPISEIVK 569



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL  + +  D    E  H   I+ G    +F+ N LV+ YA    +  A +VF+ M ER+
Sbjct: 67  LLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERN 126

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASE---GVEPDGYTMVSLFSACAELGALALG-- 263
            V+W  +++G+  +G   EA  +FR M  E   G  P  +T  +L  AC + G   LG  
Sbjct: 127 AVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFA 186

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKC--GIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            + H  V K   + N  V NAL+  Y  C  G  I AQRVF     R+ ++W+ L+   A
Sbjct: 187 VQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYA 246

Query: 322 VNGFGKEALELFKEMEIGG----FVPGEVTF 348
             G       LFK+M+ G       P E TF
Sbjct: 247 KKGDVASTFTLFKDMQRGDSRIQLRPTEHTF 277



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 182/380 (47%), Gaps = 19/380 (5%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH---VSGIKPDTHTYPFL 149
           ++ A  +F  + + N  +W  ++ GY        A  ++  M     +G +P + T+  L
Sbjct: 112 LAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTL 171

Query: 150 LKAISKLADVRMG--EQTHSVAIRNGFESLVFVQNSLVHMYAA--FGHVKDACKVFELMS 205
           L+A       R+G   Q H +  +  + S   V N+L+ MY +   G    A +VF+   
Sbjct: 172 LRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTP 231

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEG----VEPDGYTMVSLFS-ACAELGAL 260
            RDL+ WN++++ +A  G      TLF++M        + P  +T  SL + A    G+ 
Sbjct: 232 IRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSS 291

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
           A+  +   +V K G S ++ V +AL+  +++ G+   A+ +F  ++++NAV+ + L+VGL
Sbjct: 292 AVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGL 351

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---EYGI 377
               F +EA+++F        V  + T+V +L A +   + +EG    + +       G+
Sbjct: 352 VRQDFSEEAVKIFVGTRNTVDVNAD-TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGL 410

Query: 378 MP-KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436
              KI     +V++  + G ++ A +  Q ++   + + W T++ A   +G+   A +  
Sbjct: 411 TDLKIAVSNGLVNMYAKCGAIESASKIFQ-LMEATDRISWNTIISALDQNGNCEEA-VMH 468

Query: 437 STLLQLEPKHSGDYVLLSNL 456
            +L++       ++ L+S+L
Sbjct: 469 YSLMRQSCISPSNFALISSL 488


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/523 (39%), Positives = 309/523 (59%), Gaps = 2/523 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAIS 154
           A  +F  +   +   W  MI GYA++ N   AV  +  M   G +  D H    +L A  
Sbjct: 173 ACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASG 232

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL-MSERDLVAWN 213
            L D  +    HS  +++GFE  V V+N+L  MYA    + +A +V ++     ++V+  
Sbjct: 233 GLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSAT 292

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+I+G+       +AL +F E+  +GVEP+ +T  S+   CA    L  G + H  V K 
Sbjct: 293 SLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKT 352

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
            L  +  V++ LLD Y KCG+I  + ++F+E+     ++W+  +  LA +G G+EA+  F
Sbjct: 353 SLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAF 412

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P  +TFV +L ACSH G+VDEG  YF  MKD +GI PK EH+ C++D+ GR
Sbjct: 413 DRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGR 472

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           AG + +A ++I  M + PNA  W +LLGAC + G+  + EIA   +++LEP ++G +V L
Sbjct: 473 AGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSL 532

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           S +YA   +W +V+ VR+ M   R+KK PG S V+   +   F   D SHPQ E+I+  L
Sbjct: 533 SGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKL 592

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+ +++K EGYVP T  +  ++E+  K+  L YHSE+IA+AF L++     P+ V KNL
Sbjct: 593 EELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNL 652

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R+CADCH A+K ISKV +R+I+VRD SRFHHF  G CSC DYW
Sbjct: 653 RICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 196/427 (45%), Gaps = 16/427 (3%)

Query: 24  KSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI 83
           +SL  +T      P+ S  R     L  C         +HA  +  G    +  L  +LI
Sbjct: 10  RSLDTATSLRLAAPLQSCGRAGDLRLGRC---------LHARLVLSGAAAASTFLANHLI 60

Query: 84  YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
             + S    +  A  +F  +  PN+ +W T++ G  +++    A+  +S M  +G+ P  
Sbjct: 61  -TMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQ 119

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
                  +A + LA    G Q H V +R GF++ +FV ++L  MY+  G + +AC+VF+ 
Sbjct: 120 FALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQ 179

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALAL 262
           M ++D VAW ++I+G+A NG    A+  FR+M  EG V  D + + S+ SA   L    L
Sbjct: 180 MPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWL 239

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLA 321
            R  H+ V K G    V V NAL D Y+K   +  A RV + +    N VS ++L+ G  
Sbjct: 240 ARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYI 299

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
                ++AL +F E+   G  P E TF  ++  C+   ++++G      +     I    
Sbjct: 300 ETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSF 359

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTL 439
                ++D+ G+ GL+  + +  + +    + + W   +     HGH   AI    R T 
Sbjct: 360 VS-STLLDMYGKCGLISLSIQLFKEIEYHTD-IAWNAAINVLAQHGHGREAIRAFDRMTS 417

Query: 440 LQLEPKH 446
             + P H
Sbjct: 418 SGIRPNH 424


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 350/607 (57%), Gaps = 45/607 (7%)

Query: 50  QVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           + CA S   L  K+VH  + R GV +++  +G  LI+A       +  A  +F  +   +
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGV-MSDVFVGNALIHAYGKCKC-VEGARRVFDDLVVRD 229

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           + +W ++   Y +   P   ++++ +M  SG+KP+  T   +L A ++L D++ G++ H 
Sbjct: 230 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 289

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN-------------- 213
            A+R+G    +FV ++LV +YA    V++A  VF+LM  RD+V+WN              
Sbjct: 290 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 349

Query: 214 ---------------------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
                                +VI G   NG+  EA+ +FR+M   G +P+  T+ S+  
Sbjct: 350 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILP 409

Query: 253 ACAELGALALGRRAHTYV---WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           AC+    L +G+  H YV   WKVG   ++    ALL  Y+KCG +  ++ VF  MR+++
Sbjct: 410 ACSFSENLRMGKEIHCYVFRHWKVG---DLTSTTALLYMYAKCGDLNLSRNVFDMMRRKD 466

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            V+W+T+++  A++G GKEAL LF +M +    P  VTF GVL  CSH  +V+EG   F 
Sbjct: 467 VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFN 526

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  ++ + P   H+ C+VD+  RAG + +AY++IQ M M P A  W  LL AC ++ + 
Sbjct: 527 SMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNV 586

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +A+I+   L ++EP + G+YV L N+    + W    +VR  M +  + KTPG S +++
Sbjct: 587 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 646

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
           GN+V  F +GD+S+ ++++I+  L E+ +K+K+ GY P T+ V  DI++EEK ++L  HS
Sbjct: 647 GNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHS 706

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+AF ++N    + +RV KNLR+C DCH AIK +SKV    IVVRD  RFHHFK+G+
Sbjct: 707 EKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGN 766

Query: 610 CSCRDYW 616
           CSC+D W
Sbjct: 767 CSCKDLW 773



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 59/404 (14%)

Query: 71  VPLNNPD-LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           +P N P  LG  LI   +++    + A  +F ++  P+  T +T+I           A++
Sbjct: 92  LPTNIPSHLGLRLIRVALNVG-DFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIK 150

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           +YS +   GIKPD   +    KA +   D    ++ H  A R G  S VFV N+L+H Y 
Sbjct: 151 IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 210

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               V+ A +VF+ +  RD+V+W S+ + +   G P + + +FREM   GV+P+  T+ S
Sbjct: 211 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 270

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  ACAEL  L  G+  H +  + G+  N+ V +AL+  Y+KC  +  A+ VF  M  R+
Sbjct: 271 ILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRD 330

Query: 310 AVS-----------------------------------WSTLVVGLAVNGFGKEALELFK 334
            VS                                   W+ ++ G   NG  +EA+E+F+
Sbjct: 331 VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR 390

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE----------YGIMPKIEHF 384
           +M+  GF P E+T   +L ACS        FS   RM  E           G +      
Sbjct: 391 KMQKMGFKPNEITISSILPACS--------FSENLRMGKEIHCYVFRHWKVGDLTSTTAL 442

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             M    G   L +  ++    M+   + V W T++ A  +HG+
Sbjct: 443 LYMYAKCGDLNLSRNVFD----MMRRKDVVAWNTMIIANAMHGN 482



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 37/210 (17%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L  C+ S++    K++H +  RH   + +      L+Y        ++ + N+F  ++
Sbjct: 406 SILPACSFSENLRMGKEIHCYVFRHW-KVGDLTSTTALLYMYAKCG-DLNLSRNVFDMMR 463

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++  WNTMI   A   N   A+ L+ KM +S ++P++ T+  +L   S          
Sbjct: 464 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS---------- 513

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS  +  G           V ++ + G         + + E D   ++ V++ ++  G+
Sbjct: 514 -HSRLVEEG-----------VQIFNSMGR--------DHLVEPDANHYSCVVDIYSRAGR 553

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            NEA    + M    +EP      +L +AC
Sbjct: 554 LNEAYKFIQGMP---MEPTASAWGALLAAC 580


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/525 (42%), Positives = 310/525 (59%), Gaps = 34/525 (6%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELY-SKMHVSGIKPDTHTYPFLLKAISKLADVRM--- 161
           P  F++N+ IR  A    P LA+ LY S +  S   P+ +TYP LL A ++LAD      
Sbjct: 51  PTTFSYNSAIRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSA 110

Query: 162 ------GEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
                 G   H+   R G ES   F++ SL+ +YAA G +  A +VF+L      V    
Sbjct: 111 AAAAAAGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYV---- 166

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV- 273
                       + L LFR M +     D  T+++L SACA LGAL   R AH Y+    
Sbjct: 167 ------------QVLRLFRTMRTA----DHVTLLALLSACAHLGALHTARWAHAYLATTC 210

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKEALE 331
                 N+  ALL+ Y +CG +  A  +F     R ++  +W+ ++ GLA+NGF  +AL 
Sbjct: 211 SFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALH 270

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF  M+     P  VT   VL AC+H GMVDEG    +RM  +Y + P IEH+GC VDLL
Sbjct: 271 LFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLL 330

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAGL+++A   I+ +    +  +W  LL AC  H +  + ++    +L+L+P+H+G +V
Sbjct: 331 GRAGLLEEALALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWV 390

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
            LSN+YA   +W  VQEVR +M + R+ K PG S+VEL   V+EF  GD SHPQ+++I+A
Sbjct: 391 FLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYA 450

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
           ML EI K L L+G+ P T+ V  DI+EE+KE  +S HSEK+A+AF L+NT  G  +R+VK
Sbjct: 451 MLDEIGKTLSLKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVK 510

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLR+C DCH  +K++S+VY R IVVRDR+RFHHFK G CSC DYW
Sbjct: 511 NLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 555


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 350/607 (57%), Gaps = 45/607 (7%)

Query: 50  QVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           + CA S   L  K+VH  + R GV +++  +G  LI+A       +  A  +F  +   +
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGV-MSDVFVGNALIHAYGKCKC-VEGARRVFDDLVVRD 143

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           + +W ++   Y +   P   ++++ +M  SG+KP+  T   +L A ++L D++ G++ H 
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 203

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN-------------- 213
            A+R+G    +FV ++LV +YA    V++A  VF+LM  RD+V+WN              
Sbjct: 204 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 263

Query: 214 ---------------------SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFS 252
                                +VI G   NG+  EA+ +FR+M   G +P+  T+ S+  
Sbjct: 264 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILP 323

Query: 253 ACAELGALALGRRAHTYV---WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           AC+    L +G+  H YV   WKVG   ++    ALL  Y+KCG +  ++ VF  MR+++
Sbjct: 324 ACSFSENLRMGKEIHCYVFRHWKVG---DLTSTTALLYMYAKCGDLNLSRNVFDMMRRKD 380

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            V+W+T+++  A++G GKEAL LF +M +    P  VTF GVL  CSH  +V+EG   F 
Sbjct: 381 VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFN 440

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            M  ++ + P   H+ C+VD+  RAG + +AY++IQ M M P A  W  LL AC ++ + 
Sbjct: 441 SMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNV 500

Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
            +A+I+   L ++EP + G+YV L N+    + W    +VR  M +  + KTPG S +++
Sbjct: 501 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 560

Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHS 549
           GN+V  F +GD+S+ ++++I+  L E+ +K+K+ GY P T+ V  DI++EEK ++L  HS
Sbjct: 561 GNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHS 620

Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGH 609
           EK+A+AF ++N    + +RV KNLR+C DCH AIK +SKV    IVVRD  RFHHFK+G+
Sbjct: 621 EKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGN 680

Query: 610 CSCRDYW 616
           CSC+D W
Sbjct: 681 CSCKDLW 687



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 59/404 (14%)

Query: 71  VPLNNPD-LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE 129
           +P N P  LG  LI   +++    + A  +F ++  P+  T +T+I           A++
Sbjct: 6   LPTNIPSHLGLRLIRVALNVG-DFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIK 64

Query: 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
           +YS +   GIKPD   +    KA +   D    ++ H  A R G  S VFV N+L+H Y 
Sbjct: 65  IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 124

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               V+ A +VF+ +  RD+V+W S+ + +   G P + + +FREM   GV+P+  T+ S
Sbjct: 125 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 184

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  ACAEL  L  G+  H +  + G+  N+ V +AL+  Y+KC  +  A+ VF  M  R+
Sbjct: 185 ILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRD 244

Query: 310 AVS-----------------------------------WSTLVVGLAVNGFGKEALELFK 334
            VS                                   W+ ++ G   NG  +EA+E+F+
Sbjct: 245 VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR 304

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE----------YGIMPKIEHF 384
           +M+  GF P E+T   +L ACS        FS   RM  E           G +      
Sbjct: 305 KMQKMGFKPNEITISSILPACS--------FSENLRMGKEIHCYVFRHWKVGDLTSTTAL 356

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             M    G   L +  ++    M+   + V W T++ A  +HG+
Sbjct: 357 LYMYAKCGDLNLSRNVFD----MMRRKDVVAWNTMIIANAMHGN 396



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 37/210 (17%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           ++L  C+ S++    K++H +  RH   + +      L+Y        ++ + N+F  ++
Sbjct: 320 SILPACSFSENLRMGKEIHCYVFRHW-KVGDLTSTTALLYMYAKCG-DLNLSRNVFDMMR 377

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++  WNTMI   A   N   A+ L+ KM +S ++P++ T+  +L   S          
Sbjct: 378 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCS---------- 427

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            HS  +  G           V ++ + G         + + E D   ++ V++ ++  G+
Sbjct: 428 -HSRLVEEG-----------VQIFNSMGR--------DHLVEPDANHYSCVVDIYSRAGR 467

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSAC 254
            NEA    + M    +EP      +L +AC
Sbjct: 468 LNEAYKFIQGMP---MEPTASAWGALLAAC 494


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/479 (43%), Positives = 301/479 (62%), Gaps = 18/479 (3%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TYPF    +SK      G Q         ++S +  + ++  MY +F  +  A  VFE +
Sbjct: 489 TYPFQAADMSKSNIFAYGLQ---------YDSRILTKFAI--MYVSFNRIDAASIVFEDI 537

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG-------YTMVSLFSACAEL 257
                  WN +I GFA++G+   +L L+ +M  +G++PD         +++S+  AC  L
Sbjct: 538 PNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNL 597

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
           GAL  G   H+YV + G   ++ V  A++D YSKCG +  A+ +F E   ++ V WS ++
Sbjct: 598 GALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMI 657

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
               ++G G++A++LF +M   G  P  VTF  VL ACSH G+++EG  YF+ M +E+ I
Sbjct: 658 ASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVI 717

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437
             K+ ++ CMVDLLGRAG + +A + I+NM + P+A IW +LLGAC IH +  +AE    
Sbjct: 718 ARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIAD 777

Query: 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497
            L  L+P H+G +VLLSN+YA + RW  V++VR+ M +    K  G SLVE  N+V +F 
Sbjct: 778 HLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFG 837

Query: 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFM 557
           +GDRSHPQ E+++A L E+   +K  GYVP T+ V  DIEEE KE ALSYHSE++AIAF 
Sbjct: 838 VGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFG 897

Query: 558 LVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+NT+PGT +R+ KNLR+C DCH AIKLISK+ +R I+VRD  RFH F+DG CSC DYW
Sbjct: 898 LINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 170/386 (44%), Gaps = 51/386 (13%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL--IYAIVSLSFPMSYAHNIFSHV 103
           + L Q C + +  + Q+H+   + G+ L++      L  +YA  +    +  A  +F   
Sbjct: 8   VDLFQACNNGR-SVSQLHSQVFKTGI-LHDTFFATKLNSLYAKCA---SLQAARKVFDET 62

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
             PN+  WN+ +R Y         + L+  M   +G  PD  T P  LKA + L  + +G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 163 EQTHSVAIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           +  H  A +N    S +FV ++LV +Y+  G + +A KVFE     D V W S++ G+  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           N  P EAL LF +M           M+  F                          ++ +
Sbjct: 183 NNDPEEALALFSQM----------VMMDCFDG------------------------DLPL 208

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            N+LL+ Y+K G    A  +F +M +++ +SWST++   A N    EAL LF EM    F
Sbjct: 209 VNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 268

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  VT V  L AC+    ++EG    K       +   +  +  ++    + G+  ++ 
Sbjct: 269 EPNSVTVVSALQACAVSRNLEEGKKIHK-----IAVWKDVVSWVALLSGYAQNGMAYKSM 323

Query: 402 EYIQNML---MPPNAVIWRTLLGACT 424
              +NML   + P+AV    +L A +
Sbjct: 324 GVFRNMLSDGIQPDAVAVVKILAASS 349



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 35/241 (14%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+FS + + ++ +W+TMI  YA +     A+ L+ +M     +P++ T    L+A + 
Sbjct: 225 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV 284

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             ++  G++ H +A+                                    +D+V+W ++
Sbjct: 285 SRNLEEGKKIHKIAVW-----------------------------------KDVVSWVAL 309

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++G+A NG   +++ +FR M S+G++PD   +V + +A +ELG        H YV + G 
Sbjct: 310 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGF 369

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + NV V  +L++ YSKCG +  A ++F+ M  R+ V WS+++    ++G G EALE+F +
Sbjct: 370 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 429

Query: 336 M 336
           M
Sbjct: 430 M 430



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 8/189 (4%)

Query: 84  YAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +AI+ +SF  +  A  +F  + +P  F WN MIRG+A     L ++ELYSKM   G+KPD
Sbjct: 517 FAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPD 576

Query: 143 TH-------TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
                    +   +L A   L  +R GE  HS  I+ GFE  + V  +++ MY+  G + 
Sbjct: 577 NSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 636

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
            A  +F+  + +DLV W+++I  +  +G   +A+ LF +M   GV P   T   + SAC+
Sbjct: 637 LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 696

Query: 256 ELGALALGR 264
             G L  G+
Sbjct: 697 HSGLLEEGK 705


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/439 (44%), Positives = 289/439 (65%), Gaps = 3/439 (0%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +F  N ++      G    A KVF  MS RD+V WNS+I G+  N +  +AL++FR M S
Sbjct: 134 LFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLS 193

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             VEPDG+T  S+ +ACA LGAL   +  H  + +  +  N  ++ AL+D Y+KCG I  
Sbjct: 194 AKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDV 253

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +++VF E+ + +   W+ ++ GLA++G   +A  +F  ME+   +P  +TF+G+L ACSH
Sbjct: 254 SRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSH 313

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
           CG+V+EG  YF  M++ + I P++EH+G MVDLLGRAGL+++AY  I+ M M P+ VIWR
Sbjct: 314 CGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWR 373

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LL AC IH    + E+A + + +LE   SGD+VLLSN+Y     W   + VRR M    
Sbjct: 374 ALLSACRIHRKKELGEVAIANISRLE---SGDFVLLSNMYCSLNNWDGAERVRRMMKTRG 430

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           V+K+ G S VELG+ + +F    +SHP+ + I+ +L  + ++ KLEG+ P T+ V  D+ 
Sbjct: 431 VRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVS 490

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEKE+ L +HSEK+A+A+ ++ T+PGT +R+ KNLR+C DCH  IK++SK+ +R+I+VR
Sbjct: 491 EEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNRKIIVR 550

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           DR RFH F+ G CSC+DYW
Sbjct: 551 DRIRFHQFEGGVCSCKDYW 569



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 134/288 (46%), Gaps = 15/288 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ TWN+MI GY  +     A+ ++ +M  + ++PD  T+  ++ A ++
Sbjct: 153 AKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACAR 212

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +   +  H + +    E    +  +L+ MYA  G +  + +VFE ++   +  WN++
Sbjct: 213 LGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAM 272

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVG 274
           I+G A +G   +A  +F  M  E V PD  T + + +AC+  G +  GR+    +  +  
Sbjct: 273 ISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFM 332

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVNG---FGKEAL 330
           +   +     ++D   + G++  A  V +EMR   + V W  L+    ++     G+ A+
Sbjct: 333 IQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAI 392

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD-EGFSYFKRMKDEYGI 377
                +E G F         VL +  +C + + +G    +RM    G+
Sbjct: 393 ANISRLESGDF---------VLLSNMYCSLNNWDGAERVRRMMKTRGV 431


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/429 (46%), Positives = 278/429 (64%)

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           +A  G V    K+F+ M ERD+++WN+++  +  NGK  EAL  F+ M   G+ PD  T+
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
           V++ SA A+L  L  G+  H+ +  + L   +++  ALLD Y+KCG I  ++ +F  M +
Sbjct: 65  VTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPR 124

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           R+  +W+ ++ GLA +G GK+AL LF+     G  P  VTFVGVL ACS  G+V EG  Y
Sbjct: 125 RDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHY 184

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F+ M D YGI P++EH+GCMVDLLGRAGLV +A + I++M + P+ V+W  +L AC IHG
Sbjct: 185 FQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHG 244

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
            + + E   + L++L+P + G YV L+++YA  ++W +V  VRR M +    K  G SL+
Sbjct: 245 LAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLI 304

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E   +V  F  G R H Q+ EI  ML  I  +L   GYVP    V  DI EEEKE+A+  
Sbjct: 305 EARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKV 364

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSE++AIAF L+ T PG+ +R+VKNLRVC DCH   K+IS+V+ REI+VRD SRFHHFK+
Sbjct: 365 HSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKE 424

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 425 GKCSCLDYW 433



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 2/237 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S    +F  + + ++ +WNTM+  Y  +     A+E + +M  SG+ PD  T   +L A
Sbjct: 11  VSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSA 70

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L  +  G+  HS+         + +  +L+ MYA  G ++ +  +FE M  RD+  W
Sbjct: 71  SAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTW 130

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW- 271
           N +I G AS+G   +ALTLF    +EG+ P   T V + +AC+  G +  GR     +  
Sbjct: 131 NVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTD 190

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGK 327
             G+   +     ++D   + G++  A +V   M    + V W+ ++    ++G  +
Sbjct: 191 SYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAE 247



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +L  +++ G +   Q++F EM +R+ +SW+T+++    NG   EALE FK M   G VP 
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E T V +L A +   +++ G S    + D   +   I     ++D+  + G ++Q+    
Sbjct: 61  EATLVTMLSASAQLCLLEHGQS-IHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLF 119

Query: 405 QNMLMPPNAV-IWRTLLGACTIHG 427
           +N  MP   V  W  ++     HG
Sbjct: 120 EN--MPRRDVSTWNVMICGLASHG 141


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 330/557 (59%), Gaps = 3/557 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           + VH +S++ G  ++   L   L+    + S   S  + IF ++   N+ +W  MI  Y 
Sbjct: 317 RVVHGYSVKTGF-ISQTSLANVLLDMYSNCSDWRS-TNKIFRNMVQKNVVSWTAMITSYT 374

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
            +        L+ +M + G +PD       L A +    ++ G+  H  AIRNG E ++ 
Sbjct: 375 RAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLA 434

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+L+ MY   G++++A  +F+ +  +D+++WN++I G++ N   NEA +LF EM  + 
Sbjct: 435 VTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ- 493

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           + P+  TM  +  A A L +L  GR  H Y  + G  ++  V NAL+D Y KCG ++ A+
Sbjct: 494 LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLAR 553

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           R+F  +  +N +SW+ +V G  ++G G++A+ LF++M + G  P   +F  +LYACSH G
Sbjct: 554 RLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           + DEG+ +F  M+ E+ I P+++H+ CMVDLL   G +K+AYE+I +M + P++ IW +L
Sbjct: 614 LRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSL 673

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           L  C IH +  +AE     + +LEP+++G YVLL+N+YA  +RW  V++++  +    ++
Sbjct: 674 LRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLR 733

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           +  G S +E   +V  F   +R+HPQ   I   L E+ K+++ EG+ P+ +      +  
Sbjct: 734 ENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNA 793

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
              +AL  HS K+A+AF ++N + G  +RV KN RVC+ CH A K ISK+ SREI++RD 
Sbjct: 794 VHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDS 853

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFHHF+ G CSCR YW
Sbjct: 854 NRFHHFEQGRCSCRGYW 870



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 187/373 (50%), Gaps = 13/373 (3%)

Query: 78  LGKYLIYAIVSLSFPMSYAHNIFSHV-QDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136
           LG+ L+   +     +  A  +F  + Q  ++  W  ++ GYA++ +    V L+ KMH 
Sbjct: 131 LGQKLVLMYLKCG-DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC 189

Query: 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
            G++PD +T   +LK I+ L  +  GE  H +  + GF S   V N+L+  YA     KD
Sbjct: 190 CGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD 249

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A  VF+ M  RD+++WNS+I+G  SNG  ++A+ LF  M  EG E D  T++S+  ACAE
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAE 309

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
           L  L LGR  H Y  K G     ++ N LLD YS C    +  ++FR M ++N VSW+ +
Sbjct: 310 LHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAM 369

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           +      G   +   LF+EM + G  P        L+A +   ++  G S        Y 
Sbjct: 370 ITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHG-----YA 424

Query: 377 IMPKIEHF----GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           I   +E        ++++  + G +++A + I + ++  + + W TL+G  + +  +  A
Sbjct: 425 IRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLIGGYSRNNLANEA 483

Query: 433 -EIARSTLLQLEP 444
             +    LLQL P
Sbjct: 484 FSLFTEMLLQLRP 496



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I     +G   EAL L   + S+GV+   Y  V     C+E+ +L  G+RAH  V    L
Sbjct: 68  IQRLCRSGDLEEALGL---LGSDGVDDRSYGAV--LQLCSEVRSLEGGKRAHFLVRASSL 122

Query: 276 S----DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLAVNGFGKEAL 330
                DNV +   L+  Y KCG +  A+RVF EM + + V  W+ L+ G A  G  +E +
Sbjct: 123 GRDGMDNV-LGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGV 181

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            LF++M   G  P   T   VL   +  G +++G      + ++ G   +      ++  
Sbjct: 182 LLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG-EVVHGLLEKLGFGSQCAVGNALMAF 240

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHG 427
             ++   K A        MP   VI W +++  CT +G
Sbjct: 241 YAKSNRTKDAILVFDG--MPHRDVISWNSMISGCTSNG 276



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
            +V   CI       SS  + +++HA+++R G  L +  +   LI   V     +  A  
Sbjct: 497 NAVTMTCILPAAASLSSLERGREMHAYALRRGY-LEDDFVANALIDMYVKCG-ALLLARR 554

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
           +F  + + N+ +W  M+ GY        A+ L+ +M VSGI PD  ++  +L A S
Sbjct: 555 LFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 328/571 (57%), Gaps = 4/571 (0%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           T L  C + +  LK VHAF I  G+  +N  +G  L+         M+ A  +   + D 
Sbjct: 367 TALSACYNLE-TLKIVHAFVILLGLH-HNLIIGNALVTMYGKFG-SMAAAQRVCKIMPDR 423

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV-RMGEQT 165
           +  TWN +I G+A++  P  A+E ++ +   G+  +  T   LL A     D+   G   
Sbjct: 424 DEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPI 483

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+  +  GFE   FVQ+SL+ MYA  G +  +  +F++++ ++   WN++++  A  G  
Sbjct: 484 HAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPG 543

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL L  +M ++G+  D ++     +    L  L  G++ H+ + K G   N  V NA 
Sbjct: 544 EEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNAT 603

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D Y KCG I    R+  + R R+  SW+ L+  LA +GF ++A E F EM   G  P  
Sbjct: 604 MDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDH 663

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFV +L ACSH G+VDEG +YF  M  ++G+   IEH  C++DLLGRAG + +A  +I 
Sbjct: 664 VTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFIN 723

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M +PP  ++WR+LL AC IHG+  +A  A   L +L+      YVL SN+ A  +RW +
Sbjct: 724 KMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRD 783

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
           V+ VR+ M    +KK P  S V+L N+V  F MGD+ HPQ  EI+A L E+ K ++  GY
Sbjct: 784 VENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGY 843

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           +P T     D +EE+KE  L  HSE+IA+AF L+N++ G+P+R+ KNLRVC DCH   K+
Sbjct: 844 MPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKM 903

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +S++  R+I++RD  RFHHF  G CSC DYW
Sbjct: 904 VSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 17/367 (4%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           QVHA  I+ G+  +   +G  L++   +  + ++    +F  +++PNI +W +++ GYA 
Sbjct: 80  QVHAHVIKCGLACD-VFVGTSLLHFYGTFGW-VAEVDMVFKEIEEPNIVSWTSLMVGYAY 137

Query: 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
           +      + +Y ++   G+  + +    ++++   L D  +G Q     I++G ++ V V
Sbjct: 138 NGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSV 197

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
            NSL+ M+     +++A  VF+ M ERD ++WNS+I     NG   ++L  F +M     
Sbjct: 198 ANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHA 257

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           + D  T+ +L   C     L  GR  H  V K GL  NV V N+LL  YS+ G    A+ 
Sbjct: 258 KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEF 317

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF +MR+R+ +SW++++     NG    ALEL  EM         VTF   L AC +   
Sbjct: 318 VFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLET 377

Query: 361 VDEGFSYFKRMKDEYGIMPKIEH----FGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVI 415
           +        ++   + I+  + H       +V + G+ G +  A    +  +MP  + V 
Sbjct: 378 L--------KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCK--IMPDRDEVT 427

Query: 416 WRTLLGA 422
           W  L+G 
Sbjct: 428 WNALIGG 434



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 164/337 (48%), Gaps = 3/337 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + +A ++F  + + N  +WN ++ G+        A++ +  M   G++P ++    L+ A
Sbjct: 8   IEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTA 67

Query: 153 ISKLADVRMGE-QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             +   +  G  Q H+  I+ G    VFV  SL+H Y  FG V +   VF+ + E ++V+
Sbjct: 68  CDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVS 127

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W S++ G+A NG   E ++++R +  +GV  +   M ++  +C  L    LG +    V 
Sbjct: 128 WTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVI 187

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K GL   V+V N+L+  +  C  I  A  VF +M++R+ +SW++++     NG  +++LE
Sbjct: 188 KSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLE 247

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            F +M         +T   +L  C     +  G      M  + G+   +     ++ + 
Sbjct: 248 YFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRG-LHGMVVKSGLESNVCVCNSLLSMY 306

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            +AG  + A E++ + +   + + W +++ +   +G+
Sbjct: 307 SQAGKSEDA-EFVFHKMRERDLISWNSMMASHVDNGN 342



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 190/416 (45%), Gaps = 42/416 (10%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LL VC S+++    + +H   ++ G+  N       L  ++ S +     A  +F  +++
Sbjct: 267 LLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLL--SMYSQAGKSEDAEFVFHKMRE 324

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ +WN+M+  + ++ N   A+EL  +M  +    +  T+   L A   L  +++    
Sbjct: 325 RDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---V 381

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+  I  G    + + N+LV MY  FG +  A +V ++M +RD V WN++I G A N +P
Sbjct: 382 HAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEP 441

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSA-CAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
           N A+  F  +  EGV  +  T+V+L SA  +    L  G   H ++   G      V ++
Sbjct: 442 NAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSS 501

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+  Y++CG +  +  +F  +  +N+ +W+ ++   A  G G+EAL+L  +M   G    
Sbjct: 502 LITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLD 561

Query: 345 EVTFVGVLYACSHCGMVDEG-------------------------FSYFKRMKDEYGIMP 379
           + +F        +  ++DEG                         +     + D + I+P
Sbjct: 562 QFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILP 621

Query: 380 K-----IEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
           +        +  ++  L R G  +QA E    ML   + P+ V + +LL AC+ HG
Sbjct: 622 QPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACS-HG 676



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 14/285 (4%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY+ FG ++ A  VF+ M ER+  +WN++++GF   G   +A+  F  M   GV P  Y 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 247 MVSLFSACAELGALALGR-RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
             SL +AC   G +  G  + H +V K GL+ +V V  +LL FY   G +     VF+E+
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
            + N VSW++L+VG A NG  KE + +++ +   G    E     V+ +C    +VD+  
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCG--VLVDKML 178

Query: 366 SY-FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
            Y       + G+   +     ++ + G    +++A     +M    + + W +++ A  
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDM-KERDTISWNSIITASV 237

Query: 425 IHGHSAIAEIARSTLLQLEPKHS-GDYVLLSNLY-----AYEQRW 463
            +GH    E +     Q+   H+  DY+ +S L      A   RW
Sbjct: 238 HNGH---CEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRW 279


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 356/634 (56%), Gaps = 55/634 (8%)

Query: 33  SQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVP------LNNPDLGKYLIY 84
           S+   ++SV R    LL+ CA  SS    +++HA  I  G+       L+N  L     Y
Sbjct: 4   SRHTALSSVSRHYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQ---FY 60

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
           A    ++      +   H     +  W T++  +        A+ ++ +M   G+KPD  
Sbjct: 61  ASCGCAWQARKVFDEIPHSHKDTV-DWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEV 119

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK----- 199
           T   L    ++L DV +G Q H   ++ G   +    N+++ MYA  G + +A +     
Sbjct: 120 TLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEM 179

Query: 200 --------------------------VFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
                                     VF+ M ER+ VAW  +I G+  +G   E+  L R
Sbjct: 180 KGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVR 239

Query: 234 EMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSK 291
           EM  +  +E +  T+ S+ +AC++ G L +GR  H Y  K    + N+ V  A++D Y+K
Sbjct: 240 EMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAK 299

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG I  A + F++M +RN VSW+ ++ GLA++G G+ AL++F +M      P +VTF  V
Sbjct: 300 CGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQM-FKEAKPDDVTFTSV 358

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L ACSH G+VD+G  YF  ++  YGI PK+EH+ CMVDLLGRAG +++A   ++ M + P
Sbjct: 359 LSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRP 418

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           N V+  +LLG+C+IHG   + E     L+QL+P+++  ++LLSN+YA   +      +R+
Sbjct: 419 NEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQ 478

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE- 530
            + K  +KK PG S + +G +V +F  GD+SHP+T E++ ML E+  +L+L GY P T  
Sbjct: 479 VLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTAL 538

Query: 531 NVFAD--------IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
             FA         +E+EEKE AL  HSEK+AI F L++T PG P+ + KNLR+C DCH A
Sbjct: 539 QTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSA 598

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK++SK+Y+REIV+RDR+RFH FK+G CSC DYW
Sbjct: 599 IKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 308/521 (59%), Gaps = 37/521 (7%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV----RMGEQTHS 167
           N +IR  A SA P LA+ LY+ +  +G  P  HT P LLK+++    V     +    H+
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 168 VAIRNGFESLVFVQNSLVHM--------------------------------YAAFGHVK 195
            A++ G    + V N+L+ +                                YA  G V 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           DA  +F+ M  R+ V+W++++NG+   G   EAL LF  M ++GV PD   +V + +ACA
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           +LG L  G+  H Y+    +   V +  AL+D Y+KCG +  A  VF+ M+++N ++W+T
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ GLA++G G EALELF +ME  G  P ++ F+G L AC+H G+VD+G   F  M  +Y
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           GI PKIEH+GCMVDLL R GL+ +A E ++ M M P+A+IW  L+  C  H +  +AE  
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
               ++LEP  SG YVLL N+YA   R  + +E+R  M ++ V KTPG S VE+   + +
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKL-EGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           F +GD SHP  EEI +   EI  +++L EGYVP  + V  DIEEEEKE+ALS HSEK+AI
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAI 654

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           AF L+NT+   P+R+VKNLRVC DCH   KLISKV+   +V
Sbjct: 655 AFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 322/527 (61%), Gaps = 6/527 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTHTYPFLLKAI 153
           A   F  +Q  N  TWN M+  Y        A+EL+ +M       +PD  ++   ++A 
Sbjct: 85  ARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEAC 144

Query: 154 SKLADVRMGEQTHSVAIRNGFE--SLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERDLV 210
           S L D+  G + H +  R G E    V V  +L++MY+  G +++A KVF+ +  + D V
Sbjct: 145 SNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSV 204

Query: 211 AWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
            WN++I  +A +G+  +AL L+R M  +  + P   T V++   CAEL AL  GR  H  
Sbjct: 205 CWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHAR 264

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V       N+ V+NAL+  Y KCG +  A  VF  M+ ++ +SW+T++   A +G   +A
Sbjct: 265 VRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQA 324

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           L L++EM++ G  P EVTFVG+L ACSH G+V +G  YF RM+D++ I P + HFGC++D
Sbjct: 325 LLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIID 384

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGR G + +A   +++M +  NAV W +LLGAC  HG       A   ++   P  SG 
Sbjct: 385 LLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGG 444

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA   RW +V+++R+ M    VKK+PG S +E+G+ V EF  GDRSHPQ EEI
Sbjct: 445 YVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEI 504

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L ++ +++K  GYVP T +VF D+EEEEKED L  HSEK+AI +  +     + +R+
Sbjct: 505 YVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRI 564

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLRVC DCH A K +S++  R+IVVRD +RFH F++G CSCRDYW
Sbjct: 565 VKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 9/248 (3%)

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL--GRRAHTYVWKVGLS 276
           F+ NG  +EAL  FR M   G  PD  T   + +A A++GA A+  GR  H Y    GL 
Sbjct: 4   FSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL 63

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            NV V  A++  Y KCG +  A+  F E++ +N+V+W+ ++    ++G  +EALELF+EM
Sbjct: 64  PNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 123

Query: 337 --EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CMVDLLGR 393
                   P + +F   + ACS+   +++G    + ++ E   + K    G  ++++  +
Sbjct: 124 CERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSK 183

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA-EIARS--TLLQLEPKHSGDY 450
            G +++A +   ++    ++V W  ++ A   HG    A ++ RS      L PK  G +
Sbjct: 184 CGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQ-GTF 242

Query: 451 VLLSNLYA 458
           V + ++ A
Sbjct: 243 VTVIDVCA 250


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 326/571 (57%), Gaps = 4/571 (0%)

Query: 47   TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
            T L  C + + KLK VHAF I   V  +N  +G  L+         M  A  +   + + 
Sbjct: 558  TALSACYNLE-KLKIVHAFVIHFAVH-HNLIIGNTLVTMYGKFGL-MDEAQKVCKIMPER 614

Query: 107  NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL-KAISKLADVRMGEQT 165
            ++ TWN +I G+A+  +P   ++ ++ M   G+  +  T   LL   +S    ++ G   
Sbjct: 615  DVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPI 674

Query: 166  HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
            H+  +  GFE   +VQ+SL+ MYA  G +  +  +F++++ ++   WN++ +  A  G  
Sbjct: 675  HAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPG 734

Query: 226  NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
             EAL     M ++GV+ D ++     +    L  L  G++ H+++ K+G   +  V NA 
Sbjct: 735  EEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNAT 794

Query: 286  LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
            +D Y KCG I    R+    + R+  SW+ L+  LA +GF ++A E F EM   G  P  
Sbjct: 795  MDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDH 854

Query: 346  VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            VTFV +L ACSH G+VDEG  YF  M  E+G+   IEH  C++DLLGR+G + +A  +I 
Sbjct: 855  VTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFID 914

Query: 406  NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
             M +PPN  +WR+LL AC +HG+  +   A   L +L       YVL SN+ A  QRW +
Sbjct: 915  KMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGD 974

Query: 466  VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
            V+ VR+ M  + +KK P  S ++L N+V  F MGD+ HPQ+ +I+A L E+ K  + EG+
Sbjct: 975  VENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGH 1034

Query: 526  VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
            +P T     D +EE+KE  L  HSE+IA+AF L+N+A G+P+R+ KNLRVC DCH   KL
Sbjct: 1035 MPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKL 1094

Query: 586  ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +SK+  R+IVVRD  RFHHF  G CSC DYW
Sbjct: 1095 VSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 183/388 (47%), Gaps = 10/388 (2%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           P + V+   +T            +Q+H + ++ G+ ++N  +G  L++        +S A
Sbjct: 246 PSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGL-MSNVFVGTSLLH-FYGTHGSVSEA 303

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
           + +F  +++PNI +W +++  YA++ +    + +Y  +  +G+    +T   +++     
Sbjct: 304 NKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMF 363

Query: 157 ADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
            D  MG Q     I++G + S V V NSL+ M+  +  V++A +VF  M ERD ++WNS+
Sbjct: 364 GDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSI 423

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I   A NG+  E+L  F  M     + D  T+ +L  AC     L  GR  H  + K GL
Sbjct: 424 ITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGL 483

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             NV V N+LL  Y++ G    A+ VF  M  R+ +SW++++     +G    A+ L  E
Sbjct: 484 ESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVE 543

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M         VTF   L AC +     E           + +   +     +V + G+ G
Sbjct: 544 MLKTRKAMNYVTFTTALSACYNL----EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFG 599

Query: 396 LVKQAYEYIQNMLMPP-NAVIWRTLLGA 422
           L+ +A +  +  +MP  + V W  L+G 
Sbjct: 600 LMDEAQKVCK--IMPERDVVTWNALIGG 625



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 6/311 (1%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           FL K  S++++  +G+  H++ +++  +   F  N+LV+MY+ FG +K A  VF+ M +R
Sbjct: 152 FLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDR 211

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-RRA 266
           +  +WN++I+GF   G  ++A+  F  M   GV P  Y + S+ +AC   G +  G R+ 
Sbjct: 212 NDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQI 271

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H YV K GL  NV V  +LL FY   G +  A ++F E+ + N VSW++L+V  A NG  
Sbjct: 272 HGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHT 331

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           KE L +++ +   G +    T   V+  C   G    G+     +         +     
Sbjct: 332 KEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANS 391

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           ++ + G    V++A     NM    + + W +++   T   H+   E +      +   H
Sbjct: 392 LISMFGNYDSVEEASRVFNNM-QERDTISWNSII---TASAHNGRFEESLGHFFWMRRTH 447

Query: 447 -SGDYVLLSNL 456
              DY+ +S L
Sbjct: 448 PKTDYITISAL 458



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 133/265 (50%), Gaps = 2/265 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + YA ++F  + D N  +WN MI G+        A++ +  M  +G+ P ++    ++ A
Sbjct: 198 IKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTA 257

Query: 153 ISKLADVRMG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             +   +  G  Q H   ++ G  S VFV  SL+H Y   G V +A K+FE + E ++V+
Sbjct: 258 CDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVS 317

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W S++  +A NG   E L ++R +   G+   G TM ++   C   G   +G +    V 
Sbjct: 318 WTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVI 377

Query: 272 KVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
           K GL + +V+V N+L+  +     +  A RVF  M++R+ +SW++++   A NG  +E+L
Sbjct: 378 KSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESL 437

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYAC 355
             F  M         +T   +L AC
Sbjct: 438 GHFFWMRRTHPKTDYITISALLPAC 462



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 182/417 (43%), Gaps = 44/417 (10%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQ 104
           LL  C S++H    + +H    + G+  N       L +YA    S     A  +F  + 
Sbjct: 458 LLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSS---EDAELVFHTMP 514

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++ +WN+M+  + E      A+ L  +M  +    +  T+   L A   L  +++   
Sbjct: 515 ARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI--- 571

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H+  I       + + N+LV MY  FG + +A KV ++M ERD+V WN++I G A +  
Sbjct: 572 VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKD 631

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNN 283
           PN  +  F  M  EG+  +  T+V+L   C      L  G   H ++   G   +  V +
Sbjct: 632 PNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQS 691

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  Y++CG +  +  +F  +  +N+ +W+ +    A  G G+EAL+    M   G   
Sbjct: 692 SLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDL 751

Query: 344 GEVTFVGVLYACSHCGMVDEG---FSYFKRMK---DEYGIMPKIEHFG------------ 385
            + +F   L    +  ++DEG    S+  ++    DEY +   ++ +G            
Sbjct: 752 DQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRIL 811

Query: 386 ------------CMVDLLGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
                        ++  L R G  +QA E    ML   + P+ V + +LL AC+ HG
Sbjct: 812 PIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACS-HG 867


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 334/577 (57%), Gaps = 34/577 (5%)

Query: 47  TLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           TLL +CA+ ++  + +Q+HA  IR  +  N   + +  +  + S    ++YA  IF+ + 
Sbjct: 283 TLLTLCANQRNDNQGRQIHAHLIRANITKN--IIVETELVHMYSECGRLNYAKEIFNRMA 340

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           + N ++WN+MI GY ++     A+ L+ +M ++GIKPD  +   +L +   L+D + G +
Sbjct: 341 ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 400

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASN 222
            H+  +RN  E    +Q  LV MYA  G +  A KV++  +  +R+   WNS++ G+A+ 
Sbjct: 401 LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANK 460

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G   E+   F EM    +E D  TMV++ +                            + 
Sbjct: 461 GLKKESFNHFLEMLESDIEYDVLTMVTIVNLLV-------------------------LE 495

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
            AL+D YSKCG I  A+ VF  M  +N VSW+ ++ G + +G  KEAL L++EM   G  
Sbjct: 496 TALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMY 555

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P EVTF+ +L ACSH G+V+EG   F  M+++Y I  K EH+ CMVDLLGRAG ++ A E
Sbjct: 556 PNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKE 615

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +++ M + P    W  LLGAC +H    +  +A   L +L+P++ G YV++SN+YA   R
Sbjct: 616 FVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGR 675

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W  V+++R+ M  + VKK PG S +E+ + +  F  G ++HP+TEEI+  L  +T + K 
Sbjct: 676 WKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKG 735

Query: 523 EGYVPRTENVFADIEEEEKEDALSY---HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
            GY+P T  +  ++++ ++E+   Y   HSE++A++  L++    + +RV KNLR+C DC
Sbjct: 736 LGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDC 795

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A K ISK+  R I+ RD +RFHHF++G CSC DYW
Sbjct: 796 HTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 209/409 (51%), Gaps = 28/409 (6%)

Query: 28  HSTPASQENPI--TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPD---LGKYL 82
           H+ PAS  NP+  +S+++ CI      ++S  + K +H   I +G    NPD   + K L
Sbjct: 62  HTKPASDVNPLPYSSLIQDCID-----SNSFQRGKSIHTQMISNGY---NPDAYLMTKIL 113

Query: 83  -IYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
            +YA       + YA  +F  + + N+  WNTMI  YA   + + A  ++ +M   G+ P
Sbjct: 114 MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCP 173

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D  T+   L+    L     G+Q HS  I  GF+   FV N+L+ MYA     +   KVF
Sbjct: 174 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 233

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGA 259
           + M ER+ V WNS+I+  A  G  N+AL LF  M  + +G++PD +T  +L + CA    
Sbjct: 234 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRN 293

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
              GR+ H ++ +  ++ N+ V   L+  YS+CG +  A+ +F  M +RNA SW++++ G
Sbjct: 294 DNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEG 353

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC-----SHCGMVDEGFSYFKRMKDE 374
              NG  +EAL LFK+M++ G  P   +   +L +C     S  G     F     M++E
Sbjct: 354 YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 413

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYE-YIQNMLMPPNAVIWRTLLGA 422
            GI+  +     +VD+  + G +  A++ Y Q +    N  +W ++L  
Sbjct: 414 -GILQVV-----LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/522 (38%), Positives = 306/522 (58%), Gaps = 36/522 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ TWN MI GY ++  P   ++L+ +M VS +KPD  T   +L A   
Sbjct: 209 ARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA--- 265

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                           Y   G++ +A KVF  + E+D V W  +
Sbjct: 266 --------------------------------YIQAGYIDEARKVFGEIREKDEVCWTIM 293

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G A NGK  +AL LF EM  E   PDGYT+ S+ S+CA+L +L  G+  H   + +G+
Sbjct: 294 IVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGV 353

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           +D++ V++AL+D Y KCG+   A  +F  M+ RN VSW++++ G A+NG   EAL L++ 
Sbjct: 354 NDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYEN 413

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P  VTFVGVL AC H G+V+EG  YF  M D++G+ P  +H+ CMV+L GR+G
Sbjct: 414 MLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSG 473

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            + +A + I +M   PN++IW T+L  C + G     E+A   L++L P ++  Y++LSN
Sbjct: 474 HMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSN 533

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +V  +R  M  + VKK   +S +E+ N V +F   DR+HP  + IH  L  
Sbjct: 534 MYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNR 593

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG-TPVRVVKNLR 574
           + +KL+  G+ P T  V  D  E+EK ++++YHSEK+A+A+ L+    G TP+R++KN+R
Sbjct: 594 LIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIR 653

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            CADCH+ +K +S +  R +++RD +RFHHF +G CSC+DYW
Sbjct: 654 TCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 142/265 (53%), Gaps = 13/265 (4%)

Query: 127 AVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV----FVQ 181
           A  L S MH+   KP DT  +  LL   +K      GE +H+   R  F+ +     F  
Sbjct: 41  AKRLKSHMHLHLFKPNDTFIHNRLLNLYAK-----SGEISHA---RKLFDEMTQRDNFSW 92

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N+++ +YA  G V+D   +F+ M  RD V++N+VI+GFA NG+   AL +F  M  EG++
Sbjct: 93  NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLK 152

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P  YT VS+ +AC +L  L  G++ H  +    L  NV V NAL D Y++CG I  A+R+
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F  M  RN V+W+ ++ G   N   ++ ++LF EM++    P +VT   VL A    G +
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGC 386
           DE    F  ++++  +   I   GC
Sbjct: 273 DEARKVFGEIREKDEVCWTIMIVGC 297



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 47/336 (13%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF ++   +  ++NT+I G+A +     A+ ++ +M   G+KP  +T+  +L A ++L D
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +R G+Q H   I       VFV N+L  +YA  G +  A ++F+ M  R++V WN +I+G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  N +P + + LF EM    ++PD  T  S+  A                         
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA------------------------- 265

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
                     Y + G I  A++VF E+R+++ V W+ ++VG A NG  ++AL LF EM +
Sbjct: 266 ----------YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLL 315

Query: 339 GGFVPGEVTFVGVLYACS-----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
               P   T   V+ +C+     + G V  G ++   + D+  +         +VD+  +
Sbjct: 316 ENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVS------SALVDMYCK 369

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
            G+ + A+     M    N V W +++G   ++G  
Sbjct: 370 CGVTRDAWTIFSTM-QTRNVVSWNSMIGGYALNGQD 404



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 18/283 (6%)

Query: 44  KCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           KCI L      S  K  QV A S+          LG Y+    +        A  +F  +
Sbjct: 239 KCIDLFHEMQVSNLKPDQVTASSV----------LGAYIQAGYID------EARKVFGEI 282

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           ++ +   W  MI G A++     A+ L+S+M +   +PD +T   ++ + +KLA +  G+
Sbjct: 283 REKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQ 342

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
             H  A   G    + V ++LV MY   G  +DA  +F  M  R++V+WNS+I G+A NG
Sbjct: 343 VVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNG 402

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVGLSDNVNVN 282
           +  EAL+L+  M  E ++PD  T V + SAC   G +  G+     +  + GL    +  
Sbjct: 403 QDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHY 462

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVNG 324
             +++ + + G +  A  +   M +  N++ W+T++    + G
Sbjct: 463 ACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKG 505


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 308/521 (59%), Gaps = 37/521 (7%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR----MGEQTHS 167
           N +IR  A SA P LA+ LY+ +  +G  P  HT P LLK+++    V     +    H+
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 168 VAIRNGFESLVFVQNSLVHM--------------------------------YAAFGHVK 195
            A++ G    + V N+L+ +                                YA  G V 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           DA  +F+ M  R+ V+W++++NG+   G   EAL LF  M ++GV PD   +V + +ACA
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           +LG L  G+  H Y+    +   V +  AL+D Y+KCG +  A  VF+ M+++N ++W+T
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ GLA++G G EALELF +ME  G  P ++ F+G L AC+H G+VD+G   F  M  +Y
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           GI PKIEH+GCMVDLL R GL+ +A E ++ M M P+A+IW  L+  C  H +  +AE  
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
               ++LEP  SG YVLL N+YA   R  + +E+R  M ++ V KTPG S VE+   + +
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKL-EGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
           F +GD SHP  EEI +   EI  +++L EGYVP  + V  DIEEEEKE+ALS HSEK+AI
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAI 654

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           AF L+NT+   P+R+VKNLRVC DCH   KLISKV+   +V
Sbjct: 655 AFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 316/560 (56%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q+H F I+        D   Y+  A+V +      +  A  +F  +   ++  WN +I 
Sbjct: 325 RQIHGFMIK-----ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALIS 379

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G +       ++ L+ +M   G   +  T   +LK+ + L  +    Q H++A + GF S
Sbjct: 380 GCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLS 439

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N L+  Y     ++ A KVFE  S  +++A+ S+I   +      +A+ LF EM 
Sbjct: 440 DSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEML 499

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            +G+EPD + + SL +ACA L A   G++ H ++ K     +V   NAL+  Y+KCG I 
Sbjct: 500 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIE 559

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A   F  +  +  VSWS ++ GLA +G GK AL++F+ M      P  +T   VL AC+
Sbjct: 560 DADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACN 619

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H G+VDE   YF  MK+ +GI    EH+ CM+DLLGRAG +  A E + +M    NA +W
Sbjct: 620 HAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVW 679

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             LL A  +H    + ++A   L  LEP+ SG +VLL+N YA    W  V +VR+ M   
Sbjct: 680 GALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDS 739

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
           +VKK P  S VEL +RV  F +GD+SHP+  +I+A L E+   +   GYVP  E    D+
Sbjct: 740 KVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDV 799

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           ++ EKE  LS+HSE++A+AF L++T  G P+RV KNLR+C DCH+A K ISK+ SREI++
Sbjct: 800 DKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIII 859

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD +RFHHF DG CSC DYW
Sbjct: 860 RDINRFHHFSDGACSCGDYW 879



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 171/347 (49%), Gaps = 25/347 (7%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F    DP   +W++++  Y+ +A P  A+  +  M   G++ +    P +LK    
Sbjct: 56  ARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP- 114

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDLVAWNS 214
             D  +G Q H+VA+  G    +FV N+LV MY  FG V +A +VF E   +R+ V+WN 
Sbjct: 115 --DAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNG 172

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +++ F  N + ++A+ LF EM   GV P+ +    + +AC     L  GR+ H  V + G
Sbjct: 173 MMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTG 232

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V   NAL+D YSK G I  A  VF ++ K + VSW+  + G  ++G  + ALEL  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI-----EHFG-CMV 388
           +M+  G VP   T   +L A         G   F   +  +G M K      ++ G  +V
Sbjct: 293 QMKSSGLVPNVFTLSSILKA-----CAGAGAGAFALGRQIHGFMIKACADSDDYIGVALV 347

Query: 389 DLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACT---IHGHS 429
           D+  + GL+  A   +E+I       + ++W  L+  C+    HG S
Sbjct: 348 DMYAKYGLLDDARKVFEWIPR----KDLLLWNALISGCSHGGCHGES 390



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 182/395 (46%), Gaps = 16/395 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN---IFSHVQDPNIFTWNTMIR 116
           ++VHA  +R G      D   +   A+V +   +   H    +F  V   ++ +WN  I 
Sbjct: 222 RKVHAMVVRTGY-----DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFIS 276

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG--EQTHSVAIRNGF 174
           G     +   A+EL  +M  SG+ P+  T   +LKA +           Q H   I+   
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACA 336

Query: 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
           +S  ++  +LV MYA +G + DA KVFE +  +DL+ WN++I+G +  G   E+L+LF  
Sbjct: 337 DSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCR 396

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M  EG + +  T+ ++  + A L A++   + H    K+G   + +V N L+D Y KC  
Sbjct: 397 MRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC 456

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A +VF E    N +++++++  L+    G++A++LF EM   G  P       +L A
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+     ++G      +  +   M  +     +V    + G ++ A        +P   V
Sbjct: 517 CASLSAYEQGKQVHAHLI-KRKFMTDVFAGNALVYTYAKCGSIEDADLAFSG--LPDKGV 573

Query: 415 I-WRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
           + W  ++G    HGH   A+    R    ++ P H
Sbjct: 574 VSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNH 608



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           +G   H+  +++G   L   +N L+  Y+       A +VF+   +   V+W+S++  ++
Sbjct: 22  LGAHIHAHLLKSGL--LHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYS 79

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           +N  P EAL  FR M + GV  + + +  +     + G   LG + H      GLS ++ 
Sbjct: 80  NNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIF 136

Query: 281 VNNALLDFYSKCGIIIAAQRVFRE-MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           V NAL+  Y   G +  A+RVF E  R RNAVSW+ ++     N    +A+ELF EM   
Sbjct: 137 VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWS 196

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P E  F  V+ AC+    ++ G      M    G    +     +VD+  + G +  
Sbjct: 197 GVRPNEFGFSCVVNACTGSRDLEAG-RKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHM 255

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           A   +   +   + V W   +  C +HGH    + A   LLQ++
Sbjct: 256 A-ALVFGKVPKTDVVSWNAFISGCVLHGHD---QHALELLLQMK 295



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 6/173 (3%)

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           L +  A   +L LG   H ++ K GL       N LL FYSKC +  +A+RVF E     
Sbjct: 10  LLTRYAATQSLFLGAHIHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPC 67

Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
            VSWS+LV   + N   +EAL  F+ M   G    E     VL      G+  +      
Sbjct: 68  HVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQ----VH 123

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            +    G+   I     +V + G  G V +A           NAV W  ++ A
Sbjct: 124 AVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 306/520 (58%), Gaps = 2/520 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAISKL 156
           +F  +   N+ +W +MI G  +      A+ L+ +M   G+  KP + TY  ++ A +  
Sbjct: 157 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 216

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + +  G Q H+   + G+    ++  +L+  YA    ++D+ +VF      ++V W +++
Sbjct: 217 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 276

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            G+  N K  +AL +F EM  EGV P+  +  S  ++C  L AL  GR  HT   K+GL 
Sbjct: 277 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 336

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +V V N+L+  Y +CG +     +F+ + K+N VSW++++VG A +G G  AL  F +M
Sbjct: 337 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 396

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                 P E+TF G+L ACSH GM  +G   FK   +      K++H+ CMVD+LGR+G 
Sbjct: 397 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 456

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++A E I+NM +  N+++W  LL ACT+H    +AE A   ++ LEP  S  YVLLSNL
Sbjct: 457 LEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNL 516

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA   RW +V  +RR M +  + K PG S + +     EF  GDRSHP ++ I+  L  +
Sbjct: 517 YASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWL 576

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             KLK  GYVP       D+E+E+KE  LSYHSE++AI F L++T  G+ + V+KNLRVC
Sbjct: 577 GGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVC 636

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIKLI+K+  R+I+VRD +RFHHF DG CSC DYW
Sbjct: 637 GDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 33/216 (15%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            F   S++  +     + +A  VF+ +S  D+  +  +I G+A N + + AL LF EM  
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF--------- 288
           +    D  +  S+   C +   L + R+    + +  +     + N  L F         
Sbjct: 71  K----DVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGL 126

Query: 289 ----------------YSKC--GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
                           Y  C  G +    R+F+EM  RN +SW++++ GL  +G  +EAL
Sbjct: 127 FYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEAL 186

Query: 331 ELFKEMEIGG--FVPGEVTFVGVLYACSHCGMVDEG 364
            LF++M   G    P   T+  V+ AC++   + +G
Sbjct: 187 GLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 336/591 (56%), Gaps = 36/591 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HA  I+ G+  ++P   K LI A       +  A  +F  +   +   W T++    
Sbjct: 28  KKLHAQIIKSGLNHHHP-FPKTLIDAYGKCGL-LKDALKLFDALPQQDHVAWATVLSACN 85

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD--VRMGEQTHSVAIRNGFESL 177
            S  P  A  +   +   G++PD   +  L+KA + L    V++G+Q H+  + + F   
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 178 VFVQNSLVHMYAAF-------------------------------GHVKDACKVFELMSE 206
             V++SLV MYA F                               G   +A ++F     
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPF 205

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRR 265
           ++L AW ++I+G   +G  N+AL LF EM  EGV   D   + S+  ACA      LG++
Sbjct: 206 KNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQ 265

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  V  +G    + ++NAL+D Y+KC  ++AA+ +F EMR+++ VSW++++VG A +G 
Sbjct: 266 VHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGL 325

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
            +EAL L+ +M + G  P EVTFVG++YACSH G+V +G + FK M +++GI P ++H+ 
Sbjct: 326 AEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYT 385

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           C++DL  R+G + +A   I+ M + P+   W  LL AC  HG++ +A      LL L+P+
Sbjct: 386 CLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPE 445

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQ 505
               Y+LLSN+YA    W NV  VR+ M  + VKK PG+S V+LG     F  G+ S P 
Sbjct: 446 DPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPM 505

Query: 506 TEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
            +EI  ++ ++  +++  GYVP T +V  D++++EKE  L +HSE++A+A+ L+   PGT
Sbjct: 506 KDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGT 565

Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            +R+VKNLRVC DCH  +KLIS + SREI VRD  R+HHFKDG CSC D+W
Sbjct: 566 TIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 150/325 (46%), Gaps = 42/325 (12%)

Query: 47  TLLQVCAS--SKH-KL-KQVHAFSIRHGVPLNNPDLGKY-LIYAIVSLSFPMSYAHNIFS 101
           +L++ CA+  S H KL KQ+HA  +    P    D+ K  L+        P  Y   +F 
Sbjct: 114 SLIKACANLGSVHVKLGKQLHARFLLS--PFFEDDVVKSSLVDMYAKFELP-DYGRAVFD 170

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYS----------------------------- 132
            + + +  +W  MI GYA S   L A+EL+                              
Sbjct: 171 SIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYL 230

Query: 133 --KMHVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189
             +M   G+   D      ++ A +  A   +G+Q H V I  G+ES +F+ N+LV MYA
Sbjct: 231 FVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYA 290

Query: 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
               V  A  +F  M  +D+V+W S+I G A +G   EALTL+ +M   GV+P+  T V 
Sbjct: 291 KCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVG 350

Query: 250 LFSACAELGALALGRRA-HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-K 307
           L  AC+ +G ++ GR    + V   G+  ++     LLD +S+ G +  A+ + R M  K
Sbjct: 351 LIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVK 410

Query: 308 RNAVSWSTLVVGLAVNGFGKEALEL 332
            +  +W+ L+     +G  K A+ +
Sbjct: 411 PDEPTWAALLSACKHHGNTKMAVRI 435



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 113/217 (52%), Gaps = 8/217 (3%)

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           + ++ H+  I++G         +L+  Y   G +KDA K+F+ + ++D VAW +V++   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA--LALGRRAHT-YVWKVGLSD 277
            +  P++A ++   +  EG++PD +   SL  ACA LG+  + LG++ H  ++      D
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +V V ++L+D Y+K  +    + VF  + + +++SW+ ++ G A +G   EALELF+E  
Sbjct: 146 DV-VKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESP 204

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
                       G++ +    G  ++    F  M+ E
Sbjct: 205 FKNLYAWTALISGLVQS----GNANDALYLFVEMRRE 237


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/636 (34%), Positives = 343/636 (53%), Gaps = 71/636 (11%)

Query: 46   ITLLQVCA--SSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
            + +LQ C    + +  KQ+H +  R G    V L NP +  Y      S +  +  A  +
Sbjct: 779  VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY------SKNGKLELARRV 832

Query: 100  FSHVQDPNIFTWNTMIRGYA---------------ESA---------NPLLA-------- 127
            F  +++ N  +WN+MI  YA               ES+         N LL+        
Sbjct: 833  FDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 892

Query: 128  ---VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSL 184
               + +  +M   G KP++ +   +L+AIS+L  + MG++TH   +RNGF+  V+V  SL
Sbjct: 893  EEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 952

Query: 185  VHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD- 243
            + MY     +  A  VF+ M  R++ AWNS+++G++  G   +AL L  +M  EG++PD 
Sbjct: 953  IDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 1012

Query: 244  --------GYTM---------------VSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
                    GY M                 L  ACA L  L  G+  H    + G  ++V 
Sbjct: 1013 VTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 1072

Query: 281  VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            V  AL+D YSK   +  A +VFR ++ +   SW+ +++G A+ G GKEA+ +F EM+  G
Sbjct: 1073 VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 1132

Query: 341  FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
              P  +TF  +L AC + G++ EG+ YF  M  +Y I+P++EH+ CMVDLLGRAG + +A
Sbjct: 1133 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 1192

Query: 401  YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            ++ I  M + P+A IW  LLG+C IH +   AE A   L +LEP +S +Y+L+ NLY+  
Sbjct: 1193 WDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIF 1252

Query: 461  QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
             RW ++  +R  M    V+     S +++  RV  F   ++ HP   +I+  L ++  ++
Sbjct: 1253 NRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 1312

Query: 521  KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
            K  GYVP    V+ +++E EK+  L  H+EK+AI + L+    G P+RV+KN R+C+DCH
Sbjct: 1313 KKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCH 1372

Query: 581  LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             A K IS V +RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1373 SAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 202/462 (43%), Gaps = 100/462 (21%)

Query: 61   QVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
            ++H   I+ G      DL  YL  A+++     + +  A+ +F  + +P    WN  I  
Sbjct: 695  EIHGCLIKRGF-----DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIIL 749

Query: 118  YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
              +S      VEL+ KM  S +K +T T   +L+A  K+  +   +Q H    R G +S 
Sbjct: 750  NLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSD 809

Query: 178  VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            V + N L+ MY+  G ++ A +VF+ M  R+  +WNS+I+ +A+ G  N+A +LF E+ S
Sbjct: 810  VSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELES 869

Query: 238  -----------------------------------EGVEPDGYTMVSLFSACAELGALAL 262
                                               EG +P+  +M S+  A +ELG L +
Sbjct: 870  SDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNM 929

Query: 263  GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
            G+  H YV + G   +V V  +L+D Y K   + +AQ VF  M+ RN  +W++LV G + 
Sbjct: 930  GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSF 989

Query: 323  NGFGKEALELFKEMEIGGFVPGEVTFVG------------------------VLYACS-- 356
             G  ++AL L  +ME  G  P  VT+ G                        +L AC+  
Sbjct: 990  KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASL 1049

Query: 357  ---------HCGMVDEGF--------------SYFKRMKDEYGIMPKIEH-----FGCMV 388
                     HC  +  GF              S    +K+ + +  +I++     + CM+
Sbjct: 1050 SLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 1109

Query: 389  DLLGRAGLVKQA---YEYIQNMLMPPNAVIWRTLLGACTIHG 427
                  GL K+A   +  +Q + + P+A+ +  LL AC   G
Sbjct: 1110 MGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 1151



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 165/331 (49%), Gaps = 6/331 (1%)

Query: 75  NPDLG-KYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPL-LAVELY 131
           NPD   K LI +   L F   ++  +  +V  P N   WN+ +  +  SA  L + +E++
Sbjct: 605 NPDAAAKNLISSY--LGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVF 662

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            ++H  G+  D+  Y   LK  +++ D+ +G + H   I+ GF+  V+++ +L++ Y   
Sbjct: 663 KELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRC 722

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
             ++ A +VF  M   + + WN  I     + K  + + LFR+M    ++ +  T+V + 
Sbjct: 723 WGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVL 782

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
            AC ++GAL   ++ H YV++ GL  +V++ N L+  YSK G +  A+RVF  M  RN  
Sbjct: 783 QACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTS 842

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW++++   A  GF  +A  LF E+E     P  VT+  +L      G  +E  +  +RM
Sbjct: 843 SWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRM 902

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           + E G  P       ++  +   G +    E
Sbjct: 903 QGE-GFKPNSSSMTSVLQAISELGFLNMGKE 932


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/529 (40%), Positives = 315/529 (59%), Gaps = 17/529 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +   N+ +W TMI GY ++    +A +L+  M      P+ +   +    
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM------PEKNEVSWTAML 240

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +      R+ E +        F+++    V   N+++  +   G V  A +VF+ + E+D
Sbjct: 241 MGYTQGGRIEEASEL------FDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKD 294

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+++I  +   G   EAL LF  M  EGV+ +  +++S+ S CA L +L  GR+ H 
Sbjct: 295 DGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHA 354

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            + K     +V V + L+  Y KCG ++ A+++F     ++ V W++++ G A +G  +E
Sbjct: 355 ELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEE 414

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL++F EM   G     VTFVGVL ACS+ G V EG   F+ MK +Y + PK EH+ CMV
Sbjct: 415 ALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMV 474

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAGLV  A + IQ M +  +A+IW  LLGAC  H +  +AE+A   LLQLEPK++G
Sbjct: 475 DLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAG 534

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG-DRSHPQTE 507
            Y+LLSN+YA + RW +V E+RR M  ++V K+PG S +E+  RV  F  G    HP+  
Sbjct: 535 PYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELS 594

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
            I  ML ++   L+  GY P +  V  D++EEEK  +L +HSE++A+AF L+    G P+
Sbjct: 595 SIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPI 654

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV+KNLRVC DCH AIKLI+K+  REI++RD +RFHHFKDG CSCRDYW
Sbjct: 655 RVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 61/281 (21%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D  I +WN+M+ GY ++  P  A  L+ KM      P+ +T  +       
Sbjct: 35  ARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PERNTVSW------- 81

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N L+  Y     V +A K F+ M ER++V+W ++
Sbjct: 82  --------------------------NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAM 115

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+   G  +EA TLF +M  + V           S    LG L   RR        GL
Sbjct: 116 VRGYVQEGLVSEAETLFWQMPEKNV----------VSWTVMLGGLIQVRRIDE---ARGL 162

Query: 276 SD-----NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            D     +V     ++  Y + G +  A+ +F EM +RN +SW+T++ G   NG    A 
Sbjct: 163 FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVAR 222

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +LF+ M        EV++  +L   +  G ++E    F  M
Sbjct: 223 KLFEVMP----EKNEVSWTAMLMGYTQGGRIEEASELFDAM 259



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 154/340 (45%), Gaps = 28/340 (8%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A   F  + + N+ +W  M+RGY +      A  L+ +M      P+ +   + +  
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM------PEKNVVSWTV-M 146

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +  L  VR  ++      R  F+ +    V  + +++  Y   G + +A ++F+ M  R+
Sbjct: 147 LGGLIQVRRIDEA-----RGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRN 201

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +++W ++I+G+  NG+ + A  LF  M     E +  +  ++     + G +       +
Sbjct: 202 VISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRI----EEAS 253

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            ++       V   NA++  + + G +  A++VF ++R+++  +WS ++      GF  E
Sbjct: 254 ELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVE 313

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKIEHFGCM 387
           AL LF  M+  G      + + VL  C+    +D G   + + +K ++     +     +
Sbjct: 314 ALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD--SDVFVASVL 371

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           + +  + G + +A + I +   P + V+W +++     HG
Sbjct: 372 ITMYVKCGDLVKARQ-IFDRFSPKDIVMWNSIITGYAQHG 410



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 55/260 (21%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S+    NS +  YA  G ++ A +VF+ M ++ +V+WNS++ G+  N +P EA  LF +M
Sbjct: 14  SVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM 73

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
                                          +T  W           N L+  Y K  ++
Sbjct: 74  PER----------------------------NTVSW-----------NGLISGYVKNRMV 94

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A++ F  M +RN VSW+ +V G    G   EA  LF +M     V   V   G++   
Sbjct: 95  SEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLI--- 151

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
                +DE    F        IMP   +     M+    + G + +A E      MP   
Sbjct: 152 -QVRRIDEARGLFD-------IMPVKDVVARTNMISGYCQEGRLAEARELFDE--MPRRN 201

Query: 414 VI-WRTLLGACTIHGHSAIA 432
           VI W T++     +G   +A
Sbjct: 202 VISWTTMISGYVQNGQVDVA 221


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 309/559 (55%), Gaps = 35/559 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A      + +  +  WN MI GY      L A+E++ KM++ GI+ D  TY  +L A
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300

Query: 153 ISKLADVRMGEQTH--------------SVAIRNGFESL------------VFVQ----- 181
            +       G+Q H              S+++ N   +L            VF Q     
Sbjct: 301 CANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKD 360

Query: 182 ----NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
               N+++  Y   G + +A   FE M ER+L+ W  +I+G A NG   E+L LF  M S
Sbjct: 361 LVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EG EP  Y       ACA L AL  GR+ H  + ++G   +++  NAL+  Y+KCG++ A
Sbjct: 421 EGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEA 480

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A  +F  M   ++VSW+ ++  L  +G G +ALELF+ M     +P  +TF+ VL  CSH
Sbjct: 481 AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 540

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V+EG  YFK M   YGI P  +H+  M+DLL RAG   +A + I+ M + P   IW 
Sbjct: 541 AGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWE 600

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LL  C IHG+  +   A   L +L P+H G YVLLSN+YA   RW +V +VR+ M  + 
Sbjct: 601 ALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKG 660

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           VKK PG S +E+ N+V  F + D  HP+ + ++  L E+  K++  GY+P T+ V  D+E
Sbjct: 661 VKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDME 720

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
            E+KE  LS HSEK+A+ F L+    G  VRV KNLR+C DCH A K +SKV  REIVVR
Sbjct: 721 SEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVR 780

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D  RFHHFK+G CSC +YW
Sbjct: 781 DGKRFHHFKNGECSCGNYW 799



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 184/399 (46%), Gaps = 80/399 (20%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA-DVRMGEQTHSVA 169
           +N MI GY+ + +   A+EL+  +  +G +PD  T+  +L A++ +  D +  +Q H   
Sbjct: 117 YNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAV 176

Query: 170 IRNGFESLVFVQNSLVHMYAAFGH---------VKDACKVFELMSERD------------ 208
           +++G   +  V N+L+ ++              +  A K+F+ M+ERD            
Sbjct: 177 VKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYV 236

Query: 209 -------------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
                              +VAWN++I+G+  +G   EAL +FR+M   G++ D +T  S
Sbjct: 237 RNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTS 296

Query: 250 LFSACAELGALALGRRAHTYVWKV----GLSDNVNVNNALLDFYSKCGIIIAAQRV---- 301
           + SACA  G    G++ H Y+ +      L  +++VNNAL   Y KCG +  A++V    
Sbjct: 297 VLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQM 356

Query: 302 ---------------------------FREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
                                      F EM +RN ++W+ ++ GLA NGFG+E+L+LF 
Sbjct: 357 PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  GF P +  F G + AC+    +  G     ++    G    +     ++ +  + 
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLV-RLGFDSSLSAGNALITMYAKC 475

Query: 395 GLVKQAYEYIQNMLMP-PNAVIWRTLLGACTIHGHSAIA 432
           G+V+ A+     + MP  ++V W  ++ A   HGH A A
Sbjct: 476 GVVEAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQA 512



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 74/357 (20%)

Query: 123 NPL---LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL-- 177
           NP+   +A  +++ M  SG KP  +    L+    K +D+        V+  + F+ +  
Sbjct: 27  NPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDL--------VSAHHLFDEIRQ 78

Query: 178 --VFVQNSLVHMYAAFGHVKDACKVF--ELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
             +  + +L+  +++ G+   A ++F    +  RD V +N++I G++ N     A+ LFR
Sbjct: 79  PDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFR 138

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALAL-------GRRAHTYVWKVGLSDNVNVNNALL 286
           ++   G  PD +T  S+      LGALAL        ++ H  V K G     +V NALL
Sbjct: 139 DLLRNGFRPDNFTFTSV------LGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALL 192

Query: 287 DFYSKCG---------IIIAAQRVFREMRKRNAVSWSTLVVGLAVN-------------- 323
             + KC          ++ AA+++F EM +R+ +SW+T++ G   N              
Sbjct: 193 SVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 324 -----------------GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG-- 364
                            GF  EALE+F++M + G    E T+  VL AC++ G    G  
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 365 -FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
             +Y  R +    +   +     +  L  + G V +A + + N +   + V W  +L
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQ-VFNQMPVKDLVSWNAIL 368


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 306/520 (58%), Gaps = 2/520 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI--KPDTHTYPFLLKAISKL 156
           +F  +   N+ +W +MI G  +      A+ L+ +M   G+  KP + TY  ++ A +  
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + +  G Q H+   + G+    ++  +L+  YA    ++D+ +VF      ++V W +++
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
            G+  N K  +AL +F EM  EGV P+  +  S  ++C  L AL  GR  HT   K+GL 
Sbjct: 261 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 320

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            +V V N+L+  Y +CG +     +F+ + K+N VSW++++VG A +G G  AL  F +M
Sbjct: 321 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 380

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
                 P E+TF G+L ACSH GM  +G   FK   +      K++H+ CMVD+LGR+G 
Sbjct: 381 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 440

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           +++A E I+NM +  N+++W  LL ACT+H    +AE A   ++ LEP  S  YVLLSNL
Sbjct: 441 LEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNL 500

Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
           YA   RW +V  +RR M +  + K PG S + +     EF  GDRSHP ++ I+  L  +
Sbjct: 501 YASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWL 560

Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
             KLK  GYVP       D+E+E+KE  LSYHSE++AI F L++T  G+ + V+KNLRVC
Sbjct: 561 GGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVC 620

Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            DCH AIKLI+K+  R+I+VRD +RFHHF DG CSC DYW
Sbjct: 621 GDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           + +A  VF+ +S  D+  +  +I G+A N + + AL LF EM  +    D  +  S+   
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK----DVVSWNSMIKG 66

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF------------------------- 288
           C +   L + R+    + +  +     + N  L F                         
Sbjct: 67  CFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 126

Query: 289 YSKC--GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG--FVPG 344
           Y  C  G +    R+F+EM  RN +SW++++ GL  +G  +EAL LF++M   G    P 
Sbjct: 127 YGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPT 186

Query: 345 EVTFVGVLYACSHCGMVDEG 364
             T+  V+ AC++   + +G
Sbjct: 187 SSTYCCVITACANASALYQG 206


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 333/578 (57%), Gaps = 34/578 (5%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I++L  CA+S      K VH+ +I+      +  +N  L  Y      S    +  A  +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMY------SKCGDLDGALRV 308

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + N+ +W +MI GY        A++L  +M   G+K D      +L A ++   +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H     N  ES +FV N+L+ MYA  G ++ A  VF  M  +D+++WN++I   
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE- 427

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                               ++PD  TM  +  ACA L AL  G+  H Y+ + G S + 
Sbjct: 428 --------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V NAL+D Y KCG++  A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EV+F+ +LYACSH G++++G+ +F  MK+++ I PK+EH+ CMVDLL R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AYE+I+ + + P+A IW  LL  C  +    +AE     + +LEP++SG YVLL+N+YA 
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAE 647

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR-SHPQTEEIHAMLAEITK 518
            ++W  V+ +R  + K+ ++K PG S +E+  +V  F  G+  SHP ++ I ++L ++ +
Sbjct: 648 AEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRR 707

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EG+ P+T+    + +E +KE AL  HSEK+A+AF L+   P   +RV KNLRVC D
Sbjct: 708 KMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK   REIV+RD +RFHHFKDG+CSCR +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 182/382 (47%), Gaps = 46/382 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      + +Y +M   GI  D  T   +L   + 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  HS+AI++ FE  +   N+L+ MY+  G +  A +VFE M ER++V+W S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  +G+ + A+ L ++M  EGV+ D   + S+  ACA  G+L  G+  H Y+    +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N+ V NAL+D Y+KCG + AA  VF  M  ++ +SW+T+                   
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM------------------- 424

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVD 389
             IG   P   T   VL AC+         S  +R K+ +G + +  +         +VD
Sbjct: 425 --IGELKPDSRTMACVLPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           L  + G++  A   + +M+   + V W  ++    +HG+   AIA         +EP   
Sbjct: 476 LYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD-- 532

Query: 448 GDYVLLSNLYA------YEQRW 463
            +   +S LYA       EQ W
Sbjct: 533 -EVSFISILYACSHSGLLEQGW 553



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 196/437 (44%), Gaps = 75/437 (17%)

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
           FS ++G  ++ P L   +   I S   P+  +    +   D  +  +N  I  + +  + 
Sbjct: 24  FSSQNGCFIHKPSLKTKIFSPIFSSCIPIRISATP-TRTIDHQVTDYNAKILHFCQLGDL 82

Query: 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG----------- 173
             A+EL      S +  +T TY  +L+  + L     G++ HS+   N            
Sbjct: 83  ENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKL 140

Query: 174 ----------------FESL----VFVQNSLVHMYAAFGHVKDACKVFELMSE------- 206
                           F+++    V++ N +V  YA  G  K++  +F++M E       
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKR 200

Query: 207 -------------RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                        RD+++WNS+I+G+ SNG     L ++++M   G++ D  T++S+   
Sbjct: 201 PESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA  G L+LG+  H+   K      +N +N LLD YSKCG +  A RVF +M +RN VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
           ++++ G   +G    A++L ++ME  G     V    +L+AC+  G +D G     Y K 
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 371 MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG------- 421
              E  +      F C  ++D+  + G ++ A      M++  + + W T++G       
Sbjct: 381 NNMESNL------FVCNALMDMYAKCGSMEAANSVFSTMVV-KDIISWNTMIGELKPDSR 433

Query: 422 --ACTIHGHSAIAEIAR 436
             AC +   ++++ + R
Sbjct: 434 TMACVLPACASLSALER 450


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/637 (35%), Positives = 343/637 (53%), Gaps = 73/637 (11%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSH 102
           LL+ C  SK   + K++H   ++     N  +    +++ +  L    +    A  +F  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLK-----NTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           + +P++  WN +IR YA +     A++LY  M   G++P+ +TYPF+LKA S L  +  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 163 EQTHSVAIRNG---------------------------FESL----VFVQNSLVHMYAAF 191
            + HS A   G                           F S+    V   N+++   + +
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 192 GHVKDAC--------------------------------KVFELMSERDLVAWNSVINGF 219
           G   DA                                 K+F++M  R+ V+W+++I G+
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGY 248

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
            ++    EAL +FR M   G++PD  TM+ +  AC+ L AL  G  +H Y+   G + + 
Sbjct: 249 VASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 308

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            + NAL+D YSKCG I  A+ VF  M + + VSW+ +++G  ++G G EAL LF ++   
Sbjct: 309 LICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 368

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P ++TF+ +L +CSH G+V EG  +F  M  ++ I+P++EH  CMVD+LGRAGL+ +
Sbjct: 369 GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDE 428

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A+ +I+NM   P+  IW  LL AC IH +  + E     +  L P+ +G++VLLSN+Y+ 
Sbjct: 429 AHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSA 488

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
             RW +   +R T     +KK PG S +E+   V  F  GD+SH Q  +I+  L E+  +
Sbjct: 489 AGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVE 548

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GY      VF D+EEEEKE  L YHSEK+AIAF ++N   G P+ V KNLRVC DC
Sbjct: 549 MKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDC 608

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H AIK ++ +  REI VRD +RFHHFK+G C+C D+W
Sbjct: 609 HTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           + Y  LL+A  +   +   ++ H   ++N   +   V + L  +Y +   V  A ++F+ 
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           +    ++ WN +I  +A NG  + A+ L+  M   GV P+ YT   +  AC+ L A+  G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
              H++    GL  +V V  AL+DFY+KCGI++ AQR+F  M  R+ V+W+ ++ G ++ 
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G   +A++L  +M+  G  P   T VGVL  C       +   Y +++ D  G+  ++  
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC-------QCLLYARKIFDVMGVRNEVS- 240

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMP---PNAVIWRTLLGACT----------IHGHSA 430
           +  M+     +  +K+A +  + M +    P+      +L AC+           HG+  
Sbjct: 241 WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 300

Query: 431 IAEIARSTLL 440
           +   A  TL+
Sbjct: 301 VRGFATDTLI 310


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 332/578 (57%), Gaps = 34/578 (5%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I++L  CA+S      K VH+ +I+      +  +N  L  Y      S    +  A  +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMY------SKCGDLDGALRV 308

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + N+ +W +MI GY        A+ L  +M   G+K D      +L A ++   +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSL 368

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H     N  ES +FV N+L+ MY   G +  A  VF  M  +D+++WN++I   
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE- 427

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                               ++PD  TM  +  ACA L AL  G+  H Y+ + G S + 
Sbjct: 428 --------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V NAL+D Y KCG++  A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDA 527

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EV+F+ +LYACSH G++++G+ +F  MK+++ I PK+EH+ CMVDLL R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AYE+I+ + + P+A IW  LL  C I+    +AE     + +LEP+++G YVLL+N+YA 
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR-SHPQTEEIHAMLAEITK 518
            ++W  V+ +R  + K+ ++K PG S +E+  +V  F  G+  SHP +++I ++L ++ +
Sbjct: 648 AEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRR 707

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EGY P+T+    + +E +KE AL  HSEK+A+AF L+   P   VRV KNLRVC D
Sbjct: 708 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGD 767

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK   REIV+RD +RFHHFK+G+CSCR +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 46/382 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      +E+Y +M   GI  D  T   +L   + 
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  HS+AI++ FE  +   N+L+ MY+  G +  A +VFE M ER++V+W S+
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  +G+ + A+ L ++M  EGV+ D     S+  ACA  G+L  G+  H Y+    +
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N+ V NAL+D Y+KCG +  A  VF  M  ++ +SW+T+                   
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM------------------- 424

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVD 389
             IG   P   T   +L AC+         S  +R K+ +G + +  +         +VD
Sbjct: 425 --IGELKPDSRTMACILPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           L  + G++  A   + +M+   + V W  ++    +HG+   AIA         +EP   
Sbjct: 476 LYVKCGVLGLA-RLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPD-- 532

Query: 448 GDYVLLSNLYA------YEQRW 463
            +   +S LYA       EQ W
Sbjct: 533 -EVSFISILYACSHSGLLEQGW 553



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 180/409 (44%), Gaps = 81/409 (19%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFS 101
           ++LQ+CA SK     K+VH+      +  NN  + + L   +VSL      +     +F 
Sbjct: 104 SVLQLCAGSKSLTDGKKVHSI-----IKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
            ++  N++ WN M+  YA                                   K+ D + 
Sbjct: 159 TMEKKNVYLWNFMVSEYA-----------------------------------KIGDFKE 183

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
                 + +  G E                   + A ++F+ + +RD+++WNS+I+G+ S
Sbjct: 184 SICLFKIMVEKGIEG---------------KRPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG     L ++++M   G++ D  T++S+   CA  G L+LG+  H+   K      +N 
Sbjct: 229 NGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINF 288

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           +N LLD YSKCG +  A RVF +M +RN VSW++++ G   +G    A+ L ++ME  G 
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGV 348

Query: 342 VPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHFGC--MVDLLGRAGL 396
               V    +L+AC+  G +D G     Y K    E  +      F C  ++D+  + G 
Sbjct: 349 KLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNL------FVCNALMDMYTKCGS 402

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLG---------ACTIHGHSAIAEIAR 436
           +  A      M++  + + W T++G         AC +   ++++ + R
Sbjct: 403 MDGANSVFSTMVV-KDIISWNTMIGELKPDSRTMACILPACASLSALER 450



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 102/279 (36%), Gaps = 63/279 (22%)

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           +R +  +N+ I  F   G    A+ L        +E   Y+  S+   CA   +L  G++
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKK 120

Query: 266 AHTYVWKVGLSDNVNVNNAL----LDFYSKCGIIIAAQRVFREMRKRN------------ 309
            H+ +     S+NV V+  L    +  Y+ CG +   +RVF  M K+N            
Sbjct: 121 VHSII----KSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176

Query: 310 ---------------------------------------AVSWSTLVVGLAVNGFGKEAL 330
                                                   +SW++++ G   NG  +  L
Sbjct: 177 KIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGL 236

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           E++K+M   G      T + VL  C++ G +  G +    +  +     +I     ++D+
Sbjct: 237 EIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSTFERRINFSNTLLDM 295

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             + G +  A    + M    N V W +++   T  G S
Sbjct: 296 YSKCGDLDGALRVFEKM-GERNVVSWTSMIAGYTRDGRS 333



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 43  RKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAH 97
           R    +L  CAS  +  + K++H + +R+G   +     +++  A+V L      +  A 
Sbjct: 433 RTMACILPACASLSALERGKEIHGYILRNGYSSD-----RHVANALVDLYVKCGVLGLAR 487

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
            +F  +   ++ +W  MI GY        A+  +++M  +GI+PD  ++  +L A S
Sbjct: 488 LLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 313/528 (59%), Gaps = 16/528 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M+ A  +F      ++FTW  ++ GYA++     A  ++  M      PD +   +    
Sbjct: 309 MAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKNAVSWN-AM 361

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           ++     RM E+   +     F+++    V   N+++  YA  G + +A  +F +M ++D
Sbjct: 362 MAAYVQRRMMEEAKEL-----FDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            V+W +++  ++  G   E L LF+EM   G   +      + S CA++ AL  G + H+
Sbjct: 417 AVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHS 476

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            + K G      V NALL  Y KCG +  A   F EM +R+ VSW+T++ G A +GFGKE
Sbjct: 477 RLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKE 536

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           ALE+F  M      P ++T VGVL ACSH G+V++G SYF  M  ++G+  K EH+ CM+
Sbjct: 537 ALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMI 596

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRAG + +A   +++M   P++ +W  LLGA  IH +S +   A   + +LEP+++G
Sbjct: 597 DLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAG 656

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
            YVLLSN+YA   +W +V ++R  M +  VKK PG S +E+ N+V  F +GD  HP+ E+
Sbjct: 657 MYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPERED 716

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I+A L ++  ++K  GYV  T+ V  D+EEEEKE  L YHSEK+A+A+ ++   PG P+R
Sbjct: 717 IYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIR 776

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V+KNLRVC DCH A K IS +  R I++RD +RFHHF+DG CSC DYW
Sbjct: 777 VIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 175/425 (41%), Gaps = 111/425 (26%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-- 153
           A  +F+ +   +  T+NTM+ GYA +     A+  +  +     +PD+ +Y  LL A+  
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTLLHALGV 181

Query: 154 -SKLADVR-----------------------------------MGEQTHSVA-------- 169
            S LADVR                                   +  +  +V+        
Sbjct: 182 SSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY 241

Query: 170 IRNG--------FESLV----FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
           +RNG        F+S         N+L+  Y     +++A K+F  M +RD+V+WN++++
Sbjct: 242 VRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVS 301

Query: 218 GFASNGKPNEALTLFREMASEGVEP--DGYTMVSLFSACAELGALALGRRAH-------- 267
           G+A  G   EA  LF       V P  D +T  ++ S  A+ G L   +R          
Sbjct: 302 GYARRGDMAEARRLF------DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA 355

Query: 268 --------TYVWKVGLSD-----------NVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
                    YV +  + +           NV   N +L  Y++ G++  A+ +F  M ++
Sbjct: 356 VSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQK 415

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           +AVSW+ ++   +  GF +E L+LFKEM   G       F  VL  C+    ++ G    
Sbjct: 416 DAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 475

Query: 369 KRM-KDEYGIMPKIEHFGCMVD--LLG---RAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
            R+ K  YG+       GC V   LL    + G +++A+   + M    + V W T++  
Sbjct: 476 SRLIKAGYGV-------GCFVGNALLAMYFKCGSMEEAHSAFEEM-EERDVVSWNTMIAG 527

Query: 423 CTIHG 427
              HG
Sbjct: 528 YARHG 532



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V  +N  +  +   G V DA ++F  M  R    +N+++ G+A+NG+  +AL+ FR +  
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP- 165

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
               PD ++  +L  A     +LA  R       ++ + D+V+  N ++  ++  G++  
Sbjct: 166 ---RPDSFSYNTLLHALGVSSSLADVRALFD---EMPVKDSVSY-NVMISSHANHGLVSL 218

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           A+  F    +++AVSW+ ++     NG  +EA ELF
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF 254



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           N  +  + + G +  A+R+F  M +R+  +++T++ G A NG   +AL  F+ +      
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----R 166

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P   ++  +L+A      V    +  + + DE  +   +  +  M+      GLV  A  
Sbjct: 167 PDSFSYNTLLHALG----VSSSLADVRALFDEMPVKDSVS-YNVMISSHANHGLVSLARH 221

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
           Y  ++    +AV W  +L A   +G
Sbjct: 222 YF-DLAPEKDAVSWNGMLAAYVRNG 245


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/548 (38%), Positives = 318/548 (58%), Gaps = 36/548 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  + + ++F+WN M+ GY  + +   A  L+ +M     + D  ++  +L   ++
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMP----ERDIVSWNAMLSGYAQ 69

Query: 156 LADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL----------- 203
              V    +  + + ++NG        N L+  Y   G ++DA ++FE            
Sbjct: 70  NGFVDEAREIFYKMPLKNGIS-----WNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNC 124

Query: 204 ---------------MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
                          M +RD ++W+++I G++ NG   EAL  F EM  +    +  +  
Sbjct: 125 LMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFT 184

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
              S C+ + AL LGR+ H  + K G      V NALL  Y KCG I  A+  F+E+ ++
Sbjct: 185 CALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEK 244

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW+T++ G A +GFG+EAL +F+ M+  G  P + T V VL ACSH G+VD+G  YF
Sbjct: 245 DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYF 304

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
             M  +YGI  K+ H+ CMVDLLGRAG +++A   ++NM   P+A  W  LLGA  IHG+
Sbjct: 305 YSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGN 364

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
           + + E A   + ++EP +SG Y+LLS LYA   RW +  ++R  M  + VKK PG+S +E
Sbjct: 365 TELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLE 424

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           + N++  F +GD SHP T++I+  L E+  KLK EGY+  T  VF D+EEEEK   L YH
Sbjct: 425 VQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYH 484

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SEK+A+A+ ++    G P+RV+KNLRVC DCH AIK ISK+  R I++RD  RFH+F+ G
Sbjct: 485 SEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGG 544

Query: 609 HCSCRDYW 616
            CSCRD+W
Sbjct: 545 SCSCRDFW 552


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/546 (38%), Positives = 326/546 (59%), Gaps = 1/546 (0%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           +P  N  +   +I  ++   F +  A  +F ++ + +  +W T+I G  ++     AV+ 
Sbjct: 199 IPEKNIVVYNTMITGLLRCRFIVE-AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           + +M + G   D  T+  +L A      +  G+Q H+  IR  ++  +FV ++L+ MY  
Sbjct: 258 FKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK 317

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
             +VK A  VF  M  +++++W +++ G+  NG   EA+ +F +M    + PD +T+ S+
Sbjct: 318 CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            S+CA L +L  G + H      GL   V V+NAL+  Y KCG +  A ++F EM+ R+ 
Sbjct: 378 ISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDE 437

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW+ LV G A  G   E + LF+ M   G VP  VTFVGVL ACS  G+V++G+ YF+ 
Sbjct: 438 VSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFEC 497

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M  E+ I P  +H+ CM+DLL RAG +++A  +I  M   P+A+ W TLL +C ++G+  
Sbjct: 498 MVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLE 557

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           I + A  +L +LEP++   Y+LLS++YA + +W +V ++R+ M +  VKK PGHS ++  
Sbjct: 558 IGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYK 617

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
           N+V  F   DRS P +++I+A L  +  K+  EGYVP    V  D+E+ EK   L++HSE
Sbjct: 618 NKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSE 677

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+AIAF L+    G  +RVVKNLRVC DCH A K IS++  REI+VRD  RFH FKDG C
Sbjct: 678 KLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVC 737

Query: 611 SCRDYW 616
           SC D+W
Sbjct: 738 SCGDFW 743



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 211/456 (46%), Gaps = 76/456 (16%)

Query: 32  ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY--LIYAIVSL 89
           +S  N  T+ ++ C       A ++ ++K++H   IR    L NP+   Y  LI     L
Sbjct: 2   SSSSNYYTAALKFCCE-----ARNRAQVKKLHCRIIR---TLTNPETFLYNNLINTYGKL 53

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE--------------------SANPLL--- 126
              +  A N+F H+  PN+F+WNT++  Y++                    S N LL   
Sbjct: 54  G-DLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGY 112

Query: 127 --------AVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
                   +V +Y+ M   G +  +  T+  +L   S    V +G Q H    + G++S 
Sbjct: 113 AGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSY 172

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFEL-------------------------------MSE 206
           +FV + LV MYA  G + DA ++FE                                M E
Sbjct: 173 LFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE 232

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           +D ++W ++I G   NG   EA+  F+EM  EG   D +T  S+ +AC    AL  G++ 
Sbjct: 233 KDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI 292

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H Y+ +    DN+ V +ALLD Y KC  +  A+ VFR+MR +N +SW+ ++VG   NG+ 
Sbjct: 293 HAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYS 352

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA+ +F +M+     P + T   V+ +C++   ++EG + F       G++  +     
Sbjct: 353 EEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG-AQFHGQALASGLICFVTVSNA 411

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           ++ L G+ G ++ A++    M +  + V W  L+  
Sbjct: 412 LITLYGKCGSLEHAHQLFHEMKI-RDEVSWTALVSG 446



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 53/374 (14%)

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL-- 177
           E+ N     +L+ ++  +   P+T  Y  L+    KL D++          RN F+ +  
Sbjct: 17  EARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNA--------RNVFDHIPQ 68

Query: 178 --VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
             +F  N+L+  Y+  G+++D  +VF+ M   D+V+WNS+++G+A NG  +E++ ++  M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 236 ASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
             +G V  +  T  ++    +  G + LGR+ H  ++K G    + V + L+D Y+K G 
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 295 IIAAQRVFREMRKRN-------------------------------AVSWSTLVVGLAVN 323
           I  A R+F E+ ++N                               ++SW+T++ GL  N
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPK 380
           G  KEA++ FKEM I GF   + TF  VL AC     +DEG    +Y  R   +  I   
Sbjct: 249 GLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVG 308

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
                 ++D+  +   VK A E +   +   N + W  +L     +G+S  A +     +
Sbjct: 309 ----SALLDMYCKCRNVKYA-EAVFRKMRHKNVISWTAMLVGYGQNGYSEEA-VRIFCDM 362

Query: 441 QLEPKHSGDYVLLS 454
           Q    H  D+ L S
Sbjct: 363 QRNEIHPDDFTLGS 376



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 13/286 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA+ IR     +N  +G  L+         + YA  +F  ++  N+ +W  M+ GY 
Sbjct: 290 KQIHAYIIRTDYQ-DNIFVGSALLDMYCKCR-NVKYAEAVFRKMRHKNVISWTAMLVGYG 347

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           ++     AV ++  M  + I PD  T   ++ + + LA +  G Q H  A+ +G    V 
Sbjct: 348 QNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVT 407

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+L+ +Y   G ++ A ++F  M  RD V+W ++++G+A  GK NE ++LF  M + G
Sbjct: 408 VSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHG 467

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWK----VGLSDNVNVNNALLDFYSKCGII 295
           + PDG T V + SAC+  G +  G      + K      + D+      ++D  S+ G +
Sbjct: 468 IVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHY---TCMIDLLSRAGRL 524

Query: 296 IAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGKEALELFKEME 337
             A+    +M    +A+ W+TL+    +NG    GK A E   ++E
Sbjct: 525 EEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE 570


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 337/577 (58%), Gaps = 12/577 (2%)

Query: 47  TLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           +++  C    +  +QVHA +++     +   +G  LI            A N++  +   
Sbjct: 170 SVISACGGDDNCGRQVHALALKTSFD-SCVYVGNALIMMYCKSCGGADEAWNVYEAMGFR 228

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQT 165
           N+ +WN+MI G+        A+EL+S+MHV GI+ D  T   +   +  + D +    Q 
Sbjct: 229 NLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQL 288

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFG-HVKDACKVF-ELMSERDLVAWNSVINGFASNG 223
             + I+ GF   + V  +LV  Y++ G  V D  ++F EL   +D+V+W  +I  FA   
Sbjct: 289 QCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAER- 347

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
            P +AL +FR+   E + PD +    +  ACA L          ++V KVG  D++ + N
Sbjct: 348 DPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLAN 407

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+   ++CG +  +++VF +M  R+ VSW++++   A++G GKEAL LF +M+     P
Sbjct: 408 ALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDAQ---P 464

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
              TFV +L ACSH GM +EG   F+ M + +GI+P+++H+ CMVD+LGRAG + +A E 
Sbjct: 465 DGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKEL 524

Query: 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           I  M M P++V+W  LLG+C  HG + +A++A   L +L+P +S  YVL+SN++  + R+
Sbjct: 525 IDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSNIFCTDGRF 584

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
              + +RR M  + V+K PG S +E+GN+V EF  G + HP+ E I A L E+ ++LK  
Sbjct: 585 NEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARLEELVRRLKDL 644

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA----PGTPVRVVKNLRVCADC 579
           GYVP+      DIE+E KE+ L YHSEK+A+AF L+N       G  ++++KN+R+C DC
Sbjct: 645 GYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNVGSICCSGNTIKIMKNIRICVDC 704

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H  +KL S++   EIVVRD +RFHHFK   CSC DYW
Sbjct: 705 HNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW 741



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 197/442 (44%), Gaps = 24/442 (5%)

Query: 23  VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNP--DLGK 80
           +K  Y  TP     P+         L Q CA  +  L +  A   RH + L+NP  D   
Sbjct: 47  LKLFYSITPPP---PLVHSHHTYAALFQACAR-RSSLPEGQALH-RH-MFLHNPNSDFNL 100

Query: 81  YLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           +L   +V++      + YAH +F  + + NI +W  ++ GYA+         ++  M + 
Sbjct: 101 FLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIW 160

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-AFGHVKD 196
             +P    +  ++ A     D   G Q H++A++  F+S V+V N+L+ MY  + G   +
Sbjct: 161 H-QPTEFAFASVISACG--GDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADE 217

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A  V+E M  R+LV+WNS+I GF   G  N AL LF +M   G+  D  T+VS+FS    
Sbjct: 218 AWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCG 277

Query: 257 LG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA-AQRVFREMRKR-NAVSW 313
           +G  L    +      K G    + V  AL+  YS  G  ++   R+F E+  R + VSW
Sbjct: 278 MGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSW 337

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY-FKRMK 372
           + ++   A     K+AL +F++       P    F  VL AC+  G+  E  +   +   
Sbjct: 338 TGIIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVLKACA--GLATERHALTVQSHV 394

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
            + G    I     ++    R G V  + +    M    + V W ++L A  +HG    A
Sbjct: 395 LKVGFEDDIVLANALIHACARCGSVALSKQVFDKM-GSRDTVSWNSMLKAYAMHGQGKEA 453

Query: 433 EIARSTLLQLEPKHSGDYVLLS 454
            +  S  +  +P  +    LLS
Sbjct: 454 LLLFSQ-MDAQPDGATFVALLS 474


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 315/518 (60%), Gaps = 6/518 (1%)

Query: 90  SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149
           S+ +     +F  +   +I +WNT+I G A++     A+ +  +M  + ++PD+ T   +
Sbjct: 143 SYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSV 202

Query: 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           L   ++  ++  G++ H  AIRNG+++ VF+ +SL+ MYA    V D+C+VF ++ + D 
Sbjct: 203 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDG 262

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           ++WNS+I G   NG  +E L  F++M    ++P+  +  S+  ACA L  L LG++ H Y
Sbjct: 263 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 322

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + +     NV + +AL+D Y+KCG I  A+ +F +M   + VSW+ +++G A++G   +A
Sbjct: 323 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 382

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           + LFK ME+ G  P  V F+ VL ACSH G+VDE + YF  M  +Y I+P +EH+  + D
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 442

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGR G +++AYE+I +M + P   +W TLL AC +H +  +AE     L  ++P++ G 
Sbjct: 443 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 502

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+Y+   RW + +++R  M  + +KK P  S +E+ N+V  F  GD+SHP  + I
Sbjct: 503 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 562

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +  L  + ++++ EGYV  T  V  D+EEE+K   L  HSE++AI F +++T  GT +RV
Sbjct: 563 NEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRV 622

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
            KNLRVC DCH A K ISK+  REIV      F+ F D
Sbjct: 623 TKNLRVCVDCHTATKFISKIVGREIV------FYFFLD 654



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 132/339 (38%), Gaps = 79/339 (23%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-- 191
           M  SG  PD + +P +LK+ + + D+R GE  H   IR G    ++  N+L++MY+ F  
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 192 ---GHVKDACKVFELMSERDLVAWNSVINGFASN---GKPNEALTLFREMASE--GVEPD 243
              G V+  C              + ++ G       GK + +  L  E+     G++ +
Sbjct: 61  LEEGGVQRFCD-------------SKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQN 107

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
           G           ++  +      +  V+  G + +V        +Y     + + ++VF 
Sbjct: 108 G--------DLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFE 154

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL----------- 352
            M KR+ VSW+T++ G A NG  ++AL + +EM      P   T   VL           
Sbjct: 155 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLK 214

Query: 353 ------YAC------------------SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
                 YA                   + C  VD+    F  +    GI       GC+ 
Sbjct: 215 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCV- 273

Query: 389 DLLGRAGLVKQAYEYIQNMLMP---PNAVIWRTLLGACT 424
               + G+  +  ++ Q ML+    PN V + +++ AC 
Sbjct: 274 ----QNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA 308


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 333/577 (57%), Gaps = 9/577 (1%)

Query: 47  TLLQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L  CA S    +  Q H F  + G+  ++    K  +  + S  F +  A  +     
Sbjct: 126 TVLSACAHSGRVFEGMQCHGFLFKFGLVFHH--FVKSSLVHMYSKCFHVDLALQVLESEH 183

Query: 105 -----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
                D + F +N+++    ES     AVE+  +M   G+  D+ TY  ++    ++ D+
Sbjct: 184 GNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDL 243

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +G Q H+  ++ G    VFV + LV M+   G V  A KVF+ +  R++V W S++  +
Sbjct: 244 GLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAY 303

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG+  E L L   M  EG   + +T   L +A A + AL  G   H  V K+G+ + V
Sbjct: 304 LQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRV 363

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            V NAL++ YSKCG I ++  VF +MR R+ ++W+ ++ G + +G GK+AL LF++M   
Sbjct: 364 IVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSA 423

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  VTFVGVL AC+H  +V+EGF Y  ++   + + P +EH+ C+V +L RAG++++
Sbjct: 424 GECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEE 483

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A  +++   +  + V WR LL AC IH +  +      T+LQ++P+  G Y LLSN+YA 
Sbjct: 484 AENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAK 543

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            + W +V  +R+ M +  VKK PG S +E+ N V  F     +HP+  +I+  +  + + 
Sbjct: 544 ARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEM 603

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +K  GYVP  E V  D+E+E+KE  L+YHSEK+AIA+ L+      P+RV+KNLR+C DC
Sbjct: 604 IKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDC 663

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H A+KLISKV +R I+VRD SRFHHF+DG C+C D+W
Sbjct: 664 HTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 168/337 (49%), Gaps = 7/337 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ ++N ++ GY  S   L  V+L+  M  S  +P+ + +  +L A + 
Sbjct: 74  ARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAH 133

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-----LMSERDLV 210
              V  G Q H    + G     FV++SLVHMY+   HV  A +V E     + ++ D  
Sbjct: 134 SGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAF 193

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
            +NSV+N    +G+  EA+ +   M  EGV  D  T VS+   C ++  L LG + H  +
Sbjct: 194 CYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQL 253

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            K GL+ +V V + L+D + KCG +++A++VF  ++ RN V W++L+     NG  +E L
Sbjct: 254 LKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETL 313

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            L   M+  G +  E TF  +L A +    +  G     R+ ++ GI  ++     ++++
Sbjct: 314 NLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARV-EKLGIKNRVIVGNALINM 372

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             + G +  +Y+   +M    + + W  ++   + HG
Sbjct: 373 YSKCGCIDSSYDVFFDM-RNRDIITWNAMICGYSQHG 408



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           NSL+++Y     ++ A  +F+ MS R +V++N ++ G+  +G+  E + LF+ M S   +
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P+ Y   ++ SACA  G +  G + H +++K GL  +  V ++L+  YSKC  +  A +V
Sbjct: 119 PNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQV 178

Query: 302 FREM-----RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
                       +A  +++++  L  +G   EA+E+   M   G V   VT+V V+  C 
Sbjct: 179 LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV---KQAYEYIQNMLMPPNA 413
               +  G     ++  + G+   +     +VD+ G+ G V   ++ ++ +QN     N 
Sbjct: 239 QIRDLGLGLQVHAQLL-KGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQN----RNV 293

Query: 414 VIWRTLLGA 422
           V+W +L+ A
Sbjct: 294 VVWTSLMTA 302


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/429 (46%), Positives = 283/429 (65%), Gaps = 12/429 (2%)

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           +F  + + ++  WN++I G  SN   ++A+  +  M SEG  P+ +T   +  ACA L  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 260 LALGRRAHTYVWK---------VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
           L LG + HT V K         +G+  NV V  +L+D Y+KCG +  A+ VF  M +++ 
Sbjct: 128 LQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 187

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIG---GFVPGEVTFVGVLYACSHCGMVDEGFSY 367
           VSW  ++ G A+NG  KEA++LF +M+     G  P   TF+G+L  C+H G+VDEG  Y
Sbjct: 188 VSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 247

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           F  M   + + P IEH+GCMVDLLGRAGL+ +A++ I+NM M  NA++W  LLGAC IH 
Sbjct: 248 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHR 307

Query: 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLV 487
            + +AE+A   L++LEP +SG+YVLLSN+Y+   +W    +VR +M ++R++K PG S +
Sbjct: 308 DTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWI 367

Query: 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSY 547
           E+   V EF +GD+ HP +E+I+A L E+TKK+K+ GYVP T+ V  DIEEEEKE  L  
Sbjct: 368 EVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGC 427

Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
           HSEK+AIAF L++  P   +RVVKNLRVC DCH+AIKLIS +  REI VRD +RFH F++
Sbjct: 428 HSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFRE 487

Query: 608 GHCSCRDYW 616
           G CSC DYW
Sbjct: 488 GSCSCNDYW 496



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 139/254 (54%), Gaps = 17/254 (6%)

Query: 81  YLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS 137
           YL+  I+  SF  S   Y   +F  ++ PNIF WNTMIRG   +     A+E Y  M   
Sbjct: 47  YLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSE 106

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN---------GFESLVFVQNSLVHMY 188
           G  P+  T+PF+LKA ++L D+++G + H++ ++          G    VFV  SLV MY
Sbjct: 107 GFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMY 166

Query: 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE---GVEPDGY 245
           A  G+++ A  VF+ M E+D+V+W ++I G+A NG P EA+ LF +M  E   G++PDG 
Sbjct: 167 AKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGN 226

Query: 246 TMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           T + L   C   G +  GRR    +++   L+ ++     ++D   + G++  A ++ R 
Sbjct: 227 TFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRN 286

Query: 305 M-RKRNAVSWSTLV 317
           M  + NA+ W  L+
Sbjct: 287 MPMEANAIVWGALL 300


>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
 gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
          Length = 550

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 305/505 (60%), Gaps = 15/505 (2%)

Query: 127 AVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SLVFVQNSL 184
           A+ L+  +  +   P  H + P +L A + L+ +  G Q H++A + G   S   V NSL
Sbjct: 46  ALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANSL 105

Query: 185 VHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPD 243
           +H+Y++ G    A  +F  + +R LV+WN+ ++    NG    AL LFREM  +  + PD
Sbjct: 106 LHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPD 165

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKV--------GLSDNVNVNNALLDFYSKCGII 295
            YT+ S+  ACA  GAL+LG  AH  + +          +S ++ +NN+L+D Y KCG +
Sbjct: 166 AYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGAL 225

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYA 354
             AQ+VF  M  R+  SW+ +++ LA +G   E++ELF  M ++    P  +TFV VL A
Sbjct: 226 ELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLSA 285

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           C+H G+V+EG  YF  M D+Y I P+IEH+GCMVDLL RAG +++A + +  M   P+A+
Sbjct: 286 CNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMNCRPDAI 345

Query: 415 IWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
           IWR+LL AC     G      +A+  L   +   SG YVLLS +YA  QRW +V  VRR 
Sbjct: 346 IWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDVGMVRRL 405

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR-TEN 531
           MV+E VKK PG S +E+   V +F  GD SHPQ+E I+  L EI  KL   GY P  +E 
Sbjct: 406 MVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSEA 465

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
                 +  K  AL  HSE++AI+F L+N  PG P+R++KNLRVC DCH   KLISK+Y 
Sbjct: 466 PLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYG 525

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
            EI+VRDR RFHHFKDG CSC+DYW
Sbjct: 526 VEIIVRDRIRFHHFKDGSCSCKDYW 550


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 313/532 (58%), Gaps = 9/532 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESA-----NPLLAVELYSKMHVSGIKPDTHTYP 147
           M+YA +IF+ + DP  F +NT++RGY         +P  A+ L+  M   G++PD++T+P
Sbjct: 83  MAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFP 142

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM--S 205
           F+ KA ++L  ++ G Q     ++ GF+     QNSL+  Y   G    A + FE M   
Sbjct: 143 FVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDD 202

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           E+   +W++++  +   G+  E +  F  M   G  PD  +MVS  SACA LGA  +GR 
Sbjct: 203 EQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRS 262

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  + +     N  ++ +L+D Y+KCG I  A  VF  M  +NA ++S +V GLA++G 
Sbjct: 263 IHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGD 322

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
           G++ALE+F  M   G  P    +VGVL ACS  G+++EG   F RM+ E+ + P  +H+G
Sbjct: 323 GRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYG 382

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
           CMVDL+ RAG +  A   I NM   P    WR+LL AC IHG+  +AE A   L +L   
Sbjct: 383 CMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGAT 442

Query: 446 HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER-VKKTPGHSLVELGNRVFEFFMGDRSHP 504
           ++GDY++LS+++A      +    RRT   +R + + PG+S VE+      F   DRSHP
Sbjct: 443 NAGDYIILSDMHARAHN-RDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHP 501

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           + ++I+ ML ++  +L+ EGY P T  +  D  EEEK   ++ HS+K+A+AF L++T  G
Sbjct: 502 RADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEG 561

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            PVRVV NLR+  +CH    LIS+++ REIVVRDR+RFH FK G CSC +YW
Sbjct: 562 APVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/514 (41%), Positives = 329/514 (64%), Gaps = 4/514 (0%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+ F ++++ R  A    P+ A+  Y  +  + +   + T+  + KA + L+ +R G   
Sbjct: 68  PDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAI 127

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ +I  GF S  FV  +LV +Y+  G +  A K+F+ + +R +VAWN++I+G+  NG  
Sbjct: 128 HAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLA 187

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
              + +++EM +    PD  T V+  SACA+ GAL LGR     V    +  +V + +AL
Sbjct: 188 ERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSAL 247

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           ++ Y++CG++  A+R F  +++RN V+W++++ G  ++G G+EA++LF  M   G  P  
Sbjct: 248 VNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNH 307

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFV VL AC+H G+V EG   F  MK  YG++P++EH+  MVD+ GRAGL+ +A ++I 
Sbjct: 308 VTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFIS 367

Query: 406 NMLMP--PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
           +  MP  P   +W  +LGAC +H +  +       L+ LEP++   +VLLSN+YA   + 
Sbjct: 368 D-YMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKM 426

Query: 464 LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
            +V++VR TM+K R+KK  G SL+ELG     F MG++SHPQT EI+  L E+  ++   
Sbjct: 427 HHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAA 486

Query: 524 GYVPRTENVFADIEEEEKEDALSYHSEKIAIAF-MLVNTAPGTPVRVVKNLRVCADCHLA 582
           GY+P TE+V  ++EEEE+E AL YHSEK+A+A+ ++++    TP+RV+KNLR+C DCHLA
Sbjct: 487 GYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLA 546

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           IK +S V +REIVVRD+ RFHHFKDG CSC +YW
Sbjct: 547 IKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 319/558 (57%), Gaps = 37/558 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +WN MI  Y ++ +   A+ELY K+ + G K    T+  +L A S 
Sbjct: 261 AREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSS 320

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  +  G   HS  +  G +S V V  +LV+MYA  G +++A KVF  M  RD VAW+++
Sbjct: 321 VKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTL 380

Query: 216 INGFASNGKPNEA----------------------------------LTLFREM-ASEGV 240
           I  +ASNG   +A                                  + +FREM  + G+
Sbjct: 381 IGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD  T +++  ACA LG L+  +  H  + +  L  NV V N L++ Y++CG +  A+R
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAER 500

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F   +++  VSW+ +V   +  G   EAL+LF+EM++ G  P +VT+  +L+ C+H G 
Sbjct: 501 LFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +++G+ YF  M + +G+ P  +HF  MVDLLGR+G +  A E +++M   P+ V W T L
Sbjct: 561 LEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
            AC IHG   + E A   + +L+P  +  Y+ +SN+YA    W  V  VR+ M +  +KK
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKK 680

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+  ++ EF  G + HP+T+EI   L  +   ++  GYVP T+ V  D+ E E
Sbjct: 681 LPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGE 740

Query: 541 KEDALSYHSEKIAIAFMLVNT-APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           KE  L YHSEK+AIAF LV++   G P+RVVKNLRVC+DCH A K I+++  R+I++RD 
Sbjct: 741 KETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDC 800

Query: 600 SRFHHF-KDGHCSCRDYW 616
           +RFH F  DG CSC DYW
Sbjct: 801 NRFHRFSSDGKCSCGDYW 818



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 187/341 (54%), Gaps = 6/341 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ +WN MI  YA++ +   A+ LY +M++ G+  D  T+  +L A S LA    G + H
Sbjct: 74  NVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIH 130

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           +    +G +S   + N+LV MYA FG V DA ++F+ +  RD  +WN+VI   + +G  +
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL +F+EM  + ++P+  T +++ S  +    L  GR+ H  +   G   ++ V  AL+
Sbjct: 191 GALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALI 249

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           + Y KCG    A+ VF +M+KR+ VSW+ ++     NG   EALEL++++++ GF   + 
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKA 309

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TFV +L ACS    + +G      +  E G+  ++     +V++  + G +++A + + N
Sbjct: 310 TFVSILGACSSVKALAQGRLVHSHIL-ERGLDSEVAVATALVNMYAKCGSLEEARK-VFN 367

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
            +   +AV W TL+GA   +G+   A  AR    +L  + +
Sbjct: 368 AMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 190/372 (51%), Gaps = 38/372 (10%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +Q  +  +WN +I  +++S +   A+ ++ +M    +KP++ TY  ++   S 
Sbjct: 161 AKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFST 219

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G + H+  + NGF+S + V  +L++MY   G   +A +VF+ M +RD+V+WN +
Sbjct: 220 PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +  NG  +EAL L++++  EG +    T VS+  AC+ + ALA GR  H+++ + GL
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE------- 328
              V V  AL++ Y+KCG +  A++VF  M+ R+AV+WSTL+   A NG+GK+       
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 329 ---------------------------ALELFKEME-IGGFVPGEVTFVGVLYACSHCGM 360
                                      A+++F+EM    G  P  VTF+ VL AC+  G 
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           + E  +   ++  E  +   +     ++++  R G +++A E +         V W  ++
Sbjct: 460 LSEVKALHAQIS-ESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMV 517

Query: 421 GACTIHGHSAIA 432
            A + +G  A A
Sbjct: 518 AAFSQYGRYAEA 529



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           +PD  T+  +L + S   DV  G   H     + FE    V N+L+ MY     + DA  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 200 VFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           VFE M   +R++V+WN++I  +A NG   EAL L+  M  +G+  D  T VS+  AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            +LA GR  H  V+  GL    ++ NAL+  Y++ G +  A+R+F+ ++ R+  SW+ ++
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           +  + +G    AL +FKEM+     P   T++ V+   S   ++ EG      +    G 
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GF 238

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
              +     ++++ G+ G   +A E    M    + V W  ++G    +G
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVQNG 287


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/512 (40%), Positives = 306/512 (59%), Gaps = 36/512 (7%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-------- 189
           GI  D      +L+A    +D R   Q+H+  I+ G+ +   +  SLV  YA        
Sbjct: 15  GILSDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLA 74

Query: 190 -------------------------AFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
                                      G    A +VF  M  RD+V WNS+I G   N +
Sbjct: 75  HQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNER 134

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  FREM +  VEPDG+T  S+ + CA LG+       H  + +  +  N  +++A
Sbjct: 135 FEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSA 194

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D YSKCG I  A++VF  ++  +   W++++ GLA++G   +A+ +F +ME+    P 
Sbjct: 195 LIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPD 254

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            +TF+G+L ACSHCG+V++G  YF  M+  Y I P++EH+G MVDLLGRAGLV++AY  I
Sbjct: 255 SITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMI 314

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + M M P+ VIWR LL AC    +  + E+A + +  L   +SGDY+LLSN+Y   ++W 
Sbjct: 315 KAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL---NSGDYILLSNMYCSLEKWD 371

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           + + VR  M ++ V+K  G S VELG  + +F  GDRSHP+T  I+ +L  + ++ KLEG
Sbjct: 372 SAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEG 431

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           ++P T+ V  D+ +EE+E+ L+ HSEK+A+A++++ T+PGT +RV KNLR C DCH  +K
Sbjct: 432 FMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMK 491

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           ++S++ SR I+VRDR RFH F+ G CSCRDYW
Sbjct: 492 ILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 2/226 (0%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            +A  +F  +   ++ TWN+MI G   +     A+  + +M  S ++PD  T+  ++   
Sbjct: 105 DFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGC 164

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++L      E  H + I    +    + ++L+ +Y+  G +  A KVF  +   D+  WN
Sbjct: 165 ARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWN 224

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK- 272
           S+ING A +G   +A+ +F +M  E V PD  T + + +AC+  G +  GRR    + + 
Sbjct: 225 SMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRH 284

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
             +   +    A++D   + G++  A  + + M  + + V W  L+
Sbjct: 285 YSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 330


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 322/583 (55%), Gaps = 27/583 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNIFTWNTMIRG 117
           ++VHAF ++      N  +   L+    S +  +S+A  +F  V +    +  WN MI G
Sbjct: 280 REVHAFVLKDDDLAANSFVASALVDMYAS-NEQVSHARRVFDMVPEHGRQLGMWNAMICG 338

Query: 118 YAESAN-PLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           YA+       A+EL+S+M   +G  P   T   +L A ++       E  H   ++    
Sbjct: 339 YAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMA 398

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S  FVQN+L+ MYA  G + +A  +F ++  RD+V+WN++I G    G  +EA  L REM
Sbjct: 399 SNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREM 458

Query: 236 -----ASEG---------------VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
                A+ G                 P+  T+++L   CA L A A G+  H Y  +  L
Sbjct: 459 QLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHAL 518

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ V +AL+D Y+KCG +  A+ VF  + +RN ++W+ L++   ++G G EAL LF  
Sbjct: 519 ESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDR 578

Query: 336 MEIGG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           M   G   P EVTF+  L ACSH G+VD G   F+ MK +YG  P      C+VD+LGRA
Sbjct: 579 MVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRA 638

Query: 395 GLVKQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           G + +AY  I +M    + V  W T+LGAC +H +  +  IA   L +LEP  +  YVLL
Sbjct: 639 GRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLL 698

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
            N+Y+    W N  EVR  M +  V K PG S +EL   +  F  G+ +HP++ ++HA +
Sbjct: 699 CNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHM 758

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             + ++++ EGYVP T  V  D++E EK   L YHSEK+AIAF L+   PG  +RV KNL
Sbjct: 759 DALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNL 818

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH A K IS++  REIV+RD  RFHHF+DG CSC DYW
Sbjct: 819 RVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 194/419 (46%), Gaps = 44/419 (10%)

Query: 46  ITLLQVC---ASSKHKL-KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHN 98
           +++L  C   A   H+L ++ HAF+++HG      +  ++   A++S+   +     A  
Sbjct: 156 VSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRE--RFPFNALLSMYARLGLVDDAQR 213

Query: 99  IF--SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
           +F  S     ++ TWNTMI    +      AV++   M   G++PD  T+   L A S+L
Sbjct: 214 LFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRL 273

Query: 157 ADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWN 213
             + +G + H+  ++ +   +  FV ++LV MYA+   V  A +VF+++ E  R L  WN
Sbjct: 274 ELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWN 333

Query: 214 SVINGFASNGKPN-EALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           ++I G+A +G  + EA+ LF  M +E G  P   TM  +  ACA           H YV 
Sbjct: 334 AMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVV 393

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K  ++ N  V NAL+D Y++ G +  A  +F  +  R+ VSW+TL+ G  V G   EA +
Sbjct: 394 KRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQ 453

Query: 332 LFKEMEIGG--------------------FVPGEVTFVGVLYACSHCGMVDEG---FSYF 368
           L +EM++                       +P  +T + +L  C+       G     Y 
Sbjct: 454 LVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYA 513

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            R    + +   +     +VD+  + G +  A   + + L   N + W  L+ A  +HG
Sbjct: 514 VR----HALESDLAVGSALVDMYAKCGCLALA-RAVFDRLPRRNVITWNVLIMAYGMHG 567



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 12/234 (5%)

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDACK 199
           D    P  +K+ + L D R     H  ++R          V N+L+  YA  G +  A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 200 VFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           +F       RD V++NS+I+      +   AL   R+M ++  E   +T+VS+  AC+ L
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHL 165

Query: 258 GALA--LGRRAHTYVWKVGLSDNVNVN---NALLDFYSKCGIIIAAQRVFREMRK--RNA 310
                 LGR AH +  K G  D        NALL  Y++ G++  AQR+F        + 
Sbjct: 166 ADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDL 225

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           V+W+T++  L   G  +EA+++  +M   G  P  VTF   L ACS   ++  G
Sbjct: 226 VTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVG 279



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 20/153 (13%)

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEM-- 336
           V+NALL  Y++CG + AA  +F       R+AVS+++L+  L +      AL+  ++M  
Sbjct: 87  VSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLA 146

Query: 337 --EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD---EYGIMPKIEH---FGCMV 388
             E+  F     T V VL ACSH  + D+G    +       ++G + K      F  ++
Sbjct: 147 DHEVSSF-----TLVSVLLACSH--LADQGHRLGREAHAFALKHGFLDKGRERFPFNALL 199

Query: 389 DLLGRAGLVKQAYE-YIQNMLMPPNAVIWRTLL 420
            +  R GLV  A   +  +     + V W T++
Sbjct: 200 SMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 327/561 (58%), Gaps = 12/561 (2%)

Query: 67  IRHG-------VPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           IRHG       V L    L  ++  A+V +      M  AH +F  V + ++  +  +I 
Sbjct: 117 IRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIV 176

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GYA+      A++++  M   G+KP+ +T   +L     L D+  G+  H + +++G ES
Sbjct: 177 GYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLES 236

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +V  Q SL+ MY+    ++D+ KVF  +   + V W S + G   NG+   A+++FREM 
Sbjct: 237 VVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMI 296

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
              + P+ +T+ S+  AC+ L  L +G + H    K+GL  N     AL++ Y KCG + 
Sbjct: 297 RCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMD 356

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A+ VF  + + + V+ ++++   A NGFG EALELF+ ++  G VP  VTF+ +L AC+
Sbjct: 357 KARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACN 416

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           + G+V+EG   F  +++ + I   I+HF CM+DLLGR+  +++A   I+  +  P+ V+W
Sbjct: 417 NAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEE-VRNPDVVLW 475

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           RTLL +C IHG   +AE   S +L+L P   G ++LL+NLYA   +W  V E++ T+   
Sbjct: 476 RTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDL 535

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
           ++KK+P  S V++   V  F  GD SHP++ EI  ML  + KK+K  GY P T  V  D+
Sbjct: 536 KLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDL 595

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNT-APGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EE+K  +L YHSEK+AIA+ L  T    T +R+ KNLRVC DCH  IK +S +  R+I+
Sbjct: 596 DEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDII 655

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
            RD  RFHHFK G CSC+DYW
Sbjct: 656 ARDSKRFHHFKGGLCSCKDYW 676


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 322/566 (56%), Gaps = 5/566 (0%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S H      A ++   +P  +      L+ A+      ++ A  +F  +   + F+W+ +
Sbjct: 71  SSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAI 130

Query: 115 IRGYAESANPLLAVELYSKM----HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +  +A    P  A+ +Y +M      +G+  +  T    L A +     R G + H   +
Sbjct: 131 VSAHARHGQPRAALAIYRRMLREPGSAGVD-NEFTASSALAAATAARCARAGRELHCHVV 189

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           R G ++   V ++L  MYA  G V DA  VF+ M  RD+V+W +++  +    +  E   
Sbjct: 190 RRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFR 249

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LF  M   G++P+ +T   +  ACAE  +  LG++ H  + K    D+    +AL+  YS
Sbjct: 250 LFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYS 309

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           K G +  A RVFR M K + VSW+ ++ G A NG   EAL  F  +   G  P  VTFVG
Sbjct: 310 KYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVG 369

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL AC+H G+VD+G S F  +KDEYGI    +H+ C++DLL R+GL ++A E I  M + 
Sbjct: 370 VLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVK 429

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           PN  +W +LLG C IH +  +A  A   L ++EP++   YV L+N+YA    +  V+  R
Sbjct: 430 PNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTR 489

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
           R M  + + K P  S +E+G R+  F +GD+ HPQ E+++A+L ++  K++ EGYV  T 
Sbjct: 490 RIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTG 549

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            V  D+E+E+K+  + YHSE++A+AF ++ T  G P++V KNLR+C DCH  IKLISK+ 
Sbjct: 550 FVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIV 609

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            REI+VRD +RFHHFK+G CSCRDYW
Sbjct: 610 QREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 324/566 (57%), Gaps = 16/566 (2%)

Query: 61  QVHAFSIRHGVP----LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           Q+H   ++ G      + N  +  Y      S    +  A  +F+ +   N+ +WN MI 
Sbjct: 126 QIHGMCVKSGFEWVSVVGNATIDMY------SKCGRIGMAEQVFNKMPFRNLVSWNAMIA 179

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G+    N   ++ L+ +M   G  PD  T+   LKA   L  +R G Q H+  I  GF  
Sbjct: 180 GHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPI 239

Query: 177 LV--FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFRE 234
            +   + +++V +YA  G++ +A KVF+ + +++L++W+++I GFA  G   EA+ LFR+
Sbjct: 240 SIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQ 299

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           +       DG+ +  +    A+L  +  G++ H Y+ KV    +++V N+++D Y KCG+
Sbjct: 300 LRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGL 359

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
              A+R+F EM+ RN VSW+ ++ G   +G G++A+ LF  M++ G    EV ++ +L A
Sbjct: 360 TEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSA 419

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
           CSH G++ E   YF R+ + + + P IEH+ CMVD+LGRAG +K+A   I+NM + PN  
Sbjct: 420 CSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEG 479

Query: 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474
           IW+TLL AC +HG+  I       L +++  +  +YV++SN+YA    W   + VR+ + 
Sbjct: 480 IWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVK 539

Query: 475 KERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVF 533
            + +KK  G S VE+   +  F+ GD +HP TE+IH ML E+ +++K E GY        
Sbjct: 540 AKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFAL 599

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTA---PGTPVRVVKNLRVCADCHLAIKLISKVY 590
            D+EEE KE+ L  HSEK+AI   LV       G  +RV KNLRVC DCH  IK +SK+ 
Sbjct: 600 HDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKIL 659

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            +  VVRD +RFH F+DG CSC DYW
Sbjct: 660 KKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 202/410 (49%), Gaps = 32/410 (7%)

Query: 61  QVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           QVHA ++  G    + +NN  +  Y   + V L      A ++F  + + N+ +W  ++ 
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDL------ACSVFDRMLERNVVSWTALMC 78

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY +  N   ++ L  +M  SG+KP+  T+   LKA   L  V  G Q H + +++GFE 
Sbjct: 79  GYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEW 138

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           +  V N+ + MY+  G +  A +VF  M  R+LV+WN++I G    G   ++L LF+ M 
Sbjct: 139 VSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQ 198

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN--VNNALLDFYSKCGI 294
            +G  PD +T  S   AC  LGA+  G + H  +   G   ++   + +A++D Y+KCG 
Sbjct: 199 GQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGY 258

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME-----IGGFVPGEVTFV 349
           +  AQ+VF  + ++N +SWS L+ G A  G   EA++LF+++      + GFV      +
Sbjct: 259 LFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLS--IMM 316

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMP---KIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           GV    +   +V++G    K+M      +P    I     ++D+  + GL ++A E + +
Sbjct: 317 GVF---ADLALVEQG----KQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEA-ERLFS 368

Query: 407 MLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLS 454
            +   N V W  ++     H  G  AI    R  L  +E        LLS
Sbjct: 369 EMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 135/274 (49%), Gaps = 4/274 (1%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL+  SK      G Q H+ A+  GF   + + N L+ MY     V  AC VF+ M ER+
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +V+W +++ G+   G    +L L  EM   GV+P+ +T  +   AC  LG +  G + H 
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHG 129

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              K G      V NA +D YSKCG I  A++VF +M  RN VSW+ ++ G    G G++
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRK 189

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF--GC 386
           +L LF+ M+  G VP E TF   L AC   G +  G      +    G    I +     
Sbjct: 190 SLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITR-GFPISIRNIIASA 248

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +VDL  + G + +A + + + +   N + W  L+
Sbjct: 249 IVDLYAKCGYLFEA-QKVFDRIEQKNLISWSALI 281



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           +  L   C++ G    G + H     +G   ++ +NN L+D Y KC  +  A  VF  M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           +RN VSW+ L+ G    G  K +L L  EM   G  P E TF   L AC   G+V+ G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 367 YFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
                +K  +  +  + +    +D+  + G +  A E + N +   N V W  ++   T 
Sbjct: 127 IHGMCVKSGFEWVSVVGN--ATIDMYSKCGRIGMA-EQVFNKMPFRNLVSWNAMIAGHTH 183

Query: 426 HGHS 429
            G+ 
Sbjct: 184 EGNG 187


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/526 (40%), Positives = 312/526 (59%), Gaps = 18/526 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  N+FTW TM+ GYA++    +A +L+  M      P+ +   +    +  
Sbjct: 195 ARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM------PERNEVSWTAMLMGY 248

Query: 156 LADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
               RM E          FE++    +   N ++  +   G +  A  +FE M ERD   
Sbjct: 249 TQSGRMKEAFEL------FEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGT 302

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I  F   G   EAL LF  M  EGV  +  +M+S+ S CA L +L  GR+ H  + 
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           +     ++ V + L+  Y KCG ++ A+ +F     ++ V W++++ G + +G G+EAL 
Sbjct: 363 RSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALN 422

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F +M   G  P EVTF+GVL ACS+ G V EGF  F+ MK  Y + P IEH+ CMVDLL
Sbjct: 423 VFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLL 482

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG V +A E ++ M M P+A++W  LLGAC  H    +AE+A   L +LEPK++G YV
Sbjct: 483 GRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYV 542

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD-RSHPQTEEIH 510
           LLS++YA + RW +V EV R  +  RV K PG S +E+  +V  F  GD +SHP+   I 
Sbjct: 543 LLSHMYATKGRWRDV-EVLRKKINRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMIT 601

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
            ML +++  L+  GY P    V  D++EEEK  +L YHSE++A+A+ L+    G P+RV+
Sbjct: 602 QMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVM 661

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH AIKLI+KV  REI++RD +RFHHFKDG CSC+D+W
Sbjct: 662 KNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 94/176 (53%)

Query: 88  SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP 147
            L+  M  A  +F  +++ +  TWN MI+ +      L A+ L+++M   G+  +  +  
Sbjct: 280 GLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMI 339

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +L   + LA +  G Q H+  +R+ F+  ++V + L+ MY   G +  A  +F     +
Sbjct: 340 SVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK 399

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           D+V WNS+I G++ +G   EAL +F +M S GV+PD  T + + SAC+  G +  G
Sbjct: 400 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEG 455



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 115/281 (40%), Gaps = 59/281 (20%)

Query: 96  AHNIFSHVQDPN--IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           A  +F +   P   I +WN M+  Y ES  P  A+ L+ +M      P  +T  F     
Sbjct: 38  ARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM------PQRNTVSF----- 86

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
                                       N ++  Y   G V DA KVF++M ER++V+W 
Sbjct: 87  ----------------------------NGMISGYVKNGMVADARKVFDVMPERNVVSWT 118

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR---AHTYV 270
           S++ G+   G   EA  LF EM    V           S    +G L    R   A    
Sbjct: 119 SMVRGYVQEGMVEEAEKLFWEMPRRNV----------VSWTVMIGGLLKESRIDDAKKLF 168

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
             +   D V V N ++  Y + G +  A+ +F EM+ RN  +W+T+V G A NG    A 
Sbjct: 169 DMIPEKDVVVVTN-MIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVAR 227

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +LF+ M        EV++  +L   +  G + E F  F+ M
Sbjct: 228 KLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAM 264



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 140/338 (41%), Gaps = 30/338 (8%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ +W +M+RGY +      A +L+ +M    +   T     LLK  S+
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE-SR 160

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           + D +              E  V V  +++  Y   G + +A ++F+ M  R++  W ++
Sbjct: 161 IDDAKKLFDMIP-------EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTM 213

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           ++G+A NG+ + A  LF E+  E  E     M+  ++    +        A    W V  
Sbjct: 214 VSGYAKNGRVDVARKLF-EVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVA- 271

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                 N  +L F    G +  A+ +F  M++R+  +W+ ++      G   EAL LF  
Sbjct: 272 -----CNEMILQF-GLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFAR 325

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM------KDEYGIMPKIEHFGCMVD 389
           M+  G      + + VL  C+    +D G     R+      +D Y     I  +    D
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGD 385

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           L+   G        I N  +  + V+W +++   + HG
Sbjct: 386 LVRAKG--------IFNRFLFKDVVMWNSMITGYSQHG 415



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 26/253 (10%)

Query: 181 QNSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
             S +  Y   G + +A KVF+   + +R + +WN++++ +  + KP +AL LF +M   
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP-- 79

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
             + +  +   + S   + G +A  R+    V+ V    NV    +++  Y + G++  A
Sbjct: 80  --QRNTVSFNGMISGYVKNGMVADARK----VFDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           +++F EM +RN VSW+ ++ GL       +A +LF        +P +   V       +C
Sbjct: 134 EKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFD------MIPEKDVVVVTNMIGGYC 187

Query: 359 --GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVI 415
             G +DE    F  MK     +  +  +  MV    + G V  A +  +  +MP  N V 
Sbjct: 188 QVGRLDEARELFDEMK-----VRNVFTWTTMVSGYAKNGRVDVARKLFE--VMPERNEVS 240

Query: 416 WRTLLGACTIHGH 428
           W  +L   T  G 
Sbjct: 241 WTAMLMGYTQSGR 253


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 337/572 (58%), Gaps = 5/572 (0%)

Query: 46   ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
            +++L  CA S++    + VH +S++ G+ +    L   L+    + S   S  + IF  +
Sbjct: 522  LSVLPACAQSRYWFAGRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWQS-TNQIFRSM 579

Query: 104  QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
               N+ +W  MI  Y  +        L  +M + GI+PD       L A +    ++ G+
Sbjct: 580  GQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGK 639

Query: 164  QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
              H   IRNG E L+ V N+L+ MY    +V++A  +F+ ++ +D+++WN++I G++ N 
Sbjct: 640  SVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNN 699

Query: 224  KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
             PNE+ +LF +M  +   P+  TM  +  A A + +L  GR  H Y  + G  ++   +N
Sbjct: 700  FPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASN 758

Query: 284  ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
            AL+D Y KCG ++ A+ +F  + K+N +SW+ ++ G  ++GFGK A+ LF++M   G  P
Sbjct: 759  ALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEP 818

Query: 344  GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
               +F  +LYAC H G+  EG  +FK M+ EY I PK++H+ C+VDLL R G +K+A E+
Sbjct: 819  DAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEF 878

Query: 404  IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463
            I++M + P++ IW +LL  C IH +  +AE     + +LEP+++G YVLL+N+YA  +RW
Sbjct: 879  IESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERW 938

Query: 464  LNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE 523
              V++++  +    +++  G+S +E+ ++V  F   +R+HP    I   L ++ ++++ E
Sbjct: 939  EAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQE 998

Query: 524  GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
            G+ P+ +      ++   ++AL  HS K+A+AF ++N   G P+RV KN +VC+ CH A 
Sbjct: 999  GHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAA 1058

Query: 584  KLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            K ISK+ +REI++RD SRFH F+ G CSCR Y
Sbjct: 1059 KFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 15/334 (4%)

Query: 33  SQENPITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGV---------PLNNPDLGKY 81
           SQ   I+SV    +++L  CA   + L  K VH +S++ G+          +++  LG  
Sbjct: 298 SQGTEISSVT--VLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
           L++  V     M+ A  +F  +    N+  WN ++ GYA+      ++ L+ +MH  GI 
Sbjct: 356 LVFMYVKCG-DMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIA 414

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           PD H    LLK I+ L+  R G   H   ++ GF +   V N+L+  YA    + DA  V
Sbjct: 415 PDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLV 474

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F  M  +D ++WNSVI+G +SNG  +EA+ LF  M ++G E D  T++S+  ACA+    
Sbjct: 475 FNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYW 534

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H Y  K GL    ++ NALLD YS C    +  ++FR M ++N VSW+ ++   
Sbjct: 535 FAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSY 594

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
              G   +   L +EM + G  P        L+A
Sbjct: 595 MRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 31/409 (7%)

Query: 42  VRKCITLLQVCASSK--HKLKQVHAF---SIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           VR    ++Q+C   +     K+ HA    S           LGK L+ A +     +  A
Sbjct: 97  VRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCG-DLGEA 155

Query: 97  HNIFSHV--QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
             +F  +  Q  ++  W +++  YA++ +   AV L+ +M   G+ PD H    +LK +S
Sbjct: 156 RTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVS 215

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
            L  +  GE  H +  + G      V N+L+ +Y+  G ++DA +VF+ M  RD ++WNS
Sbjct: 216 SLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNS 275

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I G  SNG    A+ LF +M S+G E    T++S+  ACA LG   +G+  H Y  K G
Sbjct: 276 MIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSG 335

Query: 275 L----------SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLAVN 323
           L           D+  + + L+  Y KCG + +A+RVF  M  +  V  W+ ++ G A  
Sbjct: 336 LLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKV 395

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVL-----YACSHCGMVDEGFSYFKRMKDEYGIM 378
           G  +E+L LF +M   G  P E     +L      +C+  G+V  G+        +  + 
Sbjct: 396 GEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVC 455

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
             +  F    +++G A LV        N +   + + W +++  C+ +G
Sbjct: 456 NALISFYAKSNMIGDAVLV-------FNRMPRQDTISWNSVISGCSSNG 497



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 160/335 (47%), Gaps = 15/335 (4%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F+ +   +  +WN++I G + +     A+EL+ +M   G + D+ T   +L A ++   
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
              G   H  +++ G      + N+L+ MY+     +   ++F  M ++++V+W ++I  
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITS 593

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +   G  ++   L +EM  +G+ PD + + S   A A   +L  G+  H Y  + G+   
Sbjct: 594 YMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKL 653

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           + V NAL++ Y KC  +  A+ +F  +  ++ +SW+TL+ G + N F  E+  LF +M +
Sbjct: 654 LPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLL 713

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKR---MKDEYGIMPKIEHFGCMVDLLG 392
             F P  VT   +L A +    ++ G    +Y  R   ++D Y           +VD+  
Sbjct: 714 -QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYA-------SNALVDMYV 765

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           + G +  A   + + L   N + W  ++    +HG
Sbjct: 766 KCGALLVA-RVLFDRLTKKNLISWTIMIAGYGMHG 799



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 4/182 (2%)

Query: 39  TSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98
            +V   CI       SS  + +++HA+++R G  L +      L+   V     +  A  
Sbjct: 718 NAVTMTCILPAAASISSLERGREIHAYALRRGF-LEDSYASNALVDMYVKCG-ALLVARV 775

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  +   N+ +W  MI GY        A+ L+ +M  SGI+PD  ++  +L A      
Sbjct: 776 LFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGL 835

Query: 159 VRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVI 216
              G +      +    E  +     +V + +  G +K+A +  E M  E D   W S++
Sbjct: 836 AAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLL 895

Query: 217 NG 218
           +G
Sbjct: 896 HG 897


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/616 (37%), Positives = 337/616 (54%), Gaps = 47/616 (7%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS-YA 96
           + S +  CI L Q+        KQ+H   +R G+  +   L K LI  +  L  PM  YA
Sbjct: 52  LISKLDDCINLNQI--------KQIHGHVLRKGLDQSCYILTK-LIRTLTKLGVPMDPYA 102

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +   VQ  N F W  +IRGYA       A+ +Y  M    I P + T+  LLKA   +
Sbjct: 103 RRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTM 162

Query: 157 ADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMY--------------------------- 188
            D+ +G Q H+   R  GF   V+V N+++ MY                           
Sbjct: 163 KDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 189 ----AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
               A  G+++ A ++FE +  +D+VAW +++ GFA N KP EAL  F  M   G+  D 
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLS--DNVNVNNALLDFYSKCGIIIAAQRVF 302
            T+    SACA+LGA     RA     K G S  D+V + +AL+D YSKCG +  A  VF
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 341

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMV 361
             M  +N  ++S++++GLA +G  +EAL LF  M     + P  VTFVG L ACSH G+V
Sbjct: 342 MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLV 401

Query: 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
           D+G   F  M   +G+ P  +H+ CMVDLLGR G +++A E I+ M + P+  +W  LLG
Sbjct: 402 DQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLG 461

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           AC IH +  IAEIA   L +LEP   G+Y+LLSN+YA    W  V  VR+ + ++ +KKT
Sbjct: 462 ACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKT 521

Query: 482 PGHS-LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
           P  S +V+   ++ +FF G+ +HP + +I   L E+ ++L + GY P   +V  D+ +  
Sbjct: 522 PAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNA 581

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           K   L  H+EK+A+AF L+ T   + + ++KNLR+C DCH  ++L S+V  + I++RD  
Sbjct: 582 KRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNM 641

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHF+ G CSC D+W
Sbjct: 642 RFHHFRSGDCSCGDFW 657


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/579 (39%), Positives = 317/579 (54%), Gaps = 14/579 (2%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSY 95
           +TSV+  C  L           +Q+H + +R      +P +   LI  Y+ V L   +  
Sbjct: 311 MTSVITACELL-----GDDRLGRQIHGYVLRTEFG-RDPSIHNSLIPMYSSVGL---IEE 361

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +FS  +  ++ +W  MI GY     P  A+E Y  M   GI PD  T   +L A S 
Sbjct: 362 AETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSC 421

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L ++ MG   H VA + G  S   V NSL+ MYA    +  A ++F    E+++V+W S+
Sbjct: 422 LCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSI 481

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G   N +  EAL  FREM    ++P+  T+V + SACA +GAL  G+  H +  + G+
Sbjct: 482 ILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGV 540

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S +  + NA+LD Y +CG +  A + F  +      SW+ L+ G A  G G  A ELF+ 
Sbjct: 541 SFDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQR 599

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M      P EVTF+ +L ACS  GMV EG  YF  MK +Y IMP ++H+ C+VDLLGR+G
Sbjct: 600 MVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSG 659

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +++AYE+IQ M M P+  +W  LL +C IH H  + E+A   + Q +    G Y+LLSN
Sbjct: 660 KLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSN 719

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           LYA   +W  V EVR+ M +  +   PG S VE+   V  F   D  HPQ +EI+A+L  
Sbjct: 720 LYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLER 779

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
             KK+K E  V   E+   DI E  K D    HSE++AI F L+N+ PG P+ V KNL +
Sbjct: 780 FYKKMK-EAGVEGPESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYM 838

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           C  CH  +K IS+   REI VRD  +FHHFK G CSC D
Sbjct: 839 CQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 2/322 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  ++  N+F+WN ++ GYA++     A++LY +M   G+KPD +T+P +L+    + +
Sbjct: 163 VFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPN 222

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           +  G + H   IR GFES V V N+L+ MY   G V  A  VF+ M  RD ++WN++I+G
Sbjct: 223 LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISG 282

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  NG   E L LF  M    V+PD  TM S+ +AC  LG   LGR+ H YV +     +
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
            +++N+L+  YS  G+I  A+ VF     R+ VSW+ ++ G       ++ALE +K ME 
Sbjct: 343 PSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEA 402

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            G +P E+T   VL ACS    +D G +  +  K + G++        ++D+  +   + 
Sbjct: 403 EGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQK-GLVSYSIVANSLIDMYAKCKCID 461

Query: 399 QAYEYIQNMLMPPNAVIWRTLL 420
           +A E   + L   N V W +++
Sbjct: 462 KALEIFHSTL-EKNIVSWTSII 482



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 184/377 (48%), Gaps = 14/377 (3%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +++H   IR+G   ++ D+   LI   V     ++ A  +F  + + +  +WN MI GY 
Sbjct: 227 REIHVHVIRYGFE-SDVDVVNALITMYVKCG-DVNTARLVFDKMPNRDRISWNAMISGYF 284

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           E+   L  + L+  M    + PD  T   ++ A   L D R+G Q H   +R  F     
Sbjct: 285 ENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPS 344

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           + NSL+ MY++ G +++A  VF     RDLV+W ++I+G+ +   P +AL  ++ M +EG
Sbjct: 345 IHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEG 404

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           + PD  T+  + SAC+ L  L +G   H    + GL     V N+L+D Y+KC  I  A 
Sbjct: 405 IMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKAL 464

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
            +F    ++N VSW+++++GL +N    EAL  F+EM I    P  VT V VL AC+  G
Sbjct: 465 EIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIG 523

Query: 360 MVDEG---FSYFKRMKDEY-GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
            +  G    ++  R    + G MP       ++D+  R G  +  Y + Q   +      
Sbjct: 524 ALTCGKEIHAHALRTGVSFDGFMPN-----AILDMYVRCG--RMEYAWKQFFSVDHEVTS 576

Query: 416 WRTLLGACTIHGHSAIA 432
           W  LL      G  A A
Sbjct: 577 WNILLTGYAERGKGAHA 593



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 135/276 (48%), Gaps = 5/276 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS-VAIRNGFESLVFVQNSLV 185
           A+     MH   I  +   Y  L++        + G + +S V+I     SL  + N+L+
Sbjct: 90  AMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQ-LGNALL 148

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
            M+  FG++ DA  VF  M +R+L +WN ++ G+A  G  +EAL L+  M   GV+PD Y
Sbjct: 149 SMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVY 208

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T   +   C  +  L  GR  H +V + G   +V+V NAL+  Y KCG +  A+ VF +M
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
             R+ +SW+ ++ G   NG   E L LF  M      P  +T   V+ AC   G    G 
Sbjct: 269 PNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGR 328

Query: 366 SYFKR-MKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
                 ++ E+G  P I +   ++ +    GL+++A
Sbjct: 329 QIHGYVLRTEFGRDPSIHN--SLIPMYSSVGLIEEA 362


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 314/528 (59%), Gaps = 15/528 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLL 150
           +S A  IF  +   N+  W +MI GYA +    +A +L+  M      PD +  T+  +L
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PDKNEVTWTAML 240

Query: 151 KAISKLADV-RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
           K  ++   +    E   ++ ++      V   N ++  +   G V  A  VF+ M E+D 
Sbjct: 241 KGYTRSGRINEAAELFKAMPVKP-----VAACNGMIMGFGLNGEVGKARWVFDQMKEKDD 295

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
             W+++I  +   G   EAL LF  M  EGV P+  +++S+ S C  L +L  GR+ H+ 
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQ 355

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + +     ++ V++ L+  Y KCG ++  +RVF     ++ V W++++ G A +GFG++A
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE+F EM   G  P E+TF+GVL AC + G V EG   F+ MK +Y +  K EH+ CMVD
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVD 475

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG + +A   I+NM +  +A++W  LL AC  H +  +AEIA   LLQLEP  +G 
Sbjct: 476 LLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGP 535

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF-MGDRSHPQTEE 508
           Y+LLSNLYA + RW +V E+R+TM    V K+PG S +E+ N+V  F   G  SHP+ E 
Sbjct: 536 YILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEM 595

Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
           I   L ++   L+  GY P    V  D++EE+K  +L +HSEK+A+A+ L+    G P+R
Sbjct: 596 IMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIR 655

Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           V+KNLRVC DCH AIKLI++V  REI++RD +RFHHFKDG CSCRD+W
Sbjct: 656 VMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 118/276 (42%), Gaps = 51/276 (18%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A NIF  +Q   + +WN ++ GY  +  P  A +L+ KM      P+ +T  +       
Sbjct: 35  ARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PERNTISW------- 81

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                                     N LV  Y   G + +A KVF+ M ER++V+W S+
Sbjct: 82  --------------------------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSM 115

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           + G+   G  +EA  LF  M  + V     +   +     E G +   RR       + +
Sbjct: 116 VRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFDM---IPV 168

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            D V   N +    S+ G +  A+ +F EM +RN V+W++++ G A+N     A +LF+ 
Sbjct: 169 KDVVASTNMIGGLCSE-GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEV 227

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           M        EVT+  +L   +  G ++E    FK M
Sbjct: 228 MPD----KNEVTWTAMLKGYTRSGRINEAAELFKAM 259



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 34/281 (12%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F  + + N+ +W +M+RGY +      A  L+ +M      P+ +   + +  
Sbjct: 94  ISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM------PEKNVVSWTVML 147

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
              + D R+ E       R  F+ +    V    +++    + G + +A ++F+ M +R+
Sbjct: 148 GGLIEDGRVDEA------RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRN 201

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEG-----VEPDGYTMVSLFSACAELGALALG 263
           +VAW S+I+G+A N K + A  LF  M  +          GYT     +  AEL      
Sbjct: 202 VVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAEL------ 255

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
                  +K      V   N ++  +   G +  A+ VF +M++++  +WS L+      
Sbjct: 256 -------FKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERK 308

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           GF  EAL LF  M+  G  P   + + +L  C     +D G
Sbjct: 309 GFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 42/316 (13%)

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           +  R+ F S   +    +  +A  G +  A  +F+ +  + + +WN+++ G+  N +P E
Sbjct: 6   IPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAE 65

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A  LF +M     E +  +   L S   + G ++  R+    V+      NV    +++ 
Sbjct: 66  AQKLFDKMP----ERNTISWNGLVSGYVKNGMISEARK----VFDKMPERNVVSWTSMVR 117

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y + G+I  A+ +F  M ++N VSW+ ++ GL  +G   EA  LF  + +   V     
Sbjct: 118 GYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVV-ASTN 176

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDE------------------------YGIMPKIEH 383
            +G L  CS  G + E    F  M                           + +MP    
Sbjct: 177 MIGGL--CSE-GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNE 233

Query: 384 FGCMVDLLG--RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
                 L G  R+G + +A E  + M + P A     ++G     G +     AR    Q
Sbjct: 234 VTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMG----FGLNGEVGKARWVFDQ 289

Query: 442 LEPKHSGDYVLLSNLY 457
           ++ K  G +  L  +Y
Sbjct: 290 MKEKDDGTWSALIKIY 305


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/491 (40%), Positives = 307/491 (62%), Gaps = 2/491 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ +WN MI GYAE+ N   A+EL+  M  + ++PD  T   ++ A ++
Sbjct: 176 AQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 235

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G Q HS    +GF S + + N+L+ +Y+  G ++ AC +FE +  +D+++WN++
Sbjct: 236 SGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTL 295

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK--V 273
           I G+       EAL LF+EM   G  P+  TM+S+  ACA LGA+ +GR  H Y+ K   
Sbjct: 296 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 355

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           G+++  ++  +L+D Y+KCG I AA +VF  +  ++  SW+ ++ G A++G    + ++F
Sbjct: 356 GVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIF 415

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
             M   G  P ++TFVG+L ACSH GM+D G   F+ M  +Y + PK+EH+GCM+DLLG 
Sbjct: 416 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 475

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
           +GL K+A E I  M M P+ VIW +LL AC +HG+  + E     L+++EP++ G YVLL
Sbjct: 476 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLL 535

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+YA   RW  V   R  +  + +KK PG S +E+ + V EF +GD+ HP+  EI+ ML
Sbjct: 536 SNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 595

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
            E+   L+  G+VP T  V  ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 596 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 655

Query: 574 RVCADCHLAIK 584
           RVC +CH A K
Sbjct: 656 RVCRNCHEAYK 666



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 221/409 (54%), Gaps = 40/409 (9%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQDPNIFTWNTMI 115
             L+ +HA  I+ G+   N  L K + + I+S  F  + YA ++F  +Q+PN+  WNTM 
Sbjct: 4   QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           RG+A S++P+ A++LY  M   G+ P+++T+PFLLK+ +K    + G+Q H   ++ G +
Sbjct: 64  RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA------------------------ 211
             ++V  SL+ MY   G ++DA KVF+    RD+V+                        
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 212 -------WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
                  WN++I+G+A  G   EAL LF++M    V PD  TMV++ SACA+ G++ LGR
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           + H+++   G   N+ + NAL+D YSKCG +  A  +F  +  ++ +SW+TL+ G     
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG----FSYFKRMKDEYGIMPK 380
             KEAL LF+EM   G  P +VT + +L AC+H G +D G        KR+K   G+   
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK---GVANA 360

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
                 ++D+  + G ++ A++ + N ++  +   W  ++    +HG +
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMHGRA 408


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/505 (40%), Positives = 311/505 (61%), Gaps = 17/505 (3%)

Query: 127 AVELYSKMHVSG----IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV--FV 180
           A+ LY+ + +S     ++P+  TYP L +A      + +   THSV       +     +
Sbjct: 103 ALSLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALAL--ATHSVKFLGAHAASCDRVL 160

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA---------SNGKPNEALTL 231
             +L+ ++A  G +    +VF+ ++  DL AWN++++ +A         +    +  L L
Sbjct: 161 GAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILEL 220

Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           F  M S  +EP+  T+V++  AC ELGA++ G  AHTY  K  L+ N  V  AL++ Y+ 
Sbjct: 221 FVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAG 280

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
           CG +  A++VF     R+   ++ ++ GLAV+G G+ AL L   M   G     VT + V
Sbjct: 281 CGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSV 340

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           + AC+H G+VDEG  YF RM+ E+GI P+IEH+GCM+D+L RAG +  A + I  ML+ P
Sbjct: 341 MCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVP 400

Query: 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471
           NA I+R+L+ AC IHG   + E   + L++LEP  SG++VL+SN YA   RW + ++ R+
Sbjct: 401 NAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARK 460

Query: 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTEN 531
            M    + K PG SLV++   + EF +GD++HP ++EI+ M+ EI  +L   G    T +
Sbjct: 461 EMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSS 520

Query: 532 VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYS 591
              D+EEE+K D LSYHSE++AIAF L+ + PG P+R++KNLRVCADCH + KL+S+VY 
Sbjct: 521 ALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 580

Query: 592 REIVVRDRSRFHHFKDGHCSCRDYW 616
           REIV+RDR+RFHHF+DG CSC D+W
Sbjct: 581 REIVMRDRTRFHHFRDGVCSCGDFW 605


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 338/572 (59%), Gaps = 5/572 (0%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LLQ+CA ++  +  +  HA  IR G+ ++   L   ++  + S    +  A   F+ +  
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMD--ILTSNMLINMYSKCSLVDSARKKFNEMPV 106

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ +WNT+I    ++A    A++L  +M   G   +  T   +L   +    +    Q 
Sbjct: 107 KSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQL 166

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ +I+   +S  FV  +L+H+YA    +KDA ++FE M E++ V W+S++ G+  NG  
Sbjct: 167 HAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFH 226

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL +FR     G + D + + S  SACA L  L  G++ H    K G   N+ V+++L
Sbjct: 227 EEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSL 286

Query: 286 LDFYSKCGIIIAAQRVFRE-MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +D Y+KCG I  A  VF+  +  R+ V W+ ++ G A +    EA+ LF++M+  GF P 
Sbjct: 287 IDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPD 346

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           +VT+V VL ACSH G+ +EG  YF  M  ++ + P + H+ CM+D+LGRAGLV +AY+ I
Sbjct: 347 DVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLI 406

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + M     + +W +LL +C I+G+   AEIA   L ++EP ++G+++LL+N+YA  ++W 
Sbjct: 407 ERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWD 466

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
            V   R+ + +  V+K  G S +E+ N++  F +G+R+HPQ ++I+A L  +  +LK   
Sbjct: 467 EVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLN 526

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           Y   T N   D+EE  K+  L +HSEK+AI F L+      P+R++KNLR+C DCH  +K
Sbjct: 527 YKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMK 586

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           L+SK  SREI+VRD +RFHHFKDG CSC ++W
Sbjct: 587 LVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 1/287 (0%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           +LL+  +K      G   H+  IR G E  +   N L++MY+    V  A K F  M  +
Sbjct: 48  YLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVK 107

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
            LV+WN+VI     N +  EAL L  +M  EG   + +T+ S+   CA   A+    + H
Sbjct: 108 SLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLH 167

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
            +  K  +  N  V  ALL  Y+KC  I  A ++F  M ++NAV+WS+++ G   NGF +
Sbjct: 168 AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHE 227

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EAL +F+  ++ GF          + AC+    + EG      +  + G    I     +
Sbjct: 228 EALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEG-KQVHAISHKSGFGSNIYVSSSL 286

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           +D+  + G +++AY   Q +L   + V+W  ++     H  +  A I
Sbjct: 287 IDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMI 333


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/527 (40%), Positives = 315/527 (59%), Gaps = 6/527 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F    + ++  W  MI  YA +     A+EL  +M + GIK    TY  LL A + 
Sbjct: 187 AERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACAS 246

Query: 156 LADVRMGEQTHSVAIRNGFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
             D+R G   H  A   G + S   V  +LV++Y   G V DA +V + M  R  V+W +
Sbjct: 247 TMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTA 306

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV- 273
           +I  +A NG   EA+ LF+ M  EG EP   T++S+  +CA LG L+LG+R H  +    
Sbjct: 307 MIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSP 366

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFR--EMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             S ++ + NA++  Y KCG +  A+ VF    +R R+ V+W+ ++   A NG G+EA+E
Sbjct: 367 SFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIE 426

Query: 332 LFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           LF+EM I GG  P  VTF+ VL ACSH G +++ + +F  M  ++G+ P  +H+ C+VDL
Sbjct: 427 LFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDL 486

Query: 391 LGRAGLVKQAYEYI-QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LGRAG + +A + + ++     + V W   L AC ++G    ++ A   + +LEP++   
Sbjct: 487 LGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAG 546

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
            VLLSN+YA + R  +V  +R  M    VKK  G S +E+ NRV EF + D SHP+  EI
Sbjct: 547 RVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEI 606

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           ++ L  + +++K  GYVP T+ V  D++EE+K   L YHSE++A+A  +++T PGT +RV
Sbjct: 607 YSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRV 666

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VKNLRVC+DCH A K IS++  R+I+VRD SRFHHFKDG CSC DYW
Sbjct: 667 VKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 170/355 (47%), Gaps = 3/355 (0%)

Query: 75  NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           N  LG  L+ A  S    +  A   F  +   N  +WN ++  YA++ +P  A  L+  M
Sbjct: 66  NTFLGNVLVDAY-SKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWM 124

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
              G++P+  T    L A +   ++ +G + + +      E    V++SL+ MY     +
Sbjct: 125 CSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREI 184

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
           ++A + F+   E+D+V W ++I+ +A N + + AL L R M  EG++    T VSL  AC
Sbjct: 185 EEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDAC 244

Query: 255 AELGALALGRRAHTYVWKVGLSDNVN-VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           A    L  G   H     +GL  +   V   L++ Y KCG +  A+RV   M  R +VSW
Sbjct: 245 ASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSW 304

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + ++   A NG   EA+ LF+ M++ G  P ++T + V+ +C+  G +  G     R++ 
Sbjct: 305 TAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRS 364

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHG 427
                  +     ++ + G+ G ++ A E  + + L   + V W  ++ A   +G
Sbjct: 365 SPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNG 419



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 5/309 (1%)

Query: 146 YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
           Y  LL     L +VR   + H+       +   F+ N LV  Y+  G +  A   F  ++
Sbjct: 38  YASLLWQCRGLDEVR---KLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT 94

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
             +  +WN ++  +A NG P  A TLF  M S+GV P+  T+ +   AC     LALGR+
Sbjct: 95  LHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRK 154

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            +  +    L  + +V ++L+  Y +C  I  A+R F    +++ V W+ ++   A N  
Sbjct: 155 LNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWR 214

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
              ALEL + M++ G   G  T+V +L AC+    +  G ++ +R              G
Sbjct: 215 TSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAG 274

Query: 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445
            +V+L G+ G V  A   +  M +   +V W  ++ A   +G++A A I     + LE  
Sbjct: 275 TLVNLYGKCGRVDDARRVLDAMPV-RTSVSWTAMIAAYAQNGNAAEA-INLFQCMDLEGA 332

Query: 446 HSGDYVLLS 454
              D  L+S
Sbjct: 333 EPSDITLIS 341


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 320/560 (57%), Gaps = 8/560 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           +Q H ++++ G         +Y+  A++ +      M  A  +F  V   + F +N+MI 
Sbjct: 128 RQCHGYAVKAGFAEQ-----RYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMIN 182

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           GY +      ++ +   M     K D  +Y  +L   + + D  +G Q H+ A++   E 
Sbjct: 183 GYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLEL 242

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            V+V ++LV MY    HV DA + FE++ E+++V+W +V+  +  N    +AL LF +M 
Sbjct: 243 NVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDME 302

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            EGV+P+ +T     ++CA L AL  G      V K G  D++ V+NAL++ YSK G I 
Sbjct: 303 MEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIE 362

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A RVF  M  R+ VSW+ ++ G A +G  +E +E F  M     +P  VTFVGVL AC+
Sbjct: 363 DAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACA 422

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
             G+VDE F Y   M  E GI P  EH+ CMV LL R G + +A  +I N  +  + V W
Sbjct: 423 QLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAW 482

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           R+LL +C ++ +  +       +LQLEP   G YVLLSN+YA   RW  V +VR+ M + 
Sbjct: 483 RSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRER 542

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            V+K+PG S + +G+ V  F   ++ HPQ ++I   L E+  ++K  GYVP    V  DI
Sbjct: 543 AVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDI 602

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           ++E KE+ L YHSEK+A+AF L++T  G  + ++KNLR+C DCH+AIKLIS V SR+IVV
Sbjct: 603 DDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVV 662

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD  RFH  + G CSC DYW
Sbjct: 663 RDAVRFHCIEGGICSCNDYW 682



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 9/264 (3%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N  + N ++ GYA S     +++L   + V     + +    L  A+S 
Sbjct: 64  ARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQL---LRVVDFGMNEYV---LSAAVSA 117

Query: 156 LADVR---MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            A+VR   MG Q H  A++ GF    +V N++++MY    H++DA KVFE +S  D  A+
Sbjct: 118 TANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAF 177

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+ING+   G+ + +L + R M  E  + D  + V++   CA +    LG + H    K
Sbjct: 178 NSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALK 237

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  NV V +AL+D Y KC  +  A R F  + ++N VSW+ ++     N   ++AL+L
Sbjct: 238 KRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQL 297

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS 356
           F +ME+ G  P E T+   L +C+
Sbjct: 298 FLDMEMEGVQPNEFTYAVALNSCA 321



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 14/272 (5%)

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
            D+  G+  H+  I      +V   N+L+  YA  G V  A  VF+ M  R+ V+ N ++
Sbjct: 25  GDLSKGKALHARLITAAHFDVVL-HNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLM 83

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +G+AS+G+  E+L L R +   G+    Y + +  SA A + +  +GR+ H Y  K G +
Sbjct: 84  SGYASSGRHKESLQLLR-VVDFGMNE--YVLSAAVSATANVRSYDMGRQCHGYAVKAGFA 140

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           +   V NA+L  Y +C  +  A +VF  +   +A ++++++ G    G    +L + + M
Sbjct: 141 EQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNM 200

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE---HFG-CMVDLLG 392
                    V++V VL    HC  + +  S          +  ++E   + G  +VD+ G
Sbjct: 201 TGEAEKWDYVSYVAVL---GHCASMKD--SVLGAQVHAQALKKRLELNVYVGSALVDMYG 255

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
           +   V  A    + +L   N V W  ++ A T
Sbjct: 256 KCDHVHDANRAFE-VLPEKNVVSWTAVMTAYT 286


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 314/523 (60%), Gaps = 11/523 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W TMI GY ++    +A +L+  M     + +  ++  +LK  + 
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTN 327

Query: 156 LADV-RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              +    E  +++ I++     V   N+++  +   G V  A +VF+ M E+D   W++
Sbjct: 328 CGRLDEASELFNAMPIKS-----VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I  +   G   +AL LFR M  EG+ P+  +++S+ S CA L  L  GR  H  + +  
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V V + LL  Y KCG +  A++VF     ++ V W++++ G A +G G EAL +F 
Sbjct: 443 FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFH 502

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M   G +P +VTFVGVL ACS+ G V +G   F  M+ +Y +  KIEH+ CMVDLLGRA
Sbjct: 503 DMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRA 562

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A + I+ M M  +A+IW  LLGAC  H    +AE+A   LL LEPK++G ++LLS
Sbjct: 563 GKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLS 622

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS-HPQTEEIHAML 513
           N+YA + RW +V E+RR M   RV K PG S + +  +V +F  GD S HP+  EI+ +L
Sbjct: 623 NIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRIL 682

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             ++  L+  GY P    V  D++EEEK  +L YHSEK+A+A+ L+    G P+RV+KNL
Sbjct: 683 EWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNL 742

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH AIKLI+KV  REI++RD +RFHHFKDG CSCRDYW
Sbjct: 743 RVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 60/314 (19%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++D NI +WN+++ GY ++  P  A  ++ KM                     
Sbjct: 117 ARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS-------------------- 156

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                              E      N LV  Y   G + +A +VF+ M ER++V+W ++
Sbjct: 157 -------------------ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAM 197

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH--TYVWKV 273
           + G+   G  +EA TLF +M  + V           S    LG L    R      ++ +
Sbjct: 198 VRGYVKEGMISEAETLFWQMPEKNV----------VSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
               +V     ++  Y + G ++ A+ +F EM +RN VSW+T++ G   N     A +LF
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF 307

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           + M        EV++  +L   ++CG +DE    F  M      +  +     M+   G+
Sbjct: 308 EVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMP-----IKSVVACNAMILCFGQ 358

Query: 394 AGLVKQAYEYIQNM 407
            G V +A +    M
Sbjct: 359 NGEVPKARQVFDQM 372



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 161/375 (42%), Gaps = 45/375 (12%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           + +  +NSL+  Y+  G ++ A  VF+ M ++++++WNS++ G+  N +P EA  +F +M
Sbjct: 96  NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM 155

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           +    E +  +   L S     G +   R     V+      NV    A++  Y K G+I
Sbjct: 156 S----ERNTISWNGLVSGYINNGMINEARE----VFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME----------IGGFVP-G 344
             A+ +F +M ++N VSW+ ++ GL   G   EA  LF  M           IGG+   G
Sbjct: 208 SEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 345 EVTFVGVLY-------ACSHCGMVDEGFSYFKRM---KDEYGIMPKIEHFGCMVDLLG-- 392
            +    +L+         S   M+  G+   +++   +  + +MP+         L G  
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMI-TGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
             G + +A E      MP  +V+    +  C   G +     AR    Q+  K  G +  
Sbjct: 327 NCGRLDEASELFN--AMPIKSVVACNAMILC--FGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKT-PGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           +  +Y  +   L+  E+ R M +E ++   P  SL+     V     G  +     EIHA
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFP--SLIS----VLSVCAGLANLDHGREIHA 436

Query: 512 MLAEITKKLKLEGYV 526
            L  +  +  L+ YV
Sbjct: 437 QL--VRSQFDLDVYV 449



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIF 100
           I++L VCA  ++    +++HA  +R     +  DL  Y+   ++S+      ++ A  +F
Sbjct: 416 ISVLSVCAGLANLDHGREIHAQLVR-----SQFDLDVYVASVLLSMYIKCGNLAKAKQVF 470

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
                 ++  WN++I GYA+    + A+ ++  MH SGI PD  T+  +L A S   +V+
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530

Query: 161 MG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVI 216
            G E  +S+  +   E  +     +V +    G + +A  + E M  E D + W +++
Sbjct: 531 KGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 322/561 (57%), Gaps = 11/561 (1%)

Query: 60   KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
            + VH F IR  +   +P+L  +L  A++ L   +  +   H +F  +++  I +WNT+I 
Sbjct: 519  RSVHGFVIRRAM---DPEL-DFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLIS 574

Query: 117  GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG-FE 175
             +  +  P  A+ L+ +M   G+ PD+++    L A   ++  ++G Q H   I+ G F 
Sbjct: 575  IFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN 634

Query: 176  SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
               FVQN+L+ MYA  G V  A K+FE + E+ LV WNS+I GF+ NG   EA+TLF +M
Sbjct: 635  D--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 692

Query: 236  ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
                V+ D  T +S+  AC+ LG L  G+  H  +   GL  +  ++ AL D YSKCG +
Sbjct: 693  YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 752

Query: 296  IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
              A  VF  M +R+ VSWS ++ G  ++G     + LF +M   G  P ++TF+ +L AC
Sbjct: 753  QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 812

Query: 356  SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
            SH G V+EG  YF  M  E+G+ PK +HF CMVDLL RAG +  AY+ I ++  P N+ I
Sbjct: 813  SHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSI 871

Query: 416  WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
            W  LL  C IH    I +     LL ++   +G Y LLSN+YA E  W    +VR  M  
Sbjct: 872  WGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKS 931

Query: 476  ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
            + ++K PG+S +E+  +++ F  GD SH QT++I+  L      +  + Y    +N    
Sbjct: 932  KGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVG 991

Query: 536  IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
              +  KE+ +  HSEK+AIAF ++NT PGT +R+ KNLRVC DCH   K+ SK+  REI+
Sbjct: 992  TSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREII 1051

Query: 596  VRDRSRFHHFKDGHCSCRDYW 616
            +RD +RFH F++G CSC DYW
Sbjct: 1052 MRDLNRFHCFRNGSCSCNDYW 1072



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 134/283 (47%), Gaps = 38/283 (13%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI--------NGFAS------NGK 224
           F+   L+  Y   G  ++A  ++  M  +D    ++ +        +GF        NG+
Sbjct: 412 FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQ 471

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL--------GRRAHTYVWKVGLS 276
            +E L +F +M SE VEPD  TM+S+  AC+ELG+L L        GR  H +V +  + 
Sbjct: 472 ASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMD 531

Query: 277 DNVN-VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             ++ +  AL++ Y+  G +    +VF  ++++  +SW+TL+     NG  +EAL LF +
Sbjct: 532 PELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQ 591

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-YGIMPKIEHF-----GCMVD 389
           M+  G +P   +    L AC        G   F ++  + +G + K  +F       ++D
Sbjct: 592 MQTQGLMPDSYSLASSLSAC--------GTISFSQLGAQIHGYIIKTGNFNDFVQNALID 643

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +  + G V  A +  +  +   + V W +++   + +G+S  A
Sbjct: 644 MYAKCGFVHSANKMFEK-IKEKSLVTWNSMICGFSQNGYSVEA 685


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 316/521 (60%), Gaps = 13/521 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N F   +   G   SA  L A+   S      ++P+  TYP L +A      + +   TH
Sbjct: 106 NSFLLASSSPGCLPSALSLYALLFLSSSSPPLLRPNAFTYPPLFRAAPPALALAL--ATH 163

Query: 167 SVAIRNGFESLV--FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA---- 220
           S+       +     +  +L+ ++A  G +    KVF+ ++  DL AWN++++ +A    
Sbjct: 164 SIKFLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRA 223

Query: 221 -----SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
                ++   +  L +F  M S  ++P+  T+V++  AC ELGA++ G  AHTY  K  L
Sbjct: 224 RDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRL 283

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N  V  AL++ Y+ CG +  A++VF     R+   ++ ++ GLAV+G G+ AL LF  
Sbjct: 284 AVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDR 343

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G     VT + V+ AC+H G+VDEG  YF RM+ E+GI P IEH+GCMVD+L RAG
Sbjct: 344 MHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAG 403

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +  A + I  M + PNA I+R+L+ AC IHG   + +   + L++LEP  SG++VL+SN
Sbjct: 404 RLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISN 463

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
            YA   RW + ++ R+ M    + K+PG S V++   + EF +GD++HP ++EI+AM+ +
Sbjct: 464 FYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVED 523

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I  +L   G+   T +   D+EEE+K DALSYHSE++AIAF L+ + PG P+R++KNLRV
Sbjct: 524 IETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRV 583

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CADCH + KL+S+VY REIV+RDR+RFHHF+DG CSC D+W
Sbjct: 584 CADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 332/578 (57%), Gaps = 34/578 (5%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I++L  CA S      K VH+ +I+      +  +N  L  Y      S    +  A  +
Sbjct: 117 ISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMY------SKCGDLDGALRV 170

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + N+ +W +MI GY        A+ L  +M   G+K D      +L A ++   +
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 230

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H     N   S +FV N+L+ MYA  G ++ A  VF  M  +D+++WN+++   
Sbjct: 231 DNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE- 289

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                               ++PD  TM  +  ACA L AL  G+  H Y+ + G S + 
Sbjct: 290 --------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 329

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V NAL+D Y KCG++  A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F EM   
Sbjct: 330 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 389

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EV+F+ +LYACSH G++++G+ +F  MK+++ I PK+EH+ CMVDLL R G + +
Sbjct: 390 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 449

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AY++I+ + + P+A IW  LL  C I+    +AE     + +LEP+++G YVLL+N+YA 
Sbjct: 450 AYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 509

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR-SHPQTEEIHAMLAEITK 518
            ++W  V+ +R  + K+ ++K PG S +E+  RV  F  G+  SHP +++I ++L ++ +
Sbjct: 510 AEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRR 569

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EGY P+T+    + +E +KE AL  HSEK+A+AF L+   P   +RV KNLRVC D
Sbjct: 570 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 629

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK   REIV+RD +RFHHFKDG+CSCR +W
Sbjct: 630 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 182/382 (47%), Gaps = 46/382 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      + +Y +M   GI  D  T   +L   +K
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  HS+AI++ FE  +   N+L+ MY+  G +  A +VFE M ER++V+W S+
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  +G  + A+ L ++M  EGV+ D   + S+  ACA  G+L  G+  H Y+    +
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N+ V NAL+D Y+KCG +  A  VF  M  ++ +SW+T+V                  
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------------ 287

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVD 389
              G   P   T   +L AC+         S  +R K+ +G + +  +         +VD
Sbjct: 288 ---GELKPDSRTMACILPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVD 337

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           L  + G++  A   + +M+   + V W  ++    +HG+   AIA         +EP   
Sbjct: 338 LYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD-- 394

Query: 448 GDYVLLSNLYA------YEQRW 463
            +   +S LYA       EQ W
Sbjct: 395 -EVSFISILYACSHSGLLEQGW 415



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 136/264 (51%), Gaps = 22/264 (8%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE--------------------RDLVAWNSVIN 217
           V++ N +V  YA  G  K++  +F++M E                    RD+++WNS+I+
Sbjct: 27  VYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMIS 86

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G+ SNG     L ++++M   G++ D  T++S+   CA+ G L+LG+  H+   K     
Sbjct: 87  GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFER 146

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            +N +N LLD YSKCG +  A RVF +M +RN VSW++++ G   +G+   A+ L ++ME
Sbjct: 147 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 206

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G     V    +L+AC+  G +D G      +K    +   +     ++D+  + G +
Sbjct: 207 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSM 265

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLG 421
           + A      M++  + + W T++G
Sbjct: 266 EGANSVFSTMVV-KDIISWNTMVG 288



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 34/194 (17%)

Query: 43  RKCITLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAH 97
           R    +L  CAS  +  + K++H + +R+G   +     +++  A+V L      +  A 
Sbjct: 295 RTMACILPACASLSALERGKEIHGYILRNGYSSD-----RHVANALVDLYVKCGVLGLAR 349

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
            +F  +   ++ +W  MI GY        A+  +++M  +GI+PD  ++  +L A S   
Sbjct: 350 LLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS--- 406

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNS------------LVHMYAAFGHVKDACKVFELMS 205
                   HS  +  G+     ++N             +V + +  G++  A K  E + 
Sbjct: 407 --------HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458

Query: 206 -ERDLVAWNSVING 218
              D   W +++ G
Sbjct: 459 IAPDATIWGALLCG 472



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           L+ FY+ CG +   +RVF  M K+N   W+ +V   A  G  KE++ LFK M
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 53


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 322/561 (57%), Gaps = 11/561 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           + VH F IR  +   +P+L  +L  A++ L   +  +   H +F  +++  I +WNT+I 
Sbjct: 322 RSVHGFVIRRAM---DPEL-DFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLIS 377

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG-FE 175
            +  +  P  A+ L+ +M   G+ PD+++    L A   ++  ++G Q H   I+ G F 
Sbjct: 378 IFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN 437

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
              FVQN+L+ MYA  G V  A K+FE + E+ LV WNS+I GF+ NG   EA+TLF +M
Sbjct: 438 D--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 495

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
               V+ D  T +S+  AC+ LG L  G+  H  +   GL  +  ++ AL D YSKCG +
Sbjct: 496 YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 555

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A  VF  M +R+ VSWS ++ G  ++G     + LF +M   G  P ++TF+ +L AC
Sbjct: 556 QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 615

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G V+EG  YF  M  E+G+ PK +HF CMVDLL RAG +  AY+ I ++  P N+ I
Sbjct: 616 SHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSI 674

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LL  C IH    I +     LL ++   +G Y LLSN+YA E  W    +VR  M  
Sbjct: 675 WGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKS 734

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + ++K PG+S +E+  +++ F  GD SH QT++I+  L      +  + Y    +N    
Sbjct: 735 KGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVG 794

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
             +  KE+ +  HSEK+AIAF ++NT PGT +R+ KNLRVC DCH   K+ SK+  REI+
Sbjct: 795 TSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREII 854

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           +RD +RFH F++G CSC DYW
Sbjct: 855 MRDLNRFHCFRNGSCSCNDYW 875



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 200/388 (51%), Gaps = 17/388 (4%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL-IYAIVSLSFPMSYAHNIFSHVQDP 106
           L + CA+S   L Q+HA     G+  + P   K +  YA + +      +  +F     P
Sbjct: 7   LFRRCATST-TLTQLHAHLFITGLHRHPPASTKLIESYAQIGI---FESSKRVFDTFPKP 62

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           + F W  +I+ Y        AV LY +M +    +     +P +LKA S   D+ +G + 
Sbjct: 63  DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H   I+ GFES   V+ SL+ MY     + DACK F+ M  RD+VAW+S++  F  NG+ 
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
           +E L +F +M SE VEPD  TM+S+  AC+ELG+L LGR  H YV +  +  N ++NN+L
Sbjct: 183 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSL 242

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +  Y K G + +A+R+F  +  R    W+ ++     +G  +EAL +F +M+     P +
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 346 VTFVGVLYACSHCGMVDEGFS----YFKRMKDEYGIMPKIEHFG-CMVDLLGRAGLVKQA 400
           VT VGVL AC+  G V EG S      +R  D     P+++  G  +++L    G ++  
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMD-----PELDFLGPALMELYADTGNLRDC 357

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           ++  +  +     + W TL+   T +G 
Sbjct: 358 HKVFET-IKEKTILSWNTLISIFTRNGQ 384


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 316/532 (59%), Gaps = 14/532 (2%)

Query: 96  AHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           A  +F  + +   ++ +WN M+  Y  +     A++LY +M    ++PD  TY  LL A 
Sbjct: 214 ARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSAC 270

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           S   DV +G   H   + +  E  V V N+LV MYA  G   +A  VF+ M +R +++W 
Sbjct: 271 SSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWT 330

Query: 214 SVINGFASNGKPNEALTLFREM-------ASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           ++I+ +       EA  LF++M       +S+ V+PD    V++ +ACA++ AL  G+  
Sbjct: 331 TIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMV 390

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLAVNGF 325
                  GLS +  V  A+++ Y KCG I  A+R+F  +  R  V  W+ ++   A  G 
Sbjct: 391 SEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ 450

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIMPKIEHF 384
             EAL+LF  ME+ G  P   +FV +L ACSH G+ D+G SYF  M  EY  +   I+HF
Sbjct: 451 SHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHF 510

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GC+ DLLGR G +K+A E+++ + + P+AV W +LL AC  H     A+   + LL+LEP
Sbjct: 511 GCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEP 570

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
           + +  YV LSN+YA  Q+W  V +VR+ M ++ VKK  G S +E+G  + +F  GD +HP
Sbjct: 571 RCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHP 630

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +  EI   LA++  ++K  GYVP T+ V   ++E+EKE  L  HSE++AIA  L++T  G
Sbjct: 631 RNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLG 690

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           TP+RV KNLRVC+DCH A KLISK+  R+IVVRD +RFH FKDG CSC+DYW
Sbjct: 691 TPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 170/347 (48%), Gaps = 14/347 (4%)

Query: 93  MSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           +S+A  +F+ ++   N+ +W+ M   +A   N   A+  +  M + GIK        +L 
Sbjct: 109 LSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILS 168

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL 209
           A S  A V+ G   HS    +GFES + V N+++ MY   G V++A KVF+ M E  RD+
Sbjct: 169 ACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDV 228

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN +++ +  N +  +A+ L++ M    + PD  T VSL SAC+    + LGR  H  
Sbjct: 229 VSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQ 285

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +    L  NV V NAL+  Y+KCG    A+ VF +M +R+ +SW+T++          EA
Sbjct: 286 IVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEA 345

Query: 330 LELFKEM---EIGG----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
             LF++M   E  G      P  + FV +L AC+    +++G           G+     
Sbjct: 346 CHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKA 404

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               +V+L G+ G +++A      +   P+  +W  ++      G S
Sbjct: 405 VGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQS 451



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 166/376 (44%), Gaps = 56/376 (14%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  ++  N+++W  ++  +A S      +    +M   G++PD  T+   L +   
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNS 214
              +R G + H + + +  E    V N+L++MY   G +  A +VF  M   R++++W+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +    A +G   EAL  FR M   G++     MV++ SAC+    +  GR  H+ +   G
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSG 190

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALEL 332
               + V NA++  Y +CG +  A++VF  M +  R+ VSW+ ++     N  GK+A++L
Sbjct: 191 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQL 250

Query: 333 FKEMEIGGFVPGEVTFVGVLYACS-----------------------------------H 357
           ++ M++    P +VT+V +L ACS                                    
Sbjct: 251 YQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 307

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--------- 408
           CG   E  + F +M+        I  +  ++    R  LV +A    Q ML         
Sbjct: 308 CGSHTEARAVFDKMEQR-----SIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 362

Query: 409 -MPPNAVIWRTLLGAC 423
            + P+A+ + T+L AC
Sbjct: 363 RVKPDALAFVTILNAC 378



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 16/328 (4%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MYA      DA   F+ + +R+L +W  ++  FA +G+  E L     M  +GV PD  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM- 305
            ++   +C +  +L  G R H  V    L  +  V+NALL+ Y KCG +  A+RVF +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           R RN +SWS +    A++G   EAL  F+ M + G    +   V +L ACS   +V +G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 366 SYFKRMKDE----YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
               RM        G   ++     ++ + GR G V++A +    M      V+   ++ 
Sbjct: 180 ----RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKT 481
           +  +H       I     +QL P       LLS   + E   L  + + + +V + ++K 
Sbjct: 236 STYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLG-RVLHKQIVNDELEKN 294

Query: 482 PGHSLVELGNRVFEFFMGDRSHPQTEEI 509
                V +GN +   +    SH +   +
Sbjct: 295 -----VIVGNALVSMYAKCGSHTEARAV 317


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 332/584 (56%), Gaps = 43/584 (7%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           K++HAF + +   + N  +G  L+    +   P      +F  +    I  WN MI GY 
Sbjct: 307 KEIHAFVLMNNDLIENSFVGCALVDMYCNCKQP-EKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 120 ESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            +     A+EL+ +M    G+ P++ T   +L A  +       E  HS  ++ GFE   
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDK 425

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +VQN+L+ MY+  G ++ A  +F  M+ +D+V+WN++I G+   G+ ++AL L  +M   
Sbjct: 426 YVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRG 485

Query: 239 GVE------------------PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
             E                  P+  T++++   CA L AL  G+  H Y  K  LS +V 
Sbjct: 486 QAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVA 545

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           V +AL+D Y+KCG +  ++ VF +M  RN ++W+ L++   ++G G+EAL+LF+ M   G
Sbjct: 546 VGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEG 605

Query: 341 -----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
                  P EVT++ +  + SH GMVDEG + F  MK ++GI P  +H+ C+VDLLGR+G
Sbjct: 606 DNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSG 665

Query: 396 LVKQAYEYIQNMLMPPN---AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
            +++AY  I+ M  P N      W +LLGAC IH +  I EIA   L  L+P       +
Sbjct: 666 QIEEAYNLIKTM--PSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPN------V 717

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
           L   Y  +Q  L      R M ++ V+K PG S +E G+ V +F  GD SHPQ++E+H  
Sbjct: 718 LD--YGTKQSMLG-----RKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEY 770

Query: 513 LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
           L  ++ ++K EGYVP T  V  ++ EEEKE  L  HSE++AIAF L+NT+PGT +RV KN
Sbjct: 771 LETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKN 830

Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LRVC DCH+A K ISK+  REI++RD  RFHHF++G CSC DYW
Sbjct: 831 LRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 174/380 (45%), Gaps = 26/380 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+HA   + G  L  P      +  +      +  A  +F  + + +  +WN+MI    
Sbjct: 105 KQLHAHVFKFGQAL--PTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAAC 162

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQTHSVAIRNGFESLV 178
                 LAV L+  M +  + P + T   +  A S L + + +G+Q H+  +RNG +   
Sbjct: 163 RFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRT 221

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           F  N+LV MYA  G V +A  +F++  ++DLV+WN++I+  + N +  EAL     M   
Sbjct: 222 FTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIA 297
           GV P+G T+ S+  AC+ L  L  G+  H +V     L +N  V  AL+D Y  C     
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEK 341

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACS 356
            + VF  M +R    W+ ++ G   N F  EA+ELF EM    G  P  VT   VL AC 
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACV 401

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFG---------CMVDLLGRAGLVKQAYEYIQNM 407
            C    E F       D+ GI   +  +G          ++D+  R G ++ A     +M
Sbjct: 402 RC----ESF------LDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSM 451

Query: 408 LMPPNAVIWRTLLGACTIHG 427
               + V W T++    + G
Sbjct: 452 -NRKDIVSWNTMITGYVVCG 470



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 3/256 (1%)

Query: 111 WNTMIRGYAESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           W + +R   +S++    A+  Y+ M  +G+ PD   +P +LKA + + D+ +G+Q H+  
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
            + G      V NSLV+MY   G +  A +VF+ ++ RD V+WNS+IN      +   A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAEL-GALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
            LFR M  E V P  +T+VS+  AC+ L   L LG++ H +V + G       NNAL+  
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTM 230

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y+K G +  A+ +F     ++ VSW+T++  L+ N   +EAL     M   G  P  VT 
Sbjct: 231 YAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTL 290

Query: 349 VGVLYACSHCGMVDEG 364
             VL ACSH  M+  G
Sbjct: 291 ASVLPACSHLEMLGCG 306


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 333/578 (57%), Gaps = 34/578 (5%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I++L  CA+S      K VH+ +I+      +  +N  L  Y      S    +  A  +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMY------SKCGDLDGALRV 308

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + N+ +W +MI GY        A++L  +M   G+K D      +L A ++   +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H     N  ES +FV N+L+ MYA  G ++ A  VF  M  +D+++WN++I   
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE- 427

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                               ++PD  TM  +  ACA L AL  G+  H Y+ + G S + 
Sbjct: 428 --------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V NAL+D Y KCG++  A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EV+F+ +LYACSH G++++G+ +F  MK+++ I PK+EH+ CMVDLL R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AYE+++ + + P+A IW  LL  C  +    +AE     + +LEP+++G YVLL+N+YA 
Sbjct: 588 AYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR-SHPQTEEIHAMLAEITK 518
            ++W  V+ +R  + K+ ++K PG S +E+  +V  F  G+  SHP ++ I ++L ++ +
Sbjct: 648 AEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRR 707

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EG+ P+T+    + +E +KE AL  HSEK+A+AF L+   P   +RV KNLRVC D
Sbjct: 708 KMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK   REIV+RD +RFHHFKDG+CSCR +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 182/382 (47%), Gaps = 46/382 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      + +Y +M   GI  D  T   +L   + 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  HS+AI++ FE  +   N+L+ MY+  G +  A +VFE M ER++V+W S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  +G+ + A+ L ++M  EGV+ D   + S+  ACA  G+L  G+  H Y+    +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
             N+ V NAL+D Y+KCG + AA  VF  M  ++ +SW+T+                   
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM------------------- 424

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVD 389
             IG   P   T   VL AC+         S  +R K+ +G + +  +         +VD
Sbjct: 425 --IGELKPDSRTMACVLPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           L  + G++  A   + +M+   + V W  ++    +HG+   AIA         +EP   
Sbjct: 476 LYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD-- 532

Query: 448 GDYVLLSNLYA------YEQRW 463
            +   +S LYA       EQ W
Sbjct: 533 -EVSFISILYACSHSGLLEQGW 553



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 196/437 (44%), Gaps = 75/437 (17%)

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
           FS ++G  ++ P L   +   I S   P+  +    +   D  +  +N  I  + +  + 
Sbjct: 24  FSSQNGCFIHKPSLKTKIFSPIFSSCIPIRISATP-TRTIDHQVTDYNAKILHFCQLGDL 82

Query: 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG----------- 173
             A+EL      S +  +T TY  +L+  + L     G++ HS+   N            
Sbjct: 83  ENAMELICMCQKSEL--ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKL 140

Query: 174 ----------------FESL----VFVQNSLVHMYAAFGHVKDACKVFELMSE------- 206
                           F+++    V++ N +V  YA  G  K++  +F++M E       
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKR 200

Query: 207 -------------RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                        RD+++WNS+I+G+ SNG     L ++++M   G++ D  T++S+   
Sbjct: 201 PESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA  G L+LG+  H+   K      +N +N LLD YSKCG +  A RVF +M +RN VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKR 370
           ++++ G   +G    A++L ++ME  G     V    +L+AC+  G +D G     Y K 
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 371 MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG------- 421
              E  +      F C  ++D+  + G ++ A      M++  + + W T++G       
Sbjct: 381 NNMESNL------FVCNALMDMYAKCGSMEAANSVFSTMVV-KDIISWNTMIGELKPDSR 433

Query: 422 --ACTIHGHSAIAEIAR 436
             AC +   ++++ + R
Sbjct: 434 TMACVLPACASLSALER 450


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 314/523 (60%), Gaps = 11/523 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +W TMI GY ++    +A +L+  M     + +  ++  +LK  + 
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTN 327

Query: 156 LADV-RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              +    E  +++ I++     V   N+++  +   G V  A +VF+ M E+D   W++
Sbjct: 328 CGRLDEASELFNAMPIKS-----VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           +I  +   G   +AL LFR M  EG+ P+  +++S+ S CA L  L  GR  H  + +  
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              +V V + LL  Y KCG +  A++VF     ++ V W++++ G A +G G EAL +F 
Sbjct: 443 FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFH 502

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M   G +P +VTFVGVL ACS+ G V +G   F  M+ +Y +  KIEH+ CMVDLLGRA
Sbjct: 503 DMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRA 562

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G + +A + I+ M M  +A+IW  LLGAC  H    +AE+A   LL LEPK++G ++LLS
Sbjct: 563 GKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLS 622

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS-HPQTEEIHAML 513
           N+YA + RW +V E+RR M   RV K PG S + +  +V +F  GD S HP+  EI+ +L
Sbjct: 623 NIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRIL 682

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             ++  L+  GY P    V  D++EEEK  +L YHSEK+A+A+ L+    G P+RV+KNL
Sbjct: 683 EWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNL 742

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH AIKLI+KV  REI++RD +RFHHFKDG CSCRDYW
Sbjct: 743 RVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 60/314 (19%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++D NI +WN+++ GY ++  P  A  ++ KM                     
Sbjct: 117 ARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS-------------------- 156

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                              E      N LV  Y   G + +A +VF+ M ER++V+W ++
Sbjct: 157 -------------------ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAM 197

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH--TYVWKV 273
           + G+   G  +EA TLF +M  + V           S    LG L    R      ++ +
Sbjct: 198 VRGYVKEGMISEAETLFWQMPEKNV----------VSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
               +V     ++  Y + G ++ A+ +F EM +RN VSW+T++ G   N     A +LF
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF 307

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
           + M        EV++  +L   ++CG +DE    F  M      +  +     M+   G+
Sbjct: 308 EVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMP-----IKSVVACNAMILCFGQ 358

Query: 394 AGLVKQAYEYIQNM 407
            G V +A +    M
Sbjct: 359 NGEVPKARQVFDQM 372



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 161/375 (42%), Gaps = 45/375 (12%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           + +  +NSL+  Y+  G ++ A  VF+ M ++++++WNS++ G+  N +P EA  +F +M
Sbjct: 96  NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM 155

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           +    E +  +   L S     G +   R     V+      NV    A++  Y K G+I
Sbjct: 156 S----ERNTISWNGLVSGYINNGMINEARE----VFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME----------IGGFVP-G 344
             A+ +F +M ++N VSW+ ++ GL   G   EA  LF  M           IGG+   G
Sbjct: 208 SEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 345 EVTFVGVLY-------ACSHCGMVDEGFSYFKRM---KDEYGIMPKIEHFGCMVDLLG-- 392
            +    +L+         S   M+  G+   +++   +  + +MP+         L G  
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMI-TGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
             G + +A E      MP  +V+    +  C   G +     AR    Q+  K  G +  
Sbjct: 327 NCGRLDEASELFN--AMPIKSVVACNAMILC--FGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 453 LSNLYAYEQRWLNVQEVRRTMVKERVKKT-PGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           +  +Y  +   L+  E+ R M +E ++   P  SL+     V     G  +     EIHA
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFP--SLIS----VLSVCAGLANLDHGREIHA 436

Query: 512 MLAEITKKLKLEGYV 526
            L  +  +  L+ YV
Sbjct: 437 QL--VRSQFDLDVYV 449



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIF 100
           I++L VCA  ++    +++HA  +R     +  DL  Y+   ++S+      ++ A  +F
Sbjct: 416 ISVLSVCAGLANLDHGREIHAQLVR-----SQFDLDVYVASVLLSMYIKCGNLAKAKQVF 470

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
                 ++  WN++I GYA+    + A+ ++  MH SGI PD  T+  +L A S   +V+
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530

Query: 161 MG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVI 216
            G E  +S+  +   E  +     +V +    G + +A  + E M  E D + W +++
Sbjct: 531 KGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/513 (40%), Positives = 307/513 (59%), Gaps = 6/513 (1%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN+MI  Y +    L A+ LY  M   G + D  T   +L   S + D+  G Q H+ A
Sbjct: 208 SWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKA 267

Query: 170 IRNGFESLVFVQNSLVHMYAAFGH-VKDACKVFELMSERDLVAWNSVINGFASNGKPN-E 227
           I+ GF     V + L+ MYA  G  + ++ KVFE +   DLV WN++I+G++ N + + E
Sbjct: 268 IKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVE 327

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALL 286
           AL  FR+M   G  PD  + V   SAC+ L + + G++ H    K  + S+ ++VNNAL+
Sbjct: 328 ALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALV 387

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             YSKCG +  A+++F+ M + N V+ ++++ G A +G G E+L LF++M      P  +
Sbjct: 388 TMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSI 447

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           T V +L AC+H G V+EG  YF  MKD +GI P+ EH+ CM+DLLGRAG + +A   I  
Sbjct: 448 TLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDT 507

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M   P +  W  LLGAC  +G+  +AE A +  LQLEP ++  Y++L+++Y+  ++W   
Sbjct: 508 MPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEA 567

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             +R+ M    ++K PG S +EL  RV  F   D SHP+ +EIH  L E+  K+K  GYV
Sbjct: 568 ARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYV 627

Query: 527 PRTENVFA---DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAI 583
           P     F    +  E+EKE  L++HSEK+A+AF L+ T  G P+ VVKNLR+C DCH AI
Sbjct: 628 PDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAI 687

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K +S +  R+I VRD  RFH F+DG CSC DYW
Sbjct: 688 KFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 182/340 (53%), Gaps = 15/340 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           AH++F  +  P++ ++NT+I  YA+  + L A+ L+ +M   G+  D  T+  ++ A   
Sbjct: 93  AHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCN 152

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWN 213
              V +  Q HS+A  +GF+S V V+NSL+  Y+  G +++A  VF  M E  RD V+WN
Sbjct: 153 --HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           S+I  +  + +  +AL L+R+M   G E D +T+ S+ +  + +  L+ G + H    K 
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT 270

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQR-VFREMRKRNAVSWSTLVVGLAVNG-FGKEALE 331
           G + N +V + L+D Y+KCG  ++  R VF E+   + V W+T++ G + N     EALE
Sbjct: 271 GFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALE 330

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK-RMKDEYGIMP--KIEHFGCMV 388
            F++M+  G+ P + +FV  + ACS+     +G  +    MK E   +P  +I     +V
Sbjct: 331 CFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSE---IPSNQISVNNALV 387

Query: 389 DLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHG 427
            +  + G ++ A +  Q   MP  N V   +++     HG
Sbjct: 388 TMYSKCGNLQDARKLFQR--MPQHNTVTLNSIIAGYAQHG 425



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 14/275 (5%)

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           A     E  VF  N+L+  YA    +  A  +F+ + + DLV++N++IN +A  G    A
Sbjct: 65  AFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSA 124

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           L+LF EM   G+  DG+T   + +AC     + L R+ H+  +  G    V+V N+LL +
Sbjct: 125 LSLFGEMREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTY 182

Query: 289 YSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           YSK GI+  A+ VF  M +  R+ VSW++++V    +  G +AL L+++M   GF     
Sbjct: 183 YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMF 242

Query: 347 TFVGVLYACSHCGMVDEGFSYF-KRMKDEYGIMPKIEHFGC-MVDLLGRAGLVKQAYEYI 404
           T   VL   S    +  G  +  K +K  +    K  H G  ++D+  + G        +
Sbjct: 243 TLASVLTTFSCVEDLSGGLQFHAKAIKTGFN---KNRHVGSGLIDMYAKCGAGMSESRKV 299

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
              +   + V+W T+     I G+S   E++   L
Sbjct: 300 FEEICGSDLVVWNTM-----ISGYSQNKELSVEAL 329



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 32/146 (21%)

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           +  +C     L  G+  HT   K  +  +  ++N  +  YSKC ++  A   F +  + N
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 310 A-------------------------------VSWSTLVVGLAVNGFGKEALELFKEMEI 338
                                           VS++TL+   A  G    AL LF EM  
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 339 GGFVPGEVTFVGVLYA-CSHCGMVDE 363
            G V    TF GV+ A C+H G++ +
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQ 159


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/521 (39%), Positives = 313/521 (60%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D +  TW TM+ G  ++     A++++ +M   G+  D +T+  +L A   
Sbjct: 234 ARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGA 293

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           LA    G+Q H+  IR  ++  +FV ++LV MY+    ++ A  VF  M+ +++++W ++
Sbjct: 294 LAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAM 353

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  NG   EA+ +F EM ++G++P+ +T+ S+ S+CA L +L  G + H      GL
Sbjct: 354 IVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGL 413

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
              + V++AL+  Y KCG I  A R+F EM   + VS++ LV G A  G  KE ++LF++
Sbjct: 414 RPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEK 473

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M + G  P  VTF+GVL ACS  G+V++G SYF  M+ ++GI+   +H+ CM+DL  R+G
Sbjct: 474 MLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSG 533

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            +K+A E+I+ M   P+A+ W TLL AC + G   I + A   LL+ +P++   YVLL +
Sbjct: 534 RLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCS 593

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           ++A +  W  V  +RR M   +VKK PG S ++  NRV  F   D+SHP +  I+  L  
Sbjct: 594 MHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQW 653

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +  K+  EGY P   +V  D+ + EK   LS HSEK+AIAF L+      P+RVVKNLRV
Sbjct: 654 LNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRV 713

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH A K ISK+  R+I+VRD  RFH F +G CSC D+W
Sbjct: 714 CVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 172/384 (44%), Gaps = 70/384 (18%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAE--------------------SANPLLA----- 127
           +  A  +F  + DPN+FT N ++   A                     S N L+A     
Sbjct: 61  LPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGA 120

Query: 128 -----------VELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
                        L  +  V G  ++P   T   ++ A S L D  +G Q H   +R GF
Sbjct: 121 GAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGF 180

Query: 175 ESLVFVQNSLVHMYAAFGHVKDA------------------------CK-------VFEL 203
            +  F  + LV MYA  G + DA                        CK       VFE 
Sbjct: 181 GAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEA 240

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M +RD + W +++ G   NG  +EAL +FR M +EGV  D YT  S+ +AC  L A   G
Sbjct: 241 MVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEG 300

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           ++ H Y  +     N+ V +AL+D YSKC  I  A+ VFR M  +N +SW+ ++VG   N
Sbjct: 301 KQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQN 360

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
           G G+EA+ +F EM+  G  P + T   V+ +C++   ++EG + F  M    G+ P I  
Sbjct: 361 GCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEG-AQFHCMALVSGLRPYITV 419

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNM 407
              +V L G+ G ++ A+     M
Sbjct: 420 SSALVTLYGKCGSIEDAHRLFDEM 443



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 44/224 (19%)

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
           P  Y +  L +A A  G L L RR    ++      N+   NALL   +   ++    R+
Sbjct: 43  PPTYVLNHLLTAYARSGRLPLARR----LFDAMPDPNLFTRNALLSALAHARLLPDMDRL 98

Query: 302 FREMRKRNAVSWSTLVVGLA----VNGFGKEALELFKEMEI--GGFV-PGEVTFVGVLYA 354
           F  M +R+AVS++ L+ G +              L +E  +  G  V P  +T  G++ A
Sbjct: 99  FASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMA 158

Query: 355 CS-----------HCGMVDEGFSYF--------------------KRMKDEYGIMPKIEH 383
            S           HC ++  GF  +                    KR+ DE  ++  +  
Sbjct: 159 ASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEM-VVKNVVM 217

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           +  M+  L R  +V++A    + M+   +++ W T++   T +G
Sbjct: 218 YNTMITGLLRCKMVEEARGVFEAMV-DRDSITWTTMVTGLTQNG 260


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 284/449 (63%), Gaps = 13/449 (2%)

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE- 238
           V NSLVH YA+ G    A  VF  + +R LV+WN+ ++  A NG    AL LFREM  + 
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160

Query: 239 -GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-----VGLSDNVNVNNALLDFYSKC 292
             + PD YT+ S+  ACA  GAL+LG  AH  + +       +S +V +NN+L+D Y KC
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKC 220

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGV 351
           G +  A++VF  M +R+  SW+ +V+ LA +G  +++L+LF  M  + G VP  +TFV V
Sbjct: 221 GAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAV 280

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
           L AC+H G+VDEG  YF  M  E+GI P+IEH+GCMVD+L RAG +++A + +  M   P
Sbjct: 281 LSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRP 340

Query: 412 NAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
           +++IWR+LL AC     G      +A+  L   +   SG YVLLS +YA  QRW +V  +
Sbjct: 341 DSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMI 400

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           R+ M +E  KK PG S +E+   V +F  GD SHPQ+EEI+  L EI ++L   GY P  
Sbjct: 401 RQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPDL 460

Query: 530 EN--VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLIS 587
               + ADI+   K   L  HSE++AI+F L+N  PG P+R++KNLRVC DCH   KLIS
Sbjct: 461 SEAPMVADIDRT-KGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLIS 519

Query: 588 KVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K+Y+ EI+VRDR RFHHFKDG CSC+DYW
Sbjct: 520 KLYNVEIIVRDRIRFHHFKDGSCSCKDYW 548


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/523 (41%), Positives = 318/523 (60%), Gaps = 1/523 (0%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAI 153
           YA  +F  +   N  TW+ +I G+   +    A  L+  M   G+   + T     L+A 
Sbjct: 176 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRAC 235

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L  +RMGEQ H++  ++G  + +   NSL+ MYA  G +  A  +F+ M+ +D V+++
Sbjct: 236 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 295

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++++G+  NG+  EA  +F++M +  VEPD  TMVSL  AC+ L AL  GR +H  V   
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           GL+   ++ NAL+D Y+KCG I  +++VF  M  R+ VSW+T++ G  ++G GKEA  LF
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            EM   GF P  VTF+ +L ACSH G+V EG  +F  M   YG+ P++EH+ CMVDLL R
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            G + +AYE+IQ+M +  +  +W  LLGAC ++ +  + +     + +L P+ +G++VLL
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 535

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   R+    EVR     +  KK+PG S +E+   +  F  GD+SHPQ+ EI+  L
Sbjct: 536 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 595

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             I   +K  GY P T  V  D+EEEEKE AL  HSEK+AIA+ +++ +    + V KNL
Sbjct: 596 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 655

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH  IK IS V  R I+VRD +RFHHFK+G CSC D+W
Sbjct: 656 RVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 14/282 (4%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198
           + P+ +T+PF LKA S LAD   G   H  AI  G ++ +FV  +L+ MY     + DA 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 199 KVFELMSERDLVAWNSVINGFASNGKPNEALT--LFREMASEGVEPDGYTMVSLFSACAE 256
            +F  M  RDLVAWN+++ G+A +G  + A+   L  +M    + P+  T+V+L    A+
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 257 LGALALGRRAHTYVW----------KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            GALA G   H Y            K  L+D V +  ALLD Y+KCG ++ A+RVF  M 
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 185

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGF 365
            RN V+WS L+ G  +     +A  LFK M   G       +    L AC+    +  G 
Sbjct: 186 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG- 244

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
                +  + G+   +     ++ +  +AGL+ QA      M
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 166/347 (47%), Gaps = 19/347 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVE--LYSKMHVSGIKPDTHTYPFLLKAI 153
           A +IF+ +   ++  WN M+ GYA       AV   L  +M +  ++P+  T   LL  +
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 154 SKLADVRMGEQTHSVAIR----------NGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
           ++   +  G   H+  IR          +     V +  +L+ MYA  G +  A +VF+ 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEG---VEPDGYTMVSLFSACAELGAL 260
           M  R+ V W+++I GF    +  +A  LF+ M ++G   + P   ++ S   ACA L  L
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHL 241

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
            +G + H  + K G+  ++   N+LL  Y+K G+I  A  +F EM  ++ VS+S LV G 
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
             NG  +EA  +FK+M+     P   T V ++ ACSH   +  G      +    G+  +
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASE 360

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                 ++D+  + G +  + + + NM+   + V W T++    IHG
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQ-VFNMMPSRDIVSWNTMIAGYGIHG 406


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/618 (39%), Positives = 351/618 (56%), Gaps = 26/618 (4%)

Query: 8   SKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSI 67
           SKQ  Y E   L    + +  S+          +++ C  L    A+S     Q+HA  I
Sbjct: 30  SKQRQYREALTL---YRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAAS-----QLHAHVI 81

Query: 68  RHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPL 125
           R G    +P     LI  YA  SL     +A  +F  + +P I  +N MI GY+ ++ PL
Sbjct: 82  RTGSQ-PDPYTRSSLINTYAKCSLHH---HARKVFDEMPNPTI-CYNAMISGYSFNSKPL 136

Query: 126 LAVELYSKMHV---SGIKPDTH----TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
            AV L+ KM      G+  D +    T   L+   S    + +G   H   +R GF + +
Sbjct: 137 HAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDL 196

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V NSLV MY   G V+ A KVF+ M  RDL+ WN++I+G+A NG     L ++ EM   
Sbjct: 197 AVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLS 256

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV  D  T++ + SACA LGA  +GR     + + G   N  + NAL++ Y++CG +  A
Sbjct: 257 GVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRA 316

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           + VF    +++ VSW+ ++ G  ++G G+ ALELF EM      P +  FV VL ACSH 
Sbjct: 317 REVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHA 376

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+ D G  YFK M+ +YG+ P  EH+ C+VDLLGRAG +++A   I++M + P+  +W  
Sbjct: 377 GLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGA 436

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGAC IH ++ IAE+A   +++LEP + G YVLLSN+Y        V  VR  M + ++
Sbjct: 437 LLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKL 496

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K PG+S VE   ++  F+ GD SHPQT++I+ ML E+   +K E + P   N       
Sbjct: 497 RKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVK-EVHPP---NEKCQGRS 552

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EE       HSEK+AIAF L+NT  GT + V+KNLRVC DCHL IKL+SK+ +R+ +VRD
Sbjct: 553 EELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRD 612

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFHHF+DG CSC+DYW
Sbjct: 613 ATRFHHFRDGICSCKDYW 630



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           WN  +R  ++      A+ LY  M  S   P+T T+PFLLK+ + L+      Q H+  I
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           R G +   + ++SL++ YA       A KVF+ M     + +N++I+G++ N KP  A+ 
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHAVC 140

Query: 231 LFREMASE---GVEPD----GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
           LFR+M  E   G++ D      T++SL S C+    L +G   H    + G   ++ V N
Sbjct: 141 LFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVAN 200

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           +L+  Y KCG +  A++VF EM  R+ ++W+ ++ G A NG  +  LE++ EM++ G   
Sbjct: 201 SLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSA 260

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-YGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
             VT +GV+ AC++ G    G    + ++   +G  P + +   +V++  R G + +A E
Sbjct: 261 DAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTRARE 318



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 20/232 (8%)

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
            AWN+ +   +   +  EALTL+R M      P+ +T   L  +CA L       + H +
Sbjct: 20  TAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAH 79

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V + G   +    ++L++ Y+KC +   A++VF EM     + ++ ++ G + N     A
Sbjct: 80  VIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEM-PNPTICYNAMISGYSFNSKPLHA 138

Query: 330 LELFKEM----EIGGFVPGEVTFVGVLYACSHC--------GMVDEGFSYFKRMKDEYGI 377
           + LF++M    E G  V   V  V +L   S C        G+   G          +G 
Sbjct: 139 VCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCV------RFGF 192

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           +  +     +V +  + G V+ A +    ML+  + + W  ++     +GH+
Sbjct: 193 VTDLAVANSLVTMYVKCGEVELARKVFDEMLV-RDLITWNAMISGYAQNGHA 243


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 319/523 (60%), Gaps = 1/523 (0%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAI 153
           YA  +F  +   N  TW+ +I G+   +    A  L+  M   G+   + T     L+A 
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRAC 350

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L  +RMGEQ H++  ++G  + +   NSL+ MYA  G +  A  +F+ M+ +D V+++
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++++G+  NG+  EA  +F++M +  VEPD  TMVSL  AC+ L AL  GR +H  V   
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 470

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           GL+   ++ NAL+D Y+KCG I  +++VF  M  R+ VSW+T++ G  ++G GKEA  LF
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            EM   GF P  VTF+ +L ACSH G+V EG  +F  M+  YG+ P++EH+ CMVDLL R
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSR 590

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            G + +AYE+IQ+M +  +  +W  LLGAC ++ +  + +     + +L P+ +G++VLL
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   R+    EVR     +  KK+PG S +E+   +  F  GD+SHPQ+ EI+  L
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             I   +K  GY P T  V  D+EEEEKE AL  HSEK+AIA+ +++ +    + V KNL
Sbjct: 711 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 770

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH  IK IS +  R I+VRD +RFHHFK+G CSC D+W
Sbjct: 771 RVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 16/330 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLA--VELYSKMHVSGIKPDTHTYPFLL 150
           +S AH++F  +  P++ T+N +IR Y+ S+    A  + LY +M    + P+ +T+PF L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           KA S LAD   G   H  AI  G ++ +FV  +L+ MY     + DA  +F  M  RDLV
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 211 AWNSVINGFASNGKPNEALT--LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           AWN+++ G+A +G  + A+   L  +M    + P+  T+V+L    A+ GALA G   H 
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252

Query: 269 YVW----------KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           Y            K  L+D V +  ALLD Y+KCG ++ A+RVF  M  RN V+WS L+ 
Sbjct: 253 YRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312

Query: 319 GLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           G  +     +A  LFK M   G       +    L AC+    +  G      +  + G+
Sbjct: 313 GFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG-EQLHALLAKSGV 371

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
              +     ++ +  +AGL+ QA      M
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 316/525 (60%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLK 151
           M YA  +F  + D +I  WN MI GY+ +A    +     KM   G + PD  T   LL 
Sbjct: 278 MDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLP 337

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             ++L  + +G+  H  AIRNGF   + ++ +LV MY   G +K A  +F  M+ER+L++
Sbjct: 338 PCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLIS 397

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++I  +  NG+  +A+TLF+++ ++ ++PD  T+ S+  A AEL +L    + H YV 
Sbjct: 398 WNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVT 457

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+ L  N  V+N+++  Y KCG ++ A+ +F  M  ++ +SW+T+++  A++GFG+ ++E
Sbjct: 458 KLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIE 517

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF EM   GF P   TFV +L +CS  G+V+EG+ YF  MK +Y I P IEH+GC++DL+
Sbjct: 518 LFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLI 577

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GR G +  A  +I+ M + P A IW +LL A    G   +AEIA   +L LE  ++G YV
Sbjct: 578 GRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYV 637

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+YA   RW +V+ ++  M KE ++K+ G S+V+L ++ F F   DRS  +   ++ 
Sbjct: 638 LLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYD 697

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
           +L  I+KK+  + YV           E+++ ++   HS ++AI F L++T  G PV V K
Sbjct: 698 VLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRK 757

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           N+R+C  CH   K IS+   REI+VRD   FHHF  GHCSC DYW
Sbjct: 758 NIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 188/341 (55%), Gaps = 3/341 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A ++F +++  + F WN MIRG+ ++     AV+ Y +M   G++ D  TYPF++KA
Sbjct: 76  MKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKA 135

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
              L D+  GE+ H   I++G +  +++ NSL+ MYA  G ++ A  VF  M  RDLV+W
Sbjct: 136 CGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSW 195

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           NS+I+G+ S G    +L+ FREM + G++ D ++++ +  AC+  G L  G+  H  + +
Sbjct: 196 NSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMR 255

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             L  +V V  +L+D Y+KCG +  A+R+F ++  ++ V+W+ ++ G ++N    E+   
Sbjct: 256 SRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAY 315

Query: 333 FKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
            ++M+ GG + P  +T + +L  C+    +  G S         G +P +     +VD+ 
Sbjct: 316 VRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHG-FAIRNGFLPHLVLETALVDMY 374

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           G  G +K A E +   +   N + W  ++ + T +G +  A
Sbjct: 375 GECGKLKPA-ECLFGQMNERNLISWNAMIASYTKNGENRKA 414



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 9/272 (3%)

Query: 188 YAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247
           Y   G++K+A  +FE M + D   WN +I GF  NG   +A+  +  M   GV  D +T 
Sbjct: 70  YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTY 129

Query: 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK 307
             +  AC  L  LA G R H  V K GL  ++ + N+L+  Y+K G I +A+ VFREM  
Sbjct: 130 PFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPV 189

Query: 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG--- 364
           R+ VSW++++ G    G G  +L  F+EM+  G      + +G+L ACS  G +  G   
Sbjct: 190 RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEI 249

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
                R + E  +M +      +VD+  + G +  A E + + +   + V W  ++G  +
Sbjct: 250 HCQMMRSRLELDVMVQTS----LVDMYAKCGRMDYA-ERLFDQITDKSIVAWNAMIGGYS 304

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
           ++  S     A    +Q   K   D++ + NL
Sbjct: 305 LNAQS-FESFAYVRKMQEGGKLHPDWITMINL 335



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           L  Y + G +  A  +F  MR+ +   W+ ++ G   NG   +A++ +  ME GG     
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 346 VTFVGVLYACSHCGMVDEG 364
            T+  V+ AC     + EG
Sbjct: 127 FTYPFVIKACGGLYDLAEG 145


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 308/529 (58%), Gaps = 6/529 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A ++F      N+F+W  M+  +A + + + A+ L   M + GI P++ T+  LL A
Sbjct: 108 LQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGA 167

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
           ++ L+ +  G   H      GF + +FV N L++MYA    + DAC VFE ++ R ++AW
Sbjct: 168 VAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAW 227

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            +++  +A NG   +AL +F  M  +GVEP   T V++   CA++    +GR  H  +  
Sbjct: 228 TALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVI-D 286

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                NV V NAL++ Y KC     A++VF  M++++ ++W++++     NG+G +ALE+
Sbjct: 287 ARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEI 346

Query: 333 FKEME-----IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           +K M+     I G    ++TF+GVL+ACSH G+V +    +  M  +YG  P     GC+
Sbjct: 347 YKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCL 406

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
           +DLLGRAG + +A E+I +M   P+  IW  LLGAC  H     A  A   ++ L P  S
Sbjct: 407 IDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDS 466

Query: 448 GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTE 507
           G YV LSNLYA  +RW ++  +R+ M +  V K  G S +E+G  + EF  GD SHP+  
Sbjct: 467 GSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKR 526

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
           EI+  L  I   ++  GYVP  + V  +   E KE    +HSE++AIAF ++++  GT +
Sbjct: 527 EIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTEL 586

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           R++KNLRVC DCH A K+ISK   R+I+VRD +RFH F++G CSC DYW
Sbjct: 587 RIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 3/230 (1%)

Query: 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186
           AV+L     VS   P      + L+     A +  G++ H   +  GF+S  ++ N LV 
Sbjct: 44  AVQLLEDRSVS---PSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVE 100

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY   G ++ A  VF +   R++ +W  ++  FA NG   +AL L   M  EG+ P+  T
Sbjct: 101 MYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSIT 160

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
            + L  A A L  L  GR  H  +   G   ++ V N L++ Y+KC  +  A  VF  + 
Sbjct: 161 FIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLT 220

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            R+ ++W+ LV   A+NGF ++AL++F  M + G  P EVTFV V+  C+
Sbjct: 221 SRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCA 270



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           +    V P    +      C    A+A G+R H ++   G   +  + N L++ Y KCG 
Sbjct: 48  LEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGS 107

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           + AA+ VF    +RN  SW+ +V   A NG   +AL L + M++ G  P  +TF+ +L A
Sbjct: 108 LQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGA 167

Query: 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
            +    +D G +  +R+    G +  I    C++++  +   +  A    ++ L   + +
Sbjct: 168 VAALSWLDRGRALHRRIAC-CGFLADIFVANCLINMYAKCRSLADACSVFES-LTSRSVI 225

Query: 415 IWRTLLGACTIHG--HSAIAEIARSTLLQLEP 444
            W  L+ A  ++G    A+      TL  +EP
Sbjct: 226 AWTALVAAYALNGFFRDALKVFLLMTLDGVEP 257


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/521 (38%), Positives = 312/521 (59%), Gaps = 5/521 (0%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF--LLKAISKL 156
           +F  + + +  ++N +I  Y+++     ++  + +M   G   D   +PF  +L   + L
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF--DRRNFPFATMLSIAANL 364

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + ++MG Q H  A+    +S++ V NSLV MYA     ++A  +F+ + +R  V+W ++I
Sbjct: 365 SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
           +G+   G     L LF +M    +  D  T  ++  A A   +L LG++ H ++ + G  
Sbjct: 425 SGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484

Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
           +NV   + L+D Y+KCG I  A +VF EM  RNAVSW+ L+   A NG G+ A+  F +M
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
              G  P  V+ +GVL ACSHCG V++G  YF+ M   YGI PK +H+ CM+DLLGR G 
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604

Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP-KHSGDYVLLSN 455
             +A + +  M   P+ ++W ++L AC IH + ++AE A   L  +E  + +  YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA    W  V++V++ M +  +KK P +S VE+ +++  F   D++HP  +EI   + E
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINE 724

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           +T +++ EGY P T +V  D++E+ K ++L YHSE++A+AF L++T  G P+ V+KNLR 
Sbjct: 725 LTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRA 784

Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           C DCH AIKLISK+  REI VRD SRFHHF +G CSC DYW
Sbjct: 785 CRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 190/407 (46%), Gaps = 16/407 (3%)

Query: 47  TLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF-----PMSYAHNI 99
           TLL  C  A  ++ + QVHAF+++ G      D   +L  + V L        +  A  +
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGF-----DTNPFLTVSNVLLKSYCEVRRLDLACVL 206

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + +  T+NT+I GY +      ++ L+ KM  SG +P   T+  +LKA+  L D 
Sbjct: 207 FEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDF 266

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
            +G+Q H++++  GF     V N ++  Y+    V +   +F+ M E D V++N VI+ +
Sbjct: 267 ALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSY 326

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           +   +   +L  FREM   G +   +   ++ S  A L +L +GR+ H           +
Sbjct: 327 SQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL 386

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V N+L+D Y+KC +   A+ +F+ + +R  VSW+ L+ G    G     L+LF +M   
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGS 446

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
                + TF  VL A +    +  G           G +  +     +VD+  + G +K 
Sbjct: 447 NLRADQSTFATVLKASASFASLLLG-KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP 444
           A +  + M    NAV W  L+ A   +  G +AI   A+     L+P
Sbjct: 506 AVQVFEEM-PDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQP 551



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM--HVSGIKPDTHTYPFLL 150
           +S A ++F  + D  + TW  ++  YA +++   A +L+ +M    S   PD  T+  LL
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVF--VQNSLVHMYAAFGHVKDACKVFELMSERD 208
              +         Q H+ A++ GF++  F  V N L+  Y     +  AC +FE + E+D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
            V +N++I G+  +G   E++ LF +M   G +P  +T   +  A   L   ALG++ H 
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
                G S + +V N +LDFYSK   ++  + +F EM + + VS++ ++   +     + 
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-CM 387
           +L  F+EM+  GF      F  +L   ++   +  G       +        I H G  +
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLATADSILHVGNSL 392

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           VD+  +  + ++A E I   L     V W  L+  
Sbjct: 393 VDMYAKCEMFEEA-ELIFKSLPQRTTVSWTALISG 426



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 4/177 (2%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM--ASEG 239
           N+++  +   G V  A  +F+ M +R +V W  ++  +A N   +EA  LFR+M  +S  
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN--VNVNNALLDFYSKCGIIIA 297
             PD  T  +L   C +        + H +  K+G   N  + V+N LL  Y +   +  
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           A  +F E+ ++++V+++TL+ G   +G   E++ LF +M   G  P + TF GVL A
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM- 336
           N    N ++  + K G + +A+ +F  M  R  V+W+ L+   A N    EA +LF++M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 337 -EIGGFVPGEVTFVGVLYACS 356
                 +P  VTF  +L  C+
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCN 158


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/486 (41%), Positives = 303/486 (62%), Gaps = 9/486 (1%)

Query: 135 HVSGIKPDTHTYPFLLKA-ISKLADVRMGEQTHSVAIRN---GFESLVFVQNSLVHMYAA 190
           H   IK    TYP L+ + +S  A     +  H +       GF+  +   N ++     
Sbjct: 82  HAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFD--LITANLIIASLMK 139

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G    A +VF  M  RD+V WNS+I G   N +  EAL  FREM +  VEPDG+T  S+
Sbjct: 140 VGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASV 199

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            + CA LG+       H  + +  +  N  +++AL+D YSKCG I  A++VF  ++  + 
Sbjct: 200 INGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDV 259

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
             W++++ GLA++G   +A+ +F +ME+    P  +TF+G+L ACSHCG+V++G  YF  
Sbjct: 260 SVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDL 319

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430
           M+  Y I P++EH+G MVDLLGRAGLV++AY  I+ M M P+ VIWR LL AC    +  
Sbjct: 320 MRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPE 379

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG 490
           + E+A + +  L   +SGDY+LLSN+Y   ++W + + VR  M ++ V+K  G S VELG
Sbjct: 380 LGEVAIAKISHL---NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELG 436

Query: 491 NRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSE 550
             + +F  GDRSHP+T  I+ +L  + ++ KLEG++P T+ V  D+ +EE+E+ L+ HSE
Sbjct: 437 GVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSE 496

Query: 551 KIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHC 610
           K+A+A++++ T+PGT +RV KNLR C DCH  +K++S++ SR I+VRDR RFH F+ G C
Sbjct: 497 KLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLC 556

Query: 611 SCRDYW 616
           SCRDYW
Sbjct: 557 SCRDYW 562



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 2/226 (0%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
            +A  +F  +   ++ TWN+MI G   +     A+  + +M  S ++PD  T+  ++   
Sbjct: 144 DFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGC 203

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           ++L      E  H + I    +    + ++L+ +Y+  G +  A KVF  +   D+  WN
Sbjct: 204 ARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWN 263

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK- 272
           S+ING A +G   +A+ +F +M  E V PD  T + + +AC+  G +  GRR    + + 
Sbjct: 264 SMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRH 323

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
             +   +    A++D   + G++  A  + + M  + + V W  L+
Sbjct: 324 YSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 369


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 325/510 (63%), Gaps = 2/510 (0%)

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
           F  +++ R  A    P  A+  Y ++  + +   +  +    KA + L+ +R G   H+ 
Sbjct: 75  FLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAH 134

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           ++  GF S  FVQ +LV +Y+  G +  A K+F+ + +R +VAWN++I+G+  NG    A
Sbjct: 135 SVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERA 194

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + ++REM    V PD  T V+  SACA+ GAL LGR     +    +  +V + +AL++ 
Sbjct: 195 IEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNM 254

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y++CG++  A+  F  +++RN V+W++++ G  ++G G EA++LF  M + G  P +VTF
Sbjct: 255 YARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTF 314

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           V VL AC+H G+V+EG S F  MK  YG++P+ EH+  MVD+ GRAGL+  A ++I++ +
Sbjct: 315 VAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSI 374

Query: 409 -MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
              P   +W  +LGAC +H +  +       L+ LEP++    VLLSN+YA   +  +V+
Sbjct: 375 PGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVE 434

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
           +VR  M+K R+KK  G+SL+ELG     F MG++SH QT EI+  L E+  ++   GYVP
Sbjct: 435 KVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVP 494

Query: 528 RTENVFADIEEEEKEDALSYHSEKIAIAF-MLVNTAPGTPVRVVKNLRVCADCHLAIKLI 586
            T++V  ++EEEE+E AL YHSEK+A+A+ +++++   TP+RV+KNLR+C DCHLAIK +
Sbjct: 495 ETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFM 554

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           S V SREI+VRD+ RFHHFKDG CSC +YW
Sbjct: 555 SSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/523 (41%), Positives = 318/523 (60%), Gaps = 1/523 (0%)

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAI 153
           YA  +F  +   N  TW+ +I G+   +    A  L+  M   G+   + T     L+A 
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRAC 350

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           + L  +RMGEQ H++  ++G  + +   NSL+ MYA  G +  A  +F+ M+ +D V+++
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           ++++G+  NG+  EA  +F++M +  VEPD  TMVSL  AC+ L AL  GR +H  V   
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 470

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           GL+   ++ NAL+D Y+KCG I  +++VF  M  R+ VSW+T++ G  ++G GKEA  LF
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
            EM   GF P  VTF+ +L ACSH G+V EG  +F  M   YG+ P++EH+ CMVDLL R
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 590

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
            G + +AYE+IQ+M +  +  +W  LLGAC ++ +  + +     + +L P+ +G++VLL
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650

Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
           SN+Y+   R+    EVR     +  KK+PG S +E+   +  F  GD+SHPQ+ EI+  L
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYREL 710

Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
             I   +K  GY P T  V  D+EEEEKE AL  HSEK+AIA+ +++ +    + V KNL
Sbjct: 711 DNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNL 770

Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RVC DCH  IK IS V  R I+VRD +RFHHFK+G CSC D+W
Sbjct: 771 RVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 16/330 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLA--VELYSKMHVSGIKPDTHTYPFLL 150
           +S AH++F  +  P++ T+N +IR Y+ S+    A  + LY +M    + P+ +T+PF L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
           KA S LAD   G   H  AI  G ++ +FV  +L+ MY     + DA  +F  M  RDLV
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 211 AWNSVINGFASNGKPNEALT--LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           AWN+++ G+A +G  + A+   L  +M    + P+  T+V+L    A+ GALA G   H 
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252

Query: 269 YVW----------KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318
           Y            K  L+D V +  ALLD Y+KCG ++ A+RVF  M  RN V+WS L+ 
Sbjct: 253 YCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312

Query: 319 GLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
           G  +     +A  LFK M   G       +    L AC+    +  G      +  + G+
Sbjct: 313 GFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG-EQLHALLAKSGV 371

Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
              +     ++ +  +AGL+ QA      M
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 316/548 (57%), Gaps = 32/548 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F+ +   N  +W  MI GYA +     A+     +H  G+ P   +      A S 
Sbjct: 371 AEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF---GHVK----------------- 195
           +  +  G+Q HS+A++ G +   +V N+L+ +Y  +   G V+                 
Sbjct: 431 IEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSF 490

Query: 196 -----------DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
                      +A  VF  M   D+V+W ++I+  A   + NEA+ +FR M  E   P+ 
Sbjct: 491 MSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNP 550

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
             +  L      LGA  LG++ HT   K+G+   + V NAL+  Y KC     + +VF  
Sbjct: 551 PILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLKVFDS 609

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           M +R+  +W+T++ G A +G G+EA+ +++ M   G +P EVTFVG+L+ACSH G+VDEG
Sbjct: 610 MEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEG 669

Query: 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424
             +FK M  +YG+ P +EH+ CMVDLLGRAG V+ A  +I +M + P++VIW  LLGAC 
Sbjct: 670 HQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACK 729

Query: 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGH 484
           IH +  I   A   L  +EP ++G+YV+LSN+Y+ +  W  V +VR+ M +  V K PG 
Sbjct: 730 IHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGC 789

Query: 485 SLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDA 544
           S +++ N++  F  GD  H Q + I+A L E+   LK  GYVP T+ V  DI+EE+KE +
Sbjct: 790 SWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESS 849

Query: 545 LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHH 604
           L YHSEK+A+A+ L+ T  G P++++KNLR+C DCH  IK +S V  REI VRD +RFHH
Sbjct: 850 LLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHH 909

Query: 605 FKDGHCSC 612
           F++G CSC
Sbjct: 910 FRNGSCSC 917



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 130/283 (45%), Gaps = 14/283 (4%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A   F  +   N +TW+T+I   +++     A  +Y +  +  +   T     L + 
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLAR- 333

Query: 153 ISKLADVR-MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             ++ D + + +Q H        E  V   N+++  Y     V +A  +F  M  R+ ++
Sbjct: 334 YGRIDDAKILFDQIH--------EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTIS 385

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W  +I G+A NG+  +AL   + +  +G+ P   ++ S F AC+ + AL  G++ H+   
Sbjct: 386 WAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV 445

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K G   N  V NAL+  Y K   I + +++F  M  ++ VS+++ +  L  N    EA +
Sbjct: 446 KAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARD 505

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           +F  M      P  V++  ++ AC+     +E    F+ M  E
Sbjct: 506 VFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHE 544



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 52/377 (13%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   +I  WN+MI  Y  +  P     L   +    ++  T     LL   ++
Sbjct: 52  AREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGT----ILLSGYAR 107

Query: 156 LADVRMGEQT-HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
              VR   +    + +RN         N++V  Y   G +  A K+F+ M  RD+ +WN+
Sbjct: 108 AGRVRDARRVFDGMGVRN-----TVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNT 162

Query: 215 VINGFA-----------------SNG--------------KPNEALTLFREMASEGVEPD 243
           ++ G+                   NG              +   A  +FR M  EG+ P+
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPE 222

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-CGIIIAAQRVF 302
              +VS+ SA   LG   +    H  V K G   +V V  A+L+ Y+K   ++ +A + F
Sbjct: 223 QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFF 282

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
             M  RN  +WST++  L+  G   +A  +++   +   VP   +   +L   +  G +D
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS-VPSRTS---MLTGLARYGRID 338

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           +    F ++ +     P +  +  M+    +  +V +A +    M    N + W  ++  
Sbjct: 339 DAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPF-RNTISWAGMIAG 392

Query: 423 CTIHGHSAIAEIARSTL 439
              +G S  A ++   L
Sbjct: 393 YARNGRSEQALVSLQAL 409



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 31/206 (15%)

Query: 181 QNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGV 240
           Q++ +      G + +A +VF+ M  RD++AWNS+I  + +NG P+   +L   ++   +
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 241 EPDGYTMVSLFSACAELGALALGRRA-------HTYVWKVGL------------------ 275
                T   L S  A  G +   RR        +T  W   +                  
Sbjct: 96  R----TGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDA 151

Query: 276 --SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
             S +V+  N +L  Y    ++  A+ +F  M +RN VSW+ ++ G  +      A ++F
Sbjct: 152 MPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211

Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCG 359
           + M   G  P +   V VL A  H G
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLG 237


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 321/554 (57%), Gaps = 33/554 (5%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS 154
           A N+F+ +   +  +W +++    ++  P L + ++  M    G++PD + +  L+KA +
Sbjct: 57  ALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACA 116

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG---------------------- 192
            L  ++ G+Q H+  I +       V++SLV MYA  G                      
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTA 176

Query: 193 ---------HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE-P 242
                       DA ++F+ M  ++L++W ++I+G   +G   ++  LF EM S+G++  
Sbjct: 177 MISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIV 236

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           D + + S+  A A L  L LG++ H  V  +G   ++ V+NAL+D Y+KC  ++AA+++F
Sbjct: 237 DPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIF 296

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
             M +R+ VSW++++VG A +G  +EAL L+  M   G  P EVTFVG++YACSH G+V 
Sbjct: 297 GRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVS 356

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           +G  +F  M  +YGI P ++H+ C++DLL R+G +++A   I+ M   P+   W  LL A
Sbjct: 357 KGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA 416

Query: 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
           C  H ++ I       LL L+P+    Y+LLSN+YA    W +V +VRR M    VKK P
Sbjct: 417 CNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEP 476

Query: 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
           G+S + LG     F  G+ SHP  EEI  +L E+  ++K  GY+P T +V  D+E++EKE
Sbjct: 477 GYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKE 536

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
             L +HSE++A+A+ L+   PG  + +VKNLRVC DCH  +K IS +  REIVVRD +R+
Sbjct: 537 RQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRY 596

Query: 603 HHFKDGHCSCRDYW 616
           HHFKDG CSC ++W
Sbjct: 597 HHFKDGKCSCNNFW 610



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 38/306 (12%)

Query: 48  LLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           L++ CA   +  + KQVHA  I    P+++ D+ K  +  + +          +F  +  
Sbjct: 111 LVKACAILGAMKQGKQVHATFIVS--PVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISS 168

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY------------------- 146
            N  +W  MI GYA+S   L A++L+ KM V  +   T                      
Sbjct: 169 KNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEM 228

Query: 147 ---------PFLLKAI----SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
                    PF+L +I    + LA + +G+Q H + I  G+ES +FV N+LV MYA    
Sbjct: 229 RSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSD 288

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           V  A K+F  M +RD+V+W S+I G A +G   EAL+L+  M S G++P+  T V L  A
Sbjct: 289 VLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYA 348

Query: 254 CAELGALALGRR-AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAV 311
           C+ +G ++ GR   ++ +   G++ ++     LLD  S+ G +  A+ + + M  K +  
Sbjct: 349 CSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEA 408

Query: 312 SWSTLV 317
           +W+ L+
Sbjct: 409 TWAALL 414



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           + L+A ++     +G++ H   I+ G +    + N+L++MY   G ++DA  +F  +  R
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           D ++W S++        P+  L++F  M   +G++PD Y    L  ACA LGA+  G++ 
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV 127

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H       +SD+  V ++L+D Y+KCG+    + VF  +  +N++SW+ ++ G A +G  
Sbjct: 128 HATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRK 187

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            +A++LF++M +   +       G++ +    G   + F  F  M+ +
Sbjct: 188 LDAIQLFQKMPVKNLLSWTALISGLVQS----GNWVDSFYLFMEMRSK 231



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           +V    ACA   +  +G++ H ++ K G+    +++N L++ Y KCG+I  A  +F ++ 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEG 364
            R+ +SW++++            L +F  M +  G  P    F  ++ AC+  G + +G
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQG 124


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 333/595 (55%), Gaps = 35/595 (5%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S   ++ +HA  ++ G+  + P+    +     S   P   A ++F      +I+ ++++
Sbjct: 18  SPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLP--DALHLFDETPRRDIYIYSSL 75

Query: 115 IRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +   + SA+P LA+ +   M     + PD      +    ++L   R+G Q H+  + + 
Sbjct: 76  LTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSP 135

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           +     V++SLV MY   G   D  KVF+ MS ++ V W ++++G+ASNG+  EAL LFR
Sbjct: 136 YNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFR 195

Query: 234 -------------------------------EMASEGVE-PDGYTMVSLFSACAELGALA 261
                                          EM  +GV   D + +  +    A+L A  
Sbjct: 196 SMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFV 255

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           LGR+ H    ++G   N+ V NAL+D YSKC  I++A+ VF  +  R+ +SW+T+VVG A
Sbjct: 256 LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEA 315

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +G  +EAL L+  M + G  P EVTFVG++YACSH G+V +G   F+ MK+EYGI P++
Sbjct: 316 QHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRL 375

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           +H+ C +DLL R+G + +A E +  M   P+   W  LL ACT +  + +       LL+
Sbjct: 376 QHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 435

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           L PK S  Y+LLSN+YA   +W +V +VR+ M+   ++K PG+S +E G     F  G+ 
Sbjct: 436 LRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEV 495

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
                EEI   L E+  +++  GYVP T +V  D+EE EKE  L  HSE++A+AF L+ +
Sbjct: 496 PLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKS 555

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            PG+ +RVVKNLRVC DCH  +KLIS++  R+IVVRD SRFHHF+ G CSC ++W
Sbjct: 556 PPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 326/562 (58%), Gaps = 14/562 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLI--YAIVSLSFPMSYAHNIFSHVQDPNIFT--WNTMI 115
           KQ+H    + G  L  P +   LI  Y   SL   +  A  +F         T  +N+++
Sbjct: 30  KQLHCHVFKTGCLLE-PFVQTSLISMYGKCSL---IDNARKLFDENPQSRKLTVCYNSLL 85

Query: 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
            GYA ++     V L+ +M   G++ +  T   L++      ++ +G   H   ++ G +
Sbjct: 86  SGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLD 145

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
               V N L+ MY   G +    K+F+ M  + L+ WN++ING+A NG  N  L L++EM
Sbjct: 146 MDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEM 205

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            S+G  PD  T+V + S+CA LGAL++G+     +   G S N  +NNAL++ Y++CG +
Sbjct: 206 ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNL 265

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+ +F  M  ++ VSW+ ++ G  ++G G+ A+ LF EM  GG  P    FV VL AC
Sbjct: 266 KKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSAC 325

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G+ ++G  YF  M+ +YG+ P  EH+ CMVDLLGRAG + +A E I++M +  +  +
Sbjct: 326 SHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGAL 385

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC IH +  +AE+A   +++LEP ++G YVLLSN+Y        +  VR  M K
Sbjct: 386 WGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRK 445

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK-LEGYVPRTENVFA 534
            ++KK PG S VE   RV  FF GDR+HPQT EI+  L E+   +K L+G          
Sbjct: 446 RKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDHE--- 502

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
               EE  +++  HSEK+A+AF L+NT   T + ++KNLR+C DCHL IKL+SK+  R+ 
Sbjct: 503 --RREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQF 560

Query: 595 VVRDRSRFHHFKDGHCSCRDYW 616
           VVRD +RFHHFK+G CSC++YW
Sbjct: 561 VVRDATRFHHFKNGFCSCKEYW 582



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M  SG  P+  T+PF +K+ + L+    G+Q H    + G     FVQ SL+ MY     
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 194 VKDACKVFEL--MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           + +A K+F+    S +  V +NS+++G+A N +  + + LF EM   GVE +G TM+ L 
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
             C   G L LG   H +  K GL  + +V N LL  Y K G I   +++F EM ++  +
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W+ ++ G A NG     LEL+KEME  GF P  +T VGVL +C+H G +  G    ++M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGHSA 430
           +  +G          +V++  R G +K+A +      MP  +V+ W  ++G   +HG   
Sbjct: 241 EG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDG--MPVKSVVSWTAIIGGYGMHGQGE 297

Query: 431 IA 432
           +A
Sbjct: 298 VA 299


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 333/595 (55%), Gaps = 35/595 (5%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTM 114
           S   ++ +HA  ++ G+  + P+    +     S   P   A ++F      +I+ ++++
Sbjct: 100 SPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLP--DALHLFDETPRRDIYIYSSL 157

Query: 115 IRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
           +   + SA+P LA+ +   M     + PD      +    ++L   R+G Q H+  + + 
Sbjct: 158 LTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSP 217

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
           +     V++SLV MY   G   D  KVF+ MS ++ V W ++++G+ASNG+  EAL LFR
Sbjct: 218 YNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFR 277

Query: 234 -------------------------------EMASEGVE-PDGYTMVSLFSACAELGALA 261
                                          EM  +GV   D + +  +    A+L A  
Sbjct: 278 SMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFV 337

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           LGR+ H    ++G   N+ V NAL+D YSKC  I++A+ VF  +  R+ +SW+T+VVG A
Sbjct: 338 LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEA 397

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            +G  +EAL L+  M + G  P EVTFVG++YACSH G+V +G   F+ MK+EYGI P++
Sbjct: 398 QHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRL 457

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           +H+ C +DLL R+G + +A E +  M   P+   W  LL ACT +  + +       LL+
Sbjct: 458 QHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 517

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           L PK S  Y+LLSN+YA   +W +V +VR+ M+   ++K PG+S +E G     F  G+ 
Sbjct: 518 LRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEV 577

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
                EEI   L E+  +++  GYVP T +V  D+EE EKE  L  HSE++A+AF L+ +
Sbjct: 578 PLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKS 637

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            PG+ +RVVKNLRVC DCH  +KLIS++  R+IVVRD SRFHHF+ G CSC ++W
Sbjct: 638 PPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 309/556 (55%), Gaps = 35/556 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  V       WN MI GY +S     A EL+ +M    +  D  T+  +L A + 
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 312

Query: 156 LADVRMGEQTHSVAIR--NGF--ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
                 G+  H   IR    F  E+ + V N+LV +Y+  G +  A ++F+ M+ +D+V+
Sbjct: 313 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 372

Query: 212 WNSVINGFASNG-------------------------------KPNEALTLFREMASEGV 240
           WN++++G+  +G                                  +AL LF +M +E V
Sbjct: 373 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 432

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P  YT     +AC ELGAL  GR+ H ++ + G   + +  NALL  Y+KCG +  A+ 
Sbjct: 433 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 492

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  M   ++VSW+ ++  L  +G G+EALELF +M   G  P  ++F+ +L AC+H G+
Sbjct: 493 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGL 552

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEGF YF+ MK ++GI P  +H+  ++DLLGR+G + +A + I+ M   P   IW  +L
Sbjct: 553 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAIL 612

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C  +G       A   L ++ P+H G Y+LLSN Y+   RW++   VR+ M    VKK
Sbjct: 613 SGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 672

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+G+++  F +GD  HP+ +E++  L  I  +++  GYVP T+ V  D+E  E
Sbjct: 673 EPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHE 732

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L  HSEK+A+ F L+   PG  V V+KNLR+C DCH A+  +SK   REIVVRD  
Sbjct: 733 KEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVR 792

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC +YW
Sbjct: 793 RFHHFKDGECSCGNYW 808



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 165/392 (42%), Gaps = 80/392 (20%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGE--QTHSV 168
           N M+  +A ++    AV ++  +  SG ++PD +++  L+ A+ ++ ++      Q H  
Sbjct: 131 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 190

Query: 169 AIRNGFESLVFVQNSLVHMYAAF----------------------------------GHV 194
            +++G  +++ V N+L+ +Y                                     G V
Sbjct: 191 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  VFE +  +  V WN++I+G+  +G   +A  LFR M SE V  D +T  S+ SAC
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310

Query: 255 AELGALALGRRAHTYVWKVGLSDN------VNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           A  G    G+  H  +  + L  N      + VNNAL+  YSK G I+ A+R+F  M  +
Sbjct: 311 ANAGFFVHGKSVHGQI--IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 368

Query: 309 NAVSWST-------------------------------LVVGLAVNGFGKEALELFKEME 337
           + VSW+T                               +V G    G  ++AL+LF +M 
Sbjct: 369 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMR 428

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P + T+ G + AC   G +  G      +  + G          ++ +  + G V
Sbjct: 429 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAV 487

Query: 398 KQAYEYIQNMLMPP-NAVIWRTLLGACTIHGH 428
             A   +  ++MP  ++V W  ++ A   HGH
Sbjct: 488 NDA--RLVFLVMPNLDSVSWNAMISALGQHGH 517



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 12/201 (5%)

Query: 182 NSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            SLV  +AA G ++DA   F+ +  + RD V  N++++ FA       A+++F  +   G
Sbjct: 98  TSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 157

Query: 240 -VEPDGYTMVSLFSACAELGALALGR--RAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            + PD Y+  +L SA  ++  LA     + H  V K G +  ++V+NAL+  Y KC    
Sbjct: 158 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 217

Query: 297 A---AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
           A   A++V  EM  ++ ++W+T+VVG    G    A  +F+E++ G F   +V +  ++ 
Sbjct: 218 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVD-GKF---DVVWNAMIS 273

Query: 354 ACSHCGMVDEGFSYFKRMKDE 374
                GM  + F  F+RM  E
Sbjct: 274 GYVQSGMCADAFELFRRMVSE 294


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/513 (40%), Positives = 320/513 (62%), Gaps = 2/513 (0%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+ F + ++ R  A    P  A+  Y  +  + +   +  +  + KA + L+ +R G   
Sbjct: 68  PDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGI 127

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ A+  G  S  FVQ SLV +Y+  G +  A K+F+ + ++ +VAWN++I+G+  NG  
Sbjct: 128 HAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLA 187

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
             A+ ++REM   G  PD  T V+  SACA+ GAL LGR+    +    +  NV +  AL
Sbjct: 188 GRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAAL 247

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           ++ Y++CG++  A+  F  +++RN V+W++++ G  ++G G EA++LF  M   G  P +
Sbjct: 248 VNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPND 307

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFV VL AC+H G+V EG   F  MK  YG++P++EH+  MVD+ GRAGL+  A  +I 
Sbjct: 308 VTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIH 367

Query: 406 NML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + +   P   +W  +LGAC +H    +       L+ LEP+     VLLSNLYA   +  
Sbjct: 368 DSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALSGKMN 427

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +V++VR TM+K R+KK  G+SL+E+      F MG++SHP+T EI+  L ++ +K+   G
Sbjct: 428 HVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVG 487

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAF-MLVNTAPGTPVRVVKNLRVCADCHLAI 583
           YVP+T++V  ++EEEE+E AL YH EK+A+AF +++ +   TP+R++KNLR+C DCHLAI
Sbjct: 488 YVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICEDCHLAI 547

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K +S V +REI+VRD  RFHHFK G CSC++YW
Sbjct: 548 KYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 312/559 (55%), Gaps = 7/559 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLG--KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           KQ+HA +++ G  +N+  +G   + +Y+   L F    A  +F  +   N+  WN  I  
Sbjct: 78  KQIHAIALKLG-QINDKFVGCSAFDMYSKTGLKFE---AQRLFDEMPPRNVAVWNAYISN 133

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177
                 P  A++ + +    G +PD  T+   L A +    + +G Q H + IR+GFE  
Sbjct: 134 AVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGD 193

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           V V N ++ +Y     V+ A  VF  M  R+ V+W +++     N +  +A  +F     
Sbjct: 194 VSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRK 253

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
           EG+E   Y + S+ SA A +  L  GR  H    K  +  ++ V +AL+D Y KCG I  
Sbjct: 254 EGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIED 313

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
            ++VF EM +RN VSW+ ++ G A  G    A+ LF+EM+    V   VT + VL ACS 
Sbjct: 314 CEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEA-VANYVTLICVLSACSR 372

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G V  G   F+ M+D Y I P  EH+ C+ D+LGRAG+V++AYE++Q M + P   +W 
Sbjct: 373 GGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWG 432

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
            LL AC ++G   + +IA   L +L+PK SG++VLLSN++A   RW     VR+ M    
Sbjct: 433 ALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVG 492

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIE 537
           +KK  G S V   N+V  F   D SH +  EI AML ++  +++  GY+P T     D+E
Sbjct: 493 IKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLE 552

Query: 538 EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVR 597
           EEEK   + YHSEKIA+AF L+   PG P+R+ KNLR+C DCH A K IS +  REI+VR
Sbjct: 553 EEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVR 612

Query: 598 DRSRFHHFKDGHCSCRDYW 616
           D +RFH F+D  CSCRD+W
Sbjct: 613 DNNRFHRFRDSQCSCRDFW 631



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 179/379 (47%), Gaps = 9/379 (2%)

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167
           + TW  +I G  ++     A+  +SKM    IKP+  T+P   KA + L     G+Q H+
Sbjct: 23  VVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGKQIHA 82

Query: 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           +A++ G  +  FV  S   MY+  G   +A ++F+ M  R++  WN+ I+    +G+P +
Sbjct: 83  IALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGK 142

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+  F E    G EPD  T  +  +ACA+   L LGR+ H  V + G   +V+V N ++D
Sbjct: 143 AIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIID 202

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y KC  +  A+ VF  M +RN+VSW T+V     N   ++A  +F      G    +  
Sbjct: 203 VYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYM 262

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
              V+ A +    ++ G S    +  +  +   I     +VD+ G+ G ++   +    M
Sbjct: 263 VSSVISAYAGISGLEFGRSVHA-LAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEM 321

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
               N V W  ++     + H    ++A +   +++ +   +YV L  + +   R   V+
Sbjct: 322 -PERNLVSWNAMISG---YAHQGDVDMAMTLFEEMQSEAVANYVTLICVLSACSRGGAVK 377

Query: 468 ---EVRRTMVKERVKKTPG 483
              E+  +M ++R +  PG
Sbjct: 378 LGNEIFESM-RDRYRIEPG 395



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 11/277 (3%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246
           MY+       A  + +L   R +V W ++I+G   NG  + AL  F +M  E ++P+ +T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
               F A   L     G++ H    K+G  ++  V  +  D YSK G+   AQR+F EM 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
            RN   W+  +    ++G   +A++ F E    G  P  +TF   L AC+    +D G  
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG-R 179

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
               +    G    +     ++D+ G+   V+ A E + N +   N+V W T++ AC  +
Sbjct: 180 QLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELA-EMVFNGMGRRNSVSWCTMVAACEQN 238

Query: 427 GHSAIAEIARSTLLQLEPKHSG----DYVLLSNLYAY 459
                 E  ++ ++ L  +  G    DY++ S + AY
Sbjct: 239 D-----EKEKACVVFLMGRKEGIELTDYMVSSVISAY 270


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 317/558 (56%), Gaps = 37/558 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  ++  ++ +WN MI  Y  + +   A+ELY K+ + G K    T+  +L A S 
Sbjct: 261 AREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSS 320

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +  +  G   HS  +  G +S V V  +LV+MYA  G +++A KVF  M  RD VAW+++
Sbjct: 321 VKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTL 380

Query: 216 INGFASNGKPNEA----------------------------------LTLFREM-ASEGV 240
           I  +ASNG   +A                                  + +FREM  + G+
Sbjct: 381 IGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +PD  T +++  ACA LG L+  +  H  + +  L  NV V N L++ Y++CG +  A+R
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAER 500

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F   +++  VSW+ +V   +  G   EAL+LF+EM++ G  P +VT+  +L+ C+H G 
Sbjct: 501 LFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           +++G+ YF  M + + + P  +HF  MVDLLGR+G +  A E +++M   P+ V W T L
Sbjct: 561 LEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
            AC IHG   + E A   + +L+P  +  Y+ +SN+YA    W  V  VR+ M +  +KK
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKK 680

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+  ++ EF  G + HP+T+EI   L  +   ++  GYVP T+ V  D+ E E
Sbjct: 681 LPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGE 740

Query: 541 KEDALSYHSEKIAIAFMLVNT-APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
           KE  L YHSEK+AIAF LV++   G P+RVVKNLRVC+DCH A K I+++  R+I+VRD 
Sbjct: 741 KETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDC 800

Query: 600 SRFHHF-KDGHCSCRDYW 616
           +RFH F  DG CSC DYW
Sbjct: 801 NRFHRFSSDGKCSCGDYW 818



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 188/341 (55%), Gaps = 6/341 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ +WN MI  YA++ +   A+ LY +M++ G+  D  T+  +L A S LA    G + H
Sbjct: 74  NVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIH 130

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           +    +G +S   + N+LV MYA FG V DA ++F+ +  RD  +WN+VI   + +G  +
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL +F+EM  + V+P+  T +++ S  +    L  GR+ H  +   G   ++ V  AL+
Sbjct: 191 GALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALI 249

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
           + Y KCG    A+ VF +M+KR+ VSW+ ++    +NG   EALEL++++++ GF   + 
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKA 309

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TFV +L ACS    + +G      +  E G+  ++     +V++  + G +++A + + N
Sbjct: 310 TFVSILGACSSVKALAQGRLVHSHIL-ERGLDSEVAVATALVNMYAKCGSLEEARK-VFN 367

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447
            +   +AV W TL+GA   +G+   A  AR    +L  + +
Sbjct: 368 AMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 190/372 (51%), Gaps = 38/372 (10%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +Q  +  +WN +I  +++S +   A+ ++ +M    +KP++ TY  ++   S 
Sbjct: 161 AKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFST 219

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G + H+  + NGF++ + V  +L++MY   G   +A +VF+ M +RD+V+WN +
Sbjct: 220 PEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +  NG  +EAL L++++  EG +    T VS+  AC+ + ALA GR  H+++ + GL
Sbjct: 280 IGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE------- 328
              V V  AL++ Y+KCG +  A++VF  M+ R+AV+WSTL+   A NG+GK+       
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 329 ---------------------------ALELFKEME-IGGFVPGEVTFVGVLYACSHCGM 360
                                      A+++F+EM    G  P  VTF+ VL AC+  G 
Sbjct: 400 FDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           + E  +   ++  E  +   +     ++++  R G +++A E +         V W  ++
Sbjct: 460 LSEVKALHAQIS-ESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMV 517

Query: 421 GACTIHGHSAIA 432
            A + +G  A A
Sbjct: 518 AAFSQYGRYAEA 529



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 14/293 (4%)

Query: 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK 199
           +PD  T+  +L + S   DV  G   H     + FE    V N+L+ MY     + DA  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 200 VFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
           VFE M   +R++V+WN++I  +A NG   EAL L+  M  +G+  D  T VS+  AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
            +LA GR  H  V+  GL    ++ NAL+  Y++ G +  A+R+F+ ++ R+  SW+ ++
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-- 375
           +  + +G    AL +FKEM+     P   T++ V+   S   ++ EG    +++  E   
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEG----RKIHAEIVA 235

Query: 376 -GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
            G    +     ++++ G+ G   +A E    M    + V W  ++G   ++G
Sbjct: 236 NGFDTDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCYVLNG 287


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 309/556 (55%), Gaps = 35/556 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  V       WN MI GY  S   + A EL+ +M +  +  D  T+  +L A + 
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 156 LADVRMGEQTHSVAIR--NGF--ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           +     G+  H   IR    F  E+ + V N+LV  Y+  G++  A ++F+ M+ +D+V+
Sbjct: 307 VGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS 366

Query: 212 WNSVINGFASN-------------------------------GKPNEALTLFREMASEGV 240
           WN++++G+  +                               G   +AL LF +M SE V
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P  YT     +AC ELGAL  G++ H ++ ++G   + +  NAL+  Y++CG +  A  
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHL 486

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           +F  M   ++VSW+ ++  L  +G G+EALELF  M   G  P  ++F+ VL AC+H G+
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGL 546

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEGF YF+ MK ++GI+P  +H+  ++DLLGRAG + +A + I+ M   P   IW  +L
Sbjct: 547 VDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAIL 606

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C   G   +   A   L ++ P+H G Y+LLSN Y+    W++   VR+ M    VKK
Sbjct: 607 SGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKK 666

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E GN+V  F +GD  HP+  E++  L  +  K++  GYVP T+ V  D+E  +
Sbjct: 667 EPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQ 726

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L  HSE++A+ F L+N  PG  V V+KNLR+C DCH AI  +SK   REIVVRD  
Sbjct: 727 KEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVR 786

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC +YW
Sbjct: 787 RFHHFKDGECSCGNYW 802



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 169/392 (43%), Gaps = 80/392 (20%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLAD--VRMGEQTHSV 168
           N +I  YA +++   AV ++  +  SG ++PD +++  LL A   L +  VR   Q H  
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCS 184

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGH---VKDACKVFELMSERDL---------------- 209
            +++G    + V N+LV +Y         +DA KV + M  +D                 
Sbjct: 185 VLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDV 244

Query: 210 ---------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
                          V WN++I+G+  +G   EA  LFR M  E V  D +T  S+ SAC
Sbjct: 245 GAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSAC 304

Query: 255 AELGALALGRRAHTYVWKVGLSDN------VNVNNALLDFYSKCGIIIAAQR-------- 300
           A +G  A G+  H  + +  L  N      + VNNAL+ FYSKCG I  A+R        
Sbjct: 305 ANVGLFAHGKSVHGQIIR--LQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK 362

Query: 301 -----------------------VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
                                  VF EM  +N +SW  +V G    GF ++AL+LF +M 
Sbjct: 363 DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMR 422

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P + T+ G + AC   G +  G      +  + G          ++ +  R G V
Sbjct: 423 SENVKPCDYTYAGAIAACGELGALKHGKQLHGHIV-QLGFEGSNSAGNALITMYARCGAV 481

Query: 398 KQAYEYIQNMLMPP-NAVIWRTLLGACTIHGH 428
           K+A  ++  ++MP  ++V W  ++ A   HGH
Sbjct: 482 KEA--HLMFLVMPNIDSVSWNAMISALGQHGH 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 12/198 (6%)

Query: 182 NSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREM-ASE 238
            SLV  YAA   +  A   F+ +  + RD V  N+VI+ +A       A+ +FR + AS 
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRA--HTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            + PD Y+  +L SA   L  +++   A  H  V K G    ++V NAL+  Y KC    
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 297 A---AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
           A   A++V  EM  ++ ++W+T+VVG    G    A  +F+E++ G F   +V +  ++ 
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVD-GKF---DVVWNAMIS 267

Query: 354 ACSHCGMVDEGFSYFKRM 371
              H GM  E F  F+RM
Sbjct: 268 GYVHSGMAVEAFELFRRM 285


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 307/511 (60%), Gaps = 36/511 (7%)

Query: 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA--------- 189
           I PD   +  LL+A     D+R   +TH+  IR G+ +   +  SL+  Y          
Sbjct: 7   ILPDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAY 66

Query: 190 ------------------------AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
                                     G  + A KVF  M +RD+V WNS+I G+  NGK 
Sbjct: 67  QVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKF 126

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EAL  F+ M S  VEPD +T  S+ +ACA LGAL   +  H  + +  +  N  +++AL
Sbjct: 127 EEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSAL 186

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D YSKCG I  A+ VF  + + +   W++L+ GLAV+G   +A+ +F +ME    +P  
Sbjct: 187 IDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDS 246

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           +TF+G+L ACSHCG+V EG  YF  M++ Y I P++EH+G MVDLLGRAGL+ +AY  I 
Sbjct: 247 LTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMIT 306

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            M M P+ ++WR LL AC  H ++ + E+A + +    PK SGDYVLLSN+Y  + RW N
Sbjct: 307 AMPMEPDVIVWRILLSACRTHRNTELGEVAVANISG--PK-SGDYVLLSNIYCSQNRWDN 363

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
            QEVR  M +E V+K  G S  E  + V  F  GD+SHP+TE ++ +L  + ++ KLEG+
Sbjct: 364 AQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKLEGF 423

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
           VP TE V  D+ EEEKE+ L +HSEK+A+A+ ++ T+PGT +R+ KNLR+C DCH  IK+
Sbjct: 424 VPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCHNWIKM 483

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +S + SR I++RDR RFH F+ G CSC DYW
Sbjct: 484 VSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 92/170 (54%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ TWN+MI GY  +     A+  +  M  S ++PD  T+  ++ A ++
Sbjct: 98  AKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACAR 157

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  +   +  H + ++   E    + ++L+ MY+  G ++ A +VFE +   D+  WNS+
Sbjct: 158 LGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSL 217

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
           ING A +G   +A+ +F +M +E V PD  T + +  AC+  G +  GR+
Sbjct: 218 INGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRK 267


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/586 (37%), Positives = 321/586 (54%), Gaps = 5/586 (0%)

Query: 34  QENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           Q +P   V      LL  CA+ +   +  Q+HA  +  G  L +  L   L+ A      
Sbjct: 23  QPHPPGLVREAVELLLHRCAAERALPQAHQLHALMLATGA-LRSRYLSNKLVQAYGQCG- 80

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            +  AH +F+   DPN+F+W  +I     +A P  A+  Y  M + G  PD H    +  
Sbjct: 81  DVESAHAVFARQPDPNVFSWMMLISACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFC 140

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A++  A++ +G    +            V NSL++MY   G + D  + F  M  RD V+
Sbjct: 141 AVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVS 200

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRRAHTYV 270
           W +++ G    G+   AL L R M  +G       T  +L  AC  L A+A GR  H  +
Sbjct: 201 WTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRI 260

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G+  +V ++ ALL+ Y+KCG +  A+ +F +  + N +++S++V   A NG   +AL
Sbjct: 261 ITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSMVAAYARNGHFGDAL 320

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +LF  ME  G+ P  VTF  VLYACSH G VD+ + YF  ++ + GI    EHFGC VDL
Sbjct: 321 KLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDL 380

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           L RAG +  A +++  M +PP++V W +LL AC IH +  I   A   + +L P  +G Y
Sbjct: 381 LARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAAEHVFRLAPHRAGPY 440

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
            LLSN+Y+   +W    +V++ M    +KK  G S +E+  +  EF +GD  HP   +I 
Sbjct: 441 SLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEFIVGDSWHPDLVQIC 500

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             +  ++K +K  GYVP T+ V  D EEEEKED L +HSEK+AI   L+ T P T + +V
Sbjct: 501 QEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGLGLIKTPPKTTISIV 560

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KN+RVC DCH A K+ISKV  R+IV+RD + FHH +DG+CSCRDYW
Sbjct: 561 KNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGNCSCRDYW 606


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 332/564 (58%), Gaps = 44/564 (7%)

Query: 49  LQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHV 103
           L+ CA++   +  +Q+H+ + R G+     D   ++ ++ +S+         A+ +F  +
Sbjct: 129 LKSCAATDGLVLGRQIHSSTARLGL-----DGNVFVAHSAISMYARCGRPDDAYQMFEEM 183

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
           Q  ++ +WN MI G+A +     A++++ ++  +   KPD  T   +L ++ K       
Sbjct: 184 QYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK------- 236

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            +   +A+  G                          VF+ M  + L++WN+++  + +N
Sbjct: 237 ARVEDIALLKG--------------------------VFDEMRFKGLISWNAMLAVYTNN 270

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
               EA+ LF  M  +G+EPD  T+ ++  +C E+ AL+LG+R H  + +  +  ++ + 
Sbjct: 271 EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE 330

Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           NAL+D Y+ CG +  A+ VF  M  R+ VSW++++     +G G+EA++LF++M   G  
Sbjct: 331 NALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLE 390

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P  + FV +L ACSH G++D G  YF  M  E+ I PK+EH+ CMVDLLGRAG +++AY+
Sbjct: 391 PDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYD 450

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
           +I  M + PN  +W  LLGAC IH +  I  +A  +LL+L PK +G YVLLSN+YA   R
Sbjct: 451 FIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGR 510

Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
           W +V  VR  M  + +KK PG S  ELG+RV  F +GD SHPQ++ I+  L+E+ ++++ 
Sbjct: 511 WADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIRE 570

Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
            GY P  E    D+EEE+KE  LS HSEK+AIAF+L+NT PGTP+R+  NLR C+DCH A
Sbjct: 571 MGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHA 630

Query: 583 IKLISKVYSREIVVRDRSRFHHFK 606
            KLIS +  REI+++D +R H+ K
Sbjct: 631 AKLISTIAGREIILKDVNRIHYMK 654



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 148/327 (45%), Gaps = 38/327 (11%)

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMG 162
           D     +N ++RG   ++    A+ L++ M   G    PD +TYP  LK+ +    + +G
Sbjct: 82  DRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLG 141

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            Q HS   R G +  VFV +S + MYA  G   DA ++FE M  RD+V+WN++I+GFA  
Sbjct: 142 RQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHA 201

Query: 223 GKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           G    A+ +FRE+ A +  +PD  TM S+  +                + K  + D    
Sbjct: 202 GLFGRAMDVFRELVALQCPKPDAGTMASILPS----------------MGKARVED---- 241

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
                        I   + VF EMR +  +SW+ ++     N    EA+ELF  M+  G 
Sbjct: 242 -------------IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGI 288

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  VT   VL +C     +  G    + +K    +   +     ++D+    G +K+A 
Sbjct: 289 EPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR-MCSSMLLENALMDMYANCGCLKEAR 347

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +   +M    + V W +++ A   HGH
Sbjct: 348 DVFDSM-GTRDVVSWTSIISAYGRHGH 373


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 329/554 (59%), Gaps = 38/554 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  + + ++ +WN M   YA+   P  A+ L+ +M   GI PD  T+   + + S 
Sbjct: 211 ARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSS 270

Query: 156 LAD-------VRMGEQTHSV--------------------AIRNGFESL-----VFVQNS 183
           + D       +RM +Q H V                      RN F+ L         N 
Sbjct: 271 IGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNI 330

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEP 242
           ++  Y   G +  A ++F+ M +RD+V+WNS+I G+A NG+   ++ LF+EM S   ++P
Sbjct: 331 MISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQP 390

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           D  T+ S+ SAC  +GAL L       V +  +   ++  N+L+  YSKCG +  A R+F
Sbjct: 391 DEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIF 450

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
           + M  R+ VS++TL+ G A NG GKEA++L   ME  G  P  VT++GVL ACSH G+++
Sbjct: 451 QTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLN 510

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           EG + FK ++      P ++H+ CMVDLLGRAG + +A   IQ+M M P+A ++ +LL A
Sbjct: 511 EGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNA 565

Query: 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
             IH    + E+A S L +LEP++ G+YVLLSN+YA   RW +V+ VR  M K  +KK+ 
Sbjct: 566 SRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSV 625

Query: 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
           G S VE   +V +F +GDRSH Q+++I+ +LAE+ +K+K  G+V        D+EEEEKE
Sbjct: 626 GMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKE 685

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
           + L  HSEK+AI F L+ +  GT +RVVKNLR+C DCH AIK+ISK+  REIVVRD +RF
Sbjct: 686 EMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 603 HHFKDGHCSCRDYW 616
           H F +G CSC DYW
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 158/386 (40%), Gaps = 76/386 (19%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  + +  +  WN+MI G  +S N   AV L++ M                     
Sbjct: 149 ARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM--------------------- 187

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                          RN     +    S+V  YA  G ++ A + F+ M ER +V+WN++
Sbjct: 188 -------------PARN-----IITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAM 229

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            + +A    P EAL LF +M  EG+ PD  T V   S+C+ +G   L       + +  +
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFRE------------------------------- 304
             N  V  ALLD ++K G +  A+ +F E                               
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 305 -MRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVD 362
            M KR+ VSW++++ G A NG    ++ELFKEM       P EVT   VL AC H G + 
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG- 421
             +     ++ E  I   I  F  ++ +  + G V  A+   Q M    + V + TL+  
Sbjct: 410 LSYWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM-GTRDVVSFNTLISG 467

Query: 422 -ACTIHGHSAIAEIARSTLLQLEPKH 446
            A   HG  AI  +       +EP H
Sbjct: 468 FAANGHGKEAIKLVLTMEEEGIEPDH 493


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 329/554 (59%), Gaps = 38/554 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  + + ++ +WN M   YA+   P  A+ L+ +M   GI PD  T+   + + S 
Sbjct: 211 ARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSS 270

Query: 156 LAD-------VRMGEQTHSV--------------------AIRNGFESL-----VFVQNS 183
           + D       +RM +Q H V                      RN F+ L         N 
Sbjct: 271 IGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNI 330

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEP 242
           ++  Y   G +  A ++F+ M +RD+V+WNS+I G+A NG+   ++ LF+EM S   ++P
Sbjct: 331 MISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQP 390

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           D  T+ S+ SAC  +GAL L       V +  +   ++  N+L+  YSKCG +  A R+F
Sbjct: 391 DEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIF 450

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
           + M  R+ VS++TL+ G A NG GKEA++L   ME  G  P  VT++GVL ACSH G+++
Sbjct: 451 QTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLN 510

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           EG + FK ++      P ++H+ CMVDLLGRAG + +A   IQ+M M P+A ++ +LL A
Sbjct: 511 EGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNA 565

Query: 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
             IH    + E+A S L +LEP++ G+YVLLSN+YA   RW +V+ VR  M K  +KK+ 
Sbjct: 566 SRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSV 625

Query: 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
           G S VE   +V +F +GDRSH Q+++I+ +LAE+ +K+K  G+V        D+EEEEKE
Sbjct: 626 GMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKE 685

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
           + L  HSEK+AI F L+ +  GT +RVVKNLR+C DCH AIK+ISK+  REIVVRD +RF
Sbjct: 686 EMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 603 HHFKDGHCSCRDYW 616
           H F +G CSC DYW
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 158/386 (40%), Gaps = 76/386 (19%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  + +  +  WN+MI G  +S N   AV L++ M                     
Sbjct: 149 ARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM--------------------- 187

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
                          RN     +    S+V  YA  G ++ A + F+ M ER +V+WN++
Sbjct: 188 -------------PARN-----IITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAM 229

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
            + +A    P EAL LF +M  EG+ PD  T V   S+C+ +G   L       + +  +
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFRE------------------------------- 304
             N  V  ALLD ++K G +  A+ +F E                               
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 305 -MRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVD 362
            M KR+ VSW++++ G A NG    ++ELFKEM       P EVT   VL AC H G + 
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG- 421
             +     ++ E  I   I  F  ++ +  + G V  A+   Q M    + V + TL+  
Sbjct: 410 LSYWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM-GTRDVVSFNTLISG 467

Query: 422 -ACTIHGHSAIAEIARSTLLQLEPKH 446
            A   HG  AI  +       +EP H
Sbjct: 468 FAANGHGKEAIKLVLTMEEEGIEPDH 493


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 306/485 (63%), Gaps = 2/485 (0%)

Query: 134 MHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH 193
           M + G++ +  TY  +L   +    +  G + HS     G E  V V  +LV+MY     
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS--EGVEPDGYTMVSLF 251
           V++A   FE +S  ++V+W++++  +A NG    AL L+REM S  +G+ P+  T ++L 
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
            AC+ LGALA GR+ H  V + G   ++ V NAL++FY +CG +  A+ VF  MR+R+ +
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SWS+++   A  G   EA+EL+  M   G +P ++ F+ VL+ACS+ G+V+    +F+ +
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
             +  + P +EH+ CMVD+LGRAG ++ A + ++ M   P  +++ T+L AC ++     
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVER 300

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            E A   + +L+P++S  Y+ L+N+Y+  +R  +   +R+ M +  +KK PG S +E+ +
Sbjct: 301 GEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLD 360

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
           RV EF  GD+ HPQ +EI+A +  + +++K  GY   T+ V  D+EE+EKE+ L YHSEK
Sbjct: 361 RVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEK 420

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           +AIAF L++T PG P+R+VKNLRVC+DCH A K+ISKV  REI+VRD +RFHHF DG CS
Sbjct: 421 LAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCS 480

Query: 612 CRDYW 616
           C DYW
Sbjct: 481 CNDYW 485



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAI 153
           A   F  +  PN+ +W+ M+  YA++ +  +A+ELY +M  +  G+ P+  T+  LL A 
Sbjct: 64  ARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDAC 123

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           S L  +  G + H+     GF++ + V N+LV+ Y   G + DA  VF+ M  RD+++W+
Sbjct: 124 SFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWS 183

Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL-ALGRRAHTYVWK 272
           S+I+ FA  G+ +EA+ L+  M SEG  PD    +S+  AC+  G + A G    + V  
Sbjct: 184 SMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGD 243

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
             +   +     ++D   + G +  A+ + R M
Sbjct: 244 TQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLM 276


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 341/576 (59%), Gaps = 6/576 (1%)

Query: 46  ITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           +++L VC+      KL+++HAF +R G+ L    +   LI A       + +A  +F  +
Sbjct: 275 LSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGC-LLHACRVFDGI 333

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
               + +WN +I  +A++     A+EL+ +M +  G KPD  +   LL A   L  +  G
Sbjct: 334 CSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHG 393

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           +  H   +RNG E   F++ SL+ +Y   G    A  +F+ + E+D V+WN++I G++ N
Sbjct: 394 KAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQN 453

Query: 223 GKPNEALTLFREMASE--GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
           G P E+L LFREM S+  G  P      S   AC+EL A+ LG+  H +  K  L ++  
Sbjct: 454 GLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSF 513

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
           ++++++D YSKCG +  A+  F  ++ ++AVSW+ ++ G AVNG GKEA+ L+ +M   G
Sbjct: 514 LSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREG 573

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
             P   T++G+L AC H GM+++G  +F+ M++   I  K+EH+ C++ +L RAG    A
Sbjct: 574 MEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADA 633

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
              ++ M   P+A I  ++L AC +HG   + +     LL+LEP  +  YVL SN+YA  
Sbjct: 634 VALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGS 693

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
           ++W  +++VR+ +    V K PG S +++  +V+ F  G+ S P+  ++  M   + +K+
Sbjct: 694 RQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKI 753

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
           +  GY P T  +  ++EEEEK +AL +HSEK AIAF L+ TA  T VRV KN+R+C DCH
Sbjct: 754 RAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCH 813

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            A KLISKV  REIVVRD+ RFHHF+DG CSC DYW
Sbjct: 814 NAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 14/308 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +QVHA + + G+   +P +G  L+ ++      +  A  +F  +   N+ +WN ++   A
Sbjct: 83  RQVHAVAAKLGLADGDPFVGNSLV-SMYGRCGRVDDAEKVFEGMAGRNLVSWNALM---A 138

Query: 120 ESANPLLAVELYSKM--HVSGIK-PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
             A+P   +EL+      + G   PD  T   +L   + LA    G   H +A+++G+++
Sbjct: 139 AVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198

Query: 177 LVFVQNSLVHMYAAFGHVKDA-CKVFEL--MSERDLVAWNSVINGFASNGKPNEALTLFR 233
              V N LV MYA  G + DA C   E    + R++V+WN ++ G+A NG+   A  L R
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258

Query: 234 EMASE--GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN-VNNALLDFYS 290
           EM  E  GV  D  TM+S+   C+ L  LA  R  H +V + GL    + V NAL+  Y 
Sbjct: 259 EMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYG 318

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFV 349
           +CG ++ A RVF  +  +   SW+ L+   A NG    A+ELF+EM    G  P   +  
Sbjct: 319 RCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIG 378

Query: 350 GVLYACSH 357
            +L AC +
Sbjct: 379 SLLLACGN 386



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 125/257 (48%), Gaps = 18/257 (7%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
           WN ++   + +     A+ +  ++  +  G+ PD  T P  LK+         G Q H+V
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 169 AIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNE 227
           A + G  +   FV NSLV MY   G V DA KVFE M+ R+LV+WN+++   A    P  
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD---PRR 145

Query: 228 ALTLFREMASE---GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            L LFR+   +      PD  T+V++   CA L     GR  H    K G      V+N 
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNV 205

Query: 285 LLDFYSKCGIIIAAQRVFREM---RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-- 339
           L+D Y+KCG +  A+  F E      RN VSW+ ++ G A NG    A  L +EM++   
Sbjct: 206 LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEER 265

Query: 340 GFVPGEVTFVGVLYACS 356
           G    E+T + VL  CS
Sbjct: 266 GVPADEITMLSVLPVCS 282



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 22/235 (9%)

Query: 209 LVAWNSVINGFASNGKPNEALTLFREM--ASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           L  WN ++   +  G+  +AL +   +  AS+GV PD +T+     +C        GR+ 
Sbjct: 30  LPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD----GRQV 85

Query: 267 HTYVWKVGLSD-NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
           H    K+GL+D +  V N+L+  Y +CG +  A++VF  M  RN VSW+ L+  +A    
Sbjct: 86  HAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADP-- 143

Query: 326 GKEALELFKEM--EIGGF-VPGEVTFVGVLYACSHCGMVDEGFS-YFKRMKDEYGIMPKI 381
            +  LELF++   ++GG   P E T V VL  C+     + G + +   +K  +   P++
Sbjct: 144 -RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRV 202

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPP----NAVIWRTLLGACTIHGHSAIA 432
            +   +VD+  + G +  A      +  PP    N V W  +LG    +G +  A
Sbjct: 203 SNV--LVDMYAKCGEMADA--ECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAA 253


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 306/556 (55%), Gaps = 35/556 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A + F  +       WN MI GY +S     A EL+ +M    I PD  T+  LL A + 
Sbjct: 249 ARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACAN 308

Query: 156 LADVRMGEQTHSVAIR--NGF--ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
                 G+  H   IR    F  E+ + V N+LV +Y+  G +  A K+F+ M+ +D+V+
Sbjct: 309 AGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVS 368

Query: 212 WNSV-------------------------------INGFASNGKPNEALTLFREMASEGV 240
           WN++                               ++G+   G   +AL LF +M SE V
Sbjct: 369 WNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDV 428

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P  YT     +AC ELGAL  G++ H ++ + G   + +  NALL  Y++CG +  A+ 
Sbjct: 429 KPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARL 488

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  M   ++VSW+ ++  L  +G G+EALELF +M   G  P  ++F+ +L AC+H G+
Sbjct: 489 VFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGL 548

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VD+GF YF+ M+ ++GI P  +H+  ++DLLGRAG + +A + I+ M   P   IW  +L
Sbjct: 549 VDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAIL 608

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C I+G   +   A   L ++ P+H G Y+LLSN Y+   RW++   VR+ M    VKK
Sbjct: 609 SGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 668

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+GN+V  F +GD  HP   E++  L  +  K++  GYVP T+    D+   E
Sbjct: 669 EPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHE 728

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L  HSE++A++F L+    G  V V+KNL++C DCH A+  +S+   REIVVRD  
Sbjct: 729 KEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVR 788

Query: 601 RFHHFKDGHCSCRDYW 616
           RFHHFKDG CSC +YW
Sbjct: 789 RFHHFKDGECSCGNYW 804



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 165/391 (42%), Gaps = 77/391 (19%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKLADVRMGE--QTHS 167
           N MI  +A ++    AV ++  +  S   ++PD +++  LL A+ ++ D+ +    Q H 
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHC 185

Query: 168 VAIRNGFESLVFVQNSLVHMYA---AFGHVKDACKVFELMSERDL--------------- 209
              + G  +++ V N+L+ +Y    A G  +DA KV + M E+D                
Sbjct: 186 AVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD 245

Query: 210 ----------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                           V WN++I+G+  +G   EA  LFR M S+ + PD +T  SL SA
Sbjct: 246 VHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSA 305

Query: 254 CAELGALALGRRAHTYVWKVGLS----DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
           CA  G    G+  H    ++         + VNNAL+  YSK G I  A ++F  M  ++
Sbjct: 306 CANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKD 365

Query: 310 AVSWST-------------------------------LVVGLAVNGFGKEALELFKEMEI 338
            VSW+T                               +V G    G  ++AL+LF +M  
Sbjct: 366 VVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
               P + T+ G + AC   G +  G      +  + G          ++ +  R G VK
Sbjct: 426 EDVKPCDYTYAGAVAACGELGALKHGKQLHAHLV-QCGFEASNSAGNALLTMYARCGAVK 484

Query: 399 QAYEYIQNMLMPP-NAVIWRTLLGACTIHGH 428
            A   +  ++MP  ++V W  ++ A   HGH
Sbjct: 485 DA--RLVFLVMPNVDSVSWNAMISALGQHGH 513



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 44/282 (15%)

Query: 182 NSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREM--AS 237
            SLV  YA  G ++D+   F+ +  + RD V  N++I+ FA       A+++FR +  + 
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 238 EGVEPDGYTMVSLFSACAELGALALGR--RAHTYVWKVGLSDNVNVNNALLDFYSKC--- 292
           + + PD Y+  SL SA  ++  LA+    + H  V K+G    ++V+NAL+  Y KC   
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVV-------------------------------GLA 321
           G+   A++V  EM +++ ++W+T+VV                               G  
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY---FKRMKDEYGIM 378
            +G   EA ELF+ M      P E TF  +L AC++ G    G S    F R++ ++   
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
             +     +V L  ++G +  A +   +M +  + V W T+L
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTL-KDVVSWNTIL 373


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/564 (38%), Positives = 316/564 (56%), Gaps = 49/564 (8%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           +Y   +F      + F  N ++R         L + L+S+      + + H++ FLL +I
Sbjct: 96  AYPLALFRRANSTSAFASNNLLRVLPHP----LPLTLFSRFR----RRNPHSFTFLLASI 147

Query: 154 SKLADVR---------MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-EL 203
           S   +           +G   H++A++ G    +FV+N+LVH Y   G V    +VF EL
Sbjct: 148 SNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDEL 207

Query: 204 MSERDLVAWNSVINGFASNG----------------------------KPNE---ALTLF 232
              RD++ WN V+ G+   G                            K  E   AL +F
Sbjct: 208 PRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVF 267

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
           R M  +GV P+   +V+  SA A LG L  G+  H  V + G+   +NV  AL+D Y+KC
Sbjct: 268 RNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKC 327

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G +  A+ VF  MR+R+  +W+ ++ GLA +G G++A+ELF+     G  P  VTFVGVL
Sbjct: 328 GCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVL 387

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
             CS  G+V EG  YFK + ++Y I P++EH+GCMVDLLGRAGLV +A E I+ M + P+
Sbjct: 388 NGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPD 447

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            V+W T+L +C  HG   +     + L++L+P HSG YVLLS +YA   +W  V+EVR+ 
Sbjct: 448 PVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKL 507

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M      K+ G SL+E   +V +F +GD  H  + +I+  L  I K+L   GYVP   +V
Sbjct: 508 MSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSV 567

Query: 533 FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR 592
             DI EEEK  A+  HSE++AIA+  +    G+P+R+VKNLRVC DCH   K+++ V+ R
Sbjct: 568 LHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQR 627

Query: 593 EIVVRDRSRFHHFKDGHCSCRDYW 616
           EI+VRD SRFHH K+G CSC DYW
Sbjct: 628 EIIVRDGSRFHHMKEGKCSCLDYW 651



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 33/279 (11%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M+ A  +F  +   +  +W+T++ GY +     +A+ ++  M   G++P+       L A
Sbjct: 229 MTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSA 288

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            ++L  +  G+  H+V  R+G    + V  +LV MYA  G V  A +VF+ M  RD+ AW
Sbjct: 289 AARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAW 348

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I G A++G   +A+ LF    SEG+ P   T V + + C+  G +A GRR       
Sbjct: 349 NAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRR------- 401

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                           Y K  +I+   R+  EM       +  +V  L   G   EA+EL
Sbjct: 402 ----------------YFK--LIVEKYRIEPEMEH-----YGCMVDLLGRAGLVPEAIEL 438

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
            + M I    P  V +  +L +C   G+VD G S   ++
Sbjct: 439 IEGMHIA---PDPVLWGTILSSCKTHGLVDLGVSVGNKL 474


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 312/529 (58%), Gaps = 17/529 (3%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +   N+ TW  M+ GYA +    +A +L+  M      P+ +   +    
Sbjct: 195 LDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM------PERNEVSWTAML 248

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +      RM E +      + F+++    V V N ++  +   G V  A +VF+ M ERD
Sbjct: 249 LGYTHSGRMREAS------SLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERD 302

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
              W+++I  +   G   EAL LFR M  EG+  +  +++S+ S C  L +L  G++ H 
Sbjct: 303 NGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHA 362

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            + +     ++ V + L+  Y KCG ++ A++VF     ++ V W++++ G + +G G+E
Sbjct: 363 QLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEE 422

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           AL +F +M   G  P +VTF+GVL ACS+ G V EG   F+ MK +Y + P IEH+ C+V
Sbjct: 423 ALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLV 482

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
           DLLGRA  V +A + ++ M M P+A++W  LLGAC  H    +AE+A   L QLEPK++G
Sbjct: 483 DLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAG 542

Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD-RSHPQTE 507
            YVLLSN+YAY+ RW +V+ +R  +    V K PG S +E+  +V  F  GD + HP+  
Sbjct: 543 PYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQP 602

Query: 508 EIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPV 567
            I  ML ++   L+  GY P    V  D++EEEK  +L YHSEK+A+A+ L+    G P+
Sbjct: 603 IIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPI 662

Query: 568 RVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           RV+KNLRVC DCH AIKLI+KV  REI++RD +RFHHFKDGHCSC+DYW
Sbjct: 663 RVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 119/299 (39%), Gaps = 70/299 (23%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F  + D N+ +W +M+RGY  + +   A  L+  M    +   T     LL+ 
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE 161

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                                                  G V DA K+F++M E+D+VA 
Sbjct: 162 ---------------------------------------GRVDDARKLFDMMPEKDVVAV 182

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR------- 265
            ++I G+   G+ +EA  LF EM    V     T  ++ S  A  G + + R+       
Sbjct: 183 TNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFEVMPE 238

Query: 266 -----------AHTYVWKVGLSDN---------VNVNNALLDFYSKCGIIIAAQRVFREM 305
                       +T+  ++  + +         V V N ++  +   G +  A+RVF+ M
Sbjct: 239 RNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGM 298

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           ++R+  +WS ++      G+  EAL LF+ M+  G      + + VL  C     +D G
Sbjct: 299 KERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 296/527 (56%), Gaps = 21/527 (3%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           WN M+ GYA++     A+EL+++M   +G+ P   T   +L A ++       E  H   
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           ++ G     FVQN+L+ +YA  G ++ A  +F  +  RD+V+WN++I G    G  ++A 
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAF 462

Query: 230 TLFREMASEG------------------VEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
            L REM  +G                  V P+  T+++L   CA L A A G+  H Y  
Sbjct: 463 QLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAM 522

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           +  L  ++ V +AL+D Y+KCG +  ++ VF  + KRN ++W+ L++   ++G G EA+ 
Sbjct: 523 RHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIA 582

Query: 332 LFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           LF  M +     P EVTF+  L ACSH GMVD G   F  MK  +G+ P  +   C VD+
Sbjct: 583 LFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDI 642

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LGRAG + +AY  I +M      V  W + LGAC +H +  + EIA   L QLEP  +  
Sbjct: 643 LGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASH 702

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLL N+Y+    W    EVR  M +  V K PG S +EL   +  F  G+ +HP++  +
Sbjct: 703 YVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLV 762

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           HA +  + ++++ +GY P T +V  DIEE EK   L YHSEK+AIAF L+ T PG  +RV
Sbjct: 763 HAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRV 822

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            KNLRVC DCH A K IS++  REIV+RD  RFHHF DG CSC DYW
Sbjct: 823 AKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 192/406 (47%), Gaps = 36/406 (8%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLN-------NPDLGKYLIYAIVSLSFPMSYAHNIFS 101
           L   A S   L+ + A    HG  L         P +   L+ A       ++ A  +F+
Sbjct: 62  LPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCG-DLTAALALFN 120

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA-DVR 160
            +   +  T+N++I         L A++    M + G    + T   +L A S LA D+R
Sbjct: 121 AMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLR 180

Query: 161 MGEQTHSVAIRNGF----ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD-----LVA 211
           +G + H+ A++NGF    E   F  N+L+ MYA  G V DA  +F  +   D     +V 
Sbjct: 181 LGREAHAFALKNGFLDGDERFAF--NALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WN++++    +G+  EA+ +  +M + GV PDG T  S   AC++L  L+LGR  H YV 
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 272 K-VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM--RKRNAVSWSTLVVGLAVNGFGKE 328
           K   L+ N  V +AL+D Y+    +  A+RVF  +    R    W+ +V G A  G  +E
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 329 ALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVD-----EGFSYFKRMKDEYGIMPKIE 382
           ALELF  ME   G VP E T  GVL AC+            G+   + M D     P ++
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADN----PFVQ 414

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +   ++DL  R G + +A  +I   + P + V W TL+  C + GH
Sbjct: 415 N--ALMDLYARLGDM-EAARWIFAAIEPRDVVSWNTLITGCVVQGH 457



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 26/294 (8%)

Query: 48  LLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L  CA S+     + VH + ++ G+  +NP +   L+     L   M  A  IF+ ++ 
Sbjct: 382 VLPACARSETFAGKEAVHGYVLKRGMA-DNPFVQNALMDLYARLG-DMEAARWIFAAIEP 439

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSG------------------IKPDTHTYP 147
            ++ +WNT+I G     +   A +L  +M   G                  + P+  T  
Sbjct: 440 RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLM 499

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            LL   + LA    G++ H  A+R+  +S + V ++LV MYA  G +  +  VF+ + +R
Sbjct: 500 TLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKR 559

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMA-SEGVEPDGYTMVSLFSACAELGALALGRRA 266
           +++ WN +I  +  +G  +EA+ LF  M  S   +P+  T ++  +AC+  G +  G   
Sbjct: 560 NVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMEL 619

Query: 267 -HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR--KRNAVSWSTLV 317
            H+     G+    +++   +D   + G +  A  +   M   ++   +WS+ +
Sbjct: 620 FHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFL 673


>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 303/476 (63%), Gaps = 6/476 (1%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           T+PFLLK  +      +G+Q H++  + GF   +++QN LVHMY+ FG +  A  +F+ M
Sbjct: 69  TFPFLLKCCAPSKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGDLVLARSLFDRM 128

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
             RD+V+W S+I+G  ++  P EA++LF  M   GVE +  T++S+  A A+ GAL++GR
Sbjct: 129 PHRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEVNEATVISVLRARADSGALSMGR 188

Query: 265 RAHTYV--WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322
           + H  +  W + +    NV+ AL+D Y+K G I+  ++VF ++  R+   W+ ++ GLA 
Sbjct: 189 KVHANLEEWGIEIHSKSNVSTALVDMYAKSGCIV--RKVFDDVVDRDVFVWTAMISGLAS 246

Query: 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
           +G  K+A+++F +ME  G  P E T   VL AC + G++ EGF  F  ++  YG+ P I+
Sbjct: 247 HGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQ 306

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE--IARSTLL 440
           HFGC+VDLL RAG +K+A +++  M + P+AV+WRTL+ AC +HG    AE  +    + 
Sbjct: 307 HFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGDDDRAERLMKHLEIQ 366

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
            +    SG Y+L SN+YA   +W N  EVR  M K+ + K  G S +E+   V EF MGD
Sbjct: 367 DMRADDSGSYILTSNVYASTGKWCNKAEVRELMNKKGLVKPLGSSRIEIDGGVHEFVMGD 426

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
            +HP+ EEI   LAE+  K++ EGY PR   V  ++++EEK   L +HSEK+A+A+ L+ 
Sbjct: 427 YNHPEAEEIFVELAEVMDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIR 486

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              G+ + +VKNLR C DCH  +KLISK+  R+IVVRDR RFHHFK+G CSC+DYW
Sbjct: 487 IGHGSTIWIVKNLRSCEDCHEFMKLISKICKRDIVVRDRIRFHHFKNGECSCKDYW 542



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 12/298 (4%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLG-KYLIYAIVSLSFPMSYAHNIFSHVQ 104
           LL+ CA SK     KQ+HA   + G     PDL  + ++  + S    +  A ++F  + 
Sbjct: 73  LLKCCAPSKLPPLGKQLHALLTKLGFA---PDLYIQNVLVHMYSEFGDLVLARSLFDRMP 129

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             ++ +W +MI G      P+ A+ L+ +M   G++ +  T   +L+A +    + MG +
Sbjct: 130 HRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEVNEATVISVLRARADSGALSMGRK 189

Query: 165 THSVAIRNGFE--SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
            H+     G E  S   V  +LV MYA  G +    KVF+ + +RD+  W ++I+G AS+
Sbjct: 190 VHANLEEWGIEIHSKSNVSTALVDMYAKSGCI--VRKVFDDVVDRDVFVWTAMISGLASH 247

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVGLSDNVNV 281
           G   +A+ +F +M S GV+PD  T+ ++ +AC   G +  G    + V  + G+  ++  
Sbjct: 248 GLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQH 307

Query: 282 NNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
              L+D  ++ G +  A+     M  + +AV W TL+    V+G    A  L K +EI
Sbjct: 308 FGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGDDDRAERLMKHLEI 365



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS-VA 169
           W  MI G A       A++++  M  SG+KPD  T   +L A      +R G    S V 
Sbjct: 237 WTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFMLFSDVQ 296

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEA 228
            R G +  +     LV + A  G +K+A      M  E D V W ++I     +G  + A
Sbjct: 297 RRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGDDDRA 356

Query: 229 LTLFREMASEGVEPD 243
             L + +  + +  D
Sbjct: 357 ERLMKHLEIQDMRAD 371


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 304/542 (56%), Gaps = 35/542 (6%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
            WN MI GY        A+ L  KM   GI+ D  TY  ++ A + +   +MG+Q H+  
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 170 IRNGFES----LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV---------- 215
           ++N         + V N+L+ +Y     V +A K+F  M  R+++ WN++          
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 216 ---------------------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
                                I+G A NG  +E L LF++M  +G EP  +      +AC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           + LGAL  GR+ H  +  +G   +++V NA++  Y+KCG++ AA+ VF  M   + VSW+
Sbjct: 436 SVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWN 495

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           +++  L  +G G +A+ELF +M   G  P  +TF+ VL ACSH G+V++G  YF  M + 
Sbjct: 496 SMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLES 555

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YGI P  +H+  MVDL  RAG+   A   I +M   P A +W  LL  C IHG+  +   
Sbjct: 556 YGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   L +L P++ G YVLLSN+YA   RW  V +VR+ M  + V+K P  S +E+ N+V 
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
            F + D  HP+   ++  L ++  ++K  GY+P T+ V  D+E E+KE ALS HSEK+A+
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAV 735

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
            F ++   PG  VRV KN+R+C DCH A K +SKV  REI+VRDR RFHHFK+G CSCRD
Sbjct: 736 GFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRD 795

Query: 615 YW 616
           YW
Sbjct: 796 YW 797



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 80/399 (20%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSVA 169
           +N MI GYA + +   A+EL+  M     +PD  T+  +L A+   + + +   Q H   
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAV 174

Query: 170 IRNGFESLVF-VQNSLVHMYAA----------------------------------FGHV 194
           ++ G   +   V N+L+ +Y                                     G+V
Sbjct: 175 VKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYV 234

Query: 195 KD-----ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
           ++     A +VFE M E    AWN++I+G+   G   EALTL R+M   G++ D  T  +
Sbjct: 235 RNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDN----VNVNNALLDFYSKCGIIIAAQRVFREM 305
           + SACA +G+  +G++ H Y+ K  L+ N    ++V+NAL+  Y K   +  A+++F  M
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 306 RKRNAVSW-------------------------------STLVVGLAVNGFGKEALELFK 334
             RN ++W                               + ++ GLA NGFG E L+LFK
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M + GF P +  F G L ACS  G ++ G     ++    G    +     M+ +  + 
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYAKC 473

Query: 395 GLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIA 432
           G+V+ A      + MP  + V W +++ A   HGH   A
Sbjct: 474 GVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKA 510



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A + F  +   N+ T   MI G A++      ++L+ +M + G +P    +   L A
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L  +  G Q H+  +  G+ES + V N+++ MYA  G V+ A  VF  M   DLV+W
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           NS+I     +G   +A+ LF +M  EGV PD  T +++ +AC+  G +  GR   ++ + 
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGK 327
             G++   +    ++D + + G+   A+ V   M  K  A  W  L+ G  ++G    G 
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 328 EALE-LFKEM 336
           EA E LFK M
Sbjct: 615 EAAEQLFKLM 624



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 36/308 (11%)

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL----VFVQ 181
           LA  +++ M  SG KP  H    LL+   K +++        V  R  FE +       +
Sbjct: 31  LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNL--------VYARQLFEEIPNPDAIAR 82

Query: 182 NSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            +L+  Y A G+++   ++F    +  RD V +N++I G+A NG  + AL LFR M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 240 VEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSK------ 291
             PD +T  S+ SA    +G      + H  V K G+   + +V NALL  Y K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 292 --CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVT 347
             C  +++A+++F EM KR+ ++W+T++ G   N     A E+F+ M   +G        
Sbjct: 203 ISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA------A 256

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG---LVKQAYEYI 404
           +  ++    HCG   E  +  ++M+   GI      +  ++      G   + KQ + YI
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMR-FLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 405 QNMLMPPN 412
               + PN
Sbjct: 316 LKNELNPN 323


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 321/561 (57%), Gaps = 33/561 (5%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           VP+ +  +   +I  +V     +  A  +     + N+ +W ++I GY+ +  P  AV  
Sbjct: 164 VPVKDAVVWATVIGGLVRWGL-LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYC 222

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           ++ M   G++PD       L A SKL ++  G   H +  +   +    +  +L+ MYA 
Sbjct: 223 FNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAK 282

Query: 191 --------------------------------FGHVKDACKVFELMSERDLVAWNSVING 218
                                            GHV  A  +F+ M  RD++ +NS+I G
Sbjct: 283 CGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITG 342

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           +  +G+  +AL LF ++   G+  D +T+VSL +ACA LGAL  GR  H  + +  + ++
Sbjct: 343 YIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEED 402

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V +  AL+D Y KCG +  A  VF  M +R+  +WS ++ GLA NG G +ALE F +M+ 
Sbjct: 403 VYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKR 462

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
            GF P  VT++ VL ACSH  +++EG  +F  M+  + + P+IEH+GCM+DLL R+GL+ 
Sbjct: 463 DGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLD 522

Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A   +Q M M PNAVIW ++L AC +H +  +A  A   LL+L P+    YV L N+Y 
Sbjct: 523 EAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYI 582

Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
             ++W+  + +R  M ++ VKKT G+S + +  +V +F + D+SHP T EI  M+ EI +
Sbjct: 583 DSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIAR 642

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           +LK  GY P T  +  D++EEEKE AL  HSEKIAIAF L++  P  P+ ++KNLRVC D
Sbjct: 643 RLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCED 702

Query: 579 CHLAIKLISKVYSREIVVRDR 599
           CH AIKLIS++++REI+VRDR
Sbjct: 703 CHSAIKLISQLWNREIIVRDR 723



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 175/422 (41%), Gaps = 72/422 (17%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDPNIFTWN 112
           S  +  Q+HA     G   + P     L      LS P  + Y  ++F  +  P  F  +
Sbjct: 11  SVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLHD 70

Query: 113 TMIRGYAE-SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
           T +R   + SA     V +  +M   G++    T+ F+ +  +  A   +    H+  +R
Sbjct: 71  TALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACLR 130

Query: 172 NGFESLV-FVQNSLVHMYAAFGHVKDACKVFELM-------------------------- 204
               S    V N L+HMYA+ G   DA + F+ +                          
Sbjct: 131 TMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARR 190

Query: 205 -----SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
                 ER++V+W S+I G++  G+P +A+  F  M S+GVEPD   ++   SAC++L  
Sbjct: 191 LLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKN 250

Query: 260 LALGRRAHTYVWK--VGLSDNVNVNNALLDFYSKCGIIIAAQRV---------------- 301
           L  GR  H  V K  + ++D + V   L+D Y+KCG I  AQ V                
Sbjct: 251 LEFGRLLHLLVGKKRIQMTDKLVVT--LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVI 308

Query: 302 ----------------FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
                           F +M  R+ +++++++ G   +G  ++AL+LF ++   G     
Sbjct: 309 IDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADN 368

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            T V +L AC+  G + +G +    ++    +   +     +VD+  + G V +A     
Sbjct: 369 FTVVSLLTACASLGALPQGRALHASIEQRI-VEEDVYLVTALVDMYMKCGRVDEATAVFH 427

Query: 406 NM 407
            M
Sbjct: 428 RM 429


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 337/592 (56%), Gaps = 40/592 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIR 116
           ++V+AF    G+ +N+      ++ A+V +      +  A  +F      N+   N M  
Sbjct: 256 EKVYAFIRNSGIEVND-----LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y        A+ +++ M  SG++PD  +    + + S+L ++  G+  H   +RNGFES
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370

Query: 177 LVFVQNSLVHMY-------AAF------------------------GHVKDACKVFELMS 205
              + N+L+ MY        AF                        G V  A + FE M 
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMP 430

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGR 264
           E+++V+WN++I+G        EA+ +F  M S EGV  DG TM+S+ SAC  LGAL L +
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
             + Y+ K G+  +V +   L+D +S+CG   +A  +F  +  R+  +W+  +  +A+ G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
             + A+ELF +M   G  P  V FVG L ACSH G+V +G   F  M   +G+ P+  H+
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GCMVDLLGRAGL+++A + I++M M PN VIW +LL AC + G+  +A  A   +  L P
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAP 670

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
           + +G YVLLSN+YA   RW ++ +VR +M ++ ++K PG S +++  +  EF  GD SHP
Sbjct: 671 ERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHP 730

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +   I AML E++++    G+VP   NV  D++E+EK   LS HSEK+A+A+ L+++  G
Sbjct: 731 EMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKG 790

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T +R+VKNLRVC+DCH   K  SKVY+REI++RD +RFH+ + G CSC D+W
Sbjct: 791 TTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 172/336 (51%), Gaps = 13/336 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           SL + +  ++  P  S ++ C T+         +LK  H    + G+  +   + K +  
Sbjct: 24  SLLNQSKCTKATP--SSLKNCKTI--------DELKMFHRSLTKQGLDNDVSTITKLVAR 73

Query: 85  AI-VSLSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +  +     +S+A  +F + +     F +N++IRGYA S     A+ L+ +M  SGI PD
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +T+PF L A +K      G Q H + ++ G+   +FVQNSLVH YA  G +  A KVF+
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTL-FREMASEGVEPDGYTMVSLFSACAELGALA 261
            MSER++V+W S+I G+A      +A+ L FR +  E V P+  TMV + SACA+L  L 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G + + ++   G+  N  + +AL+D Y KC  I  A+R+F E    N    + +     
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
             G  +EAL +F  M   G  P  ++ +  + +CS 
Sbjct: 314 RQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 49  LQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHV 103
           L  CA S+ K    Q+H   ++ G      DL  ++  ++V        +  A  +F  +
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYA---KDL--FVQNSLVHFYAECGELDSARKVFDEM 195

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
            + N+ +W +MI GYA       AV+L+ +M     + P++ T   ++ A +KL D+  G
Sbjct: 196 SERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG 255

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           E+ ++    +G E    + ++LV MY     +  A ++F+     +L   N++ + +   
Sbjct: 256 EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQ 315

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G   EAL +F  M   GV PD  +M+S  S+C++L  +  G+  H YV + G     N+ 
Sbjct: 316 GLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC 375

Query: 283 NALLDFYSKC-------------------------------GIIIAAQRVFREMRKRNAV 311
           NAL+D Y KC                               G + AA   F  M ++N V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVD-EGFSYFK 369
           SW+T++ GL      +EA+E+F  M+    V  + VT + +  AC H G +D   + Y+ 
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY 495

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
             K+  GI   +     +VD+  R G  + A   I N L   +   W
Sbjct: 496 IEKN--GIQLDVRLGTTLVDMFSRCGDPESAMS-IFNSLTNRDVSAW 539


>gi|302781642|ref|XP_002972595.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
 gi|300160062|gb|EFJ26681.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
          Length = 606

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 321/586 (54%), Gaps = 5/586 (0%)

Query: 34  QENPITSVVRKCITLLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           Q +P   V      LL  CA+ +   +  Q+HA  +  G  L +  L   L+ A      
Sbjct: 23  QPHPPGLVREAVELLLHRCAAERALPQAHQLHALMLATGA-LRSRYLSNKLVQAYGQCG- 80

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            +  AH +F+   DPN+F+W  +I     +A P  A+  Y  M + G  PD H    +  
Sbjct: 81  DVESAHAVFACQPDPNVFSWMMLISACLRNALPRAALGHYRAMQLRGCHPDAHVVSAIFC 140

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A++  A++ +G    +            V NSL++MY   G + D  + F  M  RD V+
Sbjct: 141 AVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVS 200

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVE-PDGYTMVSLFSACAELGALALGRRAHTYV 270
           W +++ G    G+   AL L R M  +G       T  +L  AC  L A+A GR  H  +
Sbjct: 201 WTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRI 260

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
              G+  +V ++ ALL+ Y+KCG +  A+ +F +  + N +++S++VV  A NG   +AL
Sbjct: 261 ITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSMVVAYARNGHFGDAL 320

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           +LF  ME  G+ P  VTF  VLYACSH G VD+ + YF  ++ + GI    EHFGC VDL
Sbjct: 321 KLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDL 380

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
           L RAG +  A +++  M +PP++V W +LL AC IH +  I   A   + +L P  +G Y
Sbjct: 381 LARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAAEHVFRLAPHRAGPY 440

Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
            LLSN+Y+   +W    +V++ M    +KK  G S +E+  +  EF +GD  HP   +I 
Sbjct: 441 SLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEFIVGDSWHPDLVQIC 500

Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
             +  ++K +K  GYVP T+ V  D EEEEKED L +HSEK+AI   L+ T P T + +V
Sbjct: 501 QEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGLGLIKTPPKTTISIV 560

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KN+RVC DCH A K+ISKV  R+IV+RD + FHH +DG CSCRDYW
Sbjct: 561 KNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGKCSCRDYW 606


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 305/530 (57%), Gaps = 10/530 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLK 151
           +S A  +F  +   +   W  MI GYA++ +   AV  +  M   G +  D H +  +L 
Sbjct: 322 LSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 381

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D  + +  H    + GFE  V V+N+L+ MYA    V+ A +V ++    D   
Sbjct: 382 ASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKI----DPGG 437

Query: 212 WN-----SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           WN     S+I+G+       EAL ++ E+  +GVEP+ +T  S+   CA    L  G + 
Sbjct: 438 WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 497

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K  L  +  V + L+D Y KCG+I  + ++F E+  R  ++W+ ++   A +G G
Sbjct: 498 HAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHG 557

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA++ F  M   G  P  + FV +L ACSH G+VDEG  YF  MK+ +GI PK EH+ C
Sbjct: 558 REAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSC 617

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           ++D  GRAG + +AY++I  M + PNA  W +LLGAC + G   + E+A   L++LEP +
Sbjct: 618 IIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN 677

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
           +G +V LS +YA   +W +V+ VR+ M   R+KK PG S V+   +   F   D SHPQ 
Sbjct: 678 TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQ 737

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
           ++I+  L E+T ++K EGY+P T  +  ++E+  KE  L YHSE+IA+AF L++     P
Sbjct: 738 KDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKP 797

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + V KNLR+C DCH A K I KV  R+I+VRD SRFHHF +G CSC DYW
Sbjct: 798 IIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 194/424 (45%), Gaps = 10/424 (2%)

Query: 37  PITSVVRKCITLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS 94
           P  +      +LLQ C  A    + + +HA  +  G    +  L  +LI  + S    ++
Sbjct: 165 PAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLI-TMYSHCADLA 223

Query: 95  YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
            A  +F+ +   N  +W T++ G +++     A+  ++ M  +G+ P T          +
Sbjct: 224 SALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAP-TRFALSSAARAA 282

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
                 +  ++ + +   GF++ +FV ++L  MY+  G + +AC+VF+ M ++D VAW +
Sbjct: 283 AALGAPLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTA 342

Query: 215 VINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
           +I+G+A NG    A+  FR+M  EG V  D +   S+ SA   L    L +  H  V K 
Sbjct: 343 MIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKA 402

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           G    V V NAL+D Y+K   + +A RV + +    N VS ++++ G       +EAL +
Sbjct: 403 GFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVI 462

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
           + E+   G  P E TF  ++  C+   ++++G     ++     I         +VD+ G
Sbjct: 463 YVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYG 521

Query: 393 RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDY 450
           + GL+  + +   N +     + W  ++     HGH   AI    R     + P H    
Sbjct: 522 KCGLISLSMQLF-NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFV 580

Query: 451 VLLS 454
            LL+
Sbjct: 581 SLLT 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 50/245 (20%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFELMSER 207
           LL++  +  D+R G   H+  + +G  +   F+ N L+ MY+    +  A ++F  M  R
Sbjct: 26  LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 85

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEP------------------------- 242
           + V+W ++++G + N    +AL  F  M   GV P                         
Sbjct: 86  NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCH 145

Query: 243 DGYTMV-----------------------SLFSACAELGALALGRRAHT-YVWKVGLSDN 278
            G T++                       SL  +C   G L  GR  H   V     + +
Sbjct: 146 SGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAAS 205

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
             + N L+  YS C  + +A R+F  M +RNAVSW+TLV GL+ N    +AL  F  M  
Sbjct: 206 TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR 265

Query: 339 GGFVP 343
            G  P
Sbjct: 266 AGVAP 270



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 247 MVSLFSACAELGALALGRRAHT-YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           + SL  +C   G L  GR  H   V     + +  + N L+  YS C  + +A R+F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
            +RNAVSW+TLV GL+ N    +AL  F  M   G  P  + +
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIY 125


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 328/577 (56%), Gaps = 10/577 (1%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           +TSV+  C  L       +    Q+H++ +R      N  +   LI   +S+      A 
Sbjct: 239 MTSVISACELL-----GDERLGTQLHSYVVRTAYD-GNISVYNSLIQMYLSVGH-WKEAE 291

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157
           ++FS ++  ++ +W T+I G  ++  P  A+E Y  M ++G  PD  T   +L A + L 
Sbjct: 292 SVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351

Query: 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217
            + MG + H +A R G    V V NSL+ MY+    ++ A ++F  + ++D+++W SVIN
Sbjct: 352 QLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVIN 411

Query: 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD 277
           G   N +  EAL  FR+M  +  +P+  T++S  SACA +GAL  G+  H +  K G+  
Sbjct: 412 GLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGF 470

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           +  + NA+LD Y +CG +  A   F  + +++  +W+ L+ G A  G G   +ELFK M 
Sbjct: 471 DGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMV 529

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P +VTF+ +L ACS  GMV EG  YF+RMK  Y I P ++H+ C+VDLLGRAG +
Sbjct: 530 ESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKL 589

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
            +A+E+I+ M + P+  IW  LL AC IH H  + E+A   + + + +  G Y+LL NLY
Sbjct: 590 NEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLY 649

Query: 458 AYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEIT 517
           A   +W  V +VRRTM +E +   PG S VE+  +V  F  GD  HPQ +EI+ +L    
Sbjct: 650 ADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFY 709

Query: 518 KKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577
           +K+K  G+  + E    D  +  K D    HSE+ AIA+ L+N+APG P+ V KNL +C 
Sbjct: 710 EKMKTSGFNGQ-ECSSMDGIQTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQ 768

Query: 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
            CH  +K ISK+  REI VRD  +FHHFKDG CSC D
Sbjct: 769 SCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 196/376 (52%), Gaps = 6/376 (1%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           V L +  LG  L+   V     +  A N+F  + + ++F+WN ++ GY ++     A+ L
Sbjct: 64  VTLLSVRLGNALLSMFVRFG-DVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCL 122

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           Y ++  +GI+PD +T+P +L++ +   D+  G + H+  +R  F+  V V N+L+ MY  
Sbjct: 123 YHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVK 182

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G V  A  +F+ M  RD ++WN++I+G+  N +  E L LF  M    ++PD  TM S+
Sbjct: 183 CGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSV 242

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
            SAC  LG   LG + H+YV +     N++V N+L+  Y   G    A+ VF  M  R+ 
Sbjct: 243 ISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDV 302

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW+T++ G   N    +ALE +K MEI G +P EVT   VL AC+  G +D G      
Sbjct: 303 VSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK-LHE 361

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGHS 429
           + +  G +  +     ++D+  +   +++A E      +P   VI W +++    I+   
Sbjct: 362 LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQ--IPDKDVISWTSVINGLRINNRC 419

Query: 430 AIAEI-ARSTLLQLEP 444
             A I  R  +L+ +P
Sbjct: 420 FEALIFFRKMILKSKP 435


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/513 (39%), Positives = 322/513 (62%), Gaps = 2/513 (0%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           P+ F + ++ R  A    P  A+  Y ++  + +   +  +  + KA + L+ +R G   
Sbjct: 71  PDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGV 130

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ A+  GF S  FVQ +LV +Y+  G +  A K+F+ + +R +VAWN++I+G+  NG  
Sbjct: 131 HAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLA 190

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
             A+ ++REM   G  PD  T V+  SACA+ GAL LG      +    +  NV +  AL
Sbjct: 191 GRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAAL 250

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           ++ Y++CG++  A+  F  +++RN V+W++++ G  ++G G EA++LF  M   G  P +
Sbjct: 251 VNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPND 310

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFV VL AC+H G+V +G   F  MK  YG++P+ EH+  MVD+ GRAGL+  A ++I 
Sbjct: 311 VTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIH 370

Query: 406 NML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
           + +   P   +W  +LGAC +H + ++       L+ LEP++    VLLSN+YA   +  
Sbjct: 371 DSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKMN 430

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +V++VR TM+K R+KK  G+SL+E+G     F MG++SHP+T EI+  L ++  ++   G
Sbjct: 431 HVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAG 490

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT-PVRVVKNLRVCADCHLAI 583
           Y+P T++V  ++EEEE+E AL YH EK+A+AF L+ T+  T P+R++KNLR+C DCHLAI
Sbjct: 491 YMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICGDCHLAI 550

Query: 584 KLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           K +S V +REI+VRD  RFHHFK G CSC++YW
Sbjct: 551 KYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 329/595 (55%), Gaps = 44/595 (7%)

Query: 61   QVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
            ++H   I+ G      DL  YL  A+++     + +  A+ +F  + +P    WN  I  
Sbjct: 544  EIHGCLIKRGF-----DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIIL 598

Query: 118  YAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-ISKLADVRMGEQTHSVAIRNGFES 176
              +S      VEL+ KM  S +K +T T   +L+A IS+L  + MG++TH   +RNGF+ 
Sbjct: 599  NLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDC 658

Query: 177  LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG------------- 223
             V+V  SL+ MY     +  A  VF+ M  R++ AWNS+++G++  G             
Sbjct: 659  DVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQME 718

Query: 224  ----KPN------------------EALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
                KP+                  EAL  F +M  EGV P+  ++  L  ACA L  L 
Sbjct: 719  KEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQ 778

Query: 262  LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
             G+  H    + G  ++V V  AL+D YSK   +  A +VFR ++ +   SW+ +++G A
Sbjct: 779  KGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFA 838

Query: 322  VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
            + G GKEA+ +F EM+  G  P  +TF  +L AC + G++ EG+ YF  M  +Y I+P++
Sbjct: 839  IFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRL 898

Query: 382  EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
            EH+ CMVDLLGRAG + +A++ I  M + P+A IW  LLG+C IH +   AE A   L +
Sbjct: 899  EHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFK 958

Query: 442  LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
            LEP +S +Y+L+ NLY+   RW ++  +R  M    V+     S +++  RV  F   ++
Sbjct: 959  LEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEK 1018

Query: 502  SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
             HP   +I+  L ++  ++K  GYVP    V+ +++E EK+  L  H+EK+AI + L+  
Sbjct: 1019 PHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKM 1078

Query: 562  APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              G P+RV+KN R+C+DCH A K IS V +RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1079 KAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 177/351 (50%), Gaps = 6/351 (1%)

Query: 55  SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP-NIFTWNT 113
            +H +K +HA  I+     N     K LI +   L F   ++  +  +V  P N   WN+
Sbjct: 435 QEHGIKMMHAQMIKLPQKWNPDAAAKNLISSY--LGFGDFWSAAMVFYVGLPRNYLKWNS 492

Query: 114 MIRGYAESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +  +  SA  L + +E++ ++H  G+  D+  Y   LK  +++ D+ +G + H   I+ 
Sbjct: 493 FVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR 552

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GF+  V+++ +L++ Y     ++ A +VF  M   + + WN  I     + K  + + LF
Sbjct: 553 GFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELF 612

Query: 233 REMASEGVEPDGYTMVSLFSAC-AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
           R+M    ++ +  T+V +  A  +ELG L +G+  H YV + G   +V V  +L+D Y K
Sbjct: 613 RKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 672

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
              + +AQ VF  M+ RN  +W++LV G +  G  ++AL L  +ME  G  P  VT+ G+
Sbjct: 673 NHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGM 732

Query: 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           +   +  G   E  ++F +M+ E G+MP      C++       L+++  E
Sbjct: 733 ISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLLRACASLSLLQKGKE 782



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 38  ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
           IT ++R C +L     S   K K++H  SIR+G  + +  +   LI  + S S  +  AH
Sbjct: 764 ITCLLRACASL-----SLLQKGKEIHCLSIRNGF-IEDVFVATALI-DMYSKSSSLKNAH 816

Query: 98  NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
            +F  +Q+  + +WN MI G+A       A+ ++++M   G+ PD  T+  LL A
Sbjct: 817 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSA 871


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/532 (40%), Positives = 314/532 (59%), Gaps = 14/532 (2%)

Query: 96  AHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           A  +F  + +   ++ +WN M+  Y  +     A++LY +M    ++ D  TY  LL A 
Sbjct: 301 ARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSAC 357

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
           S   DV +G   H   + +  E  V V N+LV MYA  G   +A  VF+ M +R +++W 
Sbjct: 358 SSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWT 417

Query: 214 SVINGFASNGKPNEALTLFREM-------ASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           ++I+ +       EA  LF++M       +S+ V+PD    V++ +ACA++ AL  G+  
Sbjct: 418 TIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMV 477

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLAVNGF 325
                  GLS +  V  A+++ Y KCG I   +R+F  +  R  V  W+ ++   A  G 
Sbjct: 478 SEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQ 537

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIMPKIEHF 384
             EAL+LF  ME+ G  P   +FV +L ACSH G+ D+G SYF  M  EY  +   I+HF
Sbjct: 538 SHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHF 597

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GC+ DLLGR G +K+A E+++ + + P+AV W +LL AC  H     A+   + LL+LEP
Sbjct: 598 GCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEP 657

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
           + +  YV LSN+YA  Q+W  V +VR+ M ++ VKK  G S +E+G  + +F  GD +HP
Sbjct: 658 RCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHP 717

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +  EI   LA++  ++K  GYVP T+ V   ++E+EKE  L  HSE++AIA  L++T  G
Sbjct: 718 RNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLG 777

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           TP+RV KNLRVC+DCH A KLISK+  R+IVVRD +RFH FKDG CSC+DYW
Sbjct: 778 TPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 168/347 (48%), Gaps = 14/347 (4%)

Query: 93  MSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
           +S+A  +F+ ++   N+ +W+ M   +A   N   A+  +  M + GIK        +L 
Sbjct: 196 LSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILS 255

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL 209
           A S  A V+ G   HS    +GFES + V N+++ MY   G V++A KVF+ M E  RD+
Sbjct: 256 ACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDV 315

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN +++ +  N +  +A+ L++ M    +  D  T VSL SAC+    + LGR  H  
Sbjct: 316 VSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQ 372

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           +    L  NV V NAL+  Y+KCG    A+ VF +M +R+ +SW+T++          EA
Sbjct: 373 IVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEA 432

Query: 330 LELFKEM---EIGG----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
             LF++M   E  G      P  + FV +L AC+    +++G           G+     
Sbjct: 433 CHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKA 491

Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
               +V+L G+ G +++       +   P+  +W  ++      G S
Sbjct: 492 VGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQS 538



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 190/427 (44%), Gaps = 59/427 (13%)

Query: 48  LLQVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           LLQ CA ++   + +++H+ +++H +   N  LG +++        P   A   F  ++ 
Sbjct: 49  LLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSP-GDAKAAFDALEQ 107

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            N+++W  ++  +A S      +    +M   G++PD  T+   L +      +R G + 
Sbjct: 108 RNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRI 167

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVINGFASNGK 224
           H + + +  E    V N+L++MY   G +  A +VF  M   R++++W+ +    A +G 
Sbjct: 168 HQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGN 227

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             EAL  FR M   G++     MV++ SAC+    +  GR  H+ +   G    + V NA
Sbjct: 228 VWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANA 287

Query: 285 LLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           ++  Y +CG +  A++VF  M +  R+ VSW+ ++     N  GK+A++L++ M++    
Sbjct: 288 VMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRA-- 345

Query: 343 PGEVTFVGVLYACS-----------------------------------HCGMVDEGFSY 367
             +VT+V +L ACS                                    CG   E  + 
Sbjct: 346 -DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAV 404

Query: 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----------MPPNAVIWR 417
           F +M+        I  +  ++    R  LV +A    Q ML          + P+A+ + 
Sbjct: 405 FDKMEQR-----SIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFV 459

Query: 418 TLLGACT 424
           T+L AC 
Sbjct: 460 TILNACA 466



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 11/375 (2%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR-NGFESLVFVQNSLVHMYAAFGHVKD 196
            ++ +  TY  LL+  ++   +  G + HS+A++ N     + + N +V MYA      D
Sbjct: 38  AVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGD 97

Query: 197 ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256
           A   F+ + +R+L +W  ++  FA +G+  E L     M  +GV PD  T ++   +C +
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWST 315
             +L  G R H  V    L  +  V+NALL+ Y KCG +  A+RVF +M R RN +SWS 
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           +    A++G   EAL  F+ M + G    +   V +L ACS   +V +G           
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RLIHSCIALS 276

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIAEI 434
           G   ++     ++ + GR G V++A +    M      V+ W  +L A  +H       I
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA-YVHNDRGKDAI 335

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
                +QL         LLS   + E   L  + + + +V + ++K      V +GN + 
Sbjct: 336 QLYQRMQLRADKVTYVSLLSACSSAEDVGLG-RVLHKQIVNDELEKN-----VIVGNALV 389

Query: 495 EFFMGDRSHPQTEEI 509
             +    SH +   +
Sbjct: 390 SMYAKCGSHTEARAV 404



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 4/197 (2%)

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG-LSDNVNVNNALLDFYSKC 292
           ++  + V  +  T   L   CA   AL  GR+ H+   K   L  N+ + N ++  Y+ C
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
                A+  F  + +RN  SW+ LV   A++G  KE L   + M   G  P  VTF+  L
Sbjct: 93  DSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 152

Query: 353 YACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411
            +C     + +G    + + D    I PK+ +   ++++  + G +  A      M    
Sbjct: 153 GSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAKMERTR 210

Query: 412 NAVIWRTLLGACTIHGH 428
           N + W  + GA  +HG+
Sbjct: 211 NVISWSIMAGAHALHGN 227


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 305/530 (57%), Gaps = 10/530 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLK 151
           +S A  +F  +   +   W  MI GYA++ +   AV  +  M   G +  D H +  +L 
Sbjct: 173 LSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 232

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D  + +  H    + GFE  V V+N+L+ MYA    V+ A +V ++    D   
Sbjct: 233 ASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKI----DPGG 288

Query: 212 WN-----SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           WN     S+I+G+       EAL ++ E+  +GVEP+ +T  S+   CA    L  G + 
Sbjct: 289 WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 348

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K  L  +  V + L+D Y KCG+I  + ++F E+  R  ++W+ ++   A +G G
Sbjct: 349 HAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHG 408

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA++ F  M   G  P  + FV +L ACSH G+VDEG  YF  MK+ +GI PK EH+ C
Sbjct: 409 REAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSC 468

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           ++D  GRAG + +AY++I  M + PNA  W +LLGAC + G   + E+A   L++LEP +
Sbjct: 469 IIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN 528

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
           +G +V LS +YA   +W +V+ VR+ M   R+KK PG S V+   +   F   D SHPQ 
Sbjct: 529 TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQ 588

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
           ++I+  L E+T ++K EGY+P T  +  ++E+  KE  L YHSE+IA+AF L++     P
Sbjct: 589 KDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKP 648

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + V KNLR+C DCH A K I KV  R+I+VRD SRFHHF +G CSC DYW
Sbjct: 649 IIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 195/414 (47%), Gaps = 9/414 (2%)

Query: 47  TLLQVC--ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +LLQ C  A    + + +HA  +  G    +  L  +LI  + S    ++ A  +F+ + 
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLI-TMYSHCADLASALRLFAAMP 83

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N  +W T++ G +++     A+  ++ M  +G+ P         +A + L     G Q
Sbjct: 84  RRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQ 143

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H V +R GF++ +FV ++L  MY+  G + +AC+VF+ M ++D VAW ++I+G+A NG 
Sbjct: 144 LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 203

Query: 225 PNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283
              A+  FR+M  EG V  D +   S+ SA   L    L +  H  V K G    V V N
Sbjct: 204 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 263

Query: 284 ALLDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
           AL+D Y+K   + +A RV + +    N VS ++++ G       +EAL ++ E+   G  
Sbjct: 264 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 323

Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
           P E TF  ++  C+   ++++G     ++     I         +VD+ G+ GL+  + +
Sbjct: 324 PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQ 382

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDYVLLS 454
              N +     + W  ++     HGH   AI    R     + P H     LL+
Sbjct: 383 LF-NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 435


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/551 (37%), Positives = 325/551 (58%), Gaps = 42/551 (7%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNIFTWNTMIR 116
           +Q+H+ + R G+     D   ++ ++ +S+         A+ +F  +Q  ++ +WN MI 
Sbjct: 32  RQIHSSTARLGL-----DGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMIS 86

Query: 117 GYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           G+A +     A++++ ++  +   KPD  T   +L ++ K        +   +A+  G  
Sbjct: 87  GFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK-------ARVEDIALLKG-- 137

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
                                   VF+ M  + L++WN+++  + +N    EA+ LF  M
Sbjct: 138 ------------------------VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRM 173

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             +G+EPD  T+ ++  +C E+ AL+LG+R H  + +  +  ++ + NAL+D Y+ CG +
Sbjct: 174 QKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCL 233

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A+ VF  M  R+ VSW++++     +G G+EA++LF++M   G  P  + FV +L AC
Sbjct: 234 KEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAAC 293

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G++D G  YF  M  E+ I PK+EH+ CMVDLLGRAG +++AY++I  M + PN  +
Sbjct: 294 SHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERV 353

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC IH +  I  +A  +LL+L PK +G YVLLSN+YA   RW +V  VR  M  
Sbjct: 354 WGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMES 413

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           + +KK PG S  ELG+RV  F +GD SHPQ++ I+  L+E+ ++++  GY P  E    D
Sbjct: 414 KGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHD 473

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EEE+KE  LS HSEK+AIAF+L+NT PGTP+R+  NLR C+DCH A KLIS +  REI+
Sbjct: 474 VEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREII 533

Query: 596 VRDRSRFHHFK 606
           ++D +R H+ K
Sbjct: 534 LKDVNRIHYMK 544



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 36/292 (12%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+ P     P   K+ +    + +G Q HS   R G +  VFV +S + MYA  G   DA
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAE 256
            ++FE M  RD+V+WN++I+GFA  G    A+ +FRE+ A +  +PD  TM S+  +   
Sbjct: 67  YQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS--- 123

Query: 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316
                        + K  + D                 I   + VF EMR +  +SW+ +
Sbjct: 124 -------------MGKARVED-----------------IALLKGVFDEMRFKGLISWNAM 153

Query: 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376
           +     N    EA+ELF  M+  G  P  VT   VL +C     +  G    + +K    
Sbjct: 154 LAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR- 212

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           +   +     ++D+    G +K+A +   +M    + V W +++ A   HGH
Sbjct: 213 MCSSMLLENALMDMYANCGCLKEARDVFDSM-GTRDVVSWTSIISAYGRHGH 263


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 344/608 (56%), Gaps = 47/608 (7%)

Query: 50  QVCASSKHK---LKQVHAFSIRHGV----PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSH 102
           Q+C++++      K++HA  I+ G+    P+ N  L  Y    ++        A  +F  
Sbjct: 10  QLCSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQ------DALQLFDA 63

Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA--DVR 160
           +   +   W +++     S  P  A+ +   +  +G  PD   +  L+KA + L    V+
Sbjct: 64  LPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVK 123

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
            G+Q H+    + F     V++SL+ MYA FG       VF+ +S  + ++W ++I+G+A
Sbjct: 124 QGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYA 183

Query: 221 SNGKPNEALTLFR-------------------------------EMASEGVE-PDGYTMV 248
            +G+  EA  LFR                               EM  EG+   D   + 
Sbjct: 184 RSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLS 243

Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           S+  ACA L    LG++ H  V  +G    + ++NAL+D Y+KC  ++AA+ +F EM ++
Sbjct: 244 SVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRK 303

Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
           + VSW++++VG A +G  +EAL L+ EM + G  P EVTFVG+++ACSH G+V +G + F
Sbjct: 304 DVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLF 363

Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
           + M +++GI P ++H+ C++DL  R+G + +A   I+ M + P+   W  LL +C  HG+
Sbjct: 364 RTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGN 423

Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
           + +A      LL L+P+    Y+LLSN+YA    W +V +VR+ M+    KK PG+S ++
Sbjct: 424 TQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCID 483

Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
           LG     F+ G+ SHP  +EI  ++ E+ ++++  GY P T +V  D++++EKE  L +H
Sbjct: 484 LGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWH 543

Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
           SE++A+A+ L+   PGT +R+VKNLRVC DCH  +KLIS + +REI VRD  R+HHFKDG
Sbjct: 544 SERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDG 603

Query: 609 HCSCRDYW 616
           +CSC D+W
Sbjct: 604 NCSCNDFW 611


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 305/530 (57%), Gaps = 10/530 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLK 151
           +S A  +F  +   +   W  MI GYA++ +   AV  +  M   G +  D H +  +L 
Sbjct: 92  LSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 151

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A   L D  + +  H    + GFE  V V+N+L+ MYA    V+ A +V ++    D   
Sbjct: 152 ASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKI----DPGG 207

Query: 212 WN-----SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
           WN     S+I+G+       EAL ++ E+  +GVEP+ +T  S+   CA    L  G + 
Sbjct: 208 WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 267

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K  L  +  V + L+D Y KCG+I  + ++F E+  R  ++W+ ++   A +G G
Sbjct: 268 HAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHG 327

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           +EA++ F  M   G  P  + FV +L ACSH G+VDEG  YF  MK+ +GI PK EH+ C
Sbjct: 328 REAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSC 387

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           ++D  GRAG + +AY++I  M + PNA  W +LLGAC + G   + E+A   L++LEP +
Sbjct: 388 IIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN 447

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
           +G +V LS +YA   +W +V+ VR+ M   R+KK PG S V+   +   F   D SHPQ 
Sbjct: 448 TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQ 507

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
           ++I+  L E+T ++K EGY+P T  +  ++E+  KE  L YHSE+IA+AF L++     P
Sbjct: 508 KDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKP 567

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + V KNLR+C DCH A K I KV  R+I+VRD SRFHHF +G CSC DYW
Sbjct: 568 IIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 168/352 (47%), Gaps = 6/352 (1%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  +W T++ G +++     A+  ++ M  +G+ P         +A + L     G Q H
Sbjct: 5   NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLH 64

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
            V +R GF++ +FV ++L  MY+  G + +AC+VF+ M ++D VAW ++I+G+A NG   
Sbjct: 65  CVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLE 124

Query: 227 EALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            A+  FR+M  EG V  D +   S+ SA   L    L +  H  V K G    V V NAL
Sbjct: 125 AAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNAL 184

Query: 286 LDFYSKCGIIIAAQRVFR-EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           +D Y+K   + +A RV + +    N VS ++++ G       +EAL ++ E+   G  P 
Sbjct: 185 IDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPN 244

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E TF  ++  C+   ++++G     ++     I         +VD+ G+ GL+  + +  
Sbjct: 245 EFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLF 303

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHSGDYVLLS 454
            N +     + W  ++     HGH   AI    R     + P H     LL+
Sbjct: 304 -NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 354



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M  R+ V+W ++++G + N    +AL  F  M   GV P  + + S   A A LGA   G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
            + H    ++G    + V + L D YSKCG++  A RVF +M +++AV+W+ ++ G A N
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 324 GFGKEALELFKEMEIGGFVPGEV-TFVGVLYACS-----------HCGMVDEGF 365
           G  + A+  F++M+  G V  +   F  VL A             HC +   GF
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGF 174


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/515 (41%), Positives = 311/515 (60%), Gaps = 10/515 (1%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN+MI  Y +      A+ L+ +M   G+  D  T   +L A + L D+  G Q H   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDAC-KVFELMSERDLVAWNSVINGFASNGK-PNE 227
           I+ GF     V + L+ +Y+  G     C KVFE ++E DLV WN++++G++ N +   +
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALL 286
           AL  FR+M   G  P+  + V + SAC+ L + + G++ H+   K  + S+ ++V+NAL+
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             YSKCG +  A+R+F  M + N VS ++++ G A +G   E+L LF+ M      P  +
Sbjct: 387 AMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TF+ VL AC+H G V+EG++YF  MK+++ I P+ EH+ CM+DLLGRAG + +A   I  
Sbjct: 447 TFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR 506

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M   P ++ W +LLGAC  HG+  +A  A + +LQLEP ++  YV+LSN+YA   RW  V
Sbjct: 507 MPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEV 566

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             VR+ M    VKK PG S +E+  R+  F   D SHP  +EI+  L E++ K+K  GYV
Sbjct: 567 ATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626

Query: 527 PRTENVFADIEEE-----EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
           P     +A ++++     EKE  L +HSEK+A+AF L++T  G PV VVKNLR+C DCH 
Sbjct: 627 PDVR--WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHN 684

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           AIK IS +  REI VRD  RFH FK+G CSC DYW
Sbjct: 685 AIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 170/297 (57%), Gaps = 8/297 (2%)

Query: 73  LNNPDLGKY--LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           +++P++  +  +I A    S P+  AH +F  + +P++ ++NT+I  YA+      A+ L
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPL-IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +S M   G+  D  T   ++ A     DV +  Q HSVA+ +GF+S V V N+L+  Y  
Sbjct: 128 FSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 191 FGHVKDACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
            G + DA +VF  M   RD V+WNS+I  +  + + ++AL LF+EM   G+  D +T+ S
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA-AQRVFREMRKR 308
           + +A   L  L+ G + H  + K G   N +V + L+D YSKCG  ++  ++VF E+ + 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 309 NAVSWSTLVVGLAVN-GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + V W+T+V G + N  F ++ALE F++M+  G+ P + +FV V+ ACS+     +G
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q H   I+ G    N  +G  LI         MS    +F  + +P++  WNTM+ GY++
Sbjct: 261 QFHGQLIKTGFH-QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319

Query: 121 SANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES-LV 178
           +   L  A+E + +M   G +P+  ++  ++ A S L+    G+Q HS+A+++   S  +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V N+L+ MY+  G+++DA ++F+ M+E + V+ NS+I G+A +G   E+L LF+ M   
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLER 439

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIA 297
            + P   T +S+ SACA  G +  G      +  K  +       + ++D   + G +  
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 298 AQRVFREMR-KRNAVSWSTLVVGLAVNG 324
           A+ +   M     ++ W++L+     +G
Sbjct: 500 AENLIARMPFNPGSIGWASLLGACRTHG 527



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 136/304 (44%), Gaps = 35/304 (11%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA----------AFGHVKD-- 196
           LLK      D+  G+  HS+ I++      +  N  + +Y+          AF  + D  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 197 -------------------ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
                              A ++F+ + E DLV++N++I+ +A  G+   AL LF  M  
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
            G++ D +T+ ++ +AC +   + L  + H+     G    V+VNNALL +Y K G +  
Sbjct: 134 MGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 298 AQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           A+RVF  M   R+ VSW++++V    +  G +AL LF+EM   G      T   VL A +
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFT 251

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
               +  G  +  ++  + G          ++DL  + G        +   +  P+ V+W
Sbjct: 252 CLEDLSGGLQFHGQLI-KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 417 RTLL 420
            T++
Sbjct: 311 NTMV 314



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 109/280 (38%), Gaps = 52/280 (18%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + ++  C+  SS  + KQ+H+ +++  +P N   +   LI A+ S    +  A  +F  +
Sbjct: 347 VCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI-AMYSKCGNLQDARRLFDRM 405

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            + N  + N+MI GYA+    + ++ L+  M    I P + T+  +L A           
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC---------- 455

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-----DLVAWNSVING 218
                                    A  G V++    F +M E+     +   ++ +I+ 
Sbjct: 456 -------------------------AHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDL 490

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
               GK +EA  L   M      P      SL  AC   G + L  +A   V ++  S N
Sbjct: 491 LGRAGKLSEAENLIARMP---FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS-N 546

Query: 279 VNVNNALLDFYSKCGII--IAAQRVF---REMRKRNAVSW 313
                 L + Y+  G    +A  R F   R ++K+   SW
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSW 586


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/515 (41%), Positives = 311/515 (60%), Gaps = 10/515 (1%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN+MI  Y +      A+ L+ +M   G+  D  T   +L A + L D+  G Q H   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDAC-KVFELMSERDLVAWNSVINGFASNGK-PNE 227
           I+ GF     V + L+ +Y+  G     C KVFE ++E DLV WN++++G++ N +   +
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALL 286
           AL  FR+M   G  P+  + V + SAC+ L + + G++ H+   K  + S+ ++V+NAL+
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346
             YSKCG +  A+R+F  M + N VS ++++ G A +G   E+L LF+ M      P  +
Sbjct: 387 AMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
           TF+ VL AC+H G V+EG++YF  MK+++ I P+ EH+ CM+DLLGRAG + +A   I  
Sbjct: 447 TFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR 506

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
           M   P ++ W +LLGAC  HG+  +A  A + +LQLEP ++  YV+LSN+YA   RW  V
Sbjct: 507 MPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEV 566

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             VR+ M    VKK PG S +E+  R+  F   D SHP  +EI+  L E++ K+K  GYV
Sbjct: 567 ATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626

Query: 527 PRTENVFADIEEE-----EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
           P     +A ++++     EKE  L +HSEK+A+AF L++T  G PV VVKNLR+C DCH 
Sbjct: 627 PDVR--WALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHN 684

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           AIK IS +  REI VRD  RFH FK+G CSC DYW
Sbjct: 685 AIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 170/297 (57%), Gaps = 8/297 (2%)

Query: 73  LNNPDLGKY--LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL 130
           +++P++  +  +I A    S P+  AH +F  + +P++ ++NT+I  YA+      A+ L
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPL-IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA 190
           +S M   G+  D  T   ++ A     DV +  Q HSVA+ +GF+S V V N+L+  Y  
Sbjct: 128 FSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 191 FGHVKDACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
            G + DA +VF  M   RD V+WNS+I  +  + + ++AL LF+EM   G+  D +T+ S
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA-AQRVFREMRKR 308
           + +A   L  L+ G + H  + K G   N +V + L+D YSKCG  ++  ++VF E+ + 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 309 NAVSWSTLVVGLAVN-GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           + V W+T+V G + N  F ++ALE F++M+  G+ P + +FV V+ ACS+     +G
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 61  QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120
           Q H   I+ G    N  +G  LI         MS    +F  + +P++  WNTM+ GY++
Sbjct: 261 QFHGQLIKTGFH-QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319

Query: 121 SANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES-LV 178
           +   L  A+E + +M   G +P+  ++  ++ A S L+    G+Q HS+A+++   S  +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
            V N+L+ MY+  G+++DA ++F+ M+E + V+ NS+I G+A +G   E+L LF+ M   
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLER 439

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIA 297
            + P   T +S+ SACA  G +  G      +  K  +       + ++D   + G +  
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 298 AQRVFREMR-KRNAVSWSTLVVGLAVNG 324
           A+ +   M     ++ W++L+     +G
Sbjct: 500 AENLIARMPFNPGSIGWASLLGACRTHG 527



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 171 RNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           R  F+ +    VF  N+++  YA       A ++F+ + E DLV++N++I+ +A  G+  
Sbjct: 63  RKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETA 122

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL LF  M   G++ DG+T+ ++ +AC +   + L  + H+     G    V+VNNALL
Sbjct: 123 PALGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALL 180

Query: 287 DFYSKCGIIIAAQRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
            +Y K G +  A+RVF  M   R+ VSW++++V    +  G +AL LF+EM   G     
Sbjct: 181 TYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDM 240

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            T   VL A +    +  G  +  ++  + G          ++DL  + G        + 
Sbjct: 241 FTLASVLTAFTCLEDLSGGLQFHGQLI-KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVF 299

Query: 406 NMLMPPNAVIWRTLL 420
             +  P+ V+W T++
Sbjct: 300 EEITEPDLVLWNTMV 314



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 109/280 (38%), Gaps = 52/280 (18%)

Query: 46  ITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + ++  C+  SS  + KQ+H+ +++  +P N   +   LI A+ S    +  A  +F  +
Sbjct: 347 VCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI-AMYSKCGNLQDARRLFDRM 405

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            + N  + N+MI GYA+    + ++ L+  M    I P + T+  +L A           
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC---------- 455

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-----DLVAWNSVING 218
                                    A  G V++    F +M E+     +   ++ +I+ 
Sbjct: 456 -------------------------AHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDL 490

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
               GK +EA  L   M      P      SL  AC   G + L  +A   V ++  S N
Sbjct: 491 LGRAGKLSEAENLIARMP---FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS-N 546

Query: 279 VNVNNALLDFYSKCGII--IAAQRVF---REMRKRNAVSW 313
                 L + Y+  G    +A  R F   R ++K+   SW
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSW 586


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 339/620 (54%), Gaps = 52/620 (8%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           S PA    P+TS                  L+Q H+  IR GV  +     + L +    
Sbjct: 6   SAPAPTPVPLTSFA---------------VLRQHHSQLIRLGVASHAAHARRLLSFLARD 50

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYP 147
                 YA  + +H  DP+   +N +      SA P   A  L + M    ++PD  T+P
Sbjct: 51  PDSHFPYASRLLAHHPDPHPALFNPLF-----SALPTRHAARLLALMLSLPLRPDHFTFP 105

Query: 148 FLLKAISKLADV--------RMGEQTH--------------------SVAIRNGFESLVF 179
            +L +   L  V        ++G   H                    S   R G  +L  
Sbjct: 106 QILPSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDV 165

Query: 180 VQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           V   ++V      G   DA  +F+ M ER+LV+WN++++G+    +  +AL +F EM + 
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRAR 225

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+ + +   +   AC   GALA GR  H +V + G+  +  +  A++D Y KCG +  A
Sbjct: 226 GVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285

Query: 299 QRVFR--EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            RVF    +  +   +W+ ++ G AV+G G++AL+LF  ME  G  P +VT V VL AC+
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACA 345

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  YF  +   YGI PK+EH+GCMVDL GRAG +++A + IQ+M M P+  + 
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             L GA  IHG   + E     +++L+P++SG YVLL+NL A   RW +V  VRR M + 
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            V K  G S++E+   V EF  G   HP+ EE++AM +++ +K++ EGYVP T +V   I
Sbjct: 466 NVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLHAI 525

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            EEEKE  L YHSEK+AIAF L++T PG  +R+ KNLRVC DCH A K +S+V+ R+IVV
Sbjct: 526 AEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVV 585

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR+RFHHFKDG CSC+DYW
Sbjct: 586 RDRNRFHHFKDGQCSCKDYW 605


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/452 (45%), Positives = 286/452 (63%), Gaps = 16/452 (3%)

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE- 238
           V NSLVH YA+ G    A  VF  + +R LV+WN+ ++  A NG    AL LFREM  + 
Sbjct: 101 VANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDR 160

Query: 239 -GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VG-------LSDNVNVNNALLDFY 289
             + PD YT+ S+  ACA  GAL+LG  AH  + + +G       +S +V +NN+L+D Y
Sbjct: 161 PDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLY 220

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTF 348
            KCG +  A++VF  M +R+  SW+ +V+ LA +G  +++L+LF  M  + G VP  +TF
Sbjct: 221 GKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITF 280

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           V VL AC+H G+VDEG  YF  M  ++GI P+IEH+GCMVD+L RAG +++A + +  M 
Sbjct: 281 VAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMN 340

Query: 409 MPPNAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466
             P+++IWR+LL AC     G      +A+  L   +   SG YVLLS +YA  QRW +V
Sbjct: 341 CRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDV 400

Query: 467 QEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526
             +R+ M +E  KK PG S +E+   V +F  GD SHPQ+EEI+  L EI ++L   GY 
Sbjct: 401 GMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYK 460

Query: 527 PRTEN--VFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           P      + ADI+   K   L  HSE++AI+F L+N  PG P+R++KNLRVC DCH   K
Sbjct: 461 PDLSEAPMVADIDRT-KGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISK 519

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           LISK+Y+ EI+VRDR RFHHFKDG CSC+DYW
Sbjct: 520 LISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 551


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/465 (43%), Positives = 295/465 (63%), Gaps = 3/465 (0%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           S  + T  S+     S   + +++ + C S KH L+Q+HA  I+ G+  N   +GK +++
Sbjct: 34  SKLYPTTLSENEGFDSREERVMSVFKQCESMKH-LEQLHAHVIQTGLEQNLFVMGKIIVF 92

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH 144
             VS    M YA  +F  +++P+ F WNTMIRG   +  P  A E Y +M V G   D  
Sbjct: 93  CAVSECGSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNF 152

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           TY FL+K   +L    +G+Q H   +++G E  VFV+N+LVHMY  F  ++ A  +FE M
Sbjct: 153 TYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEM 212

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264
            +  LVAWN++I+     G+  EA+ LF  M   G++PD  T V   SACA LG L +GR
Sbjct: 213 PKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGR 272

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
           R H+ +   GL + V+V+N+L+D Y+KCG++ AA  +F +M+ RN VSW+T+++GLA++G
Sbjct: 273 RVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHG 332

Query: 325 FGKEALELFKEM-EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
            G EALELF +M E     P EVTF+GVL ACSH GMV+EG  YF  M+ +Y I P I+H
Sbjct: 333 HGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKH 392

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
           +G MVD+LGRAGLV++AY  I++M +  N+++WRTLL AC +HG+  +AE  R  LL+LE
Sbjct: 393 YGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELE 452

Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTM-VKERVKKTPGHSLV 487
           P HS DYVLL+N+YA   +W  V  VR++M ++   K  PG+S +
Sbjct: 453 PDHSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 332/578 (57%), Gaps = 34/578 (5%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99
           I++L  CA+S      K VH+ +I+      +  +N  L  Y      S    +  A  +
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMY------SKCGDLDGALRV 308

Query: 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159
           F  + + N+ +W +MI GY        A+ L  +M   G+K D      +L A ++   +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
             G+  H     N   S +FV N+L+ MYA  G ++ A  VF  M  +D+++WN+++   
Sbjct: 369 DNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE- 427

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
                               ++PD  TM  +  ACA L AL  G+  H Y+ + G S + 
Sbjct: 428 --------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
           +V NAL+D Y KCG++  A+ +F  +  ++ VSW+ ++ G  ++G+G EA+  F EM   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P EV+F+ +LYACSH G++++G+ +F  MK+++ I PK+EH+ CMVDLL R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AY++I+ + + P+A IW  LL  C I+    +AE     + +LEP+++G YVLL+N+YA 
Sbjct: 588 AYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR-SHPQTEEIHAMLAEITK 518
            ++   V+ +R  + K+ ++K PG S +E+  RV  F  G+  SHP +++I ++L ++ +
Sbjct: 648 AEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRR 707

Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
           K+K EGY P+T+    + +E +KE AL  HSEK+A+AF L+   P   +RV KNLRVC D
Sbjct: 708 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGD 767

Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           CH   K +SK   REIV+RD +RFHHFKDG+CSCR +W
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 181/382 (47%), Gaps = 46/382 (12%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + D ++ +WN+MI GY  +      + +Y +M   GI  D  T   +L   + 
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  HS+AI++ FE  +   N+L+ MY+  G +  A +VFE M ER++V+W S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I G+  +G  + A+ L ++M  EGV+ D   + S+  ACA  G+L  G+  H Y+    +
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           + N+ V NAL+D Y+KCG +  A  VF  M  ++ +SW+T+V                  
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------------ 425

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH------FGCMVD 389
              G   P   T   +L AC+         S  +R K+ +G + +  +         +VD
Sbjct: 426 ---GELKPDSRTMACILPACA-------SLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKHS 447
           L  + G++  A   + +M+   + V W  ++    +HG+   AIA         +EP   
Sbjct: 476 LYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD-- 532

Query: 448 GDYVLLSNLYA------YEQRW 463
            +   +S LYA       EQ W
Sbjct: 533 -EVSFISILYACSHSGLLEQGW 553



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 184/408 (45%), Gaps = 56/408 (13%)

Query: 65  FSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANP 124
           FS ++G  ++ P L       I     P+  +    +   D  +  +N  I  + +  + 
Sbjct: 24  FSSQNGCFIHKPSLKTTFFSPIFRSCIPVRISATP-TRTIDHQVTDYNAKILHFCQLGDL 82

Query: 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG----------- 173
             A+EL      S +  +T TY  +L+  + L  +  G++ HS+   N            
Sbjct: 83  ENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKL 140

Query: 174 ----------------FESL----VFVQNSLVHMYAAFGHVKDACKVFELMSE------- 206
                           F+++    V++ N +V  YA  G  K++  +F++M E       
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKR 200

Query: 207 -------------RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                        RD+++WNS+I+G+ SNG     L ++++M   G++ D  T++S+   
Sbjct: 201 PESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA  G L+LG+  H+   K      +N +N LLD YSKCG +  A RVF +M +RN VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++++ G   +G+   A+ L ++ME  G     V    +L+AC+  G +D G      +K 
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421
              +   +     ++D+  + G ++ A      M++  + + W T++G
Sbjct: 381 N-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVV-KDIISWNTMVG 426


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 322/577 (55%), Gaps = 12/577 (2%)

Query: 47  TLLQVCASSK--HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFS 101
           ++L+ CA +   +  +Q+H F ++        D  +++   +V +     +   A  +F 
Sbjct: 311 SVLKACAGAGAFNLGRQIHGFMVK-----AVADFDEFVAVGLVDMYAKHGFLDDARKVFD 365

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLADV 159
            +   ++  WN +I G +        + L+ +M   G+  D +  T   +LK+ +    +
Sbjct: 366 FMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAI 425

Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
               Q H++A + G  S   V N L+  Y   G +  A KVF+     D+++  +++   
Sbjct: 426 CHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTAL 485

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
           +      +A+ LF +M  +G+EPD + + SL +AC  L A   G++ H ++ K   + +V
Sbjct: 486 SQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDV 545

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
              NAL+  Y+KCG I  A   F  + +R  VSWS ++ GLA +G GK AL+LF  M   
Sbjct: 546 FAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDE 605

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  +T   VL AC+H G+VD+   YF+ MK+ +GI    EH+ CM+D+LGRAG ++ 
Sbjct: 606 GVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLED 665

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           A E + NM    NA +W  LLGA  +H    +  +A   L  LEP+ SG +VLL+N YA 
Sbjct: 666 AMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYAS 725

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
              W  + +VR+ M    VKK P  S VE+ ++V  F +GD+SHP T +I+  LAE+   
Sbjct: 726 AGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDL 785

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           +   GYVP  E    D++  EKE  LS+HSE++A+AF L++T  G P+RV KNLR+C DC
Sbjct: 786 MNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDC 845

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H+A K ISK+ SREI++RD +RFHHF +G CSC DYW
Sbjct: 846 HVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 163/339 (48%), Gaps = 11/339 (3%)

Query: 94  SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
           S A  +F  + DP   +W++++  Y+ +  P  A+  +  M   G+  +    P +LK  
Sbjct: 54  SAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA 113

Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE----LMSERDL 209
               DVR G Q H++A+       VFV N+LV +Y  FG V +A ++F+    +  ER+ 
Sbjct: 114 P---DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNA 170

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+WN++I+ +  N +  +A+ +FREM   G  P+ +    + +AC     L  GR+ H  
Sbjct: 171 VSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGA 230

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           V + G   +V   NAL+D YSK G I  A  VF +M   + VSW+  + G   +G    A
Sbjct: 231 VVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRA 290

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LEL  +M+  G VP   T   VL AC+  G  + G      M        +    G +VD
Sbjct: 291 LELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVD 349

Query: 390 LLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACTIHG 427
           +  + G +  A +      MP  + ++W  L+  C+  G
Sbjct: 350 MYAKHGFLDDARKVFD--FMPRRDLILWNALISGCSHDG 386



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N  +WNTMI  Y ++     A+ ++ +M  SG +P+   +  ++ A +   D+  G Q H
Sbjct: 169 NAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVH 228

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
              +R G+E  VF  N+LV MY+  G ++ A  VFE M   D+V+WN+ I+G  ++G  +
Sbjct: 229 GAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDH 288

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286
            AL L  +M S G+ P+ +T+ S+  ACA  GA  LGR+ H ++ K     +  V   L+
Sbjct: 289 RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLV 348

Query: 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
           D Y+K G +  A++VF  M +R+ + W+ L+ G + +G   E L LF  M   G 
Sbjct: 349 DMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 403



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 178/376 (47%), Gaps = 16/376 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMS---YAHNIFSHVQDPNIFTWNTMIR 116
           +QVH   +R G   +      +   A+V +   +     A  +F  +   ++ +WN  I 
Sbjct: 225 RQVHGAVVRTGYEKD-----VFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFIS 279

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G     +   A+EL  +M  SG+ P+  T   +LKA +      +G Q H   ++   + 
Sbjct: 280 GCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF 339

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
             FV   LV MYA  G + DA KVF+ M  RDL+ WN++I+G + +G+  E L+LF  M 
Sbjct: 340 DEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMR 399

Query: 237 SEGVEPD--GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
            EG++ D    T+ S+  + A   A+   R+ H    K+GL  + +V N L+D Y KCG 
Sbjct: 400 KEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQ 459

Query: 295 IIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354
           +  A +VF+E R  + +S +T++  L+    G++A++LF +M   G  P       +L A
Sbjct: 460 LDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNA 519

Query: 355 CSHCGMVDEGFSYFKRM-KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           C+     ++G      + K ++     +     +V    + G ++ A        +P   
Sbjct: 520 CTSLSAYEQGKQVHAHLIKRQF--TSDVFAGNALVYAYAKCGSIEDADMAFSG--LPERG 575

Query: 414 VI-WRTLLGACTIHGH 428
           ++ W  ++G    HGH
Sbjct: 576 IVSWSAMIGGLAQHGH 591



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 19/300 (6%)

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G   HS  +++G   L    N L+ +Y+       A  VF+ + +   V+W+S++  +++
Sbjct: 23  GAHLHSHLLKSGL--LAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG P +AL  FR M   GV  + + +  +     +   +  G + H       L  +V V
Sbjct: 81  NGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGAQVHALAVATRLVHDVFV 137

Query: 282 NNALLDFYSKCGIIIAAQRVFREM----RKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
            NAL+  Y   G++  A+R+F E      +RNAVSW+T++     N    +A+ +F+EM 
Sbjct: 138 ANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMV 197

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
             G  P E  F  V+ AC+    ++ G      +    G    +     +VD+  + G +
Sbjct: 198 WSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV-RTGYEKDVFTANALVDMYSKLGDI 256

Query: 398 KQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457
           + A    + M    + V W   +  C  HGH       R+  L L+ K SG   L+ N++
Sbjct: 257 EMAATVFEKM-PAADVVSWNAFISGCVTHGHD-----HRALELLLQMKSSG---LVPNVF 307



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 20/184 (10%)

Query: 249 SLFSACAELG---ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           ++ SA A  G   +L  G   H+++ K GL      +N LL  YS+C +  AA+ VF E+
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLL--AGFSNHLLTLYSRCRLPSAARAVFDEI 63

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS---HCGMVD 362
                VSWS+LV   + NG  ++AL  F+ M  G  VP     + V+  C+     G   
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMR-GRGVPCNEFALPVVLKCAPDVRFGAQV 122

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY----EYIQNMLMPPNAVIWRT 418
              +   R+  +  +         +V + G  G+V +A     EY+  +    NAV W T
Sbjct: 123 HALAVATRLVHDVFVA------NALVAVYGGFGMVDEARRMFDEYV-GVGGERNAVSWNT 175

Query: 419 LLGA 422
           ++ A
Sbjct: 176 MISA 179


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/525 (40%), Positives = 323/525 (61%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLK 151
           + YA  +F  +   N  TW+ +I G+        A  L+  M V G+   + T     L+
Sbjct: 255 LVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALR 314

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             + LAD+RMG Q H++  ++G  + +   NSL+ MYA  G + +A  +F+ ++ +D ++
Sbjct: 315 VCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS 374

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           + ++++G+  NGK  EA  +F++M +  V+PD  TMVSL  AC+ L AL  GR +H  V 
Sbjct: 375 YGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVI 434

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             GL+   ++ N+L+D Y+KCG I  +++VF +M  R+ VSW+T++ G  ++G GKEA  
Sbjct: 435 IRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATT 494

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF  M+  GF P +VTF+ ++ ACSH G+V EG  +F  M  +YGI+P++EH+ CMVDLL
Sbjct: 495 LFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLL 554

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            R G + +AY++IQ+M +  +  +W  LLGAC IH +  + +     + +L P+ +G++V
Sbjct: 555 ARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFV 614

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+++   R+    EVR     +  KK+PG S +E+   +  F  GD+SHP + +I+ 
Sbjct: 615 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYH 674

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L  I   +K  GY   T  V  D+EEEEKE AL YHSEK+AIAF +++      + V K
Sbjct: 675 ELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTK 734

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH AIK ++ V +R I+VRD +RFHHFK+G CSC D+W
Sbjct: 735 NLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +  P+   +N +IR Y+       A++LY  M    + P+ +T+PF+LKA
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S LAD+  G   H+ A   G  + +FV  +L+ +Y        A  VF  M  RD+VAW
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 213 NSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           N+++ G+A++G  + A+    +M    G+ P+  T+VSL    A+ GAL  G   H Y  
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCL 228

Query: 272 KVGLSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           +  L  N   V +  ALLD Y+KC  ++ A RVF  M  RN V+WS L+ G  +     E
Sbjct: 229 RAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTE 288

Query: 329 ALELFKEMEIGGFVPGEVTFVG-VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           A  LFK+M + G      T V   L  C+    +  G +    +  + GI   +     +
Sbjct: 289 AFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMG-TQLHALLAKSGIHADLTAGNSL 347

Query: 388 VDLLGRAGLVKQA 400
           + +  +AGL+ +A
Sbjct: 348 LSMYAKAGLINEA 360



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P  H  PF   A+ +L     G  +H V     ++  +         + A G +  A +V
Sbjct: 4   PRGHLRPFSTAAV-RLRRPPSGSISHEVKDNKEWQQEL-------EQHIARGQLALARQV 55

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ +   D  A+N++I  ++  G  + A+ L+R M    V P+ YT   +  AC+ L  L
Sbjct: 56  FDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADL 115

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H +   VGL  ++ V+ AL+D Y +C     A  VF +M  R+ V+W+ ++ G 
Sbjct: 116 CAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGY 175

Query: 321 AVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           A +G    A+    +M+  GG  P   T V +L   +  G + +G S
Sbjct: 176 ANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS 222


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/441 (43%), Positives = 273/441 (61%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           S   ++N+L++MY   G +++A KVF+ M   D  +W ++I     N +  EAL LF  M
Sbjct: 9   SNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRM 68

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
             EG+ P   T+ S+ +ACA  GAL +G++ H+ +   G   +V    ALLD Y+KCG +
Sbjct: 69  NLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSL 128

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             + +VF  M  RN+VSW+ ++  LA +G G EALELFKEM + G V    TF+ VL AC
Sbjct: 129 ECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRAC 188

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G++ E   +F  M ++Y I P   H+   +D +GRAG ++ A E I +M   P  V 
Sbjct: 189 SHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVT 248

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W+TLL AC IH  +  A      L +L P+ S  Y LL N+YA  +R+ +   VR++M  
Sbjct: 249 WKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTD 308

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
             +KK PG S +E+ N+V EF  GDR+HP  +EI   L ++  +++  GYVP T++V   
Sbjct: 309 RGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHA 368

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           + EEEKE  +  HSEK+AIAF L+ T PGTP+ +VKNLRVC+DCH A K+I+K+  R IV
Sbjct: 369 VNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIV 428

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD  RFHHF+DG CSC+DYW
Sbjct: 429 VRDTHRFHHFEDGQCSCKDYW 449



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F  +  P+ F+W  MI    E+   L A+EL+ +M++ GI P + T   +L A
Sbjct: 27  LEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNA 86

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            +    +++G+Q HS    +GF S V  Q +L+ MYA  G ++ + KVF  M  R+ V+W
Sbjct: 87  CACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSW 146

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR-AHTYVW 271
            ++I   A +G+ +EAL LF+EM  EG+  D  T + +  AC+  G +       H+ V 
Sbjct: 147 TAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVE 206

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
              ++         LD   + G +  A+ +   M      V+W TL+
Sbjct: 207 DYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLL 253



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
           S N  + NALL+ Y +CG +  A++VF  M   +A SW+ ++     N    EALELF  
Sbjct: 8   SSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHR 67

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M + G  P  VT   VL AC+  G +  G     R+ D  G    +     ++D+  + G
Sbjct: 68  MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCG 126

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            ++ + +    M    N+V W  ++ A   HG 
Sbjct: 127 SLECSSKVFTAM-ETRNSVSWTAMIAALAQHGQ 158


>gi|413955987|gb|AFW88636.1| hypothetical protein ZEAMMB73_169634 [Zea mays]
          Length = 555

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 324/558 (58%), Gaps = 37/558 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           MSY + +  H         N+++R   E  +P   +  YS + H +   PD  TY FLL+
Sbjct: 1   MSYTNCLKKHPYRIFFRYGNSILRASLEKGSPQKLLMDYSTLLHFTAFCPDYRTYAFLLR 60

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC------------- 198
           A +K +D+    + H    + G  S   +   L  +Y + G++ +AC             
Sbjct: 61  ACAKCSDLYAAMEIHCHLTKVGLLSKQHITPPLFKLYISHGYMLEACELLWSMLEWNTDP 120

Query: 199 --------------------KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                               ++F+ M  +DL++WNS+I G   +    EA+ +F  + S 
Sbjct: 121 FHGNLMLMGFLKSGRLDKAYQIFKRMPVKDLISWNSMIAGAVRSSHLKEAMNIFSRLVSS 180

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+ PD ++  S+ SACA  GA   G   H  + ++G+  N  +++AL+D Y+KCG I  A
Sbjct: 181 GLVPDCFSFSSVLSACARAGARRYGVWVHHLMTELGVEMNHILSSALVDMYAKCGRIDVA 240

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             +F +++  +   W+T++ GLA +G G + + LF +M+    VP  VTFV +L ACS C
Sbjct: 241 TEIFNKVKGNHISVWNTMISGLASHGLGSDVVILFHKMKSEELVPDGVTFVALLTACSRC 300

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           GMV+E   YF+ M  EY I P++EH+G +VD L RAGL+ +AYE + +M + P+ VIWR 
Sbjct: 301 GMVEEARHYFRSMTTEYSITPEVEHYGALVDTLSRAGLLDEAYELVMSMNVKPDVVIWRA 360

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC  + H+ + E   +T+  +    SGDY LLSN+Y+   RW + +EV +   +++V
Sbjct: 361 LLSACRRYRHTKLGE---ATIEHMACHGSGDYTLLSNIYSSANRWNDSEEVWKQRKQKKV 417

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +KT G S VELG    EF  GDRSHP TE+I+ +L  + ++ K+EGY P TE V  D+ E
Sbjct: 418 RKTKGLSWVELGGSTHEFKAGDRSHPDTEDIYVVLHGLCRRAKVEGYAPLTELVTKDVSE 477

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EE+E+ L++HSEK+A+A+ ++ T PGT + V KNL+VC+DCH  +K+ISKV  R I++RD
Sbjct: 478 EEREENLTFHSEKLAVAYSVLKTGPGTEIMVSKNLQVCSDCHEWMKIISKVLCRVIILRD 537

Query: 599 RSRFHHFKDGHCSCRDYW 616
           R RFH F+ G CSC+DYW
Sbjct: 538 RVRFHRFESGWCSCKDYW 555


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 345/603 (57%), Gaps = 37/603 (6%)

Query: 49  LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI 108
             V    + K ++VHA  IR G+  N   +G  L+  + + S  ++ A ++F  + + + 
Sbjct: 313 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLV-NMYAKSGAIADACSVFELMVEKDS 371

Query: 109 FTWNTMIRGYAESANPLLAVELYSKM---------HVSGIKPDTH--------------- 144
            +WN++I G  ++     A E++S M          V G   D+                
Sbjct: 372 VSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431

Query: 145 --------TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196
                   T+  +L A+S L+   +  Q H++ ++        + N+L+  Y   G + +
Sbjct: 432 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 491

Query: 197 ACKVFELMSE-RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
             K+F  MSE RD V+WNS+I+G+  N   ++A+ L   M  +G   D +T  ++ SACA
Sbjct: 492 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 551

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
            +  L  G   H    +  L  +V V +AL+D YSKCG I  A R F  M  RN  SW++
Sbjct: 552 SVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 611

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           ++ G A +G G++AL+LF  M + G  P  VTFVGVL ACSH G V+EGF +FK M + Y
Sbjct: 612 MISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVY 671

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG--HSAIAE 433
            + P++EHF CMVDLLGRAG + +  ++I +M M PN +IWRT+LGAC      ++ +  
Sbjct: 672 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 731

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
            A   LL+LEP+++ +YVLL+N+YA  ++W +V + R  M +  VKK  G S V + + V
Sbjct: 732 RAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGV 791

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
             F  GD+ HP+ + I+  L E+ +K++  GY+P+T+    D+E E KE+ LSYHSEKIA
Sbjct: 792 HVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIA 851

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +AF+L   +   P+R++KNLRVC DCH A   ISK+  R+IV+RD +RFHHF+DG CSC 
Sbjct: 852 VAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCG 910

Query: 614 DYW 616
           DYW
Sbjct: 911 DYW 913



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 171/396 (43%), Gaps = 56/396 (14%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI----KPDTHTYPFLLK 151
           A ++F  +   N  +WN++I  Y+   + + A +L+S M   G+    KP+     F + 
Sbjct: 257 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL 316

Query: 152 AISKLADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD-- 208
              +    R G + H+  IR G  ++ V + N LV+MYA  G + DAC VFELM E+D  
Sbjct: 317 EEGR----RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 372

Query: 209 -----------------------------LVAWNSVINGFA-SNGKPNEALTLFREMASE 238
                                         V+WNSVI   + S    ++A+  F +M   
Sbjct: 373 SWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 432

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G      T +++ SA + L    +  + H  V K  LSD+  + NALL  Y KCG +   
Sbjct: 433 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 492

Query: 299 QRVFREMRK-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           +++F  M + R+ VSW++++ G   N    +A++L   M   G      TF  +L AC+ 
Sbjct: 493 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACAS 552

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEH----FGCMVDLLGRAGLVKQAYEYIQNMLMP-PN 412
              ++ G           GI   +E        +VD+  + G +  A  + +  LMP  N
Sbjct: 553 VATLERGMEVHA-----CGIRACLESDVVVGSALVDMYSKCGRIDYASRFFE--LMPLRN 605

Query: 413 AVIWRTLLGACTIHGHS--AIAEIARSTLLQLEPKH 446
              W +++     HGH   A+    R  L    P H
Sbjct: 606 VYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 641



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 145/285 (50%), Gaps = 14/285 (4%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +++H  SI++G  + N  L   LI   V +   +  A  +F  + + N+ TW  +I GY 
Sbjct: 119 RELHLQSIKYGF-VGNLFLSNTLINIYVRIG-DLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI--SKLADVRMGEQTHSVAIRNGFESL 177
           ++  P  A   +  M  +G  P+ + +   L+A   S  +  ++G Q H +  +  + S 
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 178 VFVQNSLVHMYAA-FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
           V V N L+ MY +      DA  VF+ +  R+ ++WNS+I+ ++  G    A  LF  M 
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRR----AHTYVWKVGLSDN-VNVNNALLDFYSK 291
            EG+   G++      A +E   L  GRR     H +V + GL+DN V + N L++ Y+K
Sbjct: 297 KEGL---GFSFKP-NDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 352

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
            G I  A  VF  M ++++VSW++L+ GL  N   ++A E+F  M
Sbjct: 353 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLM 397



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 3/181 (1%)

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           + H  +I+ GF   +F+ N+L+++Y   G +  A K+F+ MS R+LV W  +I+G+  NG
Sbjct: 120 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 179

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELG--ALALGRRAHTYVWKVGLSDNVNV 281
           KP+EA   FR+M   G  P+ Y   S   AC E G     LG + H  + K     +V V
Sbjct: 180 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVV 239

Query: 282 NNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
            N L+  Y  C      A+ VF  +  RN++SW++++   +  G    A +LF  M+  G
Sbjct: 240 CNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEG 299

Query: 341 F 341
            
Sbjct: 300 L 300



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R  H    K G   N+ ++N L++ Y + G + +AQ++F EM  RN V+W+ L+ G   N
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           G   EA   F++M   GF+P    F   L AC   G
Sbjct: 179 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 56/317 (17%)

Query: 47  TLLQVCAS--SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           T+L  CAS  +  +  +VHA  IR  +  ++  +G  L+  + S    + YA   F  + 
Sbjct: 545 TILSACASVATLERGMEVHACGIRACLE-SDVVVGSALV-DMYSKCGRIDYASRFFELMP 602

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
             N+++WN+MI GYA   +   A++L+++M + G  PD  T+  +L A S          
Sbjct: 603 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACS---------- 652

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H   +  GFE                 H K   +V+ L S R +  ++ +++     GK
Sbjct: 653 -HVGFVEEGFE-----------------HFKSMSEVYRL-SPR-VEHFSCMVDLLGRAGK 692

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGA--LALGRRAHTYVWKVGLSDNVNVN 282
            +E       M    ++P+     ++  AC         LGRRA   + ++   + VN  
Sbjct: 693 LDEVGDFINSMP---MKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNY- 748

Query: 283 NALLDFYS---KCGIIIAAQRVFRE--MRKRNAVSWSTLVVGLAVNGFG----------- 326
             L + Y+   K   +  A+   +E  ++K    SW T+  G+ V   G           
Sbjct: 749 VLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIY 808

Query: 327 KEALELFKEMEIGGFVP 343
            +  EL ++M   G++P
Sbjct: 809 DKLRELNRKMRDAGYIP 825


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 304/542 (56%), Gaps = 35/542 (6%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
            WN MI GY        A+ L  KM   GI+ D  TY  ++ A + +   +MG+Q H+  
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 170 IRNGFES----LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV---------- 215
           ++N         + V N+L+ +Y     V +A K+F  M  R+++ WN++          
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 216 ---------------------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
                                I+G A NG  +E L LF++M  +G EP  +      +AC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           + LGAL  GR+ H  +  +G   +++V NA++  Y+KCG++ AA+ VF  M   + VSW+
Sbjct: 436 SVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWN 495

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           +++  L  +G G +A+ELF +M   G  P  +TF+ VL ACSH G+V++G  YF  M + 
Sbjct: 496 SMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLES 555

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YGI P  +H+  MVDL  RAG+   A   I +M   P A +W  LL  C IHG+  +   
Sbjct: 556 YGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   L +L P++ G YVLLSN+YA   RW +V +VR+ M  + V+K P  S +E+ N+V 
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
            F + D  HP+   ++  L ++  ++K  GY+P T+ V  D+E E+KE ALS HSEK+A+
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAV 735

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
            F ++   P   VRV KN+R+C DCH A K +SKV  REI+VRDR RFHHFK+G CSCRD
Sbjct: 736 GFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRD 795

Query: 615 YW 616
           YW
Sbjct: 796 YW 797



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 80/399 (20%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSVA 169
           +N MI GYA + +   A+EL+  M     +PD  T+  +L A+   + + +   Q H   
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAV 174

Query: 170 IRNGFESLVF-VQNSLVHMYAA----------------------------------FGHV 194
           ++ G   +   V N+L+ +Y                                     G+V
Sbjct: 175 VKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYV 234

Query: 195 KD-----ACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
           ++     A +VFE M E    AWN++I+G+   G   EALTL R+M   G++ D  T  +
Sbjct: 235 RNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294

Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDN----VNVNNALLDFYSKCGIIIAAQRVFREM 305
           + SACA +G+  +G++ H Y+ K  L+ N    ++V+NAL+  Y K   +  A+++F  M
Sbjct: 295 IISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 306 RKRNAVSW-------------------------------STLVVGLAVNGFGKEALELFK 334
             RN ++W                               + ++ GLA NGFG E L+LFK
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M + GF P +  F G L ACS  G ++ G     ++    G    +     M+ +  + 
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYAKC 473

Query: 395 GLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIA 432
           G+V+ A      + MP  + V W +++ A   HGH   A
Sbjct: 474 GVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKA 510



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A + F  +   N+ T   MI G A++      ++L+ +M + G +P    +   L A
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L  +  G Q H+  +  G+ES + V N+++ MYA  G V+ A  VF  M   DLV+W
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           NS+I     +G   +A+ LF +M  EGV PD  T +++ +AC+  G +  GR   ++ + 
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNG---FGK 327
             G++   +    ++D + + G+   A+ V   M  K  A  W  L+ G  ++G    G 
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 328 EALE-LFKEM 336
           EA E LFK M
Sbjct: 615 EAAEQLFKLM 624



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 36/308 (11%)

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL----VFVQ 181
           LA  +++ M  SG KP  H    LL+   K ++V        V  R  FE +       +
Sbjct: 31  LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNV--------VYARQLFEEIPNPDAIAR 82

Query: 182 NSLVHMYAAFGHVKDACKVFE--LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            +L+  Y A G+++   ++F    +  RD V +N++I G+A NG  + AL LFR M  + 
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 240 VEPDGYTMVSLFSACAE-LGALALGRRAHTYVWKVGLSD-NVNVNNALLDFYSK------ 291
             PD +T  S+ SA    +G      + H  V K G+   + +V NALL  Y K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 292 --CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM--EIGGFVPGEVT 347
             C  +++A+++F EM KR+ ++W+T++ G   N     A E+F+ M   +G        
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA------A 256

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG---LVKQAYEYI 404
           +  ++    HCG   E  +  ++M+   GI      +  ++      G   + KQ + YI
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMR-FLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 405 QNMLMPPN 412
               + PN
Sbjct: 316 LKNELNPN 323


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 313/530 (59%), Gaps = 15/530 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV---------SGIKPDTHTY 146
           + ++F  + D ++ +W ++I G  ++     AV ++ ++ V          G+  D+   
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLL 91

Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
             ++ A SKL    + E  H + I+ GFE  V V N+L+  YA FG +  A KVF+ M+E
Sbjct: 92  GCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGMNE 150

Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
            D   WNSVI  +A NG   EA ++F +M   G     +   ++       GAL LG+  
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSG----NFRYNAVIMDXGLSGALQLGKCI 206

Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
           H  V K+ L D+V V  +++D Y KC  +  A++ F  M+ +N  SW+ +V G  ++G  
Sbjct: 207 HHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRA 266

Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
           KEA+E+F +M   G  P  +TFV VL ACSH GM+ EG  +F RMK E+ + P IEH+ C
Sbjct: 267 KEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLC 326

Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
           MVDLLGRAG +   Y  I+ M   P+ +IW +LLGAC IH +  + EI+   L +L+  +
Sbjct: 327 MVDLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSN 385

Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
            G YVLLSN+YA   RW  V+ +R  M    + K PG S+VEL  R+    +GD+ HPQ 
Sbjct: 386 CGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQH 445

Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTP 566
           E+I+  L +   KL+  GY+P    V  D++EEEK   L  HSEK+A+AF ++N+ PG+ 
Sbjct: 446 EKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSI 505

Query: 567 VRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           + ++KNLR+C DC++ IKLI KV +REIVVRD  RFHHFK+G CSC DYW
Sbjct: 506 IHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 51/280 (18%)

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM---------ASEGVE 241
           FG+  D+  +F+ + +R +V+W S+I G   N +  +A+ +F+E+         + +GV 
Sbjct: 28  FGN--DSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVF 85

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            D   +  + SA ++LG   +    H  V K G    V V N L+D Y+K G +  A +V
Sbjct: 86  VDSVLLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KV 144

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM---------------------EIGG 340
           F  M + +   W++++   A NG   EA  +F +M                     ++G 
Sbjct: 145 FDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGK 204

Query: 341 FVPGEV--------TFVG--VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
            +  +V         FVG  ++     C  V+     F  MK     +  ++ +  MV  
Sbjct: 205 CIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMK-----VKNVKSWTAMVAG 259

Query: 391 LGRAGLVKQAYEYIQNML---MPPNAVIWRTLLGACTIHG 427
            G  G  K+A E    M+   + PN + + ++L AC+  G
Sbjct: 260 YGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAG 299


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 301/507 (59%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +W+ MI+G A++     A+E + +M + G+K D + +  +L A   L  +  G Q H+  
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           IR   +  ++V ++L+ MY     +  A  VF+ M ++++V+W +++ G+   G+  EA+
Sbjct: 294 IRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
            +F +M   G++PD YT+    SACA + +L  G + H      GL   + V+N+L+  Y
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLY 413

Query: 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
            KCG I  + R+F EM  R+ VSW+ +V   A  G   EA++LF +M   G  P  VT  
Sbjct: 414 GKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLT 473

Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409
           GV+ ACS  G+V++G  YF+ M +EYGI+P   H+ CM+DL  R+G +++A  +I  M  
Sbjct: 474 GVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPF 533

Query: 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469
            P+A+ W TLL AC   G+  I + A  +L++L+P H   Y LLS++YA + +W  V ++
Sbjct: 534 RPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQL 593

Query: 470 RRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRT 529
           RR M ++ V+K PG S ++   ++  F   D S P +++I+A L E+ +K+   GY P T
Sbjct: 594 RRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDT 653

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
             V  D+EE  K   L+ HSE++AIAF L+    G P+RV KNLRVC DCH A K IS V
Sbjct: 654 SFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSV 713

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
             REI+VRD  RFH FKDG CSC D+W
Sbjct: 714 TGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 194/418 (46%), Gaps = 34/418 (8%)

Query: 62  VHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAES 121
           ++A  +  G+P  N      L+ A  S S  +S     F  + D +  TWN +I GY+ S
Sbjct: 55  IYARRVFDGIPQPNLFSWNNLLLA-YSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLS 113

Query: 122 ANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV 180
                AV+ Y+ M        T  T   +LK  S    V +G+Q H   I+ GFES + V
Sbjct: 114 GLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLV 173

Query: 181 QNSLVHMYAAFGHVKDACKVF------------ELMS------------------ERDLV 210
            + L+ MY+  G + DA KVF             LM                   E+D V
Sbjct: 174 GSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSV 233

Query: 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYV 270
           +W+++I G A NG   EA+  FREM  EG++ D Y   S+  AC  LGA+  GR+ H  +
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
            +  L D++ V +AL+D Y KC  +  A+ VF  M+++N VSW+ +VVG    G   EA+
Sbjct: 294 IRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
           ++F +M+  G  P   T    + AC++   ++EG S F       G++  I     +V L
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEG-SQFHGKAITAGLIHYITVSNSLVTL 412

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
            G+ G +  +      M +  + V W  ++ A    G +  A      ++QL  K  G
Sbjct: 413 YGKCGDIDDSTRLFNEMNV-RDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG 469



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 158/323 (48%), Gaps = 14/323 (4%)

Query: 37  PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYA 96
           P  SV+  C  L  +     +  +Q+HA  IR  +  ++  +G  LI         + YA
Sbjct: 269 PFGSVLPACGGLGAI-----NDGRQIHACIIRTNLQ-DHIYVGSALIDMYCKCKC-LHYA 321

Query: 97  HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
             +F  ++  N+ +W  M+ GY ++     AV+++  M  SGI PD +T    + A + +
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
           + +  G Q H  AI  G    + V NSLV +Y   G + D+ ++F  M+ RD V+W +++
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMV 441

Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVWKVGL 275
           + +A  G+  EA+ LF +M   G++PDG T+  + SAC+  G +  G+R     + + G+
Sbjct: 442 SAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGI 501

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVNG---FGKEALE 331
             +    + ++D +S+ G I  A      M  R +A+ W+TL+      G    GK A E
Sbjct: 502 VPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAE 561

Query: 332 LFKEMEIGGFVPGEVTFVGVLYA 354
               +E+    P   T +  +YA
Sbjct: 562 SL--IELDPHHPAGYTLLSSIYA 582



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 35/233 (15%)

Query: 167 SVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           S+  R  F+ +    +F  N+L+  Y+  GH+ +  + FE + +RD V WN +I G++ +
Sbjct: 54  SIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLS 113

Query: 223 GKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           G    A+  +  M  +        T++++    +  G ++LG++ H  V K+G    + V
Sbjct: 114 GLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLV 173

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRN------------------------------AV 311
            + LLD YSK G I  A++VF  +  RN                              +V
Sbjct: 174 GSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSV 233

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364
           SWS ++ GLA NG  KEA+E F+EM+I G    +  F  VL AC   G +++G
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDG 286


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 327/566 (57%), Gaps = 15/566 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY- 118
           K +H  +++ G+ L+   +G  L+     +   +  A  IF  + DPN+  +N MI G+ 
Sbjct: 243 KMLHGCAVKLGLDLDVV-VGTALLDTYAKIG-DLEDATKIFKLMPDPNVVMYNAMIAGFL 300

Query: 119 ------AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
                  E AN   A+ L+ +M   G+KP   T+  +LKA S +     G+Q H+   + 
Sbjct: 301 QMETMADEFANE--AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKY 358

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
             +S  F+ N+LV +Y+  G ++D  K F    + D+V+W S+I G   NG+    LTLF
Sbjct: 359 NLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLF 418

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            E+   G +PD +T+  + SACA L A+  G + H Y  K G+ +   + N+ +  Y+KC
Sbjct: 419 HELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKC 478

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I +A   F+E +  + VSWS ++   A +G  KEA++LF+ M+  G  P  +TF+GVL
Sbjct: 479 GDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVL 538

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+V+EG  YF+ MK ++GI P ++H  C+VDLLGRAG + +A  +I +     +
Sbjct: 539 VACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGD 598

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            V+WR+LL AC +H  +   +     +++LEP+ +  YVLL N+Y      +   E+R  
Sbjct: 599 PVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNL 658

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M    VKK PG S +E+GN V  F  GDRSHP ++ I+  L E+ +++K   Y+   E +
Sbjct: 659 MKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI--DEKL 716

Query: 533 FADIEEEEKED--ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            +D  E + +D   +SYHSEK+A+ F +++     PVRV+KNLR C  CH  +KL S++ 
Sbjct: 717 VSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLE 776

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
           +REI++RD  RFH F+DG CSC DYW
Sbjct: 777 NREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 164/349 (46%), Gaps = 23/349 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + +A  +F    + +  +WN++I GY    +    + L  KM   G+  +++     LKA
Sbjct: 171 IDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKA 230

Query: 153 ISK--LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
                 + +  G+  H  A++ G +  V V  +L+  YA  G ++DA K+F+LM + ++V
Sbjct: 231 CGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVV 290

Query: 211 AWNSVINGF-----ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            +N++I GF      ++   NEA+ LF EM S G++P  +T  S+  AC+ + A   G++
Sbjct: 291 MYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ 350

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  ++K  L  +  + NAL++ YS  G I    + F    K + VSW++L+VG   NG 
Sbjct: 351 IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQ 410

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385
            +  L LF E+   G  P E T   +L AC++   V  G          Y I   I +F 
Sbjct: 411 FEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSG-----EQIHAYAIKTGIGNFT 465

Query: 386 -------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
                  CM    G        ++  +N    P+ V W  ++ +   HG
Sbjct: 466 IIQNSQICMYAKCGDIDSANMTFKETKN----PDIVSWSVMISSNAQHG 510



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 132/268 (49%), Gaps = 7/268 (2%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   N+ +WN++I GY +       + L+ +  +S ++ D  T+   L    +
Sbjct: 73  AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGR 132

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+R+G   H++   +G    V + NSL+ MY   G +  A  VFE   E D V+WNS+
Sbjct: 133 TLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSL 192

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE--LGALALGRRAHTYVWKV 273
           I G+   G  +E L L  +M   G+  + Y + S   AC      ++  G+  H    K+
Sbjct: 193 IAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKL 252

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL-----AVNGFGKE 328
           GL  +V V  ALLD Y+K G +  A ++F+ M   N V ++ ++ G        + F  E
Sbjct: 253 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 312

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACS 356
           A+ LF EM+  G  P E TF  +L ACS
Sbjct: 313 AMYLFFEMQSRGMKPSEFTFSSILKACS 340



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 138 GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197
           G+  D+ TY  L++  ++   +  G+  H   I+  F+  +F+ N+L++MY   G    A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 198 CKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257
            K+F+ M +R++V+WNS+I+G+   G  +E + LF+E     +  D +T  +  S C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317
             L LGR  H  +   GL   V + N+L+D Y KCG I  A+ VF    + ++VSW++L+
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-------HCGMVDEGFSYFKR 370
            G    G   E L L  +M   G           L AC         CG +  G +    
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAV--- 250

Query: 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGA 422
              + G+   +     ++D   + G ++ A +  +  LMP PN V++  ++  
Sbjct: 251 ---KLGLDLDVVVGTALLDTYAKIGDLEDATKIFK--LMPDPNVVMYNAMIAG 298


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  IF  +++ N+ TW TMI GY ++    +A +L+  M     +    ++  +L   + 
Sbjct: 191 ARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTL 246

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +   E+   V         V   N+++  +   G +  A +VF+LM +RD   W  +
Sbjct: 247 SGRIEDAEEFFEVMPMKP----VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I  +   G   EAL LF +M  +GV P   +++S+ S CA L +L  GR+ H ++ +   
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
            D+V V + L+  Y KCG ++ A+ VF     ++ + W++++ G A +G G+EAL++F E
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G +P +VT + +L ACS+ G ++EG   F+ M+ ++ + P +EH+ C VD+LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
            V +A E I++M + P+A +W  LLGAC  H    +AE+A   L + EP ++G YVLLS+
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSS 542

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD-RSHPQTEEIHAMLA 514
           + A   +W +V  VR+ M    V K PG S +E+G +V  F  G  ++HP+   I  ML 
Sbjct: 543 INASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLE 602

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           +    L+  GY P   +V  D++EEEK D+LS HSE++A+A+ L+    G P+RV+KNLR
Sbjct: 603 KTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLR 662

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH AIKLISKV  REI++RD +RFHHF +G CSCRDYW
Sbjct: 663 VCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A  +F  ++D +  TW  MI+ Y      L A++L+++M   G++P   +   +L  
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            + LA ++ G Q H+  +R  F+  V+V + L+ MY   G +  A  VF+  S +D++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA-HTYVW 271
           NS+I+G+AS+G   EAL +F EM S G  P+  T++++ +AC+  G L  G     +   
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMES 460

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
           K  ++  V   +  +D   + G +  A  +   M  K +A  W  L+
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALL 507



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 141/353 (39%), Gaps = 70/353 (19%)

Query: 81  YLIYAIVSLSFPMSY---------AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131
           YL    V+ SF +S          A   F  +Q   I +WN+++ GY  +  P  A +L+
Sbjct: 12  YLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLF 71

Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
            +M                                        E  V   N LV  Y   
Sbjct: 72  DEMS---------------------------------------ERNVVSWNGLVSGYIKN 92

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
             + +A  VFELM ER++V+W +++ G+   G   EA +LF  M     E +  +   +F
Sbjct: 93  RMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP----ERNEVSWTVMF 148

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
               + G +   R+ +     + + D V   N ++    + G +  A+ +F EMR+RN V
Sbjct: 149 GGLIDDGRIDKARKLYDM---MPVKDVVASTN-MIGGLCREGRVDEARLIFDEMRERNVV 204

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W+T++ G   N     A +LF+ M        EV++  +L   +  G +++   +F+  
Sbjct: 205 TWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIEDAEEFFE-- 258

Query: 372 KDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
                +MP      C  M+   G  G + +A      M    NA  WR ++ A
Sbjct: 259 -----VMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNAT-WRGMIKA 305



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 118/266 (44%), Gaps = 26/266 (9%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  + + N+ +W  M++GY +      A  L+ +M      P+ +   + +     
Sbjct: 98  ARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM------PERNEVSWTVMFGGL 151

Query: 156 LADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           + D R+ +       R  ++ +    V    +++      G V +A  +F+ M ER++V 
Sbjct: 152 IDDGRIDKA------RKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVT 205

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR-RAHTYV 270
           W ++I G+  N + + A  LF E+  E  E    +M+        LG    GR       
Sbjct: 206 WTTMITGYRQNNRVDVARKLF-EVMPEKTEVSWTSML--------LGYTLSGRIEDAEEF 256

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330
           ++V     V   NA++  + + G I  A+RVF  M  R+  +W  ++      GF  EAL
Sbjct: 257 FEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEAL 316

Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACS 356
           +LF +M+  G  P   + + +L  C+
Sbjct: 317 DLFAQMQKQGVRPSFPSLISILSVCA 342



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 57/259 (22%)

Query: 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
            G + +A K F+ +  + + +WNS+++G+ SNG P EA  LF EM+              
Sbjct: 30  IGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER------------ 77

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA 310
                                      NV   N L+  Y K  +I+ A+ VF  M +RN 
Sbjct: 78  ---------------------------NVVSWNGLVSGYIKNRMIVEARNVFELMPERNV 110

Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370
           VSW+ +V G    G   EA  LF  M     V   V F          G++D+G     +
Sbjct: 111 VSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMF---------GGLIDDG--RIDK 159

Query: 371 MKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
            +  Y +MP  +      M+  L R G V +A   I + +   N V W T++   T +  
Sbjct: 160 ARKLYDMMPVKDVVASTNMIGGLCREGRVDEA-RLIFDEMRERNVVTWTTMI---TGYRQ 215

Query: 429 SAIAEIARSTLLQLEPKHS 447
           +   ++AR  L ++ P+ +
Sbjct: 216 NNRVDVARK-LFEVMPEKT 233


>gi|357119982|ref|XP_003561711.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Brachypodium distachyon]
          Length = 555

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 322/558 (57%), Gaps = 37/558 (6%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           MSY + +  H         N+++R   E  +P  ++  Y  M + +   PD  TY  LL+
Sbjct: 1   MSYTNCLKKHPTRLFFPYANSILRASLEKGSPQKSLMDYGTMLNSTTFCPDYRTYGILLR 60

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF-------------------- 191
           A  K +D+    Q HS   + G      +   L+ +Y  +                    
Sbjct: 61  ACLKYSDIYAAMQIHSRLTKVGLLRNQHIIAPLLRLYIDYDCMTEARELFWLMLEWSTDP 120

Query: 192 -------------GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
                        G +  A ++F+ M  +D+V+WNS+I G   +    +A+ LF  + + 
Sbjct: 121 FHGNLMLTGFLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNS 180

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G+ PDG++  S+ SACA  GAL  G   H  + ++G+  N  + +AL+D Y+KCG I  +
Sbjct: 181 GLVPDGFSFSSVLSACARAGALFYGVWVHRLMAELGVEKNNILISALVDMYAKCGRIDVS 240

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
             +F  +++ +   W+T++  LA +G G++ + LF  ME  G VP  VTFV +L ACSHC
Sbjct: 241 VEIFNTVKRNHVPMWNTMIGSLAAHGLGQDVVVLFHRMEHAGVVPDGVTFVALLTACSHC 300

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           GMV+E   YF+ M  +Y I PK+EH+G MVD L RAGL+ +AY  +++M++ P+AVIWR 
Sbjct: 301 GMVEEARQYFEAMTTKYYITPKVEHYGAMVDTLSRAGLLDEAYNLVRSMVVKPDAVIWRA 360

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LL AC  H  + + EI   T+ Q+  + SGDY LLSN+Y+   RW++ + V +   K++V
Sbjct: 361 LLSACRRHHQTKLGEI---TIEQMVCQGSGDYTLLSNIYSSINRWVDSENVWKERKKKKV 417

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           +K  G S VELG    EF  GDRSHP T++I+ +L  ++KK K EGY P TE V  D+  
Sbjct: 418 RKNKGLSWVELGGSTHEFKAGDRSHPDTDDIYRVLHGLSKKAKAEGYSPSTELVMKDVSH 477

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EE+E+ L++HSEK+A+A+ ++ T PGT + V KNL+ C DCH  IK+ISKV  R I++RD
Sbjct: 478 EEREENLTFHSEKLAVAYSVLKTGPGTEIMVSKNLQTCGDCHEWIKIISKVLCRVIIMRD 537

Query: 599 RSRFHHFKDGHCSCRDYW 616
           R+RFH F+ G CSC+DYW
Sbjct: 538 RARFHRFESGCCSCKDYW 555


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/506 (39%), Positives = 305/506 (60%), Gaps = 3/506 (0%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +N +I GY+ ++    AV L+ +M   G+  +  T   L+   +    +  G   H+ ++
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           R G +  + V N L+ MY   G V  A K+F+ M E+ L+ WN++I+G+A NG     L 
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD 246

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           L+R+M   G+ PD  T+V + S+CA LGA A GR     +   G   N  + NAL++ Y+
Sbjct: 247 LYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYA 306

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG ++ A+ +F  M ++N +SW+ ++ G  ++G G+ A++LF EM     +P    FV 
Sbjct: 307 RCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVS 366

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL ACSH G+ ++G  YF  M+ +YG+ P  EH+ C+VDLLGRAG +++A + I +M + 
Sbjct: 367 VLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVE 426

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           P+  +W  LLGAC IH +  +AE+A   +++ EP + G YVLLSN+++       +  VR
Sbjct: 427 PDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVR 486

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTE 530
             M + ++KK PG S VE   R+  F  GDR+HPQ +EI+ ML  +   +K  G     +
Sbjct: 487 VMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND 546

Query: 531 NVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
               +   EE    +  HSEK+AIAF L+NT PGT + V+KNLRVC DCHL +KL+S++ 
Sbjct: 547 Q---ESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIV 603

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
            R++VVRD +RFHHFK+G CSC+DYW
Sbjct: 604 DRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN  +R  A   +   A+ LY +M  SG  P+  T+PF  K+ + L+    G Q H   
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVF-ELMSERDL-VAWNSVINGFASNGKPNE 227
           I+ G E   FVQ SL+ MY     +  A KVF E    R+L V +N++I G++ N + ++
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           A+ LFR+M  EGV  +  TM+ L   CA    L  G   H    + GL  +++V N LL 
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLT 202

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y +CG +  A+++F  M ++  ++W+ ++ G A NG     L+L+++ME  G VP  VT
Sbjct: 203 MYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVT 262

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMK-DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406
            VGVL +C+H G    G    +R++   +G  P +++   ++++  R G + +A      
Sbjct: 263 LVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDG 320

Query: 407 MLMPPNAVIWRTLLGACTIHGHSAIA 432
           M    N + W  ++    +HG   +A
Sbjct: 321 M-TEKNVISWTAIIAGYGMHGQGELA 345



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 6/276 (2%)

Query: 46  ITLLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV 103
           + L+ VCA   H      +HA S+R G+   +  +G  L+   V     + +A  +F  +
Sbjct: 163 LGLIPVCAGPIHLGFGTSLHACSVRFGLD-GDLSVGNCLLTMYVRCG-SVDFARKLFDGM 220

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
            +  + TWN MI GYA++      ++LY KM  +GI PD  T   +L + + L     G 
Sbjct: 221 PEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGR 280

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           +       +GF    F++N+L++MYA  G++  A  +F+ M+E+++++W ++I G+  +G
Sbjct: 281 EVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHG 340

Query: 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVN 282
           +   A+ LF EM S    PDG   VS+ SAC+  G    G    T + +  GL       
Sbjct: 341 QGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHY 400

Query: 283 NALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
           + ++D   + G +  A+++   M  + +   W  L+
Sbjct: 401 SCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 327/570 (57%), Gaps = 16/570 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQVH ++I++G   +   +G  L      L   +  A   F  + + N+ TW TMI   A
Sbjct: 199 KQVHGYAIKYGAE-SITSMGNSLCSLYAKLG-SLDSALRAFWRIPEKNVITWTTMISACA 256

Query: 120 ESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           E    + L + L+  M + G+ P+  T   ++       D+ +G+Q  + + + G E+ +
Sbjct: 257 EDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNL 316

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA-----------SNGKPNE 227
            V+NS +++Y   G   +A ++FE M +  ++ WN++I+G+A           +  +  +
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           ALT+FR++    ++PD +T  S+ S C+ + AL  G + H    K G   +V VN+AL++
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG I  A + F EM  R  V+W++++ G + +G  +EA++LF+EM + G  P E+T
Sbjct: 437 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 496

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           FV +L ACS+ G+V+E   YF  MK EY I P ++H+GCM+D+  R G V+ A+ +I+  
Sbjct: 497 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 556

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
              PN  IW +L+  C  HG+  +A  A   LL+L+PK    Y+LL N+Y   +RW +V 
Sbjct: 557 GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVA 616

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
            VR+ M +E V      S + + ++V+ F   DR+HPQ  E++ +L  + +K K  GY P
Sbjct: 617 RVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP 676

Query: 528 RTENVFADIEEEEKEDA--LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
                 +D E++EK  A  L +HSE++A+A  L+ T PG  VRV KN+ +C DCH +IKL
Sbjct: 677 YQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKL 736

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            S + +REI+VRD  R H FKDG CSC D+
Sbjct: 737 FSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 168/346 (48%), Gaps = 16/346 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ TW  ++ GY  ++ P L +E++ +M   G  P  +T    L A   
Sbjct: 132 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 191

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             DV +G+Q H  AI+ G ES+  + NSL  +YA  G +  A + F  + E++++ W ++
Sbjct: 192 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 251

Query: 216 INGFASNGKPNE-ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I+  A + +  E  ++LF +M  +GV P+ +T+ S+ S C     L LG++   + +K+G
Sbjct: 252 ISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 311

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG-----------LAVN 323
              N+ V N+ +  Y + G    A R+F +M   + ++W+ ++ G           L   
Sbjct: 312 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 371

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
             G +AL +F++++     P   TF  +L  CS    +++G         + G +  +  
Sbjct: 372 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG-EQIHAQTIKSGFLSDVVV 430

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNA-VIWRTLLGACTIHGH 428
              +V++  + G ++ A +    + MP    V W +++   + HG 
Sbjct: 431 NSALVNMYNKCGCIQDANKAF--LEMPTRTFVTWTSMISGYSQHGQ 474



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 1/231 (0%)

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
           L V+    M   G    +  Y  LL    +   +      H    + G  + +FV  SLV
Sbjct: 61  LDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLV 120

Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
           + Y      +DA ++F+ M ER++V W +++ G+  N +P   L +F EM   G  P  Y
Sbjct: 121 NAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHY 180

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           T+ +  +AC     + LG++ H Y  K G     ++ N+L   Y+K G + +A R F  +
Sbjct: 181 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 240

Query: 306 RKRNAVSWSTLVVGLAVNGFGKE-ALELFKEMEIGGFVPGEVTFVGVLYAC 355
            ++N ++W+T++   A +    E  + LF +M + G +P E T   V+  C
Sbjct: 241 PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA+T    M +EG        V L   C E G+L   R  H ++ K G S ++ V  +L
Sbjct: 64  QEAMT----MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSL 119

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           ++ Y +C     A+R+F  M +RN V+W+ LV G  +N      LE+F EM   G  P  
Sbjct: 120 VNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSH 179

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            T    L AC     VD G         +YG          +  L  + G +  A     
Sbjct: 180 YTLGATLNACLASCDVDLG-KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFW 238

Query: 406 NMLMPPNAVIWRTLLGAC 423
             +   N + W T++ AC
Sbjct: 239 R-IPEKNVITWTTMISAC 255


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 334/561 (59%), Gaps = 5/561 (0%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQDPNIFTWNTMIR 116
           + VHA+S+R    L++   G  +  A++ +      + YA  +F  +   N  TW+ ++ 
Sbjct: 249 RAVHAYSVR-ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
           G+      L A  L+  M   G+   + T     L+A + L+D+ +G+Q H++  ++G  
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLH 367

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235
           + +   NSL+ MYA  G +  A  +F+ M  +D V+++++++G+  NGK +EA  +FR+M
Sbjct: 368 TDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKM 427

Query: 236 ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
            +  V+PD  TMVSL  AC+ L AL  G+  H  V   G++   ++ NAL+D Y+KCG I
Sbjct: 428 QACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRI 487

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             ++++F  M  R+ VSW+T++ G  ++G GKEA  LF +M+     P +VTF+ ++ AC
Sbjct: 488 DLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISAC 547

Query: 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI 415
           SH G+V EG  +F  M  +YGI P++EH+  MVDLL R G + +AY++IQ M +  +  +
Sbjct: 548 SHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRV 607

Query: 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475
           W  LLGAC +H +  + +   S + QL P+ +G++VLLSN+++   R+    EVR    +
Sbjct: 608 WGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKE 667

Query: 476 ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535
           +  KK+PG S +E+   +  F  GDRSH Q+ EI+  L  I   +   GY   T  V  D
Sbjct: 668 QGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQD 727

Query: 536 IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIV 595
           +EEEEKE AL YHSEK+AIAF ++  +    + V KNLRVC DCH  IK ++ V  R I+
Sbjct: 728 VEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAII 787

Query: 596 VRDRSRFHHFKDGHCSCRDYW 616
           VRD +RFHHFK+G CSC D+W
Sbjct: 788 VRDANRFHHFKNGQCSCGDFW 808



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 159/322 (49%), Gaps = 7/322 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S A ++F  +  P I  +N +IR Y+     L      S       +P+ +T+PF+LKA
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L D+R     H  A R G  + +FV  +LV +YA     + A  VF  M  RD+VAW
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY-VW 271
           N+++ G+A +GK ++ +     M  +   P+  T+V+L    A+ GAL+ GR  H Y V 
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 272 KVGL---SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
              L    D V V  ALLD Y+KCG ++ A RVF  M  RN V+WS LV G  + G   E
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 329 ALELFKEMEIGGFVPGEVTFVG-VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           A  LFK+M   G      T V   L AC++   +  G      +  + G+   +     +
Sbjct: 318 AFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLG-KQLHALLAKSGLHTDLTAGNSL 376

Query: 388 VDLLGRAGLVKQAYEYIQNMLM 409
           + +  +AGL+ QA      M++
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVV 398


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 327/566 (57%), Gaps = 15/566 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY- 118
           K +H  +++ G+ L+   +G  L+     +   +  A  IF  + DPN+  +N MI G+ 
Sbjct: 164 KMLHGCAVKLGLDLDVV-VGTALLDTYAKIG-DLEDATKIFKLMPDPNVVMYNAMIAGFL 221

Query: 119 ------AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
                  E AN   A+ L+ +M   G+KP   T+  +LKA S +     G+Q H+   + 
Sbjct: 222 QMETMADEFANE--AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKY 279

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
             +S  F+ N+LV +Y+  G ++D  K F    + D+V+W S+I G   NG+    LTLF
Sbjct: 280 NLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLF 339

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
            E+   G +PD +T+  + SACA L A+  G + H Y  K G+ +   + N+ +  Y+KC
Sbjct: 340 HELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKC 399

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I +A   F+E +  + VSWS ++   A +G  KEA++LF+ M+  G  P  +TF+GVL
Sbjct: 400 GDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVL 459

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412
            ACSH G+V+EG  YF+ MK ++GI P ++H  C+VDLLGRAG + +A  +I +     +
Sbjct: 460 VACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGD 519

Query: 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472
            V+WR+LL AC +H  +   +     +++LEP+ +  YVLL N+Y      +   E+R  
Sbjct: 520 PVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNL 579

Query: 473 MVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENV 532
           M    VKK PG S +E+GN V  F  GDRSHP ++ I+  L E+ +++K   Y+   E +
Sbjct: 580 MKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYID--EKL 637

Query: 533 FADIEEEEKED--ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVY 590
            +D  E + +D   +SYHSEK+A+ F +++     PVRV+KNLR C  CH  +KL S++ 
Sbjct: 638 VSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLE 697

Query: 591 SREIVVRDRSRFHHFKDGHCSCRDYW 616
           +REI++RD  RFH F+DG CSC DYW
Sbjct: 698 NREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 175/380 (46%), Gaps = 51/380 (13%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           + +A  +F    + +  +WN++I GY    +    + L  KM   G+  +++     LKA
Sbjct: 92  IDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKA 151

Query: 153 ISK--LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210
                 + +  G+  H  A++ G +  V V  +L+  YA  G ++DA K+F+LM + ++V
Sbjct: 152 CGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVV 211

Query: 211 AWNSVINGF-----ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265
            +N++I GF      ++   NEA+ LF EM S G++P  +T  S+  AC+ + A   G++
Sbjct: 212 MYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ 271

Query: 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325
            H  ++K  L  +  + NAL++ YS  G I    + F    K + VSW++L+VG   NG 
Sbjct: 272 IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQ 331

Query: 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSH---------------------------- 357
            +  L LF E+   G  P E T   +L AC++                            
Sbjct: 332 FEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNS 391

Query: 358 -------CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA---YEYIQNM 407
                  CG +D     FK  K+     P I  +  M+    + G  K+A   +E ++  
Sbjct: 392 QICMYAKCGDIDSANMTFKETKN-----PDIVSWSVMISSNAQHGCAKEAVDLFELMKGS 446

Query: 408 LMPPNAVIWRTLLGACTIHG 427
            + PN + +  +L AC+ HG
Sbjct: 447 GIAPNHITFLGVLVACS-HG 465



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 7/257 (2%)

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTH 166
           N+ +WN++I GY +       + L+ +  +S ++ D  T+   L    +  D+R+G   H
Sbjct: 5   NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64

Query: 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226
           ++   +G    V + NSL+ MY   G +  A  VFE   E D V+WNS+I G+   G  +
Sbjct: 65  ALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSND 124

Query: 227 EALTLFREMASEGVEPDGYTMVSLFSACAE--LGALALGRRAHTYVWKVGLSDNVNVNNA 284
           E L L  +M   G+  + Y + S   AC      ++  G+  H    K+GL  +V V  A
Sbjct: 125 EMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTA 184

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL-----AVNGFGKEALELFKEMEIG 339
           LLD Y+K G +  A ++F+ M   N V ++ ++ G        + F  EA+ LF EM+  
Sbjct: 185 LLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSR 244

Query: 340 GFVPGEVTFVGVLYACS 356
           G  P E TF  +L ACS
Sbjct: 245 GMKPSEFTFSSILKACS 261



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 16/227 (7%)

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
           M +R++V+WNS+I+G+   G  +E + LF+E     +  D +T  +  S C     L LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           R  H  +   GL   V + N+L+D Y KCG I  A+ VF    + ++VSW++L+ G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-------HCGMVDEGFSYFKRMKDEYG 376
           G   E L L  +M   G           L AC         CG +  G +       + G
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAV------KLG 174

Query: 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGA 422
           +   +     ++D   + G ++ A +  +  LMP PN V++  ++  
Sbjct: 175 LDLDVVVGTALLDTYAKIGDLEDATKIFK--LMPDPNVVMYNAMIAG 219


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 327/570 (57%), Gaps = 16/570 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQVH ++I++G   +   +G  L      L   +  A   F  + + N+ TW TMI   A
Sbjct: 159 KQVHGYAIKYGAE-SITSMGNSLCSLYAKLG-SLDSALRAFWRIPEKNVITWTTMISACA 216

Query: 120 ESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           E    + L + L+  M + G+ P+  T   ++       D+ +G+Q  + + + G E+ +
Sbjct: 217 EDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNL 276

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA-----------SNGKPNE 227
            V+NS +++Y   G   +A ++FE M +  ++ WN++I+G+A           +  +  +
Sbjct: 277 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 336

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           ALT+FR++    ++PD +T  S+ S C+ + AL  G + H    K G   +V VN+AL++
Sbjct: 337 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 396

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG I  A + F EM  R  V+W++++ G + +G  +EA++LF+EM + G  P E+T
Sbjct: 397 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 456

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           FV +L ACS+ G+V+E   YF  MK EY I P ++H+GCM+D+  R G V+ A+ +I+  
Sbjct: 457 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 516

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
              PN  IW +L+  C  HG+  +A  A   LL+L+PK    Y+LL N+Y   +RW +V 
Sbjct: 517 GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVA 576

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
            VR+ M +E V      S + + ++V+ F   DR+HPQ  E++ +L  + +K K  GY P
Sbjct: 577 RVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP 636

Query: 528 RTENVFADIEEEEKEDA--LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
                 +D E++EK  A  L +HSE++A+A  L+ T PG  VRV KN+ +C DCH +IKL
Sbjct: 637 YQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKL 696

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            S + +REI+VRD  R H FKDG CSC D+
Sbjct: 697 FSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 168/346 (48%), Gaps = 16/346 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ TW  ++ GY  ++ P L +E++ +M   G  P  +T    L A   
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             DV +G+Q H  AI+ G ES+  + NSL  +YA  G +  A + F  + E++++ W ++
Sbjct: 152 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 211

Query: 216 INGFASNGKPNE-ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I+  A + +  E  ++LF +M  +GV P+ +T+ S+ S C     L LG++   + +K+G
Sbjct: 212 ISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 271

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG-----------LAVN 323
              N+ V N+ +  Y + G    A R+F +M   + ++W+ ++ G           L   
Sbjct: 272 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 331

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
             G +AL +F++++     P   TF  +L  CS    +++G         + G +  +  
Sbjct: 332 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG-EQIHAQTIKSGFLSDVVV 390

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNA-VIWRTLLGACTIHGH 428
              +V++  + G ++ A +    + MP    V W +++   + HG 
Sbjct: 391 NSALVNMYNKCGCIQDANKAF--LEMPTRTFVTWTSMISGYSQHGQ 434



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 187 MYAAFGH--VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244
           MY    H   +DA ++F+ M ER++V W +++ G+  N +P   L +F EM   G  P  
Sbjct: 80  MYVPLLHRAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSH 139

Query: 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304
           YT+ +  +AC     + LG++ H Y  K G     ++ N+L   Y+K G + +A R F  
Sbjct: 140 YTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWR 199

Query: 305 MRKRNAVSWSTLVVGLAVNGFGKE-ALELFKEMEIGGFVPGEVTFVGVLYAC 355
           + ++N ++W+T++   A +    E  + LF +M + G +P E T   V+  C
Sbjct: 200 IPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 251


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 327/570 (57%), Gaps = 16/570 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQVH ++I++G   +   +G  L      L   +  A   F  + + N+ TW TMI   A
Sbjct: 199 KQVHGYAIKYGAE-SITSMGNSLCSLYAKLG-SLDSALRAFWRIPEKNVITWTTMISACA 256

Query: 120 ESANPL-LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           E    + L + L+  M + G+ P+  T   ++       D+ +G+Q  + + + G E+ +
Sbjct: 257 EDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNL 316

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA-----------SNGKPNE 227
            V+NS +++Y   G   +A ++FE M +  ++ WN++I+G+A           +  +  +
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287
           ALT+FR++    ++PD +T  S+ S C+ + AL  G + H    K G   +V VN+AL++
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347
            Y+KCG I  A + F EM  R  V+W++++ G + +G  +EA++LF+EM + G  P E+T
Sbjct: 437 MYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEIT 496

Query: 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407
           FV +L ACS+ G+V+E   YF  MK EY I P ++H+GCM+D+  R G V+ A+ +I+  
Sbjct: 497 FVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRT 556

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
              PN  IW +L+  C  HG+  +A  A   LL+L+PK    Y+LL N+Y   +RW +V 
Sbjct: 557 GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVA 616

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
            VR+ M +E V      S + + ++V+ F   DR+HPQ  E++ +L  + +K K  GY P
Sbjct: 617 RVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEP 676

Query: 528 RTENVFADIEEEEKEDA--LSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
                 +D E++EK  A  L +HSE++A+A  L+ T PG  VRV KN+ +C DCH +IKL
Sbjct: 677 YQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKL 736

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
            S + +REI+VRD  R H FKDG CSC D+
Sbjct: 737 FSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 168/346 (48%), Gaps = 16/346 (4%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  + + N+ TW  ++ GY  ++ P L +E++ +M   G  P  +T    L A   
Sbjct: 132 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 191

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             DV +G+Q H  AI+ G ES+  + NSL  +YA  G +  A + F  + E++++ W ++
Sbjct: 192 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 251

Query: 216 INGFASNGKPNE-ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           I+  A + +  E  L+LF +M  +GV P+ +T+ S+ S C     L LG++   + +K+G
Sbjct: 252 ISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 311

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG-----------LAVN 323
              N+ V N+ +  Y + G    A R+F +M   + ++W+ ++ G           L   
Sbjct: 312 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 371

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
             G +AL +F++++     P   TF  +L  CS    +++G         + G +  +  
Sbjct: 372 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG-EQIHAQTIKSGFLSDVVV 430

Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNA-VIWRTLLGACTIHGH 428
              +V++  + G ++ A +    + MP    V W +++   + HG 
Sbjct: 431 NSALVNMYNKCGCIQDANKAF--LEMPTRTFVTWTSMISGYSQHGQ 474



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 1/240 (0%)

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G  E+    L V+    M   G    +  Y  LL    ++  +      H    + G  +
Sbjct: 52  GGMEAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGA 111

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            +FV  SLV+ Y   G  +DA ++F+ M ER++V W +++ G+  N +P   L +F EM 
Sbjct: 112 DMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEML 171

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G  P  YT+ +  +AC     + LG++ H Y  K G     ++ N+L   Y+K G + 
Sbjct: 172 EMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLD 231

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE-ALELFKEMEIGGFVPGEVTFVGVLYAC 355
           +A R F  + ++N ++W+T++   A +    E  L LF +M + G +P E T   V+  C
Sbjct: 232 SALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            EA+T    M +EG        V L   C E+G+L   R  H ++ K G   ++ V  +L
Sbjct: 64  QEAMT----MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSL 119

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           ++ Y +CG    A+R+F  M +RN V+W+ LV G  +N      LE+F EM   G  P  
Sbjct: 120 VNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSH 179

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
            T    L AC     VD G         +YG          +  L  + G +  A     
Sbjct: 180 YTLGATLNACLASCDVDLG-KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFW 238

Query: 406 NMLMPPNAVIWRTLLGAC 423
             +   N + W T++ AC
Sbjct: 239 R-IPEKNVITWTTMISAC 255


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/495 (40%), Positives = 303/495 (61%), Gaps = 1/495 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ TW  +I G++++  P  A+ L+ +M   G++P+  T   LLKA   
Sbjct: 142 ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGS 201

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              +  G Q H+  ++ G++S V+V ++LV MYA  GH+  A   F+ M  +  V+WN++
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
           I+G A  G+   AL L  +M  +  +P  +T  S+FSACA +GAL  G+  H ++ K GL
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGL 321

Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
                + N LLD Y+K G I  A+RVF  + K + VSW+T++ G A +G GKE L+ F++
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M   G  P E++F+ VL ACSH G++DEG  YF+ MK +Y + P + H+   VDLLGR G
Sbjct: 382 MLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVG 440

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
           L+ +A  +I+ M + P A +W  LLGAC +H +  +   A     +L+P  SG  +LLSN
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSN 500

Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
           +YA   RW +V +VR+ M +  VKK P  S VE+ N V  F   D +HPQ +EI     E
Sbjct: 501 IYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEE 560

Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
           I+ K+K  GYVP T +V   ++++E+E+ L YHSEK+A+AF L+NT  G+P+R+ KN+RV
Sbjct: 561 ISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRV 620

Query: 576 CADCHLAIKLISKVY 590
           C DCH AIK +SK+Y
Sbjct: 621 CGDCHAAIKFVSKIY 635



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 194/365 (53%), Gaps = 19/365 (5%)

Query: 71  VPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN-----IFTWNTMIR-GYAESANP 124
           +P+ +P  G   I+A    + P S +++  S V+D +     +F    ++R   ++    
Sbjct: 17  IPVRSPPSGFATIHAP---AXPFSDSND--SEVEDGDAXSFCVFQDKDLLRKSQSDGGTG 71

Query: 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESLVFVQNS 183
           L A++L  +     + PD + Y  LLK  ++L  V  G   H+  + + F ++ + +QN 
Sbjct: 72  LYALDLIQR---GSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNI 128

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
           +V+MYA  G + DA ++F+ M  +D+V W ++I GF+ N +P +AL LF +M   G++P+
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPN 188

Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
            +T+ SL  A      L  G + H +  K G   +V V +AL+D Y++CG + AAQ  F 
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
            M  ++ VSW+ L+ G A  G G+ AL L  +M+   F P   T+  V  AC+  G +++
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQ 308

Query: 364 G-FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           G + +   +K    ++  I +   ++D+  +AG +  A + + + L+ P+ V W T+L  
Sbjct: 309 GKWVHAHMIKSGLKLIAFIGN--TLLDMYAKAGSIDDA-KRVFDRLVKPDVVSWNTMLTG 365

Query: 423 CTIHG 427
           C  HG
Sbjct: 366 CAQHG 370



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 53  ASSKHKLK---QVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIF 109
           + S+H L    Q+HAF +++G   ++  +G  L+         M  A   F  +   +  
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQ-SSVYVGSALVDMYARCGH-MDAAQLAFDGMPTKSEV 256

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
           +WN +I G+A       A+ L  KM     +P   TY  +  A + +  +  G+  H+  
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHM 316

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229
           I++G + + F+ N+L+ MYA  G + DA +VF+ + + D+V+WN+++ G A +G   E L
Sbjct: 317 IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETL 376

Query: 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
             F +M   G+EP+  + + + +AC+  G L  G      + K  +  +V      +D  
Sbjct: 377 DRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLL 436

Query: 290 SKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            + G++  A+R  REM  +  A  W  L+           A  + K ME+G
Sbjct: 437 GRVGLLDRAERFIREMPIEPTAAVWGALL----------GACRMHKNMELG 477


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/517 (41%), Positives = 312/517 (60%), Gaps = 40/517 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++LL+ C++ KH L Q H F +  G+  +N  L ++ I A  SL F   Y+H+IF+H   
Sbjct: 45  LSLLKQCSNLKH-LHQTHCFMLSRGLDQDNILLSRF-IEACSSLGFS-HYSHSIFTHKTR 101

Query: 106 PNIFTWNTMIRGYAESANPLLAVE---LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           P+I+ +NT+I+  +   NP LA E   LY+++  S ++ DT++ PF+LKA+ +L  + +G
Sbjct: 102 PDIYLYNTIIKALS---NPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVG 158

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMY-------------------------------AAF 191
            Q H  AI  G  S + V  +L+ MY                               A  
Sbjct: 159 RQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKV 218

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G V +A  +FE M ER++++W +VI G+A   +PNEA+T+FR M  E VEPD   M++  
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SACA LGAL LG   H Y+ K GLS  V +NNAL+D Y+KCG I  A  VF+ M  ++ +
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W++++ GLA++G G+EALE+F  ME     P E+TFV +L AC H G+V+ G  YFK M
Sbjct: 339 TWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCM 398

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
             +YGI PKI+H+GCM+DLLGRAG +++A E ++ M    NA IW +LL A  IHG + +
Sbjct: 399 GTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAEL 458

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            + A   L+++EP +SG+Y LLSN+YA + +W     VR+ M    VKK PG S +E+ N
Sbjct: 459 GKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           RV EF  GD+ HPQ+E I  +L +I  + K+  YV +
Sbjct: 519 RVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYVQK 555



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 138/310 (44%), Gaps = 33/310 (10%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL  + + ++++   QTH   +  G +    + +  +   ++ G    +  +F   +  D
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +  +N++I   ++     EA+ L+  + +  +  D Y++  +  A   L A+ +GR+ H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR---------------------------- 300
                GL  +++V  AL+  YS CG +  A++                            
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 301 ---VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
              +F  M +RN +SW+ ++ G A      EA+ +F+ M++    P E+  +  L AC+H
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G ++ G  +     D++G+   +     ++D+  + G +++A E  +NM    + + W 
Sbjct: 284 LGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM-EHKSVITWT 341

Query: 418 TLLGACTIHG 427
           +++    +HG
Sbjct: 342 SMIDGLALHG 351


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 252/370 (68%)

Query: 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306
           M  +  ACA + AL  G++ H  + K+G   +V+V+N L+D Y KCG I  AQ VF ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 307 KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           + +  SW+ ++ GLA +G GKEA+ LF++M   G  P ++TFV VL  CSH G+VDEG +
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIH 426
           YF  M  ++GI PK EH+ CMVDL GRAG + +A  +I  M + PNA +W +LLGAC +H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSL 486
           G+  +AE A   L++L P++ G YVLLSN+YA   RW +  +VR+ M    VKK PG S 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 487 VELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALS 546
           +E+ N+V  F +GD SHPQ EEI+  L  +T ++K  GY+P T  V  D+EEE+KE  L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 547 YHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
           +HSEK+AIAF +++T PGT +RVVKNLRVC DCH A K IS++ SREIV+RD  RFHHFK
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 607 DGHCSCRDYW 616
           DG CSC DYW
Sbjct: 361 DGQCSCGDYW 370



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           +L+A + +A +  G+Q H+  I+ GFE  V V N LV MY   G ++DA +VF  + E D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           + +WN++I+G A +G   EA+ LF +M   GV+P+  T V + S C+  G +  GR    
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 269 YVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG-- 324
            + +  G+S      + ++D + + G +  A     +M  + NA  W +L+    V+G  
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 325 -FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
              + A+E    +E+    PG    +  +YA +  G  D+     K MKD
Sbjct: 184 ELAERAVEQL--IELTPENPGTYVLLSNIYAAA--GRWDDAGKVRKMMKD 229



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 40/265 (15%)

Query: 48  LLQVCAS--SKHKLKQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ 104
           +L+ CAS  +  + KQVHA  I+ G  L+ +   G   +Y        +  A  +FS + 
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGR---IEDAQEVFSKLL 60

Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
           +P++ +WN MI G A+      AV L+ +M  +G+KP+  T+  +L   S    V  G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEG-- 118

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
                 RN F+S+   ++  +   A                      ++ +++ F   G 
Sbjct: 119 ------RNYFDSM--TRDHGISPKAEH--------------------YSCMVDLFGRAGC 150

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            +EAL    +M    VEP+     SL  AC   G + L  RA   + ++   +N      
Sbjct: 151 LDEALNFINQMP---VEPNASVWGSLLGACRVHGNIELAERAVEQLIEL-TPENPGTYVL 206

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRN 309
           L + Y+  G    A +V + M+ R+
Sbjct: 207 LSNIYAAAGRWDDAGKVRKMMKDRS 231


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 323/510 (63%), Gaps = 2/510 (0%)

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
           F  +++ R  A    P  A+  Y ++  + +   +  +    KA + L+ +R G   H+ 
Sbjct: 75  FLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAH 134

Query: 169 AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228
           ++  GF S  FVQ +LV +Y+  G +  A K+F+ + +R +VAWN++I+G+  NG    A
Sbjct: 135 SVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERA 194

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           + ++REM    V PD  T V+  SACA+ GAL LGR     +    +  +V + +AL++ 
Sbjct: 195 IEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNM 254

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y++CG++  A+  F  +++RN V+W++++ G  ++G G+EA++LF  M   G  P +VTF
Sbjct: 255 YARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTF 314

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI-QNM 407
           V VL AC+H G+V+EG + F  MK  YG++P+ EH+  MVD+ GRAGL+  A ++I  ++
Sbjct: 315 VAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSI 374

Query: 408 LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467
              P   +W  +LGAC +H +  +       L+ LEP++    VLLSN+YA   +  +V+
Sbjct: 375 PEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVE 434

Query: 468 EVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP 527
           +VR  M+K R+KK  G+SL+ELG     F MG++SH QT EI+  L E+  ++   GYVP
Sbjct: 435 KVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVP 494

Query: 528 RTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT-PVRVVKNLRVCADCHLAIKLI 586
            T++V  ++EEEE+E AL YHSEK+A+A+ L+ ++  T P+RV+KNLR+C DCHLAIK +
Sbjct: 495 ETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFM 554

Query: 587 SKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           S V SREI+VRD+ RFHHFKDG CSC +YW
Sbjct: 555 SSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 315/522 (60%), Gaps = 8/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ +   ++ +WNTM+ G ++S     AVE    + ++    ++ ++  ++   + 
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGLSKSG----AVEEAKAVFLAMPVRNSVSWNAMVSGFAC 203

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+   E+    A   G   L     ++V  Y   G+V  A + FE M  R+LV+WN+V
Sbjct: 204 SRDMSAAEEWFRNAPEKGDAVL---WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAV 260

Query: 216 INGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           + G+  N   ++AL LFR M  E  V+P+  T+ S+   C+ L AL  G++ H +  K+ 
Sbjct: 261 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 320

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           LS N+ V  +L+  Y KCG + +A ++F EM  R+ V+W+ ++ G A +G GKEA+ LF+
Sbjct: 321 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 380

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  G  P  +TFV VL AC H G+ D G   F+ M++ YGI P+++H+ CMVDLL RA
Sbjct: 381 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRA 440

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G +++A + I++M   P+   + TLL AC ++ +   AE+A   L++ +P+ +G YV L+
Sbjct: 441 GKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLA 500

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   +W +V  VRR M    V KTPG+S +E+   + EF   DR HPQ   IH  L 
Sbjct: 501 NIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLG 560

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +++K  GYVP  + V  D++E  K   L  HSEK+AI+F L++TAPG  +R+ KNLR
Sbjct: 561 QLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLR 620

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH A K+ISK+  REI++RD +RFHHF+ GHCSC DYW
Sbjct: 621 VCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 140 KPDTHTYPFLL----KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
           +  T TY  LL    +A+ +LAD R     H        +++ +  N+L+  + A G   
Sbjct: 94  RKTTATYNCLLAGYARALGRLADAR-----HLFDRIPTPDAVSY--NTLLSCHFASGDAD 146

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
            A ++F  M  RD+V+WN++++G + +G   EA  +F  M           MVS F+   
Sbjct: 147 GARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN-SVSWNAMVSGFACSR 205

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           ++ A      A  +        +  +  A++  Y   G ++ A   F  M  RN VSW+ 
Sbjct: 206 DMSA------AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNA 259

Query: 316 LVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSH 357
           +V G   N    +AL LF+ M       P   T   VL  CS+
Sbjct: 260 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 302



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 60  KQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           KQ+H + ++  +PL+ N  +G  L+ ++      +S A  +F  +   ++  WN MI GY
Sbjct: 310 KQIHQWCMK--LPLSRNLTVGTSLV-SMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY 366

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           A+  +   A+ L+ +M   G++P+  T+  +L A
Sbjct: 367 AQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 400


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 309/527 (58%), Gaps = 14/527 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F      ++FTW  ++ GYA++     A  ++  M      P+ +   +    
Sbjct: 240 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMV 293

Query: 153 ISKLADVRMGEQT---HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
            + +    M E     + +  RN     V   N+++  YA  G +++A  VF+ M ++D 
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+W +++  ++  G   E L LF EM   G   +      + S CA++ AL  G + H  
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + + G      V NALL  Y KCG +  A+  F EM +R+ VSW+T++ G A +GFGKEA
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE+F  M      P ++T VGVL ACSH G+V++G SYF  M  ++G+  K EH+ CM+D
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG + +A++ +++M   P++ +W  LLGA  IH +  +   A   + +LEP+++G 
Sbjct: 529 LLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGM 588

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA   +W + +++R  M +  VKK PG S +E+ N+V  F  GD  HP+ E+I
Sbjct: 589 YVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKI 648

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +A L ++  ++K  GYV  T+ V  D+EEEEKE  L YHSEK+A+A+ ++N  PG P+RV
Sbjct: 649 YAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRV 708

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLRVC DCH A K IS +  R I++RD +RFHHF+ G CSC DYW
Sbjct: 709 IKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 156/339 (46%), Gaps = 36/339 (10%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-- 153
           A  +F+ +   +  T+N M+ GY+ +    LA  L+  +     +PD ++Y  LL A+  
Sbjct: 57  AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDNYSYNTLLHALAV 112

Query: 154 -SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S LAD R       + +R   +S+ +  N ++  +A  G V  A   F+L  E+D V+W
Sbjct: 113 SSSLADAR--GLFDEMPVR---DSVTY--NVMISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N ++  +  NG+  EA  LF    +   E D  +  +L S   + G ++  R     ++ 
Sbjct: 166 NGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALMSGYVQWGKMSEARE----LFD 217

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
                +V   N ++  Y++ G ++ A+R+F     R+  +W+ +V G A NG  +EA  +
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDL 390
           F  M         V++  ++ A     M+DE        K+ + +MP   +  +  M+  
Sbjct: 278 FDAMP----ERNAVSWNAMVAAYIQRRMMDEA-------KELFNMMPCRNVASWNTMLTG 326

Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
             +AG++++A      M    +AV W  +L A +  G S
Sbjct: 327 YAQAGMLEEAKAVFDTMPQ-KDAVSWAAMLAAYSQGGCS 364



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
            E  V   N  +  +   G V DA ++F  M  R    +N+++ G+++NG+   A +LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN-----NALLDF 288
            +      PD Y+  +L  A A   +LA  R         GL D + V      N ++  
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADAR---------GLFDEMPVRDSVTYNVMISS 140

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           ++  G++  A+  F    +++AVSW+ ++     NG  +EA  LF
Sbjct: 141 HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 185


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 286/443 (64%), Gaps = 9/443 (2%)

Query: 183 SLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA---------SNGKPNEALTLFR 233
           +L+ ++A  G +    +VF+ ++  DL AWN++++ +A         +    +  L LF 
Sbjct: 518 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFV 577

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            M S  +EP+  T+V++  AC ELGA++ G  AHTY  K  L+ N  V  AL++ Y+ CG
Sbjct: 578 RMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 637

Query: 294 IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
            +  A++VF  +  R+   ++ ++ GLAV+G G+ AL L   M   G     VT + V+ 
Sbjct: 638 RLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 697

Query: 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413
           AC+H G+VDEG  YF RM+ E+GI P+IEH+GCM+D+L RAG +  A + I  ML+ PNA
Sbjct: 698 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNA 757

Query: 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473
            I+R+L+ AC IHG   + E   + L++LEP  SG++VL+SN YA   RW + ++ R+ M
Sbjct: 758 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 817

Query: 474 VKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF 533
               + K PG SLV++   + EF +GD++HP ++EI+ M+ EI  +L   G    T +  
Sbjct: 818 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 877

Query: 534 ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSRE 593
            D+EEE+K D LSYHSE++AIAF L+ + PG P+R++KNLRVCADCH + KL+S+VY RE
Sbjct: 878 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 937

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
           IV+RDR+RFHHF+DG CSC D+W
Sbjct: 938 IVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 19/251 (7%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAE-----------SANPLLAVELYSKMHVSGIKPDTHTYP 147
           +F  +  P++  WN ++  YA            +A+ +L  EL+ +M    I+P+  T  
Sbjct: 535 VFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAIL--ELFVRMLSLAIEPNEITLV 592

Query: 148 FLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            ++ A  +L  V  G   H+ A++        V  +LV MYA  G +  A +VF  +S+R
Sbjct: 593 AVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDR 652

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D   +N++++G A +G    AL+L   M   GV  DG T++S+  ACA  G +  G    
Sbjct: 653 DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYF 712

Query: 268 TYV-WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGF 325
             +  + G+   +     ++D  S+ G +  A+++  EM    NA  + +L+    ++G 
Sbjct: 713 DRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRSLIRACGIHG- 771

Query: 326 GKEALELFKEM 336
               LEL ++M
Sbjct: 772 ---KLELGEKM 779



 Score = 38.9 bits (89), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 18/208 (8%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +  A  +F+ V D +   +N M+ G A   +   A+ L  +MH +G+  D  T   ++ A
Sbjct: 639 LDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCA 698

Query: 153 ISKLADVRMG-EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACK-VFELMSERDLV 210
            +    V  G +    + I  G E  +     ++ M +  G + +A K + E++   +  
Sbjct: 699 CAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNAA 758

Query: 211 AWNSVINGFASNGKPNEALTLFREMASE--GVEPD---GYTMVSLFSACAELGALALGRR 265
            + S+I     +GK    L L  +M +E   +EPD    + ++S F   A        ++
Sbjct: 759 IYRSLIRACGIHGK----LELGEKMIAELMRLEPDDSGNHVLISNFY--ARTNRWEDAKK 812

Query: 266 AHTYVWKVGLSDN-----VNVNNALLDF 288
           A   +  +G+  N     V++N  L +F
Sbjct: 813 ARKEMKSMGIDKNPGSSLVDINGVLHEF 840


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 338/620 (54%), Gaps = 52/620 (8%)

Query: 29  STPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVS 88
           S PA    P+TS                  L+Q H+  IR GV  +     + L +    
Sbjct: 6   SAPAPTPVPLTSFA---------------LLRQHHSQLIRLGVASHAAHARRLLSFLARD 50

Query: 89  LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYP 147
                 YA  + +H  DP+   +N +      SA P   A  L + M    ++PD  T+P
Sbjct: 51  PDSHFPYASRLLAHHPDPHPALFNPLF-----SALPTRHAARLLALMLSLPLRPDHFTFP 105

Query: 148 FLLKAISKLADV--------RMGEQTH--------------------SVAIRNGFESLVF 179
            +L +   L  V        ++G   H                    S   R G  +L  
Sbjct: 106 QILPSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDV 165

Query: 180 VQ-NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           V   ++V      G   DA  +F+ M ER+LV+WN++++G+    +  +AL +F EM + 
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRAR 225

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           GV+ + +   +   AC   GALA GR  H +V + G+  +  +  A++D Y KCG +  A
Sbjct: 226 GVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285

Query: 299 QRVFR--EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            RVF    +  +   +W+ ++ G AV+G G++AL+LF  ME  G  P +VT V VL AC+
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACA 345

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
           H GM+ EG  YF  +   YGI PK+EH+GCMVDL GRAG +++A + IQ+M M P+  + 
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
             L GA  IHG   + E     +++L+P++SG YVLL+NL A   RW +V  VRR M + 
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            V K  G S++E+   V EF  G   HP+ EE++AM  ++ ++++ EGYVP T +V   I
Sbjct: 466 NVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLHAI 525

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
            EEEKE  L YHSEK+AIAF L++T PG  +R+ KNLRVC DCH A K +S+V+ R+IVV
Sbjct: 526 AEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVV 585

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RDR+RFHHFKDG CSC+DYW
Sbjct: 586 RDRNRFHHFKDGQCSCKDYW 605


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/517 (41%), Positives = 312/517 (60%), Gaps = 40/517 (7%)

Query: 46  ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           ++LL+ C++ KH L Q H F +  G+  +N  L ++ I A  SL F   Y+H+IF+H   
Sbjct: 45  LSLLKQCSNLKH-LHQTHCFMLSRGLDQDNILLSRF-IEACSSLGFS-HYSHSIFTHKTR 101

Query: 106 PNIFTWNTMIRGYAESANPLLAVE---LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
           P+I+ +NT+I+  +   NP LA E   LY+++  S ++ DT++ PF+LKA+ +L  + +G
Sbjct: 102 PDIYLYNTIIKALS---NPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVG 158

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMY-------------------------------AAF 191
            Q H  AI  G  S + V  +L+ MY                               A  
Sbjct: 159 RQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKV 218

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G V +A  +FE M ER++++W +VI G+A   +PNEA+T+FR M  E VEPD   M++  
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
           SACA LGAL LG   H Y+ K GLS  V +NNAL+D Y+KCG I  A  VF+ M  ++ +
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           +W++++ GLA++G G+EALE+F  ME     P E+TFV +L AC H G+V+ G  YFK M
Sbjct: 339 TWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCM 398

Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
             +YGI PKI+H+GCM+DLLGRAG +++A E ++ M    NA IW +LL A  IHG + +
Sbjct: 399 GTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAEL 458

Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
            + A   L+++EP +SG+Y LLSN+YA + +W     VR+ M    VKK PG S +E+ N
Sbjct: 459 GKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518

Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           RV EF  GD+ HPQ+E I  +L +J  + K+  YV +
Sbjct: 519 RVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYVQK 555



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 138/310 (44%), Gaps = 33/310 (10%)

Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
           LL  + + ++++   QTH   +  G +    + +  +   ++ G    +  +F   +  D
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           +  +N++I   ++     EA+ L+  + +  +  D Y++  +  A   L A+ +GR+ H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR---------------------------- 300
                GL  +++V  AL+  YS CG +  A++                            
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 301 ---VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
              +F  M +RN +SW+ ++ G A      EA+ +F+ M++    P E+  +  L AC+H
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G ++ G  +     D++G+   +     ++D+  + G +++A E  +NM    + + W 
Sbjct: 284 LGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM-EHKSVITWT 341

Query: 418 TLLGACTIHG 427
           +++    +HG
Sbjct: 342 SMIDGLALHG 351


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 334/595 (56%), Gaps = 43/595 (7%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           K +H F+++HG+  +      ++  A+V+L      +  A  +F  +   N+ TWN++  
Sbjct: 363 KTIHGFAVKHGMVED-----VFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSS 417

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y     P   + ++ +M ++G+KPD  T   +L A S L D++ G+  H  A+R+G   
Sbjct: 418 CYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE 477

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS---------------------- 214
            VFV N+L+ +YA    V++A  VF+L+  R++ +WN                       
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMN 537

Query: 215 -------------VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
                        VI G   N +  EA+ +FR+M + G +PD  T+ S+  AC+    L 
Sbjct: 538 RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLR 597

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           +G+  H YV++     ++   NAL+D Y+KCG +  ++ VF  M  ++  SW+T++    
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
           ++G GKEAL LF++M +    P   TF  VL ACSH  +V+EG   F  M  ++ + P+ 
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEA 717

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
           EH+ C+VD+  RAG +++AY +IQ M M P A+ W+  L  C ++ +  +A+I+   L +
Sbjct: 718 EHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE 777

Query: 442 LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDR 501
           ++P  S +YV L N+    + W    ++R+ M +  + KTPG S   +GNRV  F  GD+
Sbjct: 778 IDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDK 837

Query: 502 SHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT 561
           S+ ++++I+  L E+  K+K  GY P T+ V  DI++EEK ++L  HSEK+A+AF ++N 
Sbjct: 838 SNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNL 897

Query: 562 APGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
              + +RV KNLR+C DCH AIK +S V    IVVRD  RFHHFK+G+CSC+D+W
Sbjct: 898 NGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 212/426 (49%), Gaps = 21/426 (4%)

Query: 2   TSWLMHSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKH--KL 59
           TS     K PS+     LP     +Y S+ A    P   V    + + + CA+S+   K+
Sbjct: 3   TSIKNKKKSPSFGIPHGLPNEAIKIYTSSRARGIKPDKPVF---MAVAKACAASRDALKV 59

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ H  + R GV +++  +G   I+A       +  A  +F  +   ++ TWN++   Y 
Sbjct: 60  KQFHDDATRCGV-MSDVSIGNAFIHAYGKCKC-VEGARRVFDDLVARDVVTWNSLSACYV 117

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
               P   + ++ KM ++ +K +  T   +L   S L D++ G++ H   +R+G    VF
Sbjct: 118 NCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVF 177

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V ++ V+ YA    V++A  VF+LM  RD+V WNS+ + + + G P + L +FREM  +G
Sbjct: 178 VSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDG 237

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V+PD  T+  + SAC++L  L  G+  H +  K G+ +NV V+NAL++ Y  C  +  AQ
Sbjct: 238 VKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQ 297

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH-- 357
            VF  M  RN ++W++L       GF ++ L +F+EM + G  P  +    +L ACS   
Sbjct: 298 AVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLK 357

Query: 358 ---CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-PNA 413
               G    GF+       ++G++  +     +V+L      V++A       LMP  N 
Sbjct: 358 DLKSGKTIHGFAV------KHGMVEDVFVCTALVNLYANCLCVREAQTVFD--LMPHRNV 409

Query: 414 VIWRTL 419
           V W +L
Sbjct: 410 VTWNSL 415



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 177/325 (54%), Gaps = 9/325 (2%)

Query: 34  QENPIT--SVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
           + NP+T  S++  C  L  + +      K++H F +RHG+  +      ++ +    L  
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSG-----KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLC- 191

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            +  A  +F  +   ++ TWN++   Y     P   + ++ +M + G+KPD  T   +L 
Sbjct: 192 -VREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILS 250

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           A S L D++ G+  H  A+++G    VFV N+LV++Y +   V++A  VF+LM  R+++ 
Sbjct: 251 ACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVIT 310

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           WNS+ + + + G P + L +FREM   GV+PD   M S+  AC++L  L  G+  H +  
Sbjct: 311 WNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAV 370

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K G+ ++V V  AL++ Y+ C  +  AQ VF  M  RN V+W++L       GF ++ L 
Sbjct: 371 KHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLN 430

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACS 356
           +F+EM + G  P  VT + +L+ACS
Sbjct: 431 VFREMVLNGVKPDLVTMLSILHACS 455



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 34  QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY-LIYAIVSLSFP 92
            E  I S++R C   L  C       K++H +  RH     + DL +   +  + +    
Sbjct: 579 DETTIYSILRACS--LSECLRMG---KEIHCYVFRH---WKDWDLARTNALVDMYAKCGG 630

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           +S + N+F  +   ++F+WNTMI       N   A+ L+ KM +S +KPD+ T+  +L A
Sbjct: 631 LSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSA 690

Query: 153 ISKLADVRMGEQTHSVAIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLV 210
            S    V  G Q  +   R+   E        +V +Y+  G +++A    + M  E   +
Sbjct: 691 CSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAI 750

Query: 211 AWNSVING 218
           AW + + G
Sbjct: 751 AWKAFLAG 758


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/537 (38%), Positives = 321/537 (59%), Gaps = 8/537 (1%)

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV--SGIKPD 142
           A+ SL  P  +A ++    Q PN  ++ +    +  +   L A+   S  H   + + P 
Sbjct: 17  ALSSLLKPTFFA-SLSLQYQSPNP-SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPT 74

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
              Y  LL++      ++ G+Q H+     GF     +   LV++Y     +  A  +F+
Sbjct: 75  YSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFD 134

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
            + + ++  WN +I G+A NG    A+ L+ +M   G+ PD +T   +  ACA L A+  
Sbjct: 135 RIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEH 194

Query: 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV---SWSTLVVG 319
           GR  H +V + G   +V V  AL+D Y+KCG + +A+ VF ++  R+AV   SW+ ++ G
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITG 254

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            A++G   EAL+LF+EM      P  +TFVGVL ACSH G+++EG+ +F+ M  +Y I P
Sbjct: 255 YAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDP 313

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            ++H+ CMVDLLG +G + +AY  I  M + P++ +W  LL +C IH +  + EIA   L
Sbjct: 314 TVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERL 373

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
           ++LEP  +G+YV+LSN+YA   +W  V ++R+ M   R+KK+   S +E+ N+V  F  G
Sbjct: 374 IELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSG 433

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           D SHP ++EI++ L  +   +K  GY P T +VF D+E++EK + +  HSE++AIAF L+
Sbjct: 434 DTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLI 493

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +T PGT + + KNLR+C DCH+AIK ISK+  REI VRD +R+HHFKDG CSC DYW
Sbjct: 494 STPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 309/527 (58%), Gaps = 14/527 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F      ++FTW  ++ GYA++     A  ++  M      P+ +   +    
Sbjct: 240 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMV 293

Query: 153 ISKLADVRMGEQT---HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209
            + +    M E     + +  RN     V   N+++  YA  G +++A  VF+ M ++D 
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348

Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269
           V+W +++  ++  G   E L LF EM   G   +      + S CA++ AL  G + H  
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329
           + + G      V NALL  Y KCG +  A+  F EM +R+ VSW+T++ G A +GFGKEA
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389
           LE+F  M      P ++T VGVL ACSH G+V++G SYF  M  ++G+  K EH+ CM+D
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449
           LLGRAG + +A++ +++M   P++ +W  LLGA  IH +  +   A   + +LEP+++G 
Sbjct: 529 LLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGM 588

Query: 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEI 509
           YVLLSN+YA   +W + +++R  M +  VKK PG S +E+ N+V  F  GD  HP+ E+I
Sbjct: 589 YVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKI 648

Query: 510 HAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRV 569
           +A L ++  ++K  GYV  T+ V  D+EEEEKE  L YHSEK+A+A+ ++N  PG P+RV
Sbjct: 649 YAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRV 708

Query: 570 VKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +KNLRVC DCH A K IS +  R I++RD +RFHHF+ G CSC DYW
Sbjct: 709 IKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFR 233
            E  V   N  +  +   G V DA ++F  M  R    +N+++ G+++NG+   A +LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN-----NALLDF 288
            +      PD Y+  +L  A A   +LA  R         GL D + V      N ++  
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADAR---------GLFDEMPVRDSVTYNVMISS 140

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
           ++  G++  A+  F    +++AVSW+ ++     NG  +EA  LF
Sbjct: 141 HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 185


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/543 (38%), Positives = 316/543 (58%), Gaps = 11/543 (2%)

Query: 76  PDLGKYLIYAIVSL-SFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           PD+  Y I     L +  +  A   F  +   +  +WNTMI G++++     A EL+  M
Sbjct: 66  PDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA-IRNGFESLVFVQNSLVHMYAAFGH 193
            V     ++ ++  ++    +  D+ + +Q   VA +R+     V    +++  +  FG 
Sbjct: 126 PVR----NSVSWNAMISGYVESGDLDLAKQLFEVAPVRS-----VVAWTAMITGFMKFGK 176

Query: 194 VKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
           ++ A K FE M  ++LV WN++I G+  N +    L LF+ M   G  P+  ++ S+   
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           C+ L AL LG++ H  + K  +S N+    +LL  Y KCG +  A ++F  M +++ V+W
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTW 296

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           + ++ G A +G G++AL LF +M   G  P  +TFV VL AC+H G VD G  YF  M  
Sbjct: 297 NAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +YG+  K +H+ C+VDLLGR G + +A + I+ M   P++ I+ TLLGAC IH +  +AE
Sbjct: 357 DYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAE 416

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
            A   LL L+P+ +  YV L+N+YA   RW +V  VRR+M   +V KTPG+S +E+ + V
Sbjct: 417 FAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVV 476

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
            EF  GDR HP+   IH  L E+ +K++L GYVP  E    D+ EE+K+  L  HSEK+A
Sbjct: 477 HEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLA 536

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           IA+ L+    GTP+RV KNLRVC DCH A K IS +  R I+VRD +RFHHF+ G CSC 
Sbjct: 537 IAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCG 596

Query: 614 DYW 616
           DYW
Sbjct: 597 DYW 599



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 75/316 (23%)

Query: 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS-NGKPNEALTLFRE 234
           S V   N ++  +   G +  A +VFE M+ +  V WNS++ G+++  GK   A  LF  
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 235 MASEGVEPDGY----------------------------------TMVSLFS-------- 252
           +     EPD +                                  TM+S FS        
Sbjct: 63  IP----EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQA 118

Query: 253 --------------------ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292
                                  E G L L ++    +++V    +V    A++  + K 
Sbjct: 119 RELFLVMPVRNSVSWNAMISGYVESGDLDLAKQ----LFEVAPVRSVVAWTAMITGFMKF 174

Query: 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
           G I  A++ F EM  +N V+W+ ++ G   N   +  L+LFK M   GF P   +   VL
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234

Query: 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP-P 411
             CS+   +  G     ++  +  +   I     ++ +  + G ++ A++    ++MP  
Sbjct: 235 LGCSNLSALKLG-KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF--LVMPQK 291

Query: 412 NAVIWRTLLGACTIHG 427
           + V W  ++     HG
Sbjct: 292 DVVTWNAMISGYAQHG 307


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 315/522 (60%), Gaps = 8/522 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ +   ++ +WNTM+ G ++S     AVE    + ++    ++ ++  ++   + 
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSG----AVEEAKAVFLAMPVRNSVSWNAMVSGFAC 154

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
             D+   E+    A   G   L     ++V  Y   G+V  A + FE M  R+LV+WN+V
Sbjct: 155 SRDMSAAEEWFRNAPEKGDAVL---WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAV 211

Query: 216 INGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           + G+  N   ++AL LFR M  E  V+P+  T+ S+   C+ L AL  G++ H +  K+ 
Sbjct: 212 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 271

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           LS N+ V  +L+  Y KCG + +A ++F EM  R+ V+W+ ++ G A +G GKEA+ LF+
Sbjct: 272 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 331

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
            M+  G  P  +TFV VL AC H G+ D G   F+ M++ YGI P+++H+ CMVDLL RA
Sbjct: 332 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRA 391

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G +++A + I++M   P+   + TLL AC ++ +   AE+A   L++ +P+ +G YV L+
Sbjct: 392 GKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLA 451

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   +W +V  VRR M    V KTPG+S +E+   + EF   DR HPQ   IH  L 
Sbjct: 452 NIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLG 511

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           ++ +++K  GYVP  + V  D++E  K   L  HSEK+AI+F L++TAPG  +R+ KNLR
Sbjct: 512 QLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLR 571

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           VC DCH A K+ISK+  REI++RD +RFHHF+ GHCSC DYW
Sbjct: 572 VCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 140 KPDTHTYPFLL----KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
           +  T TY  LL    +A+ +LAD R     H        +++ +  N+L+  + A G   
Sbjct: 45  RKTTATYNCLLAGYARALGRLADAR-----HLFDRIPTPDAVSY--NTLLSCHFASGDAD 97

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
            A ++F  M  RD+V+WN++++G + +G   EA  +F  M           MVS F+   
Sbjct: 98  GARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN-SVSWNAMVSGFACSR 156

Query: 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           ++ A      A  +        +  +  A++  Y   G ++ A   F  M  RN VSW+ 
Sbjct: 157 DMSA------AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNA 210

Query: 316 LVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVGVLYACSH 357
           +V G   N    +AL LF+ M       P   T   VL  CS+
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 60  KQVHAFSIRHGVPLN-NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           KQ+H + ++  +PL+ N  +G  L+ ++      +S A  +F  +   ++  WN MI GY
Sbjct: 261 KQIHQWCMK--LPLSRNLTVGTSLV-SMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY 317

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           A+  +   A+ L+ +M   G++P+  T+  +L A
Sbjct: 318 AQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/628 (35%), Positives = 343/628 (54%), Gaps = 52/628 (8%)

Query: 23  VKSLYHSTPASQEN--PITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGK 80
           V+S Y + P+ Q+   P+  ++ +C+    +            A  + HG+   N     
Sbjct: 47  VRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDG----------ALRVFHGMRAKNTITWN 96

Query: 81  YLIYAIVSLSFPMSYAHNIFSHVQDPNIFT------------------------------ 110
            L+  I      M  AH +F  + +P+ F+                              
Sbjct: 97  SLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAA 156

Query: 111 -WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
            WNTMI GYA       A EL+  M    ++ +  ++  ++    +  D+        VA
Sbjct: 157 SWNTMITGYARRGEMEKARELFYSM----MEKNEVSWNAMISGYIECGDLEKASHFFKVA 212

Query: 170 IRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEA 228
              G    V    +++  Y     V+ A  +F+ M+  ++LV WN++I+G+  N +P + 
Sbjct: 213 PVRG----VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDG 268

Query: 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288
           L LFR M  EG+ P+   + S    C+EL AL LGR+ H  V K  L ++V    +L+  
Sbjct: 269 LKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISM 328

Query: 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348
           Y KCG +  A ++F  M+K++ V+W+ ++ G A +G   +AL LF+EM      P  +TF
Sbjct: 329 YCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITF 388

Query: 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408
           V VL AC+H G+V+ G +YF+ M  +Y + P+ +H+ CMVDLLGRAG +++A + I++M 
Sbjct: 389 VAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMP 448

Query: 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468
             P+A ++ TLLGAC +H +  +AE A   LLQL  +++  YV L+N+YA + RW +V  
Sbjct: 449 FRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVAR 508

Query: 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPR 528
           VR+ M +  V K PG+S +E+ N+V  F   DR HP+ + IH  L E+ KK+KL GY P 
Sbjct: 509 VRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPE 568

Query: 529 TENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISK 588
            E    ++EEE+KE  L +HSEK+A+AF  +    G+ ++V KNLR+C DCH AIK IS+
Sbjct: 569 LEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISE 628

Query: 589 VYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 629 IEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/525 (38%), Positives = 310/525 (59%), Gaps = 10/525 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           M  A  +F      ++FTW  ++ GYA++     A  ++  M   + +  +     ++ +
Sbjct: 115 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 174

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
            +   A     E  + +  RN     V   N+++  YA  G +++A  VF+ M ++D V+
Sbjct: 175 RMMDEAK----ELFNMMPCRN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 225

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W +++  ++  G   E L LF EM   G   +      + S CA++ AL  G + H  + 
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 285

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           + G      V NALL  Y KCG +  A+  F EM +R+ VSW+T++ G A +GFGKEALE
Sbjct: 286 RAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALE 345

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +F  M      P ++T VGVL ACSH G+V++G SYF  M  ++G+  K EH+ CM+DLL
Sbjct: 346 IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLL 405

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRAG + +A++ +++M   P++ +W  LLGA  IH +  +   A   + +LEP+++G YV
Sbjct: 406 GRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYV 465

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+YA   +W + +++R  M +  VKK PG S +E+ N+V  F  GD  HP+ E+I+A
Sbjct: 466 LLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYA 525

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L ++  ++K  GYV  T+ V  D+EEEEKE  L YHSEK+A+A+ ++N  PG P+RV+K
Sbjct: 526 FLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIK 585

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH A K IS +  R I++RD +RFHHF+ G CSC DYW
Sbjct: 586 NLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 22/250 (8%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241
           N ++  +A  G V  A   F+L  E+D V+WN ++  +  NG+  EA  LF    +   E
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTE 65

Query: 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301
            D  +  +L S   + G ++  R     +       +V   N ++  Y++ G ++ A+R+
Sbjct: 66  WDVISWNALMSGYVQWGKMSEARELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRL 121

Query: 302 FREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361
           F     R+  +W+ +V G A NG  +EA  +F  M         V++  ++ A     M+
Sbjct: 122 FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMM 177

Query: 362 DEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           DE        K+ + +MP   +  +  M+    +AG++++A      M    +AV W  +
Sbjct: 178 DEA-------KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-KDAVSWAAM 229

Query: 420 LGACTIHGHS 429
           L A +  G S
Sbjct: 230 LAAYSQGGCS 239


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 318/560 (56%), Gaps = 43/560 (7%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
           +QVH   I  G     P++  Y+  A+V +      ++ A  I   ++  ++  WN+MI 
Sbjct: 256 RQVHGCIIWSGF---GPNV--YVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIV 310

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
           G         A+ L+ KMH   I+ D  TYP +LK+++   ++++GE  HS+ I+ GF++
Sbjct: 311 GCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDA 370

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
              V N+LV MYA  G++  A  VF  + ++D+++W S++ G+  NG   +AL LF +M 
Sbjct: 371 CKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMR 430

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           +  V+ D + +  +FSACAEL  +  GR+ H    K      ++  N+L+  Y+KCG + 
Sbjct: 431 TARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLE 490

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
            A RVF  M  RN +SW+ ++VG A N                                 
Sbjct: 491 DAIRVFDSMETRNVISWTAIIVGYAQN--------------------------------- 517

Query: 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
             G+V+ G SYF+ M+  YGI P  +H+ CM+DLLGRAG + +A   +  M + P+A IW
Sbjct: 518 --GLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIW 575

Query: 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476
           ++LL AC +HG+  + E A   L++LEP +S  YVLLSN+++   RW +   +RR M   
Sbjct: 576 KSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTM 635

Query: 477 RVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADI 536
            + K PG+S +E+ ++V  F   DRSHP   EI++ + E+   +K  G+VP       D+
Sbjct: 636 GINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDM 695

Query: 537 EEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVV 596
           +EE KE +L+YHSEK+A+AF L+  A G P+R+ KNLRVC DCH A+K IS ++ R I++
Sbjct: 696 DEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHIIL 755

Query: 597 RDRSRFHHFKDGHCSCRDYW 616
           RD + FHHF +G CSC D+W
Sbjct: 756 RDLNCFHHFIEGKCSCGDFW 775



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 172/327 (52%), Gaps = 5/327 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+     N  TW++++ GY ++   +  +  +S+M   G KP  +T   +L+A S 
Sbjct: 87  ARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACST 146

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV-FELMSERDLVAWNS 214
           L+ +  G+  H  AI+   E+ +FV   LV MY+    + +A  + F L   ++ V W +
Sbjct: 147 LSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTA 206

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++ G+A NG+  +A+  F+EM ++G+E + +T  S+ +AC  + A A GR+ H  +   G
Sbjct: 207 MLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSG 266

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
              NV V +AL+D Y+KCG + +A+ +   M   + V W++++VG   +G+ +EAL LF 
Sbjct: 267 FGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFH 326

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK-RMKDEYGIMPKIEHFGCMVDLLGR 393
           +M        + T+  VL + + C  +  G S     +K  +     + +   +VD+  +
Sbjct: 327 KMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSN--ALVDMYAK 384

Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLL 420
            G +  A + + N ++  + + W +L+
Sbjct: 385 QGNLSCALD-VFNKILDKDVISWTSLV 410



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
           +  N ++  YA  G++ +A K+F     ++ + W+S+++G+  NG   E L  F +M S+
Sbjct: 69  YTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSD 128

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
           G +P  YT+ S+  AC+ L  L  G+  H Y  K+ L  N+ V   L+D YSKC  ++ A
Sbjct: 129 GQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEA 188

Query: 299 QRVFREM-RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           + +F  +  ++N V W+ ++ G A NG   +A++ FKEM   G      TF  +L AC+ 
Sbjct: 189 EYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTS 248

Query: 358 CGMVDEGFSYFKRMKD---EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
                  +++ +++       G  P +     +VD+  + G +  A   +  M +  + V
Sbjct: 249 I----SAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEI-DDVV 303

Query: 415 IWRTLLGACTIHGH 428
            W +++  C  HG+
Sbjct: 304 CWNSMIVGCVTHGY 317


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 304/526 (57%), Gaps = 2/526 (0%)

Query: 92  PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
            M  A  +F  V D ++  +  +I GY +      A+E++  M  S IKP+ +T   +L 
Sbjct: 152 KMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLV 211

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
           +   L D+  G+  H + +++G ES+V  Q SL+ MY+    V+D+ KVF  ++    V 
Sbjct: 212 SCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVT 271

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           W S I G   NG+   AL++FREM    + P+ +T  S+  AC+ L  L  G + H    
Sbjct: 272 WTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTV 331

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
           K+G+  N  V+ AL+  Y KCG +  A+ VF  + + + VS +T++   A NGFG EALE
Sbjct: 332 KLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALE 391

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF+ M+  G  P  VTF+ +L AC++ G+V+EG   F  +++ + I    +H+ CM+DLL
Sbjct: 392 LFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLL 451

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
           GRA   ++A   I+     P+ + WRTLL AC IHG   +AE     +L   P+  G ++
Sbjct: 452 GRAKRFEEAAMLIEEG-KNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHI 510

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LL+N+YA   +W NV E++      R+KKTP  S V++   V  F  GD SHP+  EI  
Sbjct: 511 LLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISE 570

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNT-APGTPVRVV 570
           ML E+ +K+   GY P T+ V  D+EEE+K  AL YHSEK+AIAF L  T    T +R+ 
Sbjct: 571 MLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIF 630

Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           KNLRVC DCH  IK +S +  R+I+ RD  RFHHFK G CSC+DYW
Sbjct: 631 KNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 197/389 (50%), Gaps = 8/389 (2%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           LK +H   ++ G   +    G  LI   +  S  ++ A  +F  + + +I TWN+MI  +
Sbjct: 20  LKSLHTHILKSGSLFSF--FGHKLIDGYIKCSV-ITEARKLFDEMPNRHIVTWNSMISSH 76

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-SL 177
                   A+ELY  M   G+ PD +T+  + KA S++   R G++ H +A+  GFE S 
Sbjct: 77  VSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSD 136

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
            FV   +V MYA FG +KDA  VF+ + ++D+V + ++I G+   G   EAL +F +M  
Sbjct: 137 GFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVG 196

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             ++P+ YT+ S+  +C  LG L  G+  H  V K GL   V    +LL  YSKC ++  
Sbjct: 197 SRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVED 256

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           + +VF  +   + V+W++ +VGL  NG  + AL +F+EM      P   TF  +L+ACS 
Sbjct: 257 SIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSS 316

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
             M++ G      +  + G+         ++ L G+ G V++A    ++ L   + V   
Sbjct: 317 LAMLEAG-EQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFES-LTELDVVSIN 374

Query: 418 TLLGACTIH--GHSAIAEIARSTLLQLEP 444
           T++ A   +  GH A+    R   L  +P
Sbjct: 375 TMIYAYAQNGFGHEALELFERMKKLGHKP 403


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 312/558 (55%), Gaps = 22/558 (3%)

Query: 75   NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
            N  +G YL    V  S  M      F  +   ++ +WNT++ G  +      A+E    M
Sbjct: 460  NIMIGAYLRAGDVEKSLDM------FRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCM 513

Query: 135  HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
               G +    T+   L   S L+ V +G Q H + ++ GF+S  F+++SLV MY   G +
Sbjct: 514  VECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRM 573

Query: 195  KDACKVFELMS----------------ERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              A  +   +                 +  +V+W S+++G+  NGK  + L  FR M  E
Sbjct: 574  DKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRE 633

Query: 239  GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
             V  D  T+ ++ SACA  G L  GR  H YV K+G   +  V ++L+D YSK G +  A
Sbjct: 634  LVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDA 693

Query: 299  QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
              VFR+  + N V W++++ G A++G G  A+ LF+EM   G +P EVTF+GVL ACSH 
Sbjct: 694  WMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHA 753

Query: 359  GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
            G+++EG  YF+ MKD Y I P +EH   MVDL GRAG + +   +I    +     +W++
Sbjct: 754  GLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKS 813

Query: 419  LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
             L +C +H +  + +     LLQ+ P   G YVLLSN+ A   RW     VR  M +  V
Sbjct: 814  FLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGV 873

Query: 479  KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
            KK PG S ++L +++  F MGDRSHPQ +EI++ L  +  +LK  GY    + V  D+EE
Sbjct: 874  KKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEE 933

Query: 539  EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
            E+ E  +S+HSEK+A+ F ++NTA  TP+R++KNLR+C DCH  IK  S++  REI+VRD
Sbjct: 934  EQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRD 993

Query: 599  RSRFHHFKDGHCSCRDYW 616
              RFHHFK G CSC DYW
Sbjct: 994  IHRFHHFKHGSCSCGDYW 1011



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 197/429 (45%), Gaps = 63/429 (14%)

Query: 53  ASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN 112
           ++S   L  +HA  +++G  L   +   +L+  + + S  M++A  +F  +   N  TW 
Sbjct: 302 SNSPPPLGTLHALYVKNG-SLQTLNPANHLL-TLYAKSNNMAHAQKLFDEIPQRNTQTWT 359

Query: 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN 172
            +I G+A + +  +   L+ +M   G  P+ +T   +LK  S   ++++G+  H+  +RN
Sbjct: 360 ILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRN 419

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           G +  V + NS++ +Y      + A ++FELM+E D+V+WN +I  +   G   ++L +F
Sbjct: 420 GIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMF 479

Query: 233 REMASEGVEP-----DG--------------YTMVSL---FSA---------CAELGALA 261
           R +  + V       DG              Y MV     FSA          + L  + 
Sbjct: 480 RRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVE 539

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE-----MRKRNA------ 310
           LGR+ H  V K G   +  + ++L++ Y KCG +  A  + R+     +RK NA      
Sbjct: 540 LGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE 599

Query: 311 -----VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
                VSW ++V G   NG  ++ L+ F+ M     V    T   ++ AC++ G+++ G 
Sbjct: 600 PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFG- 658

Query: 366 SYFKRMKDEYGIMPKIEH------FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
                 +  +  + KI H         ++D+  ++G +  A+   +     PN V+W ++
Sbjct: 659 ------RHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQS-NEPNIVMWTSM 711

Query: 420 LGACTIHGH 428
           +    +HG 
Sbjct: 712 ISGYALHGQ 720


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 334/558 (59%), Gaps = 4/558 (0%)

Query: 62  VHAFSIRHGVPLNNPD--LGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +HA+ +R  +  N     +G  L+         + YA  +F  +   N  TW+ +I G+ 
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCK-QLVYACRVFHGMPVRNDVTWSALIGGFV 282

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
                  A  L+  M V G+   + T     L+  + LAD+ MG Q H++  ++G  + +
Sbjct: 283 LCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADL 342

Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
              NSL+ MYA  G + +A   F+ ++ +D +++ ++++G   NGK  EA  +F++M + 
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQAC 402

Query: 239 GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
            +EPD  TMVSL  AC+ L AL  G+ +H  V   GL+   ++ N+L+D Y+KCG I  +
Sbjct: 403 NMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLS 462

Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
           ++VF +M  R+ VSW+T++ G  ++G GKEA  LF  M+  GF P +VTF+ ++ ACSH 
Sbjct: 463 RQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHS 522

Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
           G+V EG  +F  M  +YGI+P++EH+ CMVDLL R GL+ +AY++IQ+M +  +  +W  
Sbjct: 523 GLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGA 582

Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
           LLGAC IH +  + +     + +L P+ +G++VLLSN+++   R+    EVR     +  
Sbjct: 583 LLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGF 642

Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
           KK+PG+S +E+   +  F  GD+SHP + +I+  L  I   +K  GY   T  V  D+EE
Sbjct: 643 KKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEE 702

Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
           EEKE AL YHSEK+AIAF +++      + V KNLRVC DCH AIK ++ V +R I+VRD
Sbjct: 703 EEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRD 762

Query: 599 RSRFHHFKDGHCSCRDYW 616
            +RFHHFK+G CSC ++W
Sbjct: 763 TNRFHHFKNGQCSCGNFW 780



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +  P+   +N +IR Y+       A++LY  M    + P+ +T+PF+LKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L D+R G   H+ A   G  + +FV  +L+ +Y        A  VF  M  RD+VAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 213 NSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           N+++ G+A++G  + A+    +M    G+ P+  T+VSL    A+ GAL  G   H Y  
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 272 KVGLSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           +  L  N   V +  ALLD Y+KC  ++ A RVF  M  RN V+WS L+ G  +     E
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 329 ALELFKEMEIGGFVPGEVTFVG-VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           A  LFK+M + G      T V   L  C+    +  G +    +  + GI   +     +
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG-TQLHALIAKSGIHADLTASNSL 348

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           + +  +AGL+ +A  +   + +  + + +  LL  C  +G +
Sbjct: 349 LSMYAKAGLINEATMFFDEIAV-KDTISYGALLSGCVQNGKA 389



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P  H  PF     ++L     G  ++ V  +  ++  +         + + G +  A +V
Sbjct: 4   PRGHLRPFSAATAARLHRPPSGSISYEVKDKKQWQQEL-------EQHISRGQLALARQV 56

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ +   D  A+N++I  ++  G  + A+ L+R M    V P+ YT   +  AC+ L  L
Sbjct: 57  FDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDL 116

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H +    GL  ++ V+ AL+D Y +C     A+ VF +M  R+ V+W+ ++ G 
Sbjct: 117 RAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGY 176

Query: 321 AVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           A +G    A+    +M+  GG  P   T V +L   +  G + +G S
Sbjct: 177 ANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 327/596 (54%), Gaps = 32/596 (5%)

Query: 50  QVCASSKH--KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN 107
           ++ +S KH   L Q+HA  I  G   ++       +Y   SL      A ++F    +P+
Sbjct: 57  RLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY---SLFHKCDLARSVFDSTPNPS 113

Query: 108 IFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVR------ 160
              WN+MIR Y  S     A+E+Y  M    G++ D      L+   SK+ D++      
Sbjct: 114 RILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVF 173

Query: 161 -----------------MGEQTHSVAIRNGFESLVFVQN-SLVHMYAAFGHVKDACKVFE 202
                            + +       R  F+ +V   + S   M A + H     +V E
Sbjct: 174 DKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 233

Query: 203 LMSERDL--VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           L  +  L  V WN +I  +  NG   EA++ F +M  E   P+  T VS+  A A L A 
Sbjct: 234 LFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 293

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             G   H  + ++G   N  V N+L+D Y+KCG +  ++++F EM  ++ VSW+ ++ G 
Sbjct: 294 REGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGY 353

Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
           AV+G G  A+ LF  M+        V+FV VL AC H G+V+EG   F  M D+Y I P 
Sbjct: 354 AVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPD 413

Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
           +EH+ CMVDLLGRAGL  +   +I+ M + P+A +W  LLG+C +H +  + E+A   L+
Sbjct: 414 LEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLV 473

Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
           +LEP++   +V+LS++YA   RW +  + R  M    +KKTPG S VEL N+V  F +GD
Sbjct: 474 KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGD 533

Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVN 560
           +SHPQ E +H +   + +K++  GYVP    V  ++EEE+KE  L  HSE++AI F L+N
Sbjct: 534 KSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLN 593

Query: 561 TAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           T PG+ +++VKNLRVCADCH   K ISK+ +R I+VRD +RFHHF+DG CSC DYW
Sbjct: 594 TPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/525 (39%), Positives = 322/525 (61%), Gaps = 1/525 (0%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLK 151
           + YA  +F  +   N  TW+ +I G+        A  L+  M V G+   + T     L+
Sbjct: 256 LVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
             + LAD+ MG Q H++  ++G  + +   NSL+ MYA  G + +A   F+ ++ +D ++
Sbjct: 316 VCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           + ++++G   NGK  EA  +F++M +  +EPD  TMVSL  AC+ L AL  G+ +H  V 
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
             GL+   ++ N+L+D Y+KCG I  +++VF +M  R+ VSW+T++ G  ++G GKEA  
Sbjct: 436 IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATT 495

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           LF  M+  GF P +VTF+ ++ ACSH G+V EG  +F  M  +YGI+P++EH+ CMVDLL
Sbjct: 496 LFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLL 555

Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
            R GL+ +AY++IQ+M +  +  +W  LLGAC IH +  + +     + +L P+ +G++V
Sbjct: 556 ARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFV 615

Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
           LLSN+++   R+    EVR     +  KK+PG+S +E+   +  F  GD+SHP + +I+ 
Sbjct: 616 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYH 675

Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
            L  I   +K  GY   T  V  D+EEEEKE AL YHSEK+AIAF +++      + V K
Sbjct: 676 ELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTK 735

Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           NLRVC DCH AIK ++ V +R I+VRD +RFHHFK+G CSC ++W
Sbjct: 736 NLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           ++ A  +F  +  P+   +N +IR Y+       A++LY  M    + P+ +T+PF+LKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L D+R G   H+ A   G  + +FV  +L+ +Y        A  VF  M  RD+VAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 213 NSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
           N+++ G+A++G  + A+    +M    G+ P+  T+VSL    A+ GAL  G   H Y  
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 272 KVGLSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
           +  L  N   V +  ALLD Y+KC  ++ A RVF  M  RN V+WS L+ G  +     E
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 329 ALELFKEMEIGGFVPGEVTFVG-VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           A  LFK+M + G      T V   L  C+    +  G +    +  + GI   +     +
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG-TQLHALIAKSGIHADLTASNSL 348

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           + +  +AGL+ +A  +   + +  + + +  LL  C  +G +
Sbjct: 349 LSMYAKAGLINEATMFFDEIAV-KDTISYGALLSGCVQNGKA 389



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
           P  H  PF     ++L     G  ++ V  +  ++  +         + + G +  A +V
Sbjct: 4   PRGHLRPFSAATAARLHRPPSGSISYEVKDKKQWQQEL-------EQHISRGQLALARQV 56

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260
           F+ +   D  A+N++I  ++  G  + A+ L+R M    V P+ YT   +  AC+ L  L
Sbjct: 57  FDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDL 116

Query: 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
             GR  H +    GL  ++ V+ AL+D Y +C     A+ VF +M  R+ V+W+ ++ G 
Sbjct: 117 RAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGY 176

Query: 321 AVNGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSHCGMVDEGFS 366
           A +G    A+    +M+  GG  P   T V +L   +  G + +G S
Sbjct: 177 ANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 338/603 (56%), Gaps = 45/603 (7%)

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV--QDPNIFTWNTM 114
           H  +++HA     G+           ++   + S  ++ A  +F  +   D +   W T+
Sbjct: 23  HPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTL 82

Query: 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF 174
           +  ++     + +++L+ +M    ++ D  +   L    +KL D+R GEQ H VA++ GF
Sbjct: 83  LSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGF 142

Query: 175 ESLVFVQNSLVHMYAAFGHV-------------------------------KDACKVFEL 203
            + V V N+L+ MY   G V                               K   +VF+ 
Sbjct: 143 LTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDE 202

Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGALAL 262
           M ER++VAW  ++ G+   G   E L L  EM    G   +  T+ S+ SACA+ G L +
Sbjct: 203 MPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVI 262

Query: 263 GRRAHTYVWKVGLS-------DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           GR  H Y  K  +        D V V  AL+D Y+KCG I ++ +VFR MRKRN V+W+ 
Sbjct: 263 GRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNA 322

Query: 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375
           L  GLA++G G+  +++F EM +    P ++TF  +L ACSH GMVDEG+  F  ++  Y
Sbjct: 323 LFSGLAMHGKGRMVIDMFPEM-VREVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQ-FY 380

Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435
           G+ PK++H+ CMVD+LGRAG +++A   ++ M +PPN V+  +LLG+C++HG   IAE  
Sbjct: 381 GLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERI 440

Query: 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFE 495
           +  L+Q+ P H+   +L+SN+Y  E R      +R ++    ++K PG S + + + V  
Sbjct: 441 KRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHR 500

Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE--EEKEDALSYHSEKIA 553
           F  GDRSHP+T+E++  L E+ ++++  GYVP    + +  E   EEKE AL  HSEK+A
Sbjct: 501 FSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLA 560

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           + F L+ T P TP+ V KNLR+C DCH A+K++SKVY REI++RDR+RFH FK G CSC 
Sbjct: 561 VCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCS 620

Query: 614 DYW 616
           DYW
Sbjct: 621 DYW 623


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/512 (38%), Positives = 306/512 (59%), Gaps = 34/512 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAIS 154
           A+ +F  +Q  ++ +WN MI G+A +     A++++ ++  +   KPD  T   +L ++ 
Sbjct: 11  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 70

Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
           K        +   +A+  G                          VF+ M    L++WN+
Sbjct: 71  K-------ARVEDIALLKG--------------------------VFDEMRFTGLISWNA 97

Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
           ++  + +N    EA+ LF  M  +G+EPD  T+ ++  +C E+ AL+LG+R H  + +  
Sbjct: 98  MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 157

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
           +  ++ + NAL+D Y+ CG +  A+ VF  M  R+ VSW++++     +G G+EA++LF+
Sbjct: 158 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 217

Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
           +M   G  P  + FV +L ACSH G++D G  YF  M  E+ I PK+EH+ CMVDLLGRA
Sbjct: 218 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRA 277

Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
           G +++AY++I  M + PN  +W  LLGAC IH +  I  +A  +LL+L PK +G YVLLS
Sbjct: 278 GCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLS 337

Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
           N+YA   RW +V  VR  M  + +KK PG S  ELG+ V  F +GD SHPQ++ I+  L+
Sbjct: 338 NIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLS 397

Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
           E+ ++++  GY P  E    D+EEE+KE  LS HSEK+AIAF+L+NT PGTP+R+  NLR
Sbjct: 398 ELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLR 457

Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
            C+DCH A KLIS +  REI+++D +R H+ K
Sbjct: 458 TCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 7/189 (3%)

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135
           P +GK  +  I  L         +F  ++   + +WN M+  Y  +   + AVEL+ +M 
Sbjct: 67  PSMGKARVEDIALLK-------GVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQ 119

Query: 136 VSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195
             GI+PD  T   +L +  +++ + +G++ H V  R    S + ++N+L+ MYA  G +K
Sbjct: 120 KDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLK 179

Query: 196 DACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
           +A  VF+ M  RD+V+W S+I+ +  +G   EA+ LF +M  +G+EPD    V++ +AC+
Sbjct: 180 EARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACS 239

Query: 256 ELGALALGR 264
             G L +G+
Sbjct: 240 HAGLLDMGK 248



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 36/243 (14%)

Query: 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGY 245
           MYA  G   DA ++FE M  RD+V+WN++I+GFA  G    A+ +FRE+ A +  +PD  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
           TM S+  +                  K  + D                 I   + VF EM
Sbjct: 61  TMASILPSMG----------------KARVED-----------------IALLKGVFDEM 87

Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365
           R    +SW+ ++     N    EA+ELF  M+  G  P  VT   VL +C     +  G 
Sbjct: 88  RFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 147

Query: 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425
              + +K    +   +     ++D+    G +K+A +   +M    + V W +++ A   
Sbjct: 148 RIHEVIKRRR-MCSSMLLENALMDMYANCGCLKEARDVFDSM-GTRDVVSWTSIISAYGR 205

Query: 426 HGH 428
           HGH
Sbjct: 206 HGH 208


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 320/557 (57%), Gaps = 13/557 (2%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           KQ+H+  +  G+  N+  +G  L+   +  S  +  A   F  +  PN+ +W ++I G++
Sbjct: 337 KQIHSRVVMAGLE-NDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFS 395

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179
           E      +++++  M   G++P++ T   +L A   +  +    + H   I+N  ++ V 
Sbjct: 396 EHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVV 455

Query: 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
           V N+LV  YA  G V DA  V  +M  RD++ + S+       G    AL +   M  + 
Sbjct: 456 VGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDD 515

Query: 240 VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299
           V  DG+++ S  SA A +  +  G++ H Y  K GL   ++V+N L+D Y KCG I  A 
Sbjct: 516 VRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAH 575

Query: 300 RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359
           R F E+ + +AVSW+ L+ GLA NG    AL  F++M + G  P ++T + VLYACSH G
Sbjct: 576 RSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGG 635

Query: 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419
           +VD G  YF+ M++++GI P+++H+ C+VDLLGRAG +++A   I+ M   P+A+I++TL
Sbjct: 636 LVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTL 695

Query: 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479
           LGAC +HG+  + E      L+L+P     YVLL+NLY    R    ++ RR M +  V+
Sbjct: 696 LGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVR 755

Query: 480 KTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE 539
           K PG S +E  N V  F  GD SHPQ  +IH  +  +  + + +G +   EN        
Sbjct: 756 KNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQG-IWYQEN-------- 806

Query: 540 EKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDR 599
               AL++HSEK+A+AF L++T P  P+R++KN+R+C DCH  I  ++++  REI+VRD 
Sbjct: 807 ---RALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDG 863

Query: 600 SRFHHFKDGHCSCRDYW 616
           +RFH FK G CSCR YW
Sbjct: 864 NRFHSFKKGECSCRGYW 880



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 1   MTSWLM----HSKQPSYEEISDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSK 56
           + SW M    + K  ++EE  +L     S+  S     E  +++ +R C  L +    ++
Sbjct: 81  VASWTMLMSAYGKIGNHEEALEL---FDSMLISGEYPNEFTLSTALRSCSALREFNHGTR 137

Query: 57  HKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIR 116
            +     A   + G   +NP LG  LI    S       A+ +F ++ + +I +W  M+ 
Sbjct: 138 FQ-----ALVTKSGFD-SNPVLGSALI-DFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVS 190

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            + E+ +   A++LY +M  +G+ P+  T+  LL A S L  +  G+  H+  +    E 
Sbjct: 191 SFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIEL 249

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            + ++ +LV MY     ++DA KV +L  E D+  W ++I+GF  + K  EA+T F EM 
Sbjct: 250 NLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEME 309

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
           + GV P+ +T   + +AC+ + AL LG++ H+ V   GL ++V+V N+L+D Y KC  +I
Sbjct: 310 TSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMI 369

Query: 297 A-AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355
             A R FR +   N +SW++L+ G + +G  +E++++F  M+  G  P   T   +L AC
Sbjct: 370 EDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 194/385 (50%), Gaps = 21/385 (5%)

Query: 59  LKQVHAF----SIRHGVPLNNPDL------GKYLIYAIVSL---SFPMSYAHNIFSHVQD 105
           LK + +F    S+R G+ +++P +        +L   ++SL    F ++ A  +F  +  
Sbjct: 19  LKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPC 78

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ +W  ++  Y +  N   A+EL+  M +SG  P+  T    L++ S L +   G + 
Sbjct: 79  RDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRF 138

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
            ++  ++GF+S   + ++L+  Y+  G  ++A +VFE M+  D+V+W  +++ F   G  
Sbjct: 139 QALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSW 198

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR--RAHTYVWKVGLSDNVNVNN 283
           ++AL L+  M   GV P+ +T V L +A + LG L  G+   AH  +W++ L  N+ +  
Sbjct: 199 SQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIEL--NLVLKT 255

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           AL+D Y KC  I  A +V +   + +   W+ ++ G   +   +EA+  F EME  G VP
Sbjct: 256 ALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVP 315

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR-AGLVKQAYE 402
              T+ G+L ACS    +D G     R+    G+   +     +VD+  + + +++ A  
Sbjct: 316 NNFTYSGILNACSSILALDLGKQIHSRVV-MAGLENDVSVGNSLVDMYMKCSNMIEDAVR 374

Query: 403 YIQNMLMPPNAVIWRTLLGACTIHG 427
             +  +  PN + W +L+   + HG
Sbjct: 375 AFRG-IASPNVISWTSLIAGFSEHG 398


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 336/591 (56%), Gaps = 40/591 (6%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF---PMSYAHNIFSHVQDPNIFTWNTMIR 116
           ++V+AF    G+ +N+      ++ A+V +      +  A  +F      N+   N M  
Sbjct: 256 EKVYAFIRNSGIEVND-----LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310

Query: 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            Y        A+ +++ M  SG++PD  +    + + S+L ++  G+  H   +RNGFES
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370

Query: 177 LVFVQNSLVHMY-------AAF------------------------GHVKDACKVFELMS 205
              + N+L+ MY        AF                        G V  A + FE M 
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMP 430

Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGVEPDGYTMVSLFSACAELGALALGR 264
           E+++V+WN++I+G        EA+ +F  M S EGV  DG TM+S+ SAC  LGAL L +
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490

Query: 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG 324
             + Y+ K G+  +V +   L+D +S+CG   +A  +F  +  R+  +W+  +  +A+ G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550

Query: 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
             + A+ELF +M   G  P  V FVG L ACSH G+V +G   F  M   +G+ P+  H+
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
           GCMVDLLGRAGL+++A + I++M M PN VIW +LL AC + G+  +A  A   +  L P
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAP 670

Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHP 504
           + +G YVLLSN+YA   RW ++ +VR +M ++ ++K PG S +++  +  EF  GD SHP
Sbjct: 671 ERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHP 730

Query: 505 QTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPG 564
           +   I AML E++++    G+VP   NV  D++E+EK   LS HSEK+A+A+ L+++  G
Sbjct: 731 EMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKG 790

Query: 565 TPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDY 615
           T +R+VKNLRVC+DCH   K  SKVY+REI++RD +RFH+ + G CSC D+
Sbjct: 791 TTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 172/336 (51%), Gaps = 13/336 (3%)

Query: 25  SLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           SL + +  ++  P  S ++ C T+         +LK  H    + G+  +   + K +  
Sbjct: 24  SLLNQSKCTKATP--SSLKNCKTI--------DELKMFHRSLTKQGLDNDVSTITKLVAR 73

Query: 85  AI-VSLSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142
           +  +     +S+A  +F + +     F +N++IRGYA S     A+ L+ +M  SGI PD
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
            +T+PF L A +K      G Q H + ++ G+   +FVQNSLVH YA  G +  A KVF+
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTL-FREMASEGVEPDGYTMVSLFSACAELGALA 261
            MSER++V+W S+I G+A      +A+ L FR +  E V P+  TMV + SACA+L  L 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
            G + + ++   G+  N  + +AL+D Y KC  I  A+R+F E    N    + +     
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
             G  +EAL +F  M   G  P  ++ +  + +CS 
Sbjct: 314 RQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 49  LQVCASSKHKLK--QVHAFSIRHGVPLNNPDLGKYLIYAIVSL---SFPMSYAHNIFSHV 103
           L  CA S+ K    Q+H   ++ G      DL  ++  ++V        +  A  +F  +
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYA---KDL--FVQNSLVHFYAECGELDSARKVFDEM 195

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMG 162
            + N+ +W +MI GYA       AV+L+ +M     + P++ T   ++ A +KL D+  G
Sbjct: 196 SERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG 255

Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
           E+ ++    +G E    + ++LV MY     +  A ++F+     +L   N++ + +   
Sbjct: 256 EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQ 315

Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
           G   EAL +F  M   GV PD  +M+S  S+C++L  +  G+  H YV + G     N+ 
Sbjct: 316 GLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC 375

Query: 283 NALLDFYSKC-------------------------------GIIIAAQRVFREMRKRNAV 311
           NAL+D Y KC                               G + AA   F  M ++N V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVD-EGFSYFK 369
           SW+T++ GL      +EA+E+F  M+    V  + VT + +  AC H G +D   + Y+ 
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY 495

Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW 416
             K+  GI   +     +VD+  R G  + A   I N L   +   W
Sbjct: 496 IEKN--GIQLDVRLGTTLVDMFSRCGDPESAMS-IFNSLTNRDVSAW 539


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 303/542 (55%), Gaps = 35/542 (6%)

Query: 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA 169
            WN MI GYA     L A E++ KM +S I+ D  T+  ++   +     R+G++ H+  
Sbjct: 256 AWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYF 315

Query: 170 IRN----GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV---------- 215
           ++       +  + V N+L+  Y   G V  A ++F  M ERDLV+WN +          
Sbjct: 316 LKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCM 375

Query: 216 ---------------------INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
                                I+G A  G   EAL  F  M  +G EP  Y       +C
Sbjct: 376 DEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISC 435

Query: 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWS 314
           + LG+L  GR+ H  V + G   +++  NAL+  Y++CG++ AA  +F  M   +A+SW+
Sbjct: 436 SVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWN 495

Query: 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
            ++  L  +G G +A+ELF+EM   G +P  ++F+ V+ ACSH G+V EG  YF  M + 
Sbjct: 496 AMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNV 555

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEI 434
           YG+ P  EH+  ++DLL RAG   +A E +++M   P A IW  LL  C IHG+  +   
Sbjct: 556 YGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIE 615

Query: 435 ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVF 494
           A   L +L+P+H G YVLLSN+YA   +W ++ +VR+ M    VKK PG S +E+ N+V 
Sbjct: 616 AAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVH 675

Query: 495 EFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAI 554
            F +GD +HP+  +I+  L ++  +++  GYVP T+ V  D+E + KE  LS HSEK+A+
Sbjct: 676 SFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAV 735

Query: 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
           A+  +    G  VRV KNLR+C DCH A K +SKV  REIVVRD  RFHHF+DG CSC D
Sbjct: 736 AYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 795

Query: 615 YW 616
           YW
Sbjct: 796 YW 797



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 207/517 (40%), Gaps = 121/517 (23%)

Query: 29  STPASQENPITSVVRKCITLLQVCA----SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIY 84
           +TP S    I +   +  +LLQ+C      S    + VHA  I  G       L + +  
Sbjct: 2   TTPDS----IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLI-- 55

Query: 85  AIVSLSFPMSYAHNIFSHVQDPNIFT---------------------------------W 111
            I S S  ++YA  +F  +  P+I                                   +
Sbjct: 56  DIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFY 115

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV-RMGEQTHSVAI 170
           N MI  Y+ + +   A+EL+  M     +PD +T+  +L A++ +A+  +  +Q H   +
Sbjct: 116 NAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVV 175

Query: 171 RNGFESLVFVQNSLVHMYAAFGH---------VKDACKVFELMSERDL------------ 209
           ++G   +  V N+L+  Y              + +A K+F+ M  RD             
Sbjct: 176 KSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVK 235

Query: 210 -------------------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250
                              VAWN++I+G+A  G   EA  +FR+M    ++ D +T  S+
Sbjct: 236 NNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSV 295

Query: 251 FSACAELGALALGRRAHTYVWKVGLSDNVN----VNNALLDFYSKCGIIIAAQRVFREMR 306
            S CA  G   LG+  H Y  K   +   +    VNNAL+ FY KCG +  AQ +F +M 
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP 355

Query: 307 KRNAVSWS-------------------------------TLVVGLAVNGFGKEALELFKE 335
           +R+ VSW+                                ++ GLA  GF +EAL+ F  
Sbjct: 356 ERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNR 415

Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
           M++ GF P +  F G + +CS  G +  G     ++   YG    +     ++ +  R G
Sbjct: 416 MKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVV-RYGYESSLSAGNALITMYARCG 474

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
           +V  A+    NM    +A+ W  ++ A   HG    A
Sbjct: 475 VVDAAHCLFINMPC-VDAISWNAMIAALGQHGQGTQA 510



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 5/250 (2%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A + F+ + + NI +W  MI G A+      A++ +++M + G +P  + +   + +
Sbjct: 375 MDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS 434

Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
            S L  ++ G Q H+  +R G+ES +   N+L+ MYA  G V  A  +F  M   D ++W
Sbjct: 435 CSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISW 494

Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
           N++I     +G+  +A+ LF EM  EG+ PD  + +++ SAC+  G +  GR+    +  
Sbjct: 495 NAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHN 554

Query: 273 V-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNG---FGK 327
           V G++ +      ++D   + G    A+ V   M  +  A  W  L+ G  ++G    G 
Sbjct: 555 VYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGI 614

Query: 328 EALELFKEME 337
           EA E   E++
Sbjct: 615 EAAERLFELK 624


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/417 (45%), Positives = 269/417 (64%), Gaps = 3/417 (0%)

Query: 200 VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259
           VF  M  RD+V WN++I G+    +  EAL LFR M    VEPD YT  S+ + CA+LGA
Sbjct: 98  VFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGA 157

Query: 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
           L   +  H  + +  +  N  +++AL+D YSKCG I  A+ +F  +++ N   W+ ++ G
Sbjct: 158 LKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISG 217

Query: 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
           LAV+G   +A+++F +ME+   +P  +TF+G+L ACSHCG+V EG  YF  M+  Y + P
Sbjct: 218 LAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQP 277

Query: 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439
            IEH+G MVDLLGRAGL+++A+  I++M M P+ VIWR LLGAC  +    + E A + +
Sbjct: 278 HIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMANI 337

Query: 440 LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMG 499
            +L    SGDYVLLSN+Y  ++RW   Q V   M K+ V K  G S  E    +  F  G
Sbjct: 338 SRLR---SGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHPFKAG 394

Query: 500 DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLV 559
           DRSHP+TE I+ ML  + ++ KL GYVP T+ V  D+ EEEKE  L +HSEK+A+A+ ++
Sbjct: 395 DRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLALAYGIL 454

Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            T  G  VR+ KNLR+C DCH  IK++S++ SR I+VRDR RFH F++G CSC DYW
Sbjct: 455 KTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGDYW 511



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F+ ++  ++ TWNTMI GY   A    A+ L+  M+ S ++PD +T+  ++   +K
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK 154

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           L  ++  +  H + I    E    + ++L+ MY+  G ++ A ++F+ +   ++  WN++
Sbjct: 155 LGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAM 214

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW-KVG 274
           I+G A +G   +A+ +F +M  E V PD  T + + +AC+  G +  GR+    +  +  
Sbjct: 215 ISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYS 274

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLV 317
           +  ++    A++D   + G++  A  + + M  + + V W  L+
Sbjct: 275 VQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALL 318



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+ VF +MR R+ V+W+T++ G       +EAL LF+ M      P + TF  V+  C+ 
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK 154

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G +     +   +  E  I         ++D+  + G ++ A E I + +   N  IW 
Sbjct: 155 LGALKHA-QWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKE-IFDGVQRNNVCIWN 212

Query: 418 TLLGACTIHG 427
            ++    +HG
Sbjct: 213 AMISGLAVHG 222


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 335/603 (55%), Gaps = 37/603 (6%)

Query: 49  LQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           L++C   +  L  K++HA  ++ G+    P L   L+ A    +  +  AH +F  +   
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQP-LPNTLLDAYGKCNL-LQDAHYLFDEMPQR 66

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQT 165
           +  +W +++  Y ++  P   + ++  M  +  ++PD   Y  LLKA + L  +R+G+Q 
Sbjct: 67  DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQV 126

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+  + + F     V++SLV MYA  G    A  VF+ +  +  V+W ++++G+A +G  
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLK 186

Query: 226 NEALTLFR-------------------------------EMASEGVE-PDGYTMVSLFSA 253
           +EA+ LF                                EM  EGV+  D   + S+  A
Sbjct: 187 DEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGA 246

Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
           CA L  L LG++ H  V   G    + ++NAL+D Y+KC  I+AA+ VF  M  R+ VSW
Sbjct: 247 CANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSW 306

Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++++VG A +G  KEAL+L+ +M +    P EVTFVG++YACSH G+V +G   FK M +
Sbjct: 307 TSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIE 366

Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
           +Y I P ++ F C +DLL R+G + +A + I+ M   P+   W  LL AC  HG++ +  
Sbjct: 367 DYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGV 426

Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
                LL L       YVLLSN+YA   +W  +  VR+ M    VK+ PG+S ++LG   
Sbjct: 427 RIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKES 486

Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA 553
             F  G+  HP  +EI  +L E+  +++  GY+P T  V  D+EE+EKE  L +HSE+ A
Sbjct: 487 QVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWA 546

Query: 554 IAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCR 613
           +A+ L+   PGT +R+VKNLR+C DCH  +KL S +  +EI+VRD +R+HHFKDG CSC 
Sbjct: 547 VAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCN 606

Query: 614 DYW 616
           D+W
Sbjct: 607 DFW 609



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 5/231 (2%)

Query: 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204
           +Y   LK  +K       ++ H+  +++G      + N+L+  Y     ++DA  +F+ M
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 205 SERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPDGYTMVSLFSACAELGALALG 263
            +RD V+W S++  +     PN+ L++F  M  ++ ++PD +   +L  ACA L +L LG
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
           ++ H         D+  V ++L+D Y+KCG+   A+ VF  +  + +VSW+ ++ G A +
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS 183

Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           G   EA+ELF    +           G++ +    G   +G   F  M+ E
Sbjct: 184 GLKDEAMELFLRTPVRNLYSWTALISGLVQS----GYCIDGCYMFIEMRRE 230


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 333/554 (60%), Gaps = 38/554 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A   F  + + ++ +WN M+ GYA++      + L+ +M  +GI+PD  T+  ++ A S 
Sbjct: 213 ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS 272

Query: 156 LAD--------------------------VRMGEQTHSV-AIRNGFESLVFVQNS----- 183
             D                          + M  +  S+ A R  F+ L   +NS     
Sbjct: 273 RGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNA 332

Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEP 242
           ++  Y   G++  A ++F  M  R++V WNS+I G+A NG+   A+ LF+EM  ++ + P
Sbjct: 333 MISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 392

Query: 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302
           D  TMVS+ SAC  LGAL LG     ++ +  +  +++ +NA++  YS+CG +  A+RVF
Sbjct: 393 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 452

Query: 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362
           +EM  R+ VS++TL+ G A +G G EA+ L   M+ GG  P  VTF+GVL ACSH G+++
Sbjct: 453 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 512

Query: 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           EG   F+ +KD     P I+H+ CMVDLLGR G ++ A   ++ M M P+A ++ +LL A
Sbjct: 513 EGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNA 567

Query: 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTP 482
             IH    + E+A + L +LEP +SG+++LLSN+YA   RW +V+ +R  M K  VKKT 
Sbjct: 568 SRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTT 627

Query: 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKE 542
           G S VE G ++ +F + DRSH ++++I+ +L E+ KK++  GY+     V  D+EEEEKE
Sbjct: 628 GWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKE 687

Query: 543 DALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRF 602
           + +  HSEK+AI + L+ +  G  +RVVKNLRVC DCH AIK+ISK+  R I+VRD +RF
Sbjct: 688 EIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRF 747

Query: 603 HHFKDGHCSCRDYW 616
           H F DG CSC+DYW
Sbjct: 748 HCFNDGLCSCKDYW 761



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 204/485 (42%), Gaps = 107/485 (22%)

Query: 59  LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
           L+Q+HA  I + +  +N  +   LI     L  P  Y H +F+   +PN+F + +M+R Y
Sbjct: 17  LRQLHAQIIHNSLHHHNYWVA-LLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
           +   +    V ++  M   G++PD   YP L+K+         G   H+  ++ G  S  
Sbjct: 76  SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHAHVLKLGHGSDA 130

Query: 179 FVQNSLVHMYAAFGHVKDACKV---------------------------------FELMS 205
           FV+N+++ MYA  G +  A KV                                 F++M 
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 206 ERDLVAW-------------------------------NSVINGFASNGKPNEALTLFRE 234
           ER+++ W                               N++++G+A NG   E L LF E
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250

Query: 235 MASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294
           M + G+EPD  T V++ SAC+  G   L       + +  +  N  V  ALLD Y+KCG 
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGS 310

Query: 295 IIAAQRVFRE--------------------------------MRKRNAVSWSTLVVGLAV 322
           I AA+R+F E                                M  RN V+W++++ G A 
Sbjct: 311 IGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQ 370

Query: 323 NGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381
           NG    A+ELFKEM       P EVT V V+ AC H G ++ G ++  R   E  I   I
Sbjct: 371 NGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSI 429

Query: 382 EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441
                M+ +  R G ++ A    Q M    + V + TL+     HGH   A    ST+ +
Sbjct: 430 SGHNAMIFMYSRCGSMEDAKRVFQEM-ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 488

Query: 442 --LEP 444
             +EP
Sbjct: 489 GGIEP 493



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
           M  A  +F  +   ++ ++NT+I G+A   + + A+ L S M   GI+PD  T+  +L A
Sbjct: 445 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 504

Query: 153 ISKLADVRMGEQTHSVAIRNGFESL----VFVQNSLVHMYAAFGHVKDACKVFELM 204
            S    +  G        R  FES+    +     +V +    G ++DA +  E M
Sbjct: 505 CSHAGLLEEG--------RKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERM 552


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 303/524 (57%), Gaps = 3/524 (0%)

Query: 93   MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
            +  A ++F+ +   ++ +W  M+   AE+ +      L+ +M + G+ PD  T    L  
Sbjct: 588  LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDT 647

Query: 153  ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
                  + +G+  H+     G E+ + V+N+L++MY+  G  ++A   FE M  RDLV+W
Sbjct: 648  CLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSW 707

Query: 213  NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
            N +   +A  G   EA+ LFR+M  EGV+PD  T  +  +       ++ G+  H    +
Sbjct: 708  NIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAE 767

Query: 273  VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
             GL  +V+V   L+  Y+KCG +  A  +FR       V  + ++  LA +GF +EA+++
Sbjct: 768  SGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKM 827

Query: 333  FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392
            F +M+  G  P   T V ++ AC H GMV+EG S F  MK+ +GI P +EH+ C VDLLG
Sbjct: 828  FWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLG 887

Query: 393  RAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452
            RAG ++ A + I+ M    N ++W +LLG C + G + + E     +L+L+P +S  +V+
Sbjct: 888  RAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVV 947

Query: 453  LSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAM 512
            LSN+Y    +W +    R+ M+ E VK  PG S  E+G +V EF  GDRSHP+T+EI+ +
Sbjct: 948  LSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVV 1007

Query: 513  LAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
            L ++   ++  GY     +   D+E+E KE AL YHSE+IAIAF L+ T P T +++VKN
Sbjct: 1008 LDKLELLMRRAGY---EADKGLDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKN 1064

Query: 573  LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            LRVC DCH A K IS V  REI+VRD  RFHHF +G CSC+D W
Sbjct: 1065 LRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 14/342 (4%)

Query: 93  MSYAHNIFSHVQDPN--IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150
           +S A  +F  +  P+  + TWN M+  YA++     A     +M   G+ PD  ++  +L
Sbjct: 489 ISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVL 548

Query: 151 KAI--SKLADV-RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207
            +   S+ A V RM        + +G+ S   ++ +L+ M+     ++ A  VF  M   
Sbjct: 549 SSCYCSQEAQVLRM------CILESGYRS-ACLETALISMHGRCRELEQARSVFNEMDHG 601

Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267
           D+V+W ++++  A N    E   LFR M  EGV PD +T+ +    C     L LG+  H
Sbjct: 602 DVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIH 661

Query: 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327
             V ++GL  ++ V NALL+ YS CG    A   F  M+ R+ VSW+ +    A  G  K
Sbjct: 662 ACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAK 721

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387
           EA+ LF++M++ G  P ++TF   L       +V +G   F  +  E G+   +     +
Sbjct: 722 EAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDSDVSVATGL 780

Query: 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
           V L  + G + +A    +        V+   ++GA   HG S
Sbjct: 781 VKLYAKCGKLDEAMSLFRGAC-DWTVVLLNAIIGALAQHGFS 821



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 182/387 (47%), Gaps = 18/387 (4%)

Query: 48  LLQVCASSKHKLKQVHAFSIRHGVPL-NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP 106
           LLQ C  S    K  HA  +     L  +  LG  LI   V     +  AH IFS +++ 
Sbjct: 31  LLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCG-SLEEAHAIFSKMEER 89

Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQT 165
           N+ +W  +I   A+      A  L+  M + S   P+++T   +L A +   D+ +G   
Sbjct: 90  NVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSI 149

Query: 166 HSVAIRNGFE----SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           H++    G E    +   V N++++MYA  G ++DA  VF  + E+D+V+W ++   +A 
Sbjct: 150 HAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQ 209

Query: 222 NGK--PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             +  P +AL +FREM  + + P+  T ++   AC    +L  G   H+ + +  L  + 
Sbjct: 210 ERRFYP-DALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFDP 265

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEM 336
             +NAL++ Y KCG    A  VF+ M  R   + VSW+ ++      G   +A+ +F+ +
Sbjct: 266 LASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRL 325

Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSY-FKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
            + G  P  VT + +L A +  G VD G +  F     E G +  +     ++ +  + G
Sbjct: 326 RLEGMRPNSVTLITILNALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCG 384

Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGA 422
               A+   + +    + + W T+LGA
Sbjct: 385 FFSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 174/339 (51%), Gaps = 26/339 (7%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESAN--PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
           +F  + + ++ +W  M   YA+     P  A+ ++ +M +  + P+  T+   L A + L
Sbjct: 188 VFLAIPEKDVVSWTAMAGAYAQERRFYPD-ALRIFREMLLQPLAPNVITFITALGACTSL 246

Query: 157 ADVRMGEQTHSV--AIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVA 211
            D   G   HS+      GF+ L    N+L++MY   G  + A  VF+ M+ R   DLV+
Sbjct: 247 RD---GTWLHSLLHEASLGFDPLA--SNALINMYGKCGDWEGAYSVFKAMASRQELDLVS 301

Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYV 270
           WN++I+     G+  +A+ +FR +  EG+ P+  T++++ +A A  G      R  H  +
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRI 361

Query: 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVN--GFGK 327
           W+ G   +V + NA++  Y+KCG   AA  VFR +R K + +SW+T+ +G + +   FGK
Sbjct: 362 WESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTM-LGASEDRKSFGK 420

Query: 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG---FSYFKRMKDEYGIMPKIEHF 384
             +  F  M + G  P +V+F+ +L ACS+   +D G    S     + +Y +   +   
Sbjct: 421 -VVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY-VESSVATM 478

Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVI-WRTLLGA 422
             +V + G+ G + +A    + M +P  +++ W  +LGA
Sbjct: 479 --LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 158/328 (48%), Gaps = 14/328 (4%)

Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
            D   Y  LL++     D+  G+  H +    G E  +F+ N L++MY   G +++A  +
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAI 82

Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAELGA 259
           F  M ER++V+W ++I+  A  G    A  LFR M  E    P+ YT+V++ +ACA    
Sbjct: 83  FSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRD 142

Query: 260 LALGRRAHTYVWKVGL----SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315
           LA+GR  H  +W++GL    +    V NA+++ Y+KCG +  A  VF  + +++ VSW+ 
Sbjct: 143 LAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTA 202

Query: 316 LVVGLAVN-GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374
           +    A    F  +AL +F+EM +    P  +TF+  L AC+   + D  + +    +  
Sbjct: 203 MAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT--SLRDGTWLHSLLHEAS 260

Query: 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGH--SA 430
            G  P   +   ++++ G+ G  + AY   + M      + V W  ++ A    G    A
Sbjct: 261 LGFDPLASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 431 IAEIARSTLLQLEPKHSGDYVLLSNLYA 458
           +A   R  L  + P       +L+ L A
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAA 346


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 327/574 (56%), Gaps = 9/574 (1%)

Query: 51  VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDPNI 108
           V A    ++++ HA  ++ G+   +P   + L+ A    S+P  M YA  IF+ + +P  
Sbjct: 50  VPARGLDEVRKAHARHVKLGLD-RSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEA 108

Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168
           F +NT++RG+    +P  A+ LY+ M   G++PD +T+PF+LKA ++LA    G Q H  
Sbjct: 109 FDYNTLMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGH 168

Query: 169 AIRNGF-ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING---FASNGK 224
             + GF +    V NSL+  Y   G  + A + FE M   +     S       +   G 
Sbjct: 169 VAKLGFSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTRAGL 228

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
             + L  F  MA  G  P+  +MVS  SACA LGA  +GR  H  + +  ++ N  +  +
Sbjct: 229 WADCLDSFGAMARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVALNTFMETS 288

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+D Y+KCG I  A  VF  M  +N  ++S +V GLA++G G +AL++F  M   G  P 
Sbjct: 289 LVDMYAKCGCIDKASAVFDAMDGKNEWTYSAMVSGLALHGDGLKALQVFDAMAREGHKPD 348

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
           E  +VG+L ACS  G+++EG   F RM+ E+ + P  +H+GCMVDL+ RAG +  A   I
Sbjct: 349 EAVYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGCMVDLMARAGRLDDARALI 408

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
            +M   P    WR+LL AC IHG+  +AE A   L  +   ++GDYV+L++++A  + W 
Sbjct: 409 GSMPTGPTDAAWRSLLNACRIHGNVELAERALQGLSGIGAVNAGDYVILADMHARTKNWD 468

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
               +R       + + PG S VE+  R   F   DRSHP+T EI+ ML ++  +L+ EG
Sbjct: 469 AAAALRTEAANRGLAQAPGFSAVEVHGRAHRFASQDRSHPRTAEIYEMLHQMEWQLRFEG 528

Query: 525 YVPRTENV--FADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
           Y P T  V    D  EEEK  A++ HS+K+A+AF L++T  GTPVRVV NLR+  +CH  
Sbjct: 529 YEPDTSEVALTRDAGEEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRMSKECHAY 588

Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             LIS+++ RE+VVRDR+RFH F+ G CSCR+YW
Sbjct: 589 SALISEIFGREVVVRDRNRFHRFRRGACSCRNYW 622


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 308/545 (56%), Gaps = 33/545 (6%)

Query: 104 QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGE 163
           ++  +  +N MI GY        A+E+  +M  SGI+ D  TYP +++A +    +++G+
Sbjct: 247 ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGK 306

Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223
           Q H+  +R    S  F  NSLV +Y   G   +A  +FE M  +DLV+WN++++G+ S+G
Sbjct: 307 QVHAYVLRREDFSFHF-DNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSG 365

Query: 224 KPNEALTLFREMAS-------------------------------EGVEPDGYTMVSLFS 252
              EA  +F+EM                                 EG EP  Y       
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425

Query: 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312
           +CA LGA   G++ H  + K+G   +++  NAL+  Y+KCG++  AQ+VFR M   ++VS
Sbjct: 426 SCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVS 485

Query: 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372
           W+ L+  L  +G G EA+++++EM   G  P  +TF+ VL ACSH G+VD+G  YF  M+
Sbjct: 486 WNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSME 545

Query: 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432
             Y I P  +H+  ++DLL R+G   +A   I+++   P A IW  LL  C +HG+  + 
Sbjct: 546 TVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELG 605

Query: 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNR 492
            IA   L  L P+H G Y+LLSN+YA   +W  V  VR+ M    VKK    S +E+  +
Sbjct: 606 IIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQ 665

Query: 493 VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEE-EKEDALSYHSEK 551
           V  F + D SHP+ E ++  L ++ K+++  GYVP T  V  D+E +  KED L+ HSEK
Sbjct: 666 VHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEK 725

Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
           IA+AF L+   PGT +R+ KNLR C DCH   + +SKV  R+I++RDR RFHHF++G CS
Sbjct: 726 IAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECS 785

Query: 612 CRDYW 616
           C ++W
Sbjct: 786 CGNFW 790



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 179/391 (45%), Gaps = 73/391 (18%)

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQTHSVA 169
           +N MI G++ + +   A+ L+ KM   G KPD  TY  +L  ++ + D  +   Q H+ A
Sbjct: 116 YNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAA 175

Query: 170 IRNGFESLVFVQNSLVHMYAAFGH----VKDACKVFELMSERD----------------- 208
           +++G   +  V N+LV +Y+        +  A KVF+ + E+D                 
Sbjct: 176 LKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCF 235

Query: 209 ---------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253
                          LVA+N++I+G+ + G   EAL + R M S G+E D +T  S+  A
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 254 CAELGALALGRRAHTYV------------------WKVGLSDNVNVN------------N 283
           CA    L LG++ H YV                  +K G  +                 N
Sbjct: 296 CANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWN 355

Query: 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343
           ALL  Y   G I  A+ +F+EM+++N +SW  ++ GLA NGFG+E L+LF  M+  GF P
Sbjct: 356 ALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEP 415

Query: 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403
            +  F G + +C+  G    G  +  ++  + G    +     ++ +  + G+V++A + 
Sbjct: 416 CDYAFSGAIKSCAVLGAYCNGQQFHAQLV-KIGFDSSLSAGNALITMYAKCGVVEEAQQV 474

Query: 404 IQNMLMPP--NAVIWRTLLGACTIHGHSAIA 432
            + M   P  ++V W  L+ A   HGH   A
Sbjct: 475 FRTM---PCLDSVSWNALIAALGQHGHGVEA 502



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           IF  +++ NI +W  MI G AE+      ++L+S M   G +P  + +   +K+ + L  
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
              G+Q H+  ++ GF+S +   N+L+ MYA  G V++A +VF  M   D V+WN++I  
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-GLSD 277
              +G   EA+ ++ EM  +G+ PD  T +++ +AC+  G +  GR+    +  V  +  
Sbjct: 493 LGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPP 552

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
             +    L+D   + G    A+ +   +  K  A  W  L+ G  V+  G   L +    
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVH--GNMELGIIAAD 610

Query: 337 EIGGFVP---GEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
           ++ G +P   G    +  +YA +  G  +E     K M+D
Sbjct: 611 KLFGLIPEHDGTYMLLSNMYAAT--GQWEEVARVRKLMRD 648



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 32/262 (12%)

Query: 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
           LA  ++  +   G +P  H    L+    K +++    Q          E     + ++V
Sbjct: 32  LARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEIS----EPDKIARTTMV 87

Query: 186 HMYAAFGHVKDACKVFEL--MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
             Y A G +  A  VFE   +S RD V +N++I GF+ N     A+ LF +M  EG +PD
Sbjct: 88  SGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 244 GYTMVSLFSA----------CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293
            +T  S+ +           C +  A AL         K G     +V+NAL+  YS+C 
Sbjct: 148 DFTYASVLAGLALVVDDEKQCVQFHAAAL---------KSGAGYVTSVSNALVSVYSRCA 198

Query: 294 ----IIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV 349
               ++ +A++VF ++ +++  SW+T++ G   NG      EL K M+    +   V + 
Sbjct: 199 SSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKL---VAYN 255

Query: 350 GVLYACSHCGMVDEGFSYFKRM 371
            ++    +CG+  E     +RM
Sbjct: 256 AMISGYVNCGLYQEALEMVRRM 277



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 33/127 (25%)

Query: 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK--------------------------- 291
           +L L R  H  +   G   + ++ N L+D Y K                           
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 292 ----CGIIIAAQRVFRE--MRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
                G I  A+ VF E  +  R+ V ++ ++ G + N  G  A+ LF +M+  GF P +
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 346 VTFVGVL 352
            T+  VL
Sbjct: 149 FTYASVL 155


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/627 (36%), Positives = 351/627 (55%), Gaps = 34/627 (5%)

Query: 2   TSWLMHSKQPSYEEISDLPCRVKSLYHSTPASQENP----ITSVVRKCITLLQVCASSKH 57
           TSW +  ++ +Y+    L     SLY S   S  +P       +++ C +L     S   
Sbjct: 16  TSWNVRLRELAYQ---SLFTESISLYRSMLRSGSSPDAFSFPFILKSCASL-----SLPV 67

Query: 58  KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSY---AHNIFSHVQDPNI----FT 110
             +Q+H   IR G      +   +++ A++S+         A  +F   ++P+       
Sbjct: 68  SGQQLHCHVIRGGC-----EAEPFVLTALISMYCKCGLVEDARKVFE--ENPHSSQLGVC 120

Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
           +N +I GY  ++    A  ++ +M  +G+  D+ T   L+   +    + +G   H   +
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230
           + G  S V V NS + MY   G V+   ++F+ M  + L+ WN+VI+G++ NG   + L 
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 240

Query: 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS 290
           LF +M S GV PD +T+VS+ S+CA LGA  +G+     V   G + NV ++NAL+  Y+
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300

Query: 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350
           +CG +  A+ VF  M  ++ VSW+ ++    ++G G+  L LF +M   G  P    FV 
Sbjct: 301 RCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVM 360

Query: 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP 410
           VL ACSH G+ D+G   F+ MK EY + P  EH+ C+VDLLGRAG + +A E+I +M + 
Sbjct: 361 VLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVE 420

Query: 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470
           P+  +W  LLGAC IH +  +AE+A + +++ EP + G YVL+SN+Y+  +    +  +R
Sbjct: 421 PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIR 480

Query: 471 RTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI-TKKLKLEGYVPRT 529
             M +   +K PG+S VE   +V  F  GDRSH QTEE+H ML E+ T  ++L G     
Sbjct: 481 VMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAG----- 535

Query: 530 ENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKV 589
            N+  D   EE       HSE++AIAF ++N+ PGT + V+KNLRVC DCH+ IKL+SK+
Sbjct: 536 -NMDCD-RGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKI 593

Query: 590 YSREIVVRDRSRFHHFKDGHCSCRDYW 616
             R  VVRD SRFH+FKDG CSC+DYW
Sbjct: 594 VDRRFVVRDASRFHYFKDGVCSCKDYW 620


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 331/571 (57%), Gaps = 4/571 (0%)

Query: 48  LLQVCASSKHKL--KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD 105
           +L++CA  K  L  K  HA  +  G  L    L   ++  + S    + +A  +F  +  
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMG--LKTDLLTSNILINMYSKCGSVDFARQVFDEMPS 127

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
            ++ +WNTMI    ++     A++L  +M   G      T   +L A +    +   +  
Sbjct: 128 RSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLL 187

Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
           H+ AI+   +  VFV  +L+ +YA  G +KDA  VFE M +R +V W+S+  G+  N   
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
            +AL LFR+    G++ D + M S+  ACA L A+  G++ +  + K G   N+ V ++L
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSL 307

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345
           +D Y+KCG I  + +VFR++ KRN V W+ ++ GL+ +    E + LF++M+  G  P +
Sbjct: 308 IDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPND 367

Query: 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405
           VTFV VL AC H G+V +G  YF  M  E+ + P + H+ CMVD L RAG + +AY+ I 
Sbjct: 368 VTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465
            +    +A +W +LL +C  HG+  +AE+A   L  +EP +SG+Y+LLSN+YA   +W  
Sbjct: 428 KLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDE 487

Query: 466 VQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525
           V ++R+ + +  VKK  G S +E+ ++V  F +G+R+HP+  EI++ L E+  +L+  GY
Sbjct: 488 VAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGY 547

Query: 526 VPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKL 585
              T++    + E  K++ L +HSEK+A    L+   P  P+R++KNLR+C DCH  +KL
Sbjct: 548 KVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKL 607

Query: 586 ISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
            SK + R+++VRD +RFHHFK+G CSC D+W
Sbjct: 608 ASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 312/512 (60%), Gaps = 1/512 (0%)

Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFLLKAISKLADVRMGEQ 164
           P    +N  I   + +     A+ L+ +M  + G+  D +T+P +L + + L      + 
Sbjct: 4   PPGVAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADA 63

Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
            H++ +R G  + + V N+LV  YA       A  +F+ M  RD+V W S++ G A +G 
Sbjct: 64  LHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGS 123

Query: 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
            + AL ++R+M + GVEPD Y + +  S+CA    L LG+  H    ++GL   ++V N+
Sbjct: 124 HDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNS 183

Query: 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344
           L+  Y+K G +  A++VF   R R  V+W+ L+VG A NG G+E+L+++ EM   G  P 
Sbjct: 184 LVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPD 243

Query: 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404
            VTF+G+L+ACSH G+VD G ++FK M+ ++GI P  +H+ CMVD+LGRAG + +A E +
Sbjct: 244 YVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELL 303

Query: 405 QNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464
               M  +A +W+ LLGAC  H ++ +AE A   + +L+P  +  Y++LSNLY+ E+RW 
Sbjct: 304 DQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWS 363

Query: 465 NVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEG 524
           +V  +R  M    + K PG S V        F++ DR HP+T+EI+  + E+ +K++ EG
Sbjct: 364 DVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEG 423

Query: 525 YVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIK 584
           +V  T+    D   E +E  L++HSE++A+AF L+    G PVRV KNLRVC DCH+AIK
Sbjct: 424 FVADTDWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIK 483

Query: 585 LISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           +++KVY REI++RD + FHH +DG CSC DYW
Sbjct: 484 MVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A  +F  +   ++ TW +++ G A S +   A+ +Y  M  SG++PD +     L + + 
Sbjct: 96  ARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAG 155

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
              + +G+  H+ A+R G E  + V NSLV MYA  G +++A KVF+    R  V W ++
Sbjct: 156 STTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTAL 215

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV-- 273
           I G+A NG+  E+L ++ EM   G  PD  T + L  AC+  G +  G RAH    +   
Sbjct: 216 IVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAG-RAHFKSMQADH 274

Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVF-REMRKRNAVSWSTLV 317
           G++   +    ++D   + G +  A  +  +   K +A  W  L+
Sbjct: 275 GITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALL 319


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 306/552 (55%), Gaps = 35/552 (6%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A ++F  V       WN MI GY +S     A EL+ +M    +  D  T+  +L A + 
Sbjct: 251 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 310

Query: 156 LADVRMGEQTHSVAIR--NGF--ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
                 G+  H   IR    F  E+ + V N+LV +Y+  G +  A ++F+ M+ +D+V+
Sbjct: 311 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 370

Query: 212 WNSVINGFASNG-------------------------------KPNEALTLFREMASEGV 240
           WN++++G+  +G                                  +AL LF +M +E V
Sbjct: 371 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 430

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
           +P  YT     +AC ELGAL  GR+ H ++ + G   + +  NALL  Y+KCG +  A+ 
Sbjct: 431 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 490

Query: 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360
           VF  M   ++VSW+ ++  L  +G G+EALELF +M   G  P  ++F+ +L AC+H G+
Sbjct: 491 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGL 550

Query: 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420
           VDEGF YF+ MK ++GI P  +H+  ++DLLGR+G + +A + I+ M   P   IW  +L
Sbjct: 551 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAIL 610

Query: 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
             C  +G       A   L ++ P+H G Y+LLSN Y+   RW++   VR+ M    VKK
Sbjct: 611 SGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 670

Query: 481 TPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE 540
            PG S +E+G+++  F +GD  HP+ +E++  L  I  +++  GYVP T+ V  D+E  E
Sbjct: 671 EPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHE 730

Query: 541 KEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRS 600
           KE  L  HSEK+A+ F L+   PG  V V+KNLR+C DCH A+  +SK   REIVVRD  
Sbjct: 731 KEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVR 790

Query: 601 RFHHFKDGHCSC 612
           RFHHFKDG CSC
Sbjct: 791 RFHHFKDGECSC 802



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 165/393 (41%), Gaps = 80/393 (20%)

Query: 112 NTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGE--QTHSV 168
           N M+  +A ++    AV ++  +  SG ++PD +++  L+ A+ ++ ++      Q H  
Sbjct: 129 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 188

Query: 169 AIRNGFESLVFVQNSLVHMYAAF----------------------------------GHV 194
            +++G  +++ V N+L+ +Y                                     G V
Sbjct: 189 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 248

Query: 195 KDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254
             A  VFE +  +  V WN++I+G+  +G   +A  LFR M SE V  D +T  S+ SAC
Sbjct: 249 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 308

Query: 255 AELGALALGRRAHTYVWKVGLSDN------VNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
           A  G    G+  H  + +  L  N      + VNNAL+  YSK G I+ A+R+F  M  +
Sbjct: 309 ANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 366

Query: 309 NAVSWST-------------------------------LVVGLAVNGFGKEALELFKEME 337
           + VSW+T                               +V G    G  ++AL+LF +M 
Sbjct: 367 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMR 426

Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
                P + T+ G + AC   G +  G      +  + G          ++ +  + G V
Sbjct: 427 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAV 485

Query: 398 KQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHS 429
             A   +  ++MP  ++V W  ++ A   HGH 
Sbjct: 486 NDA--RLVFLVMPNLDSVSWNAMISALGQHGHG 516



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 12/201 (5%)

Query: 182 NSLVHMYAAFGHVKDACKVFELM--SERDLVAWNSVINGFASNGKPNEALTLFREMASEG 239
            SLV   AA G ++DA   F+ +  + RD V  N++++ FA       A+++F  +   G
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 240 -VEPDGYTMVSLFSACAELGALALGR--RAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
            + PD Y+  +L SA  ++  LA     + H  V K G +  ++V+NAL+  Y KC    
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 297 A---AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353
           A   A++V  EM  ++ ++W+T+VVG    G    A  +F+E++ G F   +V +  ++ 
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVD-GKF---DVVWNAMIS 271

Query: 354 ACSHCGMVDEGFSYFKRMKDE 374
                GM  + F  F+RM  E
Sbjct: 272 GYVQSGMCADAFELFRRMVSE 292


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 326/563 (57%), Gaps = 8/563 (1%)

Query: 60  KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYA 119
           +Q+H   ++ G  + N  +G  +I  + S    ++ A  +F  +   N+ +WN MI GY 
Sbjct: 93  RQIHDICVKTGFDMVNV-VGNSII-DMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYT 150

Query: 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV- 178
            +     A+ L+ KM   G   D  T+   LKA S L  ++ G Q H+  I  GF   V 
Sbjct: 151 VAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVN 210

Query: 179 -FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
             V  +L+ +Y   G +  A +VF  + E+ +++W ++I G+A  G   E++ LFR++  
Sbjct: 211 TAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRE 270

Query: 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297
             ++ DG+ + S+    A+   +  G++ H +  KV    +++V N++LD Y KCG+I  
Sbjct: 271 SSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINE 330

Query: 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           A+R+F EM  RN +SW+ ++ G   +G GKEA+ LF EM++    P +VT++ VL  CSH
Sbjct: 331 AERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSH 390

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417
            G+V++G  YF R+   +GI  ++EH+ CMVDLLGRAG +K+A   + +M +  N  IW+
Sbjct: 391 SGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQ 450

Query: 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477
           TLL AC +HG   + +     LL+L+ ++  +YV++SN+YA    W   + +R  +  ++
Sbjct: 451 TLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKK 510

Query: 478 VKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLE-GYVPRTENVFADI 536
           +KK  G S VE+   V  F+ GD +HP TE+IH +L E+ +++K E GYV   +    D+
Sbjct: 511 LKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDV 570

Query: 537 EEEEKEDALSYHSEKIAIAFMLV--NTAPGTPV-RVVKNLRVCADCHLAIKLISKVYSRE 593
           EEE K D L  HSEK+AI   LV      G  V RV KNLRVC DCH  IK +SK+    
Sbjct: 571 EEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVV 630

Query: 594 IVVRDRSRFHHFKDGHCSCRDYW 616
            VVRD +RFH F+DG CSCRDYW
Sbjct: 631 FVVRDANRFHRFEDGLCSCRDYW 653



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 4/194 (2%)

Query: 173 GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232
           GF   + + N L+ MY   G +  AC VF+ M +R++V+W +++ G   NG P E+L LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV-NNALLDFYSK 291
            +M   GV+P+ +T  +   AC  L  L +GR+ H    K G  D VNV  N+++D YSK
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGF-DMVNVVGNSIIDMYSK 120

Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM-EIGGFVPGEVTFVG 350
           CG I  A  +F  M  RN +SW+ ++ G  V GF ++AL LF++M E+GGF+  E TF  
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLD-EFTFTS 179

Query: 351 VLYACSHCGMVDEG 364
            L ACS  G + EG
Sbjct: 180 TLKACSDLGAIKEG 193



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
           +G   ++ ++N L+  Y KCG +  A  VF  M KRN VSW+ L+ G   NG   E+L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR-MKDEYGIMPKIEHFGCMVDLL 391
           F +M + G  P + TF   L AC     +D G       +K  + ++  + +   ++D+ 
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGN--SIIDMY 118

Query: 392 GRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACTIHG 427
            + G + +A    +  +MP  N + W  ++   T+ G
Sbjct: 119 SKCGRINEAACMFE--VMPVRNLISWNAMIAGYTVAG 153


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 316/576 (54%), Gaps = 12/576 (2%)

Query: 47  TLLQVCASSKHKL--KQVHAFSIRH----GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100
           ++L V A   H L   QVHA  +R      V +NN  L  Y      S    +     +F
Sbjct: 241 SILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY------SKCDCLDDMRRLF 294

Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
             + + +  ++N +I  YA +      + L+ +M   G       Y  +L     L DV 
Sbjct: 295 DEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVH 354

Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
           +G+Q H+  +  G  S   + N+L+ MY+  G +  A   F   SE+  ++W ++I G+ 
Sbjct: 355 IGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYV 414

Query: 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280
            NG+  EAL LF +M   G+ PD  T  S+  A + L  + LGR+ H+Y+ + G   +V 
Sbjct: 415 QNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVF 474

Query: 281 VNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
             + L+D Y+KCG +  A R F EM +RN++SW+ ++   A  G  K A+++F+ M   G
Sbjct: 475 SGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG 534

Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
           F P  VTF+ VL ACSH G+ DE   YF  MK +Y I P  EH+ C++D LGR G   Q 
Sbjct: 535 FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 594

Query: 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460
            + +  M    + +IW ++L +C IHG+  +A +A   L  +EP  +  YV+LSN+YA  
Sbjct: 595 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARA 654

Query: 461 QRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKL 520
            +W +   V++ M    V+K  G+S VE+  +++ F   D + P  +EI   L  + K++
Sbjct: 655 GQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEM 714

Query: 521 KLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
             +GY P        ++ E K ++L YHSE++AIAF L+NT  GTP+R++KNL  C DCH
Sbjct: 715 DKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCH 774

Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
             IK+ISK+ +R+I+VRD  RFHHFKDG CSC DYW
Sbjct: 775 AVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 187/377 (49%), Gaps = 22/377 (5%)

Query: 62  VHAFSIRHGVPLN----NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
           +H F+I+ G+  +    N  L  Y  + +      ++ A  +F  + D +  T+N M+ G
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGL------LAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 118 YAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176
            ++      A++L++ M  +GI P TH T+  +L   + +A + +G Q H++ +R+    
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGI-PATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL 269

Query: 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236
            VFV NSL+  Y+    + D  ++F+ M ERD V++N +I  +A N      L LFREM 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296
             G +       ++ S    L  + +G++ H  +  +GL+    + NAL+D YSKCG++ 
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389

Query: 297 AAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356
           AA+  F    +++A+SW+ L+ G   NG  +EAL+LF +M   G  P   TF  ++ A S
Sbjct: 390 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 449

Query: 357 HCGMVDEG---FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-N 412
              M+  G    SY  R     G    +     +VD+  + G + +A        MP  N
Sbjct: 450 SLAMIGLGRQLHSYLIR----SGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE--MPERN 503

Query: 413 AVIWRTLLGACTIHGHS 429
           ++ W  ++ A   +G +
Sbjct: 504 SISWNAVISAYAHYGEA 520



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 82  LIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
           LI +  S S  +  A ++F      N  TW  M+R +A +     A+ L+  M   G+ P
Sbjct: 79  LILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIP 138

Query: 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201
           D  T   +L               H  AI+ G ++ VFV N+L+  Y   G +  A +VF
Sbjct: 139 DRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF 193

Query: 202 ELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261
             M ++D V +N+++ G +  G   +AL LF  M   G+    +T  S+ +  A +  L 
Sbjct: 194 LEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLL 253

Query: 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321
           LG + H  V +     NV VNN+LLDFYSKC  +   +R+F EM +R+ VS++ ++   A
Sbjct: 254 LGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313

Query: 322 VNGFGKEALELFKEMEIGGF 341
            N      L LF+EM+  GF
Sbjct: 314 WNQCAATVLRLFREMQKLGF 333



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237
           +F  N ++  Y++ G +  A  +F     R+   W  ++   A+ G+ ++AL+LFR M  
Sbjct: 74  IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG 133

Query: 238 EGVEPDGYTMVSLFS--ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII 295
           EGV PD  T+ ++ +   C            H +  K GL  +V V N LLD Y K G++
Sbjct: 134 EGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352
            AA+RVF EM  ++AV+++ +++G +  G   +AL+LF  M   G      TF  +L
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSIL 243



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%)

Query: 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337
           N+   N +L  YS  G + AAQ +F     RNA +W+ ++   A  G   +AL LF+ M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 338 IGGFVPGEVTFVGVL 352
             G +P  VT   VL
Sbjct: 133 GEGVIPDRVTVTTVL 147


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/637 (33%), Positives = 362/637 (56%), Gaps = 48/637 (7%)

Query: 19  LPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKL--KQVHAFSIRHGVPLNNP 76
            P +   +Y +  +    P   V+   +++ + CA+S   +  K++H  +I+ G    N 
Sbjct: 57  FPKKAIDIYSTLLSRNVRPDKFVL---LSVAKACAASGDLVVAKKIHDDAIQFGF---NK 110

Query: 77  DL--GKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM 134
           DL  G  LI       F ++ A  +F  +   ++ +W +M   Y         + L+ +M
Sbjct: 111 DLVLGNALIDMFGKCKF-VNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREM 169

Query: 135 HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHV 194
            ++GI+ ++ T   +L A +    +++G + H   +RN  E  V+V ++LV+MYA+   +
Sbjct: 170 GLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGL 227

Query: 195 KDACKVFELMSERDLVAWN-----------------------------------SVINGF 219
           K A  VF+ M  RD+V+WN                                   + I+G 
Sbjct: 228 KQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGC 287

Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
             NG+   AL +  +M   G++P+  T+VS    C  L +L  G+  H YV++    ++V
Sbjct: 288 MQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDV 347

Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
            +  AL+  Y+KCG +  ++ VF  M +++ V+W+T+++  +++G G E+L LF +M   
Sbjct: 348 TITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDS 407

Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
           G  P  VTF+GVL  CSH  + DEG   F  M  E+ I P  +H+ CMVD+L RAG +++
Sbjct: 408 GVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEE 467

Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
           AY++I+ M + P A  W  LLGAC ++ +  +  +A S L ++EP ++G+YVLLSN+   
Sbjct: 468 AYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVT 527

Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
            ++W+   E+R+ M  + + KTPG S V++ N+V+ F  GD+S+ Q + I+  L EI +K
Sbjct: 528 AKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEK 587

Query: 520 LKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADC 579
           ++L+GY P T+ V  ++++E++E+ L  HSE++A+AF ++N++  T VRV KNLR+C DC
Sbjct: 588 MRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDC 647

Query: 580 HLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           H AIKLI+K+   +I+VRD  RFHHF+DG+C+C D+W
Sbjct: 648 HNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 141/281 (50%), Gaps = 3/281 (1%)

Query: 99  IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158
           +F  + +P++ TW  +I G+ +   P  A+++YS +    ++PD      + KA +   D
Sbjct: 33  LFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGD 92

Query: 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVING 218
           + + ++ H  AI+ GF   + + N+L+ M+     V  A  VF+ M  +D+V+W S+   
Sbjct: 93  LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYC 152

Query: 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278
           + + G   + + LFREM   G+  +  T+ S+  ACA+   + LGR  H ++ +  +  N
Sbjct: 153 YVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGN 210

Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
           V V++AL++ Y+    +  A+ VF  M  R+ VSW+ ++    +N   +  L LF +M  
Sbjct: 211 VYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRK 270

Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379
            G    + ++   +  C   G  +       +M+D  GI P
Sbjct: 271 EGIKLNQASWNAAISGCMQNGQHELALGILCKMQDS-GIKP 310



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 16/237 (6%)

Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
           G +K A  +F+ + E DL  W  +I+G   +G P +A+ ++  + S  V PD + ++S+ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
            ACA  G L + ++ H    + G + ++ + NAL+D + KC  +  A+ VF +M  ++ V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
           SW+++       G  ++ + LF+EM + G     +T   +L AC+          Y K  
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA---------DYIKLG 195

Query: 372 KDEYGIMPKIEHFG------CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGA 422
           ++ +G + + E  G       +V++   +  +KQA     +M    + V W  +L A
Sbjct: 196 REVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMY-HRDIVSWNVMLTA 251


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 311/515 (60%), Gaps = 2/515 (0%)

Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
           HV D  IF++N+++    ES     AVE+  +M    +  D  TY  ++   +++ D+++
Sbjct: 182 HVND--IFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQL 239

Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221
           G + H+  +R G     FV + L+ MY   G V +A  VF+ +  R++V W +++  +  
Sbjct: 240 GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV 281
           NG   E+L LF  M  EG  P+ YT   L +ACA + AL  G   H  V K+G  ++V V
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIV 359

Query: 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
            NAL++ YSK G I ++  VF +M  R+ ++W+ ++ G + +G GK+AL++F++M     
Sbjct: 360 RNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEE 419

Query: 342 VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
            P  VTF+GVL A SH G+V EGF Y   +   + I P +EH+ CMV LL RAGL+ +A 
Sbjct: 420 CPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAE 479

Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
            +++   +  + V WRTLL AC +H +  +      ++LQ++P   G Y LLSN+YA  +
Sbjct: 480 NFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKAR 539

Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
           RW  V  +R+ M +  +KK PG S +++ N +  F     +HP++ +I+  + ++   +K
Sbjct: 540 RWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIK 599

Query: 522 LEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHL 581
             GYVP   +V  D+E+E+KE  LSYHSEK+A+A+ L+      P+R++KNLR+C DCH 
Sbjct: 600 PLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHT 659

Query: 582 AIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
           A+KLISKV +R I+VRD +RFHHF+DG C+C D+W
Sbjct: 660 AVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 169/339 (49%), Gaps = 6/339 (1%)

Query: 93  MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKM-HVSGIKPDTHTYPFLLK 151
           +  A N+F  +   N+ +WN ++ GY    N L  + L+  M  +    P+ + +   L 
Sbjct: 66  LGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALS 125

Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---D 208
           A S    V+ G Q H +  + G     +V+++LVHMY+   HV+ A +V + +      D
Sbjct: 126 ACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVND 185

Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
           + ++NSV+N    +G+  EA+ + R M  E V  D  T V +   CA++  L LG R H 
Sbjct: 186 IFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHA 245

Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
            + + GL  +  V + L+D Y KCG ++ A+ VF  ++ RN V W+ L+     NG+ +E
Sbjct: 246 RLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEE 305

Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
           +L LF  M+  G +P E TF  +L AC+    +  G     R+ ++ G    +     ++
Sbjct: 306 SLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARV-EKLGFKNHVIVRNALI 364

Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHG 427
           ++  ++G +  +Y    +M+   + + W  ++   + HG
Sbjct: 365 NMYSKSGSIDSSYNVFTDMIY-RDIITWNAMICGYSHHG 402



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 96  AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
           A N+F  +Q+ N+  W  ++  Y ++     ++ L++ M   G  P+ +T+  LL A + 
Sbjct: 275 ARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAG 334

Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
           +A +R G+  H+   + GF++ V V+N+L++MY+  G +  +  VF  M  RD++ WN++
Sbjct: 335 IAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAM 394

Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VG 274
           I G++ +G   +AL +F++M S    P+  T + + SA + LG +  G     ++ +   
Sbjct: 395 ICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFK 454

Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLV 317
           +   +     ++   S+ G++  A+   +  + K + V+W TL+
Sbjct: 455 IEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLL 498



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 14/255 (5%)

Query: 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS-EGV 240
           NSLVH+Y   G +  A  +F+ M  R++V+WN ++ G+   G   E L LF+ M S +  
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 241 EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300
            P+ Y   +  SAC+  G +  G + H  ++K GL  +  V +AL+  YS+C  +  A +
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 301 VFREM---RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
           V   +      +  S+++++  L  +G G+EA+E+ + M         VT+VGV+  C+ 
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-VDLLGRAGLV---KQAYEYIQNMLMPPNA 413
              +  G     R+    G+M   E  G M +D+ G+ G V   +  ++ +QN     N 
Sbjct: 234 IRDLQLGLRVHARLL-RGGLMFD-EFVGSMLIDMYGKCGEVLNARNVFDGLQN----RNV 287

Query: 414 VIWRTLLGACTIHGH 428
           V+W  L+ A   +G+
Sbjct: 288 VVWTALMTAYLQNGY 302


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,642,520,512
Number of Sequences: 23463169
Number of extensions: 392439628
Number of successful extensions: 1031629
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9677
Number of HSP's successfully gapped in prelim test: 2253
Number of HSP's that attempted gapping in prelim test: 878229
Number of HSP's gapped (non-prelim): 53549
length of query: 616
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 467
effective length of database: 8,863,183,186
effective search space: 4139106547862
effective search space used: 4139106547862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)