BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007134
         (616 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTL-------VVGLA-------VNGFGKEALE 331
           LD  SK G ++ A R++ E R RN V  S         V  LA        N       +
Sbjct: 33  LDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +FK+M +   VP E TF             +  F   K+MK  +GI P++  +G  +   
Sbjct: 92  IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGF 150

Query: 392 GRAGLVKQAYEYIQNM 407
            R G   +AYE   +M
Sbjct: 151 CRKGDADKAYEVDAHM 166


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 38.9 bits (89), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

Query: 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTL-------VVGLA-------VNGFGKEALE 331
           LD  SK G ++ A R++ E R RN V  S         V  LA        N       +
Sbjct: 33  LDXCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91

Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
           +FK+  +   VP E TF             +  F   K+ K  +GI P++  +G  +   
Sbjct: 92  IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXK-AFGIQPRLRSYGPALFGF 150

Query: 392 GRAGLVKQAYE 402
            R G   +AYE
Sbjct: 151 CRKGDADKAYE 161


>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
           Mycobacterium Tuberculosis
          Length = 330

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 76  PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135
           P++ +    AI +L +  S    IF H    N  TW+T+I G  E   P LAV+L    H
Sbjct: 62  PEVERVQAGAISALRWGGSAPRVIFLHGGGQNAHTWDTVIVGLGE---PALAVDLPGHGH 118

Query: 136 VSGIKPDTHTYPFL 149
            S  + D +  P L
Sbjct: 119 -SAWREDGNYSPQL 131


>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
          Length = 529

 Score = 29.3 bits (64), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 31/191 (16%)

Query: 425 IHGHSAIAEIA----RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480
           +HGHS IA +A    R+    ++P  +G  V  + L  +  R L + E     +   V+ 
Sbjct: 143 LHGHSGIARLALFYARAACGLVDPS-AGTGVANAGLVYFNGRLLAMSE---DDLPYHVRV 198

Query: 481 TPGHSLVELGNRVFEFFMG------DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFA 534
                L  +G   F+  +G       +  P T E+HA+  ++ K+  L+ +  R +   +
Sbjct: 199 ADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKS 258

Query: 535 DIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREI 594
           D  E   E     H                    + +NL V  D  +  KL   +     
Sbjct: 259 DDVEIPLEQPTMIHD-----------------FAITENLVVVPDHQVVFKLQEMLRGGSP 301

Query: 595 VVRDRSRFHHF 605
           VV D ++   F
Sbjct: 302 VVLDAAKTSRF 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,149,542
Number of Sequences: 62578
Number of extensions: 714376
Number of successful extensions: 1722
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 9
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)