Query 007134
Match_columns 616
No_of_seqs 743 out of 4399
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 19:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-117 3E-122 982.5 67.4 593 20-616 103-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-112 3E-117 965.2 66.1 586 21-614 270-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.8E-72 1E-76 633.9 39.7 577 22-610 69-678 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.6E-60 7.8E-65 527.5 53.4 449 23-483 425-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 8.5E-60 1.8E-64 524.5 53.3 521 43-593 371-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-58 4.5E-63 510.6 39.8 487 105-610 84-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-25 1.1E-29 254.0 50.6 412 54-477 445-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-24 3.2E-29 250.1 50.5 443 20-476 379-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3E-29 6.6E-34 206.0 8.1 106 483-606 2-116 (116)
10 KOG4626 O-linked N-acetylgluco 99.9 1.4E-19 3E-24 179.8 30.4 374 79-464 119-507 (966)
11 PRK11447 cellulose synthase su 99.9 6.3E-18 1.4E-22 197.1 47.1 407 54-475 283-739 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.5E-19 3.2E-24 179.7 26.4 358 107-476 115-485 (966)
13 PRK11447 cellulose synthase su 99.9 2.4E-17 5.2E-22 192.3 48.1 440 21-473 129-663 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.9 7.6E-18 1.6E-22 184.5 39.8 385 82-476 133-571 (615)
15 PRK11788 tetratricopeptide rep 99.8 7.7E-19 1.7E-23 182.4 29.5 298 153-484 45-355 (389)
16 PRK11788 tetratricopeptide rep 99.8 5.6E-18 1.2E-22 175.9 32.9 294 113-441 40-346 (389)
17 PRK10049 pgaA outer membrane p 99.8 2.5E-16 5.3E-21 175.8 41.5 385 83-475 22-455 (765)
18 PRK15174 Vi polysaccharide exp 99.8 2E-16 4.4E-21 172.9 39.4 326 113-447 47-386 (656)
19 PRK09782 bacteriophage N4 rece 99.8 2.6E-15 5.5E-20 168.0 46.3 213 258-477 490-707 (987)
20 PRK10049 pgaA outer membrane p 99.8 4.1E-15 8.9E-20 166.1 47.9 386 54-449 29-463 (765)
21 PRK15174 Vi polysaccharide exp 99.8 5E-16 1.1E-20 169.8 38.2 327 144-477 43-382 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-15 3.4E-20 166.3 42.2 397 54-474 141-595 (615)
23 PRK14574 hmsH outer membrane p 99.8 5.6E-14 1.2E-18 154.2 46.7 424 45-476 39-513 (822)
24 PRK09782 bacteriophage N4 rece 99.8 1.1E-13 2.3E-18 155.1 47.7 263 208-479 476-743 (987)
25 PRK14574 hmsH outer membrane p 99.7 4.8E-13 1E-17 146.9 41.4 383 85-475 43-478 (822)
26 KOG2002 TPR-containing nuclear 99.6 6.1E-12 1.3E-16 132.7 37.3 411 56-475 252-744 (1018)
27 KOG2002 TPR-containing nuclear 99.6 7.3E-12 1.6E-16 132.1 37.0 367 106-478 268-677 (1018)
28 KOG4422 Uncharacterized conser 99.6 8.7E-12 1.9E-16 119.9 32.0 333 106-442 205-590 (625)
29 KOG2076 RNA polymerase III tra 99.5 1.7E-11 3.8E-16 128.5 32.4 317 154-474 150-510 (895)
30 PF13429 TPR_15: Tetratricopep 99.5 2E-14 4.3E-19 141.7 9.0 254 216-474 15-275 (280)
31 KOG4422 Uncharacterized conser 99.5 1.5E-10 3.3E-15 111.5 31.6 380 74-477 114-552 (625)
32 KOG2003 TPR repeat-containing 99.5 1.3E-11 2.8E-16 119.3 24.4 346 111-462 279-709 (840)
33 PRK10747 putative protoheme IX 99.5 6.1E-11 1.3E-15 122.4 30.1 286 121-443 97-391 (398)
34 KOG0547 Translocase of outer m 99.5 8.5E-11 1.8E-15 115.2 28.3 212 257-474 339-564 (606)
35 KOG1126 DNA-binding cell divis 99.5 7.9E-12 1.7E-16 127.2 21.9 243 224-475 334-585 (638)
36 PRK10747 putative protoheme IX 99.5 6.9E-11 1.5E-15 122.0 29.7 275 191-475 97-389 (398)
37 TIGR00540 hemY_coli hemY prote 99.4 4.3E-10 9.3E-15 116.8 33.5 288 120-440 96-397 (409)
38 KOG1155 Anaphase-promoting com 99.4 9.2E-10 2E-14 107.4 32.7 282 151-441 235-535 (559)
39 KOG1126 DNA-binding cell divis 99.4 2.6E-11 5.5E-16 123.5 23.0 275 194-477 335-621 (638)
40 PF13429 TPR_15: Tetratricopep 99.4 1.9E-12 4.2E-17 127.6 14.1 256 114-373 14-276 (280)
41 TIGR00540 hemY_coli hemY prote 99.4 3.8E-10 8.3E-15 117.2 31.0 279 89-406 97-395 (409)
42 KOG2003 TPR repeat-containing 99.4 3.7E-10 8E-15 109.4 27.5 391 79-475 204-688 (840)
43 KOG1155 Anaphase-promoting com 99.4 2.5E-09 5.3E-14 104.5 32.9 254 217-475 235-494 (559)
44 KOG0495 HAT repeat protein [RN 99.4 4.1E-09 8.9E-14 106.9 35.1 372 108-490 479-892 (913)
45 KOG2076 RNA polymerase III tra 99.4 4.2E-08 9E-13 103.6 41.5 348 54-407 153-552 (895)
46 COG2956 Predicted N-acetylgluc 99.4 2.2E-09 4.7E-14 100.3 28.4 217 121-339 48-278 (389)
47 KOG1915 Cell cycle control pro 99.3 7.9E-08 1.7E-12 94.3 37.4 410 55-477 88-537 (677)
48 KOG0495 HAT repeat protein [RN 99.3 2.3E-07 4.9E-12 94.6 41.7 397 60-475 366-781 (913)
49 KOG1915 Cell cycle control pro 99.3 8.4E-08 1.8E-12 94.1 36.7 381 88-478 85-502 (677)
50 PF13041 PPR_2: PPR repeat fam 99.3 4.9E-12 1.1E-16 88.0 5.6 50 106-155 1-50 (50)
51 KOG2047 mRNA splicing factor [ 99.3 2.2E-07 4.7E-12 94.6 39.6 250 223-475 361-686 (835)
52 KOG1173 Anaphase-promoting com 99.3 2.8E-08 6E-13 99.7 32.9 393 74-474 47-516 (611)
53 COG3071 HemY Uncharacterized e 99.3 2.1E-08 4.5E-13 96.7 30.9 294 112-440 86-388 (400)
54 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.5E-16 84.8 6.7 50 308-357 1-50 (50)
55 TIGR02521 type_IV_pilW type IV 99.2 1.7E-09 3.7E-14 103.1 22.1 197 278-475 30-231 (234)
56 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 108.2 25.8 231 244-474 199-477 (508)
57 COG3071 HemY Uncharacterized e 99.2 1.4E-08 3.1E-13 97.8 25.6 274 191-474 97-388 (400)
58 COG2956 Predicted N-acetylgluc 99.2 5.4E-08 1.2E-12 91.2 27.9 216 156-373 48-277 (389)
59 PRK12370 invasion protein regu 99.2 1.2E-08 2.7E-13 110.1 25.9 260 208-477 255-536 (553)
60 KOG1174 Anaphase-promoting com 99.1 4.9E-07 1.1E-11 87.5 32.8 362 80-448 101-506 (564)
61 KOG4318 Bicoid mRNA stability 99.1 1.4E-09 3E-14 113.9 16.6 266 230-535 11-277 (1088)
62 TIGR02521 type_IV_pilW type IV 99.1 1.9E-08 4.2E-13 95.8 23.3 192 108-303 31-227 (234)
63 KOG4318 Bicoid mRNA stability 99.1 9.6E-09 2.1E-13 107.8 22.0 235 105-360 22-286 (1088)
64 PRK12370 invasion protein regu 99.1 5.2E-08 1.1E-12 105.2 27.5 239 159-407 277-532 (553)
65 KOG0547 Translocase of outer m 99.1 2.9E-07 6.4E-12 90.9 29.4 218 219-443 336-567 (606)
66 KOG4162 Predicted calmodulin-b 99.1 5E-07 1.1E-11 94.1 32.6 395 74-476 321-783 (799)
67 KOG1129 TPR repeat-containing 99.1 5.3E-09 1.1E-13 97.7 16.4 229 213-476 227-458 (478)
68 KOG1173 Anaphase-promoting com 99.1 2E-07 4.4E-12 93.7 28.1 278 174-455 240-531 (611)
69 KOG1840 Kinesin light chain [C 99.0 6.3E-08 1.4E-12 100.1 22.6 232 178-440 199-477 (508)
70 PRK11189 lipoprotein NlpI; Pro 99.0 6.5E-08 1.4E-12 95.7 20.8 210 259-477 41-266 (296)
71 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-07 5.8E-12 91.3 23.9 215 223-445 40-268 (296)
72 KOG1129 TPR repeat-containing 98.9 1.2E-07 2.5E-12 88.9 19.2 226 177-407 222-455 (478)
73 KOG0548 Molecular co-chaperone 98.9 3.7E-06 8.1E-11 84.5 28.1 369 88-477 14-456 (539)
74 KOG2047 mRNA splicing factor [ 98.9 3.2E-05 6.9E-10 79.3 34.8 176 75-257 101-294 (835)
75 COG3063 PilF Tfp pilus assembl 98.9 2.2E-07 4.8E-12 83.3 17.4 161 313-478 38-204 (250)
76 KOG1125 TPR repeat-containing 98.8 8.3E-08 1.8E-12 96.8 15.9 219 254-475 295-526 (579)
77 KOG2376 Signal recognition par 98.8 0.00023 4.9E-09 72.7 39.1 181 283-471 313-515 (652)
78 KOG3785 Uncharacterized conser 98.8 5.9E-06 1.3E-10 78.6 25.8 403 55-478 37-492 (557)
79 PF12569 NARP1: NMDA receptor- 98.8 6.6E-06 1.4E-10 86.3 27.2 123 283-407 198-331 (517)
80 KOG1127 TPR repeat-containing 98.7 1.1E-05 2.4E-10 86.4 27.4 409 58-473 474-993 (1238)
81 PF04733 Coatomer_E: Coatomer 98.7 2.1E-06 4.6E-11 83.8 20.6 158 283-447 106-270 (290)
82 KOG0985 Vesicle coat protein c 98.7 5.9E-05 1.3E-09 80.9 32.1 266 153-459 1058-1325(1666)
83 PRK04841 transcriptional regul 98.7 0.00019 4.1E-09 83.4 39.3 360 84-445 349-763 (903)
84 PRK04841 transcriptional regul 98.7 5.1E-05 1.1E-09 88.0 34.6 360 112-477 345-761 (903)
85 cd05804 StaR_like StaR_like; a 98.7 6E-05 1.3E-09 77.1 31.3 91 215-306 120-213 (355)
86 PF12569 NARP1: NMDA receptor- 98.7 1.7E-05 3.7E-10 83.2 27.2 285 84-374 12-334 (517)
87 COG3063 PilF Tfp pilus assembl 98.7 1.1E-05 2.4E-10 72.7 21.8 199 212-446 38-240 (250)
88 KOG1156 N-terminal acetyltrans 98.7 0.00017 3.7E-09 74.4 32.8 380 88-478 53-470 (700)
89 cd05804 StaR_like StaR_like; a 98.7 3.5E-05 7.6E-10 78.9 28.9 60 418-477 269-337 (355)
90 KOG1156 N-terminal acetyltrans 98.6 0.00097 2.1E-08 69.0 37.8 408 51-473 52-508 (700)
91 KOG4340 Uncharacterized conser 98.6 2.4E-05 5.2E-10 72.8 23.7 381 81-475 15-442 (459)
92 KOG4162 Predicted calmodulin-b 98.6 0.00037 8E-09 73.4 34.8 387 51-447 334-788 (799)
93 PF04733 Coatomer_E: Coatomer 98.6 9.4E-07 2E-11 86.3 15.3 217 246-475 37-264 (290)
94 KOG1174 Anaphase-promoting com 98.6 6.3E-05 1.4E-09 73.3 26.6 57 314-372 442-498 (564)
95 KOG3617 WD40 and TPR repeat-co 98.6 7.8E-05 1.7E-09 78.4 28.9 359 70-470 720-1168(1416)
96 KOG3616 Selective LIM binding 98.6 3.8E-05 8.3E-10 79.6 26.4 190 253-471 741-932 (1636)
97 KOG3616 Selective LIM binding 98.6 0.00015 3.3E-09 75.3 29.8 29 447-475 995-1023(1636)
98 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.6E-12 59.2 4.4 34 172-205 1-34 (34)
99 KOG0624 dsRNA-activated protei 98.5 0.0001 2.2E-09 70.1 25.4 306 113-447 43-375 (504)
100 KOG4340 Uncharacterized conser 98.5 1.2E-05 2.6E-10 74.8 18.0 304 145-472 12-335 (459)
101 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 57.8 4.3 33 274-306 2-34 (34)
102 PRK10370 formate-dependent nit 98.5 8.5E-06 1.8E-10 75.1 16.4 118 358-477 52-174 (198)
103 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.6E-10 76.9 17.8 181 278-476 32-232 (235)
104 KOG1070 rRNA processing protei 98.4 2.1E-05 4.6E-10 87.1 20.8 201 276-480 1455-1667(1710)
105 KOG3785 Uncharacterized conser 98.4 0.0011 2.4E-08 63.5 29.3 216 225-450 270-497 (557)
106 PRK15359 type III secretion sy 98.4 4.8E-06 1E-10 72.6 12.8 121 331-457 14-136 (144)
107 PLN02789 farnesyltranstransfer 98.4 8.8E-05 1.9E-09 73.5 23.0 177 295-474 88-300 (320)
108 PRK15359 type III secretion sy 98.4 5.1E-06 1.1E-10 72.4 11.9 94 383-476 26-121 (144)
109 KOG0548 Molecular co-chaperone 98.4 0.00025 5.5E-09 71.6 24.8 346 116-476 10-421 (539)
110 KOG0624 dsRNA-activated protei 98.4 0.0013 2.8E-08 62.9 27.9 301 84-411 46-372 (504)
111 KOG0985 Vesicle coat protein c 98.3 0.00085 1.8E-08 72.5 29.2 370 56-473 854-1246(1666)
112 KOG1070 rRNA processing protei 98.3 0.0002 4.4E-09 79.7 25.1 223 141-364 1455-1690(1710)
113 KOG1128 Uncharacterized conser 98.3 3.1E-05 6.7E-10 80.7 17.6 189 274-477 393-583 (777)
114 PRK15363 pathogenicity island 98.3 9.3E-06 2E-10 69.7 11.2 95 381-475 35-131 (157)
115 KOG1125 TPR repeat-containing 98.3 0.00014 3.1E-09 74.0 21.2 216 153-373 295-526 (579)
116 PRK10370 formate-dependent nit 98.2 0.00011 2.3E-09 67.8 18.0 154 286-450 23-181 (198)
117 TIGR03302 OM_YfiO outer membra 98.2 0.0001 2.2E-09 70.5 18.6 182 242-444 31-234 (235)
118 KOG1127 TPR repeat-containing 98.2 0.00051 1.1E-08 74.2 24.6 374 92-472 473-909 (1238)
119 KOG1128 Uncharacterized conser 98.2 6.2E-05 1.3E-09 78.5 17.3 215 175-407 395-613 (777)
120 PRK15179 Vi polysaccharide bio 98.2 8.9E-05 1.9E-09 81.0 19.5 137 309-449 85-224 (694)
121 KOG2376 Signal recognition par 98.2 0.0051 1.1E-07 63.2 30.1 336 116-471 20-400 (652)
122 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 54.2 4.1 35 109-143 1-35 (35)
123 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.6E-09 67.5 15.9 126 349-476 70-197 (257)
124 KOG3617 WD40 and TPR repeat-co 98.1 0.00024 5.1E-09 74.9 19.6 187 175-373 723-940 (1416)
125 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 52.5 4.5 35 311-345 1-35 (35)
126 COG5010 TadD Flp pilus assembl 98.1 0.00022 4.8E-09 65.8 16.7 153 316-471 72-226 (257)
127 PLN02789 farnesyltranstransfer 98.1 0.0028 6E-08 62.9 25.5 202 218-425 46-267 (320)
128 PRK14720 transcript cleavage f 98.1 0.00077 1.7E-08 74.5 23.1 238 139-423 26-267 (906)
129 KOG3081 Vesicle coat complex C 98.1 0.0035 7.5E-08 58.1 23.5 247 188-445 18-274 (299)
130 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 51.9 4.1 34 108-141 1-34 (34)
131 COG4783 Putative Zn-dependent 98.0 0.0016 3.4E-08 65.5 22.3 118 355-474 316-435 (484)
132 TIGR02552 LcrH_SycD type III s 98.0 4.2E-05 9E-10 66.0 10.2 96 381-476 17-114 (135)
133 PRK14720 transcript cleavage f 98.0 0.0029 6.4E-08 70.1 26.0 277 105-446 28-310 (906)
134 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 50.5 4.1 34 209-242 1-34 (34)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00029 6.4E-09 71.3 16.2 128 280-411 170-298 (395)
136 PRK15179 Vi polysaccharide bio 97.9 0.0017 3.6E-08 71.2 22.7 155 208-372 85-243 (694)
137 KOG3060 Uncharacterized conser 97.9 0.0017 3.8E-08 59.6 18.2 163 282-447 55-225 (289)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00028 6.1E-09 71.4 14.6 112 92-205 184-295 (395)
139 KOG1914 mRNA cleavage and poly 97.8 0.049 1.1E-06 55.7 33.6 394 73-473 17-536 (656)
140 COG4783 Putative Zn-dependent 97.8 0.006 1.3E-07 61.5 22.1 107 155-263 318-427 (484)
141 TIGR02552 LcrH_SycD type III s 97.8 0.00057 1.2E-08 58.8 13.1 113 332-448 5-120 (135)
142 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.3E-10 47.8 3.1 31 109-139 1-31 (31)
143 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 46.4 3.5 31 311-341 1-31 (31)
144 cd00189 TPR Tetratricopeptide 97.7 0.00036 7.8E-09 55.1 9.3 92 384-475 3-96 (100)
145 PF09976 TPR_21: Tetratricopep 97.6 0.0035 7.5E-08 54.7 15.6 113 323-438 24-143 (145)
146 KOG1914 mRNA cleavage and poly 97.6 0.11 2.5E-06 53.1 30.9 179 225-407 309-498 (656)
147 PF09976 TPR_21: Tetratricopep 97.6 0.0012 2.6E-08 57.6 12.3 125 347-473 14-144 (145)
148 PF13414 TPR_11: TPR repeat; P 97.6 0.00011 2.4E-09 54.8 4.8 64 412-475 2-66 (69)
149 KOG0550 Molecular chaperone (D 97.6 0.0041 9E-08 61.1 16.5 265 184-476 55-350 (486)
150 PLN03088 SGT1, suppressor of 97.6 0.00065 1.4E-08 69.0 11.8 98 353-452 10-109 (356)
151 PF04840 Vps16_C: Vps16, C-ter 97.6 0.1 2.2E-06 51.7 28.0 107 284-407 182-288 (319)
152 PF12895 Apc3: Anaphase-promot 97.6 6.4E-05 1.4E-09 58.7 3.4 77 395-472 3-83 (84)
153 KOG3060 Uncharacterized conser 97.6 0.037 7.9E-07 51.2 21.2 115 222-338 99-219 (289)
154 KOG0553 TPR repeat-containing 97.5 0.00036 7.8E-09 65.7 8.5 90 355-447 91-183 (304)
155 KOG3081 Vesicle coat complex C 97.5 0.039 8.4E-07 51.4 20.5 84 289-373 147-235 (299)
156 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0019 4.2E-08 53.9 11.5 97 351-447 8-110 (119)
157 KOG1538 Uncharacterized conser 97.5 0.017 3.7E-07 59.9 19.6 229 146-439 601-843 (1081)
158 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0012 2.6E-08 55.2 10.1 96 382-477 3-106 (119)
159 PRK15331 chaperone protein Sic 97.4 0.0012 2.6E-08 57.2 9.4 90 386-475 42-133 (165)
160 PLN03088 SGT1, suppressor of 97.4 0.002 4.4E-08 65.4 12.1 102 316-420 8-110 (356)
161 PRK02603 photosystem I assembl 97.3 0.0054 1.2E-07 55.3 13.6 131 309-462 34-166 (172)
162 PF13432 TPR_16: Tetratricopep 97.3 0.00033 7.1E-09 51.5 4.3 56 420-475 4-59 (65)
163 PRK10153 DNA-binding transcrip 97.3 0.0071 1.5E-07 64.3 15.8 140 307-448 334-488 (517)
164 cd00189 TPR Tetratricopeptide 97.3 0.0028 6.1E-08 49.8 10.2 62 383-444 36-99 (100)
165 PRK02603 photosystem I assembl 97.3 0.0019 4.2E-08 58.2 9.8 81 382-462 36-121 (172)
166 PF14938 SNAP: Soluble NSF att 97.3 0.03 6.4E-07 55.0 18.8 118 317-449 101-232 (282)
167 PF13432 TPR_16: Tetratricopep 97.2 0.00098 2.1E-08 48.9 6.3 61 387-447 3-65 (65)
168 KOG2053 Mitochondrial inherita 97.2 0.48 1E-05 51.7 28.4 210 92-306 24-253 (932)
169 KOG2053 Mitochondrial inherita 97.2 0.49 1.1E-05 51.7 40.0 214 55-276 24-258 (932)
170 CHL00033 ycf3 photosystem I as 97.2 0.0021 4.6E-08 57.7 9.3 93 381-473 35-139 (168)
171 CHL00033 ycf3 photosystem I as 97.2 0.019 4E-07 51.5 15.2 81 310-392 35-117 (168)
172 PF05843 Suf: Suppressor of fo 97.2 0.01 2.2E-07 58.1 14.4 133 311-446 2-140 (280)
173 PF14938 SNAP: Soluble NSF att 97.2 0.023 5E-07 55.8 16.8 110 286-407 101-222 (282)
174 PF06239 ECSIT: Evolutionarily 97.1 0.015 3.2E-07 52.7 13.6 105 241-360 44-153 (228)
175 COG4235 Cytochrome c biogenesi 97.1 0.0049 1.1E-07 58.6 11.0 101 378-478 153-258 (287)
176 KOG0553 TPR repeat-containing 97.1 0.0032 7E-08 59.5 9.4 96 318-418 89-187 (304)
177 PF12895 Apc3: Anaphase-promot 97.1 0.0015 3.3E-08 50.8 6.3 79 323-405 2-82 (84)
178 PF08579 RPM2: Mitochondrial r 97.1 0.0075 1.6E-07 48.3 9.9 80 111-190 28-116 (120)
179 PF13371 TPR_9: Tetratricopept 97.1 0.0012 2.5E-08 49.8 5.3 57 420-476 2-58 (73)
180 PF10037 MRP-S27: Mitochondria 97.1 0.0066 1.4E-07 61.9 12.1 119 139-257 62-186 (429)
181 KOG1130 Predicted G-alpha GTPa 97.0 0.0049 1.1E-07 60.5 10.0 129 346-474 196-342 (639)
182 PF05843 Suf: Suppressor of fo 97.0 0.014 3.1E-07 57.0 13.5 128 109-238 2-136 (280)
183 COG4700 Uncharacterized protei 97.0 0.067 1.5E-06 47.0 15.6 130 341-475 85-221 (251)
184 PF04840 Vps16_C: Vps16, C-ter 97.0 0.46 1E-05 47.2 24.0 111 346-473 178-288 (319)
185 PF13414 TPR_11: TPR repeat; P 96.9 0.0019 4.1E-08 48.0 5.4 65 380-444 2-69 (69)
186 PF14559 TPR_19: Tetratricopep 96.9 0.00066 1.4E-08 50.4 2.8 52 424-475 2-53 (68)
187 KOG2280 Vacuolar assembly/sort 96.9 0.79 1.7E-05 49.1 25.7 116 340-471 679-794 (829)
188 PF07079 DUF1347: Protein of u 96.9 0.61 1.3E-05 47.0 28.0 405 54-474 20-522 (549)
189 PF08579 RPM2: Mitochondrial r 96.8 0.019 4E-07 46.2 10.2 81 211-291 27-116 (120)
190 COG3898 Uncharacterized membra 96.8 0.62 1.3E-05 46.1 27.3 218 255-485 165-399 (531)
191 PF06239 ECSIT: Evolutionarily 96.8 0.014 3.1E-07 52.8 10.2 98 298-396 33-153 (228)
192 PRK15363 pathogenicity island 96.7 0.036 7.7E-07 48.0 11.8 88 215-304 41-128 (157)
193 PF10037 MRP-S27: Mitochondria 96.7 0.019 4E-07 58.7 11.8 119 174-292 62-186 (429)
194 PF14559 TPR_19: Tetratricopep 96.7 0.0012 2.6E-08 49.0 2.5 49 357-407 3-51 (68)
195 KOG2041 WD40 repeat protein [G 96.7 0.42 9.2E-06 50.5 21.3 150 92-268 749-902 (1189)
196 PF13281 DUF4071: Domain of un 96.7 0.2 4.4E-06 50.2 18.7 159 284-445 146-337 (374)
197 PRK10866 outer membrane biogen 96.7 0.27 5.9E-06 46.9 18.9 56 184-239 38-99 (243)
198 COG3898 Uncharacterized membra 96.7 0.79 1.7E-05 45.3 25.9 303 93-408 69-390 (531)
199 PF13431 TPR_17: Tetratricopep 96.6 0.00089 1.9E-08 41.6 1.2 33 436-468 2-34 (34)
200 PF12688 TPR_5: Tetratrico pep 96.6 0.038 8.2E-07 46.0 11.2 89 115-204 8-101 (120)
201 PF12688 TPR_5: Tetratrico pep 96.6 0.073 1.6E-06 44.3 12.7 92 215-306 7-102 (120)
202 COG4700 Uncharacterized protei 96.6 0.33 7.2E-06 42.9 16.8 63 242-304 87-149 (251)
203 KOG2796 Uncharacterized conser 96.5 0.16 3.5E-06 47.3 15.2 234 108-349 69-323 (366)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0075 1.6E-07 61.0 7.4 96 380-478 74-176 (453)
205 PRK10803 tol-pal system protei 96.4 0.016 3.4E-07 55.8 8.9 92 384-475 146-245 (263)
206 PRK10153 DNA-binding transcrip 96.4 0.2 4.3E-06 53.5 17.7 59 346-407 421-479 (517)
207 PRK10803 tol-pal system protei 96.3 0.067 1.4E-06 51.5 12.4 101 347-447 145-251 (263)
208 KOG2796 Uncharacterized conser 96.3 0.24 5.1E-06 46.2 14.9 134 312-445 179-318 (366)
209 PF13371 TPR_9: Tetratricopept 96.3 0.01 2.3E-07 44.5 5.5 61 389-449 3-65 (73)
210 PF13428 TPR_14: Tetratricopep 96.2 0.0067 1.5E-07 40.4 3.5 41 415-455 3-43 (44)
211 KOG0550 Molecular chaperone (D 96.2 1.2 2.6E-05 44.5 20.0 158 244-407 168-347 (486)
212 PRK10866 outer membrane biogen 96.1 1.3 2.8E-05 42.2 20.4 64 208-273 31-98 (243)
213 KOG1538 Uncharacterized conser 96.0 0.57 1.2E-05 49.2 17.6 91 380-476 746-846 (1081)
214 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.3 5E-05 43.0 27.7 80 73-155 39-121 (660)
215 KOG2280 Vacuolar assembly/sort 95.9 3.3 7.1E-05 44.7 26.7 84 82-167 443-531 (829)
216 KOG4555 TPR repeat-containing 95.8 0.052 1.1E-06 44.7 7.7 90 389-478 51-146 (175)
217 PF09205 DUF1955: Domain of un 95.7 0.21 4.5E-06 41.4 10.6 140 321-479 13-152 (161)
218 PF13424 TPR_12: Tetratricopep 95.7 0.022 4.7E-07 43.5 5.0 59 383-441 7-74 (78)
219 PF07079 DUF1347: Protein of u 95.7 2.8 6.2E-05 42.5 31.4 333 88-439 91-521 (549)
220 PF12921 ATP13: Mitochondrial 95.7 0.14 3.1E-06 43.0 10.2 49 341-389 48-96 (126)
221 COG4235 Cytochrome c biogenesi 95.5 0.17 3.7E-06 48.4 11.1 96 142-238 155-256 (287)
222 KOG1130 Predicted G-alpha GTPa 95.5 0.06 1.3E-06 53.1 8.1 256 117-373 26-343 (639)
223 KOG2041 WD40 repeat protein [G 95.5 4.5 9.7E-05 43.3 25.4 129 93-233 679-820 (1189)
224 KOG1920 IkappaB kinase complex 95.4 6.3 0.00014 45.0 23.9 30 175-205 788-819 (1265)
225 PF13424 TPR_12: Tetratricopep 95.3 0.016 3.5E-07 44.2 3.1 62 414-475 6-74 (78)
226 PF13525 YfiO: Outer membrane 95.3 0.63 1.4E-05 43.1 14.4 50 351-400 147-197 (203)
227 KOG0543 FKBP-type peptidyl-pro 95.3 0.12 2.6E-06 51.3 9.8 62 414-475 258-319 (397)
228 PF13512 TPR_18: Tetratricopep 95.2 0.44 9.5E-06 40.6 11.3 59 391-449 20-83 (142)
229 PF12921 ATP13: Mitochondrial 95.1 0.22 4.7E-06 41.9 9.6 51 376-426 47-101 (126)
230 PF03704 BTAD: Bacterial trans 95.0 0.06 1.3E-06 46.9 6.1 60 415-474 64-123 (146)
231 KOG0543 FKBP-type peptidyl-pro 94.9 0.21 4.5E-06 49.7 9.9 138 317-476 215-355 (397)
232 COG0457 NrfG FOG: TPR repeat [ 94.8 3.2 7E-05 38.2 26.0 193 279-475 59-264 (291)
233 COG1729 Uncharacterized protei 94.7 0.17 3.6E-06 47.9 8.5 89 384-475 145-243 (262)
234 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.18 4E-06 51.3 9.2 61 344-407 74-138 (453)
235 KOG1920 IkappaB kinase complex 94.6 4.7 0.0001 45.9 20.2 157 192-407 894-1052(1265)
236 PF13525 YfiO: Outer membrane 94.6 3.8 8.2E-05 37.9 18.5 72 357-433 122-198 (203)
237 PF04053 Coatomer_WDAD: Coatom 94.5 0.82 1.8E-05 47.7 13.8 158 220-409 272-430 (443)
238 PRK11906 transcriptional regul 94.5 0.46 1E-05 48.6 11.5 78 398-475 321-400 (458)
239 smart00299 CLH Clathrin heavy 94.4 2.8 6E-05 36.0 15.1 43 249-292 12-54 (140)
240 COG0457 NrfG FOG: TPR repeat [ 94.3 4.2 9E-05 37.4 23.9 193 249-445 64-268 (291)
241 PF13281 DUF4071: Domain of un 94.3 5.5 0.00012 40.2 18.5 72 183-254 146-227 (374)
242 smart00299 CLH Clathrin heavy 94.3 2.2 4.7E-05 36.7 14.2 121 284-424 12-136 (140)
243 KOG3941 Intermediate in Toll s 94.2 0.4 8.8E-06 45.2 9.5 101 296-397 51-174 (406)
244 PF00515 TPR_1: Tetratricopept 93.9 0.1 2.2E-06 32.2 3.7 32 414-445 2-33 (34)
245 PF03704 BTAD: Bacterial trans 93.9 0.59 1.3E-05 40.6 9.9 56 315-371 67-122 (146)
246 COG3118 Thioredoxin domain-con 93.9 2 4.4E-05 41.2 13.7 121 354-477 143-266 (304)
247 PF10300 DUF3808: Protein of u 93.7 2.5 5.4E-05 44.7 16.0 159 314-475 192-375 (468)
248 PF10300 DUF3808: Protein of u 93.7 2 4.3E-05 45.5 15.1 171 162-338 176-375 (468)
249 PF07719 TPR_2: Tetratricopept 93.6 0.17 3.7E-06 31.0 4.4 33 414-446 2-34 (34)
250 KOG1941 Acetylcholine receptor 93.6 1.4 2.9E-05 43.3 12.1 47 219-265 16-64 (518)
251 PF13512 TPR_18: Tetratricopep 93.5 2.2 4.7E-05 36.4 12.1 19 429-447 115-133 (142)
252 PF04184 ST7: ST7 protein; In 93.4 7.8 0.00017 40.1 17.7 57 315-371 264-321 (539)
253 PRK11906 transcriptional regul 93.3 5.9 0.00013 40.8 16.9 158 311-471 252-431 (458)
254 PF04053 Coatomer_WDAD: Coatom 93.2 1.5 3.3E-05 45.7 13.0 132 320-477 271-403 (443)
255 KOG2066 Vacuolar assembly/sort 93.0 17 0.00036 39.8 26.0 24 214-237 510-533 (846)
256 KOG3941 Intermediate in Toll s 92.9 0.74 1.6E-05 43.5 9.1 110 197-306 53-186 (406)
257 COG3118 Thioredoxin domain-con 92.6 8.4 0.00018 37.1 15.7 54 152-206 143-196 (304)
258 PRK11619 lytic murein transgly 92.5 20 0.00043 39.6 28.4 116 323-441 254-374 (644)
259 COG4105 ComL DNA uptake lipopr 92.5 9.8 0.00021 35.9 16.0 50 189-238 45-100 (254)
260 COG1729 Uncharacterized protei 92.1 1.5 3.3E-05 41.5 10.2 85 322-406 153-240 (262)
261 PF08631 SPO22: Meiosis protei 92.1 13 0.00027 36.4 23.0 18 422-439 255-272 (278)
262 KOG4234 TPR repeat-containing 91.7 0.43 9.4E-06 42.7 5.7 88 390-477 104-198 (271)
263 KOG4555 TPR repeat-containing 91.5 1.2 2.6E-05 36.9 7.6 90 354-445 52-147 (175)
264 PF02259 FAT: FAT domain; Int 91.4 17 0.00037 36.6 18.4 149 308-458 144-303 (352)
265 PRK15331 chaperone protein Sic 91.4 2.4 5.3E-05 37.1 9.9 85 219-305 47-131 (165)
266 PRK09687 putative lyase; Provi 91.1 16 0.00035 35.6 26.7 133 278-421 141-275 (280)
267 COG4105 ComL DNA uptake lipopr 90.7 15 0.00033 34.7 19.9 177 279-476 35-233 (254)
268 KOG4648 Uncharacterized conser 90.6 0.29 6.4E-06 47.3 3.9 110 353-469 105-217 (536)
269 KOG1585 Protein required for f 90.4 15 0.00033 34.3 15.9 83 387-470 156-250 (308)
270 PF09205 DUF1955: Domain of un 90.3 9.8 0.00021 31.9 13.0 61 313-374 89-149 (161)
271 PF04184 ST7: ST7 protein; In 90.1 5.1 0.00011 41.4 12.3 59 417-475 263-323 (539)
272 KOG2610 Uncharacterized conser 90.1 2.5 5.5E-05 41.0 9.6 156 322-480 115-280 (491)
273 PF00637 Clathrin: Region in C 90.1 0.02 4.2E-07 49.8 -4.2 85 250-337 13-97 (143)
274 PF13170 DUF4003: Protein of u 90.0 11 0.00024 37.1 14.4 61 327-388 160-224 (297)
275 COG5107 RNA14 Pre-mRNA 3'-end 90.0 25 0.00054 36.0 28.8 128 346-475 398-530 (660)
276 PF02259 FAT: FAT domain; Int 89.7 22 0.00047 35.9 17.2 64 412-475 145-212 (352)
277 PF13181 TPR_8: Tetratricopept 89.5 0.58 1.2E-05 28.6 3.4 31 415-445 3-33 (34)
278 KOG1258 mRNA processing protei 89.3 33 0.00071 36.5 30.7 379 76-461 45-489 (577)
279 COG3629 DnrI DNA-binding trans 89.1 2.9 6.2E-05 40.3 9.3 76 279-354 153-236 (280)
280 COG3629 DnrI DNA-binding trans 88.8 3 6.5E-05 40.2 9.2 76 178-253 153-236 (280)
281 KOG2114 Vacuolar assembly/sort 88.5 13 0.00029 40.8 14.5 179 246-439 336-516 (933)
282 COG4649 Uncharacterized protei 88.4 7.9 0.00017 34.1 10.4 27 281-307 169-195 (221)
283 PF13170 DUF4003: Protein of u 87.8 10 0.00023 37.2 12.6 23 126-148 80-102 (297)
284 PF13176 TPR_7: Tetratricopept 87.8 0.99 2.1E-05 28.2 3.7 26 110-135 1-26 (36)
285 KOG1941 Acetylcholine receptor 87.8 11 0.00024 37.3 12.1 193 180-372 45-273 (518)
286 KOG1585 Protein required for f 87.8 24 0.00052 33.1 16.2 24 212-235 94-117 (308)
287 PF13176 TPR_7: Tetratricopept 87.6 0.86 1.9E-05 28.5 3.3 25 416-440 2-26 (36)
288 KOG1464 COP9 signalosome, subu 87.0 28 0.00061 33.0 15.6 208 213-426 69-317 (440)
289 PF09613 HrpB1_HrpK: Bacterial 87.0 18 0.00039 31.6 12.0 86 355-445 20-109 (160)
290 PF09613 HrpB1_HrpK: Bacterial 86.6 2.9 6.2E-05 36.4 7.0 69 393-461 22-92 (160)
291 PF10602 RPN7: 26S proteasome 86.4 7.5 0.00016 35.0 10.0 59 280-338 37-101 (177)
292 PF08631 SPO22: Meiosis protei 86.2 35 0.00075 33.3 22.4 17 319-335 255-271 (278)
293 KOG2610 Uncharacterized conser 86.1 37 0.0008 33.4 16.9 149 222-372 116-274 (491)
294 KOG0890 Protein kinase of the 85.9 1.1E+02 0.0023 38.6 24.7 310 150-477 1390-1732(2382)
295 KOG1586 Protein required for f 85.8 30 0.00065 32.2 13.7 61 386-446 118-187 (288)
296 PF10602 RPN7: 26S proteasome 85.6 20 0.00043 32.2 12.3 95 311-407 37-139 (177)
297 PF02284 COX5A: Cytochrome c o 85.5 5.2 0.00011 31.7 7.1 62 326-389 26-87 (108)
298 PF13431 TPR_17: Tetratricopep 85.3 1.6 3.4E-05 26.9 3.5 31 167-198 3-33 (34)
299 TIGR02561 HrpB1_HrpK type III 85.0 4.5 9.8E-05 34.7 7.2 53 425-477 22-74 (153)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 85.0 5.7 0.00012 31.1 7.0 63 325-389 22-84 (103)
301 PF00515 TPR_1: Tetratricopept 84.2 2.4 5.2E-05 25.8 4.1 28 311-338 2-29 (34)
302 PF04097 Nic96: Nup93/Nic96; 84.1 73 0.0016 35.2 22.2 60 77-138 113-182 (613)
303 COG4785 NlpI Lipoprotein NlpI, 84.1 35 0.00075 31.4 12.8 160 310-476 99-266 (297)
304 PF13428 TPR_14: Tetratricopep 83.8 3.6 7.8E-05 27.0 5.0 27 312-338 3-29 (44)
305 COG4649 Uncharacterized protei 83.8 31 0.00066 30.6 14.6 87 288-374 103-196 (221)
306 TIGR02561 HrpB1_HrpK type III 83.7 28 0.0006 30.0 11.4 51 156-207 23-73 (153)
307 PRK09687 putative lyase; Provi 82.7 50 0.0011 32.2 26.5 75 276-355 203-277 (280)
308 TIGR02508 type_III_yscG type I 82.4 22 0.00048 28.2 9.3 86 159-248 21-106 (115)
309 PF07035 Mic1: Colon cancer-as 81.5 38 0.00082 30.0 15.5 41 106-150 27-67 (167)
310 KOG2114 Vacuolar assembly/sort 81.4 96 0.0021 34.6 20.4 76 386-462 710-786 (933)
311 KOG4570 Uncharacterized conser 81.3 14 0.00031 35.8 9.6 98 273-374 58-164 (418)
312 KOG4648 Uncharacterized conser 81.0 7.5 0.00016 38.0 7.8 86 317-413 104-198 (536)
313 KOG0276 Vesicle coat complex C 81.0 23 0.00049 37.6 11.7 37 191-230 599-635 (794)
314 KOG3364 Membrane protein invol 80.5 19 0.00042 30.3 8.9 62 414-475 33-99 (149)
315 PRK13800 putative oxidoreducta 80.4 1.2E+02 0.0027 35.3 26.2 222 199-440 625-847 (897)
316 PRK12798 chemotaxis protein; R 80.3 73 0.0016 32.6 21.1 180 292-474 125-322 (421)
317 PF14853 Fis1_TPR_C: Fis1 C-te 79.9 7.7 0.00017 26.8 5.6 49 451-525 5-53 (53)
318 PF00637 Clathrin: Region in C 78.6 0.86 1.9E-05 39.3 0.8 84 149-235 13-96 (143)
319 TIGR02508 type_III_yscG type I 77.7 34 0.00073 27.2 9.3 88 259-350 20-107 (115)
320 PF13174 TPR_6: Tetratricopept 77.5 4 8.7E-05 24.4 3.4 27 419-445 6-32 (33)
321 PF07719 TPR_2: Tetratricopept 77.2 5.7 0.00012 23.9 4.1 27 312-338 3-29 (34)
322 smart00028 TPR Tetratricopepti 76.8 5.2 0.00011 22.9 3.9 31 415-445 3-33 (34)
323 PF13374 TPR_10: Tetratricopep 75.7 5.3 0.00012 25.4 3.9 28 109-136 3-30 (42)
324 COG2976 Uncharacterized protei 75.5 64 0.0014 29.3 13.7 89 353-445 97-191 (207)
325 PF11207 DUF2989: Protein of u 75.1 30 0.00064 31.6 9.4 73 125-198 123-198 (203)
326 KOG0376 Serine-threonine phosp 75.1 6.6 0.00014 40.3 5.9 86 390-475 13-100 (476)
327 KOG1550 Extracellular protein 75.0 1.3E+02 0.0029 32.7 22.5 270 194-475 228-537 (552)
328 KOG1308 Hsp70-interacting prot 74.9 2.5 5.5E-05 41.3 2.8 89 393-481 126-216 (377)
329 COG1747 Uncharacterized N-term 74.6 1.2E+02 0.0026 32.0 18.2 155 212-373 69-233 (711)
330 KOG4570 Uncharacterized conser 74.6 26 0.00056 34.1 9.3 102 172-274 58-165 (418)
331 PF06552 TOM20_plant: Plant sp 74.4 17 0.00037 32.4 7.5 34 429-462 51-84 (186)
332 PF13374 TPR_10: Tetratricopep 74.3 6.4 0.00014 25.0 4.0 26 415-440 4-29 (42)
333 COG3947 Response regulator con 74.2 8.1 0.00018 37.0 5.8 61 415-475 281-341 (361)
334 PRK10941 hypothetical protein; 73.9 10 0.00023 36.6 6.8 61 415-475 183-243 (269)
335 PF07721 TPR_4: Tetratricopept 73.8 6.6 0.00014 22.3 3.4 22 181-202 4-25 (26)
336 PRK15180 Vi polysaccharide bio 73.2 25 0.00055 36.2 9.3 118 323-445 302-423 (831)
337 PF14853 Fis1_TPR_C: Fis1 C-te 73.1 5.2 0.00011 27.7 3.3 31 418-448 6-36 (53)
338 KOG1464 COP9 signalosome, subu 73.0 89 0.0019 29.8 12.2 177 293-469 41-253 (440)
339 KOG2396 HAT (Half-A-TPR) repea 71.9 1.4E+02 0.0029 31.4 18.8 277 94-406 268-555 (568)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 71.7 29 0.00063 27.4 7.3 45 227-271 25-69 (103)
341 PF07035 Mic1: Colon cancer-as 71.2 75 0.0016 28.2 16.4 39 164-202 15-53 (167)
342 PRK13342 recombination factor 70.7 1.2E+02 0.0026 31.6 14.3 48 211-258 229-279 (413)
343 PF11207 DUF2989: Protein of u 69.9 40 0.00087 30.8 9.0 43 358-400 153-197 (203)
344 PF13181 TPR_8: Tetratricopept 69.2 9.9 0.00021 22.9 3.8 27 312-338 3-29 (34)
345 PF13174 TPR_6: Tetratricopept 68.6 4.8 0.0001 24.0 2.2 27 450-476 3-29 (33)
346 PRK11619 lytic murein transgly 68.5 2E+02 0.0043 32.0 38.6 94 388-481 414-510 (644)
347 PRK15180 Vi polysaccharide bio 68.3 96 0.0021 32.2 12.1 126 356-483 300-427 (831)
348 PF09477 Type_III_YscG: Bacter 67.5 65 0.0014 26.0 9.3 88 156-247 19-106 (116)
349 PF02284 COX5A: Cytochrome c o 66.5 39 0.00084 27.0 7.1 47 227-273 28-74 (108)
350 PF13929 mRNA_stabil: mRNA sta 66.2 1.1E+02 0.0023 29.8 11.5 120 111-233 134-262 (292)
351 PRK13800 putative oxidoreducta 66.0 2.7E+02 0.0057 32.6 28.2 93 277-373 787-880 (897)
352 PF04910 Tcf25: Transcriptiona 65.6 1.1E+02 0.0023 31.2 12.4 64 412-475 99-167 (360)
353 KOG0276 Vesicle coat complex C 64.3 63 0.0014 34.5 10.2 99 88-204 649-747 (794)
354 KOG4234 TPR repeat-containing 64.1 58 0.0012 29.7 8.6 61 385-445 138-200 (271)
355 PF13762 MNE1: Mitochondrial s 61.9 88 0.0019 26.9 9.2 78 78-156 41-128 (145)
356 KOG4642 Chaperone-dependent E3 61.8 15 0.00032 34.3 4.7 54 420-473 51-104 (284)
357 PF04097 Nic96: Nup93/Nic96; 60.3 2.7E+02 0.0059 30.8 18.2 210 184-408 117-354 (613)
358 PHA02875 ankyrin repeat protei 59.3 2.2E+02 0.0048 29.4 16.7 148 185-345 72-230 (413)
359 COG4785 NlpI Lipoprotein NlpI, 59.1 1.5E+02 0.0033 27.5 16.3 63 177-239 98-163 (297)
360 KOG4077 Cytochrome c oxidase, 58.2 56 0.0012 27.2 6.9 71 328-409 67-137 (149)
361 COG2976 Uncharacterized protei 58.0 1.5E+02 0.0032 27.0 14.1 126 109-239 55-189 (207)
362 PF09477 Type_III_YscG: Bacter 57.6 1E+02 0.0022 25.0 9.6 88 258-349 20-107 (116)
363 PF10345 Cohesin_load: Cohesin 57.0 3.1E+02 0.0067 30.3 35.1 159 44-204 64-251 (608)
364 PF10366 Vps39_1: Vacuolar sor 56.1 89 0.0019 25.4 8.0 27 211-237 41-67 (108)
365 PRK10941 hypothetical protein; 55.5 70 0.0015 31.0 8.5 66 385-450 185-252 (269)
366 PF09670 Cas_Cas02710: CRISPR- 55.4 1.8E+02 0.0039 29.9 12.0 53 320-373 141-197 (379)
367 PF07163 Pex26: Pex26 protein; 54.1 1.4E+02 0.0031 28.8 9.9 88 317-407 90-184 (309)
368 TIGR03504 FimV_Cterm FimV C-te 53.8 34 0.00073 22.6 4.2 25 316-340 5-29 (44)
369 KOG4507 Uncharacterized conser 53.7 35 0.00076 36.2 6.3 93 358-453 620-716 (886)
370 COG4455 ImpE Protein of avirul 53.1 45 0.00097 30.8 6.2 63 384-446 4-68 (273)
371 KOG3807 Predicted membrane pro 53.1 1.4E+02 0.003 29.5 9.8 54 316-371 281-337 (556)
372 KOG0292 Vesicle coat complex C 52.5 28 0.00062 38.6 5.7 95 323-441 606-700 (1202)
373 PF14561 TPR_20: Tetratricopep 52.2 18 0.00039 28.3 3.3 43 434-476 9-51 (90)
374 KOG0551 Hsp90 co-chaperone CNS 50.2 80 0.0017 31.2 7.8 88 384-471 84-177 (390)
375 PF11768 DUF3312: Protein of u 50.1 1.5E+02 0.0033 31.6 10.3 23 284-306 413-435 (545)
376 PF10366 Vps39_1: Vacuolar sor 50.0 99 0.0022 25.1 7.4 39 93-136 29-67 (108)
377 TIGR03504 FimV_Cterm FimV C-te 49.8 37 0.0008 22.4 3.9 21 150-170 6-26 (44)
378 PF11663 Toxin_YhaV: Toxin wit 49.8 23 0.00049 29.8 3.5 30 122-153 109-138 (140)
379 PF10579 Rapsyn_N: Rapsyn N-te 49.7 35 0.00075 25.8 4.2 45 358-402 19-64 (80)
380 KOG2063 Vacuolar assembly/sort 49.5 4.6E+02 0.01 30.2 14.8 215 212-457 507-742 (877)
381 PF04190 DUF410: Protein of un 49.1 2.5E+02 0.0055 27.0 17.9 159 190-374 2-170 (260)
382 COG5159 RPN6 26S proteasome re 49.0 2.5E+02 0.0054 27.3 10.5 130 218-347 12-166 (421)
383 KOG0545 Aryl-hydrocarbon recep 48.5 72 0.0016 30.1 6.9 55 421-475 238-292 (329)
384 cd08819 CARD_MDA5_2 Caspase ac 48.4 1.3E+02 0.0028 23.4 7.4 39 291-330 48-86 (88)
385 PF11846 DUF3366: Domain of un 48.3 75 0.0016 28.9 7.4 36 409-444 140-175 (193)
386 PF15469 Sec5: Exocyst complex 48.0 2.1E+02 0.0045 25.7 10.5 47 322-374 69-115 (182)
387 KOG1550 Extracellular protein 46.0 4.3E+02 0.0093 28.8 22.1 176 93-274 228-427 (552)
388 COG3947 Response regulator con 45.9 62 0.0013 31.3 6.2 56 181-236 282-340 (361)
389 PF11846 DUF3366: Domain of un 45.7 73 0.0016 29.0 6.8 54 355-408 118-171 (193)
390 PF14669 Asp_Glu_race_2: Putat 45.6 2.4E+02 0.0051 25.7 10.2 95 99-203 98-206 (233)
391 PF12862 Apc5: Anaphase-promot 45.2 51 0.0011 25.9 4.9 52 424-475 9-69 (94)
392 KOG4279 Serine/threonine prote 44.9 2.2E+02 0.0047 31.6 10.5 181 211-445 203-398 (1226)
393 COG1747 Uncharacterized N-term 44.5 4.1E+02 0.009 28.2 22.1 162 278-446 65-238 (711)
394 PHA02875 ankyrin repeat protei 44.0 2.9E+02 0.0063 28.5 11.9 137 216-365 72-219 (413)
395 smart00386 HAT HAT (Half-A-TPR 43.7 25 0.00053 20.5 2.4 26 427-452 1-26 (33)
396 PF14863 Alkyl_sulf_dimr: Alky 43.4 73 0.0016 27.3 5.9 65 397-464 57-121 (141)
397 PF09986 DUF2225: Uncharacteri 43.3 1.4E+02 0.0031 27.7 8.3 64 414-477 119-195 (214)
398 PF07163 Pex26: Pex26 protein; 43.2 1.7E+02 0.0038 28.2 8.7 86 114-201 89-181 (309)
399 cd08819 CARD_MDA5_2 Caspase ac 42.9 1.6E+02 0.0034 22.9 6.9 65 162-228 21-85 (88)
400 PF13929 mRNA_stabil: mRNA sta 42.1 3.4E+02 0.0074 26.5 20.2 115 323-437 141-262 (292)
401 PRK10564 maltose regulon perip 42.0 41 0.0009 32.7 4.6 39 211-249 259-297 (303)
402 KOG4507 Uncharacterized conser 41.9 1.2E+02 0.0025 32.5 7.9 133 342-477 568-706 (886)
403 KOG0890 Protein kinase of the 41.1 9.1E+02 0.02 31.2 28.9 58 346-407 1671-1728(2382)
404 PF11663 Toxin_YhaV: Toxin wit 40.8 25 0.00055 29.6 2.5 33 321-355 106-138 (140)
405 TIGR01503 MthylAspMut_E methyl 40.6 2.4E+02 0.0052 29.4 9.8 250 224-520 29-315 (480)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 40.6 1.2E+02 0.0027 25.3 6.8 41 59-100 82-122 (126)
407 PF13762 MNE1: Mitochondrial s 39.9 2.5E+02 0.0054 24.3 11.8 76 283-358 43-128 (145)
408 PRK10564 maltose regulon perip 39.9 37 0.0008 33.0 3.9 36 111-146 260-295 (303)
409 COG4976 Predicted methyltransf 38.7 47 0.001 30.9 4.1 56 391-446 5-62 (287)
410 PF11848 DUF3368: Domain of un 38.2 1.2E+02 0.0026 20.3 5.1 33 321-353 13-45 (48)
411 KOG2422 Uncharacterized conser 37.7 5.2E+02 0.011 27.9 11.8 53 421-473 350-404 (665)
412 PF07720 TPR_3: Tetratricopept 37.6 77 0.0017 19.8 3.8 30 416-445 4-35 (36)
413 KOG0686 COP9 signalosome, subu 37.2 4.8E+02 0.01 26.8 11.6 58 281-338 152-215 (466)
414 PF12968 DUF3856: Domain of Un 37.1 1E+02 0.0023 25.5 5.4 21 453-473 106-126 (144)
415 PF10579 Rapsyn_N: Rapsyn N-te 37.0 78 0.0017 24.0 4.3 46 322-367 18-65 (80)
416 PF14689 SPOB_a: Sensor_kinase 36.9 54 0.0012 23.5 3.5 23 315-337 28-50 (62)
417 PRK11639 zinc uptake transcrip 36.7 1.8E+02 0.0038 25.9 7.6 54 106-159 23-76 (169)
418 KOG0292 Vesicle coat complex C 36.4 6.5E+02 0.014 28.8 12.6 130 288-441 652-781 (1202)
419 PF14561 TPR_20: Tetratricopep 35.6 2.1E+02 0.0046 22.2 7.1 62 412-473 21-85 (90)
420 KOG3824 Huntingtin interacting 35.3 46 0.001 32.3 3.7 61 391-451 126-188 (472)
421 PF06552 TOM20_plant: Plant sp 35.3 3E+02 0.0065 24.8 8.4 26 398-423 97-123 (186)
422 PF11848 DUF3368: Domain of un 35.0 1E+02 0.0022 20.7 4.4 31 120-150 14-44 (48)
423 cd08326 CARD_CASP9 Caspase act 34.8 1.7E+02 0.0038 22.4 6.2 40 290-329 41-80 (84)
424 KOG4077 Cytochrome c oxidase, 34.7 1.9E+02 0.0041 24.2 6.5 44 128-171 69-112 (149)
425 COG0735 Fur Fe2+/Zn2+ uptake r 34.4 2E+02 0.0043 24.8 7.3 34 112-145 24-57 (145)
426 KOG2659 LisH motif-containing 33.8 3.7E+02 0.0081 25.2 9.1 94 311-407 27-129 (228)
427 cd08326 CARD_CASP9 Caspase act 33.5 1.5E+02 0.0033 22.8 5.7 62 163-228 19-80 (84)
428 KOG0376 Serine-threonine phosp 33.1 78 0.0017 32.9 5.1 56 422-477 13-68 (476)
429 PF11525 CopK: Copper resistan 32.9 15 0.00034 26.5 0.1 21 593-613 9-29 (73)
430 cd00280 TRFH Telomeric Repeat 32.7 2.3E+02 0.0049 25.6 7.2 53 361-413 85-143 (200)
431 COG2909 MalT ATP-dependent tra 32.4 8.1E+02 0.018 28.0 24.6 216 188-407 425-685 (894)
432 PF12862 Apc5: Anaphase-promot 32.2 1.7E+02 0.0037 22.8 6.1 26 418-443 46-71 (94)
433 COG5159 RPN6 26S proteasome re 31.8 4.9E+02 0.011 25.3 13.7 151 115-265 10-186 (421)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 31.4 3.1E+02 0.0068 22.9 8.6 42 161-202 81-123 (126)
435 PF04190 DUF410: Protein of un 31.2 4.8E+02 0.01 25.1 17.3 82 176-272 88-169 (260)
436 PF10475 DUF2450: Protein of u 30.9 4.6E+02 0.0099 25.7 10.2 53 81-136 103-155 (291)
437 COG5108 RPO41 Mitochondrial DN 30.7 2.6E+02 0.0056 30.6 8.4 72 315-390 33-112 (1117)
438 PF10345 Cohesin_load: Cohesin 30.7 7.7E+02 0.017 27.2 32.8 48 322-369 373-428 (608)
439 PF11838 ERAP1_C: ERAP1-like C 30.5 5.3E+02 0.012 25.3 18.3 27 193-219 55-83 (324)
440 KOG4642 Chaperone-dependent E3 30.0 4.7E+02 0.01 24.9 9.0 81 289-371 20-104 (284)
441 PF10475 DUF2450: Protein of u 29.5 3.1E+02 0.0067 26.9 8.7 54 182-237 102-155 (291)
442 COG2178 Predicted RNA-binding 29.0 4.5E+02 0.0097 24.0 9.0 50 290-339 40-98 (204)
443 PF14689 SPOB_a: Sensor_kinase 28.7 1.5E+02 0.0033 21.1 4.7 30 344-373 22-51 (62)
444 COG0735 Fur Fe2+/Zn2+ uptake r 28.7 3.8E+02 0.0082 23.1 8.1 46 213-258 24-69 (145)
445 PF04034 DUF367: Domain of unk 28.5 3.6E+02 0.0077 22.7 7.5 59 380-438 65-124 (127)
446 COG2912 Uncharacterized conser 28.4 1.9E+02 0.0042 27.8 6.6 57 419-475 187-243 (269)
447 PRK13342 recombination factor 28.1 6.9E+02 0.015 25.9 15.4 44 312-355 229-275 (413)
448 KOG0687 26S proteasome regulat 28.0 6.2E+02 0.013 25.3 11.8 25 382-406 105-129 (393)
449 KOG4521 Nuclear pore complex, 27.7 1.1E+03 0.024 28.1 14.4 20 287-306 928-947 (1480)
450 KOG3824 Huntingtin interacting 27.6 1.8E+02 0.0039 28.5 6.2 54 355-411 126-181 (472)
451 KOG0687 26S proteasome regulat 27.5 6.3E+02 0.014 25.2 12.1 92 280-373 105-209 (393)
452 KOG3364 Membrane protein invol 27.3 2.3E+02 0.0049 24.2 6.0 31 418-448 76-106 (149)
453 PF10155 DUF2363: Uncharacteri 26.8 3.8E+02 0.0083 22.5 11.7 94 111-204 21-124 (126)
454 KOG2300 Uncharacterized conser 26.8 7.8E+02 0.017 26.1 18.9 145 93-237 298-473 (629)
455 PRK11639 zinc uptake transcrip 26.8 3.4E+02 0.0074 24.1 7.7 47 214-260 30-76 (169)
456 PF02607 B12-binding_2: B12 bi 26.7 1.8E+02 0.0038 21.7 5.1 40 219-258 11-50 (79)
457 PF12069 DUF3549: Protein of u 26.3 6.8E+02 0.015 25.2 13.1 85 286-373 173-258 (340)
458 KOG1586 Protein required for f 26.3 5.7E+02 0.012 24.3 15.0 91 359-449 128-231 (288)
459 COG5108 RPO41 Mitochondrial DN 26.1 3.8E+02 0.0082 29.4 8.7 74 148-221 33-115 (1117)
460 COG0790 FOG: TPR repeat, SEL1 25.8 6.1E+02 0.013 24.5 19.7 43 262-307 173-219 (292)
461 TIGR02270 conserved hypothetic 25.6 7.8E+02 0.017 25.6 25.8 238 150-411 45-282 (410)
462 KOG2066 Vacuolar assembly/sort 25.3 1E+03 0.022 26.9 27.3 125 77-209 393-536 (846)
463 COG4003 Uncharacterized protei 24.8 1.5E+02 0.0033 22.4 4.1 38 441-478 23-62 (98)
464 PF11768 DUF3312: Protein of u 24.8 5.2E+02 0.011 27.7 9.5 56 182-237 412-472 (545)
465 KOG0991 Replication factor C, 24.8 6E+02 0.013 24.1 10.7 132 286-443 137-268 (333)
466 PF09670 Cas_Cas02710: CRISPR- 24.3 7.9E+02 0.017 25.2 11.9 60 111-172 135-198 (379)
467 PF04090 RNA_pol_I_TF: RNA pol 24.2 3.4E+02 0.0074 24.9 7.1 60 415-474 43-103 (199)
468 cd07153 Fur_like Ferric uptake 23.9 1.7E+02 0.0038 23.7 5.0 47 113-159 5-51 (116)
469 PF10255 Paf67: RNA polymerase 23.8 4.2E+02 0.009 27.4 8.5 56 282-337 125-191 (404)
470 PF14669 Asp_Glu_race_2: Putat 23.7 5.7E+02 0.012 23.4 14.8 94 201-304 99-206 (233)
471 smart00638 LPD_N Lipoprotein N 23.7 9.8E+02 0.021 26.1 22.6 254 64-322 298-574 (574)
472 PF11838 ERAP1_C: ERAP1-like C 23.5 7.1E+02 0.015 24.4 17.9 28 92-119 55-84 (324)
473 KOG2582 COP9 signalosome, subu 23.3 6.2E+02 0.014 25.6 9.0 19 153-171 193-211 (422)
474 PF04910 Tcf25: Transcriptiona 23.1 8.1E+02 0.018 24.9 16.0 55 317-371 110-165 (360)
475 PRK14015 pepN aminopeptidase N 22.9 1.2E+03 0.027 27.0 13.6 119 350-469 719-846 (875)
476 cd08332 CARD_CASP2 Caspase act 22.9 2.7E+02 0.0058 21.7 5.5 36 189-224 45-80 (90)
477 cd00280 TRFH Telomeric Repeat 22.7 2E+02 0.0043 26.0 5.1 28 419-447 117-144 (200)
478 PF01347 Vitellogenin_N: Lipop 22.6 1.1E+03 0.023 26.1 18.8 267 59-355 323-617 (618)
479 PF10255 Paf67: RNA polymerase 22.4 1.5E+02 0.0032 30.6 5.0 58 383-440 124-191 (404)
480 PF02847 MA3: MA3 domain; Int 22.3 1.7E+02 0.0037 23.6 4.7 22 184-205 8-29 (113)
481 KOG4567 GTPase-activating prot 22.3 7.7E+02 0.017 24.4 10.3 73 330-408 263-345 (370)
482 cd07153 Fur_like Ferric uptake 22.2 2.5E+02 0.0055 22.7 5.7 47 215-261 6-52 (116)
483 KOG0686 COP9 signalosome, subu 22.1 8.8E+02 0.019 25.0 14.2 60 179-238 151-216 (466)
484 PF07575 Nucleopor_Nup85: Nup8 21.8 6.4E+02 0.014 27.5 10.2 244 94-354 284-539 (566)
485 KOG1524 WD40 repeat-containing 21.5 4.4E+02 0.0095 28.0 8.0 89 380-471 572-668 (737)
486 PF11123 DNA_Packaging_2: DNA 21.5 2.2E+02 0.0049 21.1 4.3 33 158-191 12-44 (82)
487 cd08332 CARD_CASP2 Caspase act 21.5 4E+02 0.0086 20.8 6.8 36 291-326 46-81 (90)
488 COG5191 Uncharacterized conser 21.4 1.4E+02 0.0031 29.2 4.3 76 376-451 102-180 (435)
489 COG4976 Predicted methyltransf 21.3 1.4E+02 0.003 28.0 4.0 55 423-477 5-59 (287)
490 PF12926 MOZART2: Mitotic-spin 21.1 4E+02 0.0087 20.6 7.1 63 140-204 7-69 (88)
491 PF11817 Foie-gras_1: Foie gra 20.7 3.6E+02 0.0078 25.7 7.1 20 317-336 185-204 (247)
492 TIGR02710 CRISPR-associated pr 20.7 9.3E+02 0.02 24.7 10.7 125 350-475 135-274 (380)
493 PF08225 Antimicrobial19: Pseu 20.4 69 0.0015 17.1 1.1 11 578-588 11-21 (23)
494 PF06957 COPI_C: Coatomer (COP 20.4 2.7E+02 0.0058 28.9 6.3 54 408-475 293-348 (422)
495 PHA03100 ankyrin repeat protei 20.3 1E+03 0.022 25.0 14.4 15 532-546 447-461 (480)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-117 Score=982.48 Aligned_cols=593 Identities=34% Similarity=0.607 Sum_probs=578.4
Q ss_pred hhhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 007134 20 PCRVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97 (616)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~ 97 (616)
+.+|..+|.+|...++.. +....|.+++.+|+ +..+.++++|..+++.|+. ++++++|.|+.+|+++| ++++|+
T Consensus 103 ~~~Al~~f~~m~~~~~~~--~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g-~~~~A~ 178 (697)
T PLN03081 103 HREALELFEILEAGCPFT--LPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCG-MLIDAR 178 (697)
T ss_pred HHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCC-CHHHHH
Confidence 455899999997654322 44678899999998 4788999999999999996 58999999999999999 999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCc
Q 007134 98 NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177 (616)
Q Consensus 98 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 177 (616)
++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++|..+.+.|+.+|
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
|++++|.++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHH
Q 007134 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417 (616)
Q Consensus 338 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~ 417 (616)
+.|+.||..||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.+++++|++.||..+|+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEE
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 497 (616)
+|+.+|+.+|+++.|..+++++++++|++...|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++++|.|+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHHHHhhhhcCCCCCcEEEEecccccC
Q 007134 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577 (616)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~ 577 (616)
+||..||+..+|++.++++..+|++.||.||+..+++++++++++..+.+||||||++||+++++++.||||+||||+|+
T Consensus 579 ~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~ 658 (697)
T PLN03081 579 SGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICK 658 (697)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 007134 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616 (616)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~d~~~~h~~~~g~csc~~~w 616 (616)
|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 659 dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 659 DCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-112 Score=965.17 Aligned_cols=586 Identities=37% Similarity=0.686 Sum_probs=569.4
Q ss_pred hhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 007134 21 CRVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98 (616)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~ 98 (616)
.+|..+|..|...+..|. ...|..++.+|+ ++.+.|+++|..+++.|+. +|+.++|+||.+|+++| ++++|++
T Consensus 270 ~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g-~~~~A~~ 344 (857)
T PLN03077 270 LEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLG-SWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcC-CHHHHHH
Confidence 347777888877776664 677889999998 5789999999999999996 68999999999999999 9999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcH
Q 007134 99 IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178 (616)
Q Consensus 99 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 178 (616)
+|+.|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++.
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 179 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
.++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999986 59999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHH
Q 007134 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418 (616)
Q Consensus 339 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ 418 (616)
.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEe
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 498 (616)
|+.+|..+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+++.||+|||++++++|.|++
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHHHHhhhhcCCCCCcEEEEecccccCc
Q 007134 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578 (616)
Q Consensus 499 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~ 578 (616)
||.+||+.++||.+|+++..+|++.||.||+..++ +.++++|+..+++||||||++||+|+++++.||||+||+|+|+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999887 55778899999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 007134 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614 (616)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~d~~~~h~~~~g~csc~~ 614 (616)
||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-72 Score=633.86 Aligned_cols=577 Identities=23% Similarity=0.359 Sum_probs=498.9
Q ss_pred hHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 22 RVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
++..+|..|...+..|. ...+..++++|. +.+..|+++|..+++.|.. .++.++|+|+.+|+++| +++.|+++
T Consensus 69 ~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g-~~~~A~~~ 143 (857)
T PLN03077 69 QALKLLESMQELRVPVD---EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFG-ELVHAWYV 143 (857)
T ss_pred HHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCC-ChHHHHHH
Confidence 38889999988776553 456788899998 4688999999999999985 68899999999999999 99999999
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHH
Q 007134 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179 (616)
Q Consensus 100 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 179 (616)
|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..++++.+.++|..+++.|+.||..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 259 (616)
++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|+..|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|++.|++++|.++|++|. +||..+|+++
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~m 461 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSI 461 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999886 999999999999999999999999999999997 5789999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeC---------
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG--------- 490 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~--------- 490 (616)
+.+|.++|+.++|..+|++|.+.-+.+..+|..+..+|++.|.++++.+++..|.+.|+.++.......++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999999643333355666666666666666666666666665555443211000000
Q ss_pred ----------CE---EEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhh---cccCHHHHH
Q 007134 491 ----------NR---VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL---SYHSEKIAI 554 (616)
Q Consensus 491 ----------~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~h~~~~a~ 554 (616)
.. -..++.|+..|++.+++.+. +++|.+.|+.||..++...+..+.+.+.+ ....+.+..
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l----f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL----FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 00 01235566677777777665 56788999999999987777666554443 122344444
Q ss_pred HhhhhcCCCCCcEEEEecccccCchhhHHHHHhhhcCc------eEEEecCCcccccccccc
Q 007134 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR------EIVVRDRSRFHHFKDGHC 610 (616)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~------~~~~~d~~~~h~~~~g~c 610 (616)
.+|+.+...++. ++++.+.++|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+-
T Consensus 618 ~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 618 KYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 577777766664 7899999999999999999999744 144556666666665543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-60 Score=527.54 Aligned_cols=449 Identities=17% Similarity=0.229 Sum_probs=408.4
Q ss_pred HHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 007134 23 VKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100 (616)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f 100 (616)
+..+|..|.. +....|..++.+|+ ++.+.|.++|..|.+.|+. +|.++||+||.+|+++| ++++|.++|
T Consensus 425 Al~lf~~M~~-------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G-~vd~A~~vf 495 (1060)
T PLN03218 425 AFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSG-KVDAMFEVF 495 (1060)
T ss_pred HHHHHHHcCC-------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCc-CHHHHHHHH
Confidence 5555555542 23566788899988 5789999999999999985 68999999999999999 999999999
Q ss_pred hhCC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHH--hCC
Q 007134 101 SHVQ----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR--NGF 174 (616)
Q Consensus 101 ~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~ 174 (616)
++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 9998 5899999999999999999999999999999999999999999999999999999999999999986 678
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999975 56799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~ 326 (616)
+.+|++.|++++|.++|+.|.+.|+.|+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999995 68999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cC-------
Q 007134 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AG------- 395 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g------- 395 (616)
++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+. |+.||..+|++++.+|.+ ++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~ 814 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVV 814 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999886 999999999999976432 22
Q ss_pred ------------CHHHHHHHHHhC---CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hcCCCCCCchhhhhHHhHh
Q 007134 396 ------------LVKQAYEYIQNM---LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL-QLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 396 ------------~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~ 459 (616)
..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.+.+..+|..|++.+.+
T Consensus 815 ~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 815 SFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred hhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 246799999999 699999999999987778888888888887763 2233346678889887732
Q ss_pred cccchHHHHHHHHHhhCCCccCCc
Q 007134 460 EQRWLNVQEVRRTMVKERVKKTPG 483 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~ 483 (616)
. .++|..+++.|.+.|+.|...
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 368999999999999988653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-60 Score=524.53 Aligned_cols=521 Identities=17% Similarity=0.198 Sum_probs=434.9
Q ss_pred HhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 007134 43 RKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120 (616)
Q Consensus 43 ~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 120 (616)
..|..++..|. +.++.+.+++..|.+.|..+.+...++.++..|.+.| .+++|.++|+.|+.||..+||.+|.+|++
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556666654 5789999999999999987678888899999999998 99999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 200 (616)
.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 201 FELMS----ERDLVAWNSVINGFASNGKPNEALTLFREMAS--EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 201 f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99996 38999999999999999999999999999976 6789999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHH
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 350 (616)
+.|+..+||++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999997 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHHcC
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACTIHG 427 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g 427 (616)
+|.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|+++|++| ++.||..||++|+.+|.+.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999875 99999999999999999999999999999988 58999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCC-CCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcch
Q 007134 428 HSAIAEIARSTLLQLEPK-HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 506 (616)
++++|.++++++.+.+.. +..+|..++.++. ++++++.++.+.+..-+ ++.. .......
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----~g~~--------------~~~n~w~ 828 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----SGRP--------------QIENKWT 828 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----cccc--------------ccccchH
Confidence 999999999999765432 2556777776543 24555555544332210 0000 0000111
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCcccccccchhh-hhhhhcccCHHHHHHhhhhcCCCCCc--EEEEecccccCchhhHH
Q 007134 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTP--VRVVKNLRVCADCHLAI 583 (616)
Q Consensus 507 ~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~-~~~~~~~h~~~~a~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~ 583 (616)
.++. .++++|.+.|+.||..++...+ .|. +.... .....+--.+++.+.++++. ..+++.+ |..-.+|+
T Consensus 829 ~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~ 900 (1060)
T PLN03218 829 SWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAF 900 (1060)
T ss_pred HHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHH
Confidence 2222 4578899999999988775544 221 11110 11122323345555555442 1234433 11225788
Q ss_pred HHHhhhcCce
Q 007134 584 KLISKVYSRE 593 (616)
Q Consensus 584 ~~~~~~~~~~ 593 (616)
.++..|..+.
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 8888887764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-58 Score=510.64 Aligned_cols=487 Identities=22% Similarity=0.320 Sum_probs=418.4
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..+++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~ 423 (616)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999886 999999999999999999999999999999997 68999999999999
Q ss_pred HHcCCcHHHHHHHHHHHh--cCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh-CCCccCCceeeEEeCCEEEEEEeCC
Q 007134 424 TIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK-ERVKKTPGHSLVELGNRVFEFFMGD 500 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 500 (616)
.++|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+...-. .++.+.
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l 472 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELL 472 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHH
Confidence 999999999999999975 4555 66799999999999999999999999986 47776532110 123344
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHH-HHhhhhcCCCCCcEEEEecccccCch
Q 007134 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA-IAFMLVNTAPGTPVRVVKNLRVCADC 579 (616)
Q Consensus 501 ~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a-~~~~~~~~~~~~~~~~~~~~~~c~~~ 579 (616)
...+..+++++.+ ++.+..|+..++-..+..+.+...+. -.+..+ ..+++.+...+.-+.+++.+..+|+.
T Consensus 473 ~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 473 GREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 5556666666553 45578888765433333322111110 001111 11233333233334566778999999
Q ss_pred hhHHHHHhhhcCceEE-------EecCCcccccccccc
Q 007134 580 HLAIKLISKVYSREIV-------VRDRSRFHHFKDGHC 610 (616)
Q Consensus 580 ~~~~~~~~~~~~~~~~-------~~d~~~~h~~~~g~c 610 (616)
.+|.+++..|..+.+- +--.+..|.|-.|-.
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999887432 112334566665543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.1e-25 Score=254.02 Aligned_cols=412 Identities=13% Similarity=0.062 Sum_probs=258.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+.++...+.+.. +.++.+++.+...|...| ++++|.+.|+++. ..+...+..+...+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666665543 345666667777777766 6777777776543 23455666666667777777777777
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---R 207 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~ 207 (616)
|+++...+ +.+..++..+...+...|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|.++++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 77766543 2344556666666666677777777777666554 44455666666777777777777777766643 3
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45566666777777777777777777666542 2344556666666666677777777776666543 344566666666
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
.+.+.|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|+.++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 66667777777776666653 244556666666666667777777766666543 3445555566666666666666
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++. ..| +..+++.+...+...|+ ++|+..+++++++
T Consensus 756 ~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 666666655 233445666666666666666666666666652 223 45566666666666666 5566666666666
Q ss_pred CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 443 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.5e-24 Score=250.15 Aligned_cols=443 Identities=12% Similarity=0.033 Sum_probs=357.0
Q ss_pred hhhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 20 PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
+-++...|.......+.. .........+....++.+.+...+..+++.. +........++..|.+.| ++++|.++
T Consensus 379 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~ 453 (899)
T TIGR02917 379 FEKAAEYLAKATELDPEN--AAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSG-QFDKALAA 453 (899)
T ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcC-CHHHHHHH
Confidence 345777777766554332 2222222222222356778888888887765 345667777888888988 99999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC
Q 007134 100 FSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176 (616)
Q Consensus 100 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 176 (616)
++.+.. ++..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.++++.+++.. +.
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 987753 467789999999999999999999999988753 2334467777888888999999999999998875 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 253 (616)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 778888999999999999999999988754 355678888999999999999999999987653 5567788889999
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988764 45677788899999999999999999988754 35778899999999999999999
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M 409 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 409 (616)
++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++..+.+.|++++|.+.++++. .
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998765 445677778888888999999999999988753 3666778888999999999999999988773 3
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.| +..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ .+|...++++.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34 677888888899999999999999999999999988888899999999999 8899999888764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=3e-29 Score=205.98 Aligned_cols=106 Identities=65% Similarity=1.041 Sum_probs=95.5
Q ss_pred ceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhh--------hhhhcccCHHHHH
Q 007134 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK--------EDALSYHSEKIAI 554 (616)
Q Consensus 483 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 554 (616)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.+++.++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6889887 9999999999997 345567788999999988888777655 5688999999999
Q ss_pred HhhhhcCCCCCcEEEEecc-cccCchhhHHHHHhhhcCceEEEecCCcccccc
Q 007134 555 AFMLVNTAPGTPVRVVKNL-RVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606 (616)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~d~~~~h~~~ 606 (616)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999997
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-19 Score=179.85 Aligned_cols=374 Identities=16% Similarity=0.140 Sum_probs=194.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH-HHHH
Q 007134 79 GKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL-KAIS 154 (616)
Q Consensus 79 ~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~~~~ 154 (616)
+..+.+.|-..| ++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+.++ +.|+.+...+-+ ....
T Consensus 119 ysn~aN~~kerg-~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 119 YSNLANILKERG-QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 333444444444 55555555554432 2345555555555555555555555555554 334433322222 1222
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCCccHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
..|.+++|...+.++++.. +.=..+|+.|...+-..|++..|..-|++..+-| ..+|-.|...|...+.+++|+..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 3455555555555555432 1223445555555555555555555555554322 23455555555555555555555
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 007134 232 FREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--- 307 (616)
Q Consensus 232 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--- 307 (616)
|.+.... .|+ ...+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.|++...
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 5555442 232 2344444445555556666666555555542 22244555555555556666666666655442
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHH
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFG 385 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 385 (616)
.-..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...+-+.|++++|...+++.. .+.|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 1234455555566666666666666655554 33332 345555555556666666666665554 44555 45555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
.|...|-..|+.+.|.+.+.+. .+.|. ...++.|...+...|++.+|++.++.+++++|+.+.+|..+..++.--.+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 6666666666666666555444 34453 345555666666666666666666666666666666555555544433333
Q ss_pred h
Q 007134 464 L 464 (616)
Q Consensus 464 ~ 464 (616)
.
T Consensus 507 ~ 507 (966)
T KOG4626|consen 507 T 507 (966)
T ss_pred c
Confidence 3
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=6.3e-18 Score=197.14 Aligned_cols=407 Identities=13% Similarity=0.020 Sum_probs=288.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CC---hhHHHHH------------HH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PN---IFTWNTM------------IR 116 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~---~~~~~~l------------i~ 116 (616)
+..+.+...+..+++.. |.++.++..|...|.+.| ++++|+..|++..+ |+ ...|..+ ..
T Consensus 283 g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 45566666666666654 456666777777777776 77777777765432 21 1123222 23
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 007134 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196 (616)
Q Consensus 117 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 196 (616)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 4556677777777777776642 1233445556666777777777777777777653 334455555666653 346677
Q ss_pred HHHHHhhcCCCC------------hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 007134 197 ACKVFELMSERD------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264 (616)
Q Consensus 197 A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (616)
|...++.++... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 777776654321 1234455667778899999999999988753 224556677888889999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHHcCCHHHHHH
Q 007134 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN----A---------VSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~---------~~~~~li~~~~~~g~~~~A~~ 331 (616)
..++.+.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|++
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999888753 3345555555666778899999999998876421 1 112345667888999999999
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC
Q 007134 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP 410 (616)
Q Consensus 332 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~ 410 (616)
+++. .+++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++..|...|++++|++.++... ..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 2344456677888899999999999999999863 33458889999999999999999999999874 45
Q ss_pred C-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC------chhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 P-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG------DYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
| +..++..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.+.++....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 4567788888999999999999999999988776543 344568899999999999999988753
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-19 Score=179.67 Aligned_cols=358 Identities=14% Similarity=0.166 Sum_probs=309.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcH-HHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV-FVQNSL 184 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~L 184 (616)
-..+|..+...+-..|+.++|+++|+.|.+. +|+ ...|..+..++...|+.+.|.+.+..+++. .|+. .+.+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 4568999999999999999999999999984 554 457999999999999999999999999885 4543 344556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCch
Q 007134 185 VHMYAAFGHVKDACKVFELMSE--RD-LVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGAL 260 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~ 260 (616)
....-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|++.|++.... .|+ ...|..+...+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 6666778999999998887654 32 568999999999999999999999999874 454 35788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
+.|...+.++.... +....++..|...|...|.++-|...|++.... =...||.|..++...|+..+|...|.+..
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998877653 445677778888899999999999999998653 35689999999999999999999999988
Q ss_pred hCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-
Q 007134 338 IGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA- 413 (616)
Q Consensus 338 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~- 413 (616)
.. .|+. ...+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+..+++. .++|+.
T Consensus 348 ~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 348 RL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred Hh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 73 4543 6788899999999999999999998874 4566 677899999999999999999999877 588974
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..++.+...|...|+.+.|.+.+.+++..+|.-.+++..|+.+|...|++.+|+.-++...+.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 799999999999999999999999999999999999999999999999999999999988764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.4e-17 Score=192.32 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=208.8
Q ss_pred hhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 007134 21 CRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100 (616)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f 100 (616)
-+|...|.......+... .....+...+..-.+..+.+......+++.. |.++.+...|...+...| +.++|+..|
T Consensus 129 ~eA~~~~~~~l~~~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g-~~~eAl~~l 204 (1157)
T PRK11447 129 EEALASYDKLFNGAPPEL-DLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSG-RRDEGFAVL 204 (1157)
T ss_pred HHHHHHHHHHccCCCCCh-HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccC-CHHHHHHHH
Confidence 347777777665544332 1112222222111245677888888888775 567888888888888888 899999998
Q ss_pred hhCCCCC------hhHH-----------------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCC
Q 007134 101 SHVQDPN------IFTW-----------------NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157 (616)
Q Consensus 101 ~~m~~~~------~~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~ 157 (616)
+++.... ...| ...+..+-.......|...+.++......|+... ......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 8764311 0111 1101100001111122222222222111111100 01122333445
Q ss_pred CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---hHHHHH------------HHHHH
Q 007134 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL---VAWNSV------------INGFA 220 (616)
Q Consensus 158 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------i~~~~ 220 (616)
++++|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+ ...+.
T Consensus 284 ~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555555555432 23444455555555555555555555554432 110 111111 22334
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhH-------------------
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV------------------- 281 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------------- 281 (616)
+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 4555555555555554432 1233334444445555555555555555554432 112222
Q ss_pred -----------------------HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007134 282 -----------------------NNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKE 335 (616)
Q Consensus 282 -----------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (616)
+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344555666777777777776653 2 445566677777777777777777777
Q ss_pred HHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh---------hhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 336 MEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI---------EHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 336 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
+.+. .|+ ...+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++
T Consensus 521 al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 521 LAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653 232 223333333455677777777777765321 000110 001122233344444444444444
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 406 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.-+ ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++..
T Consensus 598 ~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 598 QQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred hCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 211 122333344444444455555555555554444444444444444444444444444444443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=7.6e-18 Score=184.50 Aligned_cols=385 Identities=11% Similarity=-0.019 Sum_probs=264.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLAD 158 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 158 (616)
....|.+.| +++.|.+.|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+..++...|+
T Consensus 133 ~G~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNK-DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 344455555 6666666666533 245566666666666666666666666666653 333 3355556666666666
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH-----------------------
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----------------------- 215 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l----------------------- 215 (616)
+++|...+..+...+-..+... ..++.-+.+....+.+...++.-+. +..++..+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 6666666655544321111111 1111111111111222222222111 11111111
Q ss_pred -------HH-H-----HHhCCCccHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchh
Q 007134 216 -------IN-G-----FASNGKPNEALTLFREMASEG-VEP-DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280 (616)
Q Consensus 216 -------i~-~-----~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 280 (616)
+. + ....+++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 0 012357889999999998765 234 34567777777889999999999999998764 34466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHh
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACS 356 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 356 (616)
.+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 788889999999999999999998753 36788999999999999999999999999875 34 4566777888899
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-H-------HHHHHHHHHHHcC
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA-V-------IWRTLLGACTIHG 427 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~-------~~~~ll~a~~~~g 427 (616)
+.|++++|...|+...+ ..+.+...|+.+...+...|++++|.+.|++. ...|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999986 33445788999999999999999999999885 344421 1 1222223334469
Q ss_pred CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998888899999999999999999999988653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=7.7e-19 Score=182.38 Aligned_cols=298 Identities=15% Similarity=0.109 Sum_probs=168.0
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C------hhHHHHHHHHHHhCCCc
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D------LVAWNSVINGFASNGKP 225 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~ 225 (616)
+...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344456666666666665543 333445555666666666666666666555431 1 12345555555556666
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
++|+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 66666665555431 23344455555555555555555555555544321111000
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC--hhh
Q 007134 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--IEH 383 (616)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 383 (616)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .|+ ...
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~ 251 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEV 251 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHH
Confidence 01123344555556666666666666665532 112334555556666666666666666666542 122 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh---
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--- 459 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 459 (616)
++.++.+|.+.|++++|...++++. ..|+...+..++..+...|++++|...++++++..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccC
Confidence 5666677777777777777776652 456655556677777777777777777777777777654 33333433332
Q ss_pred cccchHHHHHHHHHhhCCCccCCce
Q 007134 460 EQRWLNVQEVRRTMVKERVKKTPGH 484 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (616)
.|+.+++..+++.|.+++++++|.+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCE
Confidence 4577788888888887777777753
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=5.6e-18 Score=175.94 Aligned_cols=294 Identities=13% Similarity=0.080 Sum_probs=222.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL---VFVQNSLVHMYA 189 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~ 189 (616)
.....+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445677899999999999999864 23445788888899999999999999999988643222 356888999999
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 190 AFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
+.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------------
Confidence 99999999999999975 46778999999999999999999999999876533221100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+...
T Consensus 180 ------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 180 ------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 11123445556666666666666666543 234466677778888888888888888887643222
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGA 422 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a 422 (616)
...++..+..++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 2456777888888889999999988888753 466666788888899999999999999766 467888888888877
Q ss_pred HHH---cCCcHHHHHHHHHHHh
Q 007134 423 CTI---HGHSAIAEIARSTLLQ 441 (616)
Q Consensus 423 ~~~---~g~~~~a~~~~~~~~~ 441 (616)
+.. +|+.+++...++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 654 5588888888887754
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=2.5e-16 Score=175.84 Aligned_cols=385 Identities=9% Similarity=0.018 Sum_probs=193.7
Q ss_pred HHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCC
Q 007134 83 IYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLAD 158 (616)
Q Consensus 83 i~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 158 (616)
+....-.| +.++|++++..... .+...+..+...+.+.|++++|+++|++.++. .|+ ...+..+...+...|+
T Consensus 22 ~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33344444 55555555554332 23333555555555555555555555555543 222 2333444445555555
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
+++|...++.+++.. +.+.. +..+..+|...|+.++|...++++.+ | +...+..+...+.+.|..++|++.+++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 555555555555542 33333 55555555555555555555555443 2 3334444555555555555555555443
Q ss_pred HHCCCCCCHH------HHHHHHHHHH-----hcCch---HHHHHHHHHHHHh-CCCCchh--HHHH---HHHHHHhcCCH
Q 007134 236 ASEGVEPDGY------TMVSLFSACA-----ELGAL---ALGRRAHTYVWKV-GLSDNVN--VNNA---LLDFYSKCGII 295 (616)
Q Consensus 236 ~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~~g~~ 295 (616)
.. .|+.. ....++.... ..+++ +.|.+.++.+.+. ...|+.. ...+ .+.++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 32 12110 0011111111 11112 4455555555433 1111111 0001 01223344666
Q ss_pred HHHHHHHHhcCCCC--hhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC---CHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 296 IAAQRVFREMRKRN--AVS--WSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 296 ~~A~~~f~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
++|.+.|+.+.+.+ ... -..+...|...|++++|+..|+++....... .......+..++...|++++|..++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 66666666665431 111 1113455666666666666666655432110 1123344444556666666666666
Q ss_pred HHhHHhhC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHH
Q 007134 369 KRMKDEYG----------IMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 369 ~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~ 433 (616)
+.+..... -.|+ ...+..+...+...|++++|++.++++. ..| +...+..+...+...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 66654210 0112 1233455566667777777777776652 334 4566666667777777777777
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..++++++++|+++..+..++..+.+.|++++|.++++.+.+
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777777777666666666667777777777777766654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2e-16 Score=172.87 Aligned_cols=326 Identities=10% Similarity=-0.032 Sum_probs=223.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
-++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|.+.++.+++.. +.+...+..+...|.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34556666777777777777776653222 2334444455556777777777777777664 445666777777777777
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 193 HVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 193 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
++++|...|++..+ .+...|..+...+.+.|++++|...++++......+ ...+.. +..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 77777777777654 245567777777777788887777777766543222 222222 2346667777777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCc
Q 007134 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKE----ALELFKEMEIGGFV 342 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~ 342 (616)
+.+....++......+...+.+.|++++|...|+.... .+...+..+...|.+.|++++ |+..|++..+. .
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--N 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--C
Confidence 76654333344445556677778888888888877653 255667777888888888775 78888888764 3
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHH-HHHH
Q 007134 343 PG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAV-IWRT 418 (616)
Q Consensus 343 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~-~~~~ 418 (616)
|+ ...+..+...+...|++++|...++...+. .|+ ...+..+...|.+.|++++|.+.++++. ..|+.. .+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 44 456777778888888888888888888753 243 5567777888888899999988888774 556543 3444
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+..++...|+.++|...++++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678888999999999999988888753
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=2.6e-15 Score=168.00 Aligned_cols=213 Identities=11% Similarity=0.003 Sum_probs=159.7
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKE 335 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (616)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555444444332 3333333334444578888888888876653 3444566667777888888888888888
Q ss_pred HHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-c
Q 007134 336 MEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-N 412 (616)
Q Consensus 336 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d 412 (616)
..+.. |+. ..+..+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|+..+++. ...| +
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 87653 433 2333333445566999999999998874 4477888999999999999999999999887 4667 5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
...+..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 67888888899999999999999999999999999999999999999999999999999887643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=4.1e-15 Score=166.07 Aligned_cols=386 Identities=10% Similarity=-0.042 Sum_probs=294.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV---QDPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+.++........ +.+...+..+...|...| ++++|..+|+.. ...+...+..+...+...|++++|+..
T Consensus 29 g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777777777776533 455667888889999998 999999999984 334677888999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 210 (616)
+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+..++.+.|..++|++.++.... +..
T Consensus 106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 9999886 3443337778888899999999999999999975 55667777788899999999999999998776 211
Q ss_pred --------HHHHHHHHHH-----hCCCc---cHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCchHHHHHHHH
Q 007134 211 --------AWNSVINGFA-----SNGKP---NEALTLFREMASE-GVEPDGY-TMV----SLFSACAELGALALGRRAHT 268 (616)
Q Consensus 211 --------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~ 268 (616)
....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1222222222 12233 7789999998854 2233221 111 11445567799999999999
Q ss_pred HHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007134 269 YVWKVGLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-------AVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340 (616)
Q Consensus 269 ~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 340 (616)
.+.+.+.+ |+. ....+...|...|++++|...|+++...+ ...+..+..++.+.|++++|.++++++....
T Consensus 262 ~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99887632 322 22335778999999999999999986432 2345566778899999999999999998742
Q ss_pred C-----------cCCH---HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 341 F-----------VPGE---VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 341 ~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
. .|+. ..+..+...+...|++++|+++++.+.. ..+.+...+..+...+...|++++|++.+++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 2332 2345566778899999999999999986 3445578899999999999999999999988
Q ss_pred CC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 407 ML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 407 m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.. ..|| ...+..+...+...|++++|+.+++++++..|+++..
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 73 6775 5677788888999999999999999999999998744
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=5e-16 Score=169.78 Aligned_cols=327 Identities=11% Similarity=-0.035 Sum_probs=265.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
.-..-++..+.+.|+++.|..+++..+... +.+......++..+...|++++|...|+++.. .+...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567778889999999999999998875 44455556666777889999999999999865 35667888999999
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (616)
+.|++++|+..|++..... +.+...+..+..++...|+.++|...+..+...... +...+..+. .+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHHH
Confidence 9999999999999998752 334567778888999999999999999988776432 333443333 4788999999999
Q ss_pred HHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH----HHHHHHHhH
Q 007134 301 VFREMRKR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE----GFSYFKRMK 372 (616)
Q Consensus 301 ~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~ 372 (616)
.++.+.+. +...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++ |...|+.+.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987653 23344555678899999999999999998754 2345667778888999999986 899999987
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+. -+.+...+..+...+.+.|++++|...+++.. ..| +...+..+..++...|++++|...++++++.+|+++..+
T Consensus 278 ~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 278 QF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 52 23347789999999999999999999998873 556 456788889999999999999999999999999877666
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..++.++...|++++|.+.++...+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677889999999999999999887653
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.5e-15 Score=166.34 Aligned_cols=397 Identities=12% Similarity=0.003 Sum_probs=286.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+...+..+++.. | ++..+..+...|.+.| ++++|+..++...+ .++..|..+..+|...|++++|+.-
T Consensus 141 ~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46788999999988764 3 4678888899999998 99999999986543 4677899999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCC-----------------------------CcHHHH
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-----------------------------SLVFVQ 181 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~ 181 (616)
|......+. .+......++..... ..+.......++.... .+....
T Consensus 217 ~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 217 LTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 987765421 122222222221111 1111111111111100 000000
Q ss_pred HHHHHHH------HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHH
Q 007134 182 NSLVHMY------AAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMV 248 (616)
Q Consensus 182 ~~Li~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 248 (616)
..++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHH
Confidence 1111111 1236899999999987642 3457888889999999999999999999875 444 55788
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF 325 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 325 (616)
.+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999998874 55678899999999999999999999998864 356678888999999999
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh-h-------hHHHHHHHHHhcCCH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI-E-------HFGCMVDLLGRAGLV 397 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~ 397 (616)
+++|+..|++..... +.+...+..+...+...|++++|...|+..... .|+. . .++.....+...|++
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999988742 224577888888999999999999999998752 2321 1 122222334457999
Q ss_pred HHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 398 KQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 398 ~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.... ......+.+|.++.....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHH
Confidence 9999999885 45664 567899999999999999999999999988765322 122334555665554443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.6e-14 Score=154.20 Aligned_cols=424 Identities=10% Similarity=0.018 Sum_probs=307.6
Q ss_pred hHHHHHHhhcCHHHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHH-HH--HHHHHh
Q 007134 45 CITLLQVCASSKHKLKQVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN-TM--IRGYAE 120 (616)
Q Consensus 45 ~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~-~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~ 120 (616)
-..++.+-.++...|...+..+++.. |.+ +.++ .++..+...| +.++|+..+++...|+...+. .+ ...|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34455555578889999999998876 444 3445 8888888888 999999999998876444433 33 457778
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 200 (616)
.|++++|+++|+++.+... -|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8999999999999998642 23456667778888999999999999998876 45555555565566556777679999
Q ss_pred HhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCc---hHHH
Q 007134 201 FELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM------VSLFSAC-----AELGA---LALG 263 (616)
Q Consensus 201 f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-----~~~~~---~~~a 263 (616)
++++.+ | +...+..+..+..+.|-...|+++..+-... +.+...-. ...++.- ....+ .+.|
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999865 3 5667788889999999999998877653321 11111111 1111100 01112 3444
Q ss_pred HHHHHHHHHh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC--Chh--hHHHHHHHHHHcCCHHHHHHHH
Q 007134 264 RRAHTYVWKV-GL-SDNVNV-NNA---LLDFYSKCGIIIAAQRVFREMRKR--NAV--SWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 264 ~~~~~~~~~~-g~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~--~~~--~~~~li~~~~~~g~~~~A~~l~ 333 (616)
..-++.+... +- ++.... ..+ .+-++.+.|+..++.+.|+.+... .+. +--++..+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4455554442 22 222222 233 344677889999999999999854 233 4456789999999999999999
Q ss_pred HHHHhCC-----CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC------------CCCC-hhhHHHHHHHHHhcC
Q 007134 334 KEMEIGG-----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG------------IMPK-IEHFGCMVDLLGRAG 395 (616)
Q Consensus 334 ~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g 395 (616)
+++.... ..++......|.-++...+++++|..+++.+.+... ..|| ...+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9986642 122333456788899999999999999999987311 1122 233455677889999
Q ss_pred CHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 396 LVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 396 ~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
++.+|++.++++. ..| |..++..+...+...|.+.+|+..++.+..++|++.......+..+...|+|.+|.++.+..
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999883 556 88899999999999999999999999999999999999999999999999999999998877
Q ss_pred hhC
Q 007134 474 VKE 476 (616)
Q Consensus 474 ~~~ 476 (616)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 553
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=1.1e-13 Score=155.14 Aligned_cols=263 Identities=13% Similarity=0.031 Sum_probs=212.6
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45567777777766 7888899988887764 466655545555667899999999999987654 344445667778
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTL---VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
.+.+.|+.++|.+.|+...+.++..++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998876544433333 3333445999999999999987 457788888999999999999999
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...|+.... .-+.+...++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++
T Consensus 629 ~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999985 23334778888989999999999999999877 3566 6789999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 443 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
+|++.......+.+..+..+++.|.+.++..-..++.
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999888889999999999999999988876654443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=4.8e-13 Score=146.95 Aligned_cols=383 Identities=9% Similarity=0.029 Sum_probs=279.5
Q ss_pred HHHhCCCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHH--HHHHHcCCC
Q 007134 85 AIVSLSFPMSYAHNIFSHVQDPNIF---TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFL--LKAISKLAD 158 (616)
Q Consensus 85 ~y~~~~~~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~l--l~~~~~~~~ 158 (616)
...+.| +++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|+
T Consensus 43 i~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 345777 899999999987753322 23388888999999999999999987 343333 3333 457778899
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--CCCccHHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS--NGKPNEALTLFREMA 236 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 236 (616)
+++|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999985 55577788889999999999999999999986443332224444444 566666999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchh------HHHHHHHHH---H--hcCC---HHHHHHHH
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN------VNNALLDFY---S--KCGI---IIAAQRVF 302 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~y---~--~~g~---~~~A~~~f 302 (616)
+.. +-+...+.....++.+.|-...|.++...-... +.+... ....+|..- . ...+ .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 874 345667778888889999888888766542211 111100 000111100 0 1112 34455555
Q ss_pred HhcCC-----CCh-hhH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 303 REMRK-----RNA-VSW----STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 303 ~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.+.. |.. ..| --.+.++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 55442 211 122 23466888899999999999999998866455688899999999999999999999997
Q ss_pred HhhC----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------------CC--cH-HHHHHHHHHHHHcCCcHH
Q 007134 373 DEYG----IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM--------------PP--NA-VIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 373 ~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--d~-~~~~~ll~a~~~~g~~~~ 431 (616)
...+ .+++......|.-+|..++++++|..+++++.- .| |- .....++..+.-.|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6422 233455567889999999999999999988721 13 32 234445667889999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|++.+++++...|.|+.....+++++...|...+|.+.++....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999977654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=6.1e-12 Score=132.68 Aligned_cols=411 Identities=12% Similarity=0.052 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCchHHHH
Q 007134 56 KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN------IFTWNTMIRGYAESANPLLAVE 129 (616)
Q Consensus 56 ~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~ 129 (616)
...|.++...+-+.. +.+|++.|.|.+.|.-.| ++..+..+-.++...+ ..+|-.+.++|-..|++++|..
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 445566665555544 467788888888777776 7777777766554322 3456677788888888888888
Q ss_pred HHHHHHHCCCCCCcch--HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHhh
Q 007134 130 LYSKMHVSGIKPDTHT--YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG----HVKDACKVFEL 203 (616)
Q Consensus 130 l~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~~~f~~ 203 (616)
.|.+..+. .||.++ +..+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 87666653 345433 4456677777888888888888877763 555667777777777664 44555555555
Q ss_pred cCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---
Q 007134 204 MSER---DLVAWNSVINGFASNGKPNEALTLFREM----ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV--- 273 (616)
Q Consensus 204 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--- 273 (616)
..++ |..+|-.+...|-+..- ..++..|... ...+-.+.....+.+.......|+++.|...+......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 4432 33444444443333322 2224443332 22233344444555555555555555555555444332
Q ss_pred CCCCch------hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------------------CCh
Q 007134 274 GLSDNV------NVNNALLDFYSKCGIIIAAQRVFREMRK-------------------------------------RNA 310 (616)
Q Consensus 274 g~~~~~------~~~~~li~~y~~~g~~~~A~~~f~~m~~-------------------------------------~~~ 310 (616)
...++. .+--.+...+-..++.+.|.+.|..+.+ .|+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 011111 1111122223333344444444443332 233
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHHHHHHHhc------------CCChHHHHHHHHHhHHhhCC
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSH------------CGMVDEGFSYFKRMKDEYGI 377 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~ 377 (616)
..|.-+...+.....+..|.+-|...... ...+|.++..+|.+.|.. .+..++|+++|..+.+ .-
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 33444444444444444444433333221 112444444444443321 2334455555555544 23
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-C-CCCCchhhh
Q 007134 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE-P-KHSGDYVLL 453 (616)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~~~l 453 (616)
+.|...-|.+.-.++..|++.+|.++|.+.. ..-+..+|..+...|...|++..|++.|+..++.. + +++.....|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 3344445555555556666666666665542 11233455555566666666666666665554322 1 123334455
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.++.+.|++.+|.+.....+.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 5566666666666555554443
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7.3e-12 Score=132.08 Aligned_cols=367 Identities=13% Similarity=0.034 Sum_probs=255.8
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK--PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
.|++..|.|...|.-.|++..+..+...+...... .-...|-.+.+++-..|++++|...|.+..+..-..-+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46777788888888888888888888877764211 1123466777888888888888888888776542222444556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC----CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNG----KPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
|..+|.+.|+++.+...|+.+.+ | +..+.-.|...|+..+ ..++|..++.+..+.- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 78888888888888888888754 2 4456666666676664 3455666666555432 3456666666655544
Q ss_pred cCchHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Chh------hHHHHHHH
Q 007134 257 LGALALGRRAHTYV----WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-------NAV------SWSTLVVG 319 (616)
Q Consensus 257 ~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------~~~------~~~~li~~ 319 (616)
. ++.....++..+ ...+-.+.+.+.|.+...+...|++++|...|...... |.. +--.+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 3 333335555444 34555677889999999999999999999999876532 221 12224455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
+-..++.+.|.+.|...... .|.-++ |..++......+...+|...+..... ....+...++-+...+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhc
Confidence 55677899999999998874 465543 44444333345788889988888876 44555666667777888888887
Q ss_pred HHHHHHHhC----CCCCcHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 399 QAYEYIQNM----LMPPNAVIWRTLLGACTI------------HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 399 ~A~~~~~~m----~~~pd~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
.|.+-|+.. ...+|.++..+|.+.|.+ .+..++|++.|.++++.+|.|.-+-.-++-+++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 777744433 345788888888886642 2346789999999999999988777889999999999
Q ss_pred chHHHHHHHHHhhCCC
Q 007134 463 WLNVQEVRRTMVKERV 478 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~~ 478 (616)
+.+|..+|.+.++...
T Consensus 662 ~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS 677 (1018)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999988654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.7e-12 Score=119.91 Aligned_cols=333 Identities=17% Similarity=0.178 Sum_probs=232.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 185 (616)
++..++..||.++++-...+.|.++|++-.....+.+..+||.+|.+-. +..++.+..+|+...+.||..++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 5667999999999999999999999999998888999999999998754 334588999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHH----hhcC----CCChhHHHHHHHHHHhCCCccH-HHHHHHHHHHC----CCCC----CHHHHH
Q 007134 186 HMYAAFGHVKDACKVF----ELMS----ERDLVAWNSVINGFASNGKPNE-ALTLFREMASE----GVEP----DGYTMV 248 (616)
Q Consensus 186 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~p----~~~t~~ 248 (616)
...++.|+++.|++.+ .+|. +|...+|..+|..+.+.++..+ |...+.+.... -++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999998766554 4453 4888999999999999888755 44445554332 2222 556788
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHH
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVG----LSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRK----RNAVSWSTLV 317 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li 317 (616)
+.++.|.+..+.+.|.++++.+.... +.|+ ...|..+..+.+....++.-...|+.|.. ++..+-..++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 99999999999999999998775321 2232 34556777888888889999999999875 4555666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC-Ch-------------HHHHHHHHHhHH----hhCCCC
Q 007134 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG-MV-------------DEGFSYFKRMKD----EYGIMP 379 (616)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~-------------~~a~~~~~~m~~----~~~~~p 379 (616)
.+....|.++-.-+++..|...|-.-+...-.-++.-+++.. .. +-|..+++.... ......
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 788888888888888888877664333333323333333221 00 001111111100 002223
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
.....++..-.+.|.|+.++|.+++.-. +..|......-|+.+..+.++...|..+++.+...
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 3455667777788888888887777544 23344334445555666666777777777666443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=1.7e-11 Score=128.47 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=226.6
Q ss_pred HcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCCccHHHH
Q 007134 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM---SERDLVAWNSVINGFASNGKPNEALT 230 (616)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (616)
...|+++.|.+++.++++.. +.....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33488888888888888775 556677788888888888888877665433 33466777777777778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 007134 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA----LLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 231 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.|.+.++.. +++...+..-...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888877763 44555555566677777888888887777777543333333333 3445556666677777777665
Q ss_pred C--C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------------------------cCCHHHHHHHHHH
Q 007134 307 K--R---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF---------------------------VPGEVTFVGVLYA 354 (616)
Q Consensus 307 ~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~a 354 (616)
. . +...+|.++..|.+..+++.|......+..... .++...+ -+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 4 1 445677778888888888888887777765111 1222121 11222
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC---CcHHHHHHHHHHHHHcCCc
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP---PNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---pd~~~~~~ll~a~~~~g~~ 429 (616)
+.+....+....+.....+. .+.| +...|.-+.++|.+.|++.+|+++|..+.-. -+...|-.+...+...|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33444444444444444442 5333 4778999999999999999999999988422 2578999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
++|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999875
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2e-14 Score=141.71 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=109.5
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007134 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF-SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (616)
...+.+.|++++|++++++......+|+...|..++ ..+...++.+.|.+.++.+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 455666677777777775544332234444444433 344456677777777777766542 245556666666 67788
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 295 IIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 295 ~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
+++|.+++...-+ ++...+..++..+...++++++.+++++..... ..++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776533 456677778888888999999999999876532 3456667777888888999999999999998
Q ss_pred HHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 372 KDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 372 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+. .|+ ....+.++..+...|+.+++.++++... ...|...|..+..++...|+.++|...++++.+..|+++.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 863 354 7778889999999999998877776652 2345668889999999999999999999999999999999
Q ss_pred chhhhhHHhHhcccchHHHHHHHHHh
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
....+++++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.5e-10 Score=111.51 Aligned_cols=380 Identities=13% Similarity=0.100 Sum_probs=239.8
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhH-------HHHHHHHHHhcCCch-HHHHHHHHHHHCC-------
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFT-------WNTMIRGYAESANPL-LAVELYSKMHVSG------- 138 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~-------~~~li~~~~~~g~~~-~A~~l~~~m~~~g------- 138 (616)
..+..-|.|+.|.+.. .+.++.-+++.|...++.. .-.|+..| .+.++- --.+.|-.|...|
T Consensus 114 ~~V~~E~nL~kmIS~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 114 LQVETENNLLKMISSR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred hhhcchhHHHHHHhhc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-cCCCCcchhHHHHhhcccccccccccc
Confidence 4455678899988775 5999999999987644321 11122222 222211 1122333332221
Q ss_pred ------------CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 007134 139 ------------IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS- 205 (616)
Q Consensus 139 ------------~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~- 205 (616)
.+-+..|+.++|.++++--..+.|.+++++......+.+..++|.+|.+-.-..+ .++..+|.
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 2346678999999999999999999999988777678888899998876543333 44555553
Q ss_pred ---CCChhHHHHHHHHHHhCCCccH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHHh--C-
Q 007134 206 ---ERDLVAWNSVINGFASNGKPNE----ALTLFREMASEGVEPDGYTMVSLFSACAELGALAL-GRRAHTYVWKV--G- 274 (616)
Q Consensus 206 ---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~--g- 274 (616)
.||..|+|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+.+.++..+ +..+...+... |
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 5899999999999999998765 56788889999999999999999988888777644 33333333321 1
Q ss_pred -C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 275 -L----SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----------NAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 275 -~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+ +.|...+..-++.+....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 224455556667777888888888877655422 123455667777888888888999999987
Q ss_pred CCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHH---H
Q 007134 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV---I 415 (616)
Q Consensus 339 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~---~ 415 (616)
.-.-|+..+...+++|..-.|.++-..+++..++. +|-....... ++.+.++-.-...|+.. -
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~-------------eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLR-------------EEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHH-------------HHHHHHHhcCCCCCCChHHHH
Confidence 77778888989999998888888888888888765 2322221111 22222222222333322 2
Q ss_pred HHHHHHHHHHcCCcHHHHH-HHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 416 WRTLLGACTIHGHSAIAEI-ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+..+..-|.. ++.++.+ .-.++.+.+ -.+......+.++.+.|+.++|.+++....+++
T Consensus 493 l~~~~ak~aa--d~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 493 LQVAFAKCAA--DIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHH--HHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2222222211 1111111 111222111 123345566677789999999999998886543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.3e-11 Score=119.31 Aligned_cols=346 Identities=12% Similarity=0.072 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC------------cH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES------------LV 178 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~ 178 (616)
.|.+--.+.+.|+++.|+..|+...+. .||-.+--.++-.+...|+-++.++.|..++.....+ +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444445567778888888888877764 4676654444444555677888888888777643222 22
Q ss_pred HHHHHHHH-----HHHhcC--CHHHHH----HHHhhcCCCChh---HHH------------------HHHHHHHhCCCcc
Q 007134 179 FVQNSLVH-----MYAAFG--HVKDAC----KVFELMSERDLV---AWN------------------SVINGFASNGKPN 226 (616)
Q Consensus 179 ~~~~~Li~-----~y~~~g--~~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~ 226 (616)
...|.-|. -.-+.. +.+++. ++..-...++-. -|. .-..-|.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 22221111 111111 111111 111111122211 010 1123477889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHH----------------------------------HHhcCchHHHHHHHHHH
Q 007134 227 EALTLFREMASEGVEPDGYTMVSL--FSA----------------------------------CAELGALALGRRAHTYV 270 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~l--l~a----------------------------------~~~~~~~~~a~~~~~~~ 270 (616)
.|+++++-+....-+.-+..-+.+ +.- ....|+++.|...+.+.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 998888877654322211111111 111 11235666666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 271 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
....-......|| +.-.|-+.|++++|+..|-.+. ..++...-.+...|-...+..+|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 5543222233333 2223556677777777776553 335555555666677777777777777655442 3334566
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGAC-TI 425 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~-~~ 425 (616)
.+.|...|-+.|+-.+|.+.+-.--+ -++-++.+..-|..-|....-+++|+.+|++.. +.|+..-|..++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 77777888888888888877654432 344567777778888888888899999998874 889999999988876 78
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
.|++++|.++++.....-|.+......|..+....|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999998899988888888888877664
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=6.1e-11 Score=122.43 Aligned_cols=286 Identities=13% Similarity=0.007 Sum_probs=176.0
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHH--HHHHHHHHhcCCHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ--NSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~y~~~g~~~~A~ 198 (616)
.|++++|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666554431111 112322334446777788888887777664 3443222 23356777778888888
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC
Q 007134 199 KVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275 (616)
Q Consensus 199 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 275 (616)
+.+++..+ .+......+...|.+.|++++|++++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 87777654 24556777777788888888888888888776543221 1110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 352 (616)
.++..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+. .||... .++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 0111122222222334444455554432 36666777777777888888888888777663 344321 123
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~ 431 (616)
.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+..++..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334557788888888777763 3334556777788888888888888888776 467888777788888888888888
Q ss_pred HHHHHHHHHhcC
Q 007134 432 AEIARSTLLQLE 443 (616)
Q Consensus 432 a~~~~~~~~~~~ 443 (616)
|.+.+++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 888888876543
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.5e-11 Score=115.16 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=170.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
.|+.-.+..-++.+++.... +...|--+..+|....+-++..+.|+.... .|..+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876533 233366667789999999999999998764 36778888888888889999999999
Q ss_pred HHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 007134 334 KEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP 411 (616)
Q Consensus 334 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 411 (616)
++.+. +.|+ ...|..+--+..+.+.+++++..|++.++ .++.-...|+-....+...+++++|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99987 4454 46777777777889999999999999998 55556889999999999999999999999765 3444
Q ss_pred c---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 412 N---------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 412 d---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+ +.+-.+++-.-.+ +++..|..+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 2233333333333 899999999999999999999999999999999999999999998764
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=7.9e-12 Score=127.20 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=178.3
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG--LSDNVNVNNALLDFYSKCGIIIA-AQR 300 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~ 300 (616)
+.++|+..|.+... .+.-......-+..+|..++++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45778888887433 234444566667788888888888888888887643 23356666666544332211111 122
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC
Q 007134 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379 (616)
Q Consensus 301 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 379 (616)
+. .+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.... .
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 22 22234678899999999999999999999998887 456 567777777777778888889888887764 5
Q ss_pred ChhhHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 380 KIEHFGC---MVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 380 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
|..+|++ +.-.|.+.++++.|+-.|++. .+.| +.++...+...+.+.|+.++|++++++++.++|.++-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5555554 556788999999999888777 4777 6677777888888889999999999999999999888888888
Q ss_pred HHhHhcccchHHHHHHHHHhh
Q 007134 455 NLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 888889999999999988876
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=6.9e-11 Score=122.04 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=198.7
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHHH
Q 007134 191 FGHVKDACKVFELMSER--D-LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV--SLFSACAELGALALGRR 265 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 265 (616)
.|+++.|++.+...++. + ...|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 1 222333334446788888888888888663 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHH
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA-----------VSWSTLVVGLAVNGFGKEALELFK 334 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 334 (616)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 55677788888888888888888888888775322 133344444444555667777777
Q ss_pred HHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-c
Q 007134 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-N 412 (616)
Q Consensus 335 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d 412 (616)
.+.+. .+.+......+..++...|+.++|..+++...+. +|+... .++.+....++.+++++.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76442 2446677788889999999999999999988753 344422 2233334569999999999877 3556 5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..+...|...+++++|.+.|+++++.+|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678899999999999999999999999999984 4678999999999999999999986643
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=4.3e-10 Score=116.79 Aligned_cols=288 Identities=14% Similarity=0.005 Sum_probs=165.2
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 120 ESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 120 ~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467788888777766553 344332 33334556666777777777777765432222234444566677777777777
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 199 KVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS-LFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 199 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
+.++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+. ..+.. -..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~-------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAE-------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH--------------------
Confidence 77777654 2445666777777777777777777777776653322 22211 11110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH---
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF--- 348 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--- 348 (616)
..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 233 --------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 233 --------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111122333334444432 36667777777778888888888888877764 3333211
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCcHHHHHHHHHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN--M-LMPPNAVIWRTLLGACTI 425 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~pd~~~~~~ll~a~~~ 425 (616)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122334666677777766665332222224455666777777777777777773 2 356776666677777777
Q ss_pred cCCcHHHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTLL 440 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~ 440 (616)
.|+.++|.+++++.+
T Consensus 383 ~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 383 AGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777777653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.2e-10 Score=107.42 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=167.0
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCC
Q 007134 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGK 224 (616)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~ 224 (616)
.++-.....+++.+-.......|++.+...-+....++-...++|+|+.+|+++.+. |..+|..++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 444455566666666666666777666666666666666677777777777777653 344555444 233322
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
.+ +.++.+-.-.=-+--..|...+.+-|+-.++.+.|...|...++.+ +....+|+.+..-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 21 1111111110012223456666666666777777777777777665 44556677777777777777777777766
Q ss_pred cCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 305 MRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 305 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
..+ +|-..|-.|.++|.-.+.+.-|+-.|++.... +| |...+.+|..+|.+.+++++|++.|..... .-..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccc
Confidence 543 35666777777777777777777777776663 33 456677777777777777777777777665 22234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-------L-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
...+..|.++|-+.++.++|...|++- + +.|.. ..-.-|..-+.+.+++++|.....+...
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 456667777777777777776666433 1 22211 1112234445666666666665555543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.6e-11 Score=123.54 Aligned_cols=275 Identities=11% Similarity=-0.002 Sum_probs=166.4
Q ss_pred HHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 194 VKDACKVFELMSE--RDLV-AWNSVINGFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 194 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
..+|...|...++ .|+. ....+..+|...+++++|.++|+...+.. ..-+...|+++|--+-+ +-+...+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3556666666443 2222 22344566666666666666666665432 11244555555543311 11111221
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
+-.-.-.+..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.|..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 1111112445677777777777777777777777776643 345566666666667777777777776654 33332
Q ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHH
Q 007134 346 -VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLG 421 (616)
Q Consensus 346 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~ 421 (616)
..|-.+...|.+.+.++.|+-.|+.+. .+.|. .+...++...+.+.|+.++|++++++.- ..| |+..----+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 345556667777777777777777765 34454 5555566667777777777777777662 334 4444334445
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.+...+++++|...++++.++-|++...|..++.+|.+.|+.+.|..-|..+.+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 56667777777777777777777777777777777877777777777777776544
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=1.9e-12 Score=127.55 Aligned_cols=256 Identities=17% Similarity=0.120 Sum_probs=92.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL-LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+...+.+.|++++|++++++-.....+|+...|-.+ ...+...++.+.|.+.++.++..+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566677777777777544333223444444333 334445667777777777776654 2245556666666 5777
Q ss_pred CHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 193 HVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 193 ~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|......+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777765532 455566777777777788888888877765432 344556666677777777888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH
Q 007134 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (616)
+++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 77764 4456677777888888888777666665543 3466677788888888888888888888877632 23556
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
....+..++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 666777778888888888777766543
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=3.8e-10 Score=117.17 Aligned_cols=279 Identities=11% Similarity=0.049 Sum_probs=176.3
Q ss_pred CCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHcCCCcHHHH
Q 007134 89 LSFPMSYAHNIFSHVQD--PN-IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 89 ~~~~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~ 163 (616)
.| +++.|++.+.+..+ |+ ...+-.....+.+.|+++.|.+.|.+..+. .|+.. ........+...|+++.|.
T Consensus 97 ~g-~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EG-DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45 89999999987664 33 233444456677889999999999998764 35553 3333477788899999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH----HHHHHhCCCccHHHHHHHHHH
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSV----INGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 236 (616)
+.++.+.+.. +.+..+...+..+|.+.|++++|.+.++...+. +...+..+ ..++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999986 667788999999999999999999999988754 22222211 111122222222223333333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Chhh--
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--NAVS-- 312 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~-- 312 (616)
... | + ..+.+...+..+...+...|+.++|.+++++..+. |...
T Consensus 253 ~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 253 KNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 221 1 0 01124455555555556666666666666555432 2111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH---HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 313 -WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV---TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 313 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.+.|+.... +...|+...+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHH
Confidence 111112223345667777777766653 34433 344666777788888888888884322 14457777777888
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 007134 389 DLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~ 406 (616)
..+.+.|+.++|.+++++
T Consensus 378 ~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 888888888888888775
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.7e-10 Score=109.43 Aligned_cols=391 Identities=12% Similarity=0.046 Sum_probs=261.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC----CChh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH--
Q 007134 79 GKYLIYAIVSLSFPMSYAHNIFSHVQD----PNIF-TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK-- 151 (616)
Q Consensus 79 ~~~li~~y~~~~~~~~~A~~~f~~m~~----~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-- 151 (616)
...|.+-|.... -..+|+..++-+.. ||.- .--.+-..|.+..++.+|+..|+-.+..-...+..+-..+++
T Consensus 204 l~nlaqqy~~nd-m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEAND-MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhH-HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 344555565555 67788887765543 2221 112344567788889999999987766433333334433443
Q ss_pred --HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------------CChhHHH
Q 007134 152 --AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----------------RDLVAWN 213 (616)
Q Consensus 152 --~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----------------~~~~~~~ 213 (616)
.+.+.|.++.|..-|+++.+. .|+..+.-.|+-.|..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 356889999999999999886 57777766777788889999999999998752 2222233
Q ss_pred HH-----HHHHHhCC--CccHHHHHHHHHHHCCCCCCHH-------------HHH--------HHHHHHHhcCchHHHHH
Q 007134 214 SV-----INGFASNG--KPNEALTLFREMASEGVEPDGY-------------TMV--------SLFSACAELGALALGRR 265 (616)
Q Consensus 214 ~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-------------t~~--------~ll~a~~~~~~~~~a~~ 265 (616)
.- +.-.-+.+ +.++++-.--++..--+.||-. .+. .-..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22 22222221 2233333333333222333321 000 01223567899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH------------------------------------HHhcCCHHHHHHHHHhcCCCC
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDF------------------------------------YSKCGIIIAAQRVFREMRKRN 309 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~------------------------------------y~~~g~~~~A~~~f~~m~~~~ 309 (616)
++....+..-.......|.|-.. ....|++++|.+.|++....|
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 88877654322222222222111 123578888988888888777
Q ss_pred hhhHHHHH---HHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHH
Q 007134 310 AVSWSTLV---VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386 (616)
Q Consensus 310 ~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 386 (616)
...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++-+... -++.|......
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHH
Confidence 66544443 3466789999999999887652 233556677788888889999999999888764 56667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccch
Q 007134 387 MVDLLGRAGLVKQAYEYIQN-MLMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~-m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 464 (616)
|.+.|-+.|+-..|.+..-. ...-| |..+..-|..-|....-.++++..|+++.-+.|+.......++.++.+.|++.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999999887644 34334 77777777777888888899999999998889986555556777888999999
Q ss_pred HHHHHHHHHhh
Q 007134 465 NVQEVRRTMVK 475 (616)
Q Consensus 465 ~a~~~~~~m~~ 475 (616)
.|.++++....
T Consensus 678 ka~d~yk~~hr 688 (840)
T KOG2003|consen 678 KAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-09 Score=104.52 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=186.1
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 294 (616)
.+|....+.+++++-.......|++-+...-+-...+.-...++++|..+|+.+.+... -.|..+|..++-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444456666666666666666554444444444444566677777777777777631 1245556555432222222
Q ss_pred HHH-HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 295 IIA-AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 295 ~~~-A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.- |..++ .+.+-.+.|.-.+..-|+-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+-++.+.
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 221 22222 222223445555667777888999999999999885 4443 567777788999999999999999998
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+ -.+.|-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6 44567899999999999999999999999888 4778 789999999999999999999999999998877777899
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhh
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|+++|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987655
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=4.1e-09 Score=106.91 Aligned_cols=372 Identities=10% Similarity=0.021 Sum_probs=218.6
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHH---
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD--THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN--- 182 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 182 (616)
...|-.=...+-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-++.+|..+++. ++.+..+|.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~ 557 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHH
Confidence 34454444455555555555555555544443321 124555555555555555555555555443 233333333
Q ss_pred -------------------------------HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHH
Q 007134 183 -------------------------------SLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 183 -------------------------------~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 228 (616)
....-+-..|++..|+.++...-+ .+...|-+-+..-..+.++++|
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 333444445555555555554432 1344555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007134 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308 (616)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (616)
..+|.+.... .|+...|.--++.---++..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+.
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665542 344444444444444455666666666665554 2333455556666666666666666666554432
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 385 (616)
.+..|-.+...=-+.|+...|..++++....+ +-|...|...|..=.+.|+.+.|..+..+..+ .++.+...|.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWa 791 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWA 791 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHH
Confidence 34456655555555666666666666665543 22445666666666666777777666666665 3444455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchH
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 465 (616)
.-|-+..+.++-..+.+.+++-. -|..+.-++...+....+++.|..-|.++++.+|++.+++..+-..+...|.-++
T Consensus 792 EaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 66666666666555555555543 3445555666677788899999999999999999999999988889999999988
Q ss_pred HHHHHHHHhhCCCccCCceeeEEeC
Q 007134 466 VQEVRRTMVKERVKKTPGHSLVELG 490 (616)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~s~~~~~ 490 (616)
-.+++++... ..|.-|..|..+.
T Consensus 870 ~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhc--cCCCCCcHHHHHh
Confidence 8888887754 2344455555443
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.36 E-value=4.2e-08 Score=103.63 Aligned_cols=348 Identities=16% Similarity=0.138 Sum_probs=265.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHh---hCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS---HVQDPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~---~m~~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
++.+.|..+...+++.. |.++..|-.|...|-..| +.+++...+- +....|...|..+.....+.|++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 68899999999999987 568889999999999998 9999988774 45556889999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHH----HHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN----SLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
|.+.++.. +++...+-.=...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999864 3444444445667888999999999999998875333333222 345566777877999999887654
Q ss_pred -----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH----------------------HH----HHHHHHHH
Q 007134 207 -----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY----------------------TM----VSLFSACA 255 (616)
Q Consensus 207 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~----~~ll~a~~ 255 (616)
-+...+|.++..|.+..+++.|+.....+......+|.. .| ..+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 244578999999999999999999998887622222211 11 12222345
Q ss_pred hcCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHHcCCHHHH
Q 007134 256 ELGALALGRRAHTYVWKVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR----NAVSWSTLVVGLAVNGFGKEA 329 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A 329 (616)
.+...+....+.....+.. ...++..+.-+.++|...|++.+|.++|..+... +...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 6666777777777777766 4556788899999999999999999999998753 677899999999999999999
Q ss_pred HHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHH-------hhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 007134 330 LELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKD-------EYGIMPKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 330 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-------~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
++.|...... .|+. ..-..|-..+.+.|+.++|.+.+..+.. ..+..|+...-....+.|.+.|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999874 4554 3444556667889999999999998531 1244555556666778889999988755
Q ss_pred HHHHhC
Q 007134 402 EYIQNM 407 (616)
Q Consensus 402 ~~~~~m 407 (616)
+....|
T Consensus 547 ~t~~~L 552 (895)
T KOG2076|consen 547 NTASTL 552 (895)
T ss_pred HHHHHH
Confidence 544443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.2e-09 Score=100.31 Aligned_cols=217 Identities=14% Similarity=0.089 Sum_probs=147.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCCHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES---LVFVQNSLVHMYAAFGHVKDA 197 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 197 (616)
+.++++|+++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|+.+.++.--+ -..+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 367888999999988742 1222344567777888899999999999888753111 133556688889999999999
Q ss_pred HHHHhhcCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHH
Q 007134 198 CKVFELMSERD---LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY----TMVSLFSACAELGALALGRRAHTYV 270 (616)
Q Consensus 198 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~ 270 (616)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+ -|--+........+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999987633 3456778999999999999999999998876555443 2333344444455667777777766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV----SWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 271 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
.+.+ +..+...-.+.+.+...|+++.|.+.++.+.+.|.. +-..|..+|.+.|+.++....+.++.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6553 233444445566666667777777776666655432 3455566666666666666666666654
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=7.9e-08 Score=94.30 Aligned_cols=410 Identities=10% Similarity=0.037 Sum_probs=264.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCchHHHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNI-FTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
+...|+.|+..++.... .+..+|-..+.+=-++. .+..|+.+|+.... |-+ ..|-.-+-.=-..|+...|.++|
T Consensus 88 e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDY--RNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45567777777776553 45667777777777777 78888888876432 222 24444444444567888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C--
Q 007134 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-- 207 (616)
Q Consensus 132 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-- 207 (616)
++-.. ..|+...|.+.++.=.+.+..+.|+.+++..+-. .|++..|---...=.++|.+..|..+|+...+ .
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 77765 5788888888888877888888888888877653 47777777777777778888888888876653 1
Q ss_pred --ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHH--------HHHHHHHhCC
Q 007134 208 --DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACAELGALALGRR--------AHTYVWKVGL 275 (616)
Q Consensus 208 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~--------~~~~~~~~g~ 275 (616)
+...+++...-=.++..++.|--+|+-.++. ++-+ ...|.....-=-+-|+...... -++..++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 2223344333334456667777777666554 2222 2233322222223343322221 122333332
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHH--------HHHHcCCHHHHHHHHHHHHhCCCc
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVV--------GLAVNGFGKEALELFKEMEIGGFV 342 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~ 342 (616)
+.|-.+|--.++.-...|+.+...++|++.... .-..|..-|- .=....+.+.+.++|+...+. ++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 456667777777777788888888888876531 1112322221 112356788888888888772 33
Q ss_pred CCHHHHHHHHHHHh----cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 343 PGEVTFVGVLYACS----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 343 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
-..+||.-+--.++ ++.++..|.+++.... |.-|...++...|..=.+.+.++....++++. ...| |-.+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 34577765544443 5778888888888876 77788888888888888888899988888776 4667 66888
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--chhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSG--DYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
......-...|+.+.|..+|+.++....-+.. .+-..++.-...|.++.|..+++.+.++.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 88888888889999999999888753221111 11233333357888999999998887754
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=2.3e-07 Score=94.60 Aligned_cols=397 Identities=12% Similarity=0.004 Sum_probs=255.0
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007134 60 KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 60 ~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
+.|....++.- |.++.+|.+.+. .. +.++|+.++.+..+ .+...|.+ |++..-++.|..+++...+
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAVe----lE-~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAVE----LE-EPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHHh----cc-ChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 44555555433 566666666553 33 56667777765443 24444543 3444556777777777765
Q ss_pred CCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC------
Q 007134 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI----RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE------ 206 (616)
Q Consensus 137 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------ 206 (616)
. ++-+...|.+....=-..|+.+....+.+..+ ..|+..+..-|-.=...+-+.|.+-.+..+......
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 55666677666666666677777776665543 456666666666666667777777766666665532
Q ss_pred CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007134 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286 (616)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (616)
.--.+|+.-...|.+.+.++-|..+|...++- .+-+...|......=-..|..+.-..++.+++... +-....+-...
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHH
Confidence 12346777777777777777777777776653 23344455555555555677777777777777653 33444555556
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
.-+-..|++..|+.++...-+. +...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---.++.++
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 6666677777777777766432 4456777777777777788888887777663 3455444444444445677778
Q ss_pred HHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|.+++++..+.| |+ ...|-.+...+.+.++++.|.+.|..- ..-|+ ...|..|...--+.|.+..|..++++..
T Consensus 670 A~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 887777776633 44 556777777777777777777777544 33453 4577777666677777777888887777
Q ss_pred hcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 441 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
-.+|++...|...+.+-.+.|+.+.|..+..+..+
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777766655543
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=8.4e-08 Score=94.12 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=288.0
Q ss_pred hCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 164 (616)
..+ ++..|+.+|+... .++...|-.-+..=.++.+...|..++++....-+..|..-|. -+-.=-..|++..|++
T Consensus 85 sq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence 455 7889999999765 4788889999999999999999999999998743333433222 2223345689999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 242 (616)
+|+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|+...|..+|....+. -.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 9998877 58999999999999999999999999999864 699999998888888999999999999887653 12
Q ss_pred CHHHHHHHHHHH----HhcCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC
Q 007134 243 DGYTMVSLFSAC----AELGALALGRRAHTYVWKVGLSDN--VNVNNALLDFYSKCGIIIAAQRV--------FREMRKR 308 (616)
Q Consensus 243 ~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------f~~m~~~ 308 (616)
|...-..+..++ .....++.|.-+|...++.- +.+ ...|..++..=-+-|+....... |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 232223333333 45567888999999888763 333 45566666555556664443332 2333333
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-------HHHHHHHHH---hcCCChHHHHHHHHHhHHhh
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-------TFVGVLYAC---SHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~ 375 (616)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=-+| ....+++.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 5667777777777889999999999999875 555321 122211122 247899999999999886
Q ss_pred CCCCChhhHHHHHHH----HHhcCCHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 376 GIMPKIEHFGCMVDL----LGRAGLVKQAYEYIQN-MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 376 ~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~-m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
-++-...++.-+=-+ ..++.++..|.+++.. +|.-|-..+|...|..-.+.++++....++++.++..|.+..++
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 455556666554444 4578999999999955 47889999999999999999999999999999999999998888
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
.-.+.+-...|+++.|..+|........
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 8888888899999999999998877654
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.9e-12 Score=88.04 Aligned_cols=50 Identities=38% Similarity=0.736 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 155 (616)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=2.2e-07 Score=94.61 Aligned_cols=250 Identities=13% Similarity=0.085 Sum_probs=149.5
Q ss_pred CCccHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 007134 223 GKPNEALTLFREMASEGVEPD------GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN---VNVNNALLDFYSKCG 293 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 293 (616)
|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++.|+.+|++..+..++.- ..+|..-.++=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555666665543 3332 23456667777788888888888888777654322 345555556666666
Q ss_pred CHHHHHHHHHhcCC---C------------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------
Q 007134 294 IIIAAQRVFREMRK---R------------------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGG------------ 340 (616)
Q Consensus 294 ~~~~A~~~f~~m~~---~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 340 (616)
+++.|+++.+.... + ....|...+..--..|-++....+++++.+..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777777665431 1 12233333332223333333333333333321
Q ss_pred ----------------------CcCCH-HHHHHHHHHHh---cCCChHHHHHHHHHhHHhhCCCCCh--hhHHHHHHHHH
Q 007134 341 ----------------------FVPGE-VTFVGVLYACS---HCGMVDEGFSYFKRMKDEYGIMPKI--EHFGCMVDLLG 392 (616)
Q Consensus 341 ----------------------~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~ 392 (616)
-.|+. ..|+..|.-+. ....++.|..+|++..+ +.+|.. ..|-.....=.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence 12333 22333333222 24568999999999988 777662 22333334445
Q ss_pred hcCCHHHHHHHHHhCC--CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc--hhhhhHHhHhcccchHH
Q 007134 393 RAGLVKQAYEYIQNML--MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD--YVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~--~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~y~~~g~~~~a 466 (616)
+.|....|+.++++.. +++. ...|+..|.--...=-+..-..+++++++.-|++..- ..-.+++-.+.|.++.|
T Consensus 598 e~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 6788999999999884 5553 2588888875554444667788999998887774222 23456677889999999
Q ss_pred HHHHHHHhh
Q 007134 467 QEVRRTMVK 475 (616)
Q Consensus 467 ~~~~~~m~~ 475 (616)
+.++..-.+
T Consensus 678 RaIya~~sq 686 (835)
T KOG2047|consen 678 RAIYAHGSQ 686 (835)
T ss_pred HHHHHhhhh
Confidence 999976544
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.8e-08 Score=99.74 Aligned_cols=393 Identities=12% Similarity=0.024 Sum_probs=272.0
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHh--hCCCCChhHHHHHHHHHHhcCCchHHHHHHH----HHHHC---------C
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFS--HVQDPNIFTWNTMIRGYAESANPLLAVELYS----KMHVS---------G 138 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~--~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~---------g 138 (616)
.+|.-.--+.++|.-.+ .++.|..+.. .+...|..+.......+.+..++++|+.++. .+... -
T Consensus 47 ~dp~d~~~~aq~l~~~~-~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGR-QYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34544456777887776 8888888775 5667899999999999999999999999987 32110 0
Q ss_pred CCCCcch----HHHHH-------HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-----------------h
Q 007134 139 IKPDTHT----YPFLL-------KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-----------------A 190 (616)
Q Consensus 139 ~~pd~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-----------------~ 190 (616)
+.+|..- -+.-. +.+....+.++|+..+.+++....... ..+-.|+.... -
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 1122111 00111 234445567778877777765432211 11111111110 0
Q ss_pred c-CCHHHHHHHHhhc----CC----------------CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 007134 191 F-GHVKDACKVFELM----SE----------------RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249 (616)
Q Consensus 191 ~-g~~~~A~~~f~~~----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 249 (616)
+ .+.+.-+.+|+-. .+ .++...-.-..-+...+++++.+++++...+.. ++....+..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 0 1112222233211 00 123333344455677899999999999987763 555555555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~ 326 (616)
-|..+...|+..+-..+-..+++. .|....+|-++.--|.-.|+.++|++.|.+...-| ...|-.....|+-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 666778888777666666666665 46678889999988999999999999998866443 46899999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
++|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++.| |....+-+.-.....+.+.+|..+|+
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999998876552 11111122334445788999999999999886 5545 46677777777778899999999997
Q ss_pred hCC--------CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 406 NML--------MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 406 ~m~--------~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
... -++ -..+++.|..+|++.+.+++|+..+++++.+.|.++++|..++-+|...|+++.|.+.|.+..
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 652 112 345788999999999999999999999999999999999999999999999999999998764
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=2.1e-08 Score=96.75 Aligned_cols=294 Identities=14% Similarity=0.077 Sum_probs=195.1
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 112 NTMIRGYAE--SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 112 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
..+..+..+ .|++.+|.++..+-.+.+-.|- ..|.....+.-..||.+.+-+++.++.+..-.++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345555544 6999999999988776653332 3455666777888999999999999988754677778888888899
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 190 AFGHVKDACKVFELMS---ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
..|+++.|..-.++.. .++.........+|.+.|++.+...++.+|.+.|+--|...- ++
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH
Confidence 9999999988777654 367788888999999999999999999999988865443211 00
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 112333333333333333333344444442 245555666677777777778877777777766666
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGA 422 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a 422 (616)
+.. .+-.+.+.++...-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..+
T Consensus 297 ~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 297 RLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred hHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 522 22245566666666666666655444444 45556666666777777776666644 456666667666667
Q ss_pred HHHcCCcHHHHHHHHHHH
Q 007134 423 CTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~ 440 (616)
+.+.|+.++|.+..++.+
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 777777776666666654
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.1e-11 Score=84.84 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.7e-09 Score=103.11 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=152.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666677778888888888888877643 245677778888888888888888888887653 2344566667777
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+...|++++|...|+...+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88888999999888888763222233556777888889999999999999776 2344 456788888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888787777777888889999999999998887754
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=4.8e-09 Score=108.18 Aligned_cols=231 Identities=18% Similarity=0.119 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKV-----GL-SDNV-NVNNALLDFYSKCGIIIAAQRVFREMRK-------R- 308 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 308 (616)
..|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666788888888888888888877654 21 2222 2234467788889999998888887652 1
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCc-CCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhC--
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEI-----GGFV-PGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-- 376 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 376 (616)
-..+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 245678888889999998888887776543 1222 222 3356667788899999999999988776544
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-
Q 007134 377 IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML---------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ- 441 (616)
Q Consensus 377 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~- 441 (616)
..++ ..+++.|...|...|++++|.+++++.- ..+. ...++.|..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4578999999999999999999998761 2232 46778889999999999999999988743
Q ss_pred ---cCCCCC---CchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 442 ---LEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 442 ---~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+|+++ .+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455544 347789999999999999999988765
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.4e-08 Score=97.83 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=198.0
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 007134 191 FGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 267 (616)
.|++..|++...+-.+ ..+..|..-+.+--+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5788888887776443 2344555555667777888888888887766433444455555566667778888888877
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-----------AVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
..+.+.+ +.+..+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777765 5567777888888888888888888888887642 246777777666666666555566665
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh----CCCCCc
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN----MLMPPN 412 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~pd 412 (616)
-.. .+-+...-.+++.-+.++|+.++|.++..+..+. +..|+.. .+ -...+-++...-++..++ .+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 432 3444555667777888999999999999888775 6666622 11 223455555554444433 343 4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+..+.+|..-|.+++.+.+|...++.+++..|. ...|..++.++.+.|+.++|.+.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 478999999999999999999999999999987 7789999999999999999999998765
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=5.4e-08 Score=91.19 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=132.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh------hHHHHHHHHHHhCCCccHH
Q 007134 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDL------VAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A 228 (616)
.++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-..+.+ ||. .+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 367788888888888743 44556777888899999999999998887765 332 2344566778888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN----VNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
.++|..+.+.+ ..-......++..|-...++++|..+-.++.+.+-.+. ...|.-|...+.-..+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 22334566677777777888888887777777653332 12233334444444555555555555
Q ss_pred cCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 305 MRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 305 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..+. .+..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4432 22222233444555555555555555555543222223344455555555555555555555443
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.2e-08 Score=110.05 Aligned_cols=260 Identities=12% Similarity=0.045 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHh-----CCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Q 007134 208 DLVAWNSVINGFAS-----NGKPNEALTLFREMASEGVEPDG-YTMVSLFSACAE---------LGALALGRRAHTYVWK 272 (616)
Q Consensus 208 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---------~~~~~~a~~~~~~~~~ 272 (616)
+..+|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 13357899999999875 4543 345444444332 2347899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-HH
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-TF 348 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 348 (616)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 55778888888999999999999999998764 3 4567888999999999999999999999885 44432 23
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA-VIWRTLLGACTI 425 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~-~~~~~ll~a~~~ 425 (616)
..++..+...|++++|...++++.+. .+|+ ...+..+...|...|+.++|...++++. ..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998753 2343 5557778888999999999999998873 45544 455556566677
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.| +.|...++++++..-..+..+..+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788878777654333333444477788888888888777 7776543
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.9e-07 Score=87.46 Aligned_cols=362 Identities=11% Similarity=-0.016 Sum_probs=241.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCCCChhHH-HHHHHHHHhcC-CchHH--------------HHHHHHHHHCC-----
Q 007134 80 KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW-NTMIRGYAESA-NPLLA--------------VELYSKMHVSG----- 138 (616)
Q Consensus 80 ~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g----- 138 (616)
-..+..|...+ +-++|.......|..-...- |.|+.-+-+.| +..++ +..+.-..+.+
T Consensus 101 r~~aecy~~~~-n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 101 RRAAECYRQIG-NTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHc-cchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 34566666666 78888888888876433333 33443333333 21122 12222222222
Q ss_pred ----------CCCCcchHHHHHHHHHc--CCCcHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 139 ----------IKPDTHTYPFLLKAISK--LADVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 139 ----------~~pd~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
+.|+..+...-+.+++. .++-..+.+.+-.+.+. -++.|+....++.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 23444444444555443 34444455555444433 367788899999999999999999999999876
Q ss_pred CCChhHHHHH---HHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHH
Q 007134 206 ERDLVAWNSV---INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282 (616)
Q Consensus 206 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 282 (616)
.-|..+...| .--+.+.|+++....+...+.... +-....|..-+.......+++.|..+-++.++.. +.++..+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5444333332 233457888888888777775432 1222333333344456677888888877777654 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH-HHHh-c
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMR--K-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL-YACS-H 357 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~ 357 (616)
-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|++.+|..+-+..... +..+..+...+. ..|. .
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 555567778899999999998765 3 37889999999999999999999887776543 233444444332 2222 2
Q ss_pred CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
...-++|..+++.-. .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|...++..+.+++|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 344578888888765 55677 666778888999999999999999876 4778999999999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 007134 436 RSTLLQLEPKHSG 448 (616)
Q Consensus 436 ~~~~~~~~p~~~~ 448 (616)
|..++.++|++..
T Consensus 494 y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 494 YYKALRQDPKSKR 506 (564)
T ss_pred HHHHHhcCccchH
Confidence 9999999998543
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.13 E-value=1.4e-09 Score=113.88 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=187.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 007134 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309 (616)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 309 (616)
.++-.+...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-...+.+..+++.++......|+.+.+. .+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678889999999999999999999999999999 9999988888889999999999999999887766 677
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..+|+.|..+|..+|+... ++..++ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333333 122233344555555555555544322223445543 4556
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH-SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
.+.-.|.++.++++...+|...-......++.-+..... +++-....+...+ .|+ +.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 677788899999999988733211111113555544443 3333333333333 454 7788888888889999999999
Q ss_pred HHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccc
Q 007134 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535 (616)
Q Consensus 469 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~ 535 (616)
+...|+++|+.-.+.+.|..+-+ ... ...++...+-|.+.|+.|+.++...-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999998888777765433 111 12334445678899999999876443
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=1.9e-08 Score=95.77 Aligned_cols=192 Identities=15% Similarity=0.037 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
...+..+...|...|++++|++.|++..+.. +.+...+..+...+...|+++.|.+.++..++.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 1123344445555555666666666666655543 3334455555666
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 007134 188 YAAFGHVKDACKVFELMSE-----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (616)
|...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665532 122344445555566666666666666555432 1223344444455555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
|...++...+. .+.+...+..+...+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555554443 12233333344444444444444444443
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.12 E-value=9.6e-09 Score=107.76 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSL 184 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 184 (616)
.||.+||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 356677777777777777776666 6666666656666666766666666666665554 4556677777
Q ss_pred HHHHHhcCCHHH---HHHHHhhcCC-------CChhHH---------------HHHHHHHHhCCCccHHHHHHHHHHHCC
Q 007134 185 VHMYAAFGHVKD---ACKVFELMSE-------RDLVAW---------------NSVINGFASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 185 i~~y~~~g~~~~---A~~~f~~~~~-------~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (616)
..+|...||+.. .++.++.+.. ....-| ...|.-....|.++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777777776544 2221111110 000001 111222233334444444443332111
Q ss_pred -CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHH
Q 007134 240 -VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR----NAVSWS 314 (616)
Q Consensus 240 -~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~ 314 (616)
..| +..+++-+.. ...-.+++........-.++..++.++++.-...|+++.|..++.+|.++ +..-|-
T Consensus 170 ~~~p----~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WNAP----FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccch----HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 011 1112322222 12223333333322211466667777777777777777777777777654 222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.|+-+ .+....+..+.+-|++.|+.|+..|+...+..|...|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 33332 56666666666667777777777776666666655443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=5.2e-08 Score=105.25 Aligned_cols=239 Identities=12% Similarity=-0.022 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCcc
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---------AFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 226 (616)
+++|.+.++++++.. +.+...+..+..+|. ..+++++|...+++..+ .+..+|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 345555555555442 222333443433332 12335566666655543 23445555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
+|+..|++..+.+ +.+...+..+..++...|++++|...++.+.+.... +...+..++..+...|++++|...+++..
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6666666665543 223344555555566666666666666666554311 22222223333444566666666666553
Q ss_pred C---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHH-HHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh
Q 007134 307 K---R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV-GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381 (616)
Q Consensus 307 ~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 381 (616)
. + +...+..+...+...|+.++|...+.++... .|+..+.. .+...+...| +.|...++.+.+.....+.-
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 1 2 2334555556666666666666666665442 33333322 2223344444 35555555555433333333
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..+..+ .|.-.|+-+.+..+ +++
T Consensus 510 ~~~~~~--~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 510 PGLLPL--VLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred chHHHH--HHHHHhhhHHHHHH-HHh
Confidence 333233 23344554444444 444
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.9e-07 Score=90.87 Aligned_cols=218 Identities=13% Similarity=0.037 Sum_probs=170.1
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+.-.|+...|...|+..+.....++.. |.-+..+|.+..+.++..+.|..+.+.+ +.+..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345688999999999998875444432 7777888999999999999999999876 55677777778888888999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 299 QRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
..=|++...- ++..|--+..+.-+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988754 4556666666667788999999999999875 344456788888889999999999999998874
Q ss_pred CCCCC-------hh--hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 376 GIMPK-------IE--HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 376 ~~~p~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
+.|+ .. +--+++. +.-.+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 11 1112221 22348999999999877 4667 45789999999999999999999999986553
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=5e-07 Score=94.10 Aligned_cols=395 Identities=15% Similarity=0.046 Sum_probs=259.3
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHH
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFL 149 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~l 149 (616)
.++.+|-.|.-+...+| +++.+-+.|+.... .....|+.+...|...|....|+.+++.-......|+..+ +-..
T Consensus 321 nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 68899999999999999 99999999997542 3556899999999999999999999987765433354444 3333
Q ss_pred HHHHH-cCCCcHHHHHHHHHHHHh--CC--CCcHHHHHHHHHHHHhcC-----------CHHHHHHHHhhcCCC---Chh
Q 007134 150 LKAIS-KLADVRMGEQTHSVAIRN--GF--ESLVFVQNSLVHMYAAFG-----------HVKDACKVFELMSER---DLV 210 (616)
Q Consensus 150 l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~~---~~~ 210 (616)
-+.|. +.+..+++..+-.+++.. +. ......|-.+.-+|...- .-.++.+.+++..+. |..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 44454 446777777777777662 21 222345555555554331 234566677766432 222
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hCCCCchhHHHHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFY 289 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y 289 (616)
+.--+.--|+-.++.+.|++..++..+-+-.-+...|..+.-.++..+++..|..+.+.... .|.... ....-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hchhhhhhh
Confidence 22223344667788999999999998886677888888888888888999999998877654 232111 001111111
Q ss_pred HhcCCHHHHHHHHHhc--------------------------C-----CCChh-hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 290 SKCGIIIAAQRVFREM--------------------------R-----KRNAV-SWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m--------------------------~-----~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
...|+.++|......+ . ..+.. ++..+ .+.+. -+.+.+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cC
Confidence 1233444433322211 1 01111 22211 11111 11111100000 22
Q ss_pred hCCCc--CCH------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 007134 338 IGGFV--PGE------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-L 408 (616)
Q Consensus 338 ~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 408 (616)
..-+. |+. ..+......+.+.+..++|...+.+..+ ..+-....|.-....+...|.+++|.+.|... -
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11122 232 2234455667788999999888877764 23334667777778889999999999988766 5
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 409 MPPN-AVIWRTLLGACTIHGHSAIAEI--ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 409 ~~pd-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+.|| +.+..++...+.+.|+...|.. +...+++++|.++.+|..++.++.+.|+.++|.+-|+...+.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7885 5788999999999999888888 999999999999999999999999999999999999888664
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.3e-09 Score=97.72 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=181.2
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+..+++.|..++.+-++. ++.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999988876 566678888899999999999999999888775 466777777788888899
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 007134 293 GIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369 (616)
Q Consensus 293 g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 369 (616)
++.++|.++|+...+. |+.+..++..+|.-.++++-|+..|+++...|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988653 6677777788889999999999999999998865 55677788878888888888887777
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 370 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
+.... .-.|+ +| ..+|..|.......||+..|.+.|+.++..+|++..+
T Consensus 383 RAlst-at~~~------------------~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------QA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------hh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 76542 11122 11 2355555555566778888888888888888888888
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++.|+-+-.+.|++++|..+++.....
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888777553
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2e-07 Score=93.69 Aligned_cols=278 Identities=14% Similarity=0.059 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
...+..+.....+-+...+++.+..++++...+. ....+..-|..+...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666777778888899999999999988764 4456667788999999999888888888875 34566799999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (616)
.--|-..|..++|++.+.+..... +.-...|-+....|+-.|..+.|...+....+ ..-..+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888888999999999999876643 22345677788889999999998887765432 11112222445577889999
Q ss_pred HHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-CCC----CChhhHHHHHHHHHhcCCHHHHH
Q 007134 328 EALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIM----PKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
.|.+.|.+... +-|+ ....+-+.-...+.+.+.+|..+|+.....- .+. ....+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998876 4554 4555555555566889999999999886310 111 13446788899999999999999
Q ss_pred HHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 402 EYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 402 ~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
..+++.- ..| |..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9998873 445 88899999999999999999999999999999997655444443
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=6.3e-08 Score=100.06 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHhCCCccHHHHHHHHHHHCC---CCCC
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSER----------DLV-AWNSVINGFASNGKPNEALTLFREMASEG---VEPD 243 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 243 (616)
..+...|..+|...|+++.|+.+|....+. .+. .-+.+...|...+++++|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566888888888888888888765321 111 12234445555666666666665553210 0011
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-h
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK----------RNAV-S 312 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~~~~-~ 312 (616)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+. .
T Consensus 279 -------------------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 -------------------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred -------------------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 111123344444555555655555555444321 1222 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhh----C-CCCC
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIG---GFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEY----G-IMPK 380 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~ 380 (616)
.+.++..+...+++++|..++++..+. -+.++. .+++.+...+.+.|++++|.++|+++.... + ..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 455566677777788877777765431 122222 567778888888888888888888876542 1 1122
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 381 -IEHFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 381 -~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
..+++.|...|.+.++..+|.++|.+. +..|+. .+|..|...|...|+++.|.++.+++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456677888888888888888888654 244554 689999999999999999999999885
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=6.5e-08 Score=95.68 Aligned_cols=210 Identities=14% Similarity=0.050 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 259 ALALGRRAHTYVWKVG-LSD--NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 222 235566777778888888888888877653 3567788888888888888888888
Q ss_pred HHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 007134 333 FKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--M 409 (616)
Q Consensus 333 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 409 (616)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.. .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888763 454 456667777777888888888888887653 3442212222223445677888888885542 2
Q ss_pred CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH-------hcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLL-------QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|+...| .......|+...+ ..++.+. ++.|+.+..|..++.+|.+.|++++|...+++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 2223345555443 2333332 4455556678888888888888888888888876543
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.7e-07 Score=91.32 Aligned_cols=215 Identities=13% Similarity=0.027 Sum_probs=138.5
Q ss_pred CCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 223 GKPNEALTLFREMASEG-VEPD--GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665432 1222 2345555556667777777777777776654 445677888888888888888888
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC
Q 007134 300 RVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376 (616)
Q Consensus 300 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 376 (616)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887753 2 4567788888888889999999999888774 45433222222234456788999998876554 3
Q ss_pred CCCChhhHHHHHHHHHhcCCHH--HHHHHHHhC-C----CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 377 IMPKIEHFGCMVDLLGRAGLVK--QAYEYIQNM-L----MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 377 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~----~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..|+...+ .++.. ..|+.. ++.+.+.+- . ..| ....|..+...+...|++++|+..|+++++.+|.
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 33433222 23333 344443 333333221 1 122 2358899999999999999999999999999974
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.2e-07 Score=88.91 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM-VSLFSA 253 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 253 (616)
|-+--+.+...|.+.|.+.+|++-|+...+ +-+.||-.|-..|.+..+++.|+.+|.+-++. .|-.+|| ..+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444567899999999999999999987654 67789999999999999999999999988764 5666666 456677
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+...++.+++.+++....+.. +.++....++...|.-.++.+-|+..|+++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 888999999999999998874 55677777777888889999999999998764 57888999999999999999999
Q ss_pred HHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 331 ELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.-|++....--.|+. ..|-.+.......|+...|.+.|+-... .-......++.|.-.-.+.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999998765444544 3455566666678888888888887765 23334667777777777888888887777665
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.7e-06 Score=84.47 Aligned_cols=369 Identities=13% Similarity=0.084 Sum_probs=229.3
Q ss_pred hCCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHcCCCcHHHH
Q 007134 88 SLSFPMSYAHNIFSHV---QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-HTYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~ 163 (616)
..| +++.|...|... ..+|-+.|+.-..+|+..|++++|++=-.+-.+ +.|+- ..|+....++...|++++|.
T Consensus 14 s~~-d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSG-DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccc-cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHH
Confidence 445 788888888642 345777888888888888888888766555554 45664 36777788888888888888
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh------cCC-C------ChhHHHHHHHHHHhC--------
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL------MSE-R------DLVAWNSVINGFASN-------- 222 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~------~~~-~------~~~~~~~li~~~~~~-------- 222 (616)
.-|..-++.. +.+...++-|.+++... . .+.+.|.. ... | ....|..++..+-++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 8888777763 55666777777776111 0 11111111 000 0 111233333322221
Q ss_pred --CCccHHHHHHHH-----HHHC-------CCCC------------C----------HHHHHHHHHHHHhcCchHHHHHH
Q 007134 223 --GKPNEALTLFRE-----MASE-------GVEP------------D----------GYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 223 --g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
.+...|+-.+.. +... +..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 001111111100 0000 1111 0 11234456666666777778777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV----------SWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+...+... .++..++....+|...|.+......-+...+..-. +...+..+|.+.++++.|+..|++.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77777664 56666677777888887777666555544332111 1222344666677888888888886
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cH
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE-HFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NA 413 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~ 413 (616)
...-..||..+ +....+++....+... -+.|... --..-...+.+.|++.+|+..+.++. ..| |.
T Consensus 325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 66544554321 2233344444333332 2334421 11122566789999999999998873 556 67
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..|.....+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+++..+.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999988889988888989999999999999877643
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=3.2e-05 Score=79.31 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 75 NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-----PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 75 ~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
-|.+|-..+....+.| ++..-+++|+.... .....|...+......|-++.++.+|++-++- .|. .-.--
T Consensus 101 mpRIwl~Ylq~l~~Q~-~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQG-LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHH
Confidence 3566766777777887 88899999985332 23456888888888899999999999998763 333 35566
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh------CCCCcHHHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--hhHHHHHH
Q 007134 150 LKAISKLADVRMGEQTHSVAIRN------GFESLVFVQNSLVHMYAAFGHVK---DACKVFELMSER--D--LVAWNSVI 216 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li 216 (616)
+..++..+++++|.+.+...+.. ..+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77788899999999888877532 12556667777777777664432 344556665542 3 34699999
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
.-|.+.|.+++|-++|++..+. ..+..-|+.+.++|++-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 9999999999999999987765 23445566666666543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=2.2e-07 Score=83.35 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDL 390 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 390 (616)
...|.-+|.+.|+...|.+-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|...--
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445677889999999999999998885 344 46788888889999999999999998874 3444 7788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 391 LGRAGLVKQAYEYIQNMLMPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
++..|++++|...|++....|+ ..+|..+.-+..+.|+.+.|...+++.++++|+.+.....+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988743342 468888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 007134 467 QEVRRTMVKERV 478 (616)
Q Consensus 467 ~~~~~~m~~~~~ 478 (616)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998876553
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=8.3e-08 Score=96.82 Aligned_cols=219 Identities=13% Similarity=0.024 Sum_probs=172.8
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+.+.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+++..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888775 56788888888888888888888888877654 36667777888888889889999
Q ss_pred HHHHHHHhCCCc-----C---CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 331 ELFKEMEIGGFV-----P---GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 331 ~l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
+.++.-+....+ + +...-.. ..+.....+....++|-.+....+..+|..++.+|.-.|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 0 0000000 12223334556677777777766766888889999999999999999999
Q ss_pred HHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 403 YIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 403 ~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.|+.. .++| |..+||.|...++...+.++|+.+|++++++.|........|+-.|...|.++||.+.+-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99887 5888 6789999999999999999999999999999999999999999999999999999998866543
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00023 Score=72.69 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhc
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV--NGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSH 357 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 357 (616)
++++.+|. +..+.+.++-...+... ...+..++....+ ...+.+|.+++...-+. .|+. ......+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 44444443 34455555555554332 2334444433222 22467777777776653 3443 333444555677
Q ss_pred CCChHHHHHHHH--------HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCcH-HHHHHHH
Q 007134 358 CGMVDEGFSYFK--------RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPNA-VIWRTLL 420 (616)
Q Consensus 358 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll 420 (616)
.|+++.|.+++. .+.+- +..|. +-.+++..+.+.++-+-|..++.+. .-.+.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 44432 33444 4456778888888866666666544 222222 3444444
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..-.++|+.++|...++++++.+|++......++.+|++. +.+.|..+-+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 5557789999999999999999999999999999999876 4555655543
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=5.9e-06 Score=78.56 Aligned_cols=403 Identities=13% Similarity=0.068 Sum_probs=223.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
+..-+..+..+-...+-... ..+.--+...|...| ++++|..++..+.+ ++...|-.|.-.+.-.|.+.+|..+-
T Consensus 37 DytGAislLefk~~~~~EEE-~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 44445555555443332111 122222333445677 89999999876543 56677888887777788888887775
Q ss_pred HHHHHCCCCCCcch-HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 007134 132 SKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RD 208 (616)
Q Consensus 132 ~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~ 208 (616)
... |+... -..++....+.++-++-..+|+.+... ..-.-+|..+.--.-.+++|.+++.++.. |+
T Consensus 115 ~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 115 EKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred hhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 543 33333 333445556778877777777776442 12234455555555678999999998865 44
Q ss_pred hhHHHH-HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCchHHHHH--------------HHHHHH
Q 007134 209 LVAWNS-VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE--LGALALGRR--------------AHTYVW 271 (616)
Q Consensus 209 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~--------------~~~~~~ 271 (616)
-...|. |.-+|.+..-++-+.++++-.++. -||+ |+..=+.+|.. .=.-..|.+ ..+.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 445554 345677888888888888777664 3443 22223333322 111111111 111222
Q ss_pred HhCC------CCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC-------HH
Q 007134 272 KVGL------SDN-----------VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF-------GK 327 (616)
Q Consensus 272 ~~g~------~~~-----------~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-------~~ 327 (616)
+.++ +.- +..--.|+-.|.+.|++.+|..+.......++.-|-.-...++..|+ ..
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 2211 101 11122233446777888888877777765444444333333333332 33
Q ss_pred HHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 328 EALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
-|...|+-.-+++..-|... --++.+++.-...+++.+-+++.+.. |=...|...+ .+..+++..|.+.+|+++|-+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhh
Confidence 45555544444443333211 12333344445567777777777754 2223333333 467788888888888888877
Q ss_pred CC-CC-CcHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCC-C-CCchhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 407 ML-MP-PNAVIWRTLLG-ACTIHGHSAIAEIARSTLLQLEPK-H-SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 407 m~-~~-pd~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~p~-~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
+. .+ .|..+|.+++. .|.++|..+.|-.++- +.+.. . ......+++-+.+++.+=-|.+.|+.+...+.
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 63 22 36667766655 4577777777766543 33322 1 12233566777788888888888887766543
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=6.6e-06 Score=86.30 Aligned_cols=123 Identities=15% Similarity=0.020 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 359 (616)
.-+...|-..|++++|++..++.... .+..|..-...|-..|++.+|.+.++..+... .-|...=+-....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 34445555666666666666655432 23345555556666666666666666665532 123333344445555666
Q ss_pred ChHHHHHHHHHhHHhhCCCCChhh------H--HHHHHHHHhcCCHHHHHHHHHhC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPKIEH------F--GCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~m 407 (616)
++++|.+++....+. +..|.... | .....+|.+.|++..|++.|...
T Consensus 277 ~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666655442 22222111 1 23345667777777776655443
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=1.1e-05 Score=86.44 Aligned_cols=409 Identities=13% Similarity=0.030 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 007134 58 KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKM 134 (616)
Q Consensus 58 ~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 134 (616)
....+|..+....+.+.-...|..|-..|.... ++..|.+.|++.-+ .|+.+|......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 456677777666665555567889999998877 89999999997654 57788999999999999999998883222
Q ss_pred HHCC-CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 007134 135 HVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213 (616)
Q Consensus 135 ~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 213 (616)
-+.. ...-...|...--.+...+++..+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2211 00011122223334556677888888888887765 667889999999999999999999999877653332221
Q ss_pred H-H--HHHHHhCCCccHHHHHHHHHHHC------------------------------------------------CCCC
Q 007134 214 S-V--INGFASNGKPNEALTLFREMASE------------------------------------------------GVEP 242 (616)
Q Consensus 214 ~-l--i~~~~~~g~~~~A~~~~~~m~~~------------------------------------------------g~~p 242 (616)
. . ...-+..|.+++|+..+...... ...-
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 1 1 11223344555555444443221 0011
Q ss_pred CHHHHHHHHHHHHhcCchH--H----HHHH-HHHHHHhCC--------------------CCchhHHHHHHHHHHh----
Q 007134 243 DGYTMVSLFSACAELGALA--L----GRRA-HTYVWKVGL--------------------SDNVNVNNALLDFYSK---- 291 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~--~----a~~~-~~~~~~~g~--------------------~~~~~~~~~li~~y~~---- 291 (616)
+...|..+-.+|.-.-..+ . ...+ +.+....+. ..+...|..|+.-|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1111111111111000000 0 0000 000000010 0111122222221111
Q ss_pred cC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 292 CG----IIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 292 ~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
+| +...|...+.... ..+...||.|... ...|.+.-|...|-+-.... +-...+|..+.-.|....+++.|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 11 1123444444332 2355666666444 44455555555555444321 23445666666667778889999
Q ss_pred HHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 365 FSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
...|.... .+.| +...|-.........|+.-++..+|..- +--|+..-|.....-...+|+.++-+...
T Consensus 870 ~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 870 EPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred hHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99998886 4444 4677777766677788888888888552 23456666666666666777765544433
Q ss_pred ----------HHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 437 ----------STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 437 ----------~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
++.++-.|++..+|...+......+.+++|.....+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446678888888888888888888888887776554
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=2.1e-06 Score=83.78 Aligned_cols=158 Identities=15% Similarity=0.049 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc----C
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH----C 358 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 358 (616)
.....+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 33345567788888888887765 45666666788888999999999999998874 333 444445554432 3
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCc-HHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHS-AIAEIA 435 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~-~~a~~~ 435 (616)
..+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++++. ...| |..++..++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 468999999999876 45577888888888999999999999998775 3445 567777888888888887 677788
Q ss_pred HHHHHhcCCCCC
Q 007134 436 RSTLLQLEPKHS 447 (616)
Q Consensus 436 ~~~~~~~~p~~~ 447 (616)
+.++....|+.+
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 888888888743
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.9e-05 Score=80.92 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=150.1
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHH
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (616)
+...+-+++|..+|... ..+....+.||. .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHH
Confidence 33444455555555432 333334444443 245666776666666554 46999999999999999999887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 007134 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312 (616)
Q Consensus 233 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (616)
-+. .|...|..++.++.+.|.+++-.+++..+.+..-+|.+ -+.||-+|++.+++.+-++... .||+.-
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVAN 1196 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchh
Confidence 653 36678999999999999999999988888877666554 4678889999999887766543 345444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 392 (616)
...+..-|...|.++.|.-+|.. ...|..|...+...|.+..|.+.-+.. .+..+|-.+-.+|.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHh
Confidence 45555555555555555444432 223444444444445544444333222 23444444444444
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 393 RAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..+.+.-|. --| +-..+.-..-|+.-|...|-+++-+.+++..++++.-..+.|.-|+-+|++
T Consensus 1261 d~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1261 DKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred chhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 333322221 011 111222333444445555555555555555554444444444444444443
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.00019 Score=83.36 Aligned_cols=360 Identities=9% Similarity=-0.031 Sum_probs=186.7
Q ss_pred HHHHhCCCCHHHHHHHHhhCCCCChhH--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHH
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQDPNIFT--WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 161 (616)
..|...| ++.+|..........+... ...........|++..+.+++..+.......+..........+...|++++
T Consensus 349 ~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 349 EAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3344444 5666665555554332211 111122334456666666666554221111122222233334456677777
Q ss_pred HHHHHHHHHHhCC------CCc--HHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhCCCc
Q 007134 162 GEQTHSVAIRNGF------ESL--VFVQNSLVHMYAAFGHVKDACKVFELMSE----RDL----VAWNSVINGFASNGKP 225 (616)
Q Consensus 162 a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 225 (616)
+...+..+...-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 7777776644310 111 11222333455677888888777766432 121 2345555666778888
Q ss_pred cHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcC
Q 007134 226 NEALTLFREMASEGV---EP--DGYTMVSLFSACAELGALALGRRAHTYVWKV----GLS--D-NVNVNNALLDFYSKCG 293 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~~~g 293 (616)
++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 888877777653210 11 1223444555667778888887777765542 211 1 1233444555666678
Q ss_pred CHHHHHHHHHhcCC------C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHH--HHHHHHHhcCC
Q 007134 294 IIIAAQRVFREMRK------R--NAVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTF--VGVLYACSHCG 359 (616)
Q Consensus 294 ~~~~A~~~f~~m~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g 359 (616)
++++|...+++... + ....+..+...+...|++++|.+.+.+.... +..+..... ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 88888777766532 1 1223344555666778888887777776432 110000000 01123334467
Q ss_pred ChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHHcCC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPN-AVIWRTLLGACTIHGH 428 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~ 428 (616)
+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 777777776655421 10000 011234556677777777777777654 12222 2355556667777788
Q ss_pred cHHHHHHHHHHHhcCCC
Q 007134 429 SAIAEIARSTLLQLEPK 445 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~ 445 (616)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 88888887777765543
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=5.1e-05 Score=88.03 Aligned_cols=360 Identities=13% Similarity=0.006 Sum_probs=222.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH----HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL----LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
......+...|++.+|+...... +|......+ .......|+++.+...+..+.......+..........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34455567778877777655443 122211122 22334456776666665554211112223333445556
Q ss_pred HHhcCCHHHHHHHHhhcCC----CC------hh--HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 007134 188 YAAFGHVKDACKVFELMSE----RD------LV--AWNSVINGFASNGKPNEALTLFREMASEGVEPDG----YTMVSLF 251 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~----~~------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll 251 (616)
+...|++++|...++.... .+ .. ....+...+...|++++|...+++....-...+. .....+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 6788999999888876521 11 11 1122334566899999999999988763211222 2334455
Q ss_pred HHHHhcCchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----hhhHHH
Q 007134 252 SACAELGALALGRRAHTYVWKV----GL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------RN----AVSWST 315 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~----~~~~~~ 315 (616)
..+...|+++.|...+...... |. .........+...+...|+++.|...+++... ++ ...+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 5667889999999999887653 21 11123455667788899999999998876542 11 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH-----H
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIG--GFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-----C 386 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 386 (616)
+...+...|++++|...+.+.... ...+. ...+..+.......|+.++|...++..............+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 556677789999999999887542 11122 23444455677789999999999988854211111111111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC------CCCchhhhh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNMLM-P-PNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPK------HSGDYVLLS 454 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~-~-pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~ 454 (616)
.+..+...|+.+.|...+..... . ... ..+..+..++...|+.++|...+++++..... ....+..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445668999999999876631 1 111 12445667788999999999999998654221 123456788
Q ss_pred HHhHhcccchHHHHHHHHHhhCC
Q 007134 455 NLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.+|.+.|+.++|...+.+..+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999998887643
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=6e-05 Score=77.13 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHh
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNV--NVNNALLDFYSK 291 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~y~~ 291 (616)
+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+....+... .++. ..+..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3345556666666666666665542 22333444455555555666666655555544321 1111 223345555556
Q ss_pred cCCHHHHHHHHHhcC
Q 007134 292 CGIIIAAQRVFREMR 306 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~ 306 (616)
.|++++|..+|++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 666666666665543
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.67 E-value=1.7e-05 Score=83.22 Aligned_cols=285 Identities=12% Similarity=-0.002 Sum_probs=185.5
Q ss_pred HHHHhCCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH------
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQD--PNIFT-WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS------ 154 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~------ 154 (616)
..+...| ++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.++..+ |+...|-..+..+.
T Consensus 12 ~il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456777 89999999976543 45444 4566778888999999999999999865 77777666665554
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHhhcCCCChh-HHHHHHHHHHhCCCccHHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK-DACKVFELMSERDLV-AWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~-~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 232 (616)
...+.+...++++.+...- |.......+.-.+..-..+. .+...+..+..+.+. +++.+-.-|.......-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1224566777787775542 22221111211122212222 233334444445543 4555555555444444444555
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 233 REMASE----G----------VEPDG--YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 233 ~~m~~~----g----------~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
...... + -.|.. .++.-+...+...|+.++|..+.+..++.. +..+..|..-...|-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 554322 1 12333 244556677788999999999999998874 444788888899999999999
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH--------HHHHHHHHhcCCChHHHH
Q 007134 297 AAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT--------FVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 297 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~ 365 (616)
+|.+..+....- |-..-+-.+..+.++|+.++|.+++......+..|-... ..-...+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999887754 344455567788899999999999998887665443311 133456788899999999
Q ss_pred HHHHHhHHh
Q 007134 366 SYFKRMKDE 374 (616)
Q Consensus 366 ~~~~~m~~~ 374 (616)
+-|..+.+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 888877664
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.67 E-value=1.1e-05 Score=72.71 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=95.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+..+.|....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~---- 111 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA---- 111 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH----
Confidence 3444455555555555555555555532 1222344444444445555555555554444432 223334444444
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
-+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|++
T Consensus 112 ---------------------------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 112 ---------------------------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred ---------------------------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 44445555555555555444311111 13444444444455555555555555
Q ss_pred hHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 371 MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 371 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..+ ..|+ ......+.....+.|++..|..+++... ..++..+.-..|..-...||.+.+.+.-.++....|.+
T Consensus 165 aL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 165 ALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 443 1122 3334445555555555555555554441 22444444444555556666666666555555555553
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00017 Score=74.36 Aligned_cols=380 Identities=12% Similarity=0.038 Sum_probs=182.6
Q ss_pred hCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~ 163 (616)
+.| +-++|......-.. ++-+.|..+.-.+-...++++|+..|+..+.. .||.. .+.-+--.-++.++++...
T Consensus 53 ~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred ccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344 66666665554332 34566777766666667777777777777663 34433 3332222233445555544
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHH------HHHHhCCCccHHHHHH
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-----RDLVAWNSVI------NGFASNGKPNEALTLF 232 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li------~~~~~~g~~~~A~~~~ 232 (616)
.....+.+.. +.....|..+.-++.-.|+...|..+.+...+ ++...+.-.. .....+|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444444332 23344455555555566666666665554432 2222232222 2233455555555554
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCC--
Q 007134 233 REMASEGVEPDGYTM-VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ-RVFREMRKR-- 308 (616)
Q Consensus 233 ~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~~-- 308 (616)
..-... ..|...+ -+-...+.+.+++++|..++..++... +.+...|-.+..++++--+.-++. .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 443221 1122222 222334455566666666666665543 333333444444444222222222 444433321
Q ss_pred ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH----HHHHHHHhHHhhC-------
Q 007134 309 NAVSWSTLVVGLAVNGF-GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE----GFSYFKRMKDEYG------- 376 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~------- 376 (616)
....-..+--....... .+..-+++..+.+.|++|- |..+.+-+-.....+- +..+...+... |
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccc
Confidence 00000001011111122 2233344455556665543 3333333322221111 11111111110 0
Q ss_pred ---CCCChhhH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 377 ---IMPKIEHF--GCMVDLLGRAGLVKQAYEYIQNM-LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 377 ---~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
-+|....| -.++..+-+.|+++.|..+++.. .-.|.. ..|..-...+...|++++|...++++.+++-.|...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 13444433 35666777888888888888765 345554 345555566777788888888888887776543221
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
-.--+.-..++.+.++|.++.....+.|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 11233444567788888888777765553
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=3.5e-05 Score=78.86 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCC---------CCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEP---------KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+.......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344555666777777777766633111 013334466677788999999999988776543
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00097 Score=68.98 Aligned_cols=408 Identities=11% Similarity=0.028 Sum_probs=248.7
Q ss_pred HhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCCchHH
Q 007134 51 VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ--D-PNIFTWNTMIRGYAESANPLLA 127 (616)
Q Consensus 51 ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A 127 (616)
.|-+..+.|....+..++..+ .+.+.|..+--.+.... ++++|.+.|.... + .|...|--+.-.-++.|+++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 455777888888888777653 57788887766666666 8999999998643 3 4667777776667788899888
Q ss_pred HHHHHHHHHCCCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHHhC-CCCcHHHHHHHH------HHHHhcCCHHHHHH
Q 007134 128 VELYSKMHVSGIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLV------HMYAAFGHVKDACK 199 (616)
Q Consensus 128 ~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li------~~y~~~g~~~~A~~ 199 (616)
.+.-.+.++. .|+ ...|.....+.--.|+...|..+.+...+.. ..|+...+.-.. ....+.|.+++|.+
T Consensus 129 ~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 8888888774 344 4467777778888899999999999988765 245544443222 34567899999998
Q ss_pred HHhhcCCC--Chh-HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHhC
Q 007134 200 VFELMSER--DLV-AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA--ELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 200 ~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g 274 (616)
.+...... |-. .--+...-+.+.++.++|..++..++.. .||..-|...+..+. -.+..+....++....+.-
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 88765532 222 2334566788999999999999999886 577777766665554 2333333336665554321
Q ss_pred ---CCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCC-hhhHHHHHHHHHHcCCHHHHH----HHHHHHHhCC-----
Q 007134 275 ---LSDNVNVNNALLDFYSKCGII-IAAQRVFREMRKRN-AVSWSTLVVGLAVNGFGKEAL----ELFKEMEIGG----- 340 (616)
Q Consensus 275 ---~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~g----- 340 (616)
..|-....+ ++. .-.+ +...+++..+.++. +..+..+.+-|-.-...+-.. .+...+...|
T Consensus 285 ~r~e~p~Rlpls-vl~----~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 285 PRHECPRRLPLS-VLN----GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cccccchhccHH-HhC----cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 111111111 110 0111 12222333332222 223333333332222111111 1111111111
Q ss_pred -----CcCCHH--HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CC
Q 007134 341 -----FVPGEV--TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MP 410 (616)
Q Consensus 341 -----~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 410 (616)
-+|... |+-.+...+-+.|+++.|..+.+.... -.|+ ++.|-.-.+++...|.+++|..++++.. -.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 134443 334556677788999999999988874 3455 6667677788889999999999988773 34
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc-------h--hhhhHHhHhcccchHHHHHHHHH
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD-------Y--VLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~--~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
||..+-.--..-..+.++.++|..+..+.-+.+-+-... + +-=+.+|.++|++.+|.+=+..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 555544344455567788888888887775433221111 1 12356777888887777655443
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.4e-05 Score=72.82 Aligned_cols=381 Identities=12% Similarity=0.061 Sum_probs=219.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHcC
Q 007134 81 YLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP-FLLKAISKL 156 (616)
Q Consensus 81 ~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~~~~~~ 156 (616)
+.+.-+.+.. ++++|.+++..-.+ ++....+.|..+|-...++..|-+.|+++-.. -|...-|. --..++.+.
T Consensus 15 aviy~lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 4444445655 78888888765443 35566777888888888888888888888663 34433332 123445566
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVH--MYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
+.+..|..+...+... ++...-..-+. ..-..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6777777777666432 11111111111 2234678888888888887 4566666666666778889999999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCC-------------c---------------hhHHHHH
Q 007134 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD-------------N---------------VNVNNAL 285 (616)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~---------------~~~~~~l 285 (616)
...+-+---....|+..+ +..+.++.+.|.+...+++.+|+.. | +..+|.-
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 876644333345665544 4456788888888888888876532 1 1223333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.|++..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 44567889999999999999865 677765553322 23455555555555555433 345799999999999988
Q ss_pred hHHHHHHHHHhHHhhCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH-HHcCCcH----HHH
Q 007134 361 VDEGFSYFKRMKDEYGI-MPKIEHFGCMVDLLG-RAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC-TIHGHSA----IAE 433 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~-~~~g~~~----~a~ 433 (616)
++.|-+++.+-... -. -.+...|+ |++++. -.-..++|++-++.+.-..-...-..-+..- .++.+-+ .+.
T Consensus 326 f~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888877643210 00 01122222 233332 2344566655554331000000000011111 1111211 222
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+-++..+++- ......-+..|.+..++..+.++|+.-.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2333333322 11234556677888888888888876544
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=0.00037 Score=73.38 Aligned_cols=387 Identities=15% Similarity=0.060 Sum_probs=230.7
Q ss_pred HhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC----CChhHHHHHH-HHHH-hcCCc
Q 007134 51 VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD----PNIFTWNTMI-RGYA-ESANP 124 (616)
Q Consensus 51 ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~----~~~~~~~~li-~~~~-~~g~~ 124 (616)
.|.+....+-..++.....-+. ....|+.+-..|..+| .-..|..+.+.-.. |+..+--.|+ ..|. +-+..
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~~--~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSFG--EHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 3445555566666666655542 4568888888999998 88899999875432 3323322222 2333 24566
Q ss_pred hHHHHHHHHHHHC--CCC--CCcchHHHHHHHHHcC----C-------CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 125 LLAVELYSKMHVS--GIK--PDTHTYPFLLKAISKL----A-------DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 125 ~~A~~l~~~m~~~--g~~--pd~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
+++++.-.+.... +.. .....|..+.-+|... . ...++.+.++.+++.+ +.|+.+.--+---|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 6776666655541 111 1122233333233211 1 1345667777777765 333333333444578
Q ss_pred hcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 190 AFGHVKDACKVFELMS----ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..-...++.+++..
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHH
Confidence 8899999988877654 3578899999999999999999999998765541 1111100000111111222222221
Q ss_pred HHHHHH---------------------HhCC-------CCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCC-----
Q 007134 266 AHTYVW---------------------KVGL-------SDNVNVNNALLDFYS---KCGIIIAAQRVFREMRKRN----- 309 (616)
Q Consensus 266 ~~~~~~---------------------~~g~-------~~~~~~~~~li~~y~---~~g~~~~A~~~f~~m~~~~----- 309 (616)
....+. +.|. ...+.++.-+..... +.-..+..+..+...+.++
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 111111 1111 011222222221111 1111111112222222232
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 007134 310 -AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGC 386 (616)
Q Consensus 310 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 386 (616)
...|......+...++.++|...+.+.... .|- ...|.-....+...|..++|.+.|.... .+.|+ +...++
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~A 723 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHH
Confidence 234666677788889999998888877653 333 2344444456677899999999998876 56676 778899
Q ss_pred HHHHHHhcCCHHHHHH--HHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 387 MVDLLGRAGLVKQAYE--YIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 387 li~~~~~~g~~~~A~~--~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+.|..++++++.+|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999998877777 77666 4667 789999999999999999999999999999998765
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=9.4e-07 Score=86.27 Aligned_cols=217 Identities=14% Similarity=0.032 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC---ChhhHHHH-HHHH
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KR---NAVSWSTL-VVGL 320 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-~~---~~~~~~~l-i~~~ 320 (616)
+-.-+.+++..+|+.+.+. ..+.+.. .|.......+...+...++-+.+..-+++.. .+ +-.++..+ ...+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3344555555566544332 2222222 4444444444433333344555555554433 22 11122222 2345
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhh---HHHHHHHHHhcCCH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH---FGCMVDLLGRAGLV 397 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~ 397 (616)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+....-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 5679999999988753 3456666778889999999999999999974 4455322 23334444334579
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc-hHHHHHHHHHh
Q 007134 398 KQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW-LNVQEVRRTMV 474 (616)
Q Consensus 398 ~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~ 474 (616)
.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+.+..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999994 4568889999999999999999999999999999999998888888888888988 66778888876
Q ss_pred h
Q 007134 475 K 475 (616)
Q Consensus 475 ~ 475 (616)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
No 94
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.3e-05 Score=73.28 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.+...+...|..+.++.++++-.. ..||....+.|...+...+.+.+|.+.|....
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444555555555544443 24444444444444444555555555544443
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=7.8e-05 Score=78.41 Aligned_cols=359 Identities=12% Similarity=0.081 Sum_probs=221.8
Q ss_pred CCCCCChHHHHHHHH--HHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------
Q 007134 70 GVPLNNPDLGKYLIY--AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-G-------- 138 (616)
Q Consensus 70 g~~~~~~~~~~~li~--~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-------- 138 (616)
|+...|+.+-.++++ +|..-| +++.|.+-.+-+. +-..|..|.+.+++..+.+-|.-.+-.|... |
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 666678888888775 455677 8999988877664 4567999999999999888877777666432 1
Q ss_pred CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHH
Q 007134 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVIN 217 (616)
Q Consensus 139 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~ 217 (616)
-.|+ .+=..+.-.....|.+++|+.+|++..+.. .|=..|-..|.+++|.++-+.-..- =..||..-..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1232 222233333457789999999999887753 3445678889999999887643221 1124555555
Q ss_pred HHHhCCCccHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 218 GFASNGKPNEALTLFREMA----------SEGV---------EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
-+-..++.+.|++.|++.. .... ..|...|.--..-+...|+++.|+.+|..+.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 5566777888888877631 1110 11222222223333455667777666665543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh--
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-- 356 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-- 356 (616)
|-+++...+-.|+.++|-++-++- .|....-.+...|-..|++.+|..+|.+.+. |...|+.|-
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN 1006 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 344555666677777777776653 3555666788889999999999999987653 333333332
Q ss_pred -------------cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-----------CCC--
Q 007134 357 -------------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-----------LMP-- 410 (616)
Q Consensus 357 -------------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~-- 410 (616)
...+.-.|-.+|++. |.. ...-+..|-++|.+.+|+++--+- ...
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 233344455555544 111 122345688889888887764221 022
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------------cCCCC---------CCchhhhhHHhHh
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQ----------------------LEPKH---------SGDYVLLSNLYAY 459 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~y~~ 459 (616)
.|+...+.-..-+..+.++++|..++-.+.+ +-|.. ......++.++.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 2555555555556667777777665544311 12321 1124468888899
Q ss_pred cccchHHHHHH
Q 007134 460 EQRWLNVQEVR 470 (616)
Q Consensus 460 ~g~~~~a~~~~ 470 (616)
+|.+..|-+-|
T Consensus 1158 QG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1158 QGAYHAATKKF 1168 (1416)
T ss_pred ccchHHHHHHH
Confidence 99888776654
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=3.8e-05 Score=79.56 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=98.8
Q ss_pred HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
+......+.+|..+++.+..... -...|..+.+-|+..|+++.|.++|-+.. .++--|..|.++|++++|.++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 33344555555555555544321 12234455566666666666666665432 233445566666666666666
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd 412 (616)
-.+.. |.......|.+-..-.-..|.+.+|.+++-.+.. |+. -|.+|-+.|..++.+++.++-- ||
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h--~d 879 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHH--GD 879 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhC--hh
Confidence 55443 2222333444444444555666666655544322 442 3456666666666666665532 22
Q ss_pred --HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 413 --AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 413 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..|...+..-+-..|++..|+.-|-++ +.+..-.++|...+.|++|.++-+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234445555556666666666555432 233445566666666666665543
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.58 E-value=0.00015 Score=75.28 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=17.9
Q ss_pred CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+....-++..+...|++++|.+-+-...+
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34455566666677777777666555444
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.2e-07 Score=59.20 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=28.4
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.0001 Score=70.15 Aligned_cols=306 Identities=11% Similarity=0.054 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH---HHHHcCCCcHHHHHHHHHHHHhCCCCcHHH-HHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL---KAISKLADVRMGEQTHSVAIRNGFESLVFV-QNSLVHMY 188 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y 188 (616)
-+-..+..+|++..|+.-|....+ .|+..|.++. ..|...|.-..|.+-+...++. +||-.. --.-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 477778888999999999988865 2334444443 4566778888888888887774 566332 22234567
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
.+.|.+++|..-|+...+.+.. -+....++.+.-.. +++. .....+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~-------~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALI-------QEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhH-------HHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 8899999999999887653321 11111111111111 1111 12223334455667777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM---RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
.+++.. +-|...+..-..+|...|++..|..=++.. ...+....--+-..+...|+.+.++...++-.+ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 776653 456667777777788888887776655444 344666666666777777888888877777766 45665
Q ss_pred HH-HH---HH------H---HHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VT-FV---GV------L---YACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t-~~---~l------l---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.. |. .| | ......+++.++....+...+. .|. ...+..+-..+...|++.+|++...+.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 32 11 10 0 0112234444554444444432 122 112233334455566677776666555
Q ss_pred -CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 408 -LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 408 -~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.+.|| +.++.--..+|.....++.|+.-|+++.+.++++.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 35553 55666666666666667777777777766666543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.2e-05 Score=74.76 Aligned_cols=304 Identities=14% Similarity=0.056 Sum_probs=175.6
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHh
Q 007134 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNS-VINGFAS 221 (616)
Q Consensus 145 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~ 221 (616)
-|.+++.-+.+..+++.+.+++..-.+.. +.+....+.|...|-...++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 35556666666667777777766655543 33455566677777777778888777777654 32222221 1244556
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSA--CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
.+.+..|+++...|... |+...-..-+.+ ..+.+++..++.+.++.... .+..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 77778888887777542 222111111211 12345555555555544321 23444444455556777888888
Q ss_pred HHHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 300 RVFREMRKR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 300 ~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
+-|+...+- ....||.-+ +..+.|++..|+++..++++.|++.... ++ -|..-++.+ .+.+
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiD-vrsv---- 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGID-VRSV---- 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCc-hhcc----
Confidence 777776542 345565444 3345677788888888877776542211 00 011111110 0000
Q ss_pred CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 376 GIMPKI-------EHFGCMVDLLGRAGLVKQAYEYIQNML----MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 376 ~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
-.|-. ..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 -gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 -GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred -cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 00111 122333344568889999999998886 33467776554321 334567777777777888888
Q ss_pred CCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 445 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
-.+.++..+.-+|++..-++-|..++-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8788888888899998888888887653
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.5e-07 Score=57.75 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=25.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777888888888888888888877774
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=8.5e-06 Score=75.09 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH-HHcCC--cHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC-TIHGH--SAIA 432 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~-~~~g~--~~~a 432 (616)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| |..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 34456888999999999999999999999877 3566 667888888764 67777 5999
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..+++++++.+|+++..+..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999997643
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.2e-05 Score=76.92 Aligned_cols=181 Identities=12% Similarity=-0.024 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NA---VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFV 349 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 349 (616)
....+..+...|.+.|++++|...|+++... +. .+|..+..++.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4555666667777778888888777766532 11 35566677777778888888888877764211111 1333
Q ss_pred HHHHHHhcC--------CChHHHHHHHHHhHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 007134 350 GVLYACSHC--------GMVDEGFSYFKRMKDEYGIMPKI-EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420 (616)
Q Consensus 350 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll 420 (616)
.+..++.+. |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 333444433 56677777777776532 332 222221111 0000000 00112455
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.++++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 668889999999999999998877654 56789999999999999999999888654
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=2.1e-05 Score=87.07 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=164.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
+.+...|-..|......+++++|++++++.... -.-.|.+++..-...|.-+...++|++..+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455667777778888889999999999887643 23478888888888888888999999987632 22356
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---cHHHHHHHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP---NAVIWRTLLGAC 423 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~ 423 (616)
|..|+..|.+.+..++|-++++.|.++++ -....|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999766 56788999999999999999999999765 2233 344555666667
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCcc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 480 (616)
.++|+.++++.+|+..+.-.|...+.|...+++-.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999988899999999999999999999999998877643
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.0011 Score=63.47 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=142.5
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHH
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN-----ALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~ 299 (616)
-+.|++++-.+.+ +-|. .-..++--+.+.++..+|..+...+.- ..|...+.. ++..-......+.-|.
T Consensus 270 gEgALqVLP~L~~--~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMK--HIPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHh--hChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 4556666555443 2232 222334446677888888776554311 122222222 2222223333467788
Q ss_pred HHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 300 RVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 300 ~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
+.|+-+-.. ++.--.+|.+.+.-..++++++-.++....--...|.+.|+ +..|.+..|.+.+|+++|-.+...
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh
Confidence 888766532 34456788888888889999999998887654444555554 667888899999999999888641
Q ss_pred hCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 375 YGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL-GACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 375 ~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
.+ .|..+|- .|...|.+.++++-|.+++-++....+..+...+| +-|-+.+.+--|-++|..+-.++|. +..+
T Consensus 423 -~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 423 -EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred -hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 22 3344554 45678999999999999999887545665555544 5788999999999999999889987 5444
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=4.8e-06 Score=72.58 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LM 409 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 409 (616)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33443 33455566777777878777777764 22334677777777788888888888888766 24
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
.| +...|..+..++...|+.++|+..+++++++.|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45 5677777777888888888888888888888888777666555543
No 107
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=8.8e-05 Score=73.50 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 007134 295 IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFG--KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369 (616)
Q Consensus 295 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 369 (616)
+++++..++++.+ ++..+|+.....+.+.|+. ++++++++++.+.. .-|..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444444332 2333444333333333332 44555555555432 1233455555555555555666666666
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhc---CC----HHHHHHHH-HhCCCCC-cHHHHHHHHHHHHHc----CCcHHHHHHH
Q 007134 370 RMKDEYGIMPKIEHFGCMVDLLGRA---GL----VKQAYEYI-QNMLMPP-NAVIWRTLLGACTIH----GHSAIAEIAR 436 (616)
Q Consensus 370 ~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~-~~m~~~p-d~~~~~~ll~a~~~~----g~~~~a~~~~ 436 (616)
++.+. -..+...|+.....+.+. |. .++++++. +.+...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 55542 122344444443333332 21 23455555 3334566 667888888888763 3456688888
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhcc------------------cchHHHHHHHHHh
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYEQ------------------RWLNVQEVRRTMV 474 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~g------------------~~~~a~~~~~~m~ 474 (616)
.++++.+|+++.+...|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888878888999987632 2356777777763
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=5.1e-06 Score=72.42 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 460 (616)
.+..+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4566788899999999999999887 3566 6789999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhC
Q 007134 461 QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 461 g~~~~a~~~~~~m~~~ 476 (616)
|++++|...++...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00025 Score=71.64 Aligned_cols=346 Identities=11% Similarity=0.035 Sum_probs=214.3
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 007134 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195 (616)
Q Consensus 116 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 195 (616)
.+....|+++.|+.+|-+..... ++|...|+.=..++++.|++++|.+=-.+.++.. +.-..-|+-+..+..-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 34567899999999999998765 4477889999999999999999988777666653 333667888999999999999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHH-HHCCCCCC--------HHHHHHHHHHHHhcC-----
Q 007134 196 DACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPD--------GYTMVSLFSACAELG----- 258 (616)
Q Consensus 196 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~--------~~t~~~ll~a~~~~~----- 258 (616)
+|+..|.+-.+ .|...++-+..++.-.. ++.+.|..- .-.++.-+ ..+|..++...-+..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999998765 34566777776662110 011111100 00000111 112222222221110
Q ss_pred --chHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHhcCCHHHHH
Q 007134 259 --ALALGRRAHTYVWK--------VG-------LSD------------N----------VNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 259 --~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~y~~~g~~~~A~ 299 (616)
+.....+.+..+.. .| ..| | ..-...+.++.-+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111111100 00 011 0 111234555566666777777
Q ss_pred HHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC--C----HHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 300 RVFREMRKR--NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP--G----EVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 300 ~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
+.+....+- +..-++....+|...|.+.+....-....+.|..- + ...+..+..++.+.++++.|..+|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 777665433 34445666778888888777776666655544221 1 112233344666778888999988887
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
...+ ..|+ .+.+....+++....+... +.|+. .-...-.+.+.+.|++..|...+.++++.+|+++..
T Consensus 325 Lte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 325 LTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 6642 2222 2334445566665555443 45543 223333677889999999999999999999999999
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...+.+|.+.|.+.+|.+--+.-.+.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999876666554
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.37 E-value=0.0013 Score=62.90 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=181.5
Q ss_pred HHHHhCCCCHHHHHHHHhhCCCCChhHHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHcCCCc
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI---RGYAESANPLLAVELYSKMHVSGIKPDTHTYP-FLLKAISKLADV 159 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~ 159 (616)
..+...| ++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .-...+.+.|.+
T Consensus 46 k~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 46 KELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccH
Confidence 3344556 899999999998888888887765 478889999999999999887 678843221 122346788999
Q ss_pred HHHHHHHHHHHHhCCCCc--HHH------------HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC
Q 007134 160 RMGEQTHSVAIRNGFESL--VFV------------QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASN 222 (616)
Q Consensus 160 ~~a~~~~~~~~~~g~~~~--~~~------------~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 222 (616)
+.|..-|+.+++...... ..+ ....+..+.-.|+...|+.....+.+ -|...+..-..+|...
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 999999999988642111 111 11222233444555555555555443 2444444445556666
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007134 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 302 (616)
|++..|+.-++..-+.. ..+..++--+-..+...|+.+.++....+..+. .||-..+-. .|-+ +.+..+.+
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~---~YKk---lkKv~K~l 273 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP---FYKK---LKKVVKSL 273 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---HHHH---HHHHHHHH
Confidence 66666555554443322 223334444444455555555555555544443 233221111 1111 12222222
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH---HHHHHHHhcCCChHHHHHHHHHhHHhhCCCC
Q 007134 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF---VGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379 (616)
Q Consensus 303 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 379 (616)
+.| ......+++.++++-.+...+....-..+++ ..+-.++...|.+.+|++.-.++. .+.|
T Consensus 274 es~------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 274 ESA------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHH------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 222 2345567888888888887765332222333 334456667889999999988887 4556
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 007134 380 K-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP 411 (616)
Q Consensus 380 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 411 (616)
+ +.++---..+|.-...+++|+.-|+... ..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6 8888888888988899999999988763 444
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00085 Score=72.47 Aligned_cols=370 Identities=13% Similarity=0.158 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 007134 56 KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135 (616)
Q Consensus 56 ~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 135 (616)
+..........+..|. .++.++|+|...|...+.+++. .+.+-+ .-=+..+.-|+..+++.-|.-.|++=.
T Consensus 854 LklLlp~LE~~i~eG~--~d~a~hnAlaKIyIDSNNnPE~---fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS--QDPATHNALAKIYIDSNNNPER---FLKENP----YYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHHHHHHHHhccC--cchHHHhhhhheeecCCCChHH---hcccCC----cchhhHHhhhhcccCCceEEEeecccC
Confidence 4455566667777885 4789999999999876523432 222211 111223444555555544433332211
Q ss_pred HC----CCCCCcchHHHHHHHHHcCCCcHH-----------HHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 136 VS----GIKPDTHTYPFLLKAISKLADVRM-----------GEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 136 ~~----g~~pd~~t~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
.. ++--....|....+-+....|.+. -+++.++.+..++ ..|+.-.+.-+.++...+-..+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 00 011111223333333333333332 2455566666554 235566677788888888888888
Q ss_pred HHHhhcCC-CCh-----hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 007134 199 KVFELMSE-RDL-----VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272 (616)
Q Consensus 199 ~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 272 (616)
++++++.- +++ ..-|.||-.-.+. +..+.+++.+++..-+ .|+ +...+...+-+++|..+|...
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-- 1074 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-- 1074 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh--
Confidence 88888752 322 2344455444443 4556677777764432 222 344556667788888888764
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 352 (616)
..+....+.|++ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. .|...|.-++
T Consensus 1075 ---~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi 1140 (1666)
T KOG0985|consen 1075 ---DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVI 1140 (1666)
T ss_pred ---cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHH
Confidence 334445555554 457788888887776654 56889999999999999999988653 3567899999
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a 432 (616)
..+.+.|.+++-.+++....++ .-+|.+. +.||-+|++.+++.+-++++. -||..-...+..-|...|.++.|
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHH
Confidence 9999999999999999888765 5566655 578999999999999887764 47777778888899999999988
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.-++.- .+.|..|+..+...|.+..|...-++.
T Consensus 1214 kl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1214 KLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 887764 446777788888888887777665544
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.0002 Score=79.72 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=165.8
Q ss_pred CCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHh-CC---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHH
Q 007134 141 PDT-HTYPFLLKAISKLADVRMGEQTHSVAIRN-GF---ESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D-LVAWN 213 (616)
Q Consensus 141 pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~ 213 (616)
||. ..|..-+.-....++++.|+++.+++++. ++ .--..+|.+++++-...|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 554 45666677777888889999988888764 11 112457888888888888888888999887652 2 34688
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhc
Q 007134 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKC 292 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~ 292 (616)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-. ...+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8889999999999999999999765 344556777888888888888888888888877521 22456666677788899
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHH
Q 007134 293 GIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 293 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 364 (616)
|+.+.++.+|+.... +....|+..|..=.++|+.+.+..+|++....++.|-. ..|.--|..=.+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999998763 35678999999999999999999999999988877654 3344444433334444333
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=3.1e-05 Score=80.72 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=139.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566667778888999999999999999976 4677889999999999999999888877 4788899999988
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788888888776542 1111112223467777777777543 4445 45677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
|.+.|...+.++|++...++.++.+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777766544
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=9.3e-06 Score=69.72 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
....-.+...+...|++++|..+|+-.. +.| +..-|..|..+|...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455566677889999999999998884 566 67889999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00014 Score=74.04 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=148.1
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHH
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEAL 229 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 229 (616)
+.+.|++.+|.-.|+..++.. +-+...|--|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 56778888888888888888888888887765 35566777778888888888898
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007134 230 TLFREMASEGVE--------PDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300 (616)
Q Consensus 230 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (616)
+.|+..+....+ ++..+-.. +.......+....++|-.+ ...+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887654210 00000000 1111122233344444333 344555777788888888888888888888
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 301 VFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 301 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.|+.... | |...||.|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|...|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8887653 3 677888888888888888888888888877 566642 223355577788888888777766543
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=0.00011 Score=67.85 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888777655544332221 01122566677777777776643 446677888888899999999999
Q ss_pred HHHHHhHHhhCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 366 SYFKRMKDEYGIMPKIEHFGCMVDLL-GRAGL--VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 366 ~~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
..|++..+ -.+.+...+..+..++ .+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998875 2233577788888764 67777 58999999887 3566 66788888899999999999999999999
Q ss_pred hcCCCCCCch
Q 007134 441 QLEPKHSGDY 450 (616)
Q Consensus 441 ~~~p~~~~~~ 450 (616)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998765443
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.0001 Score=70.45 Aligned_cols=182 Identities=13% Similarity=-0.005 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Chh---hH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-D-NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAV---SW 313 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~---~~ 313 (616)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|.+.|++++|...|+.+.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999998876421 1 1246677889999999999999999998642 222 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhH
Q 007134 314 STLVVGLAVN--------GFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384 (616)
Q Consensus 314 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 384 (616)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5556666654 7889999999999874 45432 22111111 00 0 0000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
..+...|.+.|++++|...+++. +-.| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999888776 2233 346888899999999999999998888765544
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=0.00051 Score=74.21 Aligned_cols=374 Identities=11% Similarity=0.013 Sum_probs=204.0
Q ss_pred CHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPN---IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 168 (616)
+...|...|-+..+.| ...|..|...|...-+...|...|+...+.+ .-|..........+++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3556666665444333 3578888888877777888888888876643 22445566777888888888888877211
Q ss_pred HHHhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH
Q 007134 169 AIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244 (616)
Q Consensus 169 ~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 244 (616)
.-+.. ...-..-|-.+.-.|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 11110 000111223344567778888888888877654 4777899999999999999999999998866 35554
Q ss_pred HHHHHHHH--HHHhcCchHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 007134 245 YTMVSLFS--ACAELGALALGRRAHTYVWKVG------LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--------- 307 (616)
Q Consensus 245 ~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------- 307 (616)
+|..... .-+..|.+.++...++.++... ...-..++-.+...+.-.|-..+|...|+...+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3332222 2356788888888888776431 111112222222222233333444444433221
Q ss_pred --CChhhHHHHHHHHHHcCCHH------HHHH-HHHHHHhCCCcCC--------------------HHHHHHHHHHHhc-
Q 007134 308 --RNAVSWSTLVVGLAVNGFGK------EALE-LFKEMEIGGFVPG--------------------EVTFVGVLYACSH- 357 (616)
Q Consensus 308 --~~~~~~~~li~~~~~~g~~~------~A~~-l~~~m~~~g~~p~--------------------~~t~~~ll~a~~~- 357 (616)
.+...|-.+-.++.---+.+ ..+. ++.+....+.-|+ ..+|..+...+.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12333333322221100000 0011 1111222121111 1222222222211
Q ss_pred ---C----CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCC
Q 007134 358 ---C----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGH 428 (616)
Q Consensus 358 ---~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~ 428 (616)
+ .+...|...+....+ -...+...|+.|.-+ ...|.+.-|..-|-+- -..| ...+|..+...|..+.+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1 112234444444433 122334555555433 4455555555544332 2334 56777777777777778
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
++.|..+|.++..++|.+...+...+.+....|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88888888888888887777666666666677777777777665
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=6.2e-05 Score=78.55 Aligned_cols=215 Identities=13% Similarity=0.120 Sum_probs=172.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
+|--..-..+...+.+.|-...|..+|++. ..|...|..|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444556677888999999999999999985 5688899999999999999999888877 378999998888887
Q ss_pred HhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHH
Q 007134 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 331 (616)
.+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888887765432 1111222223468899999999876543 45688888888899999999999
Q ss_pred HHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 332 LFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 332 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..-.. ..||. ..|+.+-.++.+.++-.+|...+.+..+- + .-+...|...+....+.|.+++|++.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9998876 45665 67999999999999999999999998873 4 455667888888889999999999999877
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=8.9e-05 Score=80.95 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 387 (616)
++..+-.|.....+.|++++|+.+++...+ ..||. .....+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577788888888999999999999999988 56765 4566777888999999999999998875 333347777888
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 388 VDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..++.+.|++++|.++|++.. ..|| ..+|.++..++...|+.++|...|+++++...+-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 889999999999999999884 4454 6899999999999999999999999998776553333
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0051 Score=63.19 Aligned_cols=336 Identities=14% Similarity=0.083 Sum_probs=166.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH--HHHHHH--hc
Q 007134 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS--LVHMYA--AF 191 (616)
Q Consensus 116 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 191 (616)
.-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.++.|..+.+ +.+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34445666667776666666543 2223334444445555666666653222 1111 011111 233333 56
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 007134 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHTYV 270 (616)
Q Consensus 192 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 270 (616)
+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.+-- ...-..++.+-..+ .+. .+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HH
Confidence 7777777777754444443444455566677778888888877766543211 11111122111110 000 11
Q ss_pred HHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----hh-----hHHHHHHHHHHcCCHHHHH
Q 007134 271 WKVGLSD--NVNVNNALLDFYSKCGIIIAAQRVFREMR--------KRN-----AV-----SWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 271 ~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~ 330 (616)
......| +-..+-.....+...|++.+|+++++... ..| .. .---|.-++-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111112 11122223345666788888888877661 111 11 1122344556689999999
Q ss_pred HHHHHHHhCCCcCCHH----HHHHHHHHHhcCCChHH--HHHHHHHhHHhh----------CCCCChhhHHHHHHHHHhc
Q 007134 331 ELFKEMEIGGFVPGEV----TFVGVLYACSHCGMVDE--GFSYFKRMKDEY----------GIMPKIEHFGCMVDLLGRA 394 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~ 394 (616)
.++...+... .+|.. .-|.|+ +...-.++-. ++..++...... .-.-.+.--++++.+| .
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999888764 34442 122222 2222222211 222222221100 0000011112333333 4
Q ss_pred CCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HHc-CCcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHH
Q 007134 395 GLVKQAYEYIQNML-MPPNAVIWRTLLGAC-TIH-GHSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 395 g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~-~~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
+.-+.+.++....+ ..|.. .+..++..+ ... .....+..++....+..|.+ ......++.+...+|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566777777665 34443 344444443 222 24677777777777777775 223345667778899999999999
Q ss_pred H
Q 007134 471 R 471 (616)
Q Consensus 471 ~ 471 (616)
.
T Consensus 400 ~ 400 (652)
T KOG2376|consen 400 S 400 (652)
T ss_pred H
Confidence 8
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.2e-06 Score=54.20 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 143 (616)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00012 Score=67.51 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~ 426 (616)
..+-.++...|+-+....+...... .-+.|......++....+.|++.+|...|++.. -++|..+|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4455566667777777776666543 223344455567888888888888888888773 344778888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|+++.|...+.+++++.|+++..+..|+..|.-.|+.+.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888777543
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00024 Score=74.94 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=119.7
Q ss_pred CCcHHHHHHHHH--HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC-C--------CCCC
Q 007134 175 ESLVFVQNSLVH--MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-G--------VEPD 243 (616)
Q Consensus 175 ~~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 243 (616)
..|..+-.++++ .|..-|++|.|.+-.+-+. +...|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 346667777765 5777899999988877664 4567999999999888888776665555321 0 1122
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV 322 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~ 322 (616)
.+=..+.-....+|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-.+-. -.||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222333467899999999998877643 34566778899999988866432211 2245555555556
Q ss_pred cCCHHHHHHHHHHH----------HhCC---------CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 323 NGFGKEALELFKEM----------EIGG---------FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 323 ~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.++.+.|++.|++- .... -..|...|..-.......|+++.|+.+|...+.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 67777777777642 2211 112344444445555678899998888887765
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5e-06 Score=52.53 Aligned_cols=35 Identities=49% Similarity=0.645 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00022 Score=65.81 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
+-..+...|+.+....+........ .-|.......+....+.|++..|...|++... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 4445555566555555555533211 11222333355555666666666666666654 45556666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
++++|..-|.+. .+.| +....+.|...+.-.|+++.|+.++.......+.++..-..|.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666544 2444 445666666666666777777776666665555555555566666666677666665543
No 127
>PLN02789 farnesyltranstransferase
Probab=98.09 E-value=0.0028 Score=62.95 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=115.0
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGY-TMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI- 294 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~- 294 (616)
.+...++.++|+.+..++++. .|+.. .|..--.++...+ .++++...++.+.+.. +.+..+|+...-++.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 344455666666666666653 33333 3333333334444 4566666666666554 3344455544444444554
Q ss_pred -HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC---CC----hHH
Q 007134 295 -IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC---GM----VDE 363 (616)
Q Consensus 295 -~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 363 (616)
.+++...++.+.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 2556666666543 46677877777777778888888888888876533 344555444444433 22 234
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA----GLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTI 425 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 425 (616)
...+...+.. -.+-+...|+-+...+... ++..+|.+++.+. ...| +......|+..+..
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555555543 2334477777777777663 3445677777664 2344 45667777777764
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.00077 Score=74.54 Aligned_cols=238 Identities=9% Similarity=0.003 Sum_probs=136.4
Q ss_pred CCCCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 007134 139 IKPDT-HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217 (616)
Q Consensus 139 ~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 217 (616)
..|+. ..+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 34443 356667777777777777777777665542 22333344444466666665554433 2333
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
......++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 344444443333344444442 2344567777777888888888888888888776 66777888888888887 8888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhC
Q 007134 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYG 376 (616)
Q Consensus 298 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 376 (616)
|.+++.+.. ..|...+++.++.++|.++... .|+.+. |..++ +.+...-+
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~ 218 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHRE 218 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhc
Confidence 887776652 3366667778888888887764 333322 22222 22222112
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 377 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
...-+.++--+-.-|...++++++..+++.+ ...| |.....-++..|
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 2222334444445555666666666666655 2333 344444455444
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0035 Score=58.12 Aligned_cols=247 Identities=13% Similarity=0.021 Sum_probs=128.1
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH-H
Q 007134 188 YAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-R 264 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a-~ 264 (616)
|.-.|.+..+...-..... .++..---|-++|...|++...+.- ... |-.|....+..+......-++.+.- .
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3444666665554443322 2333334455667767766544332 111 1133333333333333333333222 2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC
Q 007134 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344 (616)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (616)
.+.+.+.......+......-...|.+.|+.++|.+.......-+....| ...+.+..+.+-|.+.+++|.+- .+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 33444444444444344444455677788888888777763322333222 33455666777777788887762 24
Q ss_pred HHHHHHHHHHHhc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 007134 345 EVTFVGVLYACSH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRT 418 (616)
Q Consensus 345 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ 418 (616)
..|.+.|..++.+ .+.+.+|.-+|++|.+ ..+|+..+.+.+..++...|++++|..++++.- ...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566655555443 4456677777777765 355666666666666666677777766666552 2224455555
Q ss_pred HHHHHHHcCCc-HHHHHHHHHHHhcCCC
Q 007134 419 LLGACTIHGHS-AIAEIARSTLLQLEPK 445 (616)
Q Consensus 419 ll~a~~~~g~~-~~a~~~~~~~~~~~p~ 445 (616)
++..-...|.. +.-.+...++....|.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 55444444443 3334444555555554
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=5.8e-06 Score=51.90 Aligned_cols=34 Identities=32% Similarity=0.730 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 141 (616)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0016 Score=65.55 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=89.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a 432 (616)
....|.+++|+..++.+.. ..+-|...+....+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888775 344456666677788888888888888887773 5665 56777778888888888888
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+.+++.....+|+++..|..|+.+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888888888888888888888888888877777766553
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=4.2e-05 Score=66.02 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 444556666777778888887777766 2344 56677777777778888888888888888888887777888888888
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777653
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=0.0029 Score=70.11 Aligned_cols=277 Identities=6% Similarity=-0.028 Sum_probs=168.9
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH-HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK-AISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
..+...|-.|+..|...+++++|.++.+...+ ..|+...+-.... .+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 35677888999999899999999999986666 4566655433322 34444554444333 2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 261 (616)
+++......++....-+...|.+ .+..++-.+..+|-+.|+.++|..+++++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 23333333333222333333322 233467778889999999999999999998876 55677888888888888 999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-C
Q 007134 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-G 340 (616)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 340 (616)
+|.+++.+++.. |...+++.++.+++.++..-++.-.. .-+.+.+.+... |
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d-------------~f~~i~~ki~~~~~ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFD-------------FFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccch-------------HHHHHHHHHHhhhc
Confidence 999888877664 56677888888888887654443222 222333333322 2
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA-GLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
..--..++-.+-..|....+++++..+++.+.+ --+.|.....-++..|... ++.....+.++-.+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~----------- 285 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSD----------- 285 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhc-----------
Confidence 222234555566677788889999999998875 2223445555566555411 11111111111111
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcCCCC
Q 007134 420 LGACTIH-GHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 420 l~a~~~~-g~~~~a~~~~~~~~~~~p~~ 446 (616)
.... .++..++.-|++.+..++.+
T Consensus 286 ---l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 286 ---IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred ---cccCCccHHHHHHHHHHHeeecCCC
Confidence 1222 34577788888887777664
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.1e-05 Score=50.53 Aligned_cols=34 Identities=38% Similarity=0.769 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 242 (616)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999988887
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00029 Score=71.25 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 359 (616)
....+|+..+...++++.|.++|+++.+.++..+-.++..+...++..+|++++++..... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3444566677778889999999999988877777778888888889999999999988642 224444555556678899
Q ss_pred ChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 411 (616)
+.+.|..+.+++.+ ..|+ ..+|..|...|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998875 3454 7799999999999999999999999988554
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.94 E-value=0.0017 Score=71.16 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG-YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (616)
++..+-.|.....+.|.+++|..+++...+. .||. ........++.+.+++++|....+...... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4677888888888899999999999988874 5654 455667778888888888888888888765 55667777788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
.++.+.|++++|..+|++...+ +..+|..+..++...|+.++|...|++..+. ..|....|+.++ +++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 8888888888888888888744 3567777888888888888888888888764 234445555544 33344
Q ss_pred HHHHHHHhH
Q 007134 364 GFSYFKRMK 372 (616)
Q Consensus 364 a~~~~~~m~ 372 (616)
-...++.+.
T Consensus 235 ~~~~~~~~~ 243 (694)
T PRK15179 235 DLAALRRLG 243 (694)
T ss_pred HHHHHHHcC
Confidence 444555553
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0017 Score=59.59 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL---VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
+..+.-+...+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++...+.. +-|.+++.-=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444445566777777777776553322222111 112334688999999999998875 44556666555555557
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc---CCcHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH---GHSAIAE 433 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~---g~~~~a~ 433 (616)
|.--+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++- +.| +...+..+...+-.. .+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888877 667889999999999999999999999999984 667 556666666655333 3688899
Q ss_pred HHHHHHHhcCCCCC
Q 007134 434 IARSTLLQLEPKHS 447 (616)
Q Consensus 434 ~~~~~~~~~~p~~~ 447 (616)
..+.+++++.|.+.
T Consensus 212 kyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 212 KYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHhChHhH
Confidence 99999999998543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00028 Score=71.40 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 171 (616)
+++.|+.+|+++.+.++..+..|+..+...++..+|++++++.++.. +-|...+..-.+.|.+.++.+.|.++.+++++
T Consensus 184 ~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555555555555444444455555555555555555555555431 11222333333444555555555555555555
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.. +.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 263 ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 263 LS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 42 2333355555555555555555555555544
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.84 E-value=0.049 Score=55.67 Aligned_cols=394 Identities=13% Similarity=0.124 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--P-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.|...|+.||.-+... ..++++.+++.+.. | ....|..-|..-....+++....+|.+.+..-+ +...|..-
T Consensus 17 P~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 67899999999877665 59999999998865 3 567899999999999999999999999987533 33444444
Q ss_pred HHHHHc-CCCcHHHH----HHHHHH-HHhCCCCc-HHHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C-----
Q 007134 150 LKAISK-LADVRMGE----QTHSVA-IRNGFESL-VFVQNSLVHM---------YAAFGHVKDACKVFELMSE-R----- 207 (616)
Q Consensus 150 l~~~~~-~~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~Li~~---------y~~~g~~~~A~~~f~~~~~-~----- 207 (616)
|.-.-+ .++....+ +.|+.. .+.|.++- -.+|+..++. |....+++..++++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 443322 23333322 333333 34454332 2345555543 4455577888899988764 1
Q ss_pred ----ChhHHHHHHHHH-------HhCCCccHHHHHHHHHHH--CCCCCCHHH---------------HHHHH--------
Q 007134 208 ----DLVAWNSVINGF-------ASNGKPNEALTLFREMAS--EGVEPDGYT---------------MVSLF-------- 251 (616)
Q Consensus 208 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll-------- 251 (616)
|-..|..=|+.. -+...+..|.+++++... .|+.-+..+ |-..|
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111221111110 011223334444433321 111100000 11111
Q ss_pred -----------------------------------------HHHHhcCc-------hHHHHHHHHHHHHhCCCCchhHHH
Q 007134 252 -----------------------------------------SACAELGA-------LALGRRAHTYVWKVGLSDNVNVNN 283 (616)
Q Consensus 252 -----------------------------------------~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~ 283 (616)
..+...|+ -+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111121 222223333322221112222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHH
Q 007134 284 ALLDFYS---KCGIIIAAQRVFREMRK----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYAC 355 (616)
Q Consensus 284 ~li~~y~---~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 355 (616)
++.+.=- +....+.....+++... .-..+|-..|..-.+..-.+.|..+|.+..+.+..+ +....++++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2221100 00112223333333321 123456667777777777889999999999988777 556677777655
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC---CCCc--HHHHHHHHHHHHHcCCcH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPN--AVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~pd--~~~~~~ll~a~~~~g~~~ 430 (616)
+ .++.+-|.++|+.=.+.+|-. ..--...++-+...++-..|..+|++.. ..|| ..+|..+|.--..-|++.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5 688899999999877755433 3444677888889999999999998873 3444 379999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 431 IAEIARSTLLQLEPKH----SGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999988876555521 122345666676666665544444443
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.006 Score=61.49 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=50.8
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCCccHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RD-LVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
..|.++.|+..+..+++. .+.|++......+.+.+.++.++|.+.|+++.. |+ ...+-.+..+|.+.|++.+|+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 345555555555555444 234444455555555555555555555555433 22 23344444555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 232 FREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 232 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
++..... .+-|...|..+..+|...|+..++
T Consensus 397 L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 397 LNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 5554433 233444444444444444444333
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.00057 Score=58.82 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=86.3
Q ss_pred HHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 007134 332 LFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LM 409 (616)
Q Consensus 332 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 409 (616)
.+++... ..|+. .....+...+...|++++|...|+.+... .+.+...|..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 33433 44555666777889999999999888762 2345778888888999999999999988876 34
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.| +..++..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5678888888999999999999999999999998654
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=2.4e-05 Score=47.77 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGI 139 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 139 (616)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999888764
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.7e-05 Score=46.43 Aligned_cols=31 Identities=39% Similarity=0.601 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00036 Score=55.07 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 2344 44677777888888888999999998888888887777888888888889
Q ss_pred cchHHHHHHHHHhh
Q 007134 462 RWLNVQEVRRTMVK 475 (616)
Q Consensus 462 ~~~~a~~~~~~m~~ 475 (616)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99988888877654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0035 Score=54.73 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh--hhHHHHHHHHHhcCC
Q 007134 323 NGFGKEALELFKEMEIGGFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI--EHFGCMVDLLGRAGL 396 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~ 396 (616)
.++...+.+.++.+.... |+. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 455555555555555432 111 11122223444455555555555555442 111111 122233444445555
Q ss_pred HHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 397 VKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 397 ~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
+++|+..++.....+ ....+..+...+...|+.++|...|++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554432111 223333344444444444444444443
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.11 Score=53.12 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELG---ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.+++..+++.....-..-+..+|..+..-=-..- ..+....++..+.+.-...-..+|-.+++.-.+..-++.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566655544333334444443332211111 2445555555555443222234555666766777778888888
Q ss_pred HHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 302 FREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 302 f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
|.+..+. ++...++++.-|+. ++.+-|.++|+--.+. -+|. .-....+.-+.+.++-..+..+|++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 8777642 56667777776664 5667788888754432 1222 23345566667778888888888888775
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 376 GIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 376 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 66665 577888888888888888887777665
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.59 E-value=0.0012 Score=57.59 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH----HHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA----VIWRTLL 420 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~ll 420 (616)
.|..++.+. ..++...+...++.+.+.++-.+- ....-.+...+...|++++|...|+... ..||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 478889999999999886432211 2334456678899999999999998884 22443 3555677
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
..+...|++++|+..++... -.+-.+..+..++++|.+.|++++|...++..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88899999999999997632 23334556778999999999999999998753
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00011 Score=54.78 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc-cchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ-RWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 475 (616)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999998889999999999999 79999998887754
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0041 Score=61.11 Aligned_cols=265 Identities=12% Similarity=-0.009 Sum_probs=158.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGA 259 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 259 (616)
..+.+.+..++.+|+..+....+ .++.-|..-...+...|++++|+--.+.-++. +|. ..+....-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33455666666777766655443 23444555566666666676666555444332 221 1233334444444444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHHcCCHHHHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----RNAVSWSTL-VVGLAVNGFGKEALELF 333 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~ 333 (616)
..+|.+.+.. ...+ ....|+..++.... |--.+|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444330 0000 01111222222211 112333333 34566678888887776
Q ss_pred HHHHhCCCcCCHHHHHHHHH--HHhcCCChHHHHHHHHHhHHhhCCCCChhh-------------HHHHHHHHHhcCCHH
Q 007134 334 KEMEIGGFVPGEVTFVGVLY--ACSHCGMVDEGFSYFKRMKDEYGIMPKIEH-------------FGCMVDLLGRAGLVK 398 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~ 398 (616)
....+.. ++ ..+..+++ ++...++.+.|...|++.. .+.|+-.. +..=..-..+.|++.
T Consensus 193 ~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 6665532 11 12222222 3345677788888887765 33444221 122234457899999
Q ss_pred HHHHHHHhC-C-----CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 399 QAYEYIQNM-L-----MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 399 ~A~~~~~~m-~-----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
+|.+.+.+. . .+|++..|.....+..+.|+.++|+..-+++++++|....+|..-+++|...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999776 3 4455667777777889999999999999999999999888899999999999999999999988
Q ss_pred HhhC
Q 007134 473 MVKE 476 (616)
Q Consensus 473 m~~~ 476 (616)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 8664
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00065 Score=68.96 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=55.6
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
..+...|++++|...|+++.+ .-+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 334455666666666666654 12223455555566666666666666666555 2344 3455556666666666666
Q ss_pred HHHHHHHHHHhcCCCCCCchhh
Q 007134 431 IAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
+|+..++++++++|+++.....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666666666665544333
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.1 Score=51.75 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-.++... .- ..+-|-..+.+|.+.|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3344556677777888887777777777788888888888888766665432 11 22566677777777788777
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
|..+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777766531 245567777788877776665443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=6.4e-05 Score=58.67 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhCC-CCC---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHH
Q 007134 395 GLVKQAYEYIQNML-MPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 395 g~~~~A~~~~~~m~-~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
|++++|+.+++++- ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554441 112 333444455555666666666666655 4445544444445566666666666666665
Q ss_pred HH
Q 007134 471 RT 472 (616)
Q Consensus 471 ~~ 472 (616)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.037 Score=51.19 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.|++++|+++|+..++.+ +.|.+++..-+...-..|.--+|.+-+....+. +..|...|.-+.+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344455555555544443 334444444444443444433444333333332 344555555555555555666655555
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 007134 302 FREMR--KR-NAVSWSTLVVGLAVNG---FGKEALELFKEMEI 338 (616)
Q Consensus 302 f~~m~--~~-~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~ 338 (616)
++++. .| +...+..+...+.-.| +.+-|.++|.+..+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 22 3333333333332222 34556666666655
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00036 Score=65.75 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=58.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~ 431 (616)
..+.+++.+|...|....+ +.|+ .+-|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556777777777777663 3333 444555566677777777776666554 35554 3577777777777777777
Q ss_pred HHHHHHHHHhcCCCCC
Q 007134 432 AEIARSTLLQLEPKHS 447 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~ 447 (616)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 7777777777777655
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.039 Score=51.40 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|..+.+-|.+.++.|.+-| -.+.+-|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 344445555555555555442 2333334444433 23456666666666543 35566666666666666666666
Q ss_pred HHHHHHHhHH
Q 007134 364 GFSYFKRMKD 373 (616)
Q Consensus 364 a~~~~~~m~~ 373 (616)
|..+++....
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.0019 Score=53.87 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACT 424 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~ 424 (616)
+...+...|++++|...|+.+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+. ..|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344445555555555555543211111 12233445555555555555555555441 1222 334555555566
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..|+.+.|...++++++..|+++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCCh
Confidence 66666666666666666666543
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.45 E-value=0.017 Score=59.86 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=123.9
Q ss_pred HHHHHHHHHcCCCcHHHHHH--HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 007134 146 YPFLLKAISKLADVRMGEQT--HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223 (616)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 223 (616)
++..=++|.+.+++..-+-+ ++.+.++|-.|+... +.+.++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444556666655443322 345566676676653 45567778899999888865 45
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
.-..|+++|..|+-- -...-+...|..++-+.+..+-.+. ..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 566677776666421 1122233344444444333322111 11111112344555667777776654
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhh
Q 007134 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383 (616)
Q Consensus 304 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 383 (616)
+..+|-.+-++++-+++... +..+...+...+-+...+..|-++|..|-.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 23455555555555554332 333444444445556667777777777743
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHH-HHHH----------HHHHHHHcCCcHHHHHHHHHH
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPNAV-IWRT----------LLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~-~~~~----------ll~a~~~~g~~~~a~~~~~~~ 439 (616)
...++++....+++.+|..+-++.| +.||+. -|.. .-.|+.+.|+-.+|.++++++
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 2356777778888888888887775 445542 1111 113445555556666666555
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.45 E-value=0.0012 Score=55.15 Aligned_cols=96 Identities=19% Similarity=0.061 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLL 453 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 453 (616)
.++..++..+.+.|++++|.+.|+++. ..|+ ...+..+..++...|+++.|...++.++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356677788999999999999998873 3343 3466778889999999999999999999988885 4457789
Q ss_pred hHHhHhcccchHHHHHHHHHhhCC
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987653
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0012 Score=57.20 Aligned_cols=90 Identities=8% Similarity=-0.014 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
...--+...|++++|..+|+-+- ..| |..-|..|..+|...+++++|...+..+..+++++|..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44445668999999999998873 334 6667889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 007134 464 LNVQEVRRTMVK 475 (616)
Q Consensus 464 ~~a~~~~~~m~~ 475 (616)
+.|.+.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.36 E-value=0.002 Score=65.40 Aligned_cols=102 Identities=9% Similarity=-0.055 Sum_probs=80.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
....+...|++++|+++|++.++.. .-+...|..+..++.+.|++++|...++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456678899999999999999853 234567778888999999999999999999852 2334778889999999999
Q ss_pred CHHHHHHHHHhC-CCCCcHHHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPPNAVIWRTLL 420 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~pd~~~~~~ll 420 (616)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887 3666544444443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0054 Score=55.29 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 386 (616)
....+..+...+...|++++|+..|++.......++ ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566666677777777777777777765432222 245566666677777777777777766642 1223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
+...|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555666666554443322211 112577888888888888874 5555555554443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.00033 Score=51.52 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+...|++++|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666543
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.0071 Score=64.26 Aligned_cols=140 Identities=12% Similarity=0.009 Sum_probs=74.0
Q ss_pred CCChhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcC--------CChHHHHHHHHHhH
Q 007134 307 KRNAVSWSTLVVGLAVNG-----FGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHC--------GMVDEGFSYFKRMK 372 (616)
Q Consensus 307 ~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 372 (616)
..|...|...+.+..... ...+|..+|++..+ ..|+. ..+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346677777777654422 26688888888877 45654 3333322222111 11222233332222
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11012223345555554555556666666666555 25556666666666666666666666666666666666553
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.31 E-value=0.0028 Score=49.75 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
.+..+...+...|++++|.+.+++. ...| +..++..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444555555555555443 1222 224555555555566666666666666555544
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0019 Score=58.22 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
..+..+...+.+.|++++|...|++.- ..|+ ...+..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345555566666677777766665541 1221 35667777777888888888888888888888777777777777
Q ss_pred hHhccc
Q 007134 457 YAYEQR 462 (616)
Q Consensus 457 y~~~g~ 462 (616)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 776665
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.03 Score=55.03 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC-CChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-GMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLL 391 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 391 (616)
+..|...|++..|-+.+.+ +...|... |++++|.+.|++..+-+..... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444443 33345555 6777777777776554332222 23455666778
Q ss_pred HhcCCHHHHHHHHHhCC--------CCCcHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 392 GRAGLVKQAYEYIQNML--------MPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~--------~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.+.|++++|.++|++.. .+.+.. .+...+-.+...||...|...+++....+|.-.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 88888888888887762 111221 22233335567788888999998888888864443
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.00098 Score=48.93 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 387 MVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456688899999999999887 3556 567899999999999999999999999999999864
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.48 Score=51.69 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=110.2
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHH--HhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQD--PNIFTWNTMIRGY--AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 92 ~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++..|..-.++... ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-..+..+++..+|+
T Consensus 24 qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46666666655433 333 344455544 3567777777777666544322 55666666666777777777777777
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHH----HHHHHHhhcCCCChhHHHHHHHHHHhC-CCccH---------HHHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVK----DACKVFELMSERDLVAWNSVINGFASN-GKPNE---------ALTLFR 233 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~---------A~~~~~ 233 (616)
++... .|+......+..+|.+.+++. .|.+++...+++--.-|+.+ +.+.+. ...++ |.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHH
Confidence 77654 344556666666777766654 35666666555444445443 333322 22222 334444
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 234 EMASEGVEP-DGYTMVSLFSACAELGALALGRRAHTY-VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 234 ~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.+.+.+-+- +..-...-+..+...+..++|..++.. ....-...+...-+--++.+.+++++.+-.++-.++.
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444333111 111111122333455666666666632 2222223344444555666666666666555554443
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.21 E-value=0.49 Score=51.67 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH--hCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV--SLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVE 129 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~--~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 129 (616)
....+.+-...+.+.. |. ..+...+.++. +.| +.++|..+++.... .|..|...+-..|...++.++|+.
T Consensus 24 qfkkal~~~~kllkk~--Pn--~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKH--PN--ALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHC--CC--cHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3455555555555543 22 23445555555 677 89999988886543 377889999999999999999999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC----------HHHHHH
Q 007134 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH----------VKDACK 199 (616)
Q Consensus 130 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----------~~~A~~ 199 (616)
+|++..+ ..|+..-...+..++.+.+++.+-.++--++-+. ++.+.+.+=++++.+...-. +.-|.+
T Consensus 99 ~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999877 4577777788888999888887655554444443 34455554455555544321 234666
Q ss_pred HHhhcCCCC--hhH---HHHHHHHHHhCCCccHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 200 VFELMSERD--LVA---WNSVINGFASNGKPNEALTLFR-EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 200 ~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
.++.+.+.+ ..+ .-.-...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666665543 111 1111233456788999999984 3333323334444455667777888888888888888887
Q ss_pred CCC
Q 007134 274 GLS 276 (616)
Q Consensus 274 g~~ 276 (616)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 643
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.0021 Score=57.70 Aligned_cols=93 Identities=9% Similarity=-0.115 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
...|..+...+...|++++|+..|++.. ..|+ ..+|..+...+...|++++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5556677777888899999988887762 3232 3578888899999999999999999999999988888888888
Q ss_pred HhH-------hcccchHHHHHHHHH
Q 007134 456 LYA-------YEQRWLNVQEVRRTM 473 (616)
Q Consensus 456 ~y~-------~~g~~~~a~~~~~~m 473 (616)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 777887666666543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.019 Score=51.54 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 387 (616)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34556666667777778888887777765422221 235666666777777777777777776542 11223444445
Q ss_pred HHHHH
Q 007134 388 VDLLG 392 (616)
Q Consensus 388 i~~~~ 392 (616)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44454
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.01 Score=58.11 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.+|-.++....+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777888888888888889998887543 2233333333332 23357777799999999884 4566788999999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 390 LLGRAGLVKQAYEYIQNML-MPPNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.+.+.|+.+.|..+|++.- .-|.. .+|...+.--.+.|+++....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998873 22332 599999999999999999999999998887773
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.16 E-value=0.023 Score=55.78 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhC----CCcCC--HHHHHHHHHHHhcC
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN-GFGKEALELFKEMEIG----GFVPG--EVTFVGVLYACSHC 358 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~ 358 (616)
++.|.+.|+...|-+.+.. +...|-.. |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3445555555555444333 23444444 5566666655554331 2 111 13344455556666
Q ss_pred CChHHHHHHHHHhHHhhCCC----CChh-hHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 359 GMVDEGFSYFKRMKDEYGIM----PKIE-HFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
|++++|.++|+++....--. .++. .+-..+-.+...|+...|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666655421101 1111 1222333444556666666666554
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.15 E-value=0.015 Score=52.73 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 007134 241 EPDGYTMVSLFSACAEL-----GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315 (616)
Q Consensus 241 ~p~~~t~~~ll~a~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 315 (616)
..|..+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|++.+=| |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 44666777777666543 5666667777888889999999999999988765 3221 111111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
+..-| ..+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23557789999999999999999999999999877654
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0049 Score=58.62 Aligned_cols=101 Identities=16% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHG---HSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
+-|...|--|...|.+.|+++.|..-|.+.. +.| |...+..+..++.... ...++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3459999999999999999999999998773 444 5677777777664333 4678999999999999999999999
Q ss_pred hhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987653
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.0032 Score=59.52 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC
Q 007134 318 VGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAG 395 (616)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 395 (616)
.-+.+.+++++|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3466788899999999998884 44 55777778888999999999888777765 45565 778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCcHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPPNAVIWRT 418 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~pd~~~~~~ 418 (616)
++++|.+.|++. .+.|+-.+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999988776 47886655543
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.10 E-value=0.0015 Score=50.85 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 400 (616)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45556666666665553211 12223333455555555555555555541 11121 12222334455555555555
Q ss_pred HHHHH
Q 007134 401 YEYIQ 405 (616)
Q Consensus 401 ~~~~~ 405 (616)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.08 E-value=0.0075 Score=48.34 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHHcCCC--------cHHHHHHHHHHHHhCCCCcHHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLAD--------VRMGEQTHSVAIRNGFESLVFVQ 181 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 181 (616)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677999999999999999999 9999999999999876532 33567888999999999999999
Q ss_pred HHHHHHHHh
Q 007134 182 NSLVHMYAA 190 (616)
Q Consensus 182 ~~Li~~y~~ 190 (616)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0012 Score=49.83 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=48.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
...+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346778888999999999999999998888888999999999999999988888654
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0066 Score=61.91 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=76.0
Q ss_pred CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHH
Q 007134 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN--GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAW 212 (616)
Q Consensus 139 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~ 212 (616)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666677776666777666666555543 1222234445777777777777777777665443 566777
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666666666666666666554
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.02 E-value=0.0049 Score=60.46 Aligned_cols=129 Identities=13% Similarity=-0.007 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHH---hHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCcH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKR---MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LM-PPNA 413 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~pd~ 413 (616)
..|..|.+.|.-.|+++.|+..++. +.+++|-... ...+..+...+.-.|+++.|.+.++.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666677888888876654 2233443322 456777888888889999998888654 21 1244
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCC--CCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQ----LEP--KHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+..+|.++|....++++|+..+.+-+. ++- ....++..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677888888888899999988876532 221 124567889999999999988887765543
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.99 E-value=0.014 Score=57.04 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH-HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888888888888887542 2223334333333 23356777799999998877 57788888889999
Q ss_pred HHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 188 YAAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987652 2347888888777888888888888777663
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.067 Score=47.04 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=102.3
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC------CCCcH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI-MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML------MPPNA 413 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~pd~ 413 (616)
+-|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++.+. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 457777777788889999999999999999877 54 4557777788888888999999999888773 2344
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...+..++...|....|+..|+.++.--|+ +..-...+..+.++|+.+++..-+..+.+
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445667889999999999999999988887 55666677888999999888766555543
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.46 Score=47.16 Aligned_cols=111 Identities=8% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~ 425 (616)
.+.+..+.-|...|....|.++-... .+ |+...|-..+.+|+..+++++-.++... +..++-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777889988887765554 44 8999999999999999999998887654 3345788899999999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888772 2255788899999999998875443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0019 Score=48.02 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHG-HSAIAEIARSTLLQLEP 444 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 444 (616)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888899999999999999776 3556 5678999999999999 79999999999999887
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.00066 Score=50.38 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888876654
No 187
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.79 Score=49.13 Aligned_cols=116 Identities=9% Similarity=0.011 Sum_probs=88.6
Q ss_pred CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
|......|.+--+.-+...|...+|.++-.+.+- ||-..|---+.+++..+++++-+++-+.+. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3333444555556667778999999888776643 888888888999999999999988888764 24556777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..+|.+.|+.++|...+-+.-. +.-...+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8899999999999998776422 2257889999999999987754
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.87 E-value=0.61 Score=47.04 Aligned_cols=405 Identities=11% Similarity=0.054 Sum_probs=207.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCCC------hHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCC-hhHHHHHHHHH--HhcCCc
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNN------PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN-IFTWNTMIRGY--AESANP 124 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~------~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~-~~~~~~li~~~--~~~g~~ 124 (616)
++..++..++..+.+.-- ++ .+..+.++++|-..+ .+.-........+.. -..|-.+..++ -+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~--~~~f~lkeEvl~grilnAffl~n--ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKE--SSPFLLKEEVLGGRILNAFFLNN--LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhh--cchHHHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 356788889999876542 23 345678888887654 665555544433211 22344444443 356788
Q ss_pred hHHHHHHHHHHHC--CCCCC-----------cchH-HHHHHHHHcCCCcHHHHHHHHHHHHhCC----CCcHHHHHHHHH
Q 007134 125 LLAVELYSKMHVS--GIKPD-----------THTY-PFLLKAISKLADVRMGEQTHSVAIRNGF----ESLVFVQNSLVH 186 (616)
Q Consensus 125 ~~A~~l~~~m~~~--g~~pd-----------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~ 186 (616)
.+|++.+..-... +.+|. .+.+ +..+..+...|.+.+|+.+++.++..=+ .-+..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8898888776654 32221 1111 2345567788999999988888876533 367788888777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------------------------------CccHHHHHHHHH
Q 007134 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG-------------------------------KPNEALTLFREM 235 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~~m 235 (616)
++++.=-++--. .+...=..-|--||..|.+.= +..--++++...
T Consensus 176 mlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 176 MLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 776542211111 111111112333333333211 111112222222
Q ss_pred HHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 007134 236 ASEGVEPDGYTM-VSLFSACAELGALALGRRAHTYVWKVGLS----DNVNVNNALLDFYSKCGIIIAAQRVFREMR--KR 308 (616)
Q Consensus 236 ~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~ 308 (616)
...=+.|+.... ..+...+.+ +.+++..+-+.+....+. .=+..+..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 222244443221 222222222 444444444433332111 113344455555566666666666655443 22
Q ss_pred Chh-------hHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHH---HHhcCCC-hHHHHHHHHHhH
Q 007134 309 NAV-------SWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVT-FVGVLY---ACSHCGM-VDEGFSYFKRMK 372 (616)
Q Consensus 309 ~~~-------~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~~~~m~ 372 (616)
+.. +-.++-...+. .-+...=+.+|.+.....+ |..- ...++. -+-+.|. -++|..+++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221 11112222221 1122233444444443322 2111 111111 1223444 777888888776
Q ss_pred HhhCCCC-ChhhHHHHH----HHHHhc---C---CHHHHHHHHHhCCCCC----cHHHHHHHHHH--HHHcCCcHHHHHH
Q 007134 373 DEYGIMP-KIEHFGCMV----DLLGRA---G---LVKQAYEYIQNMLMPP----NAVIWRTLLGA--CTIHGHSAIAEIA 435 (616)
Q Consensus 373 ~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~m~~~p----d~~~~~~ll~a--~~~~g~~~~a~~~ 435 (616)
+ +.| |...-|.+. ..|.++ . ++-.-.+++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 222 233222221 112111 1 1222244455566555 34455666554 4789999999999
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
-.-+.+..| ++.+|..++-++....+++||..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 69999999999999999999999998663
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.85 E-value=0.019 Score=46.17 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHhCCCCchhH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELG--------ALALGRRAHTYVWKVGLSDNVNV 281 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 281 (616)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999999 899999999998877653 34456677888888888888888
Q ss_pred HHHHHHHHHh
Q 007134 282 NNALLDFYSK 291 (616)
Q Consensus 282 ~~~li~~y~~ 291 (616)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.80 E-value=0.62 Score=46.05 Aligned_cols=218 Identities=18% Similarity=0.140 Sum_probs=135.7
Q ss_pred HhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChh--hHHHHHHHHHH---cC
Q 007134 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-----KRNAV--SWSTLVVGLAV---NG 324 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~~---~g 324 (616)
-+.|+.+.|+++-+..-... +.-.-...+.+...+..|+++.|+++.+.-. ++|+. .-..|+.+-+. ..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34556666665555544332 1223445667777777778888777777543 23332 12223332221 23
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+ ..|....+...+ +.+.|+. +.+=
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dR 314 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDR 314 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHH
Confidence 45566665555444 5666533 23345678899999999999999865 346665554443 4456653 2222
Q ss_pred HHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc-ccchHHHHHHHHHhhCC
Q 007134 404 IQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE-QRWLNVQEVRRTMVKER 477 (616)
Q Consensus 404 ~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~ 477 (616)
+++. .++| +..+...+..+-...|++..|..-.+.+....|. .+.|..|.++-... |+-.++...+-+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A- 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA- 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-
Confidence 2222 2566 4567777888889999999999999999999998 67888999887544 8888888777666543
Q ss_pred CccCCcee
Q 007134 478 VKKTPGHS 485 (616)
Q Consensus 478 ~~~~~~~s 485 (616)
..+|.|+
T Consensus 393 -PrdPaW~ 399 (531)
T COG3898 393 -PRDPAWT 399 (531)
T ss_pred -CCCCccc
Confidence 2345444
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.77 E-value=0.014 Score=52.84 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC------------
Q 007134 298 AQRVFREM--RKRNAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC------------ 358 (616)
Q Consensus 298 A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 358 (616)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466778888888888764 67777888889999999999999999999987652
Q ss_pred ----CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 007134 359 ----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396 (616)
Q Consensus 359 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 396 (616)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667888888865 5888888888888888876664
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.036 Score=47.96 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=37.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (616)
+..-+.+.|++++|.++|+.+..-. +-+..-|-.+...|-..|++++|...|....... +.|...+-.+..+|.+.|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3334444455555555554444321 1122222333333344444444444444444443 2334444444444555555
Q ss_pred HHHHHHHHHh
Q 007134 295 IIAAQRVFRE 304 (616)
Q Consensus 295 ~~~A~~~f~~ 304 (616)
.+.|.+.|+.
T Consensus 119 ~~~A~~aF~~ 128 (157)
T PRK15363 119 VCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.69 E-value=0.019 Score=58.72 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-R-----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
.+.+......+++......+++++..++.+... + -..|..++|+.|...|..++++.+++.=..-|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 455566667777777777888888888877653 1 1235569999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998877666666666555555555
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.68 E-value=0.0012 Score=48.97 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666655542 1223445555555555555555555555555
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.42 Score=50.52 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=87.4
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----cchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD----THTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++++|++++-.|.++|. -|..+.+.|++-...++++.= |-..| ...|..+..-++....++.|.+.+.
T Consensus 749 ~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred chhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877775 355666677776666665321 11111 1345556666666666666666655
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
..-.. ..++.+|.+..++++-+.+-+.+++ |....-.|...+.+.|.-++|.+.|-+-- .|
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p----- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP----- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----
Confidence 43211 2245555555566665555555554 33445566777777787777777665432 12
Q ss_pred HHHHHHHHhcCchHHHHHHHH
Q 007134 248 VSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~ 268 (616)
...+..|..++++.+|.++-.
T Consensus 882 kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 134556667777766665543
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.2 Score=50.18 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKR---NA----VSWSTLVVGLAV---NGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.++-.|....+++...++++.+... ++ ..-.....++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888888754 11 112233445556 7889999999998666556677778777766
Q ss_pred HHhc---------CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH----HHHH---Hh-C---C-C--C
Q 007134 354 ACSH---------CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA----YEYI---QN-M---L-M--P 410 (616)
Q Consensus 354 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m---~-~--~ 410 (616)
.|-. ...+++|...|.+. +.+.|+..+--.++..+.-.|...+. .++- .. . + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 23467777777754 35566655544444455555542222 2222 11 1 1 2 2
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.|---+.+++.++.-.|+.+.|.++.++++++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 35566788999999999999999999999998876
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.66 E-value=0.27 Score=46.86 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCh-hH---HHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--RDL-VA---WNSVINGFASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (616)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33445567777777777777654 221 11 2234566777777888887777776653
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.66 E-value=0.79 Score=45.33 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=176.4
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH--cCCCcHHHHHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAE--SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS--KLADVRMGEQTHSV 168 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~ 168 (616)
+..+.+.|..-. --.-|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 444555554322 12346666666654 45666666655544322 4566677777776543 45888888888888
Q ss_pred HHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCC
Q 007134 169 AIRNGFESLVFV--QNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEG-VEP 242 (616)
Q Consensus 169 ~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 242 (616)
|... |.... ...|.----+.|+.+.|.+.-+..-. | =.-.|.+.+...+..|+++.|+++.+.-+... +.+
T Consensus 146 Ml~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred HhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 8652 22221 11222223456777777777666543 2 23467788888888899999998888765443 344
Q ss_pred CHH--HHHHHHHHHHh---cCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 007134 243 DGY--TMVSLFSACAE---LGALALGRRAHTYVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316 (616)
Q Consensus 243 ~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 316 (616)
|.. .-..++.+-+. ..+...|+..-.+..|. .||..-. -.-...|.+.|++.++-.+++.+-+.....- +
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--i 298 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--I 298 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--H
Confidence 442 22233333221 12455555555554443 3332221 1223567888999999998888865333222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-CCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh-
Q 007134 317 VVGLAVNGFGKEALELFKEMEI-GGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR- 393 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 393 (616)
...|....-.+.++.-+++... ..++||. .+...+..+....|++..|..--+... ...|....|..|.+.-.-
T Consensus 299 a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAe 375 (531)
T COG3898 299 ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhc
Confidence 2333333333445544444432 1245554 556667777788888888877666554 456888888888877554
Q ss_pred cCCHHHHHHHHHhCC
Q 007134 394 AGLVKQAYEYIQNML 408 (616)
Q Consensus 394 ~g~~~~A~~~~~~m~ 408 (616)
.|+-.++...+-+..
T Consensus 376 tGDqg~vR~wlAqav 390 (531)
T COG3898 376 TGDQGKVRQWLAQAV 390 (531)
T ss_pred cCchHHHHHHHHHHh
Confidence 488888888886663
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.64 E-value=0.00089 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.038 Score=45.97 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=49.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHH
Q 007134 115 IRGYAESANPLLAVELYSKMHVSGIKPD--THTYPFLLKAISKLADVRMGEQTHSVAIRNGFES---LVFVQNSLVHMYA 189 (616)
Q Consensus 115 i~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~ 189 (616)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +..+...+.-.+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3455566777777777777777665433 2234455556666677777777776666542 11 2222223333455
Q ss_pred hcCCHHHHHHHHhhc
Q 007134 190 AFGHVKDACKVFELM 204 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~ 204 (616)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666655443
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.073 Score=44.25 Aligned_cols=92 Identities=17% Similarity=0.084 Sum_probs=54.8
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACAELGALALGRRAHTYVWKVGLS--DNVNVNNALLDFYS 290 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~ 290 (616)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888877775544 235556666777777777777777776654211 01122222223445
Q ss_pred hcCCHHHHHHHHHhcC
Q 007134 291 KCGIIIAAQRVFREMR 306 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~ 306 (616)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666654443
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.58 E-value=0.33 Score=42.86 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....++...|...++.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333344444444444444444444444333344444444444444444444444444443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.16 Score=47.27 Aligned_cols=234 Identities=15% Similarity=0.046 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH-HcCCC-cHH-HHHHHHHHHHhCCCCcHHHHHHH
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-SKLAD-VRM-GEQTHSVAIRNGFESLVFVQNSL 184 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~-~~~~~-~~~-a~~~~~~~~~~g~~~~~~~~~~L 184 (616)
..-|+.-+..+++....++|..-++.....+ .||-+ |...-..+ .+.|. +.- .+-+|..+.+. .+ .-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lg--npqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cC--CcHHHH
Confidence 3456666666666666666655554443321 12210 00000000 01111 111 23344444432 11 225667
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC--------hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSE--RD--------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
+..|.-..-+++-...|+.-.. .. ...-+.++..+.-.|.+.-.+.++++.++...+-+......+.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 7666655555555555554332 12 2234566777777888888888888888876666777777888888
Q ss_pred HhcCchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCH
Q 007134 255 AELGALALGRRAHTYVWKVG-----LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 326 (616)
.+.|+.+.|...++...+.. ...+..+.......|.-.+++..|...|+++... |++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 88899999988888776643 2333334444444566677788888888777654 555566555555667888
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGEVTFV 349 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~ 349 (616)
.+|++.++.|... .|...+-+
T Consensus 303 ~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 303 KDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHhcc--CCccchhh
Confidence 8888888888874 45444433
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.50 E-value=0.0075 Score=61.00 Aligned_cols=96 Identities=16% Similarity=0.010 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
+...|+.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3667778888888888888888888764 566753 35788888888888888888888888776321 221111
Q ss_pred H--HhHhcccchHHHHHHHHHhhCCC
Q 007134 455 N--LYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 455 ~--~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
. .+......++..++++.+++-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122344566666776666554
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.016 Score=55.81 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhhhH
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLLSN 455 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 455 (616)
|..-+..+.+.|++++|...|+... ..|+ ...+..+..++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444445566666666665552 2232 1344556666666777777777777776666654 333444566
Q ss_pred HhHhcccchHHHHHHHHHhh
Q 007134 456 LYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~ 475 (616)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777766644
No 206
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.39 E-value=0.2 Score=53.47 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444455677777777776653 3356666666667777777777777666554
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.067 Score=51.53 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----cHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP----NAVIWRTLL 420 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----d~~~~~~ll 420 (616)
.|...+....+.|++++|...|+.+.+.|.-.+- ...+.-+...|...|++++|...|+.+. ..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444557777777777777665421110 2345566777777788888877777662 122 234555566
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999988888744
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.24 Score=46.20 Aligned_cols=134 Identities=13% Similarity=0.006 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC----CCChhhHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI----MPKIEHFGCM 387 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~~~~~~l 387 (616)
.-+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+. .....+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345667777778888888999999988765666777788888888999999999999987664222 2222222233
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 388 VDLLGRAGLVKQAYEYIQNMLM-PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~-~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
...|.-++++.+|...+.+.+. .| |+...|.-.-...-.|+...|.+..+.+.+..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3445556667777777766642 22 4444444333444556777777777777766665
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.27 E-value=0.01 Score=44.52 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 389 DLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..|.+.+++++|.++++.+- ..| +...|......+...|++++|...++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 46788899999999998873 556 56778888888999999999999999999999976544
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.17 E-value=0.0067 Score=40.35 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
+|..+..++...|++++|+++++++++.+|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 67788899999999999999999999999998877766653
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=1.2 Score=44.48 Aligned_cols=158 Identities=13% Similarity=-0.031 Sum_probs=101.5
Q ss_pred HHHHHHHHH-HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhcCCHHHHHHHHHhcCCCChh---------
Q 007134 244 GYTMVSLFS-ACAELGALALGRRAHTYVWKVGLSDNVNVNNALL--DFYSKCGIIIAAQRVFREMRKRNAV--------- 311 (616)
Q Consensus 244 ~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~f~~m~~~~~~--------- 311 (616)
-.++-.+-. .+...++.+.|.++-..+.+..- .+ .+..++ .++.-.++.+.|...|++..+-|+.
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 344433332 34567888888888777776541 11 222222 2334467888999999887754332
Q ss_pred ------hHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-h
Q 007134 312 ------SWSTLVVGLAVNGFGKEALELFKEMEIG---GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-I 381 (616)
Q Consensus 312 ------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 381 (616)
.|..-..-..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHH
Confidence 2223334456789999999999998763 4566667777777788899999999988877764 3332 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|..-..++.-.+++++|.+-+++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334455667888888888665
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.14 E-value=1.3 Score=42.25 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY-TM---VSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
+...+-.....+.+.|++++|++.|+++...- |+.. +- ..+..++.+.++++.|...++..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444445566677888888888888887753 3322 21 23445666777777777777777664
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.57 Score=49.18 Aligned_cols=91 Identities=11% Similarity=-0.035 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh--------
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV-------- 451 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-------- 451 (616)
+.++...+..-+-+...+.-|-++|.+|+-. .++.......+++++|..+.++.-+.-|+.--.|.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 4555555556666777788899999998722 34555667889999999999887666555221121
Q ss_pred --hhhHHhHhcccchHHHHHHHHHhhC
Q 007134 452 --LLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 452 --~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
-.-.+|-++|+-.||.++++++...
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2234566777777777777766543
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.90 E-value=2.3 Score=43.03 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI---FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.|...|-.||..|...+ .+++-++++++|..|-+ ..|..-|++=....+++....+|.+.+..... ...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~-s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQE-SMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhh-hHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 578899999999999998 99999999999988753 57999998888888999999999999876444 3344444
Q ss_pred HHHHHc
Q 007134 150 LKAISK 155 (616)
Q Consensus 150 l~~~~~ 155 (616)
+.-..+
T Consensus 116 l~YIRr 121 (660)
T COG5107 116 LEYIRR 121 (660)
T ss_pred HHHHHh
Confidence 443333
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=3.3 Score=44.71 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=43.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCc--hHHHHHHHHHHHCCCCCCcchHHHHHHHHHcC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQDPN---IFTWNTMIRGYAESANP--LLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 156 (616)
+|+-+...+ .+..|+++-..+..|. ...|.....-+.+..+. +++++..++=+..- .-...+|..+.+-....
T Consensus 443 vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRH-LYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcc-hhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 444555555 6777777766666554 33444444445544322 23333333322221 12345566666666666
Q ss_pred CCcHHHHHHHH
Q 007134 157 ADVRMGEQTHS 167 (616)
Q Consensus 157 ~~~~~a~~~~~ 167 (616)
|+++.|..+.+
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77777766654
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.85 E-value=0.052 Score=44.69 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----CchhhhhHHhHhccc
Q 007134 389 DLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS----GDYVLLSNLYAYEQR 462 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~ 462 (616)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|.+-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999998765 3444 678899999999999999999999999987754422 347778888999999
Q ss_pred chHHHHHHHHHhhCCC
Q 007134 463 WLNVQEVRRTMVKERV 478 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~~ 478 (616)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877663
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.69 E-value=0.21 Score=41.37 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+- .|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCch----------hhcchHHH
Confidence 3467788888888887763 35566777775555555666666666666432 3332 33444444
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
...+-.++ .+......-+......|+-+.-.++...+.+.+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444333 233444556777888999999999998887655556778889999999999999999999999999875
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.68 E-value=0.022 Score=43.45 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-------L-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555433 1 1122 24555555566666666666666665543
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.68 E-value=2.8 Score=42.50 Aligned_cols=333 Identities=14% Similarity=0.078 Sum_probs=173.6
Q ss_pred hCCCCHHHHHHHHhhCCC------------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC----CCCcch
Q 007134 88 SLSFPMSYAHNIFSHVQD------------------PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI----KPDTHT 145 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t 145 (616)
+.+ .+..|...|..-.+ +|-+-=+..+..+...|++.++..++++|...=. ..|..+
T Consensus 91 ~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred Hhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 455 68999888753321 2233346777888899999999999999876533 378888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCC-----------------------------
Q 007134 146 YPFLLKAISKLADVRMGEQTHSVAIRN---GFESLVFVQNSLVHMYAAFGH----------------------------- 193 (616)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~y~~~g~----------------------------- 193 (616)
|+.++-.++++ ++-++++. .+-|| |--++-.|-+.=.
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 98866555432 22222221 12222 1122222222110
Q ss_pred -----HHHHHHHHhhc-CCCC-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCchHH
Q 007134 194 -----VKDACKVFELM-SERD-LVAWNSVINGFASNGKPNEALTLFREMASEGVEP----DGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 194 -----~~~A~~~f~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~ 262 (616)
+-++.+.++.- ..|+ ......|+..+.+ +.+++..+-+.+....+.+ =..+|..++..+.+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11112222111 0121 1122233333443 4555555555544332221 23578889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHH-------HHHHHHHh----cCCHHHHHHHHHhcCCCChhhH---HHHH---HHHHHcCC
Q 007134 263 GRRAHTYVWKVGLSDNVNVNN-------ALLDFYSK----CGIIIAAQRVFREMRKRNAVSW---STLV---VGLAVNGF 325 (616)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~-------~li~~y~~----~g~~~~A~~~f~~m~~~~~~~~---~~li---~~~~~~g~ 325 (616)
|.+.+..+.-. .|+..+.. .+.++.+. .-++.+=..+++.+...|+..- ..|+ .-+-+.|.
T Consensus 317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCC
Confidence 99988876553 33333222 22233221 1112333444444444333211 1122 22334444
Q ss_pred -HHHHHHHHHHHHhCCCcCC-HHH----HHHHHHHHhc---CCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHH--
Q 007134 326 -GKEALELFKEMEIGGFVPG-EVT----FVGVLYACSH---CGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDL-- 390 (616)
Q Consensus 326 -~~~A~~l~~~m~~~g~~p~-~~t----~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~-- 390 (616)
-++|+++++...+ +.|. ... +..+=.+|.+ ...+.+-..+-+-+.+ -|++|- ...-|.|.++
T Consensus 395 ~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 395 CDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred ccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHH
Confidence 7788888887766 2332 222 2222223322 2334444444444433 377664 3345555554
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
+...|++.++.-.-.-+ .+.|.+.+|.-+.-.....+++++|...+..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55678888876555444 36778888877777777888888888777653
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.68 E-value=0.14 Score=42.96 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=29.2
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555543
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.17 Score=48.40 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhHHHHH
Q 007134 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG---HVKDACKVFELMSE---RDLVAWNSV 215 (616)
Q Consensus 142 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~---~~~~~~~~l 215 (616)
|...|-.|..+|...|+.+.|..-|..+.+.. ++++..+..+..++.... ...++..+|+++.. .|+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 33445455555555555555555555544432 233333333333322221 22344555555433 133344444
Q ss_pred HHHHHhCCCccHHHHHHHHHHHC
Q 007134 216 INGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 45555555555555555555544
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.49 E-value=0.06 Score=53.13 Aligned_cols=256 Identities=14% Similarity=0.061 Sum_probs=150.4
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHcCCCcHHHHHHHHHHHH--h--CC-CCcHHHHHHHHHH
Q 007134 117 GYAESANPLLAVELYSKMHVSGIKPDTH----TYPFLLKAISKLADVRMGEQTHSVAIR--N--GF-ESLVFVQNSLVHM 187 (616)
Q Consensus 117 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~Li~~ 187 (616)
-+++.|+.+..+.+|+..++.|.. |-. .|..+-++|.-.+|+++|.++|..=+. . |- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 367788888889999988887643 333 355566677777888888888754221 1 10 0011222234444
Q ss_pred HHhcCCHHHHHHHHhhcC-------CC--ChhHHHHHHHHHHhCCC--------------------ccHHHHHHHHHH--
Q 007134 188 YAAFGHVKDACKVFELMS-------ER--DLVAWNSVINGFASNGK--------------------PNEALTLFREMA-- 236 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 236 (616)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 455566766654332211 11 12234445666665443 223444443321
Q ss_pred --HCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 007134 237 --SEGVE-PDGYTMVSLFSACAELGALALGRRAHTYVWK----VGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMR-- 306 (616)
Q Consensus 237 --~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-- 306 (616)
+.|-. .-...|..+.+.|.-+|+++.|...|+.-.. .|- ......+..|.++|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 1113455555556667889999888875432 332 2234566778888888999999998887542
Q ss_pred -----CCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 307 -----KRN--AVSWSTLVVGLAVNGFGKEALELFKEMEI----GG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 307 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.+. ..+.-+|...|.-..++++|+.++.+=.. .+ ..-....+-+|..++...|.-++|+.+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 33556677788878888899888775432 11 122345677888888888888888876665443
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.45 E-value=4.5 Score=43.25 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=67.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCcchHHHH-------HHHHHcCCCcHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFL-------LKAISKLADVRMGEQ 164 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~l-------l~~~~~~~~~~~a~~ 164 (616)
+++|.+..+.- |.+..|..+...-.+.-.++.|...|-+.... |++.-.. +..+ ...-+--|.+++|.+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 66666666554 44556777776666666666666666555432 3221000 0000 011122367777777
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-----DLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
++-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|.
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654432 3456666777776666666543211 12345555555555445555544443
No 224
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.40 E-value=6.3 Score=44.96 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=19.0
Q ss_pred CCcHHHHHHHHHHHHhcC--CHHHHHHHHhhcC
Q 007134 175 ESLVFVQNSLVHMYAAFG--HVKDACKVFELMS 205 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~~~ 205 (616)
.|+ .-.-.+|..|++.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 44556777777777 6677766665554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.33 E-value=0.016 Score=44.20 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCC---CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQL----EPKH---SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+++.+...+...|++++|+..+++++++ ++++ ..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57888999999999999999999999754 2222 34566899999999999999999987643
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.33 E-value=0.63 Score=43.09 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=25.9
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 400 (616)
+..-|.+.|.+..|..-++.+.+++.-.+. ......|+..|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344466666666666666666665422221 22344556666666666543
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.12 Score=51.31 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+..|..++.+.+++..|+....++++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45666777788888899999999999999999888888889999999999999999988876
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.15 E-value=0.44 Score=40.56 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 391 LGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..+.|++++|.+.|+.+ |..| ....-..|+.++...+++++|...+++.+++.|.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 44667777777777666 2223 23455667778888888888888888888888886544
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.14 E-value=0.22 Score=41.88 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHHc
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNAVIWRTLLGACTIH 426 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~ 426 (616)
...|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 55678888888888888888888888877665 4554677888887655433
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.95 E-value=0.06 Score=46.88 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+...++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.+.++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556677778889999999999999999999999999999999999999999999998774
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.21 Score=49.70 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=97.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 396 (616)
...|.+.|++..|...|++.... |. +.+.-+.++.... .. .-...++.+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 45777888888888888876541 00 0011111221111 11 224456778888999999
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH-HHHHHHH
Q 007134 397 VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV-QEVRRTM 473 (616)
Q Consensus 397 ~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 473 (616)
+.+|++..++. ...| |+...-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+.....+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776 3444 7777777788999999999999999999999999987777777777666655554 6788888
Q ss_pred hhC
Q 007134 474 VKE 476 (616)
Q Consensus 474 ~~~ 476 (616)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.83 E-value=3.2 Score=38.19 Aligned_cols=193 Identities=19% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK-----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
..........+...+.+..+...+..... .....+..+...+...+.+..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34444555555556666666555555431 2333444455555555666666666666655332221 11111112
Q ss_pred -HHhcCCChHHHHHHHHHhHHhhCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHH
Q 007134 354 -ACSHCGMVDEGFSYFKRMKDEYGIMP----KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN--AVIWRTLLGACTI 425 (616)
Q Consensus 354 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd--~~~~~~ll~a~~~ 425 (616)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 45666677777766666632 222 23333333344556667777777766552 2333 4566666667777
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++++.+...+...+...|.....+..++..+...|.++++...+....+
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665344455555555555667777766665544
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.17 Score=47.86 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhh
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM----L---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLL 453 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m----~---~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 453 (616)
|+.-++. .+.|++.+|...|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |+.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444443 3555566666666544 1 34455444 6677777788888888877777666654 4456677
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.+..+.|+.++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 7777788888888888877754
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.66 E-value=0.18 Score=51.26 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI----EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+...++.+..++.+.|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446777888888888888888888888764 34663 34788888888888888888888765
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.59 E-value=4.7 Score=45.88 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 192 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
|+++.|+.-+.++. ...|.-.+.---++|.+.+|+.++ .|+...+..+..+|++. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 44555555554443 223333444444555666665553 56666666666555431 11
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH--HH
Q 007134 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT--FV 349 (616)
Q Consensus 272 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 349 (616)
+.. .++--.-+|.++|++++|.+. |...|++.+|+.+-.+|... -|... --
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHH
Confidence 111 122233457777777776654 44567777777777766531 12211 13
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 350 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..-+...++.-+|-++..+...+ +...+..|++.-.+++|+.+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 4555566667766666666555432 223445566666777777666544
No 236
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.59 E-value=3.8 Score=37.89 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
...-..+|...+..+.... ..+--.+...|.+.|.+..|..-++.+ |-.| .......++.++...|..+.
T Consensus 122 ~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred CchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 3444455555444443310 122234567788888888887776665 3222 22466677778888887774
Q ss_pred HH
Q 007134 432 AE 433 (616)
Q Consensus 432 a~ 433 (616)
+.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.49 E-value=0.82 Score=47.66 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=83.1
Q ss_pred HhCCCccHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 220 ASNGKPNEALTLFR-EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 220 ~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
.-.++++++.++.. .-.-..++ ..-...++.-+.+.|..+.|.++-.. . ..-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHH
Confidence 34555555555443 11111121 23345555556666666666654321 1 1223445677888888
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC
Q 007134 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378 (616)
Q Consensus 299 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 378 (616)
.++-++.. +...|..|.......|+.+-|.+.|++... |..|+-.|.-.|+.+.-.++-+.....
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~---- 402 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER---- 402 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT----
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc----
Confidence 77765554 556788888888888888888888877542 344555566677776666665555432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (616)
.-++....++.-.|+.++..+++.+-+.
T Consensus 403 ---~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 403 ---GDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ---T-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ---cCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 1234444455556777777777766553
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=94.48 E-value=0.46 Score=48.55 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=48.1
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 398 KQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 398 ~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+|.++.++. ...| |+.....+..+....++++.|...|+++..++|+.+..+...+....-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444333 2333 5555555666566666677777777777777777766666677666777777777776666433
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.38 E-value=2.8 Score=35.99 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
.++..+.+.+.......+++.+.+.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 45555555566666666666666655 35556666677666654
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.35 E-value=4.2 Score=37.40 Aligned_cols=193 Identities=19% Similarity=0.106 Sum_probs=113.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHH-HHHHc
Q 007134 249 SLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--N-AVSWSTLVV-GLAVN 323 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~-~~~~~~li~-~~~~~ 323 (616)
.....+...+.+..+...+...... ........+..+...+...+++..+.+.+...... + ......... .+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 3333334444444444444333321 12233334444444555555556666666555432 1 122222223 67777
Q ss_pred CCHHHHHHHHHHHHhCCCcC----CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHH
Q 007134 324 GFGKEALELFKEMEIGGFVP----GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 398 (616)
|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...++++
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHH
Confidence 888888888887754 222 223333444445667888888888888875 2333 3566777788888888888
Q ss_pred HHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 399 QAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 399 ~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887663 4444 445555555555677789999999998888876
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.30 E-value=5.5 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHh---CCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007134 183 SLVHMYAAFGHVKDACKVFELMSER---DL----VAWNSVINGFAS---NGKPNEALTLFREMASEGVEPDGYTMVSLFS 252 (616)
Q Consensus 183 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (616)
.|+-.|-...+++...++++.+... +. ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444688888999999999888753 11 111233445556 7889999999998766666788888877766
Q ss_pred HH
Q 007134 253 AC 254 (616)
Q Consensus 253 a~ 254 (616)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2.2 Score=36.69 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.++..+.+.+.......+++.+... +....|.++..|++.+ ..+.++.++. .++......+++.|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555556666666666665433 3445666676666653 2344444442 1223334445666666666
Q ss_pred hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 007134 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA-GLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~ 424 (616)
++++..++..+.. |...++.+... ++.+.|.+++.+-. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 6666666655422 12223333333 56666666665522 4455655555443
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.16 E-value=0.4 Score=45.17 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=81.8
Q ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC---------
Q 007134 296 IAAQRVFREMR--KRNAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG--------- 359 (616)
Q Consensus 296 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 359 (616)
-..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456777776 67888999998888765 567777788899999999999999999999876533
Q ss_pred -------ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH
Q 007134 360 -------MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397 (616)
Q Consensus 360 -------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (616)
.-+=+++++++|.. +|+.||..+-..|++++++.|..
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23447889999965 69999999999999999998864
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.91 E-value=0.1 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888899999999999999999998886
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.88 E-value=0.59 Score=40.58 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.++..+...|++++|+.+.+++.... +-|...+..++.++...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445555566666666666555532 224455555666666666666666555554
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=2 Score=41.18 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=84.6
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHH---HHHHHHHcCCcH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT---LLGACTIHGHSA 430 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~---ll~a~~~~g~~~ 430 (616)
.....|+..+|...|+..... .+-+...-..|+..|...|+.+.|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345678888888888888763 233356667788889999999999999999874433333332 233444444444
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+...+-++ ...+|++...-..++..|...|+.++|.+.+-.+.+++
T Consensus 221 ~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44444333 35689888888899999999999999998887776543
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.75 E-value=2.5 Score=44.70 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=104.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCH-----HHHHHHHHHHh----cCCChHHHHHHHHHhHHhhCCCCChhh
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIG-GFVPGE-----VTFVGVLYACS----HCGMVDEGFSYFKRMKDEYGIMPKIEH 383 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 383 (616)
..+++...-.|+-+.+++++.+-.+. ++.-.. .+|..++..+. .....+.|.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 34445555567777777777665543 222111 12333332222 2567889999999998765 77665
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh-hhhH
Q 007134 384 FGCM-VDLLGRAGLVKQAYEYIQNMLM------PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV-LLSN 455 (616)
Q Consensus 384 ~~~l-i~~~~~~g~~~~A~~~~~~m~~------~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 455 (616)
|.-. .+.+...|++++|++.|++... +.....+--+...+....++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5443 3567789999999999987531 112344445666778889999999999999987766555555 5566
Q ss_pred HhHhcccc-------hHHHHHHHHHhh
Q 007134 456 LYAYEQRW-------LNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~-------~~a~~~~~~m~~ 475 (616)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67788888 888888887754
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.71 E-value=2 Score=45.49 Aligned_cols=171 Identities=16% Similarity=0.063 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C---------hhHHHHHHHHHHhC----CCccH
Q 007134 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D---------LVAWNSVINGFASN----GKPNE 227 (616)
Q Consensus 162 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~---------~~~~~~li~~~~~~----g~~~~ 227 (616)
+.-++..++.. +||. ...++...+=.||-+.+++.+.+..+. + ...|+.++..+... ...+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 3333 234555555666666666666654331 1 12355555444433 34566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCchHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 228 ALTLFREMASEGVEPDGYTMVSLF-SACAELGALALGRRAHTYVWKV--GL-SDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~--g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
|.+++..+.+. -|+...|...- +.+...|+++.|.+.++..... .. +.....+--+.-.+.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 77777777664 56665554332 3445667788888877765431 11 1122223335556777889999999999
Q ss_pred hcCCCChh---hHHHH-HHHHHHcCCH-------HHHHHHHHHHHh
Q 007134 304 EMRKRNAV---SWSTL-VVGLAVNGFG-------KEALELFKEMEI 338 (616)
Q Consensus 304 ~m~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~l~~~m~~ 338 (616)
.+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88865432 33333 3345556777 888888887643
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.62 E-value=0.17 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888999999999999998888874
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.57 E-value=1.4 Score=43.30 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=22.3
Q ss_pred HHhCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 219 FASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
+.+..+.++|+..+.+-...- ..---.++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344566667776666554321 11112344444455555555544443
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.54 E-value=2.2 Score=36.44 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHhcCCCCC
Q 007134 429 SAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~ 447 (616)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777777787777743
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.39 E-value=7.8 Score=40.11 Aligned_cols=57 Identities=11% Similarity=-0.011 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.+..+.-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3455555667777777777776653211 12234445666666666666666666554
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=93.33 E-value=5.9 Score=40.79 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=102.7
Q ss_pred hhH--HHHHHHHHHcC-----CHHHHHHHHHHHHh-CCCcCCHH-HHHHHHHHHh---------cCCChHHHHHHHHHhH
Q 007134 311 VSW--STLVVGLAVNG-----FGKEALELFKEMEI-GGFVPGEV-TFVGVLYACS---------HCGMVDEGFSYFKRMK 372 (616)
Q Consensus 311 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 372 (616)
..| ...+.|....- ..+.|+.+|.+... +...|+.. .|..+..++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554421 35678888888872 23566642 3333222221 1334556666666665
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+ --+-|......+..++.-.|+++.|...|++. ...|| ..+|......+...|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 22334666666777778888899999999887 47786 46777777788889999999999999999999855443
Q ss_pred h--hhhHHhHhcccchHHHHHHH
Q 007134 451 V--LLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 451 ~--~l~~~y~~~g~~~~a~~~~~ 471 (616)
. ..+++|... ..++|.+++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 3 334456554 4677777764
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.19 E-value=1.5 Score=45.69 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHcCCHHHHHHHHHH-HHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKE-MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
....++++++.++.+. -.-..+ | ..-...++.-+.+.|..+.|+++-..-.. -.+...+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 3445666666555541 111111 1 23355566666667777776655433322 134455677777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 399 ~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|.++.++.. +...|..|.......|+++.|++.+++. ..+..|.-+|.-.|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776665543 5667777777777777777777777663 245556666666776666666555554443
No 255
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=17 Score=39.82 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHH
Q 007134 214 SVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
.|+.-|...+++..|++++-..++
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377778888888888888777653
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.94 E-value=0.74 Score=43.47 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=76.2
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------
Q 007134 197 ACKVFELMS--ERDLVAWNSVINGFASN-----GKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL------------ 257 (616)
Q Consensus 197 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 257 (616)
.++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..+|+.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 56777777777766543 44555566677888888888888888888765432
Q ss_pred ----CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 007134 258 ----GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII-IAAQRVFREMR 306 (616)
Q Consensus 258 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~ 306 (616)
.+-+-+..++++|...|+.||-.+-..|++++++.|.. .+..++.-.|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 24456778888888899999988888888888877653 33344433343
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=8.4 Score=37.10 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
.....+++..+..++..+.... +.+..+.-.|...|...|+.+.|..+++.++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3445566666666666665543 22344445566666666666666666666654
No 258
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.48 E-value=20 Score=39.59 Aligned_cols=116 Identities=11% Similarity=-0.027 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHhC-CCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 007134 323 NGFGKEALELFKEMEIG-GFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (616)
..+.+.|..++...... +..++. .....+.......+...++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34568888888877443 333332 22333333333332256666666655431 1234444444555558889998
Q ss_pred HHHHHHhCCC--CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 400 AYEYIQNMLM--PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 400 A~~~~~~m~~--~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+...|..|+. .-...-.-=+..+....|+.++|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888852 11222222355566668999999999988743
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.45 E-value=9.8 Score=35.92 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 189 AAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4667777777777777542 1223344556677777888888777777654
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=1.5 Score=41.52 Aligned_cols=85 Identities=19% Similarity=0.095 Sum_probs=38.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCc--CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHH
Q 007134 322 VNGFGKEALELFKEMEIGGFV--PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 398 (616)
+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.++++-.|. .+.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555543210 00122333555555555555555555555554433333 233334444444444444
Q ss_pred HHHHHHHh
Q 007134 399 QAYEYIQN 406 (616)
Q Consensus 399 ~A~~~~~~ 406 (616)
+|...+++
T Consensus 233 ~A~atl~q 240 (262)
T COG1729 233 EACATLQQ 240 (262)
T ss_pred HHHHHHHH
Confidence 44444433
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.11 E-value=13 Score=36.40 Aligned_cols=18 Identities=6% Similarity=-0.403 Sum_probs=11.5
Q ss_pred HHHHcCCcHHHHHHHHHH
Q 007134 422 ACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~ 439 (616)
.+.+.++++.|.+.++..
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 445666777777776654
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.75 E-value=0.43 Score=42.65 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCC-----cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 390 LLGRAGLVKQAYEYIQNML--MPP-----NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~--~~p-----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
-+.+.|++++|..-|.+.. .++ -.+.|..-..+..+.+..+.|+....++++++|.+..+....+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3567777777777765541 111 234555666677889999999999999999999877777788889999999
Q ss_pred chHHHHHHHHHhhCC
Q 007134 463 WLNVQEVRRTMVKER 477 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~ 477 (616)
+++|..-++++.+.+
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987754
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.53 E-value=1.2 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=57.2
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHHcC
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPP--NAVIWRTLLGACTIHG 427 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--d~~~~~~ll~a~~~~g 427 (616)
+.+..|+++.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +-+- --..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34566777777777776654 23344666777777777777777777666554 1110 1123444445678888
Q ss_pred CcHHHHHHHHHHHhcCCC
Q 007134 428 HSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~ 445 (616)
+.+.|..-|+.+.+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888766644
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.43 E-value=17 Score=36.64 Aligned_cols=149 Identities=9% Similarity=-0.086 Sum_probs=75.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC---CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh-hCCCCChhh
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-YGIMPKIEH 383 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 383 (616)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345677888888888888888888888877643111 1122222333444577778888877777652 111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCcHHHHHHHHHHHHHc------CCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 384 FGCMVDLLGRAGLVKQAYEY-IQNMLMPPNAVIWRTLLGACTIH------GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~-~~~m~~~pd~~~~~~ll~a~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...++++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333333333 778889999999999998866666666555
Q ss_pred hH
Q 007134 457 YA 458 (616)
Q Consensus 457 y~ 458 (616)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 43
No 265
>PRK15331 chaperone protein SicA; Provisional
Probab=91.40 E-value=2.4 Score=37.07 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=35.1
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+-+.|++++|..+|+-+...+. -|..-+..+...+-..+++++|...|......+. .|....--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3445555555555555544321 1111222222333334455555555544433321 1222222334444445555555
Q ss_pred HHHHHhc
Q 007134 299 QRVFREM 305 (616)
Q Consensus 299 ~~~f~~m 305 (616)
...|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
No 266
>PRK09687 putative lyase; Provisional
Probab=91.09 E-value=16 Score=35.65 Aligned_cols=133 Identities=13% Similarity=0.004 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-FGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44455555555555555333333333333344433333344444332 13344444444443 234444455555555
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLG 421 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~ 421 (616)
+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++- -.||..+-...+.
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 55553 333333333221 22 123444555555553 3444444442 2344444333333
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.74 E-value=15 Score=34.71 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h---hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRN---A---VSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGV 351 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~l 351 (616)
...|+--++ -.+.|++++|.+.|+.+..+. . .+--.++-++-+.+++++|+..+++.... +-.|| .-|...
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 344443333 345677777877777776431 1 22333455666677777777777777654 22333 233333
Q ss_pred HHHHhc-------CCCh---HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHH--HHHHH
Q 007134 352 LYACSH-------CGMV---DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV--IWRTL 419 (616)
Q Consensus 352 l~a~~~-------~g~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~--~~~~l 419 (616)
|.+.+. ..+. ..|..-|+.+..++ |+.. -..+|..-+.... |.. -=..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHH
Confidence 333332 1222 22333333333322 2211 0011111000000 000 01234
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCC---chhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSG---DYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..-|.+.|.+.-|..-++++++.-|+.+. .+..+..+|...|..++|.+.-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 45678888898999999999887666443 3456778888999999999888777543
No 268
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.63 E-value=0.29 Score=47.28 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=78.6
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CcHHHHHHHHHHHHHcCCc
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP-PNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~ll~a~~~~g~~ 429 (616)
+-|.++|.+++|++.|.... ...| +.+.+..-..+|.+..++..|+.-..... +. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35889999999999998776 3446 78888888889999999988876665542 11 1234566666666778899
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHH
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
.+|.+-++.+++++|++.. |-..|+......|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999998433 44444444444444433
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=15 Score=34.30 Aligned_cols=83 Identities=13% Similarity=-0.013 Sum_probs=36.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCCchhhhh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML-------MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQL----EPKHSGDYVLLS 454 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~-------~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 454 (616)
....|.+..++++|-..|.+-+ --|+. ..+.+.|-.+....|+..|+..++.-.++ .|++..+...|.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3344555555655554443331 11222 23334444444455666666666654322 222233333333
Q ss_pred HHhHhcccchHHHHHH
Q 007134 455 NLYAYEQRWLNVQEVR 470 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~ 470 (616)
.+| ..|+.+++.++.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 333 345555555443
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.35 E-value=9.8 Score=31.91 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
.+.-+..+...|+-++-.++++++.+. -.|+......+..||.+.|+..++.+++.++.++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556667777777777777776642 3566666677777777888877777777777664
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.13 E-value=5.1 Score=41.37 Aligned_cols=59 Identities=19% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|...+.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555666677777777777777665554 233445666677777777777777666543
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=2.5 Score=41.03 Aligned_cols=156 Identities=9% Similarity=-0.040 Sum_probs=113.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH----HHHHHHHhcCCH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG----CMVDLLGRAGLV 397 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 397 (616)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888998999998875 455667777778899999999999999998875 3356654443 334456689999
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCchhhhhHHhHhcccchHHHHHHH
Q 007134 398 KQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK----HSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 398 ~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
++|++.-++. .+.| |.-.-.++...+-..|+..++.+...+--..-.. -...|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999876 4555 6666677778888999999999987765322211 12345566667778899999999997
Q ss_pred HHhhCCCcc
Q 007134 472 TMVKERVKK 480 (616)
Q Consensus 472 ~m~~~~~~~ 480 (616)
.=.-+.+.+
T Consensus 272 ~ei~k~l~k 280 (491)
T KOG2610|consen 272 REIWKRLEK 280 (491)
T ss_pred HHHHHHhhc
Confidence 654333433
No 273
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.08 E-value=0.02 Score=49.80 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (616)
++..+.+.+.++....+++.+.+.+...+..+.+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666667777777777666556677778888888887766666666663222 2234455556666666666
Q ss_pred HHHHHHHH
Q 007134 330 LELFKEME 337 (616)
Q Consensus 330 ~~l~~~m~ 337 (616)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66665543
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.04 E-value=11 Score=37.11 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCC--hHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGM--VDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+.+..+|+.+.+.|+..+. ...+.+|..+..... +..+..+++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777776665543 333344433332222 34677777777765 7777777766554
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.97 E-value=25 Score=36.00 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHH-HHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIW-RTLLGA 422 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~-~~ll~a 422 (616)
..|...+++..+..-++.|..+|-...+. + +.+++..+++++.-+ ..|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44566777777888889999999988776 5 567888888888755 467778888888643 344555433 445555
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...++-+.|..+|+..++.-.+ -...|..++.--..-|+...+..+-+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66777888888888865422111 133555566555666777666666666554
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.66 E-value=22 Score=35.94 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK----HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+|..+...+++.|.++.|...+.++.+.++. .+.....-+......|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999875532 345566678888899999999999888776
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.46 E-value=0.58 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887774
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.32 E-value=33 Score=36.49 Aligned_cols=379 Identities=14% Similarity=0.085 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007134 76 PDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNIF-TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 76 ~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
...|+.||.---... +.+.++.+++.+.. |... -|-.....=.+.|..+.+.++|++-++. ++-+...|...+.-
T Consensus 45 f~~wt~li~~~~~~~-~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIE-DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchh-HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 345666664333333 56667777776653 4333 3555555556778888999999988763 55455555554444
Q ss_pred HH-cCCCcHHHHHHHHHHHHh-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh---C----
Q 007134 153 IS-KLADVRMGEQTHSVAIRN-GFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS---N---- 222 (616)
Q Consensus 153 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~---- 222 (616)
+. ..|+.+..+..|+.++.. |.. .....|...|.--..+++......+++++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 33 456777788888887764 321 2344567777777778889999999998877555555555544443 2
Q ss_pred --CCccHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHh-cCchHHHH-------HHHH-----------------HHH
Q 007134 223 --GKPNEALTLFREMASE----GVEPDGYTMVSLFSACAE-LGALALGR-------RAHT-----------------YVW 271 (616)
Q Consensus 223 --g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~-------~~~~-----------------~~~ 271 (616)
...+++.++=...... -..+.......-+.-... .+.++... .++. .-+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2233444433322221 001111111111111100 01111111 1111 111
Q ss_pred HhC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 272 KVG-------LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 272 ~~g-------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++. ..++..+|..-++.-.+.|+.+.+.-+|++...+- ...|--.+.-.-..|+.+-|-.++..-.+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 110 01245566666777777777777777777765441 22343333333334776666666555443222
Q ss_pred --cCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCcHH
Q 007134 342 --VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAY---EYIQNM-LMPPNAV 414 (616)
Q Consensus 342 --~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~pd~~ 414 (616)
.|....+.+.+ +-..|+.+.|..+++.+.+++ |+ +..-..-+....+.|..+.+. +++... ..+-+..
T Consensus 363 k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 363 KKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred CCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 23333333333 445789999999999998753 55 333344556677888888887 444433 1222322
Q ss_pred HHHHHHH-----HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 415 IWRTLLG-----ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 415 ~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3332222 2355678899999999999999988877887777766554
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.15 E-value=2.9 Score=40.33 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCcCCHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEI-----GGFVPGEVTFVG 350 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 350 (616)
..++..++..+..+|+.+.+.+.+++.... |...|..+|.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778888999999999999999887653 677899999999999999999999998865 478887766655
Q ss_pred HHHH
Q 007134 351 VLYA 354 (616)
Q Consensus 351 ll~a 354 (616)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.82 E-value=3 Score=40.20 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMAS-----EGVEPDGYTMVS 249 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 249 (616)
..++..++..+..+|+++.+.+.+++..+ -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34677889999999999999999998765 3677899999999999999999999998865 467776665544
Q ss_pred HHHH
Q 007134 250 LFSA 253 (616)
Q Consensus 250 ll~a 253 (616)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=13 Score=40.83 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNV--NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 323 (616)
+....|....+...++.|..+-. ..+.+++. .+.....+-+.+.|+.++|...|-+...--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34455566666666666655432 23333221 22233344455677888777766554322111 1245555555
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
.+..+-..+++.+.+.|+. +...-..||.+|.+.++.+.-.++.+.-.+ |.. ..-....+..+.+.+-+++|.-+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666777777777754 333445677788888887776665554321 211 11133456667777777777777
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 404 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
-.+... +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 666543 223333332 4556777777776643
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.39 E-value=7.9 Score=34.11 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRK 307 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (616)
.-.+|.-+-.|.|++.+|.+.|..+..
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334444445555666666665555543
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.82 E-value=10 Score=37.22 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHH
Q 007134 126 LAVELYSKMHVSGIKPDTHTYPF 148 (616)
Q Consensus 126 ~A~~l~~~m~~~g~~pd~~t~~~ 148 (616)
+.+.+++.|.+.|.+-+.++|.+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 44455566666666655555544
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.81 E-value=0.99 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 007134 110 TWNTMIRGYAESANPLLAVELYSKMH 135 (616)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~l~~~m~ 135 (616)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887754
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.80 E-value=11 Score=37.30 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------hhcCCC--ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC-CCCC---CHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVF-------ELMSER--DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEP---DGYT 246 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t 246 (616)
++..+.++.++.|.+++++..- .+..+. -..+|-.+..++-+.-++.+++.+-+.-... |..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555666666666666654321 111111 1235556666666666666666665443321 2222 1123
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCChh---
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGL-----SDNVNVNNALLDFYSKCGIIIAAQRVFREM-------RKRNAV--- 311 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m-------~~~~~~--- 311 (616)
..++..|....+.++++.+.|+.+.+... .....++-+|...|.+..++++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34566777778888888888887766321 223577888888999988888876544432 222322
Q ss_pred ---hHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 312 ---SWSTLVVGLAVNGFGKEALELFKEMEI----GGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 312 ---~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.-.|..++...|....|.+.-++..+ .|-+|-. .....+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223355667777877777777766543 3433322 234455566777888888777666653
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=24 Score=33.08 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHH
Q 007134 212 WNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
|+--+..|..+|.++-|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 444555666666666555554443
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.60 E-value=0.86 Score=28.49 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 416 WRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666643
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.01 E-value=28 Score=33.02 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=107.6
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----CCCCchhHH
Q 007134 213 NSVINGFASNGKPNEALTLFREMAS---EGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKV-----GLSDNVNVN 282 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~ 282 (616)
-.+|..+.+.|++++.+..|.+|+. ..+. -.....++++.-.+...+.+.-..+++.-.+. +-..--.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455555566666666655555532 1111 12334555555555455555444444432221 111112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKR---------------NAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEV 346 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 346 (616)
+-|...|...|.+.+-.+++.++... -...|..=|..|....+-.+...++++...- ...|..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP- 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP- 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-
Confidence 45666777777777777777666421 1235666677888777777777777766432 223433
Q ss_pred HHHHHHHHHh-----cCCChHHHHHHHHHhHHhhCCC--CChh---hHHHHHHHHHhcCCHHHHHHHHHhC---C--CCC
Q 007134 347 TFVGVLYACS-----HCGMVDEGFSYFKRMKDEYGIM--PKIE---HFGCMVDLLGRAGLVKQAYEYIQNM---L--MPP 411 (616)
Q Consensus 347 t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~~~---~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p 411 (616)
....+|+-|. +.|.+++|..-|-+.-+.|.-. |... -|..|..++.+.|- .-|+.- | -.|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 3345566554 4677887765444443433222 2222 24555666666651 122111 2 234
Q ss_pred cHHHHHHHHHHHHHc
Q 007134 412 NAVIWRTLLGACTIH 426 (616)
Q Consensus 412 d~~~~~~ll~a~~~~ 426 (616)
.......|+.+|..+
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 556777888887654
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.95 E-value=18 Score=31.62 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~ 430 (616)
-.+.++.+++..+++.+.- +.|. ..++. .-.+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3456677777777777753 3344 33333 234667788888888888774 2344444456666665555545
Q ss_pred HHHHHHHHHHhcCCC
Q 007134 431 IAEIARSTLLQLEPK 445 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~ 445 (616)
.-....+++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555556666665553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.64 E-value=2.9 Score=36.45 Aligned_cols=69 Identities=14% Similarity=-0.019 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHhCC-CCCcHHHHHHH-HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 393 RAGLVKQAYEYIQNML-MPPNAVIWRTL-LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~-~~pd~~~~~~l-l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+.++.+++..++..+. .+|.......+ ..-+...|++.+|.++++.+.+-.|..+..-..++.++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 4455555555555552 33432221111 122345555555555555554444443333334444443333
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.44 E-value=7.5 Score=34.95 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRN------AVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..+..+.+.|.+.|+++.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677788888888888888888877542 23455667777777787777777766543
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.22 E-value=35 Score=33.30 Aligned_cols=17 Identities=18% Similarity=0.009 Sum_probs=11.1
Q ss_pred HHHHcCCHHHHHHHHHH
Q 007134 319 GLAVNGFGKEALELFKE 335 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~ 335 (616)
.+.+.+++++|.+.|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34456777777777763
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=37 Score=33.43 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=95.4
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV---GLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+|+..+|-..++++++. .+.|...+...=.+|...|+.+.-+..++++... +++....+...+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 56777777777777664 4556667777777888888888877777777654 2333344444555566788999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---C-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 299 QRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIG---G-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
++.-++..+- |..+-.+....+-.+|+..++.++..+-... + +... ..|-...-.+...+.++.|+.+|+.-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas-HNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS-HNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh-hhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9888877654 4445556667777788999998887664321 0 0011 11111222334558889999888764
Q ss_pred H
Q 007134 372 K 372 (616)
Q Consensus 372 ~ 372 (616)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.89 E-value=1.1e+02 Score=38.59 Aligned_cols=310 Identities=12% Similarity=0.030 Sum_probs=166.2
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhCCCcc
Q 007134 150 LKAISKLADVRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDACKVFEL-MSERDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 226 (616)
..+--+.+.+..|...++.-..... ......+..+...|+.-+++|...-+... ...++ ...-|.-....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 3344556677777777766311000 11223344455588888888887776663 33333 233455566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.|...|+.+.+.+ ++...+++.++......+.++...-..+-.... ..+....+ +.=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 9999999998764 333667887777777777777666544433332 22233333 333444456677776666655
Q ss_pred CCCChhhHHHH-H-HHHHHcC--CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH----------h
Q 007134 306 RKRNAVSWSTL-V-VGLAVNG--FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR----------M 371 (616)
Q Consensus 306 ~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------m 371 (616)
.++..+|.+. + ..+.+.. +.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-. .
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655 2 2222221 1111122333333221111 2223332222222111111 1
Q ss_pred HHhhCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCc-----HHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 372 KDEYGIMPKI------EHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPN-----AVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 372 ~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
....+..++. ..|..-+..=....+..+-+--+++. ..+|+ ..+|-.....++..|.++.|....
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111222321 12222222111111122221111111 12322 368889999999999999999988
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
-.+.+.. -+..+.-.+......|+-..|..+++...+..
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8876655 36788899999999999999999998887654
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=30 Score=32.23 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=33.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCC-----CCCcHHHHHHHHH---HHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 386 CMVDLLGRA-GLVKQAYEYIQNML-----MPPNAVIWRTLLG---ACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 386 ~li~~~~~~-g~~~~A~~~~~~m~-----~~pd~~~~~~ll~---a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.+...|..- .++++|+..++..+ -+.+...-..++. --...+++.+|+.+|+++.....++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444433 45666666665552 1222223333333 2367788999999999886544443
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.63 E-value=20 Score=32.25 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh------h
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI------E 382 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 382 (616)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....+.........|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35677889999999999999999999887555554 446677888888999999988888776531111111 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..+. +...+++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 233332 34578899998888665
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.47 E-value=5.2 Score=31.70 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 345666677777778999999999999999999999999999999988544 33447777764
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.27 E-value=1.6 Score=26.93 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 167 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
+++++.. |.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556777777777788888777775
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.99 E-value=4.5 Score=34.65 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=40.7
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..++.+++..++..+.-+.|+.+..-..-+.++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777778888877777788877777777778888888888888888776554
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.98 E-value=5.7 Score=31.14 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999999886433 24456766653
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.19 E-value=2.4 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777665
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.10 E-value=73 Score=35.17 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCc-------hHHHHHHHHHHHCC
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANP-------LLAVELYSKMHVSG 138 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g 138 (616)
-+| ++|-.+-+|| .+++|.++-.... .+....+-..+..|+.+.+. ++...-|++..+..
T Consensus 113 p~W-a~Iyy~LR~G-~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRCG-DYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTTT--HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhcC-CHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 355 4566666898 8999999983322 34445667777777665332 24455566655443
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.07 E-value=35 Score=31.45 Aligned_cols=160 Identities=13% Similarity=0.005 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+..||-+.--+...|+++.|.+.|+...+.. |. ..++..-.-++.-.|++..|.+-|...-+.-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777777777778888888877776643 32 22222222234456777777665554433212222233333322
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-------CCchhhhhHHhHhcc
Q 007134 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-------SGDYVLLSNLYAYEQ 461 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 461 (616)
.+.=++.+|..-+.+--...|..-|...|-.+---.-.+ +.+++++.....++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 223345555443322212234445554443332211111 12233332222221 346778888889999
Q ss_pred cchHHHHHHHHHhhC
Q 007134 462 RWLNVQEVRRTMVKE 476 (616)
Q Consensus 462 ~~~~a~~~~~~m~~~ 476 (616)
..++|..+|+.....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999877653
No 304
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.79 E-value=3.6 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+|..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555666666666666666666655
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.79 E-value=31 Score=30.59 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChh--hH---HHH--HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 288 FYSKCGIIIAAQRVFREMRKRNAV--SW---STL--VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~~~--~~---~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.....|+...|...|+++...+.+ .. ..| .-.+..+|-+++.....+.+-..+-.--...-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 345567777777777766532211 11 111 12345677777777777766655433333444455566677888
Q ss_pred hHHHHHHHHHhHHh
Q 007134 361 VDEGFSYFKRMKDE 374 (616)
Q Consensus 361 ~~~a~~~~~~m~~~ 374 (616)
+..|.+.|..+..+
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 88888888887765
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.75 E-value=28 Score=30.03 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007134 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207 (616)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 207 (616)
.++++.+..+++.+.-.. +....+-..-.-.+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444555555554443321 111122222233345566666666666666543
No 307
>PRK09687 putative lyase; Provisional
Probab=82.70 E-value=50 Score=32.24 Aligned_cols=75 Identities=7% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
.++..+-...+.++++.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555666666666666433333333333333 233566677777774 577777777653 34555544445444
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.45 E-value=22 Score=28.20 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
.++|.-|-+.+...+- ....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556555555554431 233444444556788999999999999998899999988765 3567777777777777776
Q ss_pred CCCCCHHHHH
Q 007134 239 GVEPDGYTMV 248 (616)
Q Consensus 239 g~~p~~~t~~ 248 (616)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 45555553
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.48 E-value=38 Score=30.01 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 150 (616)
++...|..+|..+.+.|++. .+.++++.++-+|.......+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 44445666666666665543 234444455555555544444
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.37 E-value=96 Score=34.61 Aligned_cols=76 Identities=7% Similarity=-0.012 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCCCchhhhhHHhHhccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ-LEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~ 462 (616)
-++..+.+..+.+.+..+.+..+-. |+..|..+++.+.+.+.++.-.+...++++ +....--.-..+.+++++.+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 3555677778888888888887743 778888899988888877766666665542 111122223455666666553
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=14 Score=35.78 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=72.0
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
.|.+....+...++..-....+++++...+-++... ...+|-.++ ..-++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 355556666666777667777888888877776532 233333332 3346778888888888889999
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
|..|++.++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776653
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.01 E-value=7.5 Score=38.03 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=59.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
..-|.++|.+++|++.|.+-+. +.| |.+++..-..+|.+...+..|+.-...... .| ...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999998776 566 889999999999999888877765555543 11 23445555554
Q ss_pred -------CHHHHHHHHHhC-CCCCcH
Q 007134 396 -------LVKQAYEYIQNM-LMPPNA 413 (616)
Q Consensus 396 -------~~~~A~~~~~~m-~~~pd~ 413 (616)
...+|.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 444544444333 366763
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=23 Score=37.63 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHH
Q 007134 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (616)
.|+++.|..++..++++ .-+.++.-+-+.|..++|++
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~ 635 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE 635 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhh
Confidence 35555555555444421 23334444445555555544
No 314
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.46 E-value=19 Score=30.33 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHc---CCcHHHHHHHHHHHh-cCCCCCCc-hhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIH---GHSAIAEIARSTLLQ-LEPKHSGD-YVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~---g~~~~a~~~~~~~~~-~~p~~~~~-~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+--.+..++... .++.+++.+++.+++ -.|..... ...|+-.+.+.|+++.+.++.+...+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444433 356778888888876 44443333 33567778888899999888887765
No 315
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.44 E-value=1.2e+02 Score=35.26 Aligned_cols=222 Identities=10% Similarity=-0.051 Sum_probs=99.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 199 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
.+...+..+|...--..+..+.+.+. .+++..+.+.... +|...-...+.++...+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 34444445555555555555555554 3344444444432 2333333444444333221111122222222 134
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 45555555555443311 12234445555565555555555555544322 112221 33444444444555554
Q ss_pred CChHH-HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHH
Q 007134 359 GMVDE-GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437 (616)
Q Consensus 359 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 437 (616)
+..+. +...+..+.++ +|...-...+.++++.|..+.+...+..+...+|..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~D----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTGD----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhcC----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 44332 23333344332 55666666667777776654443333333334555555555556655554 33444444
Q ss_pred HHH
Q 007134 438 TLL 440 (616)
Q Consensus 438 ~~~ 440 (616)
.++
T Consensus 845 ~~L 847 (897)
T PRK13800 845 EAL 847 (897)
T ss_pred HHh
Confidence 444
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=80.29 E-value=73 Score=32.58 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHhcCCC----ChhhHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCcCC----HHHHHHHHHHHhcCCChH
Q 007134 292 CGIIIAAQRVFREMRKR----NAVSWSTLVVGLA-VNGFGKEALELFKEMEIGGFVPG----EVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 362 (616)
.|+.++|.+.+..+... ....+-+|+.+-. ...++.+|+++|++..-. -|. +....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57778888888777643 3445666665544 456789999999987652 343 233444445567889999
Q ss_pred HHHHHHHHhHHhhCCCCChhhH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHF-GCMVDLLGRA---GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
++..+-.+...+|.-.|-...| ..++..+.+. ...+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888777777766555553333 2333333333 33445556666664222346888888888999999999999999
Q ss_pred HHhcCCCCCCchhhhhHHhHh-----cccchHHHHHHHHHh
Q 007134 439 LLQLEPKHSGDYVLLSNLYAY-----EQRWLNVQEVRRTMV 474 (616)
Q Consensus 439 ~~~~~p~~~~~~~~l~~~y~~-----~g~~~~a~~~~~~m~ 474 (616)
+..+... ...-...+.+|.. ..+.+++.+.++.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9887744 4444455666643 345666666665543
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.86 E-value=7.7 Score=26.81 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=34.7
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGY 525 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 525 (616)
..++-++.+.|++++|.+..+.+.+. .|...++......+.++|.+.|+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 45777889999999999999988652 34445556655566778877774
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.65 E-value=0.86 Score=39.34 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=53.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHH
Q 007134 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 228 (616)
++..+.+.+.++...++++.+++.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777788887766566677888888888888777777777764332 2233455555556666666
Q ss_pred HHHHHHH
Q 007134 229 LTLFREM 235 (616)
Q Consensus 229 ~~~~~~m 235 (616)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.73 E-value=34 Score=27.22 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345566665555544421 22222223345667899999999999998899999987755 356777777777777877
Q ss_pred CCCcCCHHHHHH
Q 007134 339 GGFVPGEVTFVG 350 (616)
Q Consensus 339 ~g~~p~~~t~~~ 350 (616)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.51 E-value=4 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=15.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666555554
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.20 E-value=5.7 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666666666666666666654
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.80 E-value=5.2 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+|..+...+...|+++.|...+++.++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666666666666666666665553
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.65 E-value=5.3 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777777777888887777777654
No 324
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.49 E-value=64 Score=29.30 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=56.0
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC-----MVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~ 426 (616)
..+..++++++|...++..... |.-..+.. |.......|.+++|+..++...-+. .......-...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 4556678888888777766532 33333333 3456677888888888887653110 122223334577888
Q ss_pred CCcHHHHHHHHHHHhcCCC
Q 007134 427 GHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~ 445 (616)
|+-++|+..++++++.++.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GDKQEARAAYEKALESDAS 191 (207)
T ss_pred CchHHHHHHHHHHHHccCC
Confidence 8888888888888777644
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.09 E-value=30 Score=31.57 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN---GFESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 125 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
++|++.|-++...+.- +....-..+..+-...|.+++++++-.+++. +-.+|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666555433 2233333333333455666666666665543 12455666666666666666666653
No 326
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.07 E-value=6.6 Score=40.35 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=67.3
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCcHHHHHH-HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHH
Q 007134 390 LLGRAGLVKQAYEYIQNM-LMPPNAVIWRT-LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 467 (616)
-+...+.++.|..++.+. ...||-..|-+ -..++.+.+++..|..-+.++++++|.....|+.-+.++.+.+.+.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 345667778888877665 46775544333 3367888899999999999999999998889999999999999999999
Q ss_pred HHHHHHhh
Q 007134 468 EVRRTMVK 475 (616)
Q Consensus 468 ~~~~~m~~ 475 (616)
..++....
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 98886643
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.96 E-value=1.3e+02 Score=32.70 Aligned_cols=270 Identities=11% Similarity=0.040 Sum_probs=126.2
Q ss_pred HHHHHHHHhhcCCC-ChhHHHHHHH----H-HHhCCCccHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 007134 194 VKDACKVFELMSER-DLVAWNSVIN----G-FASNGKPNEALTLFREMAS-------EGVEPDGYTMVSLFSACAELG-- 258 (616)
Q Consensus 194 ~~~A~~~f~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~~-- 258 (616)
...|.+.++...+. ++..-..+.. + +....+.+.|+..|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666555432 3332222222 2 3445667777777776655 33 2223344444554432
Q ss_pred ---chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHH----cCCHHHH
Q 007134 259 ---ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-CGIIIAAQRVFREMRKR-NAVSWSTLVVGLAV----NGFGKEA 329 (616)
Q Consensus 259 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A 329 (616)
+.+.|..++....+.|. |+....-..+..... -.+...|.++|....+. .+.+.-.+...|.. ..+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 44557777777666663 333333222222222 23456777777766543 23332222222221 2356777
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHH-HHHH-----Hh--cCCHHHHH
Q 007134 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM-VDLL-----GR--AGLVKQAY 401 (616)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~-----~~--~g~~~~A~ 401 (616)
..++++.-+.| .|-..--...+..+.. +..+.+.-.+..+..- +.+-- .+-..+ ++.. .+ ..+.+.+.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~-q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVA-QSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHH-hhHHHHHHHhccccccccccccchhHHH
Confidence 77777777766 3332222233333333 5555555554444331 22111 111111 1000 00 12445555
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHH
Q 007134 402 EYIQNMLMPPNAVIWRTLLGACTIH----GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTM 473 (616)
Q Consensus 402 ~~~~~m~~~pd~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m 473 (616)
.++.+....-+......|...+... .+.+.|...+.++.... ......++.++.. .. +..|.++++..
T Consensus 460 ~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~ 535 (552)
T KOG1550|consen 460 SLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHH
Confidence 5555554333444444444444222 24666666666665443 4445556666642 23 57777777766
Q ss_pred hh
Q 007134 474 VK 475 (616)
Q Consensus 474 ~~ 475 (616)
.+
T Consensus 536 ~~ 537 (552)
T KOG1550|consen 536 SE 537 (552)
T ss_pred Hh
Confidence 54
No 328
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.92 E-value=2.5 Score=41.28 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHH
Q 007134 393 RAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
..|.+++|++.|... ...| ....|..-.+++.+.++...|++-+..+++++|+....|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456688888887554 3444 44666666677788888888888888888999988888888888888889999999988
Q ss_pred HHHhhCCCccC
Q 007134 471 RTMVKERVKKT 481 (616)
Q Consensus 471 ~~m~~~~~~~~ 481 (616)
....+.+....
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88887776543
No 329
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.59 E-value=1.2e+02 Score=31.95 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=73.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
.-+++..+.++-.+.-...+..+|..-| -+...|..++..|... ..++-..+++++++..+. |++...-|.+.|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3344555555555555555555555432 3444555555555544 344444555555554432 33344444444444
Q ss_pred cCCHHHHHHHHHhcCCC------Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHHHHHHHhcCCCh
Q 007134 292 CGIIIAAQRVFREMRKR------NA---VSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSHCGMV 361 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~ 361 (616)
++.+++...|..+..+ +. ..|.-++..- ..+.+..+.+..+.+.. |..--.+.+--+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 5555555555544321 11 1344443211 23445555555555432 3333334444444556666666
Q ss_pred HHHHHHHHHhHH
Q 007134 362 DEGFSYFKRMKD 373 (616)
Q Consensus 362 ~~a~~~~~~m~~ 373 (616)
++|.+++..+.+
T Consensus 222 ~eai~Ilk~il~ 233 (711)
T COG1747 222 TEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHhh
Confidence 666666665544
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.56 E-value=26 Score=34.09 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=68.7
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-----hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH
Q 007134 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDL-----VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (616)
.|.+....+...++..-....+++++...+-++.. ++. .+-.+.+.-+ -.-++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666667788888877766653 110 1111222222 2345778888888888888888999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
|+..+++.+.+.++...|.++...++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99888888888888888888877776553
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.41 E-value=17 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
+++|+.-+++++.++|+...++..++++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777788889999988899999999976553
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.34 E-value=6.4 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+++.|...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555543
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.19 E-value=8.1 Score=37.00 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+++.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--+|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556889999999999999999999999999999999999999998888888877753
No 334
>PRK10941 hypothetical protein; Provisional
Probab=73.89 E-value=10 Score=36.57 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++.-.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3456667889999999999999999999999888888889999999999999998887755
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.77 E-value=6.6 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 007134 181 QNSLVHMYAAFGHVKDACKVFE 202 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~ 202 (616)
...|...+...|+.++|+++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666677777777776664
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.23 E-value=25 Score=36.16 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=73.2
Q ss_pred cCCHHHHH-HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 007134 323 NGFGKEAL-ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 323 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
.|+.-.|- ++|.-+....-.|+.+-..+.| ..+.|+++.+.+.+..... -+.....+-.+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45544443 3444455444456665555554 4567888888777776654 34455666777888888888888888
Q ss_pred HHHHhCC---CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 402 EYIQNML---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 402 ~~~~~m~---~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+-..|. ++ +..+...-.......|-++++.-.+++++.++|.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7777662 21 3333333333445667778888888888777665
No 337
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.08 E-value=5.2 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+.-++.+.|+++.|.+..+.+++++|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3556789999999999999999999998653
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.97 E-value=89 Score=29.82 Aligned_cols=177 Identities=10% Similarity=0.007 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC--cCCHHHHHHHHHHHhcCCC
Q 007134 293 GIIIAAQRVFREMRKR-------NAVSWSTLVVGLAVNGFGKEALELFKEMEI---GGF--VPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 293 g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~a~~~~g~ 360 (616)
.+.++|+.-|+++.+- ...+...||..+.+.|++++.++.+++|.. ..+ .-...+.++++...+-..+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3566666666665421 222334567777777777777777777653 111 1234556677766665555
Q ss_pred hHHHHHHHHHhHHhh----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCc-------HHHHHHHHHH
Q 007134 361 VDEGFSYFKRMKDEY----GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-------MPPN-------AVIWRTLLGA 422 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~pd-------~~~~~~ll~a 422 (616)
.+.-..+++.-.+.. +-..-..+-+.|...|...|.+.+..++++++. -.-| ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555544444332211 111112233456666777777777777776651 0111 2355555667
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchh------hhhHHhHhcccchHHHHH
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYV------LLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~------~l~~~y~~~g~~~~a~~~ 469 (616)
|...++-..-..++++++.+...-|.... +=+.++.+.|+|++|..-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 77777877888888887655433222211 223445567788877643
No 339
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.87 E-value=1.4e+02 Score=31.45 Aligned_cols=277 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHH------HHHHH
Q 007134 94 SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG------EQTHS 167 (616)
Q Consensus 94 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a------~~~~~ 167 (616)
+.|.+.|+-...-+...+..+-.++--..+-+....+|++..+ ..|+...+..-|..|...-....+ ..+++
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~ 345 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFR 345 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHh-hcCCCChhHHHHHHHHHHhC--CCccHHHHHHHHHHHCCCCC
Q 007134 168 VAIRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFE-LMSERDLVAWNSVINGFASN--GKPNEALTLFREMASEGVEP 242 (616)
Q Consensus 168 ~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p 242 (616)
...+.+ .+....-|..+.-++.+...-.++-..+. +.-..+...|-.-+....+. .---.-..+|......-..+
T Consensus 346 ~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~ 425 (568)
T KOG2396|consen 346 KAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSE 425 (568)
T ss_pred HHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcch
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007134 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 322 (616)
-...+++.. -...-+...-..++..+.+.+-+.....-+.+++.+-+.|-..+|.++|..+
T Consensus 426 ~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l----------------- 486 (568)
T KOG2396|consen 426 LLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSL----------------- 486 (568)
T ss_pred hHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHH-----------------
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
.--+.-.+.+|++|++ +..+..+.+ +..+..+++.|...+| .|+..|-..+..-...|..+.+-.
T Consensus 487 ~~lpp~sl~l~r~miq--~e~~~~sc~-----------l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~ 551 (568)
T KOG2396|consen 487 QELPPFSLDLFRKMIQ--FEKEQESCN-----------LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQ 551 (568)
T ss_pred HhCCCccHHHHHHHHH--HHhhHhhcC-----------chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccH
Q ss_pred HHHh
Q 007134 403 YIQN 406 (616)
Q Consensus 403 ~~~~ 406 (616)
++.+
T Consensus 552 ~~~r 555 (568)
T KOG2396|consen 552 IYWR 555 (568)
T ss_pred HHHH
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.67 E-value=29 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
++.+-++.+....+.|+.....+.|+||.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555666666778888888888888888888888888888665
No 341
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.20 E-value=75 Score=28.18 Aligned_cols=39 Identities=5% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 202 (616)
++.+.+.+.+++++..++..+++.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445556666766677777777666666555544443
No 342
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.66 E-value=1.2e+02 Score=31.62 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh---CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 211 AWNSVINGFAS---NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 211 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555555555 4788888888888888887776555555554544333
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.89 E-value=40 Score=30.75 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHhHHhhC--CCCChhhHHHHHHHHHhcCCHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYG--IMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
..+.+++..++....+-+. -.+|...+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444444444444433211 123444444555555555544444
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.16 E-value=9.9 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355555666666666666666666554
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.58 E-value=4.8 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.4
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+..++.+|.+.|++++|.+.++.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456889999999999999999998653
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.48 E-value=2e+02 Score=32.00 Aligned_cols=94 Identities=9% Similarity=-0.125 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCCCCCchhhhhHHhHhcccch
Q 007134 388 VDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL---EPKHSGDYVLLSNLYAYEQRWL 464 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~y~~~g~~~ 464 (616)
+..+...|+..+|...+..+....+......+.......|..+.+.....+.... .-..|..|......+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 3456677888888877766643345555555666667888888887776554221 1112445655666666555666
Q ss_pred HHHHHHHHHhhCCCccC
Q 007134 465 NVQEVRRTMVKERVKKT 481 (616)
Q Consensus 465 ~a~~~~~~m~~~~~~~~ 481 (616)
.+.-.--...|.++.+.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 65543333345565543
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.26 E-value=96 Score=32.18 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=87.4
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~ 433 (616)
...|++-.|-+-+.....++.-.|+..... ...+...|+++.+...+.... +.....+...++......|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 346777777655545545445556544333 334678899999999987662 3345567888899999999999999
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCc
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (616)
...+.++..+-.++......+-.--..|-++++...+++........+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999987776666655444444456788999999998886644433333
No 348
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.48 E-value=65 Score=26.02 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHH
Q 007134 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
....++|..|.+.+...+- ....+--.-+..+...|++++|+..=.....||...|-+|-. .+.|..+++..-+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888888777653 344455555667888999999955555556688888877654 5778888888888877
Q ss_pred HHCCCCCCHHHH
Q 007134 236 ASEGVEPDGYTM 247 (616)
Q Consensus 236 ~~~g~~p~~~t~ 247 (616)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6665 3444344
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.48 E-value=39 Score=26.99 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555566667788888888888888888888888888776543
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=66.24 E-value=1.1e+02 Score=29.84 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH-CCCCCCcchHHHHHHHHHc-CC-CcHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISK-LA-DVRMGEQTHSVAIRN-GFESLVFVQNSLVH 186 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~ 186 (616)
|..|+. ++....+|+.+|+..-- ..+--|......+++.... .+ .+..--++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 655553 23445678888874322 2355677777778877765 22 222233444444432 34677778888999
Q ss_pred HHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 187 MYAAFGHVKDACKVFELMS-----ERDLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
.+++.+++..-.++++... ..|...|..+|......|+..-..++..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 9999999999999998754 3578899999999999999765544443
No 351
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.04 E-value=2.7e+02 Score=32.57 Aligned_cols=93 Identities=12% Similarity=-0.073 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 277 DNVNVNNALLDFYSKCGIIIAAQ-RVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+ .|+...-...+.++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 45556666666666666544432 23333444454444455555555554 345555555553 34555555555565
Q ss_pred hcCCChHHHHHHHHHhHH
Q 007134 356 SHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~ 373 (616)
.+...-..+...+..+.+
T Consensus 863 ~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 863 TRWPGDPAARDALTTALT 880 (897)
T ss_pred hccCCCHHHHHHHHHHHh
Confidence 554333455555555544
No 352
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.63 E-value=1.1e+02 Score=31.20 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=50.7
Q ss_pred cHHHHHHH---HHHHHHcCCcHHHHHHHHHHHhcCCC-CCCchhhhhHHhH-hcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTL---LGACTIHGHSAIAEIARSTLLQLEPK-HSGDYVLLSNLYA-YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~l---l~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 475 (616)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55555554 45778899999999999999999999 7877778888885 77888888888876654
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.28 E-value=63 Score=34.52 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=63.3
Q ss_pred hCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
+.| +++.|..+-.+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-.
T Consensus 649 ~lg-rl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 649 KLG-RLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hcC-cHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 455 666666664333 4566788888888888888888888776543 4566666666777665555555
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
...+.|. . |.-..+|...|+++++.+++...
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555552 2 22334566777888877777554
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.13 E-value=58 Score=29.68 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+...++.|+.-++++++.+|.
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 33344566667777776655443 34442 233333345777888899999999999999987
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.95 E-value=88 Score=26.95 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC-chHHHHHHHHHHHCCCCCCcchHH
Q 007134 78 LGKYLIYAIVSLSFPMSYAHNIFSHVQD---------PNIFTWNTMIRGYAESAN-PLLAVELYSKMHVSGIKPDTHTYP 147 (616)
Q Consensus 78 ~~~~li~~y~~~~~~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~ 147 (616)
..|.++.-.+..+ ++.--+.+++.+.. .+-.+|++++.+.++... ---+..+|..|.+.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4577776666655 67777777766542 455678888888866655 345677888888877888888888
Q ss_pred HHHHHHHcC
Q 007134 148 FLLKAISKL 156 (616)
Q Consensus 148 ~ll~~~~~~ 156 (616)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887664
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.79 E-value=15 Score=34.33 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=29.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
+-.+.+.++++.+..--.+++++.|+.......++........+++|+..+.+.
T Consensus 51 alchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555544
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.32 E-value=2.7e+02 Score=30.76 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=84.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCC-------ccHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 007134 184 LVHMYAAFGHVKDACKVFELMS---ERDLVAWNSVINGFASNGK-------PNEALTLFREMASEGVEPDGY--TMVSLF 251 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--t~~~ll 251 (616)
+|--+.|+|++++|.++..... ++....+-..+..|+...+ -++...-|++........|.+ ..-.+|
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~il 196 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKIL 196 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 5556789999999999993332 2344566777777776533 234555566666554422443 334445
Q ss_pred HHHHhcCc--------hHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHH
Q 007134 252 SACAELGA--------LALGRRAHTYVWKVGLSD-----NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVV 318 (616)
Q Consensus 252 ~a~~~~~~--------~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 318 (616)
..|--... .|.-..+.=.+++..... +..++..|=+...+-| .+.|.. ..+...| ..
T Consensus 197 g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f~ 266 (613)
T PF04097_consen 197 GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---FQ 266 (613)
T ss_dssp HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---HH
T ss_pred hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---HH
Confidence 44432111 122121211222222111 1112221111111111 111111 1122222 34
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh---cC
Q 007134 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR---AG 395 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g 395 (616)
.+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-.+-.+... ..+.....-.|..-.+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 44667888888888876 2334556666666665443222222111 2121110111112456667777765 45
Q ss_pred CHHHHHHHHHhCC
Q 007134 396 LVKQAYEYIQNML 408 (616)
Q Consensus 396 ~~~~A~~~~~~m~ 408 (616)
+..+|.+++--+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 6777887776664
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.32 E-value=2.2e+02 Score=29.42 Aligned_cols=148 Identities=11% Similarity=-0.013 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcC
Q 007134 185 VHMYAAFGHVKDACKVFELMSER----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM--VSLFSACAELG 258 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~ 258 (616)
+...++.|+.+.+..+++.-... +..-++.+ ...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34445666666666666543211 11112222 222334443 344444555555443211 12333444555
Q ss_pred chHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh---HHHHHHHHHHcCCHHHHHHHH
Q 007134 259 ALALGRRAHTYVWKVGLSDNVN--VNNALLDFYSKCGIIIAAQRVFREMRKRNAVS---WSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~l~ 333 (616)
+.+.+..+ .+.|..++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 55544333 3344332211 11223334455666666655555443332221 123333334455543 34
Q ss_pred HHHHhCCCcCCH
Q 007134 334 KEMEIGGFVPGE 345 (616)
Q Consensus 334 ~~m~~~g~~p~~ 345 (616)
+-+.+.|..|+.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444555666553
No 359
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.08 E-value=1.5e+02 Score=27.47 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHH--HHhCCCccHHHHHHHHHHHCC
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV-AWNSVING--FASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g 239 (616)
-+.++|-|.--+...|+++.|.+.|+...+-|.. -|..+=+| +---|++.-|.+-|.+.-+.+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 3678888888888899999999999888765432 23222222 223577888887777665543
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.19 E-value=56 Score=27.22 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+..+-++.+..-.+.|+....-..|+||.+.+++..|..+|+-++.+. .+....|-.++ ++-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH---------HHHHHHHHHh
Confidence 455556666667789999999999999999999999999999998743 34444566665 3445666666
Q ss_pred CC
Q 007134 408 LM 409 (616)
Q Consensus 408 ~~ 409 (616)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 361
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.04 E-value=1.5e+02 Score=27.02 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-----HHHHHHcCCCcHHHHHHHHHHHHhCCCCc--HHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPF-----LLKAISKLADVRMGEQTHSVAIRNGFESL--VFVQ 181 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~ 181 (616)
..|..++...- .+.+ +.....+.+.... ...+|.. +.+.....++++.|..-+...+...-+.+ ..+-
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence 34555555543 3333 5555556665432 1233332 23456677888888887777664321111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 007134 182 NSLVHMYAAFGHVKDACKVFELMSERDLVA--WNSVINGFASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 182 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (616)
-.|.......|.+|+|++.++...+++-.+ -..-.+.+...|+-++|..-|.+.++.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334556677788888888887776654222 2222356777888888888887777664
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.55 E-value=1e+02 Score=24.95 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
...++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777777777776653 233333334455667888888855545555678888876644 46777888888887777
Q ss_pred hCCCcCCHHHHH
Q 007134 338 IGGFVPGEVTFV 349 (616)
Q Consensus 338 ~~g~~p~~~t~~ 349 (616)
.+| .|....|.
T Consensus 97 ~~g-~~~~q~Fa 107 (116)
T PF09477_consen 97 SSG-SPELQAFA 107 (116)
T ss_dssp T-S-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444443
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.98 E-value=3.1e+02 Score=30.32 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=78.1
Q ss_pred hhHHHHHHhhcCHHHHHHHHHHHHHhCCCC--CC--hHHHHHHHHHHHhCCCCHHHHHHHHhhCCC----CChhHHHH--
Q 007134 44 KCITLLQVCASSKHKLKQVHAFSIRHGVPL--NN--PDLGKYLIYAIVSLSFPMSYAHNIFSHVQD----PNIFTWNT-- 113 (616)
Q Consensus 44 ~~~~~l~ac~~~~~~~~~~h~~~~~~g~~~--~~--~~~~~~li~~y~~~~~~~~~A~~~f~~m~~----~~~~~~~~-- 113 (616)
.++.+|-.-..+.+.|+......+..--.+ .+ ......++..|.+.+ ...|.+..++..+ .....|..
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~--~~~a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN--PKAALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhccCchhHHHHH
Confidence 344444444456777777666654322110 01 112345566666665 4447777765332 11122222
Q ss_pred --H-HHHHHhcCCchHHHHHHHHHHHCC---CCCCcchHHHHHHHHH--cCCCcHHHHHHHHHHHHhCC---------CC
Q 007134 114 --M-IRGYAESANPLLAVELYSKMHVSG---IKPDTHTYPFLLKAIS--KLADVRMGEQTHSVAIRNGF---------ES 176 (616)
Q Consensus 114 --l-i~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~ 176 (616)
+ +..+...+++..|++.++.....- ..|-...+..++.+.. ..+..+.+.+..+.+..... .|
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 2 222223368888888887776532 1223334444555543 33445556666655533211 23
Q ss_pred cHHHHHHHHHHH--HhcCCHHHHHHHHhhc
Q 007134 177 LVFVQNSLVHMY--AAFGHVKDACKVFELM 204 (616)
Q Consensus 177 ~~~~~~~Li~~y--~~~g~~~~A~~~f~~~ 204 (616)
...++..+++.+ ...|+++.+...++++
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666644 4456666655554433
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.08 E-value=89 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 365
>PRK10941 hypothetical protein; Provisional
Probab=55.51 E-value=70 Score=30.96 Aligned_cols=66 Identities=12% Similarity=0.007 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+.+-.+|.+.++++.|+...+.+- +.| |..-+.--.-.|.+.|....|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 455667889999999999998873 566 456677777788999999999999999999999877543
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.44 E-value=1.8e+02 Score=29.85 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=34.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHH--HHHHHHHHHh--cCCChHHHHHHHHHhHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEV--TFVGVLYACS--HCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 373 (616)
+...+++..|.++|+++... +.++.. .+..+..+|. ..-+.++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888775 444443 3333444443 35667788888887765
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.14 E-value=1.4e+02 Score=28.81 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=57.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh--CCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH--
Q 007134 317 VVGLAVNGFGKEALELFKEMEI--GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG-- 392 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 392 (616)
|++++..+++.+++...-+--+ +.++|...-..+++ |++.+....+.++-....+. .-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 7788888888888776554433 23555554444444 77888888888777776654 22223445777776654
Q ss_pred ---hcCCHHHHHHHHHhC
Q 007134 393 ---RAGLVKQAYEYIQNM 407 (616)
Q Consensus 393 ---~~g~~~~A~~~~~~m 407 (616)
=.|.+++|++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468899998888433
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.76 E-value=34 Score=22.58 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=14.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGG 340 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g 340 (616)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455666666666666666665433
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.67 E-value=35 Score=36.19 Aligned_cols=93 Identities=17% Similarity=0.071 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCcHHHHHHHHHHHHHcCCcHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNM-L-MPPNAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~ 433 (616)
.|+...|...+..... ..|- -+..-.|...+.+.|...+|..++.+. . ....+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 5666666666655542 2232 223344556666667777777666443 2 2224456777777777788888888
Q ss_pred HHHHHHHhcCCCCCCchhhh
Q 007134 434 IARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l 453 (616)
+.++.+++++|+++..-..|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHhcCCCChhhHHHH
Confidence 88888888888776554443
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.13 E-value=45 Score=30.83 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.+.-++.+.+.+++.+|+...++- .-+| |...-..|+..++..|++++|..-++.+-.+.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445567788899999999888554 4667 66777788899999999999999999988888874
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.10 E-value=1.4e+02 Score=29.47 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=29.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH---HHHHHHHHhcCCChHHHHHHHHHh
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVT---FVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
+..+-.+.|+..+|.+.|+++.+. .|-... ...+|.+|.....+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445577888888888777653 232211 234566666655555555544433
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.55 E-value=28 Score=38.65 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
+.++++.+.+.+.-.--| -++|..+.+.|-.+-|+.+.+.=..+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666666555433222 13455556677777666554433222 123456788888888
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 403 ~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
.-+++. |..+|..|+......|+.+.|+..+++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 887765 667888888888888888888888887643
No 373
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.16 E-value=18 Score=28.26 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..+++.++.+|++...-..++..+...|++++|.+.+-.+.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555667777766777777777777777777776666543
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=80 Score=31.19 Aligned_cols=88 Identities=20% Similarity=0.136 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCC--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML----MPP--NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
|--=.+-|.+..++..|...|.+-. -.| +.+.|+.-..+-...|++..++.-..+++.++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344556888999999999996651 234 4578888777888899999999999999999999988888888888
Q ss_pred HhcccchHHHHHHH
Q 007134 458 AYEQRWLNVQEVRR 471 (616)
Q Consensus 458 ~~~g~~~~a~~~~~ 471 (616)
....++++|....+
T Consensus 164 ~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 164 LELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888666555443
No 375
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.09 E-value=1.5e+02 Score=31.57 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888774
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.97 E-value=99 Score=25.10 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
+++.++.+.+ ..-|+.|+..|...|..++|++++.+...
T Consensus 29 ~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 29 LEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5555555532 23589999999999999999999998876
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.80 E-value=37 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=9.6
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 007134 150 LKAISKLADVRMGEQTHSVAI 170 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~ 170 (616)
..+|...|+.+.|+++++.++
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 378
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.76 E-value=23 Score=29.84 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 007134 122 ANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153 (616)
Q Consensus 122 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 153 (616)
|.-.+|-.+|++|+..|-+||. |+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 5666789999999999988875 66776654
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.72 E-value=35 Score=25.80 Aligned_cols=45 Identities=4% Similarity=0.103 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 402 (616)
...-++|+..|....++..-.|+ -.+..+++.+|...|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444442211222 2233444444555555444443
No 380
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.54 E-value=4.6e+02 Score=30.16 Aligned_cols=215 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhCCCCchhHHHH--
Q 007134 212 WNSVINGFASNGKPNEALTLFREMAS---EGVEPDGYTMVSLFSACAELGAL--ALGRRAHTYVWKVGLSDNVNVNNA-- 284 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~-- 284 (616)
|..|+.-|...|+.++|++++.+... ..-.--...+-.++.-+...+.. +...++-....+........+++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHH
Q 007134 285 ----------LLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350 (616)
Q Consensus 285 ----------li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 350 (616)
.+--|.+....+-+...++.+. ..+..-.+.++.-|+..=+. -..-...|-..-..+|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~------~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE------QASTDGKGEEAPETTVRE 660 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh------ccCchhccccchhhhHHH
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~ 430 (616)
-+..+....+.=....+++.. |....|....-.++|.|+.++|+.++-..- ++++
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~-------~~~~l~ee~aill~rl~khe~aL~Iyv~~L------------------~d~~ 715 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERL-------NGDELYEERAILLGRLGKHEEALHIYVHEL------------------DDID 715 (877)
T ss_pred HHHHHhhhhcccCcchhhhhc-------cchhHHHHHHHHHhhhhhHHHHHHHHHHHh------------------cchh
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
.|........+.++.+...|..+..+|
T Consensus 716 ~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 716 AAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHH
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.15 E-value=2.5e+02 Score=27.01 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHhcCchH-HHH
Q 007134 190 AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL----FREMASEGVEPDGYTMVSLFSACAELGALA-LGR 264 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~ 264 (616)
+.+++++|.+++..- ...+.+.|+..-|-++ .+-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666776665431 2233444444333322 222333455555555555555444433211 122
Q ss_pred HHHHHHHH---hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 265 RAHTYVWK---VG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 265 ~~~~~~~~---~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
.+...+++ .| -.-+......+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 23333322 22 2236778888889999999999998887654333333332233222222322222
Q ss_pred CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
|...-.+++ -|...+++..|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222333 344567788888777776653
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.95 E-value=2.5e+02 Score=27.26 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=58.4
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCchHHHHHHHHH----HHHhCCCCchhHHHHHH
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGY-------TMVSLFSACAELGALALGRRAHTY----VWKVGLSDNVNVNNALL 286 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li 286 (616)
..++.+++++|+..+.+....|+..|.. |...+...|...|+...-.+.... |....-+-...+..+|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3445556666666666666665554433 233344445555544333222211 11111122233344444
Q ss_pred HHHHhc-CCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCcCCHHH
Q 007134 287 DFYSKC-GIIIAAQRVFREMRKR-----N----AVSWSTLVVGLAVNGFGKEALELFKEM----EIGGFVPGEVT 347 (616)
Q Consensus 287 ~~y~~~-g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t 347 (616)
+.+... ..+++-.++.....+. . ...-.-+|..+.+.|.+.+|+.+...+ .+-.-+|+..+
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 444322 2233333333322210 0 111234677788888888888765443 33344454433
No 383
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.52 E-value=72 Score=30.07 Aligned_cols=55 Identities=9% Similarity=-0.059 Sum_probs=44.7
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+...|++-++++.-..++...|.+..+|..-+.+.+..=+.++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445678888888888888999999998898888888887788888888877765
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.42 E-value=1.3e+02 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 007134 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
..|+.+.|.++++.++ +....|..++.++.+.|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777778877777 77777777777777777665554
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.33 E-value=75 Score=28.87 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 409 MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 409 ~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
..|+..++..++.++...|+.++|.+..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555555555556666666665555555555
No 386
>PF15469 Sec5: Exocyst complex component Sec5
Probab=48.01 E-value=2.1e+02 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=25.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
+......++.++++..- .+..-.-|.-|.+.|+++.+...|..+..-
T Consensus 69 k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 69 KADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 33344445555544332 122334555666777777777777766553
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.99 E-value=4.3e+02 Score=28.78 Aligned_cols=176 Identities=12% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHhhCCCC-ChhHHHHHHHH-----HHhcCCchHHHHHHHHHHH-------CCCCCCcchHHHHHHHHHcCC--
Q 007134 93 MSYAHNIFSHVQDP-NIFTWNTMIRG-----YAESANPLLAVELYSKMHV-------SGIKPDTHTYPFLLKAISKLA-- 157 (616)
Q Consensus 93 ~~~A~~~f~~m~~~-~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~~~~~~~-- 157 (616)
...|.+.|+..... ++..-..+... +....+.+.|+..|+.+.+ .| +.....-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655432 33332222222 3455677888888887766 34 2334444555554432
Q ss_pred ---CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH----hCCCccHH
Q 007134 158 ---DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA-FGHVKDACKVFELMSER-DLVAWNSVINGFA----SNGKPNEA 228 (616)
Q Consensus 158 ---~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~----~~g~~~~A 228 (616)
+.+.|..++....+.| .|+....-..+..... ..++..|.++|...... .+.+.-.+...|. ...+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5566777777777776 3333322222222222 23566777777665432 2222222222222 12345666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
..++++.-+.| .|-..--...+..+.. +..+.+...+..+...|
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 66666666665 2222222222223333 44444444444444443
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.87 E-value=62 Score=31.34 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
.+.....|.++|.+.+|.++-++... -+...|-.++..++..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677888888888888777654 245567778888888888777777777764
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.68 E-value=73 Score=28.97 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=38.2
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML 408 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (616)
.....+.+......+.+.+.....|+...|..++..+...|+.++|.+..+++.
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 335566665555555555544566888888888888888888888888887773
No 390
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.55 E-value=2.4e+02 Score=25.67 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=55.1
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCC----
Q 007134 99 IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGF---- 174 (616)
Q Consensus 99 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---- 174 (616)
+.....++..+.|-.....-++.-+.+++-..|- -..=.+++-.|-+..++.+++++++.+-+..+
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333344455556666655555544444333221 01223456667777778888888877765422
Q ss_pred ----------CCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007134 175 ----------ESLVFVQNSLVHMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 175 ----------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 203 (616)
.+--.+.|.-..++.+.|.+|.|..++++
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334567777778888888888877764
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.20 E-value=51 Score=25.88 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=32.7
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCC---------CchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHS---------GDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.|++..|.+.+.+.++...... .+...++.++...|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777666666654332211 1123466677788999999888877754
No 392
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.94 E-value=2.2e+02 Score=31.61 Aligned_cols=181 Identities=17% Similarity=0.245 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhcCchHHHHHHHHHHHHh-C-CCCc
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGY----------TMVSLFSACAELGALALGRRAHTYVWKV-G-LSDN 278 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~~ 278 (616)
+-..++-.|....+++..+++.+.++.. ||.. .|.-.++---+-|+-++|....--+++. | +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3445666677777888888888887653 3322 2323333333445666666655555443 3 3343
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH---HHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV---TFVGVLYAC 355 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~ 355 (616)
+||-||++ |..|- +-+.|-..+..+.|.+.|++.-+ +.|+.. .+..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 46666653 22221 12334445556777788887765 566653 344455442
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
.+. ++...+ +.. .--.|-..+++.|.++.-.++++- . ..+.+-.-..++.+|.++
T Consensus 334 G~~--Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEH--FENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--ccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHH
Confidence 211 111111 110 111234557788888877766642 2 234455566788899999
Q ss_pred HHHHHhcCCC
Q 007134 436 RSTLLQLEPK 445 (616)
Q Consensus 436 ~~~~~~~~p~ 445 (616)
.+.|.++.|.
T Consensus 389 ae~mfKLk~P 398 (1226)
T KOG4279|consen 389 AEMMFKLKPP 398 (1226)
T ss_pred HHHHhccCCc
Confidence 9999988876
No 393
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.52 E-value=4.1e+02 Score=28.18 Aligned_cols=162 Identities=9% Similarity=0.044 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
|....-++++.++......-.+.+-.+|.. .+-..+-.++..|.++ ..++-..+|+++.+.. .|.+.+.--+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 334444556666665555555555555543 3455666677777776 4556667777666632 3333444334334
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPK------IEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNAVIWRTLLGACTI 425 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~ 425 (616)
...++.+.+..+|..+..+ +.|. ...|.-++..- ..+.+..+.+...+ +...-.+.+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4446666676777666542 2221 22444444322 23344444444333 222233444555556666
Q ss_pred cCCcHHHHHHHHHHHhcCCCC
Q 007134 426 HGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..++++|+++...+++.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 677777777777666655443
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.00 E-value=2.9e+02 Score=28.54 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=62.8
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhH--HHHHHHHHH
Q 007134 216 INGFASNGKPNEALTLFREMASEGVEPDGY---TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV--NNALLDFYS 290 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~ 290 (616)
+...+..|+.+.+..++ +.|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+
T Consensus 72 L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred HHHHHHCCCHHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 44455667766544444 333211110 0112333344556554 4445556666554321 233455556
Q ss_pred hcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH---HHHHHHHhcCCChHHH
Q 007134 291 KCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF---VGVLYACSHCGMVDEG 364 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a 364 (616)
..|+.+-+..+++.-... |..-++.+..+ +..|+.+ +.+.+.+.|..|+...- .+++......|..+-+
T Consensus 144 ~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv 218 (413)
T PHA02875 144 MMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218 (413)
T ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH
Confidence 778877766666543322 22233333332 3445543 34445556666554221 2334433445555444
Q ss_pred H
Q 007134 365 F 365 (616)
Q Consensus 365 ~ 365 (616)
.
T Consensus 219 ~ 219 (413)
T PHA02875 219 R 219 (413)
T ss_pred H
Confidence 3
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.72 E-value=25 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 427 GHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
|+.+.+..++++++...|.++..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHH
Confidence 45677777888877777765555443
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.37 E-value=73 Score=27.34 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccch
Q 007134 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464 (616)
Q Consensus 397 ~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 464 (616)
-+.|.++.+-|| ...............|++..|.++.+.++..+|++...-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356677777775 23333344556678999999999999999999998887778888877665433
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.28 E-value=1.4e+02 Score=27.74 Aligned_cols=64 Identities=9% Similarity=-0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCc-------HHHHHHHHHHHhcCCC--C----CCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 414 VIWRTLLGACTIHGHS-------AIAEIARSTLLQLEPK--H----SGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~-------~~a~~~~~~~~~~~p~--~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.++.-+...|+..|+- ..|.+.|+++.+.+.. . ......++.++.+.|+.++|.+.+.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4555556666777764 4455555555544322 1 2334578888999999999999999887543
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.17 E-value=1.7e+02 Score=28.23 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC--CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-
Q 007134 114 MIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA- 190 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~- 190 (616)
=|.+++..+++.+++...-+--+. .++|.. ...-|-.|.+.+....+.++-..-++..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 366777777777766554333221 122222 222233355666666555555544442211122224444444433
Q ss_pred ----cCCHHHHHHHH
Q 007134 191 ----FGHVKDACKVF 201 (616)
Q Consensus 191 ----~g~~~~A~~~f 201 (616)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35666666554
No 399
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.94 E-value=1.6e+02 Score=22.87 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHH
Q 007134 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 162 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 228 (616)
+.++++.++..|+-.+. -...+-..-...|+.+.|+++++.++ +..-.|...+.++-..|+-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~-d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE-DRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHH-HHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34566666666632221 11211111125578888888888888 7777888888888877765544
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.09 E-value=3.4e+02 Score=26.49 Aligned_cols=115 Identities=9% Similarity=0.127 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHh-CCCcCCHHHHHHHHHHHhc--CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 007134 323 NGFGKEALELFKEMEI-GGFVPGEVTFVGVLYACSH--CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (616)
+....+|+.+|+.... ..+--|......+++.... ......-.++.+.+...++-.++..+...++..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345677777774322 2344556666666655443 123334445555565656667777788888888888888888
Q ss_pred HHHHHHhCC----CCCcHHHHHHHHHHHHHcCCcHHHHHHHH
Q 007134 400 AYEYIQNML----MPPNAVIWRTLLGACTIHGHSAIAEIARS 437 (616)
Q Consensus 400 A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 437 (616)
-.++++... ..-|...|..+|..-...|+......+..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888887653 22366788888888888887665555444
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.03 E-value=41 Score=32.71 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 249 (616)
-||..|..-++.|+.++|++++++.++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888999999999999999988887655555543
No 402
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.93 E-value=1.2e+02 Score=32.53 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHhcC--CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHhC-CCCCc--HHH
Q 007134 342 VPGEVTFVGVLYACSHC--GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL-GRAGLVKQAYEYIQNM-LMPPN--AVI 415 (616)
Q Consensus 342 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~pd--~~~ 415 (616)
-|+..|..+++.-.... ..-+-|-.+|..|.+ .+.|--...|. ...| .-.|+...|...+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46776666665544332 233456666666654 33343332222 2333 3468888888877655 34452 245
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 416 WRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
...|.+...+.|-...|-.++.+.+.+....|-.+..++++|....+++.|.+.++...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 56677777788888888888888888876667788899999999999999999998876654
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.10 E-value=9.1e+02 Score=31.17 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.+|....+.+.+.|.++.|....-...+. -.|. .+--....+-..|+...|+.++++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~--r~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES--RLPE--IVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc--ccch--HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 45555566666667777766655555442 1222 2334445566667777776666543
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.76 E-value=25 Score=29.56 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
...|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667899999999999999984 66777654
No 405
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.65 E-value=2.4e+02 Score=29.43 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-----------LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
++++|.++.+.+ |....|...+....+.|. +++-.++++.+.+.| ...+...-|+.|-+.
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeeccccc
Q ss_pred CCHHHHHHHHHhcCCC-------------ChhhHHHHHHHH-----HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 293 GIIIAAQRVFREMRKR-------------NAVSWSTLVVGL-----AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 293 g~~~~A~~~f~~m~~~-------------~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
+++++|..-+++-.+. .+..-..++... .++|.+ .+..+++-+...|+....--..+.---
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnlP 178 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP-DARLLAEIILAGGFTSFEGGGISYNIP 178 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-cHHHHHHHHHHcCCCccCCCcceeccc
Q ss_pred HhcCCChHHHHHHHH---HhHHhh---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 007134 355 CSHCGMVDEGFSYFK---RMKDEY---GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~---~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~ 428 (616)
|++.=-++++...|+ ++...| |+..+.+++..|...+ ++|....-..+|.++....+
T Consensus 179 YsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL-----------------vPPsisiav~ilE~Lla~eq 241 (480)
T TIGR01503 179 YAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL-----------------VPPSISNAIGIIEGLLAAEQ 241 (480)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc-----------------cChHHHHHHHHHHHHHHHHc
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC--CCccCCceeeEEeCCEEEEEEeCCCCCcch
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE--RVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 506 (616)
-...+.-.|.++|+..+=...+..+++. ..-+.-|+..+.+..-+|.++-|.......
T Consensus 242 --------------------GVksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~ 301 (480)
T TIGR01503 242 --------------------GVKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESK 301 (480)
T ss_pred --------------------CCeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhh
Q ss_pred HHHHHHHHHHHHHH
Q 007134 507 EEIHAMLAEITKKL 520 (616)
Q Consensus 507 ~~~~~~l~~l~~~m 520 (616)
....-.+.-....|
T Consensus 302 A~~lis~~a~~A~l 315 (480)
T TIGR01503 302 AFGVISTATTIAAL 315 (480)
T ss_pred hhhHHHHHHHHHHH
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.62 E-value=1.2e+02 Score=25.33 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 007134 59 LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100 (616)
Q Consensus 59 ~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f 100 (616)
.+.++.++...|+....+..|......+-+.| ++++|.++|
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~-~~~~A~~I~ 122 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRG-NFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 34444444444443333344444444444444 444444444
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.90 E-value=2.5e+02 Score=24.27 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---------CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMR---------KRNAVSWSTLVVGLAVNGF-GKEALELFKEMEIGGFVPGEVTFVGVL 352 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 352 (616)
|.++.-...-++......+++.+. ..+-.+|..++.+.++..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444332 1244556666666644443 233455666666656666666666666
Q ss_pred HHHhcC
Q 007134 353 YACSHC 358 (616)
Q Consensus 353 ~a~~~~ 358 (616)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666554
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.85 E-value=37 Score=33.05 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 146 (616)
||..|..-++.||.++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 557777777777777777777777777655444444
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.74 E-value=47 Score=30.94 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566666666766655 3444 45677777777777778888888888777777664
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.24 E-value=1.2e+02 Score=20.34 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=22.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777776666665554
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.70 E-value=5.2e+02 Score=27.92 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCC-CCCchhhhhHHhH-hcccchHHHHHHHHH
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPK-HSGDYVLLSNLYA-YEQRWLNVQEVRRTM 473 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m 473 (616)
....+.|-+..|.+..+.+++++|. +|-....+++.|+ ++.+++--+++++..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445666677777777777777776 6666666666664 455565555555554
No 412
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.58 E-value=77 Score=19.79 Aligned_cols=30 Identities=17% Similarity=-0.114 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHH--HHHhcCCC
Q 007134 416 WRTLLGACTIHGHSAIAEIARS--TLLQLEPK 445 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~~~~--~~~~~~p~ 445 (616)
|-++...+-..|++++|+.+++ -+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3445555666677777777733 55444443
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.18 E-value=4.8e+02 Score=26.82 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRK------RNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
.+.-+.+-|..||+++.|.+.|.+... .-+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455677889999999999999988543 1233555666666666777776666666554
No 414
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.11 E-value=1e+02 Score=25.47 Aligned_cols=21 Identities=10% Similarity=-0.235 Sum_probs=13.1
Q ss_pred hhHHhHhcccchHHHHHHHHH
Q 007134 453 LSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m 473 (616)
-+.++...|+.++|.+.|+..
T Consensus 106 ra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 106 RAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHH
Confidence 344556678888888777653
No 415
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.96 E-value=78 Score=23.97 Aligned_cols=46 Identities=11% Similarity=0.015 Sum_probs=27.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
...+.++|+..|+...+.-..|.. .++..++.+++..|.+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777766654322222 4566667777777777666554
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.85 E-value=54 Score=23.46 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555666666666665555554
No 417
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.73 E-value=1.8e+02 Score=25.89 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCc
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 159 (616)
+.+..-.+++..+...+++-.|.++++++.+.+...+..|.-..|..+...|-+
T Consensus 23 R~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 23 RLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 333344455555555555566666666666666555555554555555554433
No 418
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.35 E-value=6.5e+02 Score=28.80 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
....||+++.|++.-..+. |..+|..|...-...|+.+-|+..|++... |.-|-..|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4567999999988876654 556899999999999999999999988654 22333345567888887766
Q ss_pred HHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 368 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
.+-...+ .|... ....-.-.|+.++=.++++..+..|-... ....+|.-++|.++.++.-+
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~layl------ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLAYL------TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHHH------HHhhcCcHHHHHHHHHhhcc
Confidence 6555432 33221 11112246888999999988875543221 23568888999999888754
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.57 E-value=2.1e+02 Score=22.24 Aligned_cols=62 Identities=16% Similarity=0.023 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCchhhhhHHhHhcccch-HHHHHHHHH
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--SGDYVLLSNLYAYEQRWL-NVQEVRRTM 473 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~-~a~~~~~~m 473 (616)
|...--.+...+...|+++.|.+.+-.+++.+++. ...-..|..++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44566666777777788888887777777766653 223345555555555432 333444433
No 420
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.34 E-value=46 Score=32.29 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
..+.|+.++|..+|+.. ...| ++.+..-+..-.-.++++-+|-+.+-+++.+.|.+..+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 45778888888888654 3555 3445555555556667777788888888777777665443
No 421
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.34 E-value=3e+02 Score=24.80 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=11.4
Q ss_pred HHHHHHHHhC-CCCCcHHHHHHHHHHH
Q 007134 398 KQAYEYIQNM-LMPPNAVIWRTLLGAC 423 (616)
Q Consensus 398 ~~A~~~~~~m-~~~pd~~~~~~ll~a~ 423 (616)
++|.+.|++. ..+|+..+|+.-+..+
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3334444333 2456666666555544
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.00 E-value=1e+02 Score=20.72 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=14.4
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 007134 120 ESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150 (616)
Q Consensus 120 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 150 (616)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555444444444333
No 423
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.77 E-value=1.7e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=29.1
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHH
Q 007134 290 SKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (616)
+...+.+.|.++++.++.+...+|.++..++...|+..-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888888887777765444
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.72 E-value=1.9e+02 Score=24.24 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007134 128 VELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171 (616)
Q Consensus 128 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 171 (616)
.+-++.+..-++.|+.......+++|-+.+|+..|.++++-+..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455566667889988899999999999999999999887753
No 425
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.39 E-value=2e+02 Score=24.78 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch
Q 007134 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT 145 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 145 (616)
-.++..+.+.+++-.|.++|+++.+.+..-+..|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3444444444444455555555554443333333
No 426
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.81 E-value=3.7e+02 Score=25.15 Aligned_cols=94 Identities=21% Similarity=0.176 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC---CHHHH--HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTF--VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 385 (616)
.-.|.|+--|..+..+.+|-+.|.. +.|+.| |..++ ..-|......|+++.|.+....+... -+..|...+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3455666666665556666666643 334444 22333 23445556778888888777776542 2333322221
Q ss_pred HHH----HHHHhcCCHHHHHHHHHhC
Q 007134 386 CMV----DLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 386 ~li----~~~~~~g~~~~A~~~~~~m 407 (616)
.|. --+.|.|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 111 1245788888888888653
No 427
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.54 E-value=1.5e+02 Score=22.78 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHH
Q 007134 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 228 (616)
..++..+++.|+-.. ...-...+...+.+.|.++++.++.++..+|.+...++-..|+..-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345566666553221 22222334455677788888888888888888888877776654433
No 428
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.06 E-value=78 Score=32.87 Aligned_cols=56 Identities=7% Similarity=-0.082 Sum_probs=48.2
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.....++++.|...+.++++++|+.+..|..-+.++.+.+++..|..-..+..+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34556789999999999999999988888888899999999999998887776654
No 429
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=32.93 E-value=15 Score=26.48 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.7
Q ss_pred eEEEecCCccccccccccCCC
Q 007134 593 EIVVRDRSRFHHFKDGHCSCR 613 (616)
Q Consensus 593 ~~~~~d~~~~h~~~~g~csc~ 613 (616)
.|-+.|.+..|+|+|||-+-+
T Consensus 9 si~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEEE
T ss_pred eEecCCCCEEEEEcCCceehh
Confidence 477899999999999986543
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.73 E-value=2.3e+02 Score=25.61 Aligned_cols=53 Identities=15% Similarity=0.301 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhHHhhCCCCC-hhhH-----HHHHHHHHhcCCHHHHHHHHHhCCCCCcH
Q 007134 361 VDEGFSYFKRMKDEYGIMPK-IEHF-----GCMVDLLGRAGLVKQAYEYIQNMLMPPNA 413 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~~~~p~-~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~pd~ 413 (616)
++.|..+|+.+.++...+-+ .... ...+-.|.+.|.+++|.+++++.--.|+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~ 143 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPES 143 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCc
Confidence 45666667766664221101 1111 11223455555555555555554323433
No 431
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.38 E-value=8.1e+02 Score=28.03 Aligned_cols=216 Identities=12% Similarity=0.016 Sum_probs=116.2
Q ss_pred HHhcCCHHHHHHHHhhcC----CCCh-------hHHHHHHHH-HHhCCCccHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007134 188 YAAFGHVKDACKVFELMS----ERDL-------VAWNSVING-FASNGKPNEALTLFREMASE----GVEPDGYTMVSLF 251 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll 251 (616)
.....++++|..+..+.. .++. ..|+++-.. ....|++++|+++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888887653 2221 256665433 34568889999888776543 1223445556666
Q ss_pred HHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCC--HHHHHHHHHhcCC-----CC-----hhhHH
Q 007134 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALL-----DFYSKCGI--IIAAQRVFREMRK-----RN-----AVSWS 314 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~y~~~g~--~~~A~~~f~~m~~-----~~-----~~~~~ 314 (616)
.+..-.|++++|..+.....+..-..++..+.... ..+...|+ ..+....|..... .. ...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77777899999999888777653333333333222 23445563 2333333433321 11 12333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HhCCCcCCHHHHH--HHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEM----EIGGFVPGEVTFV--GVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCM 387 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 387 (616)
.+..++.+ .+.+..-...- ......|-..... .+.......|++++|....+++..- ...++ ..-|.++
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~ 660 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHH
Confidence 34444444 33332222222 2222222222222 4556677799999999999888763 22222 2223332
Q ss_pred H---H--HHHhcCCHHHHHHHHHhC
Q 007134 388 V---D--LLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 388 i---~--~~~~~g~~~~A~~~~~~m 407 (616)
+ . .....|+.+++.....+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2 2 234678888877776653
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.17 E-value=1.7e+02 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455677788888888888886544
No 433
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.84 E-value=4.9e+02 Score=25.34 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCcchH-------HHHHHHHHcCCCcHHHHHHHHHH----HHhCCCCcHHHHHH
Q 007134 115 IRGYAESANPLLAVELYSKMHVSGIKPDTHTY-------PFLLKAISKLADVRMGEQTHSVA----IRNGFESLVFVQNS 183 (616)
Q Consensus 115 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ 183 (616)
.+-.++..++++|+..+.+.+..|+..|..+. ..+.+.|.+.|+...-.+..... ....-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34455677888899999988888877765543 44566677777765544333222 22222333445555
Q ss_pred HHHHHHhc-CCHHHHHHHHhhcCC---C-C-----hhHHHHHHHHHHhCCCccHHHHHHHHH----HHCCCCCCHHHHHH
Q 007134 184 LVHMYAAF-GHVKDACKVFELMSE---R-D-----LVAWNSVINGFASNGKPNEALTLFREM----ASEGVEPDGYTMVS 249 (616)
Q Consensus 184 Li~~y~~~-g~~~~A~~~f~~~~~---~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ 249 (616)
|+..+-.. ..++.-.++.....+ + + ...-.-+|..+.+.|++.+|+.+...+ .+-.-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 66655433 344554544443322 1 0 112245788888999999998776544 44444555554433
Q ss_pred HH-HHHHhcCchHHHHH
Q 007134 250 LF-SACAELGALALGRR 265 (616)
Q Consensus 250 ll-~a~~~~~~~~~a~~ 265 (616)
+= .+|-...++..++.
T Consensus 170 lESKvyh~irnv~Kska 186 (421)
T COG5159 170 LESKVYHEIRNVSKSKA 186 (421)
T ss_pred hhHHHHHHHHhhhhhhh
Confidence 22 23333444444433
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.36 E-value=3.1e+02 Score=22.90 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHh
Q 007134 161 MGEQTHSVAIRNGFESL-VFVQNSLVHMYAAFGHVKDACKVFE 202 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~ 202 (616)
.+.++|..|...|+... ...|..-...+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555544443222 3344445555555555555555554
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.24 E-value=4.8e+02 Score=25.06 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 176 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
-|+.....+...|.+.|++.+|+.-|-.-..++...+-.++.-....|...++ |.+.-..++. |.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 46778888999999999999999888554444443333344433334443333 2222222332 44
Q ss_pred hcCchHHHHHHHHHHHH
Q 007134 256 ELGALALGRRAHTYVWK 272 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~ 272 (616)
..+++..|...+....+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56667777766655544
No 436
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.88 E-value=4.6e+02 Score=25.71 Aligned_cols=53 Identities=6% Similarity=0.021 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007134 81 YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 81 ~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
.++..+.+.. ++..-...+..+ ..+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~-~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQ-NLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555544 555555555555 3445555677777888888888888877765
No 437
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.75 E-value=2.6e+02 Score=30.59 Aligned_cols=72 Identities=10% Similarity=-0.026 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHhcCCChH------HHHHHHHHhHHhhCCCCChhhHHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIG--GFVPGEVTFVGVLYACSHCGMVD------EGFSYFKRMKDEYGIMPKIEHFGC 386 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~~p~~~~~~~ 386 (616)
+|+.+|..+|++..+..+++.+... |-+.=...++..|+...+.|.++ .|.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777888888888887777777653 32222345666666667766543 233333322 23455556655
Q ss_pred HHHH
Q 007134 387 MVDL 390 (616)
Q Consensus 387 li~~ 390 (616)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 5543
No 438
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.68 E-value=7.7e+02 Score=27.22 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=26.2
Q ss_pred HcCCHHHHHHHHHHHHhCC-CcCC-----HHHHHHHHHH--HhcCCChHHHHHHHH
Q 007134 322 VNGFGKEALELFKEMEIGG-FVPG-----EVTFVGVLYA--CSHCGMVDEGFSYFK 369 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g-~~p~-----~~t~~~ll~a--~~~~g~~~~a~~~~~ 369 (616)
-.+++..|...+.+|.... -.|+ ...+...+.+ +...|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567777777777776531 1111 1222233322 234577888888886
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.53 E-value=5.3e+02 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=13.9
Q ss_pred CHHHHHHHHhhc-C-CCChhHHHHHHHHH
Q 007134 193 HVKDACKVFELM-S-ERDLVAWNSVINGF 219 (616)
Q Consensus 193 ~~~~A~~~f~~~-~-~~~~~~~~~li~~~ 219 (616)
+++.++++...+ . +.+...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 355666666666 2 35556666655443
No 440
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=4.7e+02 Score=24.85 Aligned_cols=81 Identities=9% Similarity=-0.127 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHH-HHHHHhcCCChHHH
Q 007134 289 YSKCGIIIAAQRVFREMR--KRNA-VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG-VLYACSHCGMVDEG 364 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a 364 (616)
|.....++.|...|.+.. .|++ .-|+.-+.++.+..+++.+..=-++..+ +.||.+--.. +..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444455666666665543 3444 3345556666666777666655555544 4566543322 22344455566666
Q ss_pred HHHHHHh
Q 007134 365 FSYFKRM 371 (616)
Q Consensus 365 ~~~~~~m 371 (616)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666555
No 441
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.46 E-value=3.1e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 182 NSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 182 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
-.++..+-+.+++.+..+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666666666666665552 334445567777788888888888877654
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.05 E-value=4.5e+02 Score=23.99 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=27.1
Q ss_pred HhcCCHHHHHHHHHhcCC------CChhhHHHHHH-HHHHcCC--HHHHHHHHHHHHhC
Q 007134 290 SKCGIIIAAQRVFREMRK------RNAVSWSTLVV-GLAVNGF--GKEALELFKEMEIG 339 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 339 (616)
...|++++|.+-++.+.+ +-...|+.+.. +++.++. +-+|.-++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 345566666666655542 23344555554 6666654 55666666555443
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.70 E-value=1.5e+02 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
|-.--..+|.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344556666666666666666666554
No 444
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.68 E-value=3.8e+02 Score=23.07 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
..++..+.+.++.-.|.++++++.+.+...+..|....|..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555666666666666555555555555555555444
No 445
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.50 E-value=3.6e+02 Score=22.65 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHH-HHHHHHHHHcCCcHHHHHHHHH
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIW-RTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~-~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
-..+-.++..++.=.|..++|.+++.....-++-... .-++..|+...+-++...+-++
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445556666666677777777777666544333222 3355666665555554444433
No 446
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=1.9e+02 Score=27.82 Aligned_cols=57 Identities=19% Similarity=0.061 Sum_probs=48.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+=.++.+.++++.|....++.+.++|+++....--+-+|.+.|...-|.+-+....+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 345678888999999999999999999888888889999999999999888877544
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.14 E-value=6.9e+02 Score=25.91 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=29.4
Q ss_pred hHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 312 SWSTLVVGLAV---NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 312 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
.+..+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555555 478888999999999888777755544444443
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.04 E-value=6.2e+02 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
..+-....-|++.|+-+.|++.+++
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344455566677777766666643
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=1.1e+03 Score=28.08 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=13.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 007134 287 DFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~ 306 (616)
.+|..+|...+|.+.|.+..
T Consensus 928 ~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeeecCCchHHHHHHHHHHh
Confidence 34667777777877776553
No 450
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.60 E-value=1.8e+02 Score=28.46 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=34.4
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP 411 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 411 (616)
..+.|+.++|..+|+.... +.|+ ......+........++-+|..++-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3468999999999998874 4454 444444444444456666676666444 4566
No 451
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.51 E-value=6.3e+02 Score=25.20 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCcCCH----H
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRKR--------NAVSWST-LVVGLAVNGFGKEALELFKEMEIGGFVPGE----V 346 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 346 (616)
...-.....|++-|+-+.|.+.+...-++ |++-+.. |.--|..+.-..+-++..+.+.+.|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34445566788888888888888765433 4433332 222344444456666666666666643332 3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
+|-.+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444332 3445677777777766554
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.33 E-value=2.3e+02 Score=24.21 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.|.-++.+.|+++++++..+.+++.+|++..
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4555788999999999999999999998553
No 453
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=26.78 E-value=3.8e+02 Score=22.47 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH---HHHHHHHHcC-------CCcHHHHHHHHHHHHhCCCCcHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY---PFLLKAISKL-------ADVRMGEQTHSVAIRNGFESLVFV 180 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~~~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~ 180 (616)
....++.+.+..-.-.++++..++....-.|..+.- +.-++.|-.. +.....-.+...+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 455555555555566677777777766544554422 2234444322 223334455667777776666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
+..+=..+.+..++.+|-.+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 777777777888888888888754
No 454
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.78 E-value=7.8e+02 Score=26.06 Aligned_cols=145 Identities=16% Similarity=0.097 Sum_probs=86.8
Q ss_pred HHHHHHHHhhCCCCC--h--------hHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCC--cc-----hHHHHHH-HH
Q 007134 93 MSYAHNIFSHVQDPN--I--------FTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPD--TH-----TYPFLLK-AI 153 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~--~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd--~~-----t~~~ll~-~~ 153 (616)
-|+|...-++.++-| + .....++-+-.-.|++.+|++-...|.+.. -.|. .. -...++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 355555666666544 1 122333444455799999999999998742 2233 11 1122332 34
Q ss_pred HcCCCcHHHHHHHHHHHHhCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH--------HHH--HHh
Q 007134 154 SKLADVRMGEQTHSVAIRNGFESLV--FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV--------ING--FAS 221 (616)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l--------i~~--~~~ 221 (616)
...+.++.|..-|..+.+.--..|. +....+.-.|.+.|+.+.-.++++.+..+|..++..- +.| ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877765433343 3344566778899999988888888876654433221 111 124
Q ss_pred CCCccHHHHHHHHHHH
Q 007134 222 NGKPNEALTLFREMAS 237 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~ 237 (616)
.+++.||...+.+-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5677777777766554
No 455
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.75 E-value=3.4e+02 Score=24.07 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
+++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444444455556666666666666556666666666666555533
No 456
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.70 E-value=1.8e+02 Score=21.65 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
....|+.+++.+++++....|..|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3457888999999999988888887777666666665544
No 457
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.31 E-value=6.8e+02 Score=25.16 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK-EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
.+.+++.++.+.+..+-+.+..-......++..++-...-.+ -+..+++++... ||......++++.+........
T Consensus 173 AD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 173 ADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHH
Confidence 344444444443333333333322333334443333333222 233344444432 7777777777777776665555
Q ss_pred HHHHHHhHH
Q 007134 365 FSYFKRMKD 373 (616)
Q Consensus 365 ~~~~~~m~~ 373 (616)
...++.+..
T Consensus 250 ~~~i~~~L~ 258 (340)
T PF12069_consen 250 AILIDALLQ 258 (340)
T ss_pred HHHHHHHhc
Confidence 554555444
No 458
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.26 E-value=5.7e+02 Score=24.25 Aligned_cols=91 Identities=11% Similarity=0.211 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHhHHhhCCCC-ChhhHHHHH---HHHHhcCCHHHHHHHHHhCC---CCCcHHHHHH---HHH--HH-HH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMP-KIEHFGCMV---DLLGRAGLVKQAYEYIQNML---MPPNAVIWRT---LLG--AC-TI 425 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li---~~~~~~g~~~~A~~~~~~m~---~~pd~~~~~~---ll~--a~-~~ 425 (616)
.+++.|+..|+..-+-|...- +...--+++ +.-+..+++.+|+++|++.. +..+..-|.. ++. .| ..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555544322211 122222333 23356778888888887763 2222222221 222 12 22
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..|.--+...+++-.+++|.-.++
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 356667788888888899984443
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.10 E-value=3.8e+02 Score=29.42 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHH------HHHHHHhhc-CCCChhHHHHHHHH
Q 007134 148 FLLKAISKLADVRMGEQTHSVAIRNG--FESLVFVQNSLVHMYAAFGHVK------DACKVFELM-SERDLVAWNSVING 218 (616)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~------~A~~~f~~~-~~~~~~~~~~li~~ 218 (616)
+++.+|...|++-.+.++++..+... -+.-...+|..|+-..+.|.++ .|.+.+++. ..-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888776543 1222334666666666777653 333444332 23456666666655
Q ss_pred HHh
Q 007134 219 FAS 221 (616)
Q Consensus 219 ~~~ 221 (616)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 460
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.79 E-value=6.1e+02 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 007134 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRK 307 (616)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~ 307 (616)
.|...+..+...+ +......|..+|.. ..+.++|...|....+
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4555555555544 33333334444433 2355666666665544
No 461
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.56 E-value=7.8e+02 Score=25.61 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHH
Q 007134 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEAL 229 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 229 (616)
|.++...| +.+.+.+-..... .++..++...+.++....+......+.+.+..++.......+.++...+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 007134 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309 (616)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 309 (616)
.+..-+. .++...-..++.++...+ ...........+ .++..+-..-+.++++.|..+..-.+-.-....|
T Consensus 121 ~L~~~L~----~~~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~ 191 (410)
T TIGR02270 121 WLEPLLA----ASEPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSD 191 (410)
T ss_pred HHHHHhc----CCChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCC
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
...-..-+.+....|. .+|......... .|+......+.......|.. ++...+..+.++ +. +-...+.
T Consensus 192 ~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d----~~--vr~~a~~ 260 (410)
T TIGR02270 192 PEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQA----AA--TRREALR 260 (410)
T ss_pred HHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCch-hHHHHHHHHhcC----hh--hHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHhCCCCC
Q 007134 390 LLGRAGLVKQAYEYIQNMLMPP 411 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~p 411 (616)
++++.|+..-+--+++.|.-.|
T Consensus 261 AlG~lg~p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHcCCcchHHHHHHHhcCcH
No 462
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=1e+03 Score=26.87 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcC
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 156 (616)
-++...|+-|.-.| ++++|-.+.-.|-..+..-|---+.-++..++...... -+.......+...|..+|-.+..
T Consensus 393 kv~~~yI~HLl~~~-~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEG-KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHhcc-hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH-
Confidence 35666777776666 78888777777777777777777777776666543222 22222122344456666666554
Q ss_pred CCcHHHHHHHHHHHH------------hCC-------CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 007134 157 ADVRMGEQTHSVAIR------------NGF-------ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~------------~g~-------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 209 (616)
.+.. ..++...+ ... ..+..+-..|+..|...+++..|.+++-...++++
T Consensus 468 ~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 468 SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 2211 11111111 000 11223344589999999999999999987766543
No 463
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.84 E-value=1.5e+02 Score=22.41 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=28.8
Q ss_pred hcCCCC-CCchh-hhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 441 QLEPKH-SGDYV-LLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 441 ~~~p~~-~~~~~-~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
.+.|.. .+.|. ++.+.+.++.-.++|.++++.|.++|-
T Consensus 23 ~l~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 23 RLEPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred cccccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 445542 33344 678888999999999999999998873
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.79 E-value=5.2e+02 Score=27.71 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--Chh---HHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 182 NSLVHMYAAFGHVKDACKVFELMSER--DLV---AWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 182 ~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
..|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999988632 122 334444555555444444555555443
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.77 E-value=6e+02 Score=24.07 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
+..|++.-++.-|-..++++.+|=. +- .-+--|.+..+.+---++.+-....++.-+......++ +...|++.+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEPIQ-SR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEPIQ-SR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhhHH-hh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Confidence 4455555555555555555544311 11 11122333333322233333333445555554555554 44678888888
Q ss_pred HHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 366 SYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 366 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
..++.-...+|... +..+|+-. -.|.+.....++..|. .+++++|.+++.++.+++
T Consensus 213 NnLQst~~g~g~Vn--------------------~enVfKv~-d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 213 NNLQSTVNGFGLVN--------------------QENVFKVC-DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHhccccccc--------------------hhhhhhcc-CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC
Confidence 87777665433211 11222211 2455555555555543 345666666666665544
No 466
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.27 E-value=7.9e+02 Score=25.22 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHH--cCCCcHHHHHHHHHHHHh
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAIS--KLADVRMGEQTHSVAIRN 172 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 172 (616)
|.... .+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 135 ~~~a~-~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAK-ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33334 334778899999999998886 555554 2334444443 345667777777776654
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.15 E-value=3.4e+02 Score=24.87 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh-hHHhHhcccchHHHHHHHHHh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL-SNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~y~~~g~~~~a~~~~~~m~ 474 (616)
..+.++..|...||++.|.++|.-++...+-|....-.+ +.++.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 455666777777777777777777766554444332222 233444444443335555553
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.87 E-value=1.7e+02 Score=23.72 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCc
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV 159 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 159 (616)
.++..+...+.+-.|.++++++.+.+...+..|.-..|+.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566667777888877776666666666666666655544
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.77 E-value=4.2e+02 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 282 NNALLDFYSKCGIIIAAQRVFREMRK-----------RNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
.-.|++.++-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888776641 144566667778888888888888887654
No 470
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.73 E-value=5.7e+02 Score=23.38 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=58.3
Q ss_pred HhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-----
Q 007134 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL----- 275 (616)
Q Consensus 201 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~----- 275 (616)
..+..++-.+.|-....+-++.-+.+++-+.|-- ..=.+++-.|-+.-++.+++++++.+.+..+
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L 168 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL 168 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3333344555666666666666555554443311 1223566677788888888888888765432
Q ss_pred ---------CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 276 ---------SDNVNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 276 ---------~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
.+--.+.|.-...+.++|.+|.|..++++
T Consensus 169 KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 169 KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23345566677777888888888877774
No 471
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.66 E-value=9.8e+02 Score=26.09 Aligned_cols=254 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-
Q 007134 64 AFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN-IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP- 141 (616)
Q Consensus 64 ~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 141 (616)
..........+.+..++.|+....... .++-..+++++.. . ...|..++++....|-.....-+.+.+....+.+
T Consensus 298 ~~~~~~~~~~~~~~~f~~lv~~lR~~~--~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ 374 (574)
T smart00638 298 VQDIASDVQEPAAAKFLRLVRLLRTLS--EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL 374 (574)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCC--HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHhcCCH------HHHHHHHhhcCC--
Q 007134 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV-------FVQNSLVHMYAAFGHV------KDACKVFELMSE-- 206 (616)
Q Consensus 142 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~Li~~y~~~g~~------~~A~~~f~~~~~-- 206 (616)
.....-..+-.....-..+....+++.+......+.. ..+.+|+.-++....- ++..+.+.+...
T Consensus 375 ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~ 454 (574)
T smart00638 375 EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQA 454 (574)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Q ss_pred ---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhCCCCchhH
Q 007134 207 ---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL--GALALGRRAHTYVWKVGLSDNVNV 281 (616)
Q Consensus 207 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~~~~ 281 (616)
.|..--...|.++...|. ..++..+..........+...-...+.|+.+. ...+.+..++-.+.... ..+..+
T Consensus 455 ~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~-~e~~Ev 532 (574)
T smart00638 455 VSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNR-AEPPEV 532 (574)
T ss_pred HhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCC-CCChHH
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007134 282 NNALLDFYSKC-GIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322 (616)
Q Consensus 282 ~~~li~~y~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 322 (616)
-.+-..+..++ =.......+.+.+......--.+.+..+.+
T Consensus 533 RiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 533 RMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 472
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.47 E-value=7.1e+02 Score=24.43 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=18.3
Q ss_pred CHHHHHHHHhhC--CCCChhHHHHHHHHHH
Q 007134 92 PMSYAHNIFSHV--QDPNIFTWNTMIRGYA 119 (616)
Q Consensus 92 ~~~~A~~~f~~m--~~~~~~~~~~li~~~~ 119 (616)
++..+..+...+ .+++...|..++..+.
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 577788888777 3577788887776554
No 473
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.28 E-value=6.2e+02 Score=25.62 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=13.3
Q ss_pred HHcCCCcHHHHHHHHHHHH
Q 007134 153 ISKLADVRMGEQTHSVAIR 171 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~ 171 (616)
|...++++.|+-++..++-
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 3456778888888777764
No 474
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.09 E-value=8.1e+02 Score=24.93 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=26.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh-cCCChHHHHHHHHHh
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-HCGMVDEGFSYFKRM 371 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m 371 (616)
|..+.+.|.+..|+++.+-+......-|.......|..++ ++++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455566666666666666655332223333333443332 445555444444443
No 475
>PRK14015 pepN aminopeptidase N; Provisional
Probab=22.93 E-value=1.2e+03 Score=27.04 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=63.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Q 007134 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHG 427 (616)
Q Consensus 350 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g 427 (616)
+.|.++.+.+. .+....++..-+++.-.|- ..-|-++...-...+-++...++.+.-.+.+ |+.-..+|+.+++..+
T Consensus 719 ~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n 797 (875)
T PRK14015 719 AALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAAN 797 (875)
T ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcC
Confidence 34444444333 2333344444343333333 3334444333222333334444333222333 4456678888886544
Q ss_pred Cc------HHHHHHH-HHHHhcCCCCCCchhhhhHHhHhcccchHHHHH
Q 007134 428 HS------AIAEIAR-STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 428 ~~------~~a~~~~-~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
.. ..+.+.+ +.++++++.||..-..|+..+.+-.++++.++.
T Consensus 798 ~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 798 PAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred CcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 32 4455554 556889999998888888888888888776653
No 476
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.86 E-value=2.7e+02 Score=21.71 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCC
Q 007134 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 224 (616)
+..-+.+.+.++++.++.++..+|..+..++-..++
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 344566777778877777777777777777765443
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.72 E-value=2e+02 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 44679999999999999999987 76644
No 478
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.57 E-value=1.1e+03 Score=26.08 Aligned_cols=267 Identities=8% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh------CCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCCchHHHHH
Q 007134 59 LKQVHAFSIRH------GVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDP--NIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 59 ~~~~h~~~~~~------g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
..++...+.+. ....+.+..+..|+....... .++-.+++.++... ....|+.+++++...|-.....-+
T Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~--~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i 400 (618)
T PF01347_consen 323 LKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLS--YEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFI 400 (618)
T ss_dssp --HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS---HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHc-CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISK-LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDL 209 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 209 (616)
.+.+....+.+....-....-.... .-..+....+++.+.......+..+..+.+-.
T Consensus 401 ~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~---------------------- 458 (618)
T PF01347_consen 401 KDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLS---------------------- 458 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHH----------------------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHH----------------------
Q ss_pred hHHHHHHHHHHhCC----------------CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 210 VAWNSVINGFASNG----------------KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 210 ~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
+..|+.-++... -.+.-...+......+ |...-...|.|+.+.|.......+...+...
T Consensus 459 --~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~ 533 (618)
T PF01347_consen 459 --LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG---DEEEKIVYLKALGNLGHPESIPVLLPYIEGK 533 (618)
T ss_dssp --HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT----HHHHHHHHHHHHHHT-GGGHHHHHTTSTTS
T ss_pred --HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHhhccCCchhhHHHHhHhhhc
Q ss_pred CCCCchhHHHHHHHHHH--hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHH
Q 007134 274 GLSDNVNVNNALLDFYS--KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVG 350 (616)
Q Consensus 274 g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ 350 (616)
. ..+..+-.+.|.++. ..-..+++..++-.+-.......-.-+.||...=+..--..+++.|... ...|+....+.
T Consensus 534 ~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 534 E-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp S--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHH
T ss_pred c-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHH
Q ss_pred HHHHH
Q 007134 351 VLYAC 355 (616)
Q Consensus 351 ll~a~ 355 (616)
+.+..
T Consensus 613 v~S~L 617 (618)
T PF01347_consen 613 VYSHL 617 (618)
T ss_dssp HHHHH
T ss_pred HHHhc
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.42 E-value=1.5e+02 Score=30.57 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC---------CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNMLM---------PP-NAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~---------~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+.-.|++..+-.|++..|+++++.+.+ .+ ...++--+.-+|...+++..|.+.|..++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777778888888888877631 11 23455555566666777777777776664
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.35 E-value=1.7e+02 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC
Q 007134 184 LVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444455555555555555543
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.33 E-value=7.7e+02 Score=24.40 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH----------hcCCHHH
Q 007134 330 LELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG----------RAGLVKQ 399 (616)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----------~~g~~~~ 399 (616)
.++++.|.+.++.|.-+.|..+.-.+++.=.+.....+++.+..+ |. -+..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~--rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQ--RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hh--hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888888899999999988888888888899999999988764 22 2334443332 2467777
Q ss_pred HHHHHHhCC
Q 007134 400 AYEYIQNML 408 (616)
Q Consensus 400 A~~~~~~m~ 408 (616)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.25 E-value=2.5e+02 Score=22.71 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=33.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 261 (616)
++..+...+..-.|-++++.+.+.+...+..|....|+.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555556667778888888888777777788777777777776443
No 483
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.09 E-value=8.8e+02 Score=25.02 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 179 FVQNSLVHMYAAFGHVKDACKVFELMSE------RDLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 179 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
..+.-+.+-|..||+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3567788999999999999999988543 12334666666666778888887777776553
No 484
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.78 E-value=6.4e+02 Score=27.55 Aligned_cols=244 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcH----------HHH
Q 007134 94 SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR----------MGE 163 (616)
Q Consensus 94 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~----------~a~ 163 (616)
+.|....+..+......+..++.+.. .|+...++.....+.. |.-+-..+...+...|-++ ..+
T Consensus 284 ~~a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lr 357 (566)
T PF07575_consen 284 EYAQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLR 357 (566)
T ss_dssp HHHHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHH
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFG--HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (616)
+.+-.--...+-.+...|..-+..+..|+ -......++.+.+-++...-.-++..|.+.|..+.|.++.+.+-.. .
T Consensus 358 e~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~ 435 (566)
T PF07575_consen 358 EYLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR--L 435 (566)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--H
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLA 321 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 321 (616)
-...-|...+.-+.+.++......+-..+.+.....+......+++.....--+..-+..+....+ ..-..
T Consensus 436 ~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre---------F~~~~ 506 (566)
T PF07575_consen 436 LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE---------FYELY 506 (566)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH---------HHHHH
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
+.|+..+|.+.+-.+...+..|...-...|..+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 485
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=21.54 E-value=4.4e+02 Score=28.01 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=55.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--------CCCchh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK--------HSGDYV 451 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 451 (616)
++..|-.++.-|...+++++|.++.+-.+ +...|.+|......+.+..-++.++..+.+.+.- -++--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 45556777778888888999988887654 5677888877777777777666666655433311 011112
Q ss_pred hhhHHhHhcccchHHHHHHH
Q 007134 452 LLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~ 471 (616)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 23333444566666666553
No 486
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.51 E-value=2.2e+02 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 007134 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191 (616)
Q Consensus 158 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 191 (616)
+.+.|.+++..+... -..++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcch-hhcChHHHHHHHHHHHHc
Confidence 344555555554332 244566677666655443
No 487
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.48 E-value=4e+02 Score=20.75 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH
Q 007134 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 326 (616)
..-+.+++.++++.++.+...+|..+..++...|..
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 445567778888888888888888888777665543
No 488
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.40 E-value=1.4e+02 Score=29.18 Aligned_cols=76 Identities=5% Similarity=0.012 Sum_probs=50.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHH-HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRT-LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
.+..|+..|...+.--.+.|.+.+.-.+|.+. ...| |+..|-. ----+..+++++.+..++.+.+.++|++|..+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34455666666665555566666666666555 2445 5566643 223456788999999999999999999887654
No 489
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=21.29 E-value=1.4e+02 Score=27.98 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=49.2
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
....++.+.+.+++.+++++-|+....+..++....+.|+++.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567888999999999999999988899999999999999999999999887654
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.05 E-value=4e+02 Score=20.65 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 140 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
.|....|...++.-.....-+. ++|+.....|+..|+.++..+++...-+=..+...+++..|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.68 E-value=3.6e+02 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=9.2
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 007134 317 VVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m 336 (616)
..-|...|++++|+++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.66 E-value=9.3e+02 Score=24.71 Aligned_cols=125 Identities=17% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc------CCHHHHHHHHHhCCCCCcHHHHHHHHHH-
Q 007134 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA------GLVKQAYEYIQNMLMPPNAVIWRTLLGA- 422 (616)
Q Consensus 350 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~m~~~pd~~~~~~ll~a- 422 (616)
.....+.+.+++..|.++|+.+..+ ..+|....+-..+..+++. -++++|.+.++.+...-+...|..+...
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred --HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh------HhcccchHHHHHHHHHhh
Q 007134 423 --CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY------AYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 423 --~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y------~~~g~~~~a~~~~~~m~~ 475 (616)
..+....-++.....+.....-.....+..+.+++ +..|++++|.-.+-+..+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 493
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=20.44 E-value=69 Score=17.07 Aligned_cols=11 Identities=45% Similarity=0.570 Sum_probs=8.0
Q ss_pred chhhHHHHHhh
Q 007134 578 DCHLAIKLISK 588 (616)
Q Consensus 578 ~~~~~~~~~~~ 588 (616)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 46888888763
No 494
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.36 E-value=2.7e+02 Score=28.93 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCCCcH--HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 408 LMPPNA--VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 408 ~~~pd~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++|.. .+..+-++.+.+++++..|-.+.++++++.|... ..+.|++++..-.+
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e~ 348 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACER 348 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHhc
Confidence 455532 4667777888999999999999999999988621 23457777765543
No 495
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.28 E-value=1e+03 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=7.1
Q ss_pred cccccchhhhhhhhc
Q 007134 532 VFADIEEEEKEDALS 546 (616)
Q Consensus 532 ~~~~~~~~~~~~~~~ 546 (616)
.+..++.|-+...+.
T Consensus 447 ~w~~lP~Eik~~Il~ 461 (480)
T PHA03100 447 YWNILPIEIKYKILE 461 (480)
T ss_pred chhhCcHHHHHHHHH
Confidence 344555555444443
Done!