Query 007134
Match_columns 616
No_of_seqs 743 out of 4399
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.2E-37 2.1E-41 335.3 41.4 424 43-476 85-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-34 6.1E-39 315.7 35.9 422 22-459 102-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.3E-28 1.5E-32 255.9 23.1 177 180-356 28-221 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-25 5E-30 231.3 40.1 366 88-461 11-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 9.3E-28 3.2E-32 253.4 20.9 184 109-292 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-25 1.9E-29 226.9 41.1 352 114-475 5-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-22 9.3E-27 214.4 32.5 392 77-476 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-21 6.6E-26 204.3 36.2 291 109-407 27-355 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.5E-26 205.6 34.2 336 127-472 11-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 3.8E-21 1.3E-25 205.6 33.7 391 54-453 20-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.6E-24 195.6 32.5 387 76-476 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 9.4E-19 3.2E-23 188.1 30.4 384 54-449 39-498 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 7.8E-18 2.7E-22 170.5 32.5 322 107-459 2-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.9E-22 168.5 34.3 304 144-476 4-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.1E-23 175.6 22.4 320 88-444 15-343 (449)
16 2xm6_A Protein corresponding t 99.8 6.7E-16 2.3E-20 164.1 40.6 366 74-459 37-452 (490)
17 3hym_B Cell division cycle pro 99.8 2.5E-17 8.4E-22 164.9 27.6 281 180-463 24-321 (330)
18 2ooe_A Cleavage stimulation fa 99.8 1.7E-15 5.9E-20 162.6 39.6 394 73-476 10-492 (530)
19 3hym_B Cell division cycle pro 99.8 3.1E-16 1.1E-20 156.8 31.3 286 107-429 21-321 (330)
20 2xm6_A Protein corresponding t 99.8 5E-15 1.7E-19 157.3 40.4 352 105-477 36-433 (490)
21 1fch_A Peroxisomal targeting s 99.8 4.8E-17 1.6E-21 165.7 23.8 281 188-472 35-355 (368)
22 1b89_A Protein (clathrin heavy 99.8 8.1E-19 2.8E-23 176.9 8.9 252 189-471 14-267 (449)
23 1fch_A Peroxisomal targeting s 99.7 2E-16 6.8E-21 161.1 24.2 284 120-439 37-356 (368)
24 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.4E-20 148.6 29.1 270 187-470 8-288 (291)
25 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.8E-21 163.0 20.3 261 208-472 64-352 (365)
26 4g1t_A Interferon-induced prot 99.7 6E-15 2.1E-19 155.7 32.5 243 222-479 188-462 (472)
27 2ooe_A Cleavage stimulation fa 99.7 3.6E-14 1.2E-18 152.3 39.0 385 54-445 26-495 (530)
28 4eqf_A PEX5-related protein; a 99.7 5.7E-16 2E-20 157.7 21.8 226 144-373 66-309 (365)
29 1xi4_A Clathrin heavy chain; a 99.7 9.1E-14 3.1E-18 155.5 40.0 346 78-471 987-1340(1630)
30 3cv0_A Peroxisome targeting si 99.7 1E-15 3.5E-20 152.8 20.5 257 212-473 24-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 5.2E-15 1.8E-19 145.5 23.3 245 216-475 6-263 (291)
32 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-17 2.4E-21 175.2 8.5 128 275-403 123-258 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 8.2E-17 2.8E-21 174.6 9.0 151 174-324 123-286 (1134)
34 4g1t_A Interferon-induced prot 99.7 1.2E-13 4.2E-18 145.6 33.3 364 75-454 50-471 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.6E-12 5.4E-17 145.7 42.8 370 53-469 998-1377(1630)
36 3cv0_A Peroxisome targeting si 99.7 1.7E-14 5.9E-19 143.8 24.9 218 151-373 29-268 (327)
37 3uq3_A Heat shock protein STI1 99.6 1E-13 3.6E-18 133.0 20.0 212 251-475 12-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.7E-18 132.8 19.4 223 211-443 7-237 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.1E-13 1.4E-17 130.3 22.8 241 221-470 17-269 (275)
40 2pl2_A Hypothetical conserved 99.5 1.7E-13 5.8E-18 128.4 18.0 194 276-473 2-211 (217)
41 3u4t_A TPR repeat-containing p 99.5 7E-13 2.4E-17 128.5 20.4 240 181-458 6-266 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 8.8E-13 3E-17 138.2 20.3 364 54-475 17-420 (452)
43 2pl2_A Hypothetical conserved 99.5 2E-12 7E-17 121.0 19.4 195 106-305 3-211 (217)
44 2h6f_A Protein farnesyltransfe 99.5 2.6E-12 8.8E-17 130.7 21.1 242 211-458 99-364 (382)
45 1ouv_A Conserved hypothetical 99.5 2.7E-11 9.1E-16 117.6 27.5 224 209-445 6-254 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-12 9.3E-17 124.4 20.4 214 121-339 18-244 (275)
47 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-11 3.9E-16 118.5 24.2 205 209-448 37-244 (252)
48 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-12 9.5E-17 134.3 20.4 344 113-478 8-389 (452)
49 1ouv_A Conserved hypothetical 99.5 2.4E-11 8.3E-16 117.9 25.7 223 243-477 5-252 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 1.9E-12 6.6E-17 122.9 17.4 212 209-456 23-236 (243)
51 3u4t_A TPR repeat-containing p 99.4 1.5E-11 5E-16 119.2 23.5 227 143-373 3-249 (272)
52 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-12 7.6E-17 122.5 16.9 197 277-476 21-222 (243)
53 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.4E-16 114.3 23.0 166 281-448 44-217 (225)
54 4a1s_A PINS, partner of inscut 99.4 1.7E-12 5.9E-17 134.1 17.0 265 180-475 50-371 (411)
55 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.6E-16 116.1 20.6 198 277-476 6-211 (225)
56 2ho1_A Type 4 fimbrial biogene 99.4 4.5E-11 1.6E-15 114.2 24.7 194 178-373 37-237 (252)
57 3sf4_A G-protein-signaling mod 99.4 4.4E-12 1.5E-16 130.4 18.5 272 177-475 8-335 (406)
58 3ro2_A PINS homolog, G-protein 99.4 5E-12 1.7E-16 126.0 17.7 197 280-476 84-332 (338)
59 2h6f_A Protein farnesyltransfe 99.4 8.9E-12 3.1E-16 126.7 19.6 226 245-475 98-347 (382)
60 3sf4_A G-protein-signaling mod 99.4 1.8E-11 6.3E-16 125.7 20.5 292 106-430 7-364 (406)
61 4a1s_A PINS, partner of inscut 99.4 1.8E-11 6.1E-16 126.4 19.3 276 109-445 49-375 (411)
62 4abn_A Tetratricopeptide repea 99.4 5.4E-12 1.9E-16 133.0 15.5 208 261-473 85-318 (474)
63 3vtx_A MAMA; tetratricopeptide 99.4 3.3E-11 1.1E-15 109.3 18.6 164 310-476 5-170 (184)
64 3ro2_A PINS homolog, G-protein 99.3 4.6E-11 1.6E-15 118.9 20.4 99 347-445 225-335 (338)
65 4e6h_A MRNA 3'-END-processing 99.3 1.4E-08 4.8E-13 110.2 39.8 398 42-447 66-575 (679)
66 2ond_A Cleavage stimulation fa 99.3 4.5E-10 1.5E-14 111.2 25.7 220 226-449 33-277 (308)
67 3vtx_A MAMA; tetratricopeptide 99.3 3.4E-11 1.2E-15 109.2 15.6 167 278-447 4-175 (184)
68 3ulq_A Response regulator aspa 99.3 1.5E-10 5.1E-15 118.4 20.8 228 217-444 111-370 (383)
69 3nf1_A KLC 1, kinesin light ch 99.3 2.2E-11 7.6E-16 120.1 12.7 239 178-444 27-309 (311)
70 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.4E-16 121.8 10.4 197 279-475 69-306 (311)
71 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.3E-14 107.9 24.0 83 292-374 182-270 (308)
72 4e6h_A MRNA 3'-END-processing 99.2 1.7E-08 5.9E-13 109.5 34.3 410 63-477 55-571 (679)
73 3ulq_A Response regulator aspa 99.2 7.9E-10 2.7E-14 113.0 22.7 220 184-407 109-365 (383)
74 4gyw_A UDP-N-acetylglucosamine 99.2 1.2E-10 4E-15 128.0 17.1 161 278-443 8-175 (723)
75 3as5_A MAMA; tetratricopeptide 99.2 3.8E-10 1.3E-14 101.6 16.5 160 281-475 10-172 (186)
76 1hz4_A MALT regulatory protein 99.2 8.6E-09 3E-13 104.7 27.4 193 283-475 97-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5.2E-14 97.6 18.8 169 244-448 8-179 (186)
78 4abn_A Tetratricopeptide repea 99.2 8.8E-10 3E-14 116.0 18.9 192 178-373 102-320 (474)
79 3q15_A PSP28, response regulat 99.2 1.2E-09 4E-14 111.6 18.9 223 217-439 109-362 (378)
80 3q15_A PSP28, response regulat 99.2 1.2E-08 4.2E-13 104.0 26.5 222 252-474 109-363 (378)
81 4i17_A Hypothetical protein; T 99.1 9.7E-10 3.3E-14 103.3 16.7 187 278-475 6-208 (228)
82 1hz4_A MALT regulatory protein 99.1 2.1E-08 7.2E-13 101.8 27.1 259 114-372 20-320 (373)
83 4i17_A Hypothetical protein; T 99.1 2.7E-09 9.4E-14 100.2 18.5 203 242-456 5-223 (228)
84 1qqe_A Vesicular transport pro 99.0 2.8E-09 9.5E-14 104.5 14.6 163 311-473 78-266 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.0 4.4E-09 1.5E-13 115.5 16.3 157 244-406 9-170 (723)
86 3edt_B KLC 2, kinesin light ch 99.0 4.4E-09 1.5E-13 101.7 13.7 221 255-475 12-280 (283)
87 1qqe_A Vesicular transport pro 99.0 1.7E-08 5.7E-13 98.9 17.8 242 161-445 3-272 (292)
88 3qky_A Outer membrane assembly 99.0 4.3E-08 1.5E-12 94.1 20.3 204 278-522 14-247 (261)
89 3edt_B KLC 2, kinesin light ch 99.0 2.5E-08 8.4E-13 96.3 18.4 197 246-442 45-281 (283)
90 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.5E-12 91.3 21.5 238 188-447 23-287 (310)
91 2fo7_A Synthetic consensus TPR 98.9 6.1E-08 2.1E-12 81.7 15.3 131 312-445 3-135 (136)
92 3qky_A Outer membrane assembly 98.8 6.9E-08 2.4E-12 92.6 16.8 203 242-465 13-250 (261)
93 2fo7_A Synthetic consensus TPR 98.8 3.5E-08 1.2E-12 83.2 12.7 128 347-476 3-132 (136)
94 4ga2_A E3 SUMO-protein ligase 98.8 3.8E-09 1.3E-13 92.2 6.6 139 320-462 7-149 (150)
95 3mv2_B Coatomer subunit epsilo 98.8 1.8E-07 6.1E-12 90.4 18.7 238 217-476 21-282 (310)
96 2pzi_A Probable serine/threoni 98.8 1E-08 3.4E-13 113.0 11.1 168 290-462 402-583 (681)
97 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.5E-07 5.3E-12 88.0 17.8 180 279-478 4-215 (225)
98 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.5E-12 93.0 14.9 174 296-474 103-282 (287)
99 3rjv_A Putative SEL1 repeat pr 98.7 3.7E-07 1.3E-11 84.5 17.7 171 298-477 5-198 (212)
100 2vsy_A XCC0866; transferase, g 98.7 4E-07 1.4E-11 98.1 20.6 160 292-454 2-169 (568)
101 4ga2_A E3 SUMO-protein ligase 98.7 1.6E-08 5.5E-13 88.1 7.3 122 351-475 3-128 (150)
102 2uy1_A Cleavage stimulation fa 98.7 2.4E-05 8.2E-10 82.2 31.4 335 92-440 29-411 (493)
103 2ifu_A Gamma-SNAP; membrane fu 98.7 6E-07 2.1E-11 88.4 17.6 219 222-468 4-253 (307)
104 3gyz_A Chaperone protein IPGC; 98.7 5.7E-08 1.9E-12 84.5 8.9 101 376-476 30-133 (151)
105 2pzi_A Probable serine/threoni 98.7 4.3E-07 1.5E-11 99.9 18.1 188 255-448 402-608 (681)
106 2vsy_A XCC0866; transferase, g 98.7 1.1E-07 3.8E-12 102.5 13.2 151 323-477 2-158 (568)
107 2r5s_A Uncharacterized protein 98.6 2.9E-07 1E-11 82.4 12.9 75 400-474 93-171 (176)
108 3urz_A Uncharacterized protein 98.6 4E-07 1.4E-11 84.0 14.1 126 315-445 59-189 (208)
109 3dra_A Protein farnesyltransfe 98.6 4.2E-06 1.4E-10 81.5 21.7 149 324-475 124-286 (306)
110 2r5s_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 79.8 14.9 154 181-337 9-171 (176)
111 4gco_A Protein STI-1; structur 98.6 2.3E-07 7.7E-12 78.0 10.3 109 346-456 14-124 (126)
112 3urz_A Uncharacterized protein 98.6 1.5E-06 5.2E-11 80.1 16.9 128 285-417 60-194 (208)
113 3qou_A Protein YBBN; thioredox 98.6 1.9E-06 6.7E-11 83.8 18.3 158 144-303 118-279 (287)
114 4gco_A Protein STI-1; structur 98.6 1.2E-07 4.1E-12 79.7 8.3 99 377-475 8-109 (126)
115 2vgx_A Chaperone SYCD; alterna 98.6 8.8E-08 3E-12 83.1 7.6 95 381-475 21-117 (148)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 9.2E-07 3.2E-11 87.1 15.9 91 246-337 78-182 (307)
117 3u3w_A Transcriptional activat 98.6 3.6E-06 1.2E-10 82.2 19.8 160 316-475 81-265 (293)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.4E-06 8.3E-11 79.7 17.4 186 243-449 3-220 (225)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9E-07 3.1E-11 81.6 13.5 123 349-476 10-150 (213)
120 3dra_A Protein farnesyltransfe 98.5 2.1E-05 7E-10 76.6 23.5 224 224-453 48-299 (306)
121 3rjv_A Putative SEL1 repeat pr 98.5 3.2E-06 1.1E-10 78.1 16.7 172 95-275 4-199 (212)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 1.8E-06 6.2E-11 84.3 15.7 163 312-474 77-264 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.7E-06 1.6E-10 76.7 17.6 144 283-446 10-154 (213)
124 1a17_A Serine/threonine protei 98.5 1.7E-06 5.8E-11 75.9 13.3 127 347-475 15-145 (166)
125 2c2l_A CHIP, carboxy terminus 98.5 5.1E-07 1.8E-11 87.7 10.5 191 280-476 5-199 (281)
126 1na0_A Designed protein CTPR3; 98.5 1.8E-06 6E-11 71.4 12.2 114 346-461 10-125 (125)
127 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.7E-11 75.5 10.8 95 381-475 18-114 (142)
128 2vyi_A SGTA protein; chaperone 98.4 1.5E-06 5.1E-11 72.5 11.1 117 345-463 12-130 (131)
129 2lni_A Stress-induced-phosphop 98.4 1.8E-06 6.2E-11 72.4 11.6 115 346-462 17-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.4 1E-06 3.5E-11 88.0 11.2 94 381-474 196-292 (336)
131 2uy1_A Cleavage stimulation fa 98.4 1.7E-05 5.7E-10 83.4 20.9 340 93-473 11-380 (493)
132 3u3w_A Transcriptional activat 98.4 1.7E-05 5.9E-10 77.2 19.5 87 185-271 82-182 (293)
133 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-05 3.5E-10 78.9 17.5 162 281-442 77-266 (293)
134 4f3v_A ESX-1 secretion system 98.4 1.6E-06 5.6E-11 82.6 10.5 135 314-453 106-247 (282)
135 2e2e_A Formate-dependent nitri 98.3 1E-06 3.5E-11 78.7 8.1 119 356-476 21-144 (177)
136 3upv_A Heat shock protein STI1 98.3 1.4E-06 4.9E-11 72.8 8.2 96 381-476 4-101 (126)
137 2vgx_A Chaperone SYCD; alterna 98.3 1.6E-06 5.3E-11 75.1 8.3 102 346-449 22-125 (148)
138 1hxi_A PEX5, peroxisome target 98.3 1.6E-06 5.6E-11 72.0 8.1 95 382-476 18-114 (121)
139 3gw4_A Uncharacterized protein 98.3 1E-05 3.5E-10 73.6 13.7 151 291-441 4-175 (203)
140 3gw4_A Uncharacterized protein 98.3 6.3E-06 2.2E-10 75.0 12.2 46 191-236 5-53 (203)
141 2kck_A TPR repeat; tetratricop 98.3 4.3E-06 1.5E-10 67.6 9.6 97 381-477 6-107 (112)
142 2fbn_A 70 kDa peptidylprolyl i 98.2 7.8E-06 2.7E-10 74.5 11.7 95 382-476 89-186 (198)
143 4f3v_A ESX-1 secretion system 98.2 7.1E-06 2.4E-10 78.2 11.5 181 291-476 18-237 (282)
144 2c2l_A CHIP, carboxy terminus 98.2 6.1E-06 2.1E-10 80.0 11.3 13 395-407 184-196 (281)
145 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-06 1.1E-10 74.3 8.6 100 347-448 13-114 (164)
146 2e2e_A Formate-dependent nitri 98.2 5.3E-06 1.8E-10 74.0 10.0 125 321-448 21-150 (177)
147 3gyz_A Chaperone protein IPGC; 98.2 6.4E-06 2.2E-10 71.4 10.1 99 346-446 37-137 (151)
148 4gcn_A Protein STI-1; structur 98.2 3.6E-06 1.2E-10 70.7 8.1 94 382-475 9-111 (127)
149 2xcb_A PCRH, regulatory protei 98.2 6.1E-06 2.1E-10 70.7 9.7 105 346-452 19-125 (142)
150 3q49_B STIP1 homology and U bo 98.2 7.8E-06 2.7E-10 69.1 10.3 98 379-476 7-106 (137)
151 1elw_A TPR1-domain of HOP; HOP 98.2 1.6E-05 5.5E-10 64.7 11.7 107 347-455 6-114 (118)
152 3sz7_A HSC70 cochaperone (SGT) 98.2 1.1E-05 3.7E-10 71.0 11.1 96 309-407 10-105 (164)
153 3q7a_A Farnesyltransferase alp 98.2 0.0011 3.7E-08 65.3 26.2 178 111-293 57-256 (349)
154 3q7a_A Farnesyltransferase alp 98.2 0.00074 2.5E-08 66.5 24.8 172 219-395 64-256 (349)
155 1a17_A Serine/threonine protei 98.2 3.5E-05 1.2E-09 67.2 14.1 127 311-440 14-144 (166)
156 1na0_A Designed protein CTPR3; 98.1 4.2E-05 1.4E-09 62.8 13.5 91 181-272 12-105 (125)
157 3upv_A Heat shock protein STI1 98.1 1E-05 3.5E-10 67.5 9.6 95 347-443 6-102 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.1 1.1E-05 3.7E-10 65.8 9.5 96 381-476 4-101 (118)
159 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2E-05 6.7E-10 82.2 13.4 95 381-475 317-414 (457)
160 2dba_A Smooth muscle cell asso 98.1 1.7E-05 5.7E-10 67.9 10.8 95 381-475 28-127 (148)
161 2lni_A Stress-induced-phosphop 98.1 3.8E-05 1.3E-09 64.1 12.4 114 107-222 15-131 (133)
162 2dba_A Smooth muscle cell asso 98.1 4E-05 1.4E-09 65.4 12.5 108 346-456 29-142 (148)
163 1wao_1 Serine/threonine protei 98.1 4.3E-05 1.5E-09 80.0 14.7 116 287-405 14-134 (477)
164 1wao_1 Serine/threonine protei 98.1 9.5E-06 3.2E-10 85.0 9.6 115 355-471 16-134 (477)
165 3rkv_A Putative peptidylprolyl 98.1 1.7E-05 5.7E-10 69.6 9.7 63 413-475 63-125 (162)
166 3dss_A Geranylgeranyl transfer 98.0 0.0007 2.4E-08 66.3 22.0 187 260-451 90-313 (331)
167 4b4t_Q 26S proteasome regulato 98.0 7.4E-05 2.5E-09 77.0 16.1 162 313-474 58-243 (434)
168 2vyi_A SGTA protein; chaperone 98.0 9.2E-05 3.1E-09 61.3 13.4 116 311-429 13-130 (131)
169 3q49_B STIP1 homology and U bo 98.0 3.2E-05 1.1E-09 65.3 10.5 101 344-446 8-110 (137)
170 1p5q_A FKBP52, FK506-binding p 98.0 3.3E-05 1.1E-09 76.9 11.8 143 107-271 146-292 (336)
171 3dss_A Geranylgeranyl transfer 98.0 0.00045 1.5E-08 67.7 19.3 180 295-477 90-305 (331)
172 2fbn_A 70 kDa peptidylprolyl i 98.0 9.2E-06 3.1E-10 74.0 6.6 161 82-264 10-176 (198)
173 2kck_A TPR repeat; tetratricop 98.0 6.1E-05 2.1E-09 60.5 10.9 98 348-447 9-111 (112)
174 2hr2_A Hypothetical protein; a 98.0 1.6E-05 5.5E-10 68.4 7.5 61 415-475 59-130 (159)
175 1elr_A TPR2A-domain of HOP; HO 98.0 2.9E-05 9.9E-10 64.5 8.9 107 348-457 7-122 (131)
176 3k9i_A BH0479 protein; putativ 97.9 5.4E-06 1.9E-10 68.3 4.0 82 394-475 3-89 (117)
177 1hxi_A PEX5, peroxisome target 97.9 3.8E-05 1.3E-09 63.6 9.1 97 349-447 21-119 (121)
178 2xev_A YBGF; tetratricopeptide 97.9 2.4E-05 8E-10 65.3 7.4 90 386-475 7-104 (129)
179 3ro3_A PINS homolog, G-protein 97.9 0.00012 4E-09 63.2 11.8 60 313-372 12-76 (164)
180 1elr_A TPR2A-domain of HOP; HO 97.9 3.2E-05 1.1E-09 64.3 7.5 95 381-475 4-107 (131)
181 1ihg_A Cyclophilin 40; ppiase 97.9 5.8E-05 2E-09 76.1 10.7 138 310-469 223-363 (370)
182 4b4t_Q 26S proteasome regulato 97.8 0.00037 1.3E-08 71.7 17.0 122 286-407 102-242 (434)
183 3rkv_A Putative peptidylprolyl 97.8 3.5E-05 1.2E-09 67.5 7.7 67 381-447 63-131 (162)
184 3ro3_A PINS homolog, G-protein 97.8 6E-05 2.1E-09 65.1 8.9 130 346-475 10-157 (164)
185 2if4_A ATFKBP42; FKBP-like, al 97.8 2.6E-05 8.8E-10 77.8 7.2 147 310-476 179-328 (338)
186 1dce_A Protein (RAB geranylger 97.8 0.00065 2.2E-08 72.4 18.4 168 295-465 45-244 (567)
187 3n71_A Histone lysine methyltr 97.8 0.00018 6.2E-09 75.0 13.5 123 355-477 319-465 (490)
188 2hr2_A Hypothetical protein; a 97.8 0.00013 4.4E-09 62.8 10.1 72 383-454 59-143 (159)
189 2xev_A YBGF; tetratricopeptide 97.8 0.00017 5.8E-09 59.9 10.8 96 353-448 10-111 (129)
190 2if4_A ATFKBP42; FKBP-like, al 97.8 7.2E-05 2.4E-09 74.5 9.5 152 279-447 179-333 (338)
191 4gcn_A Protein STI-1; structur 97.8 0.00036 1.2E-08 58.1 12.4 25 314-338 87-111 (127)
192 3k9i_A BH0479 protein; putativ 97.7 2.8E-05 9.6E-10 63.9 4.5 91 358-449 3-97 (117)
193 2l6j_A TPR repeat-containing p 97.7 7.6E-05 2.6E-09 60.1 6.7 92 380-471 3-102 (111)
194 3ma5_A Tetratricopeptide repea 97.7 0.0001 3.4E-09 58.6 7.1 64 412-475 6-69 (100)
195 1ihg_A Cyclophilin 40; ppiase 97.6 0.00022 7.6E-09 71.8 10.4 112 346-476 224-336 (370)
196 1zu2_A Mitochondrial import re 97.6 4.2E-05 1.4E-09 65.7 3.6 85 392-476 13-120 (158)
197 1na3_A Designed protein CTPR2; 97.5 0.00034 1.2E-08 53.8 8.1 81 381-461 9-91 (91)
198 2kat_A Uncharacterized protein 97.5 0.00029 9.8E-09 57.4 7.8 76 400-475 4-81 (115)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00088 3E-08 69.6 12.9 120 311-434 269-406 (457)
200 3bee_A Putative YFRE protein; 97.2 0.001 3.5E-08 51.8 7.8 67 411-477 4-73 (93)
201 3qwp_A SET and MYND domain-con 97.2 0.00082 2.8E-08 68.9 9.3 116 388-521 294-427 (429)
202 2l6j_A TPR repeat-containing p 97.2 0.00062 2.1E-08 54.5 6.3 66 411-476 2-67 (111)
203 3n71_A Histone lysine methyltr 97.2 0.002 6.8E-08 67.1 11.6 123 319-441 318-463 (490)
204 3qww_A SET and MYND domain-con 97.0 0.00075 2.6E-08 69.1 6.8 103 394-514 311-431 (433)
205 1dce_A Protein (RAB geranylger 97.0 0.0061 2.1E-07 64.9 14.2 150 323-476 42-221 (567)
206 1klx_A Cysteine rich protein B 97.0 0.011 3.8E-07 49.8 13.0 110 324-442 9-126 (138)
207 1zu2_A Mitochondrial import re 97.0 0.00034 1.2E-08 60.0 3.1 87 359-447 16-125 (158)
208 1klx_A Cysteine rich protein B 97.0 0.0037 1.3E-07 52.7 9.6 112 359-478 9-128 (138)
209 2kat_A Uncharacterized protein 96.9 0.0015 5.2E-08 52.9 6.6 80 364-445 4-85 (115)
210 1na3_A Designed protein CTPR2; 96.9 0.0016 5.3E-08 49.9 6.2 65 412-476 8-72 (91)
211 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4E-06 57.6 21.8 130 147-305 633-762 (814)
212 3ma5_A Tetratricopeptide repea 96.5 0.01 3.4E-07 46.6 8.4 61 311-372 8-68 (100)
213 3ly7_A Transcriptional activat 96.5 0.029 9.8E-07 55.2 13.1 138 307-446 191-343 (372)
214 3qww_A SET and MYND domain-con 96.5 0.011 3.6E-07 60.5 10.1 91 357-447 310-421 (433)
215 1wy6_A Hypothetical protein ST 96.4 0.11 3.6E-06 42.4 13.2 140 321-479 18-157 (172)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.11 3.9E-06 57.7 18.9 42 189-232 610-652 (814)
217 3qwp_A SET and MYND domain-con 96.3 0.018 6.3E-07 58.8 11.2 95 355-449 297-412 (429)
218 1pc2_A Mitochondria fission pr 96.3 0.012 4.2E-07 49.7 8.1 65 411-475 30-99 (152)
219 2kc7_A BFR218_protein; tetratr 96.3 0.014 4.7E-07 45.4 8.0 79 387-473 6-87 (99)
220 2kc7_A BFR218_protein; tetratr 96.3 0.005 1.7E-07 48.0 5.2 58 419-476 6-64 (99)
221 3mkq_B Coatomer subunit alpha; 96.0 0.25 8.6E-06 42.8 14.7 129 287-439 13-141 (177)
222 3ly7_A Transcriptional activat 95.6 0.039 1.3E-06 54.2 9.2 131 342-476 191-339 (372)
223 3mkq_B Coatomer subunit alpha; 95.5 1.1 3.7E-05 38.9 16.7 129 186-336 13-141 (177)
224 3u64_A Protein TP_0956; tetrat 95.3 0.042 1.4E-06 51.8 7.9 85 398-482 180-275 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.1 0.092 3.2E-06 41.4 8.5 69 381-449 5-82 (104)
226 3bee_A Putative YFRE protein; 95.1 0.11 3.6E-06 40.1 8.5 67 379-445 4-75 (93)
227 3lvg_A Clathrin heavy chain 1; 94.6 0.0035 1.2E-07 62.9 -1.6 239 74-331 52-325 (624)
228 1pc2_A Mitochondria fission pr 94.1 0.18 6.2E-06 42.5 8.1 84 362-447 15-105 (152)
229 1nzn_A CGI-135 protein, fissio 93.9 0.13 4.5E-06 41.8 6.5 64 412-475 34-102 (126)
230 1qsa_A Protein (soluble lytic 93.7 8.5 0.00029 40.9 23.1 115 324-441 228-347 (618)
231 1y8m_A FIS1; mitochondria, unk 93.1 1.1 3.8E-05 37.0 10.9 91 410-526 36-130 (144)
232 3u64_A Protein TP_0956; tetrat 92.5 0.43 1.5E-05 44.9 8.6 103 362-473 180-295 (301)
233 2v5f_A Prolyl 4-hydroxylase su 91.4 0.38 1.3E-05 37.7 6.1 64 412-475 4-74 (104)
234 1wy6_A Hypothetical protein ST 91.0 5.6 0.00019 32.5 14.3 82 291-374 73-154 (172)
235 4gns_B Protein CSD3, chitin bi 90.9 0.86 3E-05 49.4 10.1 54 421-474 345-398 (754)
236 3lvg_A Clathrin heavy chain 1; 90.9 0.0034 1.2E-07 63.0 -7.8 198 177-393 53-275 (624)
237 2wpv_A GET4, UPF0363 protein Y 90.3 13 0.00044 35.5 20.6 169 180-374 35-217 (312)
238 3o48_A Mitochondria fission 1 88.4 1.3 4.5E-05 36.1 6.9 65 411-475 38-106 (134)
239 1nzn_A CGI-135 protein, fissio 88.0 3.1 0.00011 33.6 8.9 71 379-449 33-110 (126)
240 4h7y_A Dual specificity protei 88.0 5.1 0.00018 33.4 10.2 98 104-203 9-119 (161)
241 1v54_E Cytochrome C oxidase po 87.7 3 0.0001 32.0 7.9 73 325-408 25-97 (109)
242 3lpz_A GET4 (YOR164C homolog); 87.5 21 0.00072 34.3 21.9 168 180-373 37-215 (336)
243 4h7y_A Dual specificity protei 87.3 2 7E-05 35.8 7.5 54 426-479 73-126 (161)
244 2wpv_A GET4, UPF0363 protein Y 86.6 23 0.00078 33.8 17.8 168 77-271 34-215 (312)
245 3lpz_A GET4 (YOR164C homolog); 86.0 25 0.00087 33.8 20.5 168 77-271 36-214 (336)
246 2p58_C Putative type III secre 85.8 9.7 0.00033 29.1 9.7 87 157-248 21-107 (116)
247 2uwj_G Type III export protein 85.0 9.2 0.00031 29.2 9.2 87 157-248 20-106 (115)
248 4gns_B Protein CSD3, chitin bi 83.5 8.9 0.0003 41.6 12.4 124 80-205 252-398 (754)
249 2uwj_G Type III export protein 82.6 14 0.00048 28.2 9.4 87 259-350 21-107 (115)
250 2y69_E Cytochrome C oxidase su 82.1 6.5 0.00022 31.9 7.9 74 325-409 68-141 (152)
251 2p58_C Putative type III secre 82.0 15 0.00051 28.1 10.2 88 258-350 21-108 (116)
252 4ady_A RPN2, 26S proteasome re 81.5 57 0.0019 36.3 17.8 295 112-416 343-664 (963)
253 4b4t_P 26S proteasome regulato 81.5 48 0.0016 33.5 17.2 185 223-407 30-244 (445)
254 3ffl_A Anaphase-promoting comp 78.7 15 0.00051 31.2 9.6 27 382-408 123-149 (167)
255 4fhn_B Nucleoporin NUP120; pro 78.3 40 0.0014 38.9 16.5 117 278-397 841-987 (1139)
256 4fhn_B Nucleoporin NUP120; pro 78.1 44 0.0015 38.5 16.8 63 415-477 901-968 (1139)
257 2ff4_A Probable regulatory pro 77.7 3.3 0.00011 41.3 6.4 58 417-474 175-232 (388)
258 2ff4_A Probable regulatory pro 75.8 17 0.00057 36.1 11.0 67 315-382 176-246 (388)
259 4ady_A RPN2, 26S proteasome re 75.2 1.1E+02 0.0037 34.1 25.4 251 218-475 383-657 (963)
260 3ltm_A Alpha-REP4; protein eng 74.7 43 0.0015 29.3 19.4 48 176-223 31-78 (211)
261 1v54_E Cytochrome C oxidase po 73.9 17 0.00059 27.9 7.7 59 227-286 28-86 (109)
262 3ffl_A Anaphase-promoting comp 71.4 43 0.0015 28.4 10.5 110 83-206 27-150 (167)
263 1zbp_A Hypothetical protein VP 68.0 30 0.001 32.0 9.6 117 320-448 7-135 (273)
264 3esl_A Checkpoint serine/threo 67.1 57 0.002 28.6 10.8 103 398-526 61-169 (202)
265 3o48_A Mitochondria fission 1 66.5 40 0.0014 27.4 9.0 34 414-447 79-112 (134)
266 2qx5_A Nucleoporin NIC96; mRNA 66.3 1E+02 0.0034 32.8 14.7 22 391-412 548-569 (661)
267 1wdy_A 2-5A-dependent ribonucl 65.6 53 0.0018 29.9 11.6 47 257-303 192-240 (285)
268 3ltj_A Alpharep-4; protein eng 62.8 74 0.0025 27.4 19.8 48 278-325 89-136 (201)
269 1y8m_A FIS1; mitochondria, unk 60.1 71 0.0024 26.3 10.4 69 379-447 37-111 (144)
270 2y69_E Cytochrome C oxidase su 58.4 44 0.0015 27.2 7.6 59 228-287 72-130 (152)
271 2nsz_A Programmed cell death p 56.1 72 0.0025 25.7 9.0 64 181-244 10-78 (129)
272 3txn_A 26S proteasome regulato 53.7 1.7E+02 0.0059 28.7 22.5 55 149-203 105-164 (394)
273 4b4t_R RPN7, 26S proteasome re 52.3 43 0.0015 33.6 8.7 95 281-375 133-238 (429)
274 1zbp_A Hypothetical protein VP 52.2 14 0.00049 34.1 4.5 57 389-445 5-63 (273)
275 1wdy_A 2-5A-dependent ribonucl 52.1 81 0.0028 28.6 10.3 16 289-304 112-127 (285)
276 3mv2_A Coatomer subunit alpha; 51.9 1.6E+02 0.0056 27.9 12.2 59 405-477 197-257 (325)
277 4b4t_P 26S proteasome regulato 49.6 2.1E+02 0.0073 28.6 22.3 193 192-404 30-261 (445)
278 4b4t_R RPN7, 26S proteasome re 47.5 88 0.003 31.3 10.1 59 348-407 134-194 (429)
279 2ion_A PDCD4, programmed cell 47.5 67 0.0023 26.8 7.7 63 181-243 12-79 (152)
280 1k1a_A B-cell lymphoma 3-encod 47.1 97 0.0033 27.3 9.7 17 188-204 86-102 (241)
281 3ltm_A Alpha-REP4; protein eng 44.4 1.5E+02 0.0053 25.5 20.4 93 125-224 18-110 (211)
282 2nsz_A Programmed cell death p 41.8 76 0.0026 25.5 7.0 62 283-344 11-77 (129)
283 3jxi_A Vanilloid receptor-rela 41.0 49 0.0017 29.9 6.7 89 116-204 10-116 (260)
284 1qsa_A Protein (soluble lytic 40.9 3.4E+02 0.012 28.5 39.9 395 60-480 56-483 (618)
285 1k1a_A B-cell lymphoma 3-encod 40.6 1.5E+02 0.005 26.0 9.8 51 153-203 16-68 (241)
286 4b4t_S RPN3, 26S proteasome re 39.6 3.3E+02 0.011 27.9 13.8 178 279-479 231-432 (523)
287 3hra_A Ankyrin repeat family p 39.1 1.4E+02 0.0047 25.4 9.0 108 88-204 14-129 (201)
288 3ltj_A Alpharep-4; protein eng 38.4 1.8E+02 0.0063 24.7 21.1 153 177-338 27-179 (201)
289 2qx5_A Nucleoporin NIC96; mRNA 36.4 1.7E+02 0.0058 31.1 10.4 43 110-154 155-197 (661)
290 4a1g_A Mitotic checkpoint seri 36.3 1E+02 0.0034 25.7 6.9 77 398-480 52-134 (152)
291 3esl_A Checkpoint serine/threo 34.9 1.3E+02 0.0046 26.3 7.8 66 110-176 82-148 (202)
292 2d2s_A Exocyst complex compone 33.3 1.4E+02 0.005 26.8 8.1 23 114-136 24-46 (235)
293 2ion_A PDCD4, programmed cell 33.2 72 0.0025 26.6 5.6 61 283-343 13-78 (152)
294 3eu9_A Huntingtin-interacting 32.8 2E+02 0.0069 24.9 9.4 16 188-203 116-131 (240)
295 1bpo_A Protein (clathrin); cla 32.7 4E+02 0.014 26.8 12.7 138 157-306 343-483 (494)
296 2wvi_A Mitotic checkpoint seri 31.6 1.4E+02 0.0048 25.2 7.1 81 397-480 46-129 (164)
297 2l0z_A Glycoprotein G2; zinc-b 31.2 15 0.00053 22.5 0.8 18 598-615 11-29 (42)
298 3hra_A Ankyrin repeat family p 30.9 1.5E+02 0.0053 25.0 8.0 17 188-204 12-28 (201)
299 4a1g_A Mitotic checkpoint seri 30.8 1.2E+02 0.004 25.3 6.4 47 96-142 84-135 (152)
300 1ug3_A EIF4GI, eukaryotic prot 30.4 3.1E+02 0.011 26.1 10.6 61 181-241 14-78 (339)
301 3eu9_A Huntingtin-interacting 29.7 1.3E+02 0.0044 26.3 7.5 18 186-203 81-98 (240)
302 2zu6_B Programmed cell death p 29.5 3.6E+02 0.012 25.3 12.8 61 313-374 169-231 (307)
303 2fe3_A Peroxide operon regulat 28.8 1.6E+02 0.0055 24.0 7.1 26 113-138 26-51 (145)
304 3ljn_A Hypothetical protein; a 28.6 1.3E+02 0.0045 28.7 7.8 15 392-406 252-266 (364)
305 1oyz_A Hypothetical protein YI 28.4 3.3E+02 0.011 24.6 23.7 82 276-360 139-221 (280)
306 2fe3_A Peroxide operon regulat 28.1 2.2E+02 0.0074 23.2 7.8 46 213-258 25-70 (145)
307 4b4t_S RPN3, 26S proteasome re 27.9 1.6E+02 0.0054 30.2 8.1 60 346-407 232-296 (523)
308 2k0q_A Putative uncharacterize 26.8 14 0.00048 25.8 0.1 22 593-614 9-30 (74)
309 2xig_A Ferric uptake regulatio 26.7 1.6E+02 0.0056 24.1 6.9 43 150-192 33-75 (150)
310 2d2s_A Exocyst complex compone 26.6 1.4E+02 0.0049 26.8 6.9 27 379-405 89-115 (235)
311 1n11_A Ankyrin; clathrin, BAND 26.0 4.6E+02 0.016 25.5 11.6 109 86-204 21-136 (437)
312 3ygs_P Procaspase 9; apoptosis 25.8 75 0.0026 24.0 4.1 36 92-127 52-87 (97)
313 3qye_A TBC1 domain family memb 25.7 4.1E+02 0.014 25.1 10.5 42 164-205 209-250 (331)
314 3ygs_P Procaspase 9; apoptosis 25.6 1E+02 0.0035 23.2 4.9 38 293-330 51-88 (97)
315 3b7b_A Euchromatic histone-lys 25.5 1.7E+02 0.0057 25.6 7.4 17 187-203 83-99 (237)
316 3kea_A K1L; tropism, ANK repea 24.0 4.1E+02 0.014 24.1 10.3 20 185-204 133-152 (285)
317 1oyz_A Hypothetical protein YI 23.9 4E+02 0.014 24.0 23.6 49 205-257 138-186 (280)
318 3bqo_A Telomeric repeat-bindin 22.5 3E+02 0.01 23.9 7.5 29 419-447 123-151 (211)
319 2r9g_A AAA ATPase, central reg 22.2 3.9E+02 0.013 23.3 9.4 63 213-276 15-85 (204)
320 1n11_A Ankyrin; clathrin, BAND 22.1 4.4E+02 0.015 25.6 10.5 80 117-204 20-103 (437)
321 3aji_A 26S proteasome non-ATPa 22.0 2.9E+02 0.0099 23.8 8.2 11 92-102 18-28 (231)
322 3l6a_A Eukaryotic translation 22.0 2.5E+02 0.0086 27.2 8.1 26 182-207 16-41 (364)
323 2zu6_B Programmed cell death p 22.0 2.6E+02 0.0087 26.4 7.9 64 181-244 169-237 (307)
324 2xig_A Ferric uptake regulatio 21.9 3.3E+02 0.011 22.2 8.0 45 214-258 31-75 (150)
325 4ets_A Ferric uptake regulatio 21.7 1.5E+02 0.005 24.9 5.6 67 126-193 15-84 (162)
326 4aez_C MAD3, mitotic spindle c 21.1 4.4E+02 0.015 23.4 9.0 53 125-177 131-184 (223)
327 2lo3_A SAGA-associated factor 20.7 23 0.00078 21.9 0.2 13 571-583 15-27 (44)
328 1mzb_A Ferric uptake regulatio 20.6 2.2E+02 0.0074 22.9 6.3 34 159-192 34-67 (136)
329 3txn_A 26S proteasome regulato 20.3 6.1E+02 0.021 24.8 28.7 279 182-478 23-345 (394)
330 3kea_A K1L; tropism, ANK repea 20.2 3.9E+02 0.013 24.3 9.0 89 388-481 133-222 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-37 Score=335.26 Aligned_cols=424 Identities=9% Similarity=-0.045 Sum_probs=373.2
Q ss_pred HhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhC--CCCChhHHHHHHHHH
Q 007134 43 RKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV--QDPNIFTWNTMIRGY 118 (616)
Q Consensus 43 ~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m--~~~~~~~~~~li~~~ 118 (616)
..+..+++.+. +..+.+.+++..+++.. | +...++.++.+|.+.| ++++|+.+|+.+ ..+++.+|+.++.+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G-NPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-CHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhC--C-CchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 44556666665 57889999999998654 3 5578889999999999 999999999998 468999999999999
Q ss_pred HhcCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHH---
Q 007134 119 AESANPLLAVELYSKMHVS---------------GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV--- 180 (616)
Q Consensus 119 ~~~g~~~~A~~l~~~m~~~---------------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--- 180 (616)
.+.|++++|+++|+++... |.+++..++..++.++.+.|++++|.++|+.+++.+. .+...
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHH
Confidence 9999999999999853221 2234577899999999999999999999999998752 23333
Q ss_pred -----------------------------------HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCC
Q 007134 181 -----------------------------------QNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNG 223 (616)
Q Consensus 181 -----------------------------------~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 223 (616)
++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 33336677889999999999999987 79999999999999999
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765 3477889999999999999999999999998764 6678999999999999999999999999
Q ss_pred hcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 304 EMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 304 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 875 3478899999999999999999999999998864 347789999999999999999999999999873 3456
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++++.+|+++..|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 889999999999999999999999888 45787 789999999999999999999999999999999999999
Q ss_pred hhhHHhHhcccchHHHHHHHHHhhC
Q 007134 452 LLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.++.+|.+.|++++|.+.++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=315.69 Aligned_cols=422 Identities=11% Similarity=-0.006 Sum_probs=358.6
Q ss_pred hHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 22 RVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
++..+|..+....+.+ ..+..+..+|. +..+.+.+++..++.. +.++.+++.++.+|.++| ++++|+++
T Consensus 102 ~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~ 172 (597)
T 2xpi_A 102 CAAFVGEKVLDITGNP-----NDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLY-DWQGALNL 172 (597)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHh-hHHHHHHH
Confidence 3666666665322211 23344555554 5788888888877543 468899999999999999 99999999
Q ss_pred HhhC-CCC------------------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHH----------
Q 007134 100 FSHV-QDP------------------NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFL---------- 149 (616)
Q Consensus 100 f~~m-~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~l---------- 149 (616)
|+++ +.. ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchh
Confidence 9954 443 48899999999999999999999999999854 4433 22222
Q ss_pred ----------------------------HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 007134 150 ----------------------------LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201 (616)
Q Consensus 150 ----------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 201 (616)
+..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44455678899999999998775 588999999999999999999999999
Q ss_pred hhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 202 ELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 202 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..++..++..|.+.|++++|.++++.+.+.. +.+
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 406 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQF 406 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCC
Confidence 99853 477899999999999999999999999998653 5678899999999999999999999999998864 557
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88999999999999999999999998753 478899999999999999999999999998754 34678999999999
Q ss_pred hcCCChHHHHHHHHHhHHhh---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCC
Q 007134 356 SHCGMVDEGFSYFKRMKDEY---GIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGH 428 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~ 428 (616)
.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++. ..| +..+|..+..+|...|+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 99999999999999997643 55777 7899999999999999999999998873 445 78999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
+++|...++++++++|+++..+..++++|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.3e-28 Score=255.95 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC---------ccHHHHHHHHHHHCCCCCCHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMS----ERDLVAWNSVINGFASNGK---------PNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~t 246 (616)
+++.+|++|+|.|++++|+++|++|. .||.++||+||.+|.+.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34445555555555555555555553 2455555555555554433 2345555555555555555555
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHH
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAV 322 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 322 (616)
|+++|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 555555555555555555555555555555555555555555555555555555555443 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555554444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-25 Score=231.30 Aligned_cols=366 Identities=11% Similarity=0.041 Sum_probs=243.4
Q ss_pred hCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 164 (616)
+.| ++++|.+.|+.+. ..+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...|++++|.+
T Consensus 11 ~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAG-DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344 5555555555432 1233444555555555555666655555555432 2334455555555555566666666
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (616)
.++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.... +
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 666555543 33344555566666666666666666655432 2 23345555555666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVV 318 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 318 (616)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++.. ..+..+|..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 234556666666666666666666666666553 3345666677777777777777777777553 235677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
.|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887743 223567788888888888899998888888763 3456788888889999999999
Q ss_pred HHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 399 QAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 399 ~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+|.+.++++. ..| +..++..+...+...|++++|...++++++++|+++..|..++.+|...|
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999998873 445 57788899999999999999999999999999988888888888877665
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.3e-28 Score=253.41 Aligned_cols=184 Identities=13% Similarity=0.133 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC---------cHHHHHHHHHHHHhCCCCcHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD---------VRMGEQTHSVAIRNGFESLVF 179 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 179 (616)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888899999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
+||+||++|++.|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999863 7999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.|+.++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.6e-25 Score=226.91 Aligned_cols=352 Identities=13% Similarity=0.096 Sum_probs=307.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+...+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677899999999999999875 45554 55566677788999999999999998875 677889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 193 HVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 193 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
++++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 5568999999999999999999999999875 344 4456677788889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-C
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-G 344 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 344 (616)
.+.+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999874 55678999999999999999999999998863 35678999999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 007134 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGA 422 (616)
Q Consensus 345 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a 422 (616)
..++..+...+...|++++|...|+.+.+. .+.+...|..+...+.+.|++++|.+.|+++. .+.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 678889999999999999999999999862 33347789999999999999999999998883 33478899999999
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999975
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.7e-22 Score=214.44 Aligned_cols=392 Identities=9% Similarity=-0.099 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~ 154 (616)
..+..+...|.+.| ++++|...|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 7 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44566677888888 9999999999875 3789999999999999999999999999998854 234467888899999
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh--------------------------------
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-------------------------------- 202 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-------------------------------- 202 (616)
..|++++|...++.+.+.+ +++......++..+.+......+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999876 3344444444444444332222222221
Q ss_pred ------hcCC---------C-ChhHHHHHHHHHHh---CCCccHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 007134 203 ------LMSE---------R-DLVAWNSVINGFAS---NGKPNEALTLFREMAS-----EGV--------EPDGYTMVSL 250 (616)
Q Consensus 203 ------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~l 250 (616)
.... + +...+......+.. .|++++|+..|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1100 1 13344444454554 8999999999999987 311 2234577788
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (616)
...+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+.+.. .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987633 88889999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998854 224578888899999999999999999999874 3345778899999999999999999999877
Q ss_pred C----CCCc----HHHHHHHHHHHHH---cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 408 L----MPPN----AVIWRTLLGACTI---HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 408 ~----~~pd----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
. ..|+ ..+|..+...+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 2222 4488999999999 999999999999999999999999999999999999999999999998764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.9e-21 Score=204.35 Aligned_cols=291 Identities=10% Similarity=0.002 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 188 (616)
..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444444444444444321 1223334444444444444444444444444433 22344444455555
Q ss_pred HhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHH------------HHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSER---DL---VAWNSVIN------------GFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
.+.|++++|.+.|+++.+. +. ..|..++. .+.+.|++++|+..|+++.... +.+..++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5555555555555544321 11 33333322 2444455555555555444331 2233344444
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH-----------
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTL----------- 316 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l----------- 316 (616)
..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.. | +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332 22334444444444444444444444444321 1 22222222
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCcCC-----HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 317 -VVGLAVNGFGKEALELFKEMEIGGFVPG-----EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 317 -i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
...+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 44455555555555555555442 232 223444444555555555555555554431 11234445555555
Q ss_pred HHhcCCHHHHHHHHHhC
Q 007134 391 LGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m 407 (616)
|.+.|++++|.+.++++
T Consensus 339 ~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.3e-21 Score=205.59 Aligned_cols=336 Identities=12% Similarity=0.017 Sum_probs=275.0
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 127 A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
+...+.+..... +.+..++..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444332 3345678888899999999999999999999874 56788999999999999999999999998764
Q ss_pred ---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCchHHHHHHH
Q 007134 207 ---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG----YTMVSL------------FSACAELGALALGRRAH 267 (616)
Q Consensus 207 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~ 267 (616)
.+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+ ...+...|++++|...+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45778999999999999999999999999875 3443 444444 44488899999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC
Q 007134 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344 (616)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (616)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9999875 56788999999999999999999999998863 57889999999999999999999999999874 454
Q ss_pred HH-HHHHH------------HHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 345 EV-TFVGV------------LYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 345 ~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
.. .+..+ ...+.+.|++++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 33333 78899999999999999999864 344 45789999999999999999999988
Q ss_pred C-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh------------HHhHhcc-----cchHHH
Q 007134 407 M-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS------------NLYAYEQ-----RWLNVQ 467 (616)
Q Consensus 407 m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-----~~~~a~ 467 (616)
+ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 7 3455 6899999999999999999999999999999999988888888 5566666 455666
Q ss_pred HHHHH
Q 007134 468 EVRRT 472 (616)
Q Consensus 468 ~~~~~ 472 (616)
+.+++
T Consensus 401 ~~y~~ 405 (450)
T 2y4t_A 401 KAYRK 405 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-21 Score=205.55 Aligned_cols=391 Identities=9% Similarity=-0.098 Sum_probs=308.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+...+..+++.. | ++..+..+..+|.+.| ++++|...|+.+. ..+...|..+..+|.+.|++++|+..
T Consensus 20 g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 68899999999999987 3 6889999999999999 9999999999754 34678999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHH-----------------------------------HHhCC-
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA-----------------------------------IRNGF- 174 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~-----------------------------------~~~g~- 174 (616)
|+++...+. ++......++..+........+.+.+..+ .....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998753 34444444444333222111111111100 00000
Q ss_pred --------CCcHHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhCCCcc
Q 007134 175 --------ESLVFVQNSLVHMYAA---FGHVKDACKVFELMSE----------------R-DLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 175 --------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~ 226 (616)
+.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1224445555555554 8999999999988654 1 3457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
+|+..|+++.... |+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998865 447888889999999999999999999998764 4567788999999999999999999999875
Q ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC---
Q 007134 307 ---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--- 380 (616)
Q Consensus 307 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--- 380 (616)
..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+...-.++
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 3367789999999999999999999999998753 234577888899999999999999999998764333333
Q ss_pred -hhhHHHHHHHHHh---cCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 381 -IEHFGCMVDLLGR---AGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 381 -~~~~~~li~~~~~---~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
...+..+...+.+ .|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++..+..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3489999999999 999999999998873 344 678899999999999999999999999999999876655443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-19 Score=195.60 Aligned_cols=387 Identities=9% Similarity=-0.048 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007134 76 PDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 76 ~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
...+..+...|.+.| ++++|...|+++. ..++..|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 455677778888888 8999999998754 3478889999999999999999999999998854 2345677888888
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh------------
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER----------DLV------------ 210 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~------------ 210 (616)
+...|++++|...++ .+.. .|+ ..+..+..+...+...+|...++.+... +..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 889999999999886 3322 222 2233355666667778888888887542 111
Q ss_pred ------------------HHHHHHHHHHh--------CCCccHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHh
Q 007134 211 ------------------AWNSVINGFAS--------NGKPNEALTLFREMASEGVEPD--------GYTMVSLFSACAE 256 (616)
Q Consensus 211 ------------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~ 256 (616)
.+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 12222222211 247899999999998753 33 2346666777888
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
.|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++. ..+..+|..+...+...|++++|++.|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 447888899999999999999999999875 346788999999999999999999999
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 007134 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----- 408 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 408 (616)
++..+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9998753 224577888999999999999999999999874 33457789999999999999999999998861
Q ss_pred ---CCCcHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 409 ---MPPNAVIWRTLLGACTIH----------GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 409 ---~~pd~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.......+..+...+... |++++|...++++++.+|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223455556677777 9999999999999999999999999999999999999999999999876
Q ss_pred C
Q 007134 476 E 476 (616)
Q Consensus 476 ~ 476 (616)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 4
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=9.4e-19 Score=188.14 Aligned_cols=384 Identities=10% Similarity=-0.016 Sum_probs=294.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
++.+.+...+..+++.. |.++..+..+...|.+.| ++++|.+.|++.. ..+...|..+...|.+.|++++|+..
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57788999999999887 678999999999999998 9999999999764 34788999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhC------CCCcH--------------------------
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG------FESLV-------------------------- 178 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~-------------------------- 178 (616)
|+.+ . ..|+... ..+..+...+....+...++.+++.. ..|+.
T Consensus 116 ~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 9743 3 2233221 11223333344456666666664320 11111
Q ss_pred ----HHHHHHHHHHHhc--------CCHHHHHHHHhhcCC--CC--------hhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 179 ----FVQNSLVHMYAAF--------GHVKDACKVFELMSE--RD--------LVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 179 ----~~~~~Li~~y~~~--------g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
.....+...|... |++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1333333333322 488999999998865 32 2357777788999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhH
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSW 313 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~ 313 (616)
.. .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 85 4667888889999999999999999999999875 5568889999999999999999999999875 3467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVD 389 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~ 389 (616)
..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.++ ...+..+..
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999998753 334567888899999999999999999998764321121 222445567
Q ss_pred HHHhc----------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 390 LLGRA----------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 390 ~~~~~----------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.+.+. |++++|...|++.. ..| +..+|..+...+...|++++|...+++++++.|+++..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 77788 99999999998873 445 67899999999999999999999999999999986543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.8e-18 Score=170.46 Aligned_cols=322 Identities=10% Similarity=-0.018 Sum_probs=219.5
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888887753 2345566677777777788888888887777764 445667777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh------hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 187 MYAAFGHVKDACKVFELMSERDL------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
.|.+.|++++|.+.|++..+.+. ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 77777777777777777654222 22322211000 00112223455666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 34556666777777777777777777776643 356677777777777888888888887777
Q ss_pred hCCCcCCH-HHHH------------HHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-h----hhHHHHHHHHHhcCCHHH
Q 007134 338 IGGFVPGE-VTFV------------GVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-I----EHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 338 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~~ 399 (616)
+. .|+. ..+. .+...+.+.|++++|...++.+.+.. |+ . ..+..+...+.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 63 2332 2221 23556778889999998888887642 33 2 235567788889999999
Q ss_pred HHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 400 AYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 400 A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++.....+..++..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999887773 345 678888899999999999999999999999999877766666665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.4e-17 Score=168.50 Aligned_cols=304 Identities=13% Similarity=0.022 Sum_probs=228.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
..+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345566666777777777777777777764 44566777777777777777777777776543 34566777777777
Q ss_pred hCCCccHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 221 SNGKPNEALTLFREMASEGVEP---DG-YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
+.|++++|+..|++..+. .| +. ..+..+... .. ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777777654 33 21 111111111 00 112233467889999999
Q ss_pred HHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 297 AAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 297 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
+|.+.|+++. ..+...|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...|+...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875 3477889999999999999999999999998853 34567888899999999999999999999986
Q ss_pred hhCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHhCC-CCCc-H----HHHHHHHHHHHHcCCcHHHHHH
Q 007134 374 EYGIMPKIEHFG------------CMVDLLGRAGLVKQAYEYIQNML-MPPN-A----VIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 374 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~pd-~----~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
.. +.+...+. .+...+.+.|++++|.+.+++.. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 42 22233333 23667899999999999998873 3343 3 3355677899999999999999
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998763
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.2e-18 Score=175.63 Aligned_cols=320 Identities=13% Similarity=0.067 Sum_probs=152.7
Q ss_pred hCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++| ++++|.+.+++++.|+ +|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666 8999999999997764 9999999999999999999999753 677899999999999999999999888
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
.+++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45678899999999999999999988864 67789999999999999999999999987 378
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHH
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 327 (616)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999887 378999999999999999999988777655 44444557889999999999
Q ss_pred HHHHHHHHHHhCCCcCCHHHHH--HHHHHHhcCCChHHHHHHHHHhHHhhCCCC------ChhhHHHHHHHHHhcCCHHH
Q 007134 328 EALELFKEMEIGGFVPGEVTFV--GVLYACSHCGMVDEGFSYFKRMKDEYGIMP------KIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 399 (616)
+|+.+++...... +-....|. .++-+-.+.+++.+..+.|..- -+++| +...|..++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 22233444 4444444556666666666532 25555 57789999999999999999
Q ss_pred HHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 400 AYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 400 A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
|....-+-+ ..-+...| .....+..+.+.-.++..--++..|
T Consensus 301 A~~tm~~h~~~a~~~~~f---~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQF---KDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHSTTTTCCHHHH---HHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCChhhhhhHHH---HHHHhchhHHHHHHHHHHHHHhcCH
Confidence 988765543 21122222 2333445555444444443344333
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.7e-16 Score=164.11 Aligned_cols=366 Identities=12% Similarity=0.008 Sum_probs=302.9
Q ss_pred CChHHHHHHHHHHHh----CCCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcc
Q 007134 74 NNPDLGKYLIYAIVS----LSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAE----SANPLLAVELYSKMHVSGIKPDTH 144 (616)
Q Consensus 74 ~~~~~~~~li~~y~~----~~~~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 144 (616)
.++.....|-.+|.. .+ +++.|...|++..+ .++..+..|...|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 356677777788887 66 89999999986543 578889999999998 899999999999998865 556
Q ss_pred hHHHHHHHHHc----CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHH
Q 007134 145 TYPFLLKAISK----LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA----FGHVKDACKVFELMSE-RDLVAWNSV 215 (616)
Q Consensus 145 t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~l 215 (616)
.+..+...+.. .+++++|...++.+.+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67777777777 789999999999999876 56778888899988 8899999999998654 577889999
Q ss_pred HHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 216 INGFAS----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 216 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
...|.+ .++.++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 999998 899999999999998865 55677777777775 789999999999988865 4566777888
Q ss_pred HHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 288 FYSK----CGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 288 ~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
+|.. .++.++|.+.|+...+. +..++..+...|... ++.++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8888 89999999999988654 677888888888887 89999999999998875 34566666666766
Q ss_pred CC---ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----c
Q 007134 358 CG---MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----H 426 (616)
Q Consensus 358 ~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~ 426 (616)
.| +.++|..+|+...+. .+...+..|..+|.. .+++++|.+.|++..-..+...+..|...+.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 789999999999874 567888899999998 89999999999887433467788889888888 8
Q ss_pred CCcHHHHHHHHHHHhcCCC---CCCchhhhhHHhHh
Q 007134 427 GHSAIAEIARSTLLQLEPK---HSGDYVLLSNLYAY 459 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 459 (616)
++.++|...++++.+.+|+ ++.....++.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 56666667766654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-17 Score=164.88 Aligned_cols=281 Identities=12% Similarity=0.002 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 334444444444444444444444321 122333444444444444555555444444431 1223344444444444
Q ss_pred cC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 257 LG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 257 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
.| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44 4455555554444432 22344455555555566666666665555432 2345555566666666666666666
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-------IMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
|++..+.. +.+...+..+...+...|++++|...|+.+.+... .+.....+..+...|.+.|++++|.+.++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666542 22345566666666677777777777766655321 12335677788888888888888888887
Q ss_pred hCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh-Hhcccc
Q 007134 406 NML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY-AYEQRW 463 (616)
Q Consensus 406 ~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 463 (616)
+.. ..| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 662 333 5677888888888888888888888888888888887777888777 344443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.7e-15 Score=162.62 Aligned_cols=394 Identities=8% Similarity=0.021 Sum_probs=282.3
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--P-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.+...|..++. +.+.| +++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 578888888888 46677 89999999987654 3 5678999999999999999999999999875 3666666555
Q ss_pred HHHH-HcCCCcHHHHH----HHHHHHHh-CCC-CcHHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh---
Q 007134 150 LKAI-SKLADVRMGEQ----THSVAIRN-GFE-SLVFVQNSLVHMYAA---------FGHVKDACKVFELMSE-RDL--- 209 (616)
Q Consensus 150 l~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~Li~~y~~---------~g~~~~A~~~f~~~~~-~~~--- 209 (616)
+... ...|+.+.|++ +++.+++. |.. ++..+|...+....+ .|+++.|.++|++..+ |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5432 34567766655 67766653 543 346678877776655 7889999999988765 221
Q ss_pred hHHHHHHHHH-------------HhCCCccHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHHhc--
Q 007134 210 VAWNSVINGF-------------ASNGKPNEALTLFREMA------SEG---VEPDG--------YTMVSLFSACAEL-- 257 (616)
Q Consensus 210 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~-- 257 (616)
..|....... .+.+++.+|..++.++. +.. ++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2333322210 12345677777776532 211 34442 2343333322221
Q ss_pred --Cch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-ChhhH
Q 007134 258 --GAL----ALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-------CGIII-------AAQRVFREMRK---R-NAVSW 313 (616)
Q Consensus 258 --~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~ 313 (616)
++. +.+..+++++++.. +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 122 36677888888763 5578888888888876 79987 89999998764 3 57789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDL 390 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 390 (616)
..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|..+|+...+. .|+ ...|...+..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 99999999999999999999999984 5543 47888888888899999999999999753 333 3333333322
Q ss_pred -HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC----chhhhhHHhHhcccc
Q 007134 391 -LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG----DYVLLSNLYAYEQRW 463 (616)
Q Consensus 391 -~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 463 (616)
+...|+.++|..+|++. ...| +...|..++......|+.++|..++++++...|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999876 2345 5789999999999999999999999999998776655 455556667788999
Q ss_pred hHHHHHHHHHhhC
Q 007134 464 LNVQEVRRTMVKE 476 (616)
Q Consensus 464 ~~a~~~~~~m~~~ 476 (616)
+.+.++.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.1e-16 Score=156.82 Aligned_cols=286 Identities=12% Similarity=-0.011 Sum_probs=170.4
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
++..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455555555555666666666666655532 1223344444455555555555555555555543 333444555555
Q ss_pred HHHhcC-CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 187 MYAAFG-HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 187 ~y~~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
.|...| ++++|.+.|++ ..... +.+...+..+...+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~~~~-------------------------------a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSK-------------------------------ATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHHHSCSCHHHHHHHHHH-------------------------------HHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHH-------------------------------HHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 555555 55555555554 43322 1123334444444444444444544
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-- 340 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 340 (616)
.+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...+...|++++|+..|++..+..
T Consensus 147 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 147 AYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 444444432 22334444566666667777777777766543 245667777777777888888888877776521
Q ss_pred ------CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-c
Q 007134 341 ------FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-N 412 (616)
Q Consensus 341 ------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d 412 (616)
...+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.. ..| +
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1233467778888888888888888888888763 23357778888888999999999999998873 556 5
Q ss_pred HHHHHHHHHHH-HHcCCc
Q 007134 413 AVIWRTLLGAC-TIHGHS 429 (616)
Q Consensus 413 ~~~~~~ll~a~-~~~g~~ 429 (616)
...+..+..++ ...|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 66777777766 444443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5e-15 Score=157.34 Aligned_cols=352 Identities=15% Similarity=0.056 Sum_probs=297.3
Q ss_pred CCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----CCCcHHHHHHHHHHHHhCCCC
Q 007134 105 DPNIFTWNTMIRGYAE----SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK----LADVRMGEQTHSVAIRNGFES 176 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 176 (616)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+..+.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3577888888888888 899999999999998864 55677777788877 899999999999999876
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 177 LVFVQNSLVHMYAA----FGHVKDACKVFELMSE-RDLVAWNSVINGFAS----NGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 177 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56777889999998 8999999999998765 467788888888988 789999999999998875 66777
Q ss_pred HHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHH
Q 007134 248 VSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRK-RNAVSWSTLVV 318 (616)
Q Consensus 248 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~ 318 (616)
..+...+.. .++.++|...+....+.| +...+..+..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888877 789999999999999876 56678888888886 8899999999998765 46777888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC-----CChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 319 GLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 319 ~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.|.. .++.++|++.|++..+.| +...+..+...+... ++.++|...|+...+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998765 445666666777766 8999999999999874 35667888888
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh---
Q 007134 390 LLGRAG---LVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--- 459 (616)
Q Consensus 390 ~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 459 (616)
.|.+.| +.++|.+.|++.....+...+..|...+.. .+++++|...++++.+.+ ++..+..|+.+|.+
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 789999999887433578889999999988 899999999999998764 47788899999998
Q ss_pred -cccchHHHHHHHHHhhCC
Q 007134 460 -EQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 460 -~g~~~~a~~~~~~m~~~~ 477 (616)
.+++++|.+.+++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 899999999999998765
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=4.8e-17 Score=165.72 Aligned_cols=281 Identities=14% Similarity=0.001 Sum_probs=213.2
Q ss_pred HHhcCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 007134 188 YAAFGHVKDACK-VFELMSE--R-----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259 (616)
Q Consensus 188 y~~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 259 (616)
|...|++++|.+ .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334477777777 7775432 1 34567778888888888888888888887763 4456677777788888888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH---------------HHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWST---------------LVVGLA 321 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~~ 321 (616)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888887765 456777888888888888888888888876532 2222221 233344
Q ss_pred HcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
..|++++|+..|+++.+.... ++..++..+...+...|++++|...|+.+.+. .+.+...|..+...+.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999875322 14788889999999999999999999999863 234578899999999999999999
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-----------CCchhhhhHHhHhcccchHHH
Q 007134 401 YEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-----------SGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 401 ~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~a~ 467 (616)
.+.++++. ..| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99998873 445 67899999999999999999999999999988876 677889999999999999999
Q ss_pred HHHHH
Q 007134 468 EVRRT 472 (616)
Q Consensus 468 ~~~~~ 472 (616)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98763
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.1e-19 Score=176.90 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=120.7
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
-+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999653 577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 348 (616)
...+. .+++.+.+.|+.+|.++|+++++.++|+ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4557889999999999999999998886 477789999999999999999999999977 368
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~ 428 (616)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 89999999999999999999987 36899999999999999999997777666655654 3468889999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--cccchHHHHHHH
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--EQRWLNVQEVRR 471 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~ 471 (616)
+++|..+++..+++++...+.|.-|+.+|++ -|+..|..+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999998888889989888875 567777777764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2e-16 Score=161.12 Aligned_cols=284 Identities=12% Similarity=-0.024 Sum_probs=158.2
Q ss_pred hcCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 007134 120 ESANPLLAVE-LYSKMHVSGI---KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195 (616)
Q Consensus 120 ~~g~~~~A~~-l~~~m~~~g~---~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 195 (616)
..|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665544211 1134556677777777788888888888877764 456677777888888888888
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHHHh
Q 007134 196 DACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY-TMVS---------------LFSACAE 256 (616)
Q Consensus 196 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~~~ 256 (616)
+|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888876542 456678888888888888888888888887653 2221 1111 1122224
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
.|++++|...+..+.+..... .+..+|..+...|...|++++|+..|+++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444432110 02344455555555555555555555555
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP---- 411 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---- 411 (616)
.... +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...|++.. ..|
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4421 112344555555555555555555555555442 12234555555666666666666666555441 111
Q ss_pred --------cHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 412 --------NAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 412 --------d~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
...+|..+..++...|+.++|..++++.
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1466777777777777777777666544
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.9e-15 Score=148.64 Aligned_cols=270 Identities=11% Similarity=-0.041 Sum_probs=212.3
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 007134 187 MYAAFGHVKDACKVFELMSERDL----VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (616)
-....|+++.|+..++.....+. .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34567888888888877655332 2445567888888888888876644 135667777888888888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 263 GRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 263 a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
|.+.++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888887764 44566777888999999999999999998 567889999999999999999999999999885
Q ss_pred cCCHHHH---HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 342 VPGEVTF---VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 342 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3664321 12334444569999999999999884 4567889999999999999999999999886 3556 67899
Q ss_pred HHHHHHHHHcCCcHH-HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHH
Q 007134 417 RTLLGACTIHGHSAI-AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
..++..+...|+.++ +.++++++++++|+++. +.+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999999976 67899999999999764 445566777777665443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.1e-16 Score=163.05 Aligned_cols=261 Identities=13% Similarity=-0.027 Sum_probs=203.7
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567778888888888888888888887653 3466777788888888888888888888887764 455777888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRKRN-------------AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLY 353 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 353 (616)
.|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888775321 223344578888999999999999999885322 15778888999
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|...|++.. ..| +..+|..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 33458899999999999999999999998873 455 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CCchhhhhHHhHhcccchHHHHHHHH
Q 007134 432 AEIARSTLLQLEPKH------------SGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 432 a~~~~~~~~~~~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
|...+++++++.|+. ...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999888773 45577899999999999988877654
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=6e-15 Score=155.73 Aligned_cols=243 Identities=10% Similarity=-0.032 Sum_probs=131.8
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
.++.++|++.|++..+.+ +.+..++..+...+.. .++.++|.+.++...+.. +.+..++..+...|.+.|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 445555555555554432 2223333333333322 234455555555554443 3344455555555555555555
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHH-------------------cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 298 AQRVFREMRK---RNAVSWSTLVVGLAV-------------------NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 298 A~~~f~~m~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
|...|++..+ .+..+|..+...|.. .+..++|...|++..+.. +.+..++..+...+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 5555555432 233344444333322 223567778887776643 22335566777888
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChh----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCc
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIE----HFGCMVD-LLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~ 429 (616)
...|++++|...|++..+. .|+.. .+..+.. .+.+.|+.++|+..|++. .+.|+...+... .
T Consensus 345 ~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------K 412 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------H
T ss_pred HHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------H
Confidence 8899999999999888752 23322 2233332 235678999999988776 466664433322 2
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-.
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44566778888999999999999999999999999999999998876543
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.6e-14 Score=152.28 Aligned_cols=385 Identities=10% Similarity=0.030 Sum_probs=283.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhHHHHHHHHH-HhcCCchHHHH-
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNIFTWNTMIRGY-AESANPLLAVE- 129 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~~~~~~li~~~-~~~g~~~~A~~- 129 (616)
+....++.++..+++.- |.++.+|..++.++.+.| ++++|+++|++... |++..|...+... ...|+.++|.+
T Consensus 26 ~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHH
Confidence 67899999999998764 678999999999999998 99999999998653 7888888888643 45688887765
Q ss_pred ---HHHHHHHC-CCCCCc-chHHHHHHHHHc---------CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-------
Q 007134 130 ---LYSKMHVS-GIKPDT-HTYPFLLKAISK---------LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY------- 188 (616)
Q Consensus 130 ---l~~~m~~~-g~~pd~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y------- 188 (616)
+|++.+.. |..|+. ..|...+..... .|+++.|..+|+.+++........+|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence 77776653 555543 455555555443 578999999999998832222223443332211
Q ss_pred ------HhcCCHHHHHHHHhhc------CC-------CC--------hhHHHHHHHHHHhC----CCc----cHHHHHHH
Q 007134 189 ------AAFGHVKDACKVFELM------SE-------RD--------LVAWNSVINGFASN----GKP----NEALTLFR 233 (616)
Q Consensus 189 ------~~~g~~~~A~~~f~~~------~~-------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~ 233 (616)
.+.++++.|..++... .+ |+ ...|...+.-.... ++. ++|+.+|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 1345677787766641 11 11 24566666443332 222 37888999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-------cCchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 234 EMASEGVEPDGYTMVSLFSACAE-------LGALA-------LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++..+.+.|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 988752 4456677777777665 68887 89999999886334567889999999999999999999
Q ss_pred HHHHhcCC--C-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH-HHhcCCChHHHHHHHHHhHHh
Q 007134 300 RVFREMRK--R-NA-VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY-ACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 300 ~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~ 374 (616)
.+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+... .+...+..... .+...|+.++|..+|+...+.
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99998753 3 33 4799999999999999999999999987531 12233332222 233589999999999999875
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
. +.+...|..+++.+.+.|+.++|..+|++.. ..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 421 ~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 Y--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp H--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred C--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3 3358899999999999999999999998872 3343 458999999999999999999999999988885
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=5.7e-16 Score=157.75 Aligned_cols=226 Identities=13% Similarity=-0.004 Sum_probs=129.1
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
..+..+...+...|++++|.++++.+++.. +.+..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345555666666666666666666666653 44566677777777777777777777776542 34567777777777
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDG-----------YTMVSLFSACAELGALALGRRAHTYVWKVGLS-DNVNVNNALLDF 288 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~ 288 (616)
+.|++++|+..|+++.+.. |+. ..+..+...+...|++++|...+..+.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7777777777777776532 221 12223345556666666666666666655311 145555666666
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 289 YSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
|.+.|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666665543 2245556666666666666666666666655531 112445555555555556666666
Q ss_pred HHHHHhHH
Q 007134 366 SYFKRMKD 373 (616)
Q Consensus 366 ~~~~~m~~ 373 (616)
..|+.+.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=9.1e-14 Score=155.51 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=265.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007134 78 LGKYLIYAIVSLSFPMSYAHNIFSHVQD-P-----NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151 (616)
Q Consensus 78 ~~~~li~~y~~~~~~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 151 (616)
--...+..|...| .+.+|.+++++..- | +...-|.++....+. +..+..+...+... .....+..
T Consensus 987 eVs~~vKaf~~ag-lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345566777776 77777777776542 2 234555666666555 44555555544321 22344666
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHH
Q 007134 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
.|...|.+++|.++|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7778888888888888752 1222223332 27788999999988774 467899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 007134 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311 (616)
Q Consensus 232 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 311 (616)
|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++..
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 9663 467788999999999999999999999888764 34444556999999999998644442 456777
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
.|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 8888999999999999999999984 47899999999999999999999877 4468999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--cccchHHHHH
Q 007134 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--EQRWLNVQEV 469 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~ 469 (616)
...|++..|......+. .++..+..++..|...|.+++|+.+++..++++|.+.+.|.-|+.+|++ -++..|+.++
T Consensus 1261 ve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998877543 3455666889999999999999999999999999888888888888875 4677777777
Q ss_pred HH
Q 007134 470 RR 471 (616)
Q Consensus 470 ~~ 471 (616)
|.
T Consensus 1339 f~ 1340 (1630)
T 1xi4_A 1339 FW 1340 (1630)
T ss_pred HH
Confidence 65
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1e-15 Score=152.82 Aligned_cols=257 Identities=11% Similarity=-0.058 Sum_probs=172.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444432 2334444455555555
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRKR---NAVSWSTL--------------VV-GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.|++++|.+.|+++.+. +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555544321 12222222 22 2667788999999999988753 235677888888
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 899999999999999998763 23457788999999999999999999998863 344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 432 AEIARSTLLQLEPK------------HSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 432 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
|...++++++..|+ ++..+..++.+|.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 5777889999999999999999988644
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=5.2e-15 Score=145.48 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=201.4
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007134 216 INGFASNGKPNEALTLFREMASEGVEPDG--YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 293 (616)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876543 4443 3556678899999999999876543 24667888899999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 294 IIIAAQRVFREMR----KR-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 294 ~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
+.++|.+.|+++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566777888999999999999999987 356778888999999999999999999
Q ss_pred HHhHHhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 369 KRMKDEYGIMPKIEH---FGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
+.+.+. .|+... ..+++..+...|++++|..+|+++. .+.+..+|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 355321 1234455556699999999999883 33478899999999999999999999999999999
Q ss_pred CCCCCchhhhhHHhHhcccchH-HHHHHHHHhh
Q 007134 444 PKHSGDYVLLSNLYAYEQRWLN-VQEVRRTMVK 475 (616)
Q Consensus 444 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~ 475 (616)
|+++.++..++.++...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987 5688888865
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=175.19 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-------KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456788899999999999999999987753 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 348 FVGVLYACSHCGMV-DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 348 ~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
|+++|.++++.|.. ++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999988874 7888999999876 9999999999888777666544444333
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.2e-17 Score=174.58 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMS-------ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (616)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997763 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHH
Q 007134 247 MVSLFSACAELGAL-ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGL 320 (616)
Q Consensus 247 ~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~ 320 (616)
|+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999998877765555554444433321 123334455555
Q ss_pred HHcC
Q 007134 321 AVNG 324 (616)
Q Consensus 321 ~~~g 324 (616)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-13 Score=145.63 Aligned_cols=364 Identities=9% Similarity=-0.072 Sum_probs=238.8
Q ss_pred ChHHHHHHHHHHHhCCCCHHHHHHHHhhCC-----------C-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-----
Q 007134 75 NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ-----------D-PNIFTWNTMIRGYAESANPLLAVELYSKMHVS----- 137 (616)
Q Consensus 75 ~~~~~~~li~~y~~~~~~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 137 (616)
...++|.|...|...| ++++|++.|++.. . ...++|+.+...|...|++++|+..|++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3567899999999998 9999999987531 2 35678999999999999999999999887652
Q ss_pred C-CCCC-cchHHHHHHHHH--cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHhhcC---CC
Q 007134 138 G-IKPD-THTYPFLLKAIS--KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY---AAFGHVKDACKVFELMS---ER 207 (616)
Q Consensus 138 g-~~pd-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y---~~~g~~~~A~~~f~~~~---~~ 207 (616)
+ ..++ ..++.....++. ..+++++|.+.|+.+++.. +.++..+..+..++ ...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 1122 234444444443 3457899999999999875 44566666665553 45577778888887654 24
Q ss_pred ChhHHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHH
Q 007134 208 DLVAWNSVINGFAS----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283 (616)
Q Consensus 208 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (616)
+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666655554 467889999999987754 4566788889999999999999999999998875 45666777
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 284 ALLDFYSKC-------------------GIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 284 ~li~~y~~~-------------------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
.+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+...
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 776666432 23566777776654 34677899999999999999999999999987543
Q ss_pred cCCHH--HHHHHHH-HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 342 VPGEV--TFVGVLY-ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 342 ~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
.|... .+..+.. ...+.|+.++|+..|++..+ +.|+........ ..+.+++++. ...| +..+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHH
Confidence 33321 1222222 34578999999999998874 446543332222 2333444333 2344 67899
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
..|...+...|++++|++.++++++++|.+|.+..-++
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999998887765544
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=1.6e-12 Score=145.68 Aligned_cols=370 Identities=12% Similarity=0.078 Sum_probs=282.4
Q ss_pred hcCHHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 007134 53 ASSKHKLKQVHAFSIRHGV-PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 53 ~~~~~~~~~~h~~~~~~g~-~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
++.+..+.++.+.++..+- -.++..+.|.|+.+..+.. ........+....-+ ..-+...+...|.+++|..+|
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD--~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD--RTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC--hhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHH
Confidence 3677888888888884321 0146678888887777653 444444444443222 455788888999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 007134 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211 (616)
Q Consensus 132 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 211 (616)
++.. -.....+.++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+.|.+. .|...
T Consensus 1073 kKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1073 RKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 9852 11122233332 667899998888754 44788999999999999999999999775 67788
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.+.|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence 9999999999999999999999877654 33333445888999999888644432 2 3455666779999999
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.|++++|...|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 99999999999986 589999999999999999999999863 5688999999999999999998876643
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhcCC---
Q 007134 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP--- 444 (616)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~p--- 444 (616)
..+...+..++..|.+.|.+++|+.+++.. +..| ....|.-|...+.+. ++..++.+.|..-..+.|
T Consensus 1277 ------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1277 ------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred ------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 245667889999999999999999999765 4555 345676666666554 466777777776666555
Q ss_pred --CCCCchhhhhHHhHhcccchHHHHH
Q 007134 445 --KHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 445 --~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
.+...|.-++.+|.+.|+|+.|...
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456678899999999999999843
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.7e-14 Score=143.81 Aligned_cols=218 Identities=14% Similarity=0.027 Sum_probs=103.2
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccH
Q 007134 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNE 227 (616)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 227 (616)
..+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 33333444444444444443332 22334444444444445555555544444321 233445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHH-------------HH--HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 228 ALTLFREMASEGVEPDGY-TMVSL-------------FS--ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 228 A~~~~~~m~~~g~~p~~~-t~~~l-------------l~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|++.|+++.... |+.. .+..+ .. .+...|++++|...+..+.+.. +.+..++..+...|.+
T Consensus 108 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 108 ALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 555555554432 1111 11111 02 1445556666666666665543 2345555555556666
Q ss_pred cCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 292 CGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
.|++++|.+.|+++. ..+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666555543 1234455555555555555555555555554432 112344445555555555555555555
Q ss_pred HHhHH
Q 007134 369 KRMKD 373 (616)
Q Consensus 369 ~~m~~ 373 (616)
+.+.+
T Consensus 264 ~~a~~ 268 (327)
T 3cv0_A 264 VRAIY 268 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1e-13 Score=132.95 Aligned_cols=212 Identities=9% Similarity=-0.025 Sum_probs=138.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------C----hhhHHHHHHHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR------N----AVSWSTLVVGL 320 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~----~~~~~~li~~~ 320 (616)
...+...|++++|...+..+.+.. .+..++..+...|...|++++|.+.|++..+. + ..+|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333333444444444444433333 33344444444444444444444444443321 1 35566667777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
...|++++|++.|++.... .|+.. .+...|++++|...++.+.. ..+.+...+..+...+.+.|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHH
Confidence 7777777777777777663 34432 34455677788887777765 2222356677778888888888888
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 401 YEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 401 ~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.+++.. ..| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88887762 333 5778888888888888999999999888888888888888888889899999999888887765
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-13 Score=132.80 Aligned_cols=223 Identities=9% Similarity=-0.070 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCc----hhHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDN----VNVNNA 284 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 284 (616)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555555555555555555555544 4455555555555566666666666555554321 111 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
+...|.+.|++++|.+.|++....+.. ...+...|++++|+..++++.... +.+...+..+...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHH
Confidence 667777777777777777665432111 234556677788888888777642 22335666777777888888888
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...|+.+.+. .+.+...|..+...|.+.|++++|...+++.. ..| +..+|..+...+...|++++|...+++++++
T Consensus 159 ~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888763 23456778888888888888888888887762 334 5778888888889999999999999998888
Q ss_pred C
Q 007134 443 E 443 (616)
Q Consensus 443 ~ 443 (616)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 7
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=4.1e-13 Score=130.26 Aligned_cols=241 Identities=12% Similarity=-0.049 Sum_probs=181.2
Q ss_pred hCCCccHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 221 SNGKPNEALTLFREMASEGVE---PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 134566677777777888888888888777764 4467778888888888888888
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 298 AQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 298 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
|.+.|++..+ .+..+|..+...|...|++++|++.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887653 36778888999999999999999999999874 455555555555667779999999999887763
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|++++|...++++++.+|++.
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 249 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF- 249 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC-
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH-
Confidence 33444444 47777888888999999998763 3332 57889999999999999999999999999998753
Q ss_pred chhhhhHHhHhcccchHHHHHH
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
...+.++...|++++|.+.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 44577888899999988765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.7e-13 Score=128.44 Aligned_cols=194 Identities=14% Similarity=-0.013 Sum_probs=148.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGV 351 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 351 (616)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888888888888887654 35677888888888888899998888888874 34 34667777
Q ss_pred HHHHhcC-----------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHH
Q 007134 352 LYACSHC-----------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTL 419 (616)
Q Consensus 352 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~l 419 (616)
..++... |++++|...|+...+. -+.+...|..+...|...|++++|+..|++.. ...+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7788888 9999999999998763 22347788899999999999999999998762 22678899999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=7e-13 Score=128.54 Aligned_cols=240 Identities=11% Similarity=-0.002 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACA 255 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 255 (616)
.......|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..|++....+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777777777777776532 2344666677777777777777777777666321111 123555555666
Q ss_pred hcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+. +...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 233445555555555555555555555554431 333444444122223355555555
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhCC-
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL---VKQAYEYIQNML- 408 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~- 408 (616)
|++..+. .|+ +...+..+...+...|+ .++|...+++..
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5544442 222 23334444444444444 333444443331
Q ss_pred ---CCCc------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 409 ---MPPN------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 409 ---~~pd------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+.....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 2467778888899999999999999999999998776666555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=8.8e-13 Score=138.16 Aligned_cols=364 Identities=11% Similarity=0.006 Sum_probs=170.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCH---HHHHHHHhhCCCCChhHHHHHHHHHHhcC-----Cch
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSHVQDPNIFTWNTMIRGYAESA-----NPL 125 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 125 (616)
++.+.+.+++..+.+.|.. .....|-.+|...| +. ++|...|++..+.++..+..|...+...| +++
T Consensus 17 g~~~~A~~~~~~aa~~g~~----~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYS----EAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCC----TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 4566666666666665531 12223444444444 45 66666666555545555555555444444 455
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHH
Q 007134 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR---MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG----HVKDAC 198 (616)
Q Consensus 126 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~ 198 (616)
+|+..|++..+.|. ...+..+...+...+..+ .+.+.+......| +......|..+|...+ +.+.+.
T Consensus 92 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 66666666665442 224444444444433322 2333333333333 2334444555555555 333444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCC---CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC
Q 007134 199 KVFELMSERDLVAWNSVINGFASNG---KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275 (616)
Q Consensus 199 ~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 275 (616)
.++......+..++..|...|.+.| +.++|++.|++..+.|
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g------------------------------------ 209 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG------------------------------------ 209 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC------------------------------------
Confidence 4444444444445555555555555 5555555555555444
Q ss_pred CCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCcCCHHHH
Q 007134 276 SDNVNVNNALLDFYSKC----GIIIAAQRVFREMRKRNAVSWSTLVVG-L--AVNGFGKEALELFKEMEIGGFVPGEVTF 348 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 348 (616)
+++...+..|..+|... ++.++|.+.|+.....+...+..+... | ...+++++|++.|++..+.| +...+
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 22222223344444333 455566666655552244455555544 2 34566666666666666554 33444
Q ss_pred HHHHHHHhcCC-----ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 349 VGVLYACSHCG-----MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 349 ~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
..+...|. .| ++++|...|+... +-+...+..|..+|.. ..++++|...|++..-.-+......|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 44444444 33 6667766666554 2345555556655554 33677777777665322233344444
Q ss_pred HHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh--HhcccchHHHHHHHHHhh
Q 007134 420 LGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY--AYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 420 l~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~~ 475 (616)
...|.. ..+.++|...++++.+.++. .....+..+. ...+..++|.++.+..++
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444432 34677777777777665543 2222333332 233456666666665543
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=2e-12 Score=121.02 Aligned_cols=195 Identities=12% Similarity=-0.006 Sum_probs=127.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 185 (616)
++...|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355677777777777888888888888777643 2234556667777777788888888887777764 45566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007134 186 HMYAAF-----------GHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251 (616)
Q Consensus 186 ~~y~~~-----------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 251 (616)
.+|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777777 777777777776543 345667777777777777777777777777665 5666677777
Q ss_pred HHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.++...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777654 445666666777777777777777766654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.6e-12 Score=130.73 Aligned_cols=242 Identities=10% Similarity=0.027 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFY 289 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 289 (616)
.|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+|
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34444445555555555555555554432 1233444444445555553 555555555555543 33455555555566
Q ss_pred HhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc-CCChHHH-
Q 007134 290 SKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH-CGMVDEG- 364 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a- 364 (616)
.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 66666666666666554 2355666666667777777777777777776642 1234566666666666 4444555
Q ss_pred ----HHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---------
Q 007134 365 ----FSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAG--LVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHG--------- 427 (616)
Q Consensus 365 ----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g--------- 427 (616)
+..|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 256 ~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 466666654 2243 667777777777777 5778888777775455 4567777887777763
Q ss_pred CcHHHHHHHHHH-HhcCCCCCCchhhhhHHhH
Q 007134 428 HSAIAEIARSTL-LQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 428 ~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~ 458 (616)
.+++|+.+++++ ++++|.....|..++..+.
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258899999998 8899887776766665544
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=2.7e-11 Score=117.63 Aligned_cols=224 Identities=10% Similarity=-0.111 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNA 284 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (616)
..++..+...|.+.|++++|++.|++..+.+ +...+..+...+.. .+++++|...+.+..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555555555555555555555555421 23344444445555 555555555555555543 3445555
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 285 LLDFYSK----CGIIIAAQRVFREMRK-RNAVSWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 285 li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
+..+|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 5666666666655432 244555556666666 666666666666666544 334444555555
Q ss_pred hc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--
Q 007134 356 SH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI-- 425 (616)
Q Consensus 356 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~-- 425 (616)
.. .+++++|...|+...+. .+...+..+...|.+ .+++++|.+.|++..-..+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 55 66666776666666542 234555556666666 66666666666554211224455555666665
Q ss_pred --cCCcHHHHHHHHHHHhcCCC
Q 007134 426 --HGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 426 --~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+++++|...++++++++|+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=2.7e-12 Score=124.43 Aligned_cols=214 Identities=11% Similarity=-0.041 Sum_probs=146.4
Q ss_pred cCCchHHHHHHHHHHHCCCC---CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIK---PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 197 (616)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677888888887765321 123456667777777888888888888887764 45677788888888888888888
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 198 CKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 198 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888887653 35677888888888888888888888888764 3444444444555566678888888887766653
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-------AVSWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
+++...+ .++..+...++.++|.+.++.....+ ..+|..+...|...|++++|...|++....
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2333333 35666666777777777777765542 345666666666666666666666666653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.1e-11 Score=118.49 Aligned_cols=205 Identities=15% Similarity=0.013 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (616)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4556666667777777777777777666542 2234444444444455555555555554444432 1
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
.+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334455555555556666666666665554222332 34455555566666666666666
Q ss_pred HHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 368 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666542 1233556666777777777777777777665 2333 4566667777777777777888777777777777
Q ss_pred CCC
Q 007134 446 HSG 448 (616)
Q Consensus 446 ~~~ 448 (616)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=2.8e-12 Score=134.33 Aligned_cols=344 Identities=12% Similarity=0.007 Sum_probs=231.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCc---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV---RMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.++.+.+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999998876 334444455555666777 8999999988854 5556667777555
Q ss_pred hcC-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCCcc---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 190 AFG-----HVKDACKVFELMSER-DLVAWNSVINGFASNGKPN---EALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 190 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
..| +.++|.+.|++..++ +..++..|...|...+..+ ++++.+.+....|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 788999999887653 5567888888888876644 45555555555443 34555666777777766
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc----CCHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG---IIIAAQRVFREMRKR---NAVSWSTLVVGLAVN----GFGKEAL 330 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~----g~~~~A~ 330 (616)
+.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555555444443333334458888999999999 899999999887543 334446677777554 6899999
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHH-H--hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-----CHHHHHH
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYA-C--SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-----LVKQAYE 402 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 402 (616)
+.|++.. .| +...+..+... + ...++.++|..+|+...+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 43 33444445544 3 4689999999999998764 3 6777788888887 55 9999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHh
Q 007134 403 YIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMV 474 (616)
Q Consensus 403 ~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 474 (616)
.|++.. .-+...+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 5577888888877765 34899999999998764 457788899999975 458899999999988
Q ss_pred hCCC
Q 007134 475 KERV 478 (616)
Q Consensus 475 ~~~~ 478 (616)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7764
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2.4e-11 Score=117.93 Aligned_cols=223 Identities=10% Similarity=-0.062 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHH
Q 007134 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRKR-NAVSWSTLV 317 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li 317 (616)
+..++..+...+...+++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888889999999999999999984 356778889999999 99999999999987643 778899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 318 VGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 318 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 99999999999999874 2 5677888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--
Q 007134 390 LLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY-- 459 (616)
Q Consensus 390 ~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 459 (616)
.|.+ .+++++|.+.|++..-..+...+..+...+.. .+++++|...++++++.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8988 99999999999877423467788889999999 9999999999999998876 6678899999999
Q ss_pred --cccchHHHHHHHHHhhCC
Q 007134 460 --EQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 460 --~g~~~~a~~~~~~m~~~~ 477 (616)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988765
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1.9e-12 Score=122.94 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (616)
..+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555555666666666666666655432 2233344444444444444444444444443332
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1233444445555555555555555555554432 123344555555555666666666666
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
+.+.+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 655542 22335556666666666666666666665542 223 45667777777777777777777777777777776
Q ss_pred CCchhhhhHH
Q 007134 447 SGDYVLLSNL 456 (616)
Q Consensus 447 ~~~~~~l~~~ 456 (616)
+..+..+..+
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6555544443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1.5e-11 Score=119.15 Aligned_cols=227 Identities=9% Similarity=-0.051 Sum_probs=178.2
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHH
Q 007134 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL----VAWNSVI 216 (616)
Q Consensus 143 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 216 (616)
...+......+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|.+.|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667788899999999999999999875 45566888899999999999999999998754 222 2488999
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCH
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL-DFYSKCGII 295 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~ 295 (616)
..|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998864 3355788899999999999999999999988763 55677777777 5554 4599
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CcCCH------HHHHHHHHHHhcCCChH
Q 007134 296 IAAQRVFREMRK---RNAVSWSTLVVGLAVNGF---GKEALELFKEMEIGG-FVPGE------VTFVGVLYACSHCGMVD 362 (616)
Q Consensus 296 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 362 (616)
++|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. ..+..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998763 356778888888888888 888998888887531 12331 35556666677777777
Q ss_pred HHHHHHHHhHH
Q 007134 363 EGFSYFKRMKD 373 (616)
Q Consensus 363 ~a~~~~~~m~~ 373 (616)
+|...|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777764
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.2e-12 Score=122.52 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=154.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.....+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777888889999999999988754 367788889999999999999999999998753 235678888889
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++. ..| +..++..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 33467889999999999999999999998873 334 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999989999999999999999999999998764
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.9e-11 Score=114.34 Aligned_cols=166 Identities=14% Similarity=-0.011 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHH
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVN-GFGKEALELFKEMEIGGFVPG-EVTFVGVLYAC 355 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 355 (616)
++..+...|...|++++|.+.|+++. ..+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 33444444444444444444444332 12344455555555555 555566665555554222232 24445555555
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC--CcHHHHHHHHHHHHHcCCcHHH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP--PNAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--pd~~~~~~ll~a~~~~g~~~~a 432 (616)
...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++.. .. .+...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 5666666666666655542 12235555566666666666666666665541 11 2444555555555666666666
Q ss_pred HHHHHHHHhcCCCCCC
Q 007134 433 EIARSTLLQLEPKHSG 448 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~ 448 (616)
...++.+.+..|+++.
T Consensus 202 ~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 6666666666666543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.7e-12 Score=134.09 Aligned_cols=265 Identities=11% Similarity=-0.023 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hHHHHHHHHHHhCCCccHHHHHHHHHHHC----CC-CCCHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE--R-DL----VAWNSVINGFASNGKPNEALTLFREMASE----GV-EPDGYTM 247 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 247 (616)
.+..+...|...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.... +- .....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666677777777777766542 2 22 35666666666667777777666665432 10 1112334
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKV----G-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 322 (616)
..+...+...|++++|...+..+.+. + .+. ...++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS-------------------------------EGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH-------------------------------HHHHHHHHHHHHHH
Confidence 44444445555555555555444332 0 011 12244445555555
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 323 NGF-----------------GKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 323 ~g~-----------------~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
.|+ +++|++.+++..+. +..| ...++..+...+...|++++|...|++..+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555544321 1111 1234555566666677777777776666542211111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--
Q 007134 381 ----IEHFGCMVDLLGRAGLVKQAYEYIQNML-----MPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-- 446 (616)
Q Consensus 381 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-- 446 (616)
...+..+...|...|++++|.+.+++.. ... ...++..+...+...|++++|...+++++++.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256667777777777777777776541 111 14567777777888888888888888876654432
Q ss_pred ----CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 ----SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23566788888888888888888877754
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.1e-11 Score=116.08 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=170.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356677788888999999999999998765 3467789999999999999999999999998753 335678888889
Q ss_pred HHhcC-CChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCc
Q 007134 354 ACSHC-GMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 354 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~ 429 (616)
.+... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999986 234444 6788899999999999999999998873 344 578899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 430 AIAEIARSTLLQLEP-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++|...++++++..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888888889999999999999999988653
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=4.5e-11 Score=114.23 Aligned_cols=194 Identities=12% Similarity=-0.029 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
..++..+...|...|++++|.+.|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57888999999999999999999998753 467789999999999999999999999998764 34666777777788
Q ss_pred HhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 255 AELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
...|++++|..++..+.+.+. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887766322 23455666666777777777777777766532 24556666666666666666666
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..|+++.+.. +.+...+..+...+...|+.++|..+++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666665532 23344455555556666666666666666654
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.4e-12 Score=130.40 Aligned_cols=272 Identities=12% Similarity=-0.003 Sum_probs=138.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhCCCccHHHHHHHHHHHC----CCCCC-H
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-D----LVAWNSVINGFASNGKPNEALTLFREMASE----GVEPD-G 244 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 244 (616)
....+..+...+.+.|++++|...|++..+ + + ..+|..+...|...|++++|+..|++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566666666666666666665532 2 2 234556666666666666666666655321 11111 2
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc
Q 007134 245 YTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323 (616)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 323 (616)
.++..+...+...|++++|...+..+.+... .++.. ....++..+...|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHc
Confidence 2344444445555555555555554433210 00000 0022344444444555
Q ss_pred CC--------------------HHHHHHHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC
Q 007134 324 GF--------------------GKEALELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378 (616)
Q Consensus 324 g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 378 (616)
|+ +++|++.+++.... +..|. ..++..+...+...|++++|...++...+...-.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 55 55555555443321 11111 1344455555556666666666665554321111
Q ss_pred CC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 379 PK----IEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 379 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
++ ...+..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.+..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 2245556666666666666666665441 0011 3456666666677777777777777666554332
Q ss_pred ------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 ------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..++.+|...|++++|.+.+++..+
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455667777777777777777666543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=5e-12 Score=125.96 Aligned_cols=197 Identities=13% Similarity=-0.015 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHH
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGF--------------------GKEAL 330 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 330 (616)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3444555555555665555555554331 11 2255556666666666 66666
Q ss_pred HHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHH
Q 007134 331 ELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 331 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 401 (616)
+.+++.... +..|. ...+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655431 11111 235566666777778888888777776543211122 336777778888888888888
Q ss_pred HHHHhCC----CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHH
Q 007134 402 EYIQNML----MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 402 ~~~~~m~----~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 467 (616)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 8886651 1111 4577778888888899999999988887665442 225667888899999999999
Q ss_pred HHHHHHhhC
Q 007134 468 EVRRTMVKE 476 (616)
Q Consensus 468 ~~~~~m~~~ 476 (616)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 998887653
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=8.9e-12 Score=126.72 Aligned_cols=226 Identities=11% Similarity=0.051 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007134 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI-IIAAQRVFREMRK---RNAVSWSTLVVGL 320 (616)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (616)
..|..+..++...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|++... .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 466677778889999999999999999875 5678899999999999997 9999999998763 4778999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh-cCCHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR-AGLVKQ 399 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 399 (616)
...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 225678888999999999999999999999863 23358889999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-cHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc---------
Q 007134 400 A-----YEYIQNM-LMPP-NAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ--------- 461 (616)
Q Consensus 400 A-----~~~~~~m-~~~p-d~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g--------- 461 (616)
| ++.|++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4677665 3566 6789999999998888 699999999998 889998888999999999875
Q ss_pred cchHHHHHHHHH-hh
Q 007134 462 RWLNVQEVRRTM-VK 475 (616)
Q Consensus 462 ~~~~a~~~~~~m-~~ 475 (616)
.+++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999988 55
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.8e-11 Score=125.72 Aligned_cols=292 Identities=13% Similarity=0.022 Sum_probs=161.9
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHHcCCCcHHHHHHHHHHHHh----CCC-
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-----HTYPFLLKAISKLADVRMGEQTHSVAIRN----GFE- 175 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~- 175 (616)
.....|......+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+++. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344555666666777777777777777776642 332 34555556666666776666666665432 111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCC--------------------cc
Q 007134 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSE-----RD----LVAWNSVINGFASNGK--------------------PN 226 (616)
Q Consensus 176 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 226 (616)
....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1234556666666666777666666655432 11 2245555555555555 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
+|+..|.+....- .+.+. +....++..+...|...|++++|.+.|++.
T Consensus 165 ~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5554444432210 00010 011234444555555555555555555544
Q ss_pred CC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 306 RK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 306 ~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.+ ++ ..+|..+...|...|++++|+..+++.... +..+. ..++..+...+...|++++|...++..
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 31 11 225566666666777777777777665432 11111 345666667777777777777777776
Q ss_pred HHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 372 KDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 372 ~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
.+...-.++ ...+..+...|.+.|++++|.+.+++. +..+ ...++..+...+...|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 543211122 456677777888888888887777654 1122 2456777777777777664
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.8e-11 Score=126.39 Aligned_cols=276 Identities=14% Similarity=0.033 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHHcCCCcHHHHHHHHHHHHh----C-CCCcH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-----HTYPFLLKAISKLADVRMGEQTHSVAIRN----G-FESLV 178 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~ 178 (616)
..+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+++. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455666677777777777777777764 2332 24455555566666666666666655442 1 01122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 007134 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE----GV-EPDGYTMVSLFSA 253 (616)
Q Consensus 179 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~a 253 (616)
.++..+...|...|++++|.+.| ++.... +- .....++..+...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICC-------------------------------ERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-------------------------------HHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 34444444555555555555444 443321 00 1112344455555
Q ss_pred HHhcCc-----------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHH
Q 007134 254 CAELGA-----------------LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--NAVSWS 314 (616)
Q Consensus 254 ~~~~~~-----------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~ 314 (616)
+...|+ +++|...+.+..+. +.....+ ...+|.
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACG 227 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHH
Confidence 555555 44444444433221 1111100 112333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-cCC----HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGF-VPG----EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFG 385 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 385 (616)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...|+...+...-..+ ...+.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444444444444332100 001 124445555555566666666655555432111111 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-------MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+...|.+.|++++|.+.+++.. ..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 66677777777777777766541 111 2357777888889999999999999998877654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=5.4e-12 Score=132.97 Aligned_cols=208 Identities=10% Similarity=-0.064 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII-IAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 234667777777888888888 88888887764 235778888999999999999999999998
Q ss_pred HhCCCcCCHHHHHHHHHHHhcC---------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc--------CCHHH
Q 007134 337 EIGGFVPGEVTFVGVLYACSHC---------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA--------GLVKQ 399 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 399 (616)
.+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57778888888889888 9999999999998863 234478899999999988 99999
Q ss_pred HHHHHHhCC-CCC----cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 400 AYEYIQNML-MPP----NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 400 A~~~~~~m~-~~p----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998873 455 67899999999999999999999999999999999999999999999999999998765443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=3.3e-11 Score=109.30 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3455555566666666666666666655532 113345555555666666666666666665542 2223445555556
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHH
Q 007134 390 LLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 467 (616)
.+...+++++|.+.+++.. ..| +..++..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665542 233 45666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhC
Q 007134 468 EVRRTMVKE 476 (616)
Q Consensus 468 ~~~~~m~~~ 476 (616)
+.+++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777766553
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=4.6e-11 Score=118.89 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-cHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML-------MPP-NAV 414 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~~ 414 (616)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.. ..+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444444555555555555555544332111111 3445566666666677776666665541 111 134
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777788888888888888888888776654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=1.4e-08 Score=110.21 Aligned_cols=398 Identities=7% Similarity=-0.002 Sum_probs=256.8
Q ss_pred hHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCC---HHHHHHHHhhCC--C---CChhHH
Q 007134 42 VRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQ--D---PNIFTW 111 (616)
Q Consensus 42 ~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~---~~~A~~~f~~m~--~---~~~~~~ 111 (616)
...+..+++.+. +....++.++..+++.- |.....|...+.+-.+.+ + .+.++.+|++.. . |++..|
T Consensus 66 ~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~-~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 66 IFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKM-EELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 345566666654 36778888888888764 567778888888877777 7 888888888643 2 778888
Q ss_pred HHHHHHHHhcCCc--------hHHHHHHHHHHHC-CC-CCCc-chHHHHHHHHHc---------CCCcHHHHHHHHHHHH
Q 007134 112 NTMIRGYAESANP--------LLAVELYSKMHVS-GI-KPDT-HTYPFLLKAISK---------LADVRMGEQTHSVAIR 171 (616)
Q Consensus 112 ~~li~~~~~~g~~--------~~A~~l~~~m~~~-g~-~pd~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 171 (616)
..-+....+.++. +...++|+..+.. |. .|+. ..|...+..... .+.++.++.+|..++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555543 2234677766543 55 5544 345444443322 2345677788888775
Q ss_pred hCCCCcHHHHHHHHH---HH----------HhcCCHHHHHHHHhhc-------CC--------------C--C------h
Q 007134 172 NGFESLVFVQNSLVH---MY----------AAFGHVKDACKVFELM-------SE--------------R--D------L 209 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~---~y----------~~~g~~~~A~~~f~~~-------~~--------------~--~------~ 209 (616)
.....-..+|..... .+ -...+++.|...+.++ .. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 322222233321111 10 0012334445544331 00 0 0 1
Q ss_pred hHHHHHHHHHHhCCC-------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH-HHHHHHHHhCCCCchhH
Q 007134 210 VAWNSVINGFASNGK-------PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR-RAHTYVWKVGLSDNVNV 281 (616)
Q Consensus 210 ~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~ 281 (616)
..|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++..+.. ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 235555443322221 23345667777654 3445666767777777788888886 999998875 3566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 282 NNALLDFYSKCGIIIAAQRVFREMRK-------------RN------------AVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+-..+...-+.|+++.|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888999999999999987753 21 235777777777888999999999998
Q ss_pred HhC-CC-cCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC--
Q 007134 337 EIG-GF-VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-- 411 (616)
Q Consensus 337 ~~~-g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-- 411 (616)
.+. +. .+......+.+.-. ..++.+.|..+|+...+.+ +.+...|...++.....|+.+.|..+|++.- ..|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 875 21 12222222333322 2356899999999998854 3456677888888888999999999998863 223
Q ss_pred --cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 412 --NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 412 --d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346888888888999999999999999999999854
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=4.5e-10 Score=111.16 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACA-------ELGAL-------ALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
++|+.+|++..... +-+...|......+. ..|+. ++|..++++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666776666542 334445555555443 34665 7888888887773224456678888888888
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH-hcCCChHHHHH
Q 007134 292 CGIIIAAQRVFREMRK--R-NAV-SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC-SHCGMVDEGFS 366 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 366 (616)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999998888764 2 343 78888888889999999999999988754 22334444333332 23699999999
Q ss_pred HHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--cHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----MPP--NAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 367 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.. ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988743 3357889999999999999999999998772 355 35789999999999999999999999999
Q ss_pred hcCCCCCCc
Q 007134 441 QLEPKHSGD 449 (616)
Q Consensus 441 ~~~p~~~~~ 449 (616)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986543
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.4e-11 Score=109.18 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=138.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788888888888999999888887653 467788888999999999999999999887753 2244566667778
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988763 3345778889999999999999999999877 3455 678999999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 007134 433 EIARSTLLQLEPKHS 447 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~ 447 (616)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.5e-10 Score=118.44 Aligned_cols=228 Identities=7% Similarity=-0.001 Sum_probs=138.6
Q ss_pred HHHHhCCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--C----CCchhHHHHH
Q 007134 217 NGFASNGKPNEALTLFREMASE----GVEP-DGYTMVSLFSACAELGALALGRRAHTYVWKVG--L----SDNVNVNNAL 285 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~~l 285 (616)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.. . +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1011 12344455555555555555555555554321 1 0113455666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-cCCHHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GF-VPGEVTFVGV 351 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~l 351 (616)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|++.|++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 6777777777777777765542 11 236677777888888888888888777651 22 2234567777
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCc-HHHHHHHHHHHH
Q 007134 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGL---VKQAYEYIQNMLMPPN-AVIWRTLLGACT 424 (616)
Q Consensus 352 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd-~~~~~~ll~a~~ 424 (616)
...+.+.|++++|...++...+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ..++..+...+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 77888888888888888776553211112 2335567777777887 7888888888765443 346667777788
Q ss_pred HcCCcHHHHHHHHHHHhcCC
Q 007134 425 IHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p 444 (616)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 88888888888887765443
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.2e-11 Score=120.11 Aligned_cols=239 Identities=13% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE--------R---DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (616)
..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.....-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 44556666666666666666666655432 1 123455555555555555555555555443200
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHH
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWST 315 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~ 315 (616)
.......+....++..+...|...|++++|.+.|++..+ + ...++..
T Consensus 101 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 101 ----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000000111233344444445555555555554444321 0 1234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh------CCCCCh-
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIG------GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY------GIMPKI- 381 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~- 381 (616)
+...|...|++++|++.|+++... +..|+ ..++..+...+...|++++|...|+.+.+.. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555566666666666666655442 11222 2345555566666666666666666665421 011111
Q ss_pred hh------HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 382 EH------FGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 382 ~~------~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
.. +..+...+...+.+.+|...++... ..| +..+|..+..++...|++++|...+++++++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11 1111122222333333333333332 222 234555555555566666666666655555544
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=121.83 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK-----------RNAVSWSTLVVGLAVNGFGKEALELFKEMEIG------GF 341 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 341 (616)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++..+. +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666666666666666655431 13457888899999999999999999998764 22
Q ss_pred cC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC------
Q 007134 342 VP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-----GIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML------ 408 (616)
Q Consensus 342 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 408 (616)
.| ....+..+...+...|++++|..+|+.+.+.. +..|. ...+..+...|.+.|++++|.+.++++.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 23 23567788889999999999999999987631 11222 5578889999999999999999997762
Q ss_pred ----CCCc-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 409 ----MPPN-------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 409 ----~~pd-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+. ...+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 122333334455666777778888888877888788899999999999999999999988764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.3e-09 Score=107.91 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCC--HHHHHHHHHHHhcCCChHHHH
Q 007134 292 CGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPG--EVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~ 365 (616)
.|+.++|.++|+...+ .+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++....+.|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555432 245556666666666666666666666666542 2332 345555555566666666666
Q ss_pred HHHHHhHHh
Q 007134 366 SYFKRMKDE 374 (616)
Q Consensus 366 ~~~~~m~~~ 374 (616)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=1.7e-08 Score=109.52 Aligned_cols=410 Identities=10% Similarity=0.005 Sum_probs=275.6
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC---chHHHHHHHHHHH
Q 007134 63 HAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESAN---PLLAVELYSKMHV 136 (616)
Q Consensus 63 h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~ 136 (616)
+...++.. |.|...|..++...-+.+ .++.|+.+|+.+.. .....|..-+..-.+.|+ .+.+..+|++.+.
T Consensus 55 lE~~l~~n--p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ--PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC--cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 578999999999999988 89999999998753 466789999998888898 9999999999987
Q ss_pred CC-CCCCcchHHHHHHHHHcCCCc--------HHHHHHHHHHHH-hCC-CCc-HHHHHHHHHHHH---------hcCCHH
Q 007134 137 SG-IKPDTHTYPFLLKAISKLADV--------RMGEQTHSVAIR-NGF-ESL-VFVQNSLVHMYA---------AFGHVK 195 (616)
Q Consensus 137 ~g-~~pd~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~Li~~y~---------~~g~~~ 195 (616)
.. ..|+...|..-+....+.++. +...++|+.++. .|. .++ ..+|...+.... ..++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 64 136776776666555444443 345578887765 365 453 568887776543 345678
Q ss_pred HHHHHHhhcCC-C--Ch-hHHH---HHHHHHH----------hCCCccHHHHHHHHHHH--CCCC---------------
Q 007134 196 DACKVFELMSE-R--DL-VAWN---SVINGFA----------SNGKPNEALTLFREMAS--EGVE--------------- 241 (616)
Q Consensus 196 ~A~~~f~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~--------------- 241 (616)
.+.++|++... | +. ..|. .+...+. ...+++.|...+.++.. .++.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 89999998875 2 11 2332 2222110 01122334444444321 1111
Q ss_pred C-----CH---HHHHHHHHHHHhcC-------chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhc
Q 007134 242 P-----DG---YTMVSLFSACAELG-------ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ-RVFREM 305 (616)
Q Consensus 242 p-----~~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m 305 (616)
| +. ..|...+.---..+ ..+.+..+|++++.. ++.+..+|-..+..+...|+.++|. ++|++.
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 00 12222222211111 123355678887776 3557788888888888899999996 999886
Q ss_pred CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------cCC------------HHHHHHHHHHHhcCCCh
Q 007134 306 RK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF---------VPG------------EVTFVGVLYACSHCGMV 361 (616)
Q Consensus 306 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~ 361 (616)
.. .+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|.+
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 53 3556688888888899999999999999886310 142 23577777777788999
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-LVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
+.|..+|..+.+.. -......|...+.+-.+.| +.+.|.++|+..- ..-+...|...+.-....|+.+.|..+|++
T Consensus 451 ~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 451 AASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998731 1123444544444444554 4899999998762 223667788888888889999999999999
Q ss_pred HHhcCCC---CCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 439 LLQLEPK---HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 439 ~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
++...|+ ....+......-.+.|..+.+.++.+++.+.-
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988774 23345566666678899999999999998753
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=7.9e-10 Score=113.02 Aligned_cols=220 Identities=7% Similarity=-0.121 Sum_probs=149.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC--C---CC-CHHHHH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE-----R----DLVAWNSVINGFASNGKPNEALTLFREMASEG--V---EP-DGYTMV 248 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~t~~ 248 (616)
+...|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..+.+..+.- . .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566777777777777776543 2 23457777777777888887777777765421 1 11 124566
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHH
Q 007134 249 SLFSACAELGALALGRRAHTYVWKV----GLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----RN----AVSWS 314 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~ 314 (616)
.+...+...|++++|...+..+.+. +.. ....++..+..+|...|++++|.+.|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777888888888887776653 111 1124677788888888888888888877653 22 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHHHHHHHHHhcCCC---hHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTFVGVLYACSHCGM---VDEGFSYFKRMKDEYGIMPK-IEHFGC 386 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~ 386 (616)
.+...|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..+++... ..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence 7888888899999999988887652 111122335667777888888 777777777662 2233 556778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 007134 387 MVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m 407 (616)
+...|.+.|++++|.+.+++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999988764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1.2e-10 Score=127.99 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLY 353 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 353 (616)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345555555555555555555555555431 23445555555555555555555555555542 232 344445555
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
++...|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 555555555555555554431 122 444444555555555555555554443 2333 2344444444555555555
Q ss_pred HHHHHHHHHHhcC
Q 007134 431 IAEIARSTLLQLE 443 (616)
Q Consensus 431 ~a~~~~~~~~~~~ 443 (616)
+|.+.+++++++.
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 5555555444433
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=3.8e-10 Score=101.62 Aligned_cols=160 Identities=12% Similarity=-0.040 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
.+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555432 33444555555555555555555555554421 1123334444444444
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 437 (616)
.|++++|...|+.+.+. . +.+...+..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 44444444444444331 1 1234455555555555555555555555
Q ss_pred HHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 438 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=8.6e-09 Score=104.73 Aligned_cols=193 Identities=15% Similarity=0.012 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----cCCHHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF----VPGEVT 347 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t 347 (616)
+.+...|...|++++|...|++... + ....+..+...+...|++++|...+++...... .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3344445555555555555544321 0 112334445555566666666666665543211 011234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCC-----cHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-----CMVDLLGRAGLVKQAYEYIQNML-MPP-----NAVIW 416 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p-----d~~~~ 416 (616)
+..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..| ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44555556666666666666666543211111111111 12233556677777766666652 111 12244
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666666777777777776665433221 12344566667777777777777666543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=1.5e-09 Score=97.64 Aligned_cols=169 Identities=15% Similarity=0.007 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGL 320 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~ 320 (616)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887653 4567888999999999999999999999875 34677899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
...|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+. . |
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~-~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R-P--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-T---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C-c---------------------
Confidence 99999999999999998753 234566666667777777777777777776542 1 1
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+..++..+...+...|++++|...++++++..|+++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 13445556666666667777777777777666666443
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=8.8e-10 Score=116.02 Aligned_cols=192 Identities=12% Similarity=-0.036 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHV-KDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~-~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 253 (616)
...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|++.|++..+. .|+...+..+..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHH
Confidence 34444444444444444 444444444321 22344455555555555555555555555443 2444444455555
Q ss_pred HHhc---------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHhcCC------CCh
Q 007134 254 CAEL---------GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC--------GIIIAAQRVFREMRK------RNA 310 (616)
Q Consensus 254 ~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~A~~~f~~m~~------~~~ 310 (616)
+... |++++|...+.++++.. +.+...+..+..+|... |++++|.+.|++..+ .+.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 5555 55555555555555543 33455555566666655 666666666665542 355
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 667777777777777777777777776632 12334566666777777777777777776654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1.2e-09 Score=111.57 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=99.3
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--CC----CchhHHHHH
Q 007134 217 NGFASNGKPNEALTLFREMASEGV-EPD----GYTMVSLFSACAELGALALGRRAHTYVWKVG--LS----DNVNVNNAL 285 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~----~~~~~~~~l 285 (616)
..+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+....+.. .. ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666543210 011 2344455555556666666666555554321 00 012344455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTFVGVL 352 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 352 (616)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|++.|++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 5555555555555555544321 11 223444555555555555555555554430 1111133444444
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCcH-HHHHHHHHHHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGL---VKQAYEYIQNMLMPPNA-VIWRTLLGACTI 425 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~ 425 (616)
..+.+.|++++|...++...+...-.++ ...+..+...+...|+ +.+|+..+++....|+. ..+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 5555555555555555554432111111 2223333334444444 44444444443322221 233334444444
Q ss_pred cCCcHHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTL 439 (616)
Q Consensus 426 ~g~~~~a~~~~~~~ 439 (616)
.|++++|...++++
T Consensus 349 ~g~~~~A~~~~~~a 362 (378)
T 3q15_A 349 SCHFEQAAAFYRKV 362 (378)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44444444444444
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1.2e-08 Score=103.95 Aligned_cols=222 Identities=8% Similarity=-0.083 Sum_probs=117.8
Q ss_pred HHHHhcCchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----ChhhHHHH
Q 007134 252 SACAELGALALGRRAHTYVWKVG--LS---DNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----R-----NAVSWSTL 316 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~l 316 (616)
..+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ . ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34456666666666666665431 11 1234555666666666666666666655431 1 12345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh---CCCCChhhHHHHH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMV 388 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li 388 (616)
...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...|++..+.. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 66666666666666666665432 1111 12345556666666666666666666655411 1112245566666
Q ss_pred HHHHhcCCHHHHHHHHHhCC------CCCc-HHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 389 DLLGRAGLVKQAYEYIQNML------MPPN-AVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~------~~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
..|.+.|++++|.+.+++.- -.|. ...+..+...+...++ +++|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 66666666666666665541 1121 2334444444455555 55555555542 111222334455666666
Q ss_pred hcccchHHHHHHHHHh
Q 007134 459 YEQRWLNVQEVRRTMV 474 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~ 474 (616)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666554
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=9.7e-10 Score=103.32 Aligned_cols=187 Identities=12% Similarity=-0.055 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVL 352 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 352 (616)
++..+..+...|.+.|++++|.+.|+...+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666667777777777777777776542 45556666777777777777777777777663 333 34566666
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc---HHHHHHHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKI-------EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN---AVIWRTLLG 421 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~ 421 (616)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 67777777777777777776531 1223 34666666667777777777777665 34555 345555555
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.. .+...++++..+.+.++..|. .......+.+++|...+++..+
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 5543 334445555555554433332 2223445666888888888765
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.1e-08 Score=101.82 Aligned_cols=259 Identities=11% Similarity=-0.023 Sum_probs=133.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHcCCCcHHHHHHHHHHHHhCC-CCc----HHHHHHH
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTH----TYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESL----VFVQNSL 184 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~L 184 (616)
+...+...|++++|...+++.+......+.. ++..+...+...|+++.|.+.+...++... ..+ ..+.+.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777766543111111 233344455566777777766666654210 011 2234556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSE-------R----DLVAWNSVINGFASNGKPNEALTLFREMASEGVE--P--DGYTMVS 249 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 249 (616)
...|...|++++|.+.+++..+ + ...++..+...|...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6667777777777776665431 1 1223455566666777777777777666543211 1 1234555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCc--hhHH-H---HHHHHHHhcCCHHHHHHHHHhcCCCCh-------hhHHHH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDN--VNVN-N---ALLDFYSKCGIIIAAQRVFREMRKRNA-------VSWSTL 316 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~-~---~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~l 316 (616)
+...+...|++++|...++......-.++ .... . ..+..+...|++++|...+++....+. ..+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55566666777777776666654311111 1111 1 223345566777777777666654321 134455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG----GFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55666666666666666655431 111111 133333344445555555555555443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=2.7e-09 Score=100.19 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=157.7
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVV 318 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 318 (616)
.|...+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987446777777799999999999999999998764 35678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCcCC-H-------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHH
Q 007134 319 GLAVNGFGKEALELFKEMEIGGFVPG-E-------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCM 387 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 387 (616)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999874 344 3 3477777888899999999999999974 4455 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 388 VDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...|...|+. .++++. ...+...+..+. ....+.+++|...++++++++|+++.....+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 233321 122344444433 3455678999999999999999987666555544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.8e-09 Score=104.54 Aligned_cols=163 Identities=8% Similarity=-0.047 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcC-CChHHHHHHHHHhHHhhCCCCC----
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHC-GMVDEGFSYFKRMKDEYGIMPK---- 380 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~---- 380 (616)
.+|+.+...|...|++++|+..|++..+. |-.+ -..++..+...+... |++++|...|++..+.+.-..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 35566666666666666666666665442 1111 124566777777775 8888888888887653211111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc---H-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch-
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN---A-----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY- 450 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd---~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~- 450 (616)
..++..+...|.+.|++++|+..|++.. ..|+ . ..|..+..++...|++++|...+++.++++|+.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3467788888999999999999987762 2222 1 2567777888899999999999999999998865432
Q ss_pred ----hhhhHHhH--hcccchHHHHHHHHH
Q 007134 451 ----VLLSNLYA--YEQRWLNVQEVRRTM 473 (616)
Q Consensus 451 ----~~l~~~y~--~~g~~~~a~~~~~~m 473 (616)
..++..|. ..+++++|.+.++.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 23455553 456788888777654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=4.4e-09 Score=115.49 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGL 320 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (616)
..+++.+..++.+.|++++|.+.|+++++.. +.+...++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3466666667777777777777777766653 34456666677777777777777777766542 3456677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 398 (616)
.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|+..|++..+. .|+ ...|..+...|...|+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777776653 333 456666666777777777777777766542 243 566666777777777777
Q ss_pred HHHHHHHh
Q 007134 399 QAYEYIQN 406 (616)
Q Consensus 399 ~A~~~~~~ 406 (616)
+|.+.+++
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=4.4e-09 Score=101.72 Aligned_cols=221 Identities=15% Similarity=0.098 Sum_probs=154.6
Q ss_pred HhcCchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHH
Q 007134 255 AELGALALGRRAHTYVWKV-------GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWSTL 316 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~l 316 (616)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2233567788899999999999999999987652 1 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----CCCC-Chhh
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG------GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-----GIMP-KIEH 383 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~ 383 (616)
...|...|++++|++.|++.... ...| ...++..+...+...|++++|..+|+++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1123 34677788889999999999999999987631 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCc-HHHHHHHHHHHHHcCCcHHHH------HHHHHHHhcCCCC
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML----------MPPN-AVIWRTLLGACTIHGHSAIAE------IARSTLLQLEPKH 446 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~pd-~~~~~~ll~a~~~~g~~~~a~------~~~~~~~~~~p~~ 446 (616)
+..+...|.+.|++++|.+.+++.. ..+. ...|..+.......+....+. ..++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999997651 2232 234444444444333332222 2222222223444
Q ss_pred CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677899999999999999999998765
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=1.7e-08 Score=98.94 Aligned_cols=242 Identities=13% Similarity=-0.039 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc--C-CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAF--G-HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
+|.++..+..+.- ++....+ . |.+. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776652 3221122 1 2233 2 488888777664 6678888888888888887754
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 007134 238 E----GVEPD-GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312 (616)
Q Consensus 238 ~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (616)
. |-+++ ..+|..+..++...|++++|...+...++. +.+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 2 21111 345566666666666666666666555432 1112222211 234
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhCCC----cCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh-----
Q 007134 313 WSTLVVGLAVN-GFGKEALELFKEMEIGGF----VPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI----- 381 (616)
Q Consensus 313 ~~~li~~~~~~-g~~~~A~~l~~~m~~~g~----~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----- 381 (616)
|+.+...|... |++++|+..|++..+... .+. ..++..+...+...|++++|...|+...+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 56667777775 777777777777655210 001 2456777778888888888888888877632111221
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH------HHHHHHHHHHH--HcCCcHHHHHHHHHHHhcCCC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA------VIWRTLLGACT--IHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~------~~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..|..+..++...|++++|...+++. .+.|+. ..+..++.++. ..+++++|+..++++..++|.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14667777788888888888888776 344432 13444555554 345677888888777777765
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=4.3e-08 Score=94.12 Aligned_cols=204 Identities=10% Similarity=-0.032 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-cCC-HHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---N---AVSWSTLVVGLAVNGFGKEALELFKEMEIGGF-VPG-EVTFV 349 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 349 (616)
+...+-.+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666666777777777777766532 2 34566666667777777777777777665321 111 23344
Q ss_pred HHHHHHhc--------CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 007134 350 GVLYACSH--------CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420 (616)
Q Consensus 350 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll 420 (616)
.+..++.. .|++++|...|+.+.+.+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666777777766666532 22 12221111110000000 11246677
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhc----------ccchHHHHHHHHHhhCCCccCCceeeE
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYE----------QRWLNVQEVRRTMVKERVKKTPGHSLV 487 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 487 (616)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 889999999999999999999999854 3677889999876 89999999999886532
Q ss_pred EeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 007134 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522 (616)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 522 (616)
..+|...++...+.++...+.+
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777666654
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=2.5e-08 Score=96.34 Aligned_cols=197 Identities=10% Similarity=-0.008 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKV------GL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R--- 308 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~--- 308 (616)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444555555555555444432 11 12234455555556666666666655554431 1
Q ss_pred -ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----
Q 007134 309 -NAVSWSTLVVGLAVNGFGKEALELFKEMEIG------GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY----- 375 (616)
Q Consensus 309 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 375 (616)
...+|..+...|...|++++|++.|++..+. +..|+ ..++..+...+...|++++|..+|+.+.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2345666666677777777777777766543 11222 3456667777777788888888777776521
Q ss_pred -CCCCC-hhhHHHHHHHHHhc------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 376 -GIMPK-IEHFGCMVDLLGRA------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 376 -~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...+. ...|..+...+... ..+.++...++..+ ..| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 23333333333332 23445555555554 234 3467888999999999999999999998764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.3e-07 Score=91.33 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=159.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 188 YAAFGHVKDACKVFELMSERDL-VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
..-.|.+..+..-...+...+. ..---+.++|...|++.... .-.|....+..+ ..|...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l-a~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY-VQFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH-HHHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH-HHHhccc----HHHH
Confidence 4456888887776665543222 22233457788888776421 123333333222 2233322 5566
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++..++.+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344555567888889999999999999887432 455677788899999999999999999987 4
Q ss_pred cC-----CHHHHHHHHHHHh--c--CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C--
Q 007134 342 VP-----GEVTFVGVLYACS--H--CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M-- 409 (616)
Q Consensus 342 ~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-- 409 (616)
.| +..+...+..++. . .++..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+. .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 3566666666632 2 34899999999998754 3553344445558889999999999987652 1
Q ss_pred --------CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 410 --------PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 410 --------~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.| |+.+...++......|+ .|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 25 56777677766677786 88999999999999866
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=6.1e-08 Score=81.67 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45555666666666666666666665532 123444555555556666666666666665542 122344455555555
Q ss_pred HhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 392 GRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+.|++++|.+.++++. ..| +..++..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 55555555555555441 122 3445555555555555555555555555555543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=6.9e-08 Score=92.64 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----Chhh
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRK--R----NAVS 312 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~~ 312 (616)
.+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888899999999999999998864 223 67788899999999999999999998864 2 1346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhH
Q 007134 313 WSTLVVGLAV--------NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384 (616)
Q Consensus 313 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 384 (616)
+..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999874 3443111 1111111111110 01235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCCc
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIH----------GHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..+...|.+.|++++|+..|++.. ..|+ ...+..+..++... |++++|...++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567788889999999999988762 2232 45677777778766 88899999999999999987533
Q ss_pred ---hhhhhHHhHhcccchH
Q 007134 450 ---YVLLSNLYAYEQRWLN 465 (616)
Q Consensus 450 ---~~~l~~~y~~~g~~~~ 465 (616)
...+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3344555545444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=3.5e-08 Score=83.18 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|..+|+.+.+. .+.+...+..+...+...|++++|...++++. ..| +...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566777888999999999999999863 23457788889999999999999999998873 333 6778899999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999998888899999999999999999999988754
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=3.8e-09 Score=92.18 Aligned_cols=139 Identities=9% Similarity=-0.078 Sum_probs=95.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|...|++..+. -+-+...|..+...|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 34455666666666665442 232 233445556666777777777777766642 1223667777777788888888
Q ss_pred HHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHH-HHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 399 QAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIA-RSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 399 ~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
+|+..|++. ...| +..+|..+...+...|+.++|... ++++++++|+++..|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888887765 3556 567888888889999988776654 588999999988888888888877764
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.8e-07 Score=90.41 Aligned_cols=238 Identities=12% Similarity=-0.002 Sum_probs=164.3
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
+-..-.|++..++.-..++.. ..+.....-+.+++..+|+.+.+ ..-.|.......+.. |.+.+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344456888888774333221 22223444556788878876642 112233333333333 33332
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 297 AAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 297 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7778887653 455666778889999999999999999987765322 44667788889999999999999999997
Q ss_pred HhhCCCC-----ChhhHHHHHHH--HHh--cCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 373 DEYGIMP-----KIEHFGCMVDL--LGR--AGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 373 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
+. .| +..+...|..+ ... .++..+|..+|+++. ..|+..+-..|++++.+.|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 45 24555555555 333 349999999999984 3456344445555889999999999999988776
Q ss_pred ----------CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 443 ----------EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 443 ----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+|+++.+...++.++...|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888777777777786 899999999763
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1e-08 Score=112.96 Aligned_cols=168 Identities=11% Similarity=-0.060 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhc
Q 007134 290 SKCGIIIAAQRVFREMR-----------KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSH 357 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 357 (616)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56777888888887765 235567777777888888888888888887763 33 44566677777778
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
.|++++|...|++..+. -+.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887652 22246677778888888888888 7777765 2445 567778888888888888888888
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888877777777777766444
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=1.5e-07 Score=88.05 Aligned_cols=180 Identities=14% Similarity=0.008 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH----HHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK--RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE----VTF 348 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 348 (616)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 33445566677788888888888887753 22 2356677778888888888888888887642 332 123
Q ss_pred HHHHHHHhc------------------CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 007134 349 VGVLYACSH------------------CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409 (616)
Q Consensus 349 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (616)
..+..++.. .|+.++|...|+.+.+.+ |+ ...+.+.... +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----HHHHHHH--------
Confidence 333333332 355666666666665422 32 2222111110 0000000
Q ss_pred CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999999865 4578899999999999999999998887654
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1e-07 Score=92.95 Aligned_cols=174 Identities=10% Similarity=-0.058 Sum_probs=126.9
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555555445556667777778888888888888887764 34 3456677777888888888888888877643
Q ss_pred hCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCc
Q 007134 375 YGIMPKIEHFGCM-VDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--SGD 449 (616)
Q Consensus 375 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 449 (616)
.|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3553332222 23356677777787777665 2445 67888899999999999999999999999999987 667
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHh
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999988877643
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=3.7e-07 Score=84.51 Aligned_cols=171 Identities=8% Similarity=-0.107 Sum_probs=122.2
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC----ChHHHHHHHHHhH
Q 007134 298 AQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG----MVDEGFSYFKRMK 372 (616)
Q Consensus 298 A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 372 (616)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2355666666677777777777777777777654 44555556666666 5 7888888888776
Q ss_pred HhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCc---HHHHHHHHHHHHH----cCCcHHHHHHHHHHH
Q 007134 373 DEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNML-MPPN---AVIWRTLLGACTI----HGHSAIAEIARSTLL 440 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~pd---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 440 (616)
+. -+...+..|...|.. .+++++|++.|++.. ..|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 346667777777776 778888888887774 3332 6778888888877 778999999999998
Q ss_pred hcCCCCCCchhhhhHHhHhc-c-----cchHHHHHHHHHhhCC
Q 007134 441 QLEPKHSGDYVLLSNLYAYE-Q-----RWLNVQEVRRTMVKER 477 (616)
Q Consensus 441 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 477 (616)
+. |.++.++..|+.+|... | ++++|.+.+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 87 55577888899888754 3 8899999998887765
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=4e-07 Score=98.12 Aligned_cols=160 Identities=11% Similarity=-0.071 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3667778887777653 256678888888888899999999998888743 224567778888888999999999999
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcC
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH---GHSAIAEIARSTLLQLE 443 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~ 443 (616)
++..+. -+.+...+..+...|.+.|++++|.+.+++.- ..| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 988763 23347788889999999999999999998762 445 577888999999999 99999999999999999
Q ss_pred CCCCCchhhhh
Q 007134 444 PKHSGDYVLLS 454 (616)
Q Consensus 444 p~~~~~~~~l~ 454 (616)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99887777666
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=1.6e-08 Score=88.11 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=101.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcC
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHG 427 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 427 (616)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33456677889999999888753 3343 556778899999999999999999887 3566 6789999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHH-HHHHhh
Q 007134 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV-RRTMVK 475 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 475 (616)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 476654
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=2.4e-05 Score=82.17 Aligned_cols=335 Identities=10% Similarity=0.000 Sum_probs=169.3
Q ss_pred CHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHHHHc----CCCcHHH
Q 007134 92 PMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVS-GIKP-DTHTYPFLLKAISK----LADVRMG 162 (616)
Q Consensus 92 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-d~~t~~~ll~~~~~----~~~~~~a 162 (616)
+.+.++.+|++-. .|++..|..-+....+.+. .+....+|+..+.. |..| +...|...+..+.. .++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 5666666666433 2566666666666555542 23455566655543 3222 22333333333221 2345566
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHH-------------hcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCC-
Q 007134 163 EQTHSVAIRNGFESLVFVQNSLVHMYA-------------AFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGK- 224 (616)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~Li~~y~-------------~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~- 224 (616)
..+|+.+++.....-..+|......-. ..+.+..|..+++.+.. .+...|...+.--..++.
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~ 188 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK 188 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence 666666665321111112221111000 01123333433333221 233456555443222211
Q ss_pred ------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 225 ------PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 225 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
.+.+..+|++++... +.+...|...+.-+.+.|+.+.|..+++..++. +.+...+.. |+...+.++.
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~ 261 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV 261 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH
T ss_pred CcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH
Confidence 234567787777642 445566666666677788888888888888877 444333332 2222111111
Q ss_pred -HHHHHhcC--C-------C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHH--HHHHHHhcCCChHH
Q 007134 299 -QRVFREMR--K-------R---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV--GVLYACSHCGMVDE 363 (616)
Q Consensus 299 -~~~f~~m~--~-------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~ 363 (616)
..+.+... . + ....|...+....+.+..+.|..+|.+. ... ..+...|. +.+... ..++.+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ 338 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRAT 338 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHH
Confidence 11111110 0 0 1234555555555666777777787777 211 12233332 222221 1235777
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|..+|+...+.++ -+...|...++...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++.+
T Consensus 339 ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 339 PYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888877776432 223445666777777777777777777763 245667777766667777777777666664
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=6e-07 Score=88.44 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=147.6
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467788888888776431 110 0 01135666666655543 4567777888888877
Q ss_pred HHhcCCC-----C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHH
Q 007134 302 FREMRKR-----N----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 302 f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
|.+...- + ..+|+.+...|...|++++|+..|++..+. |-.+ -..++..+...+.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7765421 1 346788888899999999999998876542 2111 13567778888888 999999999
Q ss_pred HHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCc----HHHHHHHHHHHHHcCCcHHHHHH
Q 007134 368 FKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML-M---PPN----AVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 368 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~pd----~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
|++..+.+.-..+ ...+..+...|.+.|++++|++.|++.. + .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 4578888999999999999999998762 1 111 23666777778888999999999
Q ss_pred HHHHHhcCCCCCCch-----hhhhHHhHhcccchHHHH
Q 007134 436 RSTLLQLEPKHSGDY-----VLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~-----~~l~~~y~~~g~~~~a~~ 468 (616)
+++++ +.|...... ..++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 999765442 2344444 4566555544
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=5.7e-08 Score=84.48 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=88.1
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 376 GIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 376 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
.+.|+ ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 5667788888999999999999998873 556 67899999999999999999999999999999999999999
Q ss_pred hhHHhHhcccchHHHHHHHHHhhC
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++.+|.+.|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=4.3e-07 Score=99.92 Aligned_cols=188 Identities=12% Similarity=-0.008 Sum_probs=140.5
Q ss_pred HhcCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc
Q 007134 255 AELGALALGRRAHTYVW--------KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVN 323 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 323 (616)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888887 32 245667788888889999999999999988763 4677888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 324 GFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
|++++|++.|++..+. .| +...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998874 34 44677788888999999999 9999988763 22347788899999999999999999
Q ss_pred HHHhCC-CCCc-HHHHHHHHHHHHHcCC-----cHHHHHHHHHHHhcCCCCCC
Q 007134 403 YIQNML-MPPN-AVIWRTLLGACTIHGH-----SAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 403 ~~~~m~-~~pd-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 448 (616)
.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999884 6775 5677777777766555 23344444444445554443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=1.1e-07 Score=102.51 Aligned_cols=151 Identities=17% Similarity=-0.025 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
.|++++|++.|++..+. .| +...+..+...+...|++++|...|++..+ --+.+...|..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998774 34 467788888999999999999999999975 22334788999999999999999999
Q ss_pred HHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc---ccchHHHHHHHHHhhC
Q 007134 402 EYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE---QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 402 ~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~~ 476 (616)
+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887 3445 6789999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 007134 477 R 477 (616)
Q Consensus 477 ~ 477 (616)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.64 E-value=2.9e-07 Score=82.37 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=55.2
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 400 AYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--SGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 400 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444443 2345 56777888888888888888888888888888864 3467788888888888888888877654
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=4e-07 Score=84.00 Aligned_cols=126 Identities=9% Similarity=-0.024 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 393 (616)
.+...|.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+. -+.+...|..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3777888888888888888888774 34 4567777888888889999999888888763 22347778888877766
Q ss_pred cCC--HHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 394 AGL--VKQAYEYIQNMLMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 394 ~g~--~~~A~~~~~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.|. .+.+...++... .|+ ...+..+..++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 554 344555565543 333 344555566677788999999999999999887
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=4.2e-06 Score=81.52 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChH--HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC-----
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD--EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL----- 396 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----- 396 (616)
+++++++++++++.+.. +-|...|..-...+.+.|.++ ++++.++.+.+. -+.|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45555556555555432 123344444444444455554 555555555542 12334445444444444444
Q ss_pred -HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhcC---CCCCCchhhhhHHhHhcccchHHHHH
Q 007134 397 -VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAI-AEIARSTLLQLE---PKHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 397 -~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
++++++.++++ ...| |...|+.+...+...|+... .....+++++++ |.++.+...++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666554 2344 56677776666666666333 444555555554 55555666777777777777777777
Q ss_pred HHHHhh
Q 007134 470 RRTMVK 475 (616)
Q Consensus 470 ~~~m~~ 475 (616)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=7.2e-07 Score=79.80 Aligned_cols=154 Identities=14% Similarity=0.035 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA-CAE 256 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 256 (616)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34556667778888888888887764 356677778888888888888888887776542 333222211111 112
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHcCCHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-----AVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~ 331 (616)
.+....+...++..++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222233555666665543 3345666666666677777777777666654322 3356666666666666666666
Q ss_pred HHHHHH
Q 007134 332 LFKEME 337 (616)
Q Consensus 332 l~~~m~ 337 (616)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=2.3e-07 Score=78.02 Aligned_cols=109 Identities=8% Similarity=-0.072 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
..+......+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455556666667777777777666542 2234666666777777777777777777655 2344 456777777777
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...|++++|+..++++++++|+++..+..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777766655555443
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=1.5e-06 Score=80.08 Aligned_cols=128 Identities=12% Similarity=-0.067 Sum_probs=55.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCC
Q 007134 285 LLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGM 360 (616)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 360 (616)
+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 4445555555555555555443 124445555555555555555555555555542 22 23344444444433322
Q ss_pred --hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHH
Q 007134 361 --VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWR 417 (616)
Q Consensus 361 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~ 417 (616)
.+.+...++.... ..|....+..+..++...|++++|...|++. ...|+.....
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHH
Confidence 2223333333221 1111112222333444455566666666544 3455544333
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=1.9e-06 Score=83.81 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=86.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHH-HHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWN-SVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~ 220 (616)
..+..+...+...|+++.|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344555556666677777777777766654 44556666667777777777777777776654 3322221 1222344
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-DNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++.... .+...+..++..|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 5556666666666665542 234445555555555556666666655555554311 11344455555555555555554
Q ss_pred HHHH
Q 007134 300 RVFR 303 (616)
Q Consensus 300 ~~f~ 303 (616)
..|+
T Consensus 276 ~~~r 279 (287)
T 3qou_A 276 SXYR 279 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.2e-07 Score=79.71 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=89.5
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 377 IMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 377 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
+.|+ ...+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4455 566778889999999999999999886 3555 688999999999999999999999999999999999999999
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998876
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=8.8e-08 Score=83.14 Aligned_cols=95 Identities=8% Similarity=-0.044 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5567777888888999999999888763 445 67888888899999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988765
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=9.2e-07 Score=87.08 Aligned_cols=91 Identities=8% Similarity=-0.095 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----hh
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKV----GLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----N----AV 311 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~----~~ 311 (616)
+|..+...+...|++++|...+.+.++. |-. ....+++.+...|.+ |++++|...|++...- + ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444444445555555555555444332 100 012334444555555 5555555555443210 0 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
+++.+...|.+.|++++|+..|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=3.6e-06 Score=82.15 Aligned_cols=160 Identities=8% Similarity=-0.058 Sum_probs=116.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHH----HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHH
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGG-FVPGEV----TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGC 386 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 386 (616)
.+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877632 223321 2334666677778899999999888763222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML--------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYV 451 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~--------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 451 (616)
+...|...|++++|+..|++.- ..+. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887652 1122 2478889999999999999999999998765443 34577
Q ss_pred hhhHHhHhccc-chHHHHHHHHHhh
Q 007134 452 LLSNLYAYEQR-WLNVQEVRRTMVK 475 (616)
Q Consensus 452 ~l~~~y~~~g~-~~~a~~~~~~m~~ 475 (616)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999995 5999998887653
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.56 E-value=2.4e-06 Score=79.74 Aligned_cols=186 Identities=11% Similarity=-0.033 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---hHH
Q 007134 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-D-NVNVNNALLDFYSKCGIIIAAQRVFREMRK--RN-AV---SWS 314 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~---~~~ 314 (616)
+...+......+...|++++|...++.+++.... + ....+..+..+|.+.|++++|...|+++.+ |+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677889999999999999999986422 1 245777889999999999999999999763 32 22 455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 315 TLVVGLAV------------------NGFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 315 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999884 45542 1111110 001111111
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.....+...|.+.|++++|...|+++. ..|+ ...+..+..++...|+.++|...++++....|++...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122356778899999999999998873 3343 2578889999999999999999999999988886543
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=9e-07 Score=81.63 Aligned_cols=123 Identities=9% Similarity=-0.070 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~ 426 (616)
..+...+...|++++|...|+... .|+...|..+...|.+.|++++|++.+++.. ..| +...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556677777777776553 3566677777777777777777777776652 334 567788888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCC----------------CchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 427 GHSAIAEIARSTLLQLEPKHS----------------GDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888888888766 67788999999999999999999888764
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=2.1e-05 Score=76.65 Aligned_cols=224 Identities=11% Similarity=0.013 Sum_probs=159.0
Q ss_pred CccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---C
Q 007134 224 KPNEALTLFREMASEGVEPDG-YTMVSLFSACAELG--ALALGRRAHTYVWKVGLSDNVNVNNALLDFY----SKC---G 293 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g 293 (616)
..++|++++.+++.. .|+. ..++.--.++...+ +++++...++.++... +-+..+|+.-...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 345777777777764 3433 34455555556666 7777777777777664 33445555443333 444 7
Q ss_pred CHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC------hH
Q 007134 294 IIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGK--EALELFKEMEIGGFVPGEVTFVGVLYACSHCGM------VD 362 (616)
Q Consensus 294 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 362 (616)
++++++++++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.......+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888876 357778888877888888888 99999999988653 356677666666666666 88
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ-AYEYIQNML-M----PPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
++++.++.+.. --+-|...|+-+-..+.+.|+..+ +.++.++.- . ..+...+..+...+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 89999888876 334568889888888888888555 455666652 1 236788999999999999999999999
Q ss_pred HHHHh-cCCCCCCchhhh
Q 007134 437 STLLQ-LEPKHSGDYVLL 453 (616)
Q Consensus 437 ~~~~~-~~p~~~~~~~~l 453 (616)
+.+.+ .+|.....+...
T Consensus 282 ~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTCGGGHHHHHHH
T ss_pred HHHHhccChHHHHHHHHH
Confidence 99986 798765555443
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=3.2e-06 Score=78.12 Aligned_cols=172 Identities=13% Similarity=0.005 Sum_probs=118.1
Q ss_pred HHHHHHhhCC-CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCC----CcHHHHHHHHHH
Q 007134 95 YAHNIFSHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA----DVRMGEQTHSVA 169 (616)
Q Consensus 95 ~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~ 169 (616)
+|.+.|+... ..++.++..|...|...+++++|++.|++..+.| +...+..+-..+.. + +.++|.+.++..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3445554333 2467777777777777788888888888877654 44555556666655 5 788888888888
Q ss_pred HHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 007134 170 IRNGFESLVFVQNSLVHMYAA----FGHVKDACKVFELMSERD-----LVAWNSVINGFAS----NGKPNEALTLFREMA 236 (616)
Q Consensus 170 ~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 236 (616)
.+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..+++.|...|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7755 45666777777776 778888888888876643 4677778888877 777888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-C-----chHHHHHHHHHHHHhCC
Q 007134 237 SEGVEPDGYTMVSLFSACAEL-G-----ALALGRRAHTYVWKVGL 275 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~-~-----~~~~a~~~~~~~~~~g~ 275 (616)
+. ..+...+..+...|... | +.++|...+....+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 65 22334555555555432 2 67888888887777763
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=1.8e-06 Score=84.27 Aligned_cols=163 Identities=7% Similarity=-0.088 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-H----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC--CCC--hh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-E----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI--MPK--IE 382 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 382 (616)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888888877765422111 1 12333445567778888888888877642111 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------C
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNML----MPPN-----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------S 447 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~ 447 (616)
.|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.++. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888888889999998888887652 1122 2588888899999999999999999987654321 3
Q ss_pred CchhhhhHHhHhcccchHH-HHHHHHHh
Q 007134 448 GDYVLLSNLYAYEQRWLNV-QEVRRTMV 474 (616)
Q Consensus 448 ~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 474 (616)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567889999999999999 77677654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=4.7e-06 Score=76.67 Aligned_cols=144 Identities=8% Similarity=-0.108 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 362 (616)
..+...|...|++++|.+.|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766532 223455666666666666676
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+|...|+...+...-.+... +...| +...| +...|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666654211111000 00000 01233 236777788888888888888888888888
Q ss_pred cCCCC
Q 007134 442 LEPKH 446 (616)
Q Consensus 442 ~~p~~ 446 (616)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88874
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=1.7e-06 Score=75.91 Aligned_cols=127 Identities=6% Similarity=-0.034 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566677777777777766552 22346667777777778888888887776652 334 5678888888899
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhh--hHHhHhcccchHHHHHHHHHhh
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLL--SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|...+++++++.|.+...+..+ +..+.+.|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999877766444 4447788999999998876643
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=5.1e-07 Score=87.66 Aligned_cols=191 Identities=9% Similarity=-0.105 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344445555555666666666665543 2245556666666666666666666666665532 123345555566666
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
..|++++|...|+...+...-.+ ..+...+....+..+...... .......++..+...+.. + ..|+.++|.+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 66666666666666544211001 011111111111111111111 222223334444333322 2 268888999999
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhc-ccchHHHHHHHHHhhC
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYE-QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 476 (616)
+++++++|++......+...+.+. +.+++|.++|....+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988887665556666666665 7788999999887653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=1.8e-06 Score=71.41 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++. ..| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666542 12345566667777777777777777776652 223 567777888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777777665543
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.1e-06 Score=75.50 Aligned_cols=95 Identities=11% Similarity=-0.115 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455666777888888888888887762 445 67788888889999999999999999999999999988999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988765
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=1.5e-06 Score=72.53 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH
Q 007134 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGA 422 (616)
Q Consensus 345 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a 422 (616)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776652 22346667777777778888888887776652 334 56778888888
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999988988887888888888877765
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.8e-06 Score=72.44 Aligned_cols=115 Identities=7% Similarity=-0.049 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++.. ..| +...|..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555556666666666666666553 122245566666666667777777776666552 233 567777888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888877777777777776553
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=1e-06 Score=87.97 Aligned_cols=94 Identities=14% Similarity=0.000 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888888899999999999999876 3445 67899999999999999999999999999999999999999999999
Q ss_pred hcccchHH-HHHHHHHh
Q 007134 459 YEQRWLNV-QEVRRTMV 474 (616)
Q Consensus 459 ~~g~~~~a-~~~~~~m~ 474 (616)
+.|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666654
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.41 E-value=1.7e-05 Score=83.38 Aligned_cols=340 Identities=8% Similarity=-0.057 Sum_probs=186.1
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC-cHHHHHHHHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQTHSVAIR 171 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~ 171 (616)
++.|+.+|+... ..+-. |+++.+..+|++.+.. .|+...|..-++...+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 666777776542 22222 8899999999998874 4787787777776655553 4567788888776
Q ss_pred h-CC-CCcHHHHHHHHHHHH----hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH
Q 007134 172 N-GF-ESLVFVQNSLVHMYA----AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245 (616)
Q Consensus 172 ~-g~-~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (616)
. |. ..+..+|...+..+. ..|+++.+.++|++...-....+..+-..| ..+... .+..
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y-------------~~fE~~---~~~~ 140 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDF-------------ENFELE---LNKI 140 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHH-------------HHHHHH---HCHH
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHH-------------HHHHHH---hccc
Confidence 4 53 335677777776554 346788899999887541111112222222 111111 0111
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CChhhHHH
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG--I-----IIAAQRVFREMRK---RNAVSWST 315 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~-----~~~A~~~f~~m~~---~~~~~~~~ 315 (616)
+...++... .+.+..|+.++..+.+.--..+...|...++.-...+ - .+.+..+|+++.. .+...|..
T Consensus 141 ~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ 218 (493)
T 2uy1_A 141 TGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFF 218 (493)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 112222111 1233334444444332100012334444444322211 0 2345566666543 35667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC--------CCC---ChhhH
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG--------IMP---KIEHF 384 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p---~~~~~ 384 (616)
.+.-+.+.|+.++|.++|++.... |+...+... +......++ +++.+.+.+- ..+ ....|
T Consensus 219 ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 219 YSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 777777888888888888888876 444322211 111111111 1233322210 001 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CcHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACT-IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
...+..+.+.|.++.|..+|++.... .+..+|......-. ..++.+.|..+++.+++..|+++..+...++...+.|+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 77777777788889999888877311 13344433222222 23368899999999888778766555566666677888
Q ss_pred chHHHHHHHHH
Q 007134 463 WLNVQEVRRTM 473 (616)
Q Consensus 463 ~~~a~~~~~~m 473 (616)
.+.|+.+++..
T Consensus 370 ~~~aR~l~er~ 380 (493)
T 2uy1_A 370 EENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 88888888876
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=1.7e-05 Score=77.22 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---Ch------hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSER---DL------VAWNSVINGFASNGKPNEALTLFREMASEGVE-PD----GYTMVSL 250 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l 250 (616)
+..+.+.|++++|.+.+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566666666666666654331 11 12223444455555666666666666553211 11 1134445
Q ss_pred HHHHHhcCchHHHHHHHHHHH
Q 007134 251 FSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~ 271 (616)
...+...|++++|...+..+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555444
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=1e-05 Score=78.89 Aligned_cols=162 Identities=6% Similarity=-0.116 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CcCC--HH
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRKR---NA------VSWSTLVVGLAVNGFGKEALELFKEMEIGG---FVPG--EV 346 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~ 346 (616)
.+...+..|...|++++|.+.++...+. +. ..+..+...+...|++++|+..+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667778888898888888755321 11 223445566777889999999999887532 1222 34
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-cH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNML-------MPP-NA 413 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~ 413 (616)
+++.+...+...|++++|...|++..+.....|+ ..++..+...|.+.|++++|++.+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988742222232 2578888999999999999999987651 111 25
Q ss_pred HHHHHHHHHHHHcCCcHHH-HHHHHHHHhc
Q 007134 414 VIWRTLLGACTIHGHSAIA-EIARSTLLQL 442 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~~ 442 (616)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7888899999999999999 7778887643
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=1.6e-06 Score=82.58 Aligned_cols=135 Identities=12% Similarity=-0.065 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--IEHFGCMVDLL 391 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 391 (616)
-.....+...|++++|.++|..+...+ |+....-.+...+.+.+++++|+..|+..... ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 345566777788888888887776543 44434444445677788888888888755431 0111 23566777788
Q ss_pred HhcCCHHHHHHHHHhCC---CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 392 GRAGLVKQAYEYIQNML---MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~---~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
.+.|++++|+..|++.. ..|. ...+..+..++...|+.++|...+++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 2243 346677777888889999999999999888887 5444444
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=1e-06 Score=78.71 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=84.8
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH-HHHcCCc--H
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGA-CTIHGHS--A 430 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a-~~~~g~~--~ 430 (616)
...|++++|...++...+. .+.+...|..+...|...|++++|...|++.. ..| +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776653 22346677777777888888888888777652 333 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888878888888888888888888888887654
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.4e-06 Score=72.81 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888766 2344 67888888889999999999999999999999998888899999999
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=1.6e-06 Score=75.14 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++.. ..| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555666777888888888888887652 23357777888888888888888888887762 445 567888889999
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
...|++++|...+++++++.|+++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999987654
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=1.6e-06 Score=72.04 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667778889999999999998773 455 678899999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhC
Q 007134 460 EQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~ 476 (616)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1e-05 Score=73.56 Aligned_cols=151 Identities=13% Similarity=-0.022 Sum_probs=77.5
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCcC-CHHHHHHHHHHHhcCCChH
Q 007134 291 KCGIIIAAQR---VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI----GGFVP-GEVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 291 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 362 (616)
..|++++|.+ .+..-+.....+++.+...+...|++++|+..+++... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666 44332222345566666666666777777766666544 11122 1234555555666667777
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHhCC------CCCc--HHHHHHHHHHHHHcCCc
Q 007134 363 EGFSYFKRMKDEYGIMP-K----IEHFGCMVDLLGRAGLVKQAYEYIQNML------MPPN--AVIWRTLLGACTIHGHS 429 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~pd--~~~~~~ll~a~~~~g~~ 429 (616)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 76666666544311112 1 2334555556666666666666554431 0111 12344555555666666
Q ss_pred HHHHHHHHHHHh
Q 007134 430 AIAEIARSTLLQ 441 (616)
Q Consensus 430 ~~a~~~~~~~~~ 441 (616)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=6.3e-06 Score=74.99 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=21.4
Q ss_pred cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 191 FGHVKDACK---VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 191 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555543
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=4.3e-06 Score=67.57 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNL 456 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 456 (616)
...+..+...+.+.|++++|...+++.. ..| +..+|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677777888888888888887662 333 5677888888888888999999999988888888 77788888888
Q ss_pred hHhc-ccchHHHHHHHHHhhCC
Q 007134 457 YAYE-QRWLNVQEVRRTMVKER 477 (616)
Q Consensus 457 y~~~-g~~~~a~~~~~~m~~~~ 477 (616)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 99999998888886543
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=7.8e-06 Score=74.48 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888888999999988887762 344 678888999999999999999999999999999998888999999998
Q ss_pred cccchHHH-HHHHHHhhC
Q 007134 460 EQRWLNVQ-EVRRTMVKE 476 (616)
Q Consensus 460 ~g~~~~a~-~~~~~m~~~ 476 (616)
.|+.+++. ..++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 555555443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=7.1e-06 Score=78.19 Aligned_cols=181 Identities=8% Similarity=-0.095 Sum_probs=129.9
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCcCCH---------------
Q 007134 291 KCGIIIAAQRVFREMRK---RNAVSWSTL-------VVGLAVNGFGKEALELFKEMEIGGFVPGE--------------- 345 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 345 (616)
..++...|.+.|.+... .....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777653 245567766 3455555555555555555443 22211
Q ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc----HH
Q 007134 346 -------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN----AV 414 (616)
Q Consensus 346 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd----~~ 414 (616)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667789999999999998874 235533666677789999999999999987754443 24
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CC-CCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLE--PK-HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999997433 43 3345678899999999999999999999763
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.22 E-value=6.1e-06 Score=79.98 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHhC
Q 007134 395 GLVKQAYEYIQNM 407 (616)
Q Consensus 395 g~~~~A~~~~~~m 407 (616)
+.+++|.++|.+.
T Consensus 184 ~~~~~a~~~f~~a 196 (281)
T 2c2l_A 184 KYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666655
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=3.3e-06 Score=74.31 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+.+.|++++|...|+...+. .+.+...|..+...|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444455555555555555554431 1123444444444444555555554444443 1222 2344444444444
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
..|++++|...++++++++|+++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HccCHHHHHHHHHHHHHhCCCchH
Confidence 445555555555544444444443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=5.3e-06 Score=73.96 Aligned_cols=125 Identities=9% Similarity=0.019 Sum_probs=90.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH-HHhcCCH--
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL-LGRAGLV-- 397 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 397 (616)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777777777776642 2345667777777788888888888888776532 2346667777777 6788887
Q ss_pred HHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 398 KQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 398 ~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
++|...+++.. ..| +...|..+...+...|++++|...+++++++.|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 88888887762 345 5678888888999999999999999999999998654
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.21 E-value=6.4e-06 Score=71.37 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34555556666677777777777776642 2234667777777777788888887777666 2445 457788888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCC
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
...|++++|+..+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888873
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=3.6e-06 Score=70.66 Aligned_cols=94 Identities=5% Similarity=-0.091 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-------chhh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG-------DYVL 452 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 452 (616)
..+..+...+.+.|++++|++.|++. .+.| +..+|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888999999999999776 3556 6788999999999999999999999999999887655 4556
Q ss_pred hhHHhHhcccchHHHHHHHHHhh
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888889999999999988754
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=6.1e-06 Score=70.69 Aligned_cols=105 Identities=13% Similarity=-0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++.. ..| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34445556677788888888888877652 22356777788888888888888888887762 444 567788888899
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
...|++++|...+++++++.|+++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999999987755443
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=7.8e-06 Score=69.14 Aligned_cols=98 Identities=10% Similarity=-0.048 Sum_probs=76.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
.+...|..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34666777777788888888888887765 2334 567788888888888888888888888888888888888888888
Q ss_pred hHhcccchHHHHHHHHHhhC
Q 007134 457 YAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 457 y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888877653
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=1.6e-05 Score=64.72 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3344444555555555555555555442 12234555555666666666666666665541 233 4556666666777
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
..|++++|...++++++.+|+++..+..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777777777777777765544444433
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=1.1e-05 Score=70.95 Aligned_cols=96 Identities=8% Similarity=-0.132 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+...|..+...+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...|+...+. -+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566677777777777777777777777642 224566667777777777777777777777653 223366777777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 007134 389 DLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m 407 (616)
.+|.+.|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7777777777777777665
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.0011 Score=65.27 Aligned_cols=178 Identities=10% Similarity=-0.025 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHcCC-CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 188 (616)
|+.+-....+.+..++|++++++++.. .|+..| |+.--..+...+ +++++.+.++.+++.. +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344334444455567888888888874 455544 454444555556 4788888888887764 55666777766666
Q ss_pred Hhc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCCcc--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 189 AAF-G-HVKDACKVFELMSER---DLVAWNSVINGFASNGKPN--------EALTLFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 189 ~~~-g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.+. + ++++++++++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 777888888877653 4556665555555545555 6777777776654 235555555555554
Q ss_pred hcCc-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007134 256 ELGA-------LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293 (616)
Q Consensus 256 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 293 (616)
+.+. ++++.+....++... +.|...++-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4443 344444444444443 334444444443443333
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.00074 Score=66.48 Aligned_cols=172 Identities=13% Similarity=-0.000 Sum_probs=91.9
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC-G-II 295 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~ 295 (616)
..+.+..++|++++++++..+ +-+...++.--..+...+ .++++..+++.+.+.. +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445567777777777643 223334444444555555 4677777777766654 44555565555555554 5 66
Q ss_pred HHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC----
Q 007134 296 IAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGK--------EALELFKEMEIGGFVPGEVTFVGVLYACSHCGM---- 360 (616)
Q Consensus 296 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 360 (616)
++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 7777777777653 4455655444444444444 66666666666432 244555555555555543
Q ss_pred ---hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 361 ---VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 361 ---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
++++++.++++.. --+-|...|+-+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 4455555554443 12223444444444444433
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.16 E-value=3.5e-05 Score=67.25 Aligned_cols=127 Identities=7% Similarity=-0.103 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|+...+. .+.+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666677777777777777766532 224556666666777777777777777777653 22346667777777
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-cHHHHH--HHHHHHHHcCCcHHHHHHHHHHH
Q 007134 391 LGRAGLVKQAYEYIQNML-MPP-NAVIWR--TLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~-~~p-d~~~~~--~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+.+.|++++|...+++.. ..| +...+. .+...+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 778888888887776652 233 344443 33334666778888888777664
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=4.2e-05 Score=62.80 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+.+.|++++|+..|+++.... +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444443321 123334444444444444444444444443321 12233333344444444
Q ss_pred CchHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWK 272 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~ 272 (616)
|++++|...+..+.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1e-05 Score=67.47 Aligned_cols=95 Identities=7% Similarity=-0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555666666666666666542 2233566666677777777777777777655 2344 4667777777888
Q ss_pred HcCCcHHHHHHHHHHHhcC
Q 007134 425 IHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~ 443 (616)
..|++++|...++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=1.1e-05 Score=65.77 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5567788889999999999999998873 344 67889999999999999999999999999999999989999999999
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988753
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=2e-05 Score=82.20 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888889999999999999998763 445 67899999999999999999999999999999999999999999999
Q ss_pred hcccchHHHH-HHHHHhh
Q 007134 459 YEQRWLNVQE-VRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~-~~~~m~~ 475 (616)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998874 4565543
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.7e-05 Score=67.86 Aligned_cols=95 Identities=14% Similarity=-0.030 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
...+..+...+.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555666666666666666666554 34454 4566666666666677777777777666666666666666666
Q ss_pred HhHhcccchHHHHHHHHHhh
Q 007134 456 LYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~ 475 (616)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66677777777766666544
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=3.8e-05 Score=64.10 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
++..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45677777788888888888888888877642 2244556666667777777777777777777664 345666666777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC
Q 007134 187 MYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASN 222 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 222 (616)
+|.+.|++++|.+.|++..+ .+...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 77777777777777766532 2333444444444443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=4e-05 Score=65.44 Aligned_cols=108 Identities=11% Similarity=-0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTL 419 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~l 419 (616)
..+..+...+...|++++|...|+...+ ..|+ ...|..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444555555555555555442 2233 445556666666667777776666554 2334 56677777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
..++...|++++|...++++++++|++...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7888888888888888888888888766555444444
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=4.3e-05 Score=79.97 Aligned_cols=116 Identities=8% Similarity=-0.095 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666665543 2244555555555556666666666665555532 1123444555555555555555
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDL--LGRAGLVKQAYEYIQ 405 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 405 (616)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555554421 1112233333333 444455555555544
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=9.5e-06 Score=85.03 Aligned_cols=115 Identities=6% Similarity=-0.034 Sum_probs=73.8
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|++.+++. ...| +..+|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566666666666666542 1223566666777777777777777777655 2444 456777777777777777777
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHH--hHhcccchHHHHHHH
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNL--YAYEQRWLNVQEVRR 471 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 471 (616)
+..++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777666666666 666777777777766
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=1.7e-05 Score=69.57 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467888888889999999999999999999999888899999999999999999999888765
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.0007 Score=66.29 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC-HHHHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG--IIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF-GKEALELF 333 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 333 (616)
++++..+++.+.... +-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666553 445566665555555666 36777777776653 456666666666666666 47777777
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHhcC--------------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-----
Q 007134 334 KEMEIGGFVPGEVTFVGVLYACSHC--------------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA----- 394 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----- 394 (616)
.++.+..+ -|...|+.....+.+. +.++++.+.+..... --+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 77776542 2444554443333332 335566666666554 2223355555444444333
Q ss_pred ------CCHHHHHHHHHhC-CCCCcHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 395 ------GLVKQAYEYIQNM-LMPPNAVIWRTLLGAC-----TIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 395 ------g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.+++|...+-|.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 3456666666555 244543 232211111 1234555666666666666665443333
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.4e-05 Score=76.99 Aligned_cols=162 Identities=7% Similarity=-0.144 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhh---CCCCC-hhh
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPK-IEH 383 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~ 383 (616)
+..+...|...|++++|.+.+.++... +..++. ...+.+-..+...|+.+.+..+++...... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777788888888888888776542 111121 122223334455788888888887765421 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-------C
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-------G 448 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-------~ 448 (616)
+..+...|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++...+... .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788888889999999988887651 2332 45778888889999999999999888865443221 2
Q ss_pred chhhhhHHhHhcccchHHHHHHHHHh
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34466777778888988888776654
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.02 E-value=9.2e-05 Score=61.29 Aligned_cols=116 Identities=15% Similarity=-0.042 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344455555556666666666666655432 123445555555666666666666666666542 12235556666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCc
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~ 429 (616)
+.+.|++++|...+++. ...| +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66666666666666554 2233 445555555555555543
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.02 E-value=3.2e-05 Score=65.27 Aligned_cols=101 Identities=8% Similarity=-0.169 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLG 421 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~ 421 (616)
+...+..+...+...|++++|...|+..... .+.+...|..+...+.+.|++++|...+++.. ..| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666777777777777766552 22335667777777777777777777776652 334 5678888888
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
++...|++++|...+++++++.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhH
Confidence 8888889999999998888888773
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=3.3e-05 Score=76.86 Aligned_cols=143 Identities=7% Similarity=-0.066 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
+...|..+...|.+.|++++|+..|++.++.. |+...+ ..+.+.++. +....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45677888888888888888888888887743 333110 001111110 011345566666
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 187 MYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
+|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 345566666666666677777776666666542 22445555666666666666666
Q ss_pred -HHHHHHHH
Q 007134 264 -RRAHTYVW 271 (616)
Q Consensus 264 -~~~~~~~~ 271 (616)
..++..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.00045 Score=67.67 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=131.2
Q ss_pred HHHHHHHHHhcC---CCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC-hHHHHHHH
Q 007134 295 IIAAQRVFREMR---KRNAVSWSTLVVGLAVNG--FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM-VDEGFSYF 368 (616)
Q Consensus 295 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 368 (616)
+++++.+++.+. .++..+|+.-.-.+...| .++++++++.++.+.. +-|...|+.-...+.+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777765 357788988888888888 4899999999999864 2366777777777777888 58999999
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc------
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRA--------------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH------ 426 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~------ 426 (616)
+.+.+. -+-|...|+.....+.+. +.++++++.+++.- ..| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999873 345677787776666655 55888999887763 556 788898766655544
Q ss_pred -----CCcHHHHHHHHHHHhcCCCCCCchhhhhHHh---HhcccchHHHHHHHHHhhCC
Q 007134 427 -----GHSAIAEIARSTLLQLEPKHSGDYVLLSNLY---AYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 427 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~~~ 477 (616)
+.++++++.++++++++|++.-.+..++... ...|..++....+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998743333332221 23567778888888887643
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.97 E-value=9.2e-06 Score=73.97 Aligned_cols=161 Identities=11% Similarity=-0.086 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 158 (616)
.+......| +++.|.+.|+.... .....|..+...+.+.|++++|+..|++..... |+...+... .
T Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred hhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 334444455 77777777764332 245678888889999999999999999998742 222100000 0
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
... ... .....++..+..+|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..|++.
T Consensus 79 ~~~----~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LLD----KKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH----HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH----HHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 000 00123444555555555666655555554432 24445555555666666666666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 007134 236 ASEGVEPDGYTMVSLFSACAELGALALGR 264 (616)
Q Consensus 236 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (616)
.... +-+...+..+..++...++.+++.
T Consensus 149 l~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 223344444444445555544444
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=6.1e-05 Score=60.54 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP---NAVIWRTLLGAC 423 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---d~~~~~~ll~a~ 423 (616)
+..+...+...|++++|...|+...+. .+.+...|..+...+.+.|++++|.+.+++.. ..| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344445555666666666666665542 22335566666777777777777777776652 333 467778888888
Q ss_pred HHc-CCcHHHHHHHHHHHhcCCCCC
Q 007134 424 TIH-GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 424 ~~~-g~~~~a~~~~~~~~~~~p~~~ 447 (616)
... |++++|.+.++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888887643
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=1.6e-05 Score=68.43 Aligned_cols=61 Identities=10% Similarity=-0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhc-------CCCCCCch----hhhhHHhHhcccchHHHHHHHHHhh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQL-------EPKHSGDY----VLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.|..+..++...|++++|+..+++++++ +|++...| ..++.++...|++++|...+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777777 77777777 7777777777777777777777654
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=2.9e-05 Score=64.52 Aligned_cols=107 Identities=7% Similarity=-0.083 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C----CCc----HHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M----PPN----AVIWRT 418 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~pd----~~~~~~ 418 (616)
+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++.. . .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444455555555555554432 12234445555555555566666655555441 1 112 556667
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
+...+...|++++|...++++++..|+ +.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 777777788888888888888777763 44444444443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=5.4e-06 Score=68.26 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHhCC-C---CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 394 AGLVKQAYEYIQNML-M---PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 394 ~g~~~~A~~~~~~m~-~---~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
.|++++|+..|++.. . .| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666665542 2 24 345666666677777777777777777777777777677777777777777777777
Q ss_pred HHHHHhh
Q 007134 469 VRRTMVK 475 (616)
Q Consensus 469 ~~~~m~~ 475 (616)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766644
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=3.8e-05 Score=63.59 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 426 (616)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++. ...| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445566777777777777777652 2234677777778888888888888888766 3455 567888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCC
Q 007134 427 GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~ 447 (616)
|++++|+..++++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999888888743
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=2.4e-05 Score=65.29 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCc-H---HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhhhHHh
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-MPPN-A---VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLLSNLY 457 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-~~pd-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 457 (616)
.+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455666667777766666542 2222 2 356666667777777777777777777777776 44566777777
Q ss_pred HhcccchHHHHHHHHHhh
Q 007134 458 AYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~ 475 (616)
...|++++|.+.++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776654
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=0.00012 Score=63.23 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCc-CC----HHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFV-PG----EVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555554431100 11 1233444444555555555555555443
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=3.2e-05 Score=64.27 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-------CCchh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-------SGDYV 451 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 451 (616)
...|..+...+...|++++|...|++.. ..| +..++..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4567788889999999999999998773 334 67889999999999999999999999999988876 56778
Q ss_pred hhhHHhHhcccchHHHHHHHHHhh
Q 007134 452 LLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 899999999999999999998876
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=5.8e-05 Score=76.13 Aligned_cols=138 Identities=7% Similarity=-0.076 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMV 388 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 388 (616)
...|..+...+.+.|++++|++.|++..+. .|+.. .....++ .. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HH---HHHHHHHHHHHHHH
Confidence 345777777788888888888888877652 11100 0001111 10 1112 356788889
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 389 DLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 4566 6789999999999999999999999999999999888888899998888888777
Q ss_pred HHH
Q 007134 467 QEV 469 (616)
Q Consensus 467 ~~~ 469 (616)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 643
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00037 Score=71.66 Aligned_cols=122 Identities=10% Similarity=-0.107 Sum_probs=77.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--C--CcCC-HHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----R----NAVSWSTLVVGLAVNGFGKEALELFKEMEIG--G--FVPG-EVTFVGV 351 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~l 351 (616)
...+...|+.+.|.++++.... . -..++..+...|...|++++|..++++.... + -+|. ...+..+
T Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
T 4b4t_Q 102 EKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLE 181 (434)
T ss_dssp HHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 3344445666666666654431 1 1235666777788888888888888776542 1 1222 2456777
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 352 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.+.
T Consensus 182 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 182 SKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78888888888888888876543211121 345666777778888888887777554
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=3.5e-05 Score=67.45 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 567888888999999999999998776 3455 678999999999999999999999999999999866
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=6e-05 Score=65.11 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc----H
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN----A 413 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd----~ 413 (616)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677778888999999999999988763221122 2467888899999999999999997751 1112 4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888889999999999999999997653321 34567899999999999999999987754
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=2.6e-05 Score=77.75 Aligned_cols=147 Identities=12% Similarity=-0.076 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445667777777888888888888887763 454332 223333443332221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh-HhcccchHH
Q 007134 390 LLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY-AYEQRWLNV 466 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~a 466 (616)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999776 3445 6788999999999999999999999999999999888888888774 345677778
Q ss_pred HHHHHHHhhC
Q 007134 467 QEVRRTMVKE 476 (616)
Q Consensus 467 ~~~~~~m~~~ 476 (616)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877543
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.81 E-value=0.00065 Score=72.44 Aligned_cols=168 Identities=8% Similarity=-0.065 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC--
Q 007134 295 IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF----------GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG-- 359 (616)
Q Consensus 295 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 359 (616)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+... -+...|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 4566777776653 345567766666666666 8889999998887542 24566777777777888
Q ss_pred ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc----------
Q 007134 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-LVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH---------- 426 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---------- 426 (616)
+++++.+.++.+.+. -+.+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999998873 3345777887777788888 889999998887 3556 778898888777663
Q ss_pred ----CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchH
Q 007134 427 ----GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465 (616)
Q Consensus 427 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 465 (616)
+.++++.+.+++++.++|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999998888655
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.00018 Score=74.96 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=93.9
Q ss_pred HhcCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRT 418 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 418 (616)
+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467888888877777655321 1222 556788888888889988888888665 245654 68899
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh-----cCCCCCCc---hhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQ-----LEPKHSGD---YVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
|...|...|++++|+.+++++++ ++|+.|.+ ...+..++...|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 57776544 3468888889999999999999998754
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00013 Score=62.78 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCc-HHHH----HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPN-AVIW----RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd-~~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.|..+..++.+.|++++|+..+++. .+.|| ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665444 24785 5688 999999999999999999999999999998876
Q ss_pred hhhhh
Q 007134 450 YVLLS 454 (616)
Q Consensus 450 ~~~l~ 454 (616)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65443
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00017 Score=59.87 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHc
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIH 426 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~ 426 (616)
..+...|++++|...|+.+.+...-.+. ...+..+...+.+.|++++|...|++.. ..|+ ...+..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444556666666666655543111110 1355556666667777777776666552 2232 45667777778888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCC
Q 007134 427 GHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
|++++|...++++++..|+++.
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHH
T ss_pred CCHHHHHHHHHHHHHHCCCChH
Confidence 8888888888888888887543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=7.2e-05 Score=74.50 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998653222111 1222333444433221 13677788888999
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHH-HHHcCCcHHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGA-CTIHGHSAIAEIA 435 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a-~~~~g~~~~a~~~ 435 (616)
|++++|...++...+. -+.+...|..+..+|...|++++|...|++.. ..|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 23457889999999999999999999998873 6664 4555555554 3455677888999
Q ss_pred HHHHHhcCCCCC
Q 007134 436 RSTLLQLEPKHS 447 (616)
Q Consensus 436 ~~~~~~~~p~~~ 447 (616)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888754
No 191
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00036 Score=58.13 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444445555555555554443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.70 E-value=2.8e-05 Score=63.88 Aligned_cols=91 Identities=10% Similarity=0.039 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHhHHhhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYG--IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~ 433 (616)
.|++++|...|++..+. + -+.+...+..+...|.+.|++++|++.|++.. ..| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665531 1 01224556667777777777777777776652 344 4667777888888888888888
Q ss_pred HHHHHHHhcCCCCCCc
Q 007134 434 IARSTLLQLEPKHSGD 449 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~ 449 (616)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=7.6e-05 Score=60.11 Aligned_cols=92 Identities=15% Similarity=-0.044 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYV 451 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 451 (616)
+...+..+...+.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888999999999988776 2444 67888999999999999999999999999999987 55666
Q ss_pred hhhHHhHhcccchHHHHHHH
Q 007134 452 LLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~ 471 (616)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777776655444
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.66 E-value=0.0001 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999999999999999999999999999999988765
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00022 Score=71.81 Aligned_cols=112 Identities=4% Similarity=-0.105 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~ 424 (616)
..+..+...+.+.|++++|...|++..+.. ++ .......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345555566666677777776666665410 00 00000111111 1234 4578899999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=4.2e-05 Score=65.70 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=67.6
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 392 GRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGH----------SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556677777777655 2445 56677777777766665 4699999999999999999999999999998
Q ss_pred cc-----------cchHHHHHHHHHhhC
Q 007134 460 EQ-----------RWLNVQEVRRTMVKE 476 (616)
Q Consensus 460 ~g-----------~~~~a~~~~~~m~~~ 476 (616)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00034 Score=53.81 Aligned_cols=81 Identities=23% Similarity=0.220 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888766 2334 56788888888999999999999999999999988888888887776
Q ss_pred hcc
Q 007134 459 YEQ 461 (616)
Q Consensus 459 ~~g 461 (616)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.49 E-value=0.00029 Score=57.36 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 400 AYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 400 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455444 3445 5678888888888888888888888888888888888888888888888888888888887765
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.45 E-value=0.00088 Score=69.62 Aligned_cols=120 Identities=5% Similarity=-0.137 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC----------------HHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG----------------EVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
..|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...|+.+.+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34555666666677777777777666652 222 356777777788888888888888887752
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHH
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEI 434 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~ 434 (616)
-+.+...|..+..+|.+.|++++|...|++. .+.| +..++..+..++...++.+++..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334777778888888888888888888776 4556 44577777777777777776654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.23 E-value=0.001 Score=51.81 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 411 PNAVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+|...+..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|...++++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888888865555 7999999999999999999999999999999999999999999998754
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.00082 Score=68.88 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCC---------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCCCC---Cc
Q 007134 388 VDLLGRAGLVKQAYEYIQNML---------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ-----LEPKHS---GD 449 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 449 (616)
+.-+.+.|++++|++++++.- ..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556777777777776541 2232 35788888888888999999888888853 345544 34
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 521 (616)
+..|+.+|..+|++++|..++++..+--.. .-...||...+++..|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 668999999999999999999887652111 112469999999988888776665
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00062 Score=54.55 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++...|..+...+...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356788889999999999999999999999999999999999999999999999999999998764
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.17 E-value=0.002 Score=67.08 Aligned_cols=123 Identities=14% Similarity=-0.060 Sum_probs=84.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhC---CCc---CC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh----CC-CCC-hhhHH
Q 007134 319 GLAVNGFGKEALELFKEMEIG---GFV---PG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY----GI-MPK-IEHFG 385 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~---g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~~~ 385 (616)
.+...|++++|+.++++..+. -+- |+ ..+++.|..+|...|++++|..++++..+-+ |- -|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677888888877776542 112 22 2567777888888888888888887765421 21 122 55688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------C-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNM--------L-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m--------~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
.|...|...|++++|+.++++. | -.|+. .+...|-.++...+.+++|+..++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999988888665 2 34544 3455566677788889999999888753
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.00075 Score=69.06 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCCCC---CchhhhhH
Q 007134 394 AGLVKQAYEYIQNM---------LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ-----LEPKHS---GDYVLLSN 455 (616)
Q Consensus 394 ~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 455 (616)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 133443 5788888888888888888888888753 455544 34678899
Q ss_pred HhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 007134 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 514 (616)
+|..+|++++|..++++..+--.+ .-...||...++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999998887652111 11246888777776553
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.04 E-value=0.0061 Score=64.90 Aligned_cols=150 Identities=13% Similarity=0.024 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCC----------hHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGM----------VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
....++|++.++++.+. .|+. ..|+.--.++.+.|+ ++++...++.+.+. -+.+...|+.-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34567889999999984 5654 445555555555666 89999999999873 344577888888888
Q ss_pred HhcC--CHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc------
Q 007134 392 GRAG--LVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHG-HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE------ 460 (616)
Q Consensus 392 ~~~g--~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~------ 460 (616)
.+.| +++++++.++++. ..| |...|+.-..+....| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 7799999999883 445 7889999888888999 899999999999999999999999888887764
Q ss_pred --------ccchHHHHHHHHHhhC
Q 007134 461 --------QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 461 --------g~~~~a~~~~~~m~~~ 476 (616)
++++++.+.++...+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 6678888888777653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.011 Score=49.76 Aligned_cols=110 Identities=9% Similarity=-0.107 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHH
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQ 399 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 399 (616)
+++++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777666 33333 555566666677777777776653 345556666666655 566666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 007134 400 AYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQL 442 (616)
Q Consensus 400 A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~ 442 (616)
|.+.|++.-..-+...+..|...|.. .++.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666554322344555555555555 55566666666655544
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.00034 Score=59.98 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL----------VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 426 (616)
+.+++|.+.++...+. -+.+...|..+..++.+.|+ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 12234555555555555444 35777777665 3556 456777788887766
Q ss_pred -----------CCcHHHHHHHHHHHhcCCCCC
Q 007134 427 -----------GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 427 -----------g~~~~a~~~~~~~~~~~p~~~ 447 (616)
|++++|+..|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 489999999999999999854
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.98 E-value=0.0037 Score=52.72 Aligned_cols=112 Identities=7% Similarity=-0.067 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEI 434 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~ 434 (616)
++.++|..+|+...+. + .|+ .. |...|...+.+++|.+.|++.-..-+...+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998874 3 233 33 777888888999999999887544578888888888888 889999999
Q ss_pred HHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHhhCCC
Q 007134 435 ARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 435 ~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 478 (616)
.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999876 457788999999998 8999999999999988764
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.93 E-value=0.0015 Score=52.87 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=56.5
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
|...|+...+ .-+.+...+..+...|.+.|++++|+..|++.. ..| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555543 222346677777777888888888888776652 344 566788888888888888888888888887
Q ss_pred cCCC
Q 007134 442 LEPK 445 (616)
Q Consensus 442 ~~p~ 445 (616)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7765
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.92 E-value=0.0016 Score=49.89 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+...|..+...+...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999999999989999999999999999999999988663
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.12 Score=57.60 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCcc
Q 007134 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 226 (616)
..++..+.+.|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 445555555666665554432 11 111334567788888888877663 4567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.|.+.|.++.. |..+...+...++.+...++-......|. ++.-..+|.+.|++++|.++|.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887743 33444445556666665555554444441 233344566677777766665443
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.53 E-value=0.01 Score=46.65 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
..|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444321 1122334444444444444444444444443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.52 E-value=0.029 Score=55.17 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=71.4
Q ss_pred CCChhhHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHh----cCC-C---hHHHHHHHHHhH
Q 007134 307 KRNAVSWSTLVVGLAV--NG---FGKEALELFKEMEIGGFVPGE-VTFVGVLYACS----HCG-M---VDEGFSYFKRMK 372 (616)
Q Consensus 307 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~----~~g-~---~~~a~~~~~~m~ 372 (616)
..+..+|...+.+... .+ ...+|..+|++..+ ..|+- ..+..+..++. ..+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466666666655432 22 24678888888877 35653 33333322222 000 0 001111111111
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.....+.+...|..+...+...|++++|...+++.. ..|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 101223445566666555555677777776666652 44666666666666666677777777777777666653
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.46 E-value=0.011 Score=60.54 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=65.6
Q ss_pred cCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRTLL 420 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll 420 (616)
+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35677777777776654321 2222 456778888888888888888887665 245654 6889999
Q ss_pred HHHHHcCCcHHHHHHHHHHHh-----cCCCCC
Q 007134 421 GACTIHGHSAIAEIARSTLLQ-----LEPKHS 447 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~-----~~p~~~ 447 (616)
..|...|++++|+.+++++++ ++|+.|
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 999999999999999999864 456654
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.39 E-value=0.11 Score=42.41 Aligned_cols=140 Identities=11% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+- .|. ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------HhhhcHHHH
Confidence 3467788888888887653 24455666665555555666666666666432 332 245566666
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
...+-.++ .+....+..+......|+-++-.++...++..++.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665554 234455666777888899998888888876666666888889999999999999999999999998875
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.36 E-value=0.11 Score=57.74 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=23.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHhCCCccHHHHHH
Q 007134 189 AAFGHVKDACK-VFELMSERDLVAWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 189 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (616)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 45677777776 5543330 112255556666666666666544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.35 E-value=0.018 Score=58.78 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=63.0
Q ss_pred HhcCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRT 418 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 418 (616)
+.+.|++++|..++++..+... +.|+ ..+++.+..+|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4455666666666666553211 1222 445677777777777777777777654 245554 67888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh-----cCCCCCCc
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQ-----LEPKHSGD 449 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 449 (616)
|...|...|++++|+.+++++++ ++|+.|.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 88999999999999999988853 56765543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.012 Score=49.73 Aligned_cols=65 Identities=6% Similarity=-0.109 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-C-CCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 PNAVIWRTLLGACTIHG---HSAIAEIARSTLLQLE-P-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++..+...+..++.+.+ ++++|+.+++.+++.+ | +....+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777777 5668888888888777 6 3456667788888888888888888888765
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.32 E-value=0.014 Score=45.42 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-cHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML-MPP-NAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~-~~p-d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
....+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556778888999988887762 445 556 88888889999999999999999999999987765421 455
Q ss_pred hHHHHHHHHH
Q 007134 464 LNVQEVRRTM 473 (616)
Q Consensus 464 ~~a~~~~~~m 473 (616)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666555443
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.28 E-value=0.005 Score=48.03 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-chhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSG-DYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455678899999999999999999999988 9999999999999999999999998764
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.25 Score=42.83 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=87.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 366 (616)
+...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456788999998888776 4677899999999999999999999988653 3334444555677766555
Q ss_pred HHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 367 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
+-+....+ .-++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 44443331 12455556677789999999999887744433222 24467777777776654
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.62 E-value=0.039 Score=54.20 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=88.9
Q ss_pred cCCHHHHHHHHHHHh--cC---CChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHH----hcC-------CHHHHHHHH
Q 007134 342 VPGEVTFVGVLYACS--HC---GMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLG----RAG-------LVKQAYEYI 404 (616)
Q Consensus 342 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~~ 404 (616)
+.+...|...+.+.. .. ....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..+.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 344555666665443 22 345789999999885 3466 444443333332 111 112233322
Q ss_pred HhCCC-CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 405 QNMLM-PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 405 ~~m~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..+.. ..+..+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33332 347788888888788889999999999999999975 567789999999999999999999888664
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=1.1 Score=38.86 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888887776 3567788888888888888888888887643 3344445555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+-+.....| -+|.-...+.-.|+++++.++|.+..+.... ......+|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 555544444 1233344455567777777777655432111 11112255666666666554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.35 E-value=0.042 Score=51.80 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHhC-CCCCc---HHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhc-ccchHH
Q 007134 398 KQAYEYIQNM-LMPPN---AVIWRTLLGACTI-----HGHSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYE-QRWLNV 466 (616)
Q Consensus 398 ~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~a 466 (616)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ...++..+..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4444444443 24555 4577777777777 489999999999999999974 88888888888874 889999
Q ss_pred HHHHHHHhhCCCccCC
Q 007134 467 QEVRRTMVKERVKKTP 482 (616)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (616)
.+.+++....+....|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999888876655334
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.14 E-value=0.092 Score=41.39 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML---------MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..-+-.|...+.+.|+++.|...|+... -.+...++..|..++.+.|+++.|...++++++++|+++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455566666666666666664431 12356788889999999999999999999999999987554
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.13 E-value=0.11 Score=40.13 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=52.2
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 379 PKIEHFGCMVDLLGRAGL---VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777755444 68888888776 3556 5678888888889999999999999999999888
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.62 E-value=0.0035 Score=62.92 Aligned_cols=239 Identities=12% Similarity=0.020 Sum_probs=148.0
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 153 (616)
+.+.+|..|..++...+ .+.+|..-| +...|+..|..+|.+..+.|.+++-+..+.-.++.. -+...=+.++-+|
T Consensus 52 n~p~VWs~LgkAqL~~~-~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKG-MVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSS-SCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccC-chHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 45567777777777776 777777766 334566667778888888888887777765444432 2334445677778
Q ss_pred HcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC------------------------CCh
Q 007134 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE------------------------RDL 209 (616)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------------------~~~ 209 (616)
++.+++.+-.+.. -.|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8777765543332 134444445566777777777777777766542 356
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007134 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289 (616)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 289 (616)
.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++.-|...|.+++-..+++.-... -.....+++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHH
Confidence 6788888888888877766554433331 222 1223444566667777766666654421 134667788888788
Q ss_pred HhcCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHHcCCHHHHHH
Q 007134 290 SKCGIIIAAQRVFREMRK----R-------NAVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 331 (616)
+|- +.++-.+.++..-. | ....|..++-.|.+..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 775 33444444433221 1 45578888888888888887753
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.11 E-value=0.18 Score=42.55 Aligned_cols=84 Identities=14% Similarity=-0.093 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--cHHHHHHHHHHHHHcCCcHHHHH
Q 007134 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG---LVKQAYEYIQNML-MP-P--NAVIWRTLLGACTIHGHSAIAEI 434 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--d~~~~~~ll~a~~~~g~~~~a~~ 434 (616)
..+++.|.+..+ .-.++..+.-.+.-++.+.+ +.++++.++++.- .. | +...+-.|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444544433 12255666666666666666 4456666665552 22 4 23455667778899999999999
Q ss_pred HHHHHHhcCCCCC
Q 007134 435 ARSTLLQLEPKHS 447 (616)
Q Consensus 435 ~~~~~~~~~p~~~ 447 (616)
.++.+++.+|++.
T Consensus 93 y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCH
Confidence 9999999999854
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.86 E-value=0.13 Score=41.78 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhcC-C-CCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSA---IAEIARSTLLQLE-P-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..+--.+..++.+..+.. +++.+++.+++.+ | ..-.....|+-++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333444444444332 2555555554433 2 1122333455555555555555555555543
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.68 E-value=8.5 Score=40.85 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhCC-CcCCHH--HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 324 GFGKEALELFKEMEIGG-FVPGEV--TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.+.+.|..+|....... ..+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886543 222221 2223333444455355666666665432 23333333344445578999999
Q ss_pred HHHHHhCCCCC-c-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 401 YEYIQNMLMPP-N-AVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 401 ~~~~~~m~~~p-d-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
...|+.|+..+ + ..-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999997443 2 22222344577788999999999999875
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.15 E-value=1.1 Score=37.05 Aligned_cols=91 Identities=5% Similarity=-0.037 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCcee
Q 007134 410 PPNAVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 485 (616)
.|+..+--.+..++.+..+ ..+++.+++.+++..|.. -.....|+-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4555555555566665553 557888888888777753 333457788888889999998888888652
Q ss_pred eEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007134 486 LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 526 (616)
.|...++...-..+.++|.+.|++
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 233345555555556777777774
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.46 E-value=0.43 Score=44.95 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCc--HHHHHHHHHHHHH-cCCc
Q 007134 362 DEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRA-----GLVKQAYEYIQNM-LMPPN--AVIWRTLLGACTI-HGHS 429 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~-~g~~ 429 (616)
..|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 34455 44667777777773 7888888888766 35562 5666666776666 4888
Q ss_pred HHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 430 AIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
+++.+.+++++...|.. |.. .+. ..++-++|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~--~la----n~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHN--KLL----VILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSC--HHH----HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCCh--hHH----HHHHHHHHHHHHHHh
Confidence 88888888888877763 432 233 334445666665544
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.38 E-value=0.38 Score=37.71 Aligned_cols=64 Identities=9% Similarity=-0.104 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------CCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLE-------PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455678889999999999999999997643 22345577899999999999999999998865
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.05 E-value=5.6 Score=32.54 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
+||++......|-.+. .+....+.-+..+...|+-++-.+++.++.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555554442 2334445556667777777777777777533 2456666667777777777777777777777
Q ss_pred hHHh
Q 007134 371 MKDE 374 (616)
Q Consensus 371 m~~~ 374 (616)
+.++
T Consensus 151 AC~k 154 (172)
T 1wy6_A 151 ACKK 154 (172)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7664
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.94 E-value=0.86 Score=49.44 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=48.9
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.-|...|+++.|+.+.+++...-|.+..++..|+.+|...|+|+.|.-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999998884
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.87 E-value=0.0034 Score=63.00 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
.+.+|+.|..++.+.|++.+|.+.| +...|...|..+|.+..+.|.+++-++.+.-.++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456777777777777777777665 333455667777777777888877777665555443223 233456777777
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhh
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK------------------------RNAVS 312 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 312 (616)
.+++.+-.++. -.|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77765543332 135555556667777777777777777766541 26788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC-CChhhHHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM-PKIEHFGCMVDLL 391 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~ 391 (616)
|..+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-+.+++.-. |.+ .....++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99998899888877666544333331 2221 1223444556666666655555443 222 2244455444444
Q ss_pred Hh
Q 007134 392 GR 393 (616)
Q Consensus 392 ~~ 393 (616)
++
T Consensus 274 sK 275 (624)
T 3lvg_A 274 SK 275 (624)
T ss_dssp HS
T ss_pred Hh
Confidence 43
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.30 E-value=13 Score=35.50 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHH----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT----LFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +.+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999886542 334556677655544 3455566788888888887777765
Q ss_pred hcCchH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CC
Q 007134 256 ELGALA-LGRRAHTYVW----KVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN---GF 325 (616)
Q Consensus 256 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 325 (616)
....-+ .-.++...++ +.| -.-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543211 1233333343 333 2247788899999999999999999988633223455565555544443 43
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
..++ |...-.++| -+...|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332 112222233 234578899998888877654
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.36 E-value=1.3 Score=36.09 Aligned_cols=65 Identities=3% Similarity=-0.143 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 PNAVIWRTLLGACTIHG---HSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|...+--.+..++.+.. +..+|+.+++.+++.+|.. -.....|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444334444444444 3446666676666666532 33344666677777777777777776654
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.99 E-value=3.1 Score=33.65 Aligned_cols=71 Identities=14% Similarity=-0.090 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQ---AYEYIQNML-MP-P--NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~-~~-p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
++..+--.+.-++.+..+..+ ++.++++.- .. | .....-.|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 555555555566666665554 666666552 22 3 12334456668899999999999999999999986543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.96 E-value=5.1 Score=33.44 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCCChhHHHHHHHHHHhcCCc------hHHHHHHHHHHHCCCCCCcc----hHHHHHHH---HHcCCCcHHHHHHHHHHH
Q 007134 104 QDPNIFTWNTMIRGYAESANP------LLAVELYSKMHVSGIKPDTH----TYPFLLKA---ISKLADVRMGEQTHSVAI 170 (616)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 170 (616)
...|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...+|.+.|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345778888888888888888 7778888877764 566532 12211111 112256777777777776
Q ss_pred HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007134 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 171 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 203 (616)
+..-.- ..+|......=.+.|+++.|++++..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 552222 44454444444555555555555544
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.71 E-value=3 Score=32.03 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (616)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++ +-.-+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH---------HHhhHH
Confidence 4557777778888888999999999999999999999999999999987543 44556877764 334555
Q ss_pred HhCC
Q 007134 405 QNML 408 (616)
Q Consensus 405 ~~m~ 408 (616)
+++|
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5555
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.47 E-value=21 Score=34.32 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL----FREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666778999999999987643 23345556665554444 355566778888888777777776
Q ss_pred hcCchHH-HHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHH
Q 007134 256 ELGALAL-GRRAHTYVW----KVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328 (616)
Q Consensus 256 ~~~~~~~-a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 328 (616)
....-+- =..+...++ +.| -.-|......+...|.+.|++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 5553221 122333333 333 33467788889999999999999999884222222356655554444433211
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 329 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.+|.+.-.++| -|...+++..|..+|+...+
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 22223333333 34457888888887777654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.29 E-value=2 Score=35.80 Aligned_cols=54 Identities=6% Similarity=-0.160 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
.+|.++|.++|+.++++...-+..+...+..-.++|+.+.|++++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378888888888887763333233334444456788888888888887765543
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.59 E-value=23 Score=33.79 Aligned_cols=168 Identities=9% Similarity=0.076 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCcchHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL----YSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
..+.++..-|.+.+ ++++|..++..- ...+.+.|+...|-++ .+...+.++++|......++..
T Consensus 34 Q~~Rtl~~Ry~~~~-~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSK-SYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45667778888888 899998886432 3344556776666554 4444556788888877777777
Q ss_pred HHcCCCcH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---
Q 007134 153 ISKLADVR-MGEQTHSVAI----RNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN--- 222 (616)
Q Consensus 153 ~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--- 222 (616)
+.....-+ .=..+...++ +.| ..-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 65533111 1233333343 333 2347788899999999999999999988533222455666555554443
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
|...++ |.+.-..++. +...+++..|..+++...
T Consensus 182 ~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred CCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 433332 1111222232 335677777777776554
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.96 E-value=25 Score=33.75 Aligned_cols=168 Identities=10% Similarity=0.026 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCcchHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY----SKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll~~ 152 (616)
..+.++..-|.+.+ ++++|+.++-. -...+.+.|+...|-++- +-..+.++++|..+...++..
T Consensus 36 Q~~RTi~~Ry~~~k-~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQG-NWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35666777788888 89999887533 133455667766655554 444556788888888778777
Q ss_pred HHcCCCcHH-HHHHHHHH----HHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCc
Q 007134 153 ISKLADVRM-GEQTHSVA----IRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225 (616)
Q Consensus 153 ~~~~~~~~~-a~~~~~~~----~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 225 (616)
+.....-+- =..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|=.-.++....+..|+.-+.+.+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 766553221 12233333 3334 3446778888889999999999999888432222235665665555554432
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
.++ |.+.-..+|. |...+++..|..+++...
T Consensus 184 ~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 184 HTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 222 2222223333 344566666766655443
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.82 E-value=9.7 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.025 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777776653 444444555678889999999999999999999999888664 5677777777777777
Q ss_pred HCCCCCCHHHHH
Q 007134 237 SEGVEPDGYTMV 248 (616)
Q Consensus 237 ~~g~~p~~~t~~ 248 (616)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.05 E-value=9.2 Score=29.17 Aligned_cols=87 Identities=10% Similarity=-0.055 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456777777777776653 44444455567888999999999999999999999988765 47788888888777887
Q ss_pred HCCCCCCHHHHH
Q 007134 237 SEGVEPDGYTMV 248 (616)
Q Consensus 237 ~~g~~p~~~t~~ 248 (616)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45544443
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.52 E-value=8.9 Score=41.60 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHhhCCCCCh--hH--HHHHHHHHHhcCC-chHHHHHHHHHHHC------CCCCCcc---
Q 007134 80 KYLIYAIVSLSFP-MSYAHNIFSHVQDPNI--FT--WNTMIRGYAESAN-PLLAVELYSKMHVS------GIKPDTH--- 144 (616)
Q Consensus 80 ~~li~~y~~~~~~-~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~pd~~--- 144 (616)
..|+..+.-.+ + .+.|..+|+++...+. .+ ..++|..+.+.++ --+|++++.+.++. ...+...
T Consensus 252 ~~Ll~~~~~t~-~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 252 YSLKSFIAITP-SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHTCG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHcccc-cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444455 4 5779989987764332 22 2233333333332 23566666555421 1222211
Q ss_pred --------hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 145 --------TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 145 --------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.+..-.+.|...|+++.|+++-+.++..- +.+-.+|..|...|.+.|+++.|+-.++.+|
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345667899999999999988874 5667789999999999999999999999887
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.62 E-value=14 Score=28.16 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777766653 33333333445677899999999999999999999988765 467888888888878887
Q ss_pred CCCcCCHHHHHH
Q 007134 339 GGFVPGEVTFVG 350 (616)
Q Consensus 339 ~g~~p~~~t~~~ 350 (616)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.08 E-value=6.5 Score=31.94 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (616)
+.-+..+-++.+....+.|+.....+.|.+|.+.+++..|..+|+.++.+. .+....|..+++ +-.-+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH---------HHhhHH
Confidence 344666777777778899999999999999999999999999999998754 344667877764 445556
Q ss_pred HhCCC
Q 007134 405 QNMLM 409 (616)
Q Consensus 405 ~~m~~ 409 (616)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66653
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.03 E-value=15 Score=28.06 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766653 33333333445677899999999999999999999988765 46688888888887887
Q ss_pred hCCCcCCHHHHHH
Q 007134 338 IGGFVPGEVTFVG 350 (616)
Q Consensus 338 ~~g~~p~~~t~~~ 350 (616)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.51 E-value=57 Score=36.28 Aligned_cols=295 Identities=9% Similarity=0.028 Sum_probs=145.7
Q ss_pred HHHHHHHHhcCCchHH-HHHH-HHHHHCCCCCCcchHHHH-HHHHHcCCCcHHHHHHHHHHHHhC--CCCcHHHHHHHHH
Q 007134 112 NTMIRGYAESANPLLA-VELY-SKMHVSGIKPDTHTYPFL-LKAISKLADVRMGEQTHSVAIRNG--FESLVFVQNSLVH 186 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A-~~l~-~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~ 186 (616)
.++..++...|-..+. +... .++-+. + +..-+.++ --+....|+.+++..++...+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3567788888865443 2222 222221 1 11122222 224556788888877776554321 1222334444555
Q ss_pred HHHhcCCHHHHHHHHhhcCC-CC----------hhHHHHHHHHHHhCCCc-cHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 007134 187 MYAAFGHVKDACKVFELMSE-RD----------LVAWNSVINGFASNGKP-NEALTLFREMASEGVEPDGYTMV--SLFS 252 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~--~ll~ 252 (616)
+...+|.-+++..++..... .+ +..-.++.-|++-.|.- +++.+.+..+....- +...... ++..
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 56666665566665554322 22 11122333344444432 466777777665321 1111112 2222
Q ss_pred HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHhcCC-CChh-hHH---HHHHHHHHcCC
Q 007134 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS--KCGIIIAAQRVFREMRK-RNAV-SWS---TLVVGLAVNGF 325 (616)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~m~~-~~~~-~~~---~li~~~~~~g~ 325 (616)
.+...|+.+....++..+.+.. +..+...+.-+.+ -.|+.+.+..+.+.+.. .|.. -|. ++..+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3345567677777777666532 2233333333333 56776666666666542 2322 233 23445667778
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH-HHHHHHH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV-KQAYEYI 404 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 404 (616)
.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 766666888777642 12222222222234445666666777766654 2345555444555455545443 5677777
Q ss_pred HhCCCCCcHHHH
Q 007134 405 QNMLMPPNAVIW 416 (616)
Q Consensus 405 ~~m~~~pd~~~~ 416 (616)
..+...+|..+-
T Consensus 653 ~~L~~D~d~~Vr 664 (963)
T 4ady_A 653 DPLTKDPVDFVR 664 (963)
T ss_dssp HHHHTCSSHHHH
T ss_pred HHHccCCCHHHH
Confidence 777545554433
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.49 E-value=48 Score=33.47 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=118.1
Q ss_pred CCccHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hCCCCchhH--HHHHHHHHHhcCC
Q 007134 223 GKPNEALTLFREMASE-----GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNV--NNALLDFYSKCGI 294 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~y~~~g~ 294 (616)
|++++|++.+..+.+. +..........++..|...++++.....+..+.+ +|......+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788999888776542 2444566788899999999999988877766654 343222211 1222233333333
Q ss_pred HH--HHHHHHHhcCCC-C---------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcCCH---HHHHHHHHHHhc
Q 007134 295 II--AAQRVFREMRKR-N---------AVSWSTLVVGLAVNGFGKEALELFKEMEIG--GFVPGE---VTFVGVLYACSH 357 (616)
Q Consensus 295 ~~--~A~~~f~~m~~~-~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~~ 357 (616)
.+ .-..+.+..... + ......|...|...|++.+|.+++.++... |..+.. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 223333333211 1 112345778888999999999999998743 332221 345666778899
Q ss_pred CCChHHHHHHHHHhHHh-hCCCC--C--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 358 CGMVDEGFSYFKRMKDE-YGIMP--K--IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~-~~~~p--~--~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.+++..|..++..+... ....+ + ...|.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999987532 12222 2 345778888888999999998877664
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.67 E-value=15 Score=31.19 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML 408 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (616)
+.---+..+|.+.|+.++|+.+++.+|
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345566666777777777777665
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.35 E-value=40 Score=38.90 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------ChhhHHHHHHHHHHcCCHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKR--------------------------NAVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~ 331 (616)
+....-.+..+|..+|++++|.+.|.+.... -..-|..++..+-++|.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333344556667777777777777654310 00124445555555666666655
Q ss_pred HHHHHHhCCCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH
Q 007134 332 LFKEMEIGGFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397 (616)
Q Consensus 332 l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (616)
+-+..++....-+. ..|..+..++...|++++|...+-.+... . --......||..++..|..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCCh
Confidence 55544432111111 13445555566666666665555554321 1 1123344444444444443
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.07 E-value=44 Score=38.49 Aligned_cols=63 Identities=3% Similarity=-0.251 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-----chhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG-----DYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
-|.-++..+.++|.++.+.+..+.+++..+.+.. .|..+...+...|++++|...+-.+.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 3455666667777777777777777654433221 24445566667777777777776665543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.65 E-value=3.3 Score=41.28 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
..++.++...|+.+++...++.++..+|-+...+..+..+|.+.|+..+|.+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344555666666666666666666677666666667777777777777766665543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.79 E-value=17 Score=36.08 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH----hhCCCCChh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD----EYGIMPKIE 382 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 382 (616)
.++..+...|++++|+..+..+.... +-++..+..++.++.+.|+..+|.+.|+...+ +.|+.|...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556666777777777777665532 33556777777777777777777777766543 346666544
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.23 E-value=1.1e+02 Score=34.10 Aligned_cols=251 Identities=11% Similarity=-0.017 Sum_probs=110.0
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCchHHHHHHHHHHHHhCC-------CCchhHHHHH--H
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA--CAELGALALGRRAHTYVWKVGL-------SDNVNVNNAL--L 286 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~l--i 286 (616)
|....|+.++++.++......+...+..+-...+-+ ....|..+++..++...+...- .+.+....++ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455667777777777665542211233333222222 3344444456665555444321 0112222222 2
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCChhh--HHHHHHH--HHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCCh
Q 007134 287 DFYSKCGIIIAAQRVFREM-RKRNAVS--WSTLVVG--LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMV 361 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m-~~~~~~~--~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 361 (616)
-+|.-.|+- ++.+.+..+ ...+..+ ..++.-| +.-.|+.+-...+++.+.+.. .-+..-+..+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 223333443 333333333 3333221 1222222 334566666666666655431 11112222222334466777
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHH--HHHHcCCcHHHHHHHH
Q 007134 362 DEGFSYFKRMKDEYGIMPKIEHFGC--MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG--ACTIHGHSAIAEIARS 437 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~--a~~~~g~~~~a~~~~~ 437 (616)
+.+..+.+.+... ..|.+..-.+ +.-+|+..|+.....+++..+.-.++..+-...+- +....|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777777777652 2222222222 23345667776666667766643333322222222 3334566655555554
Q ss_pred HHHhcCCCCCCchh----hhhHHhHhcccchHHHHHHHHHhh
Q 007134 438 TLLQLEPKHSGDYV----LLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 438 ~~~~~~p~~~~~~~----~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.+.. ++..-. .|+.+++..++ .++.+++..+..
T Consensus 619 ~L~~~~--d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH--NAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS--CHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT
T ss_pred HHHhcC--CHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc
Confidence 443211 111111 22322222232 567777777653
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.65 E-value=43 Score=29.25 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 007134 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223 (616)
Q Consensus 176 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 223 (616)
++..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 344444444455555444333333333333333333333333333333
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.91 E-value=17 Score=27.86 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (616)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++++-+.... .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455556666667788888888888888888888888888888776442 22244555554
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.37 E-value=43 Score=28.41 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=59.3
Q ss_pred HHHHHhCCCCHHHHHHHHhhCC-----CCCh-------hHHHHHHHHHHhcCCchHHHHHHHHHHHC--CCCCCcchHHH
Q 007134 83 IYAIVSLSFPMSYAHNIFSHVQ-----DPNI-------FTWNTMIRGYAESANPLLAVELYSKMHVS--GIKPDTHTYPF 148 (616)
Q Consensus 83 i~~y~~~~~~~~~A~~~f~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ 148 (616)
+......+ .++.|+-+-+.+. .|++ .+...+..++...|++.+|...|++.++. .+.-+..+..+
T Consensus 27 ik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 27 VRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33444555 6888777665432 2332 24566677788888888888888886542 11111111111
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
+- ....... ......+..+---+..+|.+.|+.++|+.+++.++.
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0000000 011234555656677888899999999999988874
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.95 E-value=30 Score=32.02 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=61.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcC
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAG 395 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g 395 (616)
..+.|..++|++....-++.. +-|...-..++.-++-.|+++.|.+-++...+- .|+ ...|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH-----
Confidence 445666777776666665542 234444445556666677777777666665432 233 2233333322
Q ss_pred CHHHHH-HHHHh--CC---CCCcHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 396 LVKQAY-EYIQN--ML---MPPNAVIWRTLLGAC--TIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 396 ~~~~A~-~~~~~--m~---~~pd~~~~~~ll~a~--~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
+... ++|.. .| ..|. .-...|+.+. ...|+.++|..+-.++++.-|..++
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HHHHHHHHcCCCCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 22211 11 1222 2233444444 4458888888888888877776554
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.06 E-value=57 Score=28.61 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred HHHHHHHHhCC-CCCcH---HHHHHHHHHHHHcCCcHHHHHHHHHHH--hcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 398 KQAYEYIQNML-MPPNA---VIWRTLLGACTIHGHSAIAEIARSTLL--QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 398 ~~A~~~~~~m~-~~pd~---~~~~~ll~a~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
+.+...|...+ .+-|. ..|-.++..| ..++...+..+|..+. +++-..+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454443 34454 4565555544 2344668888888885 4455556668888999999999999999999
Q ss_pred HHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007134 472 TMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526 (616)
Q Consensus 472 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 526 (616)
.-.+++-.| .+.+.....+...+|.+.+++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 887766544 234455555667788887773
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.48 E-value=40 Score=27.36 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..+-.|.-++.+.|+++.|.+..+.+++.+|++.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3445566678888888888888888888888854
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.30 E-value=1e+02 Score=32.84 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=18.0
Q ss_pred HHhcCCHHHHHHHHHhCCCCCc
Q 007134 391 LGRAGLVKQAYEYIQNMLMPPN 412 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~pd 412 (616)
+...|++++|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999876663
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.57 E-value=53 Score=29.94 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=21.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVN--VNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
.+.......+.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344333445555555555444321 11223334445555555555544
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.83 E-value=74 Score=27.37 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF 325 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 325 (616)
+..+-...+.+.++.|+.+....+.+.+..+|...-...+.++...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333333444444444443322223333333343333334444444443
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.07 E-value=71 Score=26.26 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=41.4
Q ss_pred CChhhHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC-cH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 379 PKIEHFGCMVDLLGRAGLVK---QAYEYIQNML-MPP-NA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p-d~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
|+..+--.+.-++.++.+.+ +++.+++++- ..| +. .-.-.|.-++.+.|++++|.+..+.+++.+|++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44444444444444444432 3444444431 123 22 2334456688999999999999999999999854
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=58.43 E-value=44 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 228 ALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
..+-++.+....+.|+.......|.+|.+.+++..|.++++-+.... .+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 44555666667788999999999999999999999999988776542 233445655543
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.05 E-value=72 Score=25.66 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--ccHHHHHHHHHHHCCCCCCH
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNGK--PNEALTLFREMASEGVEPDG 244 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 244 (616)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567888888999999999999987652 2344455555555432 35677788888777754433
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.70 E-value=1.7e+02 Score=28.74 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=28.0
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007134 149 LLKAISKLADVRMGEQTHSVAIRNGFES-----LVFVQNSLVHMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~ 203 (616)
+...+...|++.+|.+++..+.+.=-.. -..++-.-+.+|...|++..+...+..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4455556666666655555554421011 123444555566666666666555543
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.35 E-value=43 Score=33.62 Aligned_cols=95 Identities=9% Similarity=-0.075 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCcCCHHH--HH
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRKR------NAVSWSTLVVGLAVNGFGKEALELFKEMEI---GGFVPGEVT--FV 349 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t--~~ 349 (616)
+...+.+.|.++|+++.|.+.|.++... -+..+-.++..+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556677777777777777777776531 234566667777778888888877777643 232333221 11
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 350 GVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 350 ~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
.-...+...+++..|...|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11123456788888888887776653
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.23 E-value=14 Score=34.13 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 389 DLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..+.+.|++++|++....- .-.| |...-..|+.-++..|++++|..-++...+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4567889999998877544 4566 7777788889999999999999999999999987
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.13 E-value=81 Score=28.63 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHh
Q 007134 289 YSKCGIIIAAQRVFRE 304 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~ 304 (616)
.+..|+.+-...+++.
T Consensus 112 A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555444444443
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.90 E-value=1.6e+02 Score=27.89 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=44.1
Q ss_pred HhCCCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 405 QNMLMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 405 ~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
....+.|. ..+..+-++.+.+++++..|..+.++++++.|.. ...++|.++...-.+.+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMA 257 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 33356663 3577778888999999999999999999999851 24566888887776544
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.61 E-value=2.1e+02 Score=28.59 Aligned_cols=193 Identities=11% Similarity=0.017 Sum_probs=111.5
Q ss_pred CCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hhc
Q 007134 192 GHVKDACKVFELMSE-----R----DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEPDGYTMVSLFSAC----AEL 257 (616)
Q Consensus 192 g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~----~~~ 257 (616)
|++++|.+.+-.+.+ . .......++..+...|+++...+.+..+... |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678888877654432 2 2345677888999999999988877666443 32222 223344333 223
Q ss_pred CchHHHHHHHHHHHHh------C-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-----ChhhHHHHHH
Q 007134 258 GALALGRRAHTYVWKV------G-LSD---NVNVNNALLDFYSKCGIIIAAQRVFREMRK----R-----NAVSWSTLVV 318 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~------g-~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~-----~~~~~~~li~ 318 (616)
...+.... ...... | +-. ...+...|...|...|++.+|.+++.++.. . -+..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33322111 112211 1 111 223446788899999999999999988752 1 1345677788
Q ss_pred HHHHcCCHHHHHHHHHHHHh----CCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH
Q 007134 319 GLAVNGFGKEALELFKEMEI----GGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 392 (616)
.|...+++.+|..++++... ....|+. .-+...+..+...+++.+|.+. |..+...+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccc
Confidence 89999999999999988743 2222221 2234444455556666655443 334455555
Q ss_pred hcCCHHHHHHHH
Q 007134 393 RAGLVKQAYEYI 404 (616)
Q Consensus 393 ~~g~~~~A~~~~ 404 (616)
..++.......+
T Consensus 250 ~~~d~~~~~~~L 261 (445)
T 4b4t_P 250 IKSDEAKWKPVL 261 (445)
T ss_dssp HHSCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 556554444333
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.50 E-value=88 Score=31.27 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
...+..-+.+.|+++.|.+.|.++... -..+. +..+-.++..+...+++..+...+++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444455555555555555555442 11111 334444455555555555555444443
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.49 E-value=67 Score=26.76 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--ccHHHHHHHHHHHCCCCCC
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNGK--PNEALTLFREMASEGVEPD 243 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 243 (616)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888899999999999887652 2344455555555322 3457777777877765443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.10 E-value=97 Score=27.29 Aligned_cols=17 Identities=0% Similarity=-0.154 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHhhc
Q 007134 188 YAAFGHVKDACKVFELM 204 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~ 204 (616)
.++.|+.+-+..+++..
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34555555555555543
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.36 E-value=1.5e+02 Score=25.47 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 125 LLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 125 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
.+++..+.+++. .+|...-...+.++...++.+....+. .+++ .+|..+-...+..+.+.|+.+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 444555544443 345555556666666666543333322 2222 345666666666666666544333444444
Q ss_pred CCCChhHHHHHHHHHHhCCC
Q 007134 205 SERDLVAWNSVINGFASNGK 224 (616)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~ 224 (616)
..+|...-...+.++.+.++
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCc
Confidence 44554444444555555444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.85 E-value=76 Score=25.51 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCcCC
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGF--GKEALELFKEMEIGGFVPG 344 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 344 (616)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777777888888888888876552 2233334444444332 3456667777766654443
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.02 E-value=49 Score=29.93 Aligned_cols=89 Identities=11% Similarity=-0.025 Sum_probs=44.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcch-------HHHHHHHHH--cCCCcHHHHHHHHHHHHhCC---------CCc
Q 007134 116 RGYAESANPLLAVELYSKMHVSGIKPDTHT-------YPFLLKAIS--KLADVRMGEQTHSVAIRNGF---------ESL 177 (616)
Q Consensus 116 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~ 177 (616)
...++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+-++.+++.-...+. ...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 334566777777777776666665555332 233333332 55777666666655433110 000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
.....+.+...+..|+.+-+.-+++.-
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 001112333445667777666666643
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.86 E-value=3.4e+02 Score=28.49 Aligned_cols=395 Identities=9% Similarity=-0.039 Sum_probs=200.4
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 007134 60 KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139 (616)
Q Consensus 60 ~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 139 (616)
.+|-.++.+..-.|....+-+.-+..+++.+ +...-...|.. +..+...--....+....|+..+|....+.+-..|
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~-~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~- 132 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE-DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG- 132 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCC-CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-
Confidence 3777777775422333345566677777877 89988887776 43455555556777888899888888888887665
Q ss_pred CCCcchHHHHHHHHHcCCCcHH--HHHHHHHHHHhC-----------CCCcH-HHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 140 KPDTHTYPFLLKAISKLADVRM--GEQTHSVAIRNG-----------FESLV-FVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 140 ~pd~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.........++..+.+.|.+.. ..+=...+...| ++++. .....++..+.+-..+ .......
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~- 208 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT- 208 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-
Confidence 3445667777777776665533 222222222222 11111 1112222222221111 1111111
Q ss_pred CCChh---HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCchHHHHHHHHHHHHhCCCCc
Q 007134 206 ERDLV---AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA----ELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 206 ~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
.++.. ....-+.-+.+. +.+.|..+|....... ..+......+-...+ ..+...++...+....... .+
T Consensus 209 ~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 11111 111123333333 6788888888876543 223333332332222 2332445555555544332 22
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRN--AVSW-STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
.....-.+....+.|+++.|.+.|+.|.... ..-| -=+..++...|+.++|..+|+++... . +|-.++. .
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a 357 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-A 357 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-H
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-H
Confidence 2233344444556789999999999887642 1111 11344667788999999988888642 1 3333332 2
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCC-hh-----hHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCc
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPK-IE-----HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~ 429 (616)
.+.|..-. +.. ....+. .. .--.-+..+...|...+|...+..+.-..+......+.......|..
T Consensus 358 ~~Lg~~~~-------~~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 358 QRIGEEYE-------LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWW 429 (618)
T ss_dssp HHTTCCCC-------CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCC-------CCC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCh
Confidence 22221100 000 000010 00 11123456778899999987776653233433333444555677888
Q ss_pred HHHHHHHHHHHhcCC---CCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCcc
Q 007134 430 AIAEIARSTLLQLEP---KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 480 (616)
+.+.....+....+. ..|..|...+.-+++.-.++...-.--...|.+..+
T Consensus 430 ~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 430 DLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 887766654322110 113355555555555555555443322234445444
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.56 E-value=1.5e+02 Score=26.03 Aligned_cols=51 Identities=6% Similarity=0.003 Sum_probs=23.3
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhh
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVF--VQNSLVHMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~ 203 (616)
.+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 334455555555555544444333211 111233334555666655555554
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.60 E-value=3.3e+02 Score=27.87 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hhHHH-------HHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-----
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNA-VSWST-------LVVGLAVNGFGKEALELFKEMEIGGFVPGE----- 345 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----- 345 (616)
..+.|.++..|...+.++.|.++..+..-|.. .+.+- +...++-.+++.+|.+.+......- +++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 56778888999999999999999998876532 22222 3445666889999998888876532 1111
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHH
Q 007134 346 ----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLG 421 (616)
Q Consensus 346 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~ 421 (616)
..|..+...+ .|++.. ..+|. .++.......|..|+.++ +.|++++-...++.-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 0111222111 233221 11111 111111234477777765 6677776655554421 1
Q ss_pred HHHHcCCcHHHHHHHHHH----H-hcCCCCCCchhhhhHHhHhcc--cchHHHHHHHHHhhCCCc
Q 007134 422 ACTIHGHSAIAEIARSTL----L-QLEPKHSGDYVLLSNLYAYEQ--RWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~----~-~~~p~~~~~~~~l~~~y~~~g--~~~~a~~~~~~m~~~~~~ 479 (616)
.+.+.|.+....++..-+ + ++... -.-..+.++..+.+ ..++|..+..+|...|.-
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~--YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLT--YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCC--SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 233445544444332222 2 22221 11234555555444 457899999889887754
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.08 E-value=1.4e+02 Score=25.38 Aligned_cols=108 Identities=6% Similarity=-0.058 Sum_probs=46.0
Q ss_pred hCCCCHHHHHHHHhhCC-C---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH--HHHHHHHHcCCCcHH
Q 007134 88 SLSFPMSYAHNIFSHVQ-D---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY--PFLLKAISKLADVRM 161 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~~~~~~~~~~~ 161 (616)
..| +.+....+++.-. . +|..-++.|..+ ++.|+. ++++.+.+.|..++.... .+.+...+..|+.+.
T Consensus 14 ~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 14 NQR-DTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HTT-CHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred Hhc-cHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 444 6777777776543 2 233333333333 344543 344455555655543221 122333334455544
Q ss_pred HHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 162 GEQTHSVAIRNGFESLVF--VQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 162 a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
...+++ ..+..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 88 ~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 88 LAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 333332 122111110 0112233345566666666666554
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.45 E-value=1.8e+02 Score=24.68 Aligned_cols=153 Identities=10% Similarity=0.101 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
|..+....+..+.+.|.-+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333333344444444333333333333344444434444444544443 33344444433 2455555556666666
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
.+..+....+...+ -.++..+-...+.+.++.|+.+....+...+..++...-...+.++...|. .++...+.++
T Consensus 103 ~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 103 IGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp HCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 66543333332222 244555666666666666654433333344444555555555556665554 3455555555
Q ss_pred Hh
Q 007134 337 EI 338 (616)
Q Consensus 337 ~~ 338 (616)
..
T Consensus 178 l~ 179 (201)
T 3ltj_A 178 AE 179 (201)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.45 E-value=1.7e+02 Score=31.10 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 007134 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154 (616)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~ 154 (616)
.|- +|-.+.+.|+.++|.++.++.... +.--...|...+..++
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 453 555666777777777776555321 1111134555555555
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.29 E-value=1e+02 Score=25.68 Aligned_cols=77 Identities=5% Similarity=-0.026 Sum_probs=49.3
Q ss_pred HHHHHHHHhCC-CCCcH---HHHHHHHHHHHHcCCcHHHHHHHHHHHh--cCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 398 KQAYEYIQNML-MPPNA---VIWRTLLGACTIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 398 ~~A~~~~~~m~-~~pd~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
+.+...|...+ .+-|. ..|-..+.. .+.+..+|..+.. ++...+..|...+..+...|++.+|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455554443 34454 344444432 2347888888854 444445567788888889999999999998
Q ss_pred HHhhCCCcc
Q 007134 472 TMVKERVKK 480 (616)
Q Consensus 472 ~m~~~~~~~ 480 (616)
.-.+++-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 887766544
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.93 E-value=1.3e+02 Score=26.26 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC
Q 007134 110 TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176 (616)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 176 (616)
.|-..+..+ ..+...++.++|..|...|+.-... -|......+-..|++.+|.+++..-++.+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444443 1233446677777777666554433 34444555555666666666666666665555
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.31 E-value=1.4e+02 Score=26.82 Aligned_cols=23 Identities=17% Similarity=-0.114 Sum_probs=16.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 007134 114 MIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
-++.+....++++|+++.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666777788888877776654
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.23 E-value=72 Score=26.57 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCcC
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGF--GKEALELFKEMEIGGFVP 343 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 343 (616)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456777777788888888888776552 2233334444443222 345566666666555443
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.83 E-value=2e+02 Score=24.91 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHhh
Q 007134 188 YAAFGHVKDACKVFEL 203 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~ 203 (616)
.++.|+.+-+..+++.
T Consensus 116 A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHhc
Confidence 3444555554444443
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.66 E-value=4e+02 Score=26.80 Aligned_cols=138 Identities=16% Similarity=0.123 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
.+.+.|.+ .+.+.|++--...|..-.+.+...|++++|.++--..+. ++..|.+.+-..-.+.|+..--+.+|.
T Consensus 343 ~n~~lA~~---lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALR---MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHH---HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHH---HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 45554443 345667766666677777888889999999988877665 556666555554455677777788888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.+.+.| +.+..-=.-+.+.-...|+.+..+..+ .+..+..+......+ +..+..-|+.+|.+..
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl---~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL---KEDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH---HHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH---hcCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 877776 444433333344444444444333322 222344443333322 3335555666655544
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.63 E-value=1.4e+02 Score=25.18 Aligned_cols=81 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH--HhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 397 VKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTL--LQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 397 ~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
++.+...|..-. .+-|..-...-+.--...++ ...+|..+ .+++...+..|...+..+...|++.+|.++++.-
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred hhCCCcc
Q 007134 474 VKERVKK 480 (616)
Q Consensus 474 ~~~~~~~ 480 (616)
.+++..|
T Consensus 123 i~~~A~P 129 (164)
T 2wvi_A 123 IQQKAEP 129 (164)
T ss_dssp HHTTCBS
T ss_pred HHcCCCc
No 297
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=31.15 E-value=15 Score=22.45 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=12.5
Q ss_pred cCCccccc-cccccCCCCC
Q 007134 598 DRSRFHHF-KDGHCSCRDY 615 (616)
Q Consensus 598 d~~~~h~~-~~g~csc~~~ 615 (616)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34455544 6899999976
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.88 E-value=1.5e+02 Score=25.02 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHhhc
Q 007134 188 YAAFGHVKDACKVFELM 204 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~ 204 (616)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666543
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.76 E-value=1.2e+02 Score=25.28 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=34.6
Q ss_pred HHHHHhhCCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 007134 96 AHNIFSHVQD-----PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD 142 (616)
Q Consensus 96 A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 142 (616)
+..+|..|.. .-+.-|..-...+-..|++.+|.++|+.-++.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6667765544 3456677888888888999999999888877766653
No 300
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.39 E-value=3.1e+02 Score=26.11 Aligned_cols=61 Identities=10% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCC-CccHHHHHHHHHHHCCCC
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNG-KPNEALTLFREMASEGVE 241 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 241 (616)
...++.=|...|+.++|.+.++++..|. .+....+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 3567888888899999999999887653 122333333333222 134456667777766643
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.74 E-value=1.3e+02 Score=26.29 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 007134 186 HMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~ 203 (616)
...+..|+.+-+..+++.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455565555555543
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.47 E-value=3.6e+02 Score=25.33 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC--hHHHHHHHHHhHHh
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM--VDEGFSYFKRMKDE 374 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~ 374 (616)
.+.++.-|...|+.++|...++++..-...+ ......+..+.-+.++ .+....++..+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 4567888888899999999998886322222 2344455555555433 45566777777653
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.77 E-value=1.6e+02 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCC
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSG 138 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g 138 (616)
.++..+...+.+-.|.++++.+.+.+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33444433334444444444444443
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.61 E-value=1.3e+02 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHh
Q 007134 392 GRAGLVKQAYEYIQN 406 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~ 406 (616)
.+.|+.+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555555544
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.38 E-value=3.3e+02 Score=24.55 Aligned_cols=82 Identities=13% Similarity=0.003 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-FGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
.++..+-...+.+.++.|+.+..-.+...+..++...-...+.++...| ....+...+.++.. .++...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4555555556666666655332223333334444444334444444433 22344444444433 2334333444444
Q ss_pred HhcCCC
Q 007134 355 CSHCGM 360 (616)
Q Consensus 355 ~~~~g~ 360 (616)
+.+.|+
T Consensus 216 L~~~~~ 221 (280)
T 1oyz_A 216 LSYRKD 221 (280)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 444443
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.14 E-value=2.2e+02 Score=23.18 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444444445555566666666665555555555555555555554
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.93 E-value=1.6e+02 Score=30.17 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC--CCC--hhhH-HHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI--MPK--IEHF-GCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~~~-~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..++.+++.|.+.+.++.|..+.....- .. .++ ...| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4566777777778888888777776631 10 011 0111 12344556677777777776654
No 308
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=26.80 E-value=14 Score=25.79 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.1
Q ss_pred eEEEecCCccccccccccCCCC
Q 007134 593 EIVVRDRSRFHHFKDGHCSCRD 614 (616)
Q Consensus 593 ~~~~~d~~~~h~~~~g~csc~~ 614 (616)
.|=+.|.+..|+|+|||-+-+|
T Consensus 9 ~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 9 TYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEBTTSCEEEEETTSCEEEEC
T ss_pred eEecCCCcEEEEEcCCceehhh
Confidence 4778999999999999976443
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.74 E-value=1.6e+02 Score=24.14 Aligned_cols=43 Identities=2% Similarity=-0.029 Sum_probs=17.8
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 150 LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+..+...+..-.|.++++.+.+.+...+..|.---++.+.+.|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333334445555555544443333333333334444444
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.61 E-value=1.4e+02 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=18.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
++...-...+..+.+.|+-++|.++|-
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 444555566677778888888877773
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.96 E-value=4.6e+02 Score=25.45 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=48.8
Q ss_pred HHhCCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHHcCCCcH
Q 007134 86 IVSLSFPMSYAHNIFSHVQDPNI---FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT--YPFLLKAISKLADVR 160 (616)
Q Consensus 86 y~~~~~~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~ 160 (616)
-+..| +++-...+++.-..++. ..++ .+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+
T Consensus 21 Aa~~g-~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 94 (437)
T 1n11_A 21 ASFMG-HLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94 (437)
T ss_dssp HHHHT-CHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHCC-CHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 33455 67777777776444332 2222 333334455543 3333334444433211 112333334445554
Q ss_pred HHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhhc
Q 007134 161 MGEQTHSVAIRNGFESLVF--VQNSLVHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~ 204 (616)
+.+.+++.|..++.. ...+.+...++.|+.+.+..+++.-
T Consensus 95 ----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 95 ----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp ----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred ----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 333444445433311 1112333445666666666666543
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.78 E-value=75 Score=24.03 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=29.8
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHH
Q 007134 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLA 127 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 127 (616)
..+.|+++++.++.+....|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 688899999999998888999999999776765544
No 313
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.72 E-value=4.1e+02 Score=25.06 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
+++..+.+.|+.|..++..-++..+++.=.++.+.++++.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 566677777777777777777777777767777777777653
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.59 E-value=1e+02 Score=23.24 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 007134 293 GIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 293 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788889999998888888999998887777765553
No 315
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.52 E-value=1.7e+02 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=8.8
Q ss_pred HHHhcCCHHHHHHHHhh
Q 007134 187 MYAAFGHVKDACKVFEL 203 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~ 203 (616)
..+..|+.+-+..+++.
T Consensus 83 ~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33455555555555544
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.95 E-value=4.1e+02 Score=24.12 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHhhc
Q 007134 185 VHMYAAFGHVKDACKVFELM 204 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~ 204 (616)
+...+..|+.+-+.-+++.-
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 33344555555555555443
No 317
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.90 E-value=4e+02 Score=23.97 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=19.1
Q ss_pred CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 205 SERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
..++...-...+.++.+.|..+ ++..+.++.. .++...-...+.++...
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININ 186 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhh
Confidence 3344444444445555555422 3334434333 23433333344444433
No 318
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.47 E-value=3e+02 Score=23.91 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.+..|.+.|.+++|.+++++..+..+.+.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 34578889999999999998876665533
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.17 E-value=3.9e+02 Score=23.26 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHHH---hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHhCCC
Q 007134 213 NSVINGFA---SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-----LALGRRAHTYVWKVGLS 276 (616)
Q Consensus 213 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~~ 276 (616)
--+|+++. +..+.+.|+-.+-+|++.| .|....-..++-+....|. +..|...++.....|.+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33455554 4688999999999999999 7776666666667666653 33444455555555643
No 320
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.09 E-value=4.4e+02 Score=25.62 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcC
Q 007134 117 GYAESANPLLAVELYSKMHVSGIKPDTHT--YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF--VQNSLVHMYAAFG 192 (616)
Q Consensus 117 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g 192 (616)
.-+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+-++ .+++.|..++.. ...+.+...++.|
T Consensus 20 ~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 20 VASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 334455543 4444445565555321 123344444455554333 333444333211 1122334445566
Q ss_pred CHHHHHHHHhhc
Q 007134 193 HVKDACKVFELM 204 (616)
Q Consensus 193 ~~~~A~~~f~~~ 204 (616)
+.+-+.-+++.-
T Consensus 92 ~~~~v~~Ll~~g 103 (437)
T 1n11_A 92 HTNMVKLLLENN 103 (437)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHhCC
Confidence 666666555543
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.00 E-value=2.9e+02 Score=23.84 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=6.0
Q ss_pred CHHHHHHHHhh
Q 007134 92 PMSYAHNIFSH 102 (616)
Q Consensus 92 ~~~~A~~~f~~ 102 (616)
+++....+++.
T Consensus 18 ~~~~v~~ll~~ 28 (231)
T 3aji_A 18 KLDELKERILA 28 (231)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 55555555543
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.98 E-value=2.5e+02 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007134 182 NSLVHMYAAFGHVKDACKVFELMSER 207 (616)
Q Consensus 182 ~~Li~~y~~~g~~~~A~~~f~~~~~~ 207 (616)
.++|.=|...|++++|.+.++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 45666666667777777777666555
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.96 E-value=2.6e+02 Score=26.38 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--ccHHHHHHHHHHHCCCCCCH
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNGK--PNEALTLFREMASEGVEPDG 244 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 244 (616)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 4678888888999999999999987652 2334445555554432 34566777887776654433
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.93 E-value=3.3e+02 Score=22.25 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444445555556666666655554455555555555555544
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.70 E-value=1.5e+02 Score=24.87 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHHHHHHH-HHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHhcCC
Q 007134 126 LAVELYSKM-HVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN--GFESLVFVQNSLVHMYAAFGH 193 (616)
Q Consensus 126 ~A~~l~~~m-~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~ 193 (616)
.+++-+.+. .+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344434333 3346665432 344556666655666677777777665 444444433334556666664
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.14 E-value=4.4e+02 Score=23.41 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCc
Q 007134 125 LLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177 (616)
Q Consensus 125 ~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 177 (616)
+++.++|..|...||.-... -|......+-..|++.+|.++|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46777888888777665543 355556666677888888888887777766663
No 327
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.74 E-value=23 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.2
Q ss_pred ecccccCchhhHH
Q 007134 571 KNLRVCADCHLAI 583 (616)
Q Consensus 571 ~~~~~c~~~~~~~ 583 (616)
-++|+|.+|+..+
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 3799999998643
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.57 E-value=2.2e+02 Score=22.85 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
.-.|.++++.+.+.+...+..|..--++.+.+.|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433333333333334444444
No 329
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.30 E-value=6.1e+02 Score=24.76 Aligned_cols=279 Identities=11% Similarity=0.057 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHhCCC-ccHHHHHHHHHHHCCCCCCHHHH-----
Q 007134 182 NSLVHMYAAFGHVKDACKVFELMSE--------RDLVAWNSVINGFASNGK-PNEALTLFREMASEGVEPDGYTM----- 247 (616)
Q Consensus 182 ~~Li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~----- 247 (616)
..|...|.+.|+.++..+++..... +....-..+|..+....+ .+.-.++..+..+.. .-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4456666666666666666655432 112234445555544322 222233333322110 0011222
Q ss_pred -HHHHHHHHhcCchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHH
Q 007134 248 -VSLFSACAELGALALGRRAHTYVWKVG--LS---DNVNVNNALLDFYSKCGIIIAAQRVFREMRK------RNAVSWST 315 (616)
Q Consensus 248 -~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~ 315 (616)
..+...|...|++.+|..++..+.+.- .. .-..++-.-+.+|...|++.++...+..... +++..-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 134555666666666666666555421 11 1133444555666777777766666654321 12211111
Q ss_pred ----HHHHHH-HcCCHHHHHHHHHHHHh----CCCcCC---HHHHHHHHHHHhcCCChHHHHHHH-HHhHHhhCCCCChh
Q 007134 316 ----LVVGLA-VNGFGKEALELFKEMEI----GGFVPG---EVTFVGVLYACSHCGMVDEGFSYF-KRMKDEYGIMPKIE 382 (616)
Q Consensus 316 ----li~~~~-~~g~~~~A~~l~~~m~~----~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~-~~m~~~~~~~p~~~ 382 (616)
-...+. ..+++..|...|-+..+ .| .|. ...|..+. +... ++..+-..++ ......+ ..|...
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH-HHHc-CCHHHHHHHhcccccccc-CCccHH
Confidence 122344 56777777777666532 11 121 22332222 2222 2222222222 1111212 346666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHH---HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIW---RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
.+..++.+| +.+++.+...+++... +..|.... ..|..... ...+.++ ..|-..-....++...
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHHH
Confidence 666666665 5677887777777663 44465432 22221111 1112222 2343222233333333
Q ss_pred HhcccchHHHHHHHHHhhCCC
Q 007134 458 AYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~ 478 (616)
.- ..+++...+-+|...|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 22 56788888888887664
No 330
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.18 E-value=3.9e+02 Score=24.26 Aligned_cols=89 Identities=8% Similarity=0.015 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 388 VDLLGRAGLVKQAYEYIQNMLMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
+...+..|+.+-+.-+++.-....+. .-+ +.+......|+.+....+++.-...+..+..........-...|+
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~---- 207 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD---- 207 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----
Confidence 33445566666555555443322222 222 333444567777777777766544443332222221112223344
Q ss_pred HHHHHHHhhCCCccC
Q 007134 467 QEVRRTMVKERVKKT 481 (616)
Q Consensus 467 ~~~~~~m~~~~~~~~ 481 (616)
.++.+.+.+.|..+.
T Consensus 208 ~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 208 IEMLQALFKYDINIY 222 (285)
T ss_dssp HHHHHHHTTSCBCST
T ss_pred HHHHHHHHHcCCCCC
Confidence 334555556665543
Done!