BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007135
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/554 (46%), Positives = 351/554 (63%), Gaps = 20/554 (3%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRSA+Y+P+ W YD+L S + +E Y + +KL+ EVR + N++ ++ L LE++
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEF---LTLLELI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
DN+QRLG+ Y FE +I+R L R S + K +SL+A AL FRLLRQHGF++
Sbjct: 72 DNVQRLGLGYRFESDIRRALDRFV----SSGGFDGVTK--TSLHATALSFRLLRQHGFEV 125
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+Q S F D+ G L +D K I NI +EA F +HLKE
Sbjct: 126 -SQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEG-ENILDEARVFAISHLKELS 183
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299
+ + L+ V HALELPLH R RLEA W I+ Y++ D NQVL+ELA LD+N +
Sbjct: 184 EEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMI 240
Query: 300 QAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANAL 358
Q+ +Q +L+ SRWWR+ GL +LHFARDR++E+F+WA+G +EPQ+ CR K +
Sbjct: 241 QSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSF 300
Query: 359 ITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKK 418
+T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCFL L+N+ NE+A+D LK
Sbjct: 301 VTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKD 360
Query: 419 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIA 478
+G +I+PYL KAWAD+C +FL EAKW + PT ++Y NAW S SGP+ L+ AY +
Sbjct: 361 KGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVV 420
Query: 479 NPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538
KE ++ L++Y +II PS IFRL NDLA++S E+ RG+ ++ CYM G SE
Sbjct: 421 QNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL 480
Query: 539 AREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK 598
A E + +LI TW KMN E L + F+ AINLAR + CTY NGD HT +
Sbjct: 481 ATESVMNLIDETWKKMNK----EKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDE 536
Query: 599 -SKNRVLPLLVHPV 611
++ RVL ++ P+
Sbjct: 537 LTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/540 (44%), Positives = 351/540 (65%), Gaps = 16/540 (2%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRS NY PS W +++QSL ++Y + + R +L V++ LE + D + QLE++
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE----TDQIRQLELI 57
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D+LQR+G+S HF++E K LS IY + + + KE E LY+ +L FRLLR+HGF +
Sbjct: 58 DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKE--ERDLYSTSLAFRLLREHGFQV 115
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
AQ F +E+G+ K L DD +G+ + + A F T L+E V
Sbjct: 116 -AQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL-ESAREFATKFLEEKV 173
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299
N DG L T + ++L++PLHWR+ R A +I+ Y++ PD+N V++ELA LD N V
Sbjct: 174 --NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIV 231
Query: 300 QAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANAL 358
QA+ QEELK RWWR TG E L FARDR++E +FW G + Q R M K NAL
Sbjct: 232 QAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNAL 291
Query: 359 ITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKK 418
IT IDD+YDVYGTL+ELE FT+ + RWD+N++DQLP YM+LCFL L+N ++ ++DV+K+
Sbjct: 292 ITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKE 351
Query: 419 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIA 478
+GV++IPYL+++W D+ +++EA+W+ G+ P+LEEY++N+W S+SGP +L H + +
Sbjct: 352 KGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVT 411
Query: 479 NPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538
+ TKE + L +Y +++RW S + RLA+DL TS +EV RGDVPK++QCYM + ASE++
Sbjct: 412 DSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471
Query: 539 AREHIRDLITATWMKMNS-KDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQH 597
AR+H++ LI W KMN+ + ++P +FI A++L RMAQ Y NGDGH QH
Sbjct: 472 ARKHVKWLIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGDGHGTQH 527
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/553 (44%), Positives = 342/553 (61%), Gaps = 26/553 (4%)
Query: 61 RSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVD 120
R+ YQP++W + +QS +EY E + R + +V++ML+ + VD++ +LE++D
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE----VDSIRRLELID 91
Query: 121 NLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMH 180
+L+RLG+S HFE EI L+ Y Y E E LY+ AL FRLLRQ+ F +
Sbjct: 92 DLRRLGISCHFEREIVEILNSKY--------YTNNEIDERDLYSTALRFRLLRQYDFSV- 142
Query: 181 AQGTLSLFMDEKGK-LKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+Q F + KG K L DD +G+ + A +F T L++ V
Sbjct: 143 SQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETL-RLARDFATKFLQKRV 201
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299
D D L + +E ALELP HWR+ AR FID Y+R PD+N ++ELAKLDFN V
Sbjct: 202 L---VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMV 258
Query: 300 QAEHQEELKYVSRWWRKTGL-GELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANAL 358
QA+ Q+ELK SRWW TGL EL F RDRI+E ++W G V Q GY R M TK NAL
Sbjct: 259 QAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINAL 318
Query: 359 ITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKK 418
+TTIDDV+D+YGTL+EL+LFT A++RWD+ +M QLP YM++C+L L N NEMA+D L+
Sbjct: 319 VTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRD 378
Query: 419 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIA 478
+G PYL+K W + +S+L+EAKWY G+ P+LEEYM N+WIS+ G IL H + +
Sbjct: 379 KGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLT 438
Query: 479 NPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538
+ +EA + + +Y +I+R I RLA+D+ TS DEV+RGDVPK++QCYM+E ASE +
Sbjct: 439 DSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEE 498
Query: 539 AREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQN-GDGHTIQH 597
AREH+R LI TW MN + + S F+ + NLARMAQ YQ+ DG +QH
Sbjct: 499 AREHVRSLIDQTWKMMNKEMMTSS-----FSKYFVEVSANLARMAQWIYQHESDGFGMQH 553
Query: 598 KSKNRVL-PLLVH 609
N++L LL H
Sbjct: 554 SLVNKMLRDLLFH 566
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/558 (42%), Positives = 342/558 (61%), Gaps = 19/558 (3%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRS NYQP++W +Y+QSL+ Y E + R +L +VR++L+ K ++ + QLE++
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK----MEPVQQLELI 61
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
+L+ LG+S F+DEIK L IYNE +H E ++ LY AL FRLLRQHGF++
Sbjct: 62 HDLKYLGLSDFFQDEIKEILGVIYNEHKC---FHNNEVEKMDLYFTALGFRLLRQHGFNI 118
Query: 180 HAQGTLSLFMDEKG-KLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEY 238
+Q + F +EKG K+ L D KG+ + A F T L++
Sbjct: 119 -SQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQKK 176
Query: 239 VKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNA 298
+ N+ D L + H+L+LPLHWR+ +EARWFID Y R PD+N ++ ELAKL+FN
Sbjct: 177 LDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNI 236
Query: 299 VQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEP-QFGYCRRMSTKAN 356
+QA HQ+ELK +SRWW + E L F RDR++E+FFWA+G ++EP Q GY R+M+
Sbjct: 237 IQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATII 295
Query: 357 ALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVL 416
L T IDD+YDVYGTLDELELFT+ +RWD ++ +LPYYM+LC+ +HN ++ A+D+L
Sbjct: 296 VLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDIL 355
Query: 417 KKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL 476
K+ G + YL+K+ D+ +++ EAKWY SGY P+L+EY++ A ISV+ P I+ Y
Sbjct: 356 KEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFT 415
Query: 477 IANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS 535
AN A + L +Y +I+ +I RL +DL TS E+ RGDVPK IQCYM ET AS
Sbjct: 416 FANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNAS 475
Query: 536 ESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTI 595
E +A EH++ LI W MN+ P + + A N+ R+AQ Y +GDG +
Sbjct: 476 EEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLHGDGFGV 531
Query: 596 QH-KSKNRVLPLLVHPVS 612
QH K+ + LL P +
Sbjct: 532 QHSKTYEHIAGLLFEPYA 549
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 188/558 (33%), Positives = 298/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHTIQ 596
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 597 HKS-KNRVLPLLVHPVSL 613
K K ++ LLV + +
Sbjct: 531 EKVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 189/558 (33%), Positives = 297/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YAQ IE LK + R ML D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DIIERLGISYHFEKEIDEILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHTIQ 596
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 597 HKS-KNRVLPLLVHPVSL 613
K K ++ LLV + +
Sbjct: 531 EKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 191/573 (33%), Positives = 303/573 (52%), Gaps = 34/573 (5%)
Query: 51 SVCEKAISN------RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN 104
S+ A++N R A++ PS+WG +L V E YA+ IE LK + R ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 105 KEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYA 164
+ D L+ ++D ++RLG+SYHFE EI L +IYN+ NS + L
Sbjct: 62 TGMKLADTLN---LIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCT 108
Query: 165 VALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIF 224
AL+FRLLRQHGF++ + S F DE GK K L D+ G+ +I
Sbjct: 109 SALQFRLLRQHGFNISPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDIL 166
Query: 225 NEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPD 283
+A+ F+T HL+ H + L V HALE LH + R+E R+FI +Y +
Sbjct: 167 EDALAFSTIHLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS 222
Query: 284 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWE 342
N VL+ AKLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +E
Sbjct: 223 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE 282
Query: 343 PQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFL 402
PQ+ R M K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ +
Sbjct: 283 PQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYK 342
Query: 403 VLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWI 462
+ + + ++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA
Sbjct: 343 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 402
Query: 463 SVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVP 522
+ + + +Y L T++ ++L + P I+ +I R+ +D AT E RG +
Sbjct: 403 TTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 461
Query: 523 KAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARM 582
I+C M + G S +A +++ W +N P +S F+ +NLAR+
Sbjct: 462 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARI 517
Query: 583 AQCTY-QNGDGHTIQHKS-KNRVLPLLVHPVSL 613
+ TY N DG+T K K ++ LLV + +
Sbjct: 518 VEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 188/558 (33%), Positives = 297/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L V E YA+ IE LK + R ML + D L+ ++
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 58
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 59 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 108
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 109 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 166
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 167 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 222
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M K +
Sbjct: 223 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTIS 282
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 283 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 342
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 343 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 401
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I R+ +D AT E RG + I+C M + G S
Sbjct: 402 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 461
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHTIQ 596
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 462 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 517
Query: 597 HKS-KNRVLPLLVHPVSL 613
K K ++ LLV + +
Sbjct: 518 EKVLKPHIINLLVDSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 187/558 (33%), Positives = 299/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I+R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHT-I 595
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 596 QHKSKNRVLPLLVHPVSL 613
+ K ++ LLV + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 188/558 (33%), Positives = 297/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YAQ IE LK + R ML D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DIIERLGISYHFEKEIDEILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHT-I 595
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 596 QHKSKNRVLPLLVHPVSL 613
+ K ++ LLV + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 305 bits (781), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 190/573 (33%), Positives = 303/573 (52%), Gaps = 34/573 (5%)
Query: 51 SVCEKAISN------RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN 104
S+ A++N R A++ PS+WG +L V E YA+ IE LK + R ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 105 KEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYA 164
+ D L+ ++D ++RLG+SYHFE EI L +IYN+ NS + L
Sbjct: 62 TGMKLADTLN---LIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCT 108
Query: 165 VALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIF 224
AL+FRLLRQHGF++ + S F DE GK K L D+ G+ +I
Sbjct: 109 SALQFRLLRQHGFNISPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDIL 166
Query: 225 NEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPD 283
+A+ F+T HL+ H + L V HALE LH + R+E R+FI +Y +
Sbjct: 167 EDALAFSTIHLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS 222
Query: 284 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWE 342
N VL+ AKLDFN +Q H++EL VSRWW+ + L +ARDR++E +FW LG +E
Sbjct: 223 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFE 282
Query: 343 PQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFL 402
PQ+ R M K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ +
Sbjct: 283 PQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYK 342
Query: 403 VLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWI 462
+ + + ++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA
Sbjct: 343 AILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALA 402
Query: 463 SVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVP 522
+ + ++ +Y L T++ ++L + P I+ +I R+ +D AT E RG +
Sbjct: 403 TTTYYLLATTSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 461
Query: 523 KAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARM 582
I+C M + G S +A +++ W +N P +S F+ +NLAR+
Sbjct: 462 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARI 517
Query: 583 AQCTY-QNGDGHTIQHKS-KNRVLPLLVHPVSL 613
+ TY N DG+T K K ++ LLV + +
Sbjct: 518 IEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/558 (32%), Positives = 298/558 (53%), Gaps = 29/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++QPS+WG D + ++ + +R ++LK EVR M+ ++ +L +
Sbjct: 22 RPKADFQPSIWG-DLFLNCPDKNIDAETEKRHQQLKEEVRKMIV---APMANSTQKLAFI 77
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D++QRLGVSYHF EI+ L IY+ N E+ LY ++ FRLLR+HG+++
Sbjct: 78 DSVQRLGVSYHFTKEIEDELENIYHNNND---------AENDLYTTSIRFRLLREHGYNV 128
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ F DE+G KS + D++G+ +I +EAI+FTT HL V
Sbjct: 129 SCD-VFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHG-EDILDEAISFTTHHLSLAV 186
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299
D LS V HAL+ + + R+EAR ++ +YQ N+ L+E AK+DFN +
Sbjct: 187 ASL----DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNML 242
Query: 300 QAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANAL 358
Q H++EL + RWW+ +L +ARDR++E +FW G +EPQ+ R+M TK A+
Sbjct: 243 QFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAM 302
Query: 359 ITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKK 418
+ +DD YD Y T +EL +TNA+ERWD+ +D++P YMK + L + EM V +
Sbjct: 303 ASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEH 362
Query: 419 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIA 478
+ + Y K A + +S+L+EAKW Y P+ EE+ NA + ++ + ++ +
Sbjct: 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMG 422
Query: 479 NPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538
+ T E ++ P II+ ++I R +D+A + +R D AI+CYM E G + +
Sbjct: 423 DIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482
Query: 539 AREHIRDLITATWMKMNSK--DGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHT-I 595
A + + + W +N + E P +L ++NLAR+ Y+ GDG+T +
Sbjct: 483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVL------NRSLNLARVMDVLYREGDGYTYV 536
Query: 596 QHKSKNRVLPLLVHPVSL 613
+K + LL+ P++L
Sbjct: 537 GKAAKGGITSLLIEPIAL 554
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 301 bits (772), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 186/558 (33%), Positives = 298/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +F ALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I+R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHT-I 595
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 596 QHKSKNRVLPLLVHPVSL 613
+ K ++ LLV + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 301 bits (771), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 186/558 (33%), Positives = 297/558 (53%), Gaps = 28/558 (5%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
+ S F DE GK K L D+ G+ +I +A+ F+T HL+
Sbjct: 122 SPE-IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLESAA 179
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFNA 298
H + L V HALE LH + R+E R+FI +Y + N VL+ AKLDFN
Sbjct: 180 PHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 235
Query: 299 VQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
+Q H++EL VSRWW+ + L +ARDR++E +F ALG +EPQ+ R M K +
Sbjct: 236 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTIS 295
Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
+I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + ++
Sbjct: 296 MISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSS 355
Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L
Sbjct: 356 AGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LG 414
Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
T++ ++L + P I+ +I R+ +D AT E RG + I+C M + G S
Sbjct: 415 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 474
Query: 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNGDGHT-I 595
+A +++ W +N P +S F+ +NLAR+ + TY N DG+T
Sbjct: 475 EAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNLDGYTHP 530
Query: 596 QHKSKNRVLPLLVHPVSL 613
+ K ++ LLV + +
Sbjct: 531 EEVLKPHIINLLVDSIKI 548
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/526 (30%), Positives = 276/526 (52%), Gaps = 31/526 (5%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
+D +L VD ++RLG+ HF++EIK L +Y+ + R A+E + A+
Sbjct: 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGL 327
Query: 170 RLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXX--XSNIFNEA 227
R+LR HG+++ + L F DE G+ LG +G+ I EA
Sbjct: 328 RILRLHGYNVSSD-VLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEA 386
Query: 228 INFTTTHLKEYVKHNNNDDD----GYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD 283
T +L+ +++ + D + VE+AL+ P H M RLEAR +I+ Y GPD
Sbjct: 387 KLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENY--GPD 444
Query: 284 --------------VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRI 329
N+ +ELAKLDFN VQ+ HQ EL+ + RWW+ +G +L+F R+R+
Sbjct: 445 DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERV 504
Query: 330 MENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNA 389
E +F ++EP+F CR + TK + +DD+YD +G+LD+L+LFT +V+RWD++
Sbjct: 505 TEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSL 564
Query: 390 MDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGY 449
+DQ+P MK+CF+ +N+ N++A + ++QG ++ Y++ W +++ EA+W + Y
Sbjct: 565 VDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKY 624
Query: 450 IPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509
+P+ EY++NA +S++ ++L + T E L ++ ++ + RL ND
Sbjct: 625 VPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDT 684
Query: 510 ATSSDEVKRGDVPKAIQCYMHE-TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLL 568
T E +G+V AIQCYM + SE +A +H+ ++ ++N + + +
Sbjct: 685 KTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-----I 739
Query: 569 SNNFIRFAINLARMAQCTYQNGDGHTIQH--KSKNRVLPLLVHPVS 612
+ + R AR+ Q Y GDG T+ H + K V L PV+
Sbjct: 740 PDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/530 (32%), Positives = 279/530 (52%), Gaps = 34/530 (6%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
VD L +L IVDN+ RLG+ HFE EIK L +Y N R + + L AL F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355
Query: 170 RLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXX--XSNIFNEA 227
RLLR H +++ + F D GK G K + NI +EA
Sbjct: 356 RLLRLHRYNV-SPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEA 414
Query: 228 INFTTTHLKEYVKHNNN----DDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD 283
+F T +L+E ++ + ++ LS +++AL+ H + R+EA+ + +Y+ PD
Sbjct: 415 KSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PD 472
Query: 284 V--------------NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRI 329
N+ +EL KLDFN +Q+ HQEE+K V+ W+R +GL FAR+R
Sbjct: 473 YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERP 532
Query: 330 MENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNA 389
+E +F +EPQ+ CR + TK L T +DD+YD YGTLDEL+LFT AV RWD++
Sbjct: 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF 592
Query: 390 MDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGY 449
+ LP YMKLC+ + ++ +E+A++ K+QG ++ + +K W D + EA+W ++ Y
Sbjct: 593 TENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEY 652
Query: 450 IPTLEEYMDNAWISVSGPVILLHAYTLI-ANPPTKEALQFLEEYPN---IIRWPSMIFRL 505
+PTL+EY+ N S+ ++LL ++ ++EAL+ + +YP + S+I RL
Sbjct: 653 VPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKV-DYPGRRVLTELNSLISRL 711
Query: 506 ANDLATSSDEVKRGDVPKAIQCYMHE-TGASESDAREHIRDLITATWMKMNSKDGDENPD 564
A+D T E RG++ +I+CYM + +E +A +HI ++ ++ + PD
Sbjct: 712 ADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE--FLKPD 769
Query: 565 HLLLSNNFIRFAINLARMAQCTYQNGDGHTIQH-KSKNRVLPLLVHPVSL 613
+ + + F R+ +++GDG + + K+ + L+ P+ L
Sbjct: 770 DVPFACKKMLF--EETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 42 VQCTAANATSVCEKAISN---RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEV 98
V + ++ VC+ + ++ RR+AN P++WGYD + SL + Y+ SY +R E L E+
Sbjct: 4 VSAVSKVSSLVCDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEI 63
Query: 99 RLML 102
+ ML
Sbjct: 64 KAML 67
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 259/521 (49%), Gaps = 25/521 (4%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
+D L +L +VDN++ LG+ HF+ EIK L +Y + R ++ L AL
Sbjct: 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGL 303
Query: 170 RLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGD---DIKGIXXXXXXXXXXXXXXSNIFNE 226
R LR HG+++ + L+ F DE G+ S G +++ + + ++
Sbjct: 304 RTLRMHGYNVSSD-VLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAM-DD 361
Query: 227 AINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQ------- 279
A F +L+E + + + +E+ +E P H + RLEAR +ID Y
Sbjct: 362 ARKFAEPYLREALATKISTNTKLFKE-IEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQR 420
Query: 280 ----RGPDV-NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFF 334
R P + N +ELAKLDFN VQ+ HQEELK ++RWW+++G+ +++F R R+ E +F
Sbjct: 421 KTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYF 480
Query: 335 WALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLP 394
+ +EP++ R TK L DD+ D++ TLDEL+ FT V+RWD + + ++P
Sbjct: 481 SS--ATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIP 538
Query: 395 YYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLE 454
M+ CF V E+ DV+K QG ++ +++K W ++ E +W +GYIPT E
Sbjct: 539 ECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFE 598
Query: 455 EYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSD 514
EY+ ISV L L+ + ++ + N+ S+ +RL ND T
Sbjct: 599 EYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQA 658
Query: 515 EVKRGDVPKAIQCYMHET-GASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFI 573
E RG I CYM + GA+E DA +HI ++ + + + + D + +FI
Sbjct: 659 EKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFI 718
Query: 574 RFAINLARMAQCTYQNGDGHTIQHKS-KNRVLPLLVHPVSL 613
NL Q Y+ DG+ I ++ K+ + + + P+ +
Sbjct: 719 ---FNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 28/317 (8%)
Query: 65 YQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQR 124
+ PS + ++Q+ + +E +++ G V V VD + IVD LQR
Sbjct: 205 FSPSSTAFAFMQT-RDSNCLEYLRNAVKRFNGGV------PNVFPVDLFEHIWIVDRLQR 257
Query: 125 LGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGT 184
LG+S +FE+EIK L ++ A+ + A+ FRLLRQHG+ + A
Sbjct: 258 LGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVF 317
Query: 185 LSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXX--XSNIFNEAINFTTTHLKEYVKHN 242
+ +++G+ +G + + I A F+ +L E +
Sbjct: 318 KNF--EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRERE 375
Query: 243 NNDDDGY----LSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDV-------------N 285
D L + ALE+P + + R+E R++ID Y DV N
Sbjct: 376 ELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNN 435
Query: 286 QVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQF 345
+ELAK D+N QA+HQ E +W+ + L E R ++E ++ A ++E +
Sbjct: 436 NGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESER 495
Query: 346 GYCRRMSTKANALITTI 362
+ R + K++ L+ I
Sbjct: 496 SHERMVWAKSSVLVKAI 512
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 319 LGELHFARDRIME---NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL 375
L EL R+++ F +L ++ GY N L + V+D +L EL
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY--------NELQSLPKGVFDKLTSLKEL 162
Query: 376 ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS----TNEMAFDVLKKQGVHIIPYLKKAW 431
L+ N ++R A D+L +L L L N+ E AFD L+K + ++ + W
Sbjct: 163 RLYNNQLKRVPEGAFDKL---TELKTLKLDNNQLKRVPEGAFDSLEK--LKMLQLQENPW 217
Query: 432 ADMCKSFLLEAKW 444
C + AKW
Sbjct: 218 DCTCNGIIYMAKW 230
>pdb|1OL0|A Chain A, Crystal Structure Of A Camelised Human Vh
pdb|1OL0|B Chain B, Crystal Structure Of A Camelised Human Vh
Length = 121
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 117 EIVDNLQRLGVSYHFEDEIK-RFLSRIYNERNSRS-SYHAKEKQESSLYAVALEFRLLRQ 174
EIV + G S ++ D ++ RF N +N+ ++ +++++Y A E R+ R
Sbjct: 46 EIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQXNSLRAEDTAVYYCAREPRIPRP 105
Query: 175 HGFDMHAQGTL 185
FD QGTL
Sbjct: 106 PSFDYWGQGTL 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,097,994
Number of Sequences: 62578
Number of extensions: 736794
Number of successful extensions: 1961
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 25
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)