Query 007135
Match_columns 616
No_of_seqs 239 out of 892
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-151 4E-156 1270.3 51.8 536 60-610 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 7E-139 2E-143 1191.7 48.4 514 88-615 245-780 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1E-115 2E-120 996.7 44.6 479 88-612 285-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 3E-55 6.5E-60 425.5 16.9 177 70-258 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 1.6E-47 3.5E-52 391.7 18.5 268 288-555 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 6.5E-45 1.4E-49 375.1 27.6 282 302-587 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 3.6E-32 7.8E-37 284.4 19.1 244 309-558 18-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 7.1E-30 1.5E-34 223.4 9.1 94 516-613 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 4E-20 8.6E-25 182.2 10.8 229 335-581 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.4 0.0011 2.3E-08 71.3 10.7 197 339-558 76-277 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.2 0.0033 7.1E-08 66.7 12.2 191 345-557 81-276 (357)
12 cd00867 Trans_IPPS Trans-Isopr 88.6 6.8 0.00015 39.2 12.5 119 423-557 86-215 (236)
13 PF00494 SQS_PSY: Squalene/phy 86.5 6.5 0.00014 40.4 11.1 195 331-557 6-218 (267)
14 cd00683 Trans_IPPS_HH Trans-Is 82.8 43 0.00093 34.5 15.2 209 332-581 13-237 (265)
15 TIGR03464 HpnC squalene syntha 81.8 49 0.0011 34.2 15.2 118 331-475 6-129 (266)
16 TIGR03465 HpnD squalene syntha 78.8 52 0.0011 34.0 14.2 187 332-557 7-208 (266)
17 PLN02632 phytoene synthase 72.8 82 0.0018 33.9 14.2 107 348-476 74-184 (334)
18 TIGR02749 prenyl_cyano solanes 67.1 1.2E+02 0.0026 32.5 13.9 88 422-514 133-221 (322)
19 cd00685 Trans_IPPS_HT Trans-Is 66.3 62 0.0013 33.2 11.2 120 422-556 108-239 (259)
20 PLN02857 octaprenyl-diphosphat 65.8 83 0.0018 35.1 12.6 88 422-514 227-315 (416)
21 PLN02890 geranyl diphosphate s 60.6 1.7E+02 0.0036 32.8 13.8 89 422-515 227-316 (422)
22 COG0142 IspA Geranylgeranyl py 53.7 3.1E+02 0.0067 29.4 14.7 105 422-533 134-250 (322)
23 TIGR02748 GerC3_HepT heptapren 48.7 3.4E+02 0.0073 29.0 13.4 87 422-514 129-217 (319)
24 KOG1719 Dual specificity phosp 48.2 13 0.00028 35.8 2.2 30 517-546 119-149 (183)
25 CHL00151 preA prenyl transfera 42.4 4.4E+02 0.0095 28.1 13.1 87 423-514 135-222 (323)
26 PF10776 DUF2600: Protein of u 42.4 4.8E+02 0.01 28.3 15.5 95 477-592 202-296 (330)
27 COG3707 AmiR Response regulato 41.4 20 0.00042 35.7 2.4 42 505-546 130-172 (194)
28 PF03861 ANTAR: ANTAR domain; 38.8 22 0.00047 27.9 1.9 28 521-548 15-42 (56)
29 PF12368 DUF3650: Protein of u 34.5 27 0.00058 23.9 1.5 18 527-544 9-26 (28)
30 PF13243 Prenyltrans_1: Prenyl 31.0 48 0.001 28.8 3.0 94 135-234 1-105 (109)
31 COG5123 TOA2 Transcription ini 28.5 62 0.0013 28.7 3.1 42 203-258 1-42 (113)
32 KOG3887 Predicted small GTPase 28.2 28 0.00062 36.0 1.2 188 339-537 87-314 (347)
33 TIGR01507 hopene_cyclase squal 27.9 3.4E+02 0.0073 32.1 10.1 111 115-232 454-587 (635)
34 PF06603 UpxZ: UpxZ family of 26.9 70 0.0015 28.7 3.2 63 493-556 25-90 (106)
35 TIGR01559 squal_synth farnesyl 21.2 1.1E+03 0.023 25.6 16.8 202 331-556 14-238 (336)
36 smart00463 SMR Small MutS-rela 21.2 1.1E+02 0.0024 25.3 3.3 23 532-554 7-29 (80)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.8e-151 Score=1270.25 Aligned_cols=536 Identities=49% Similarity=0.819 Sum_probs=512.3
Q ss_pred CCCCCCCCCCCCcCccccCCchhhhh-HHHHHHHHHHHHHHHHhhcc--cccccchhhhHHHHHHHHHhCCccccHHHHH
Q 007135 60 RRSANYQPSMWGYDYLQSLSNEYVVE-SYAQRIEKLKGEVRLMLENK--EVDYVDALHQLEIVDNLQRLGVSYHFEDEIK 136 (616)
Q Consensus 60 r~~~~~~ps~W~~~fl~~~~~~~~~~-~~~~~~~~lk~~V~~~l~~~--~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~ 136 (616)
|++++||||+||++++++++.++... .+.+++++||++||+|+... + .|++++|++||+||||||+|||++||+
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~---~~~~~~l~liD~lqrLGi~~hF~~EI~ 77 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP---VDLFERLWLIDRLQRLGISYHFEDEIK 77 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 78999999999995555545444433 78899999999999999864 3 699999999999999999999999999
Q ss_pred HHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccC
Q 007135 137 RFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLL 216 (616)
Q Consensus 137 ~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~ 216 (616)
++|++||+.|.+++ +....||++|||+|||||||||+||| |||++|||++|+|++++.+||+|||||||||||+
T Consensus 78 ~~L~~i~~~~~~~~-----~~~~~dl~~~al~FRlLR~~Gy~vs~-dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~ 151 (542)
T cd00684 78 EILDYIYRYWTERG-----ESNEDDLYTTALGFRLLRQHGYNVSS-DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS 151 (542)
T ss_pred HHHHHHHHhhcccc-----cccCCCHHHHHHHHHHHHHcCCCcCH-HHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcC
Confidence 99999999987543 22368999999999999999999999 9999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhh
Q 007135 217 VEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDF 296 (616)
Q Consensus 217 ~~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDF 296 (616)
|||| +|||||++||++||+++++++ ++++++|+++|++||++|||+++||||||+||++|++++++|++|||||||||
T Consensus 152 ~~gE-~iLdeA~~ft~~~L~~~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldf 229 (542)
T cd00684 152 FPGE-DILDEALSFTTKHLEEKLESN-WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDF 229 (542)
T ss_pred CCCc-HHHHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHH
Confidence 9999 999999999999999999864 56788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHH
Q 007135 297 NAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL 375 (616)
Q Consensus 297 n~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl 375 (616)
|+||++||+||++++|||+++||.+ |||+|+|+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|+
T Consensus 230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl 309 (542)
T cd00684 230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL 309 (542)
T ss_pred HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence 9999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHh
Q 007135 376 ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEE 455 (616)
Q Consensus 376 ~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleE 455 (616)
+.||+||+|||+++++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|+++++||++||+|+++||+||++|
T Consensus 310 ~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE 389 (542)
T cd00684 310 ELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE 389 (542)
T ss_pred HHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCC
Q 007135 456 YMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS 535 (616)
Q Consensus 456 Yl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S 535 (616)
||++|.+|+|++++++++++++|..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|
T Consensus 390 Yl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s 469 (542)
T cd00684 390 YMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVS 469 (542)
T ss_pred HHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCC
Confidence 99999999999999999999999999999999987779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccc
Q 007135 536 ESDAREHIRDLITATWMKMNSKDGDE-NPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHP 610 (616)
Q Consensus 536 eEeA~~~i~~mI~~~wK~lN~e~l~~-~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~p 610 (616)
+|||+++++++|+++||+||++++++ ++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|
T Consensus 470 ~eeA~~~i~~~ie~~wk~ln~e~l~~~~~----~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 470 EEEAREEIKKMIEDAWKELNEEFLKPSSD----VPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999987 56 9999999999999999999999999999866 999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=7.3e-139 Score=1191.68 Aligned_cols=514 Identities=28% Similarity=0.422 Sum_probs=484.5
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHH
Q 007135 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (616)
Q Consensus 88 ~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~a 166 (616)
.++..+|...|++.-++.|+.|+ ++++++|+||+||||||+|||++||+++|+++|+.|... ++....|+++||
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~-----~~~~~~Dl~~tA 319 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQG-----EEEIFLDLATCA 319 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccc-----ccCCCCCHHHHH
Confidence 57889999999998888888997 999999999999999999999999999999999988642 233468999999
Q ss_pred HHHHHHHhcCCCCCccccccccccccccccccc---ccchHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcCC
Q 007135 167 LEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNN 243 (616)
Q Consensus 167 l~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~~ 243 (616)
|+|||||||||+||| |||++|+|+ + |++++ .+||+||||||||||++|||| +|||||+.||++||++.++++.
T Consensus 320 l~FRLLR~hGy~VS~-dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~~ 395 (784)
T PLN02279 320 LAFRILRLNGYDVSS-DPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQISYPDE-SLLEKQNSWTSHFLEQGLSNWS 395 (784)
T ss_pred HHHHHHHHcCCCCCh-hHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999 999999975 4 99988 589999999999999999999 9999999999999999887531
Q ss_pred ---CCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCC------------CcHHHHHHHhhhhHHHHHHHHHHHH
Q 007135 244 ---NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAEHQEELK 308 (616)
Q Consensus 244 ---~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAKlDFn~~Q~~hq~El~ 308 (616)
..++++|++||+|||++|||+++||||||+||++|++++. +|++||||||+|||+||++||+||+
T Consensus 396 ~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~ 475 (784)
T PLN02279 396 KTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELK 475 (784)
T ss_pred ccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1357889999999999999999999999999999998875 8999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhcccc
Q 007135 309 YVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVN 388 (616)
Q Consensus 309 ~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~~ 388 (616)
+++|||+++||.+|||||||++|||||++|++|||+||.+|++|||.+++++++||+||+|||+|||+.||+||+|||.+
T Consensus 476 ~l~rWwke~~L~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~ 555 (784)
T PLN02279 476 QLERWIVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVN 555 (784)
T ss_pred HhCeeHHhcCCccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccc
Confidence 99999999999779999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhh
Q 007135 389 -AMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467 (616)
Q Consensus 389 -~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~ 467 (616)
.++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||+|+.+|+|+.
T Consensus 556 ~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~ 635 (784)
T PLN02279 556 GSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALG 635 (784)
T ss_pred cchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcC--CCCHHHHHHHHHH
Q 007135 468 VILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET--GASESDAREHIRD 545 (616)
Q Consensus 468 ~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~--g~SeEeA~~~i~~ 545 (616)
++++++++++|..+|+++++| .++|+|+++++.|+||+|||+|+++|+++|++ |+|+|||+|+ |+|+|||++++++
T Consensus 636 ~i~l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~ 713 (784)
T PLN02279 636 PIVLPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKG 713 (784)
T ss_pred HHHHHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHH
Confidence 887888888999999999999 68999999999999999999999999999998 9999999987 8999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchhHHHHhhhhccccccCCC
Q 007135 546 LITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLIN 615 (616)
Q Consensus 546 mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~k~~I~~ll~~pi~~~~ 615 (616)
+|+++||+||++++++++ +.+|++|++++||+||+++++|+++||||.+ .||++|++||++||++.+
T Consensus 714 ~Ie~~wKeLn~~~l~~~~--~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l~~ 780 (784)
T PLN02279 714 LIESQRRELLRLVLQEKG--SNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSLQE 780 (784)
T ss_pred HHHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcCCc
Confidence 999999999999996531 1299999999999999999999999999965 799999999999999864
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=9.8e-116 Score=996.73 Aligned_cols=479 Identities=23% Similarity=0.308 Sum_probs=440.2
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHH
Q 007135 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (616)
Q Consensus 88 ~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~a 166 (616)
.++.++|...|++.-++.|+.|+ +++++||+||+||||||+|||++||+++|+++|+.|.++|+||+++....|+++||
T Consensus 285 ~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TA 364 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTA 364 (800)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHH
Confidence 57889999999998778888897 99999999999999999999999999999999999987778898877778999999
Q ss_pred HHHHHHHhcCCCCCccccccccccccccccccc---ccchHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcC-
Q 007135 167 LEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHN- 242 (616)
Q Consensus 167 l~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~- 242 (616)
|+|||||||||+||| |||++|++ +|+|++.+ .+|++|||+|||||||++||| +|||+|+.||++||++.+..+
T Consensus 365 LaFRLLRqhGy~VS~-DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~~ 441 (800)
T PLN02592 365 MGFRLLRLHGHQVSA-DVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGE-KILENAKEFSSKFLREKQEANE 441 (800)
T ss_pred HHHHHHHHcCCCCCh-HHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999 99999998 79998655 799999999999999999999 999999999999999987522
Q ss_pred ---CCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCC-------------cHHHHHHHhhhhHHHHHHHHHH
Q 007135 243 ---NNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDV-------------NQVLVELAKLDFNAVQAEHQEE 306 (616)
Q Consensus 243 ---~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~-------------n~~lLelAKlDFn~~Q~~hq~E 306 (616)
.|+++++|+++|+|||++|||+++||||||+||++|++++++ |+.||||||+|||+||++||+|
T Consensus 442 l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~E 521 (800)
T PLN02592 442 LLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLE 521 (800)
T ss_pred cccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHH
Confidence 134678899999999999999999999999999999987764 9999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHh---
Q 007135 307 LKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVE--- 383 (616)
Q Consensus 307 l~~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~--- 383 (616)
|++++||||++||.+|||||||++|||||++|++|||+||.+|++|||.+++++++||+||+|||+|||+.||++|+
T Consensus 522 L~~lsrWwke~~L~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~ 601 (800)
T PLN02592 522 WDNFQKWYEECNLGEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGY 601 (800)
T ss_pred HHHHhHHHHhcCCCcCCcchhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999996
Q ss_pred -----hccccccccCCc------hhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007135 384 -----RWDVNAMDQLPY------YMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPT 452 (616)
Q Consensus 384 -----rWD~~~~~~lPe------ymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPt 452 (616)
|||.+++++||+ |||+||.||||++||++.++.++||++++++++++|.++|+ +|..+|+
T Consensus 602 ~~~~~rWd~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~--- 672 (800)
T PLN02592 602 KINGRRSDHHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD--- 672 (800)
T ss_pred cccccccCchhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc---
Confidence 899999999988 99999999999999999999999999999999999999998 5777665
Q ss_pred HHhHhhhccccchhhHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhc
Q 007135 453 LEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 531 (616)
Q Consensus 453 leEYl~~~~vS~G~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE 531 (616)
+|+|++.+++++++ .+|..+|+|+++ +|++.++++.++||+||++|+++|+..
T Consensus 673 ---------~s~~~~~ilv~~~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~------------- 726 (800)
T PLN02592 673 ---------GRQGEAELLVKTINLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH------------- 726 (800)
T ss_pred ---------eeccchhhHHHHHHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------
Confidence 55677777788888 459999999854 799999999999999999999998841
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchhHHHHhhhhcccc
Q 007135 532 TG-ASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHP 610 (616)
Q Consensus 532 ~g-~SeEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~k~~I~~ll~~p 610 (616)
.| +|+ ||.+++.+.|+..+++|.+.+++... +.+|++|+++|||++|+ |+|. ||+.|.+|+.||++||+||
T Consensus 727 ~~~~~~-~a~~~~~~~ie~~~~eL~~lvl~~~~--~~vp~~cK~~f~~~~k~--fy~~---~~~~~~~~~~~i~~vl~ep 798 (800)
T PLN02592 727 INTYNP-EEKSKTTPSIESDMQELVQLVLQNSS--DDIDPVIKQTFLMVAKS--FYYA---AYCDPGTINYHIAKVLFER 798 (800)
T ss_pred CCcccH-HHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHH--HHHh---hcCCHHHHHHHHHHHhCCC
Confidence 23 455 89999999999999999999996421 24999999999999996 5555 9999988999999999999
Q ss_pred cc
Q 007135 611 VS 612 (616)
Q Consensus 611 i~ 612 (616)
|+
T Consensus 799 v~ 800 (800)
T PLN02592 799 VA 800 (800)
T ss_pred CC
Confidence 85
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=3e-55 Score=425.49 Aligned_cols=177 Identities=48% Similarity=0.744 Sum_probs=152.9
Q ss_pred CCcCccccCCchhh------hhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 007135 70 WGYDYLQSLSNEYV------VESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIY 143 (616)
Q Consensus 70 W~~~fl~~~~~~~~------~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~ 143 (616)
|||+||+++++.|+ .+.+.+++++||++||+|+.... +|++++|+|||+||||||+|||++||+++|++||
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~---~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASY---PDPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSS---SHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 99999987665554 37889999999999999998863 5899999999999999999999999999999999
Q ss_pred hhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCCcccHHH
Q 007135 144 NERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNI 223 (616)
Q Consensus 144 ~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~~i 223 (616)
+.|...+.+ ..||++|||+|||||||||+||| |||++|+|++|+|+.++.+||+|||+|||||||+++|| +|
T Consensus 78 ~~~~~~~~~------~~dL~~~AL~FRLLRqhGy~VS~-DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE-~i 149 (183)
T PF01397_consen 78 RSWDEDNEE------IDDLYTTALRFRLLRQHGYYVSS-DVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGE-DI 149 (183)
T ss_dssp HTTTTTSHT------SSCHHHHHHHHHHHHHTT----G-GGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT--HH
T ss_pred hhccccccc------cCchhHHHHHHHHHHHcCCcccH-HHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCCh-HH
Confidence 998776422 35999999999999999999999 99999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHc
Q 007135 224 FNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHAL 258 (616)
Q Consensus 224 LdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL 258 (616)
||||+.||++||++.++++ ...+++|+++|+|||
T Consensus 150 LdeA~~Ft~~~L~~~~~~~-~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 150 LDEARAFTTKHLKSLLSNL-SIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCCcHHHHHHHHHhC
Confidence 9999999999999999863 112345999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=1.6e-47 Score=391.69 Aligned_cols=268 Identities=31% Similarity=0.430 Sum_probs=248.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhCC-CCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhccc
Q 007135 288 LVELAKLDFNAVQAEHQEELKYVSRWWRKTGL-GELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVY 366 (616)
Q Consensus 288 lLelAKlDFn~~Q~~hq~El~~lsrWwk~~~l-~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~f 366 (616)
||+|||+|||+||+.||+|++++++||+++|| .+.+.+|+|++.++|+.++.++.|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 69999999999999999999999999999999 55887899999999999999999997777779999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHh
Q 007135 367 DVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGV-HIIPYLKKAWADMCKSFLLEAKWY 445 (616)
Q Consensus 367 D~yGt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~-~~~~~lk~~w~~~~~a~l~EAkW~ 445 (616)
|.+|+.++++.|++++.||++.....+|+++++++.++.++++++...+.+.+++ ++.++|+++|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987788899999999999999999998888777554 478889999999999999999999
Q ss_pred hcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccch
Q 007135 446 SSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAI 525 (616)
Q Consensus 446 ~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V 525 (616)
..|++||++||+++|+.|+|+++++....+++|..++++..+++...|.+.++++.+++|+|||.|++||+.+|+.+|.|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999888888777776666766667889999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 526 QCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 526 ~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=6.5e-45 Score=375.15 Aligned_cols=282 Identities=44% Similarity=0.796 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHH
Q 007135 302 EHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTN 380 (616)
Q Consensus 302 ~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ 380 (616)
.||+|++++++||+++||.. .+++|.+...+|+|+++++|+|+.+..|+++||+++|+|++||.||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999999 55999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhc
Q 007135 381 AVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNA 460 (616)
Q Consensus 381 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~ 460 (616)
+++||+....+.+|+++++++.+++++++++...+.+.+|+....++++.|.++++++++|++|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999998888999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHHHHH
Q 007135 461 WISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAR 540 (616)
Q Consensus 461 ~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~ 540 (616)
..|+|+++++....+++|..+|++.+.+.+....+++.++.+++|+||+.||+||+.+|+.+|+|.|||+++|+|.+||+
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA~ 240 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEAL 240 (284)
T ss_pred eehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998555555888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCcccccHHHHHHHHHHhhhhcccc
Q 007135 541 EHIRDLITATWMKMNSKDGDEN-PDHLLLSNNFIRFAINLARMAQCTY 587 (616)
Q Consensus 541 ~~i~~mI~~~wK~lN~e~l~~~-~~~~~~p~~~~~~~~N~aR~~~~~Y 587 (616)
+++.++++++|+++++...... + .++.+++.+.|++|+.+..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 241 EELRKMIEEAWKELNEEVLKLSSD----VPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999998542 4 68999999999999976554
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=3.6e-32 Score=284.39 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=214.0
Q ss_pred HHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhcccccC-CCHHHHHHHHHHHhhcc
Q 007135 309 YVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVY-GTLDELELFTNAVERWD 386 (616)
Q Consensus 309 ~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~y-Gt~eEl~~ft~ai~rWD 386 (616)
+...|.++.|+..-+.+|++...++|+.++.++.|+++.+|+ +.++++.|+|++||+||.. +++++.+.+++.+.++.
T Consensus 18 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~ 97 (303)
T cd00687 18 EYLEWVLEEMLIPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL 97 (303)
T ss_pred HHHHHHHHcCCCCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc
Confidence 467899999776655699999999998777778899999999 6679999999999999987 59999999999888854
Q ss_pred cc-ccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccch
Q 007135 387 VN-AMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVS 465 (616)
Q Consensus 387 ~~-~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G 465 (616)
.. .... |+...++..++.+++.++.... ++....++++.|.+|+.++++|++|+.+|++||++||+++|+.|+|
T Consensus 98 ~~~~~~~-~~~~~p~~~~~~d~~~r~~~~~----~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g 172 (303)
T cd00687 98 RGDGLDS-PDDATPLEFGLADLWRRTLARM----SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIG 172 (303)
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhccc
Confidence 43 2221 4677888899999998876443 3345689999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhh-hcCCCccchhhhhhcCCCCHHHHHHHHH
Q 007135 466 GPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEV-KRGDVPKAIQCYMHETGASESDAREHIR 544 (616)
Q Consensus 466 ~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~-~rGd~~n~V~cyMkE~g~SeEeA~~~i~ 544 (616)
+.+++..+.+++|..+|+++.+. +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|+|+|++++.
T Consensus 173 ~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~ 251 (303)
T cd00687 173 ADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEAISVVR 251 (303)
T ss_pred ccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHHHHHHH
Confidence 99998889998999999998766 556779999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 007135 545 DLITATWMKMNSKD 558 (616)
Q Consensus 545 ~mI~~~wK~lN~e~ 558 (616)
+++++.++++.+..
T Consensus 252 ~~~~~~~~~f~~~~ 265 (303)
T cd00687 252 DMHNERITQFEELE 265 (303)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.96 E-value=7.1e-30 Score=223.40 Aligned_cols=94 Identities=26% Similarity=0.533 Sum_probs=90.4
Q ss_pred hhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccc-cccCCCCC
Q 007135 516 VKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCT-YQNGDGHT 594 (616)
Q Consensus 516 ~~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~-Y~~~Dg~t 594 (616)
++|||++|+|+|||||||+|+|||++++++||+++||+||+|+|++++ +|.+++++++|+||+++|+ |++|||||
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~----~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t 76 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKD----VPRPVLVRCLNLARLIDVYCYNEGDGFT 76 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHhheecCCCCCC
Confidence 578999999999999999999999999999999999999999999887 9999999999999999999 99999999
Q ss_pred Cchh-HHHHhhhhccccccC
Q 007135 595 IQHK-SKNRVLPLLVHPVSL 613 (616)
Q Consensus 595 ~~~~-~k~~I~~ll~~pi~~ 613 (616)
.++. +|++|++||++|||+
T Consensus 77 ~~~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 77 YPHGKLKDLITSLFFHPLPL 96 (96)
T ss_pred CCcHHHHHHHHHHhccCCCC
Confidence 8765 999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.82 E-value=4e-20 Score=182.23 Aligned_cols=229 Identities=26% Similarity=0.292 Sum_probs=182.3
Q ss_pred hHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHH
Q 007135 335 WALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFD 414 (616)
Q Consensus 335 wa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~ 414 (616)
++++++++|+++..|.+++++.+|++++||++|..++..+.......+ .....|..+...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 456677889888999999999999999999999887666655544333 12335667777788888888887643
Q ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhh
Q 007135 415 VLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPN 494 (616)
Q Consensus 415 ~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~ 494 (616)
.. +....++.+.|.+++.|+..|+.|... ..||++||+.++..++|.. +......+++...++ ..+.+....
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAGL-VGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 345789999999999999999999866 8899999999999998544 444455555655555 344456688
Q ss_pred HHHHHHhHHHHhcCccCchhhhhcC-CCccchhhhhhcCCC------------CHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007135 495 IIRWPSMIFRLANDLATSSDEVKRG-DVPKAIQCYMHETGA------------SESDAREHIRDLITATWMKMNSKDGDE 561 (616)
Q Consensus 495 l~~~~~~I~RL~NDI~S~kkE~~rG-d~~n~V~cyMkE~g~------------SeEeA~~~i~~mI~~~wK~lN~e~l~~ 561 (616)
+....+.+.+|.||+.++.+|.++| +..|.+.++|+++|+ +.++|.+++..+++++|+++++.....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999996 678999999999998 889999999999999999999987543
Q ss_pred CCCcccccHHHHHHHHHHhh
Q 007135 562 NPDHLLLSNNFIRFAINLAR 581 (616)
Q Consensus 562 ~~~~~~~p~~~~~~~~N~aR 581 (616)
.+ .++.+++.+.+++|
T Consensus 228 ~~----~~~~~~~~~~~~~~ 243 (243)
T cd00385 228 PD----VPRALLALALNLYR 243 (243)
T ss_pred HH----HHHHHHHHHHHHhC
Confidence 22 46778887777654
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.38 E-value=0.0011 Score=71.27 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=112.6
Q ss_pred CccCCCcc-chhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHH
Q 007135 339 EVWEPQFG-YCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417 (616)
Q Consensus 339 ~~feP~~s-~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k 417 (616)
..| |..+ ..++.++-..++++++||.++.. .+++..|-+-+-. ..+ .|. + +++.++++-.++.+
T Consensus 76 ~~y-~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~---Q~~---p----~L~~~~~~L~~~~~ 140 (376)
T PF06330_consen 76 YCY-PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQP---QKH---P----LLDGFASLLREMWR 140 (376)
T ss_dssp HHS-TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------SS---H----HHHHHHHHHHHHHT
T ss_pred eec-CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCC---CCC---H----HHHHHHHHHHHHHH
Confidence 344 5444 45668888889999999998765 3666666654433 111 111 2 23334444444555
Q ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhh---
Q 007135 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPN--- 494 (616)
Q Consensus 418 ~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~--- 494 (616)
.-|+.+..-+.++--+++.+...|.+.. +-.|.-..|-..-+.=+|.....+...+ .....++ ......
T Consensus 141 ~fgpf~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiF--Pk~~fpe----~~~~~~y~~ 212 (376)
T PF06330_consen 141 HFGPFCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIF--PKALFPE----VEYFIQYTP 212 (376)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT----TTTS-T----TTTHHHHHH
T ss_pred HcchHHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeec--ccccCCh----HHHHHHHHH
Confidence 5677778888999999999999997643 2234333343333444555444332222 2222222 122333
Q ss_pred HHHHHHhHHHHhcCccCchhhhh-cCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 007135 495 IIRWPSMIFRLANDLATSSDEVK-RGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKD 558 (616)
Q Consensus 495 l~~~~~~I~RL~NDI~S~kkE~~-rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e~ 558 (616)
.+--....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+..-.-++-+++.+..
T Consensus 213 AIpdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL 277 (376)
T PF06330_consen 213 AIPDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVL 277 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444559999999999977 78899999877777899999999987665555656655544
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.23 E-value=0.0033 Score=66.65 Aligned_cols=191 Identities=15% Similarity=0.032 Sum_probs=114.6
Q ss_pred ccchhh-hhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccc
Q 007135 345 FGYCRR-MSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHI 423 (616)
Q Consensus 345 ~s~~Rl-~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~ 423 (616)
.|..=+ .++-..+.++++||.=|.. .+.+..|.+-+.. +.+ ..-| + +..+++.-..+..--|+.+
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G~~-qkhP-----~----l~~v~~~l~~~lr~fGpF~ 146 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--GRE-QAHP-----W----WALVNEHFPNVLRHFGPFC 146 (357)
T ss_pred CCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--CCC-CCCc-----H----HHHHHHHHHHHHHHhhhhh
Confidence 444333 5556667788999997654 2455555554443 111 1112 1 2222222223333456677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHH---
Q 007135 424 IPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPS--- 500 (616)
Q Consensus 424 ~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~--- 500 (616)
..-+.++--+++.+.+.|... .+.-|.-.+|-...+.=+|.+...+... -|++.|.-..-+..+..+..
T Consensus 147 s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi------FPk~~FpE~~~~~qi~~AIp~~~ 218 (357)
T cd00686 147 SLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL------WPKEQFNERSLFLEITSAIAQME 218 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe------cchhhCchHhhHHHhhHHHHHHH
Confidence 777888889999999999663 3446766666666666666554433222 24443322222333333333
Q ss_pred hHHHHhcCccCchhhhhc-CCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 007135 501 MIFRLANDLATSSDEVKR-GDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSK 557 (616)
Q Consensus 501 ~I~RL~NDI~S~kkE~~r-Gd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e 557 (616)
...-++|||.||=||--. ++..|.|.-|.+.+|+|..+|.+.+..-.-.+.+++.+-
T Consensus 219 ~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V 276 (357)
T cd00686 219 NWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (357)
T ss_pred HHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344589999999999854 456788888888899999999997766555566666554
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=88.63 E-value=6.8 Score=39.24 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccc-cchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHh
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWI-SVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSM 501 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~v-S~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 501 (616)
....+.+...+++.|...+..|... ..||.++|++.... |.+.....+..-.+++.. +++.. ....++.+..++
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA-DDEQA---EALKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc-CHHHH---HHHHHHHHHHHH
Confidence 3456778889999999999888643 57999999999988 655543333333323332 33332 234567788889
Q ss_pred HHHHhcCccCchhhh----------hcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 007135 502 IFRLANDLATSSDEV----------KRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSK 557 (616)
Q Consensus 502 I~RL~NDI~S~kkE~----------~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e 557 (616)
..-+.||+..+.... ++|.. +...+++ .+.+.+..+++++.+...
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~~ 215 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEAL 215 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHhC
Confidence 999999998876654 34433 4444444 556666666666665543
No 13
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=86.50 E-value=6.5 Score=40.39 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=100.1
Q ss_pred HhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHH----HHHHHHHHHhhccccccccCCchhHHHHHHHhh
Q 007135 331 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLD----ELELFTNAVERWDVNAMDQLPYYMKLCFLVLHN 406 (616)
Q Consensus 331 e~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~e----El~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~ 406 (616)
.++|+++-.. | ...|-.+.-+-.+.-.+||+-|...... -|+-+-+++...-.+..+..+....++..++..
T Consensus 6 ~sf~~a~~~l--P--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~ 81 (267)
T PF00494_consen 6 RSFYLASLLL--P--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALAD 81 (267)
T ss_dssp HHHHHHHTTS-----HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHH
T ss_pred ccHHHHHHHC--C--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHH
Confidence 3455555433 3 4556666668888889999999765322 244455555542211111223333456666654
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCCh-HH
Q 007135 407 STNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTK-EA 485 (616)
Q Consensus 407 ~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~-e~ 485 (616)
+..... --++.+.++++|+.+.. ....++|++|+......+.|....++...++.. -++ +.
T Consensus 82 ~~~~~~-------------l~~~~l~~li~~~~~dl---~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~~~~ 143 (267)
T PF00494_consen 82 LVRRYG-------------LPREPLLELIDGMEMDL---EFTPYETFADLERYCYYVAGSVGLLLLQLLGAH--DPDEAA 143 (267)
T ss_dssp HHCCSH-------------HHHHHHHHHHHHHHHCT---T-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSHHHH
T ss_pred HHHHHh-------------hhHHHHHHHHHHhcccc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc--cchhhH
Confidence 444321 33455667777765333 334578999999998888887666555555442 122 23
Q ss_pred HHhhhhhhhHHHHHHhHHHHhcCccCchhh-hhcCC--CccchhhhhhcCCCCHHHHHHH----------HHHHHHHHHH
Q 007135 486 LQFLEEYPNIIRWPSMIFRLANDLATSSDE-VKRGD--VPKAIQCYMHETGASESDAREH----------IRDLITATWM 552 (616)
Q Consensus 486 ~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE-~~rGd--~~n~V~cyMkE~g~SeEeA~~~----------i~~mI~~~wK 552 (616)
.+. ....+..+-|.|=|...... ..+|- .+.- .|.++|+|.++-... +..++..+..
T Consensus 144 ~~~-------a~~lG~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~ 213 (267)
T PF00494_consen 144 RDA-------ARALGRALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARA 213 (267)
T ss_dssp HHH-------HHHHHHHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 222 23333333333333334444 44553 3332 356789887765332 4555555554
Q ss_pred HHHHh
Q 007135 553 KMNSK 557 (616)
Q Consensus 553 ~lN~e 557 (616)
.+.+.
T Consensus 214 ~l~~a 218 (267)
T PF00494_consen 214 HLDEA 218 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 14
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=82.79 E-value=43 Score=34.45 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=101.8
Q ss_pred hHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCH-----HHHHHHHHHHhhccccccccCCchhHHHHHHHhh
Q 007135 332 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTL-----DELELFTNAVERWDVNAMDQLPYYMKLCFLVLHN 406 (616)
Q Consensus 332 ~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~-----eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~ 406 (616)
+|++++-..+ ...|..+.-+-.+.-.+||+=|..... ..|+-+-+++..-... .-|. -++..+|..
T Consensus 13 sf~~a~~~lp----~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~~~--~pv~~al~~ 83 (265)
T cd00683 13 SFYLASRLLP----PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GAPT--HPVLRALAD 83 (265)
T ss_pred cHHHHHHhCC----HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CCCC--ChHHHHHHH
Confidence 4555554433 345555555777888899999975422 2344444444431110 0111 145566655
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHH
Q 007135 407 STNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEAL 486 (616)
Q Consensus 407 ~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~ 486 (616)
+..+. + --++.+.+++.++..... ....||++|.......+.|+-..++...+ |..-+++..
T Consensus 84 ~~~~~--------~-----l~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~--~~~~~~~~~ 145 (265)
T cd00683 84 LARRY--------G-----IPREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVF--GASSDEAAL 145 (265)
T ss_pred HHHHc--------C-----CCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCCCChHHH
Confidence 55421 1 123556777777754443 45678998888877777776544444444 321122322
Q ss_pred HhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--CccchhhhhhcCCCCHHHH---------HHHHHHHHHHHHHHHH
Q 007135 487 QFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--VPKAIQCYMHETGASESDA---------REHIRDLITATWMKMN 555 (616)
Q Consensus 487 e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--~~n~V~cyMkE~g~SeEeA---------~~~i~~mI~~~wK~lN 555 (616)
......-.-+.+++++ .|+. ...++|- .+.-+ |.++|+|.|+- ...+..+++.+.+-+.
T Consensus 146 ~~A~~lG~Alqltnil----Rdv~---eD~~~gR~YlP~d~---l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 215 (265)
T cd00683 146 ERARALGLALQLTNIL----RDVG---EDARRGRIYLPREE---LARFGVTLEDLLAPENSPAFRALLRRLIARARAHYR 215 (265)
T ss_pred HHHHHHHHHHHHHHHH----HHHH---HHHccCCCcCCHHH---HHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2211122222333322 2332 2234442 33322 56678877553 2445566666655444
Q ss_pred HhhcCCCCCcccccHHHHHHHHHHhh
Q 007135 556 SKDGDENPDHLLLSNNFIRFAINLAR 581 (616)
Q Consensus 556 ~e~l~~~~~~~~~p~~~~~~~~N~aR 581 (616)
...-.... +|....-.++-++.
T Consensus 216 ~a~~~~~~----lp~~~~~~~~~~~~ 237 (265)
T cd00683 216 EALAGLAA----LPRRSRFCVRAAAM 237 (265)
T ss_pred HHHHhHHh----CCHhhHHHHHHHHH
Confidence 43321122 67555544444443
No 15
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=81.85 E-value=49 Score=34.24 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=65.1
Q ss_pred HhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccC-CCHHH----HHHHHHHHhh-ccccccccCCchhHHHHHHH
Q 007135 331 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY-GTLDE----LELFTNAVER-WDVNAMDQLPYYMKLCFLVL 404 (616)
Q Consensus 331 e~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~y-Gt~eE----l~~ft~ai~r-WD~~~~~~lPeymk~~f~aL 404 (616)
++|+|+.-..+ ...|..+.-+-.+.=++||+=|.. ++.++ |+.+-++++. ... -|. .++..+|
T Consensus 6 ~sf~~a~~~lp----~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g-----~~~--~pv~~aL 74 (266)
T TIGR03464 6 ENFPVASLLLP----ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSG-----EPA--APVFVAL 74 (266)
T ss_pred CcHHHHHHhCC----HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCC-----CCC--ChHHHHH
Confidence 35566665444 334555555667778899999975 45443 3333334332 111 121 2455666
Q ss_pred hhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHH
Q 007135 405 HNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT 475 (616)
Q Consensus 405 ~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~ 475 (616)
..++.+. +.. ++.+.+++.++.... .....+|++|.......+.|+-..++...+
T Consensus 75 ~~~~~~~--------~l~-----~~~~~~li~~~~~Dl---~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~ 129 (266)
T TIGR03464 75 ARTVQRH--------GLP-----IEPFLDLLDAFRQDV---VVTRYATWAELLDYCRYSANPVGRLVLDLY 129 (266)
T ss_pred HHHHHHc--------CCC-----hHHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhHHHHHHHHHHHc
Confidence 6555532 211 234556666654322 234567999988888888876555554444
No 16
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=78.80 E-value=52 Score=34.01 Aligned_cols=187 Identities=11% Similarity=0.161 Sum_probs=92.3
Q ss_pred hHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHH----HHHHHHHhhccccccccCCchhHHHHHHHhhh
Q 007135 332 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL----ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS 407 (616)
Q Consensus 332 ~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl----~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~ 407 (616)
+|++++-..+ ...|-.+.-+-.+.-.+||+=|..++.++- +-+-+++..-.. .-|. .++..++..+
T Consensus 7 sF~~a~~~lp----~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~----g~~~--~pv~~al~~~ 76 (266)
T TIGR03465 7 SFYYGMRLLP----PERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYA----GAPS--HPVARALADP 76 (266)
T ss_pred cHHHHHHHCC----HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhC----CCCC--ChHHHHHHHH
Confidence 5555555444 345555556777888899999975444332 222223322111 1121 2455555544
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHH
Q 007135 408 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQ 487 (616)
Q Consensus 408 ~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e 487 (616)
+... +. -+..+.++++++.+.. .....+|++|+......+.|.-..++...+ |.. ++....
T Consensus 77 ~~~~--------~l-----~~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll--g~~-~~~~~~ 137 (266)
T TIGR03465 77 ARRF--------DL-----PQEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIF--GAT-DARTLE 137 (266)
T ss_pred HHHc--------CC-----CHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCC-ChhHHH
Confidence 4321 11 1244677777765433 234568999988888777776544444443 421 222222
Q ss_pred hhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--CccchhhhhhcCCCCHH---------HHHHHHHHHHHHHHHHHHH
Q 007135 488 FLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--VPKAIQCYMHETGASES---------DAREHIRDLITATWMKMNS 556 (616)
Q Consensus 488 ~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--~~n~V~cyMkE~g~SeE---------eA~~~i~~mI~~~wK~lN~ 556 (616)
.....-.-+.+++ ++.|+ .....+|- .+-- .|.++|+|.+ ...+.+..+++.+..-+.+
T Consensus 138 ~a~~lG~Alqltn----ilRdv---~eD~~~gR~ylP~~---~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~ 207 (266)
T TIGR03465 138 YAHHLGRALQLTN----ILRDV---GEDARRGRIYLPAE---ELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAE 207 (266)
T ss_pred HHHHHHHHHHHHH----HHHHh---HHHHhCCCeecCHH---HHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2111122222222 22233 23344553 2221 2456788766 4455566677766655544
Q ss_pred h
Q 007135 557 K 557 (616)
Q Consensus 557 e 557 (616)
.
T Consensus 208 a 208 (266)
T TIGR03465 208 A 208 (266)
T ss_pred H
Confidence 4
No 17
>PLN02632 phytoene synthase
Probab=72.78 E-value=82 Score=33.93 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=58.1
Q ss_pred hhhhhhhchhhhhhhhcccccCCCH----HHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccc
Q 007135 348 CRRMSTKANALITTIDDVYDVYGTL----DELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHI 423 (616)
Q Consensus 348 ~Rl~laK~~~li~viDD~fD~yGt~----eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~ 423 (616)
.|..+.-+-.|.-.+||+=|..... ..|+.+-+.+..- ...-|. .++..++.+++.+..
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~----~~g~~~--~pv~~aL~~~~~~~~----------- 136 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDL----FDGRPY--DMLDAALADTVSKFP----------- 136 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHH----hCCCCC--ChHHHHHHHHHHHCC-----------
Confidence 4554455777888899999964322 2333333333331 111121 145566665554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH
Q 007135 424 IPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL 476 (616)
Q Consensus 424 ~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~ 476 (616)
--++.+.+++.++..... ....+|++|+......+.|+--.++...++
T Consensus 137 --L~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg 184 (334)
T PLN02632 137 --LDIQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMG 184 (334)
T ss_pred --CChHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 012445677777654332 345679999888888777765444444443
No 18
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=67.15 E-value=1.2e+02 Score=32.47 Aligned_cols=88 Identities=9% Similarity=0.141 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.+...+.+....++.+-+.+..|.. ...+|+++|++.-..=+|..+-.+ +..| +-...+++..+. .-++-+..+
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~-~~~ga~~ag~~~~~~~~---l~~~G~~lG 207 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAAS-SKAAAVLSDVPSQVAND---LYEYGKHLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHH-HHHHHHHcCcCHHHHHH---HHHHHHHHH
Confidence 3556777888888999888877643 345799999987666555443222 1111 111235554333 456778889
Q ss_pred hHHHHhcCccCchh
Q 007135 501 MIFRLANDLATSSD 514 (616)
Q Consensus 501 ~I~RL~NDI~S~kk 514 (616)
+..-+.||+..+..
T Consensus 208 ~aFQi~DDild~~~ 221 (322)
T TIGR02749 208 LAFQVVDDILDFTG 221 (322)
T ss_pred HHHHHHHHhccCCC
Confidence 99999999988753
No 19
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=66.34 E-value=62 Score=33.25 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.+...+.+.....+.|-..+..|... ..||.++|++....-+|.....+....+ ++. .+++..+ ..-++-+..+
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~---~l~~~g~~lG 182 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAE---ALKRFGRNLG 182 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHH---HHHHHHHHHH
Confidence 45667778888899999989888643 5799999999988777765433222211 122 2344332 3456778888
Q ss_pred hHHHHhcCccCchhhhh-----------cCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 501 MIFRLANDLATSSDEVK-----------RGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 501 ~I~RL~NDI~S~kkE~~-----------rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
+..-+.||+..+..... .|. .+.+.+|.. .+.+...++++++.+..
T Consensus 183 ~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk-~T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 183 LAFQIQDDILDLFGDPETLGKPVGSDLREGK-CTLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHHhhcccCChHHHCCCcchHHHcCC-chHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 88889999877654322 122 244434433 55666777777766554
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=65.79 E-value=83 Score=35.09 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.+...+.+...+++.+-+.+..+.. ..-+|.++|++....=+|..+..+...-+ ++ ..+++..+. ..++-+..+
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~galla-ga~~~~~~~---l~~fG~~LG 301 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFS-GVDSSVKEQ---MYEYGKNLG 301 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 3456777778888888877877754 44579999998876666554322211111 12 235554333 456778888
Q ss_pred hHHHHhcCccCchh
Q 007135 501 MIFRLANDLATSSD 514 (616)
Q Consensus 501 ~I~RL~NDI~S~kk 514 (616)
+..-+.||+..+..
T Consensus 302 iAFQI~DDiLD~~~ 315 (416)
T PLN02857 302 LAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHHhhcC
Confidence 88899999988753
No 21
>PLN02890 geranyl diphosphate synthase
Probab=60.65 E-value=1.7e+02 Score=32.79 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.++..+.++...++.|-+.+..|.. ...+|+++|++....-+|..+..+... ..++ ..+++..+. .-.+-+..+
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAila-ga~~~~~~~---l~~fG~~lG 301 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILA-GQTAEVAVL---AFEYGRNLG 301 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHc-CcCHHHHHH---HHHHHHHHH
Confidence 4567888889999999999998864 456899999987665555543222111 1122 235565444 346778888
Q ss_pred hHHHHhcCccCchhh
Q 007135 501 MIFRLANDLATSSDE 515 (616)
Q Consensus 501 ~I~RL~NDI~S~kkE 515 (616)
+..-+.||+..+.-.
T Consensus 302 lAFQI~DDiLD~~g~ 316 (422)
T PLN02890 302 LAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHhhcCC
Confidence 889999999887544
No 22
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=53.71 E-value=3.1e+02 Score=29.36 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHH--HHHHhCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH--AYTLIANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.....+.+....++.+-..+..|.... +|.++|+.+-..=+|..+..+. .-...|. +++..+. .-.+-+..
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~--~~~~~~~---l~~~g~~l 206 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGA--DEELLEA---LEDYGRNL 206 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHH---HHHHHHHh
Confidence 456778888999999998888876544 9999999987766665443221 1111232 3555444 46678888
Q ss_pred HhHHHHhcCccCchhhhh-cCC---------CccchhhhhhcCC
Q 007135 500 SMIFRLANDLATSSDEVK-RGD---------VPKAIQCYMHETG 533 (616)
Q Consensus 500 ~~I~RL~NDI~S~kkE~~-rGd---------~~n~V~cyMkE~g 533 (616)
++..-+.||+..+..+.+ -|. ..+.+.+|.-+.+
T Consensus 207 GlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~ 250 (322)
T COG0142 207 GLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKA 250 (322)
T ss_pred hHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcC
Confidence 999999999988876532 232 2466666666654
No 23
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=48.71 E-value=3.4e+02 Score=28.98 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.++...++.|-..+..|.. ...+|.++|++.-..-+|..+..+ +..| ++ ..+++..+. .-++-+..
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~a-g~~~~~~~~---l~~~g~~l 202 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIAS-GANEAIVKK---LYWFGYYV 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 3456778888889999888887743 345799999988766666543222 2222 12 124443333 35677788
Q ss_pred HhHHHHhcCccCchh
Q 007135 500 SMIFRLANDLATSSD 514 (616)
Q Consensus 500 ~~I~RL~NDI~S~kk 514 (616)
++..-+.||+..+..
T Consensus 203 G~aFQI~DDilD~~~ 217 (319)
T TIGR02748 203 GMSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHHccC
Confidence 888999999977653
No 24
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=48.24 E-value=13 Score=35.79 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=25.6
Q ss_pred hcCCCccchhhhhhcC-CCCHHHHHHHHHHH
Q 007135 517 KRGDVPKAIQCYMHET-GASESDAREHIRDL 546 (616)
Q Consensus 517 ~rGd~~n~V~cyMkE~-g~SeEeA~~~i~~m 546 (616)
.||-.+..|.||+-++ +.|.|+|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4566788999999887 99999999999873
No 25
>CHL00151 preA prenyl transferase; Reviewed
Probab=42.40 E-value=4.4e+02 Score=28.14 Aligned_cols=87 Identities=7% Similarity=0.155 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHHHh
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWPSM 501 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~~ 501 (616)
+...+.+....++.+-+.+..|.. ..-+|.++|+..-..=+|..+-.+...- .++. .+++..+. .-.+-+..++
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~G~~lG~ 209 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD-ADEKDHND---FYLYGKHLGL 209 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 456777888888888877766642 3457899999975555554332221111 1222 34444333 4567788899
Q ss_pred HHHHhcCccCchh
Q 007135 502 IFRLANDLATSSD 514 (616)
Q Consensus 502 I~RL~NDI~S~kk 514 (616)
..-+.||+..+.-
T Consensus 210 aFQi~DDilD~~~ 222 (323)
T CHL00151 210 AFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHhhccc
Confidence 9999999987754
No 26
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=42.38 E-value=4.8e+02 Score=28.29 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=60.0
Q ss_pred hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 477 IANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 477 ~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
+...++++..+.+. ....-+.+-+-.|++-+...+.+.+.||. |.|..| -+.+++.+.+...++++-+...+
T Consensus 202 ~~p~~t~~~a~~i~--~aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY-----~~~~~~~~Rl~~f~~~A~~~~~~ 273 (330)
T PF10776_consen 202 ADPDLTPEDAEKIK--DAYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYY-----PDEEEMEERLKYFVEKALEQASR 273 (330)
T ss_pred cCCCCCHHHHHHHH--HcccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeC-----CCHHHHHHHHHHHHHHHHHHHHh
Confidence 45668888777753 33333445555566666665666666665 988544 36889999999999999877654
Q ss_pred hhcCCCCCcccccHHHHHHHHHHhhhhccccccCCC
Q 007135 557 KDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDG 592 (616)
Q Consensus 557 e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg 592 (616)
+|.+-....++ |.+--||-.++.
T Consensus 274 -----------Lp~~~fHr~iv--~GLla~YLSD~K 296 (330)
T PF10776_consen 274 -----------LPYPKFHRMIV--RGLLAMYLSDPK 296 (330)
T ss_pred -----------CCCchHHHHHH--HHHHHHHhCCHh
Confidence 44443333333 555567865443
No 27
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=41.38 E-value=20 Score=35.71 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=27.7
Q ss_pred HhcCccCchhhhhcC-CCccchhhhhhcCCCCHHHHHHHHHHH
Q 007135 505 LANDLATSSDEVKRG-DVPKAIQCYMHETGASESDAREHIRDL 546 (616)
Q Consensus 505 L~NDI~S~kkE~~rG-d~~n~V~cyMkE~g~SeEeA~~~i~~m 546 (616)
|--++..+|+..+.- .+.-+=.+.|+++|+||+||..+++++
T Consensus 130 L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 130 LRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444555555544321 122333579999999999999999885
No 28
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=38.82 E-value=22 Score=27.89 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred CccchhhhhhcCCCCHHHHHHHHHHHHH
Q 007135 521 VPKAIQCYMHETGASESDAREHIRDLIT 548 (616)
Q Consensus 521 ~~n~V~cyMkE~g~SeEeA~~~i~~mI~ 548 (616)
+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4456788999999999999998887433
No 29
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=34.48 E-value=27 Score=23.92 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=14.6
Q ss_pred hhhhcCCCCHHHHHHHHH
Q 007135 527 CYMHETGASESDAREHIR 544 (616)
Q Consensus 527 cyMkE~g~SeEeA~~~i~ 544 (616)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 689999999999766554
No 30
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=31.00 E-value=48 Score=28.75 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCccccccc-------cccccccccccccc----ch
Q 007135 135 IKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSL-------FMDEKGKLKSCLGD----DI 203 (616)
Q Consensus 135 I~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~-------F~d~~G~F~~~l~~----dv 203 (616)
|+.+++++.+....+| +|+-. ...|...|+..-..|+.+|-.... +..++ -..++|.|...-.. .+
T Consensus 1 i~~~~~~l~~~Q~~dG-~W~~~-~~~~~~~t~~~~~al~~~~~~~~~-~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~ 77 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDG-SWGYN-WGSDVFVTAALILALAAAGDAAVD-EAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTA 77 (109)
T ss_dssp ------------------------------------------TS-SS-BSSHHHHHHHHH---TTS--S-TS--HHHHHH
T ss_pred Cccccccccccccccc-ccccc-ccccccccccccccccccCCCCcH-HHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHH
Confidence 6778888877655555 45433 336788888888999998865454 44433 33567888654211 12
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHHHhHHH
Q 007135 204 KGILALYEAAYLLVEEESNIFNEAINFTTTH 234 (616)
Q Consensus 204 ~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~ 234 (616)
.+ +.+.-.+... +.+ +-++++..|-.++
T Consensus 78 ~~-~~~l~~~~~~-~~~-~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 78 AA-IAALALAGVY-PDD-EAVERGLEWILSH 105 (109)
T ss_dssp HH-HHHHHHHHTT---H-HHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCC-CCC-HHHHHHHHHHHHc
Confidence 33 3332222222 344 6788888886665
No 31
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=28.50 E-value=62 Score=28.75 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHc
Q 007135 203 IKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHAL 258 (616)
Q Consensus 203 v~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL 258 (616)
+.|+++|||-|-++--=| ++||+- ++.| .++++|+..|-...
T Consensus 1 v~~yYElYRrs~ig~~L~-dalD~l-----------is~g--~isp~lam~vLetF 42 (113)
T COG5123 1 VPGYYELYRRSMIGKVLE-DALDEL-----------ISAG--VISPNLAMHVLETF 42 (113)
T ss_pred CccHHHHHHHHHHHHHHH-HHHHHH-----------HhcC--CcCHHHHHHHHHHh
Confidence 468999999998884445 555553 3432 46777776654443
No 32
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.23 E-value=28 Score=36.01 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=96.2
Q ss_pred CccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhh-cc----------ccccccCCchhHHHHHHHhhh
Q 007135 339 EVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVER-WD----------VNAMDQLPYYMKLCFLVLHNS 407 (616)
Q Consensus 339 ~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~r-WD----------~~~~~~lPeymk~~f~aL~~~ 407 (616)
.+|+|.|..+++ +.++.+|+++||-+=|- .+-+..+..-+.| .. +..++.|++..|+= +=.++
T Consensus 87 ~~Fd~s~D~e~i-F~~~gALifvIDaQddy---~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie--tqrdI 160 (347)
T KOG3887|consen 87 DFFDPSFDYEMI-FRGVGALIFVIDAQDDY---MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE--TQRDI 160 (347)
T ss_pred ccCCCccCHHHH-HhccCeEEEEEechHHH---HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh--hHHHH
Confidence 578999999966 68899999999855331 3344444444554 22 23466788876542 22333
Q ss_pred HHHHHHHHHHhcCc---cchHHHHHHH-HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchh-----------------
Q 007135 408 TNEMAFDVLKKQGV---HIIPYLKKAW-ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSG----------------- 466 (616)
Q Consensus 408 ~~ei~~~~~k~~g~---~~~~~lk~~w-~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~----------------- 466 (616)
..+..+++. ..|- -+.-|+.-.+ ...++|+-+-++- --..+||+|--|.+=..+++.
T Consensus 161 ~qr~~d~l~-d~gle~v~vsf~LTSIyDHSIfEAFSkvVQk-LipqLptLEnlLnif~s~S~ieKafLFDv~SKIYiaTD 238 (347)
T KOG3887|consen 161 HQRTNDELA-DAGLEKVQVSFYLTSIYDHSIFEAFSKVVQK-LIPQLPTLENLLNIFISNSKIEKAFLFDVLSKIYIATD 238 (347)
T ss_pred HHHhhHHHH-hhhhccceEEEEEeeecchHHHHHHHHHHHH-HhhhchhHHHHHHHHhhccchhhhhhhhhhheeEEecC
Confidence 333322221 1221 0111111111 1122222222221 135678888776654444332
Q ss_pred -hHHHHHHHHHhCCC--CChHHHHh--h---hhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHH
Q 007135 467 -PVILLHAYTLIANP--PTKEALQF--L---EEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537 (616)
Q Consensus 467 -~~ll~~~~~~~G~~--l~~e~~e~--~---~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeE 537 (616)
.|+-..+|-.|.+. ++-+...- + ..-+..-+.++.+.||.|+..-|-+|..++ =+..|.|++.|.-.+
T Consensus 239 S~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~---LALV~i~re~~~e~~ 314 (347)
T KOG3887|consen 239 SSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKF---LALVCIVREDGFEKK 314 (347)
T ss_pred CCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhh---eEEEEEEccCCcccc
Confidence 12222223222221 11110000 0 112446677788999999999999999887 345699999885443
No 33
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=27.89 E-value=3.4e+02 Score=32.08 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccc-------ccc
Q 007135 115 QLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGT-------LSL 187 (616)
Q Consensus 115 ~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dv-------f~~ 187 (616)
...++-.|-+.|.+.. ...|+.+++++-+.-..+|.++||-. ..++|.|+..-..|+..|..+.. .+ +.+
T Consensus 454 Ta~~l~al~~~g~~~~-~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~-~~i~rAv~wL~~ 530 (635)
T TIGR01507 454 TARVLECLGSFGYDDA-WPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTRE-PYIQKALAWLES 530 (635)
T ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCccc-HHHHHHHHHHHH
Confidence 4566677777776655 77899999999886555664445533 46799999999999999987765 43 334
Q ss_pred cccccccccccc----------------ccchHHHHHHHHhhccCCcccHHHHHHHHHHhH
Q 007135 188 FMDEKGKLKSCL----------------GDDIKGILALYEAAYLLVEEESNIFNEAINFTT 232 (616)
Q Consensus 188 F~d~~G~F~~~l----------------~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~ 232 (616)
-..++|.|.++. +.-.-.|+.|..|-+. +. ..+++|..|=.
T Consensus 531 ~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~---~~-~~I~rav~~L~ 587 (635)
T TIGR01507 531 HQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA---ES-EAARRGVQYLV 587 (635)
T ss_pred hcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC---Cc-HHHHHHHHHHH
Confidence 456678885431 1233468999887542 33 56778775533
No 34
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=26.86 E-value=70 Score=28.68 Aligned_cols=63 Identities=13% Similarity=0.299 Sum_probs=37.1
Q ss_pred hhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 007135 493 PNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASE---SDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 493 p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~Se---EeA~~~i~~mI~~~wK~lN~ 556 (616)
.++.++-..+.+.+||+.+.+-+-..-+..=.+.+.| -+++|. -|..++++.+++.+|..+.+
T Consensus 25 D~~~rLN~ev~~~~~~Ly~~~G~t~EeeA~lCLaLLm-GYnat~yd~geke~~~Q~vL~Rs~~vL~~ 90 (106)
T PF06603_consen 25 DDFSRLNKEVYEQSNDLYSQHGSTPEEEANLCLALLM-GYNATIYDNGEKEEKKQEVLDRSWEVLDK 90 (106)
T ss_pred HHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hccchhhhCccHHHHHHHHHHHHHHHHHh
Confidence 3577888899999999988643322211111122222 233321 23455789999999977664
No 35
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=21.21 E-value=1.1e+03 Score=25.61 Aligned_cols=202 Identities=13% Similarity=0.115 Sum_probs=94.5
Q ss_pred HhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccC-CCH----HHHHHHHHHHhh--ccccccccCCchhHHHHHH
Q 007135 331 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY-GTL----DELELFTNAVER--WDVNAMDQLPYYMKLCFLV 403 (616)
Q Consensus 331 e~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~y-Gt~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~f~a 403 (616)
.+|++++-... ...|..++-.-.+.=.+||+=|.. ... +.++.|.+.+.. |..+... -| ...+
T Consensus 14 rSF~~ai~~Lp----~~lR~aV~~~Yl~cR~~DdIeDd~~~~~~~kl~~l~~~~~~l~~~~~~~~~~~-~~-----~~~~ 83 (336)
T TIGR01559 14 RSFAAVIQELP----PELRNAVCIFYLVLRALDTVEDDMTISVDKKIPLLRDFHEKIYDPDWRFTESD-NE-----KDRQ 83 (336)
T ss_pred ccHHHHHHHcC----HHHHHHHHHHHHHHHhccccccCCCCCHHHHHHHHHHHHHHHhccCcccCCCC-Ch-----hhHH
Confidence 35556655444 234556666777888899999853 222 233556666543 4221110 12 1223
Q ss_pred HhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCC--CCHHhHhhhccccchh-hHHHHHHHHHhCCC
Q 007135 404 LHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYI--PTLEEYMDNAWISVSG-PVILLHAYTLIANP 480 (616)
Q Consensus 404 L~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~i--PtleEYl~~~~vS~G~-~~ll~~~~~~~G~~ 480 (616)
|...+......... -......-+++..+++..|+ +.+...... +|++||...-....|+ ..+++..+...|..
T Consensus 84 L~~~~~~v~~~~~~-l~~~~~~~I~~~~~~M~~GM---a~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~~~~~ 159 (336)
T TIGR01559 84 VLDDFPVVSLEFLK-LKPKYQEVIADITRRMGNGM---ADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGFE 159 (336)
T ss_pred HHHhchHHHHHHHh-cCHHHHHHHHHHHHHHHHHH---HHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhhcCCC
Confidence 33333322211110 01112233444445555666 233322222 8998888887777774 44444444333322
Q ss_pred CCh--HHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcC--CCccchhhhhhcCCCC---------HHHHHHHHHHHH
Q 007135 481 PTK--EALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRG--DVPKAIQCYMHETGAS---------ESDAREHIRDLI 547 (616)
Q Consensus 481 l~~--e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rG--d~~n~V~cyMkE~g~S---------eEeA~~~i~~mI 547 (616)
-+. +..+...+.-..++++|++=-...|+ .+| ..+--+ +..+|++ .+.+..-+..|+
T Consensus 160 ~~~~~~~~~~A~~lG~aLQlTNIlRDv~ED~-------~~GR~YlP~e~---l~~~g~~~~dl~~~~~~~~~~~~l~~lv 229 (336)
T TIGR01559 160 DPSLGESEALSNSMGLFLQKTNIIRDYLEDI-------NEGRMFWPREI---WSKYAKKLGDFKKPENSDKALQCLNELV 229 (336)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHhHH-------hCCCCCCCHHH---HHHcCCCHHHhcCccccHHHHHHHHHHH
Confidence 111 11222222333444444443344442 333 223221 2334443 356777788888
Q ss_pred HHHHHHHHH
Q 007135 548 TATWMKMNS 556 (616)
Q Consensus 548 ~~~wK~lN~ 556 (616)
..++.-+..
T Consensus 230 ~~A~~~~~~ 238 (336)
T TIGR01559 230 TNALHHATD 238 (336)
T ss_pred HHHHHHHHH
Confidence 888865443
No 36
>smart00463 SMR Small MutS-related domain.
Probab=21.15 E-value=1.1e+02 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.240 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 007135 532 TGASESDAREHIRDLITATWMKM 554 (616)
Q Consensus 532 ~g~SeEeA~~~i~~mI~~~wK~l 554 (616)
||++.+||...+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999888753
Done!