Query 007135
Match_columns 616
No_of_seqs 239 out of 892
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 3E-165 1E-169 1369.2 49.4 532 59-613 21-554 (554)
2 3n0f_A Isoprene synthase; terp 100.0 2E-165 7E-170 1372.7 45.1 535 59-612 14-551 (555)
3 3m00_A Aristolochene synthase; 100.0 2E-164 6E-169 1362.3 49.7 531 59-613 16-550 (550)
4 2ong_A 4S-limonene synthase; m 100.0 2E-160 6E-165 1339.2 50.9 539 60-612 2-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 4E-159 1E-163 1327.8 44.5 541 59-612 5-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-158 6E-163 1326.7 41.6 531 59-612 34-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 3E-146 1E-150 1257.6 50.6 517 88-613 221-756 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 3E-146 1E-150 1265.2 48.7 520 88-613 273-817 (817)
9 3s9v_A Abietadiene synthase, c 100.0 1E-145 4E-150 1255.7 49.2 518 88-612 245-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 4E-114 1E-118 982.6 35.8 489 62-612 193-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.8E-49 6E-54 418.9 16.8 249 302-558 17-270 (337)
12 1di1_A Aristolochene synthase; 100.0 4.4E-48 1.5E-52 401.3 17.8 241 303-558 14-264 (300)
13 3bny_A Aristolochene synthase; 100.0 3.3E-46 1.1E-50 391.2 17.9 242 302-558 27-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 3.1E-44 1E-48 386.5 16.6 244 309-558 65-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 5.8E-31 2E-35 286.6 15.7 242 309-558 134-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 3.6E-16 1.2E-20 167.1 13.0 228 307-557 32-276 (374)
17 3sdr_A Alpha-bisabolene syntha 97.5 3.1E-05 1.1E-09 90.1 2.2 158 59-229 24-209 (817)
18 3acx_A Dehydrosqualene synthas 86.0 14 0.00046 37.4 14.8 192 331-556 26-231 (293)
19 4hd1_A Squalene synthase HPNC; 83.4 35 0.0012 34.4 16.5 168 331-538 27-199 (294)
20 3lmd_A Geranylgeranyl pyrophos 81.6 12 0.0004 39.3 12.4 86 422-513 160-246 (360)
21 3ipi_A Geranyltranstransferase 79.7 11 0.00038 38.4 11.2 126 422-555 127-261 (295)
22 3oyr_A Trans-isoprenyl diphosp 66.4 64 0.0022 33.4 13.2 87 422-514 151-239 (345)
23 3mzv_A Decaprenyl diphosphate 65.9 94 0.0032 32.1 14.4 87 422-514 139-227 (341)
24 3rmg_A Octaprenyl-diphosphate 63.8 46 0.0016 34.3 11.5 89 421-514 132-221 (334)
25 2ftz_A Geranyltranstransferase 61.6 53 0.0018 33.1 11.2 121 422-556 134-264 (284)
26 3m0g_A Farnesyl diphosphate sy 58.7 33 0.0011 34.9 9.1 111 432-556 147-269 (297)
27 3p8l_A Geranyltranstransferase 56.4 55 0.0019 33.3 10.3 113 432-556 156-279 (302)
28 1rtr_A Geranyltranstransferase 55.1 39 0.0013 34.4 9.0 112 432-556 148-271 (301)
29 3ts7_A Geranyltranstransferase 54.3 58 0.002 33.5 10.1 112 432-555 158-281 (324)
30 2h8o_A Geranyltranstransferase 48.7 64 0.0022 33.3 9.5 112 432-556 192-315 (335)
31 3lsn_A Geranyltranstransferase 47.3 65 0.0022 32.8 9.2 111 434-555 154-275 (304)
32 3pko_A Geranylgeranyl pyrophos 46.9 1.5E+02 0.0052 30.4 12.0 86 422-513 143-230 (334)
33 4f62_A Geranyltranstransferase 46.5 75 0.0026 32.6 9.5 112 433-556 152-275 (317)
34 4dhd_A Polyprenyl synthetase; 45.6 76 0.0026 33.0 9.5 86 423-513 133-231 (358)
35 3lom_A Geranyltranstransferase 45.3 92 0.0032 31.8 9.9 113 432-555 158-282 (313)
36 1wy0_A Geranylgeranyl pyrophos 44.8 71 0.0024 32.9 9.2 85 423-513 138-224 (342)
37 3p8r_A Geranyltranstransferase 44.0 45 0.0015 34.0 7.3 113 432-556 158-282 (302)
38 3npk_A Geranyltranstransferase 39.3 2E+02 0.007 28.8 11.3 112 431-555 144-265 (291)
39 1pd3_A Nonstructural protein N 37.4 29 0.001 26.0 3.3 33 89-125 16-48 (58)
40 3uca_A Geranyltranstransferase 37.2 1.2E+02 0.0042 31.0 9.4 113 432-556 180-304 (324)
41 3pde_A Farnesyl-diphosphate sy 35.8 1.4E+02 0.0046 30.5 9.4 112 433-556 156-278 (309)
42 3apz_A Geranyl diphosphate syn 33.7 1.7E+02 0.0059 30.0 10.0 88 422-514 153-241 (348)
43 1wmw_A Geranylgeranyl diphosph 32.9 1.4E+02 0.0048 30.4 9.1 85 422-513 130-218 (330)
44 1rqj_A Geranyltranstransferase 31.5 1.4E+02 0.0047 30.1 8.6 112 432-556 152-276 (299)
45 3llw_A Geranyltranstransferase 29.0 1.4E+02 0.0049 30.3 8.2 115 431-556 158-281 (311)
46 3s9v_A Abietadiene synthase, c 27.8 21 0.00073 41.3 1.9 90 63-156 4-96 (785)
47 2j1p_A Geranylgeranyl pyrophos 27.3 54 0.0018 33.1 4.6 109 433-556 161-272 (293)
48 3nf2_A Putative polyprenyl syn 26.5 1.7E+02 0.0057 30.4 8.3 85 423-513 144-230 (352)
49 2q80_A Geranylgeranyl pyrophos 25.9 2.8E+02 0.0097 27.8 9.8 85 421-513 110-195 (301)
50 3tc1_A Octaprenyl pyrophosphat 25.5 5.3E+02 0.018 26.0 11.8 84 421-513 121-206 (315)
51 1qjt_A EH1, epidermal growth f 25.2 2.3E+02 0.0078 23.1 7.5 64 111-186 26-89 (99)
52 1c07_A Protein (epidermal grow 24.7 2.7E+02 0.0091 22.2 8.9 60 111-181 25-85 (95)
53 2e8v_A Geranylgeranyl pyrophos 23.2 1.7E+02 0.0059 30.0 7.7 87 423-514 132-221 (340)
54 3kra_B Geranyl diphosphate syn 21.6 1E+02 0.0035 30.8 5.3 93 433-555 150-244 (274)
55 1fi6_A EH domain protein REPS1 21.2 2.2E+02 0.0074 22.6 6.5 60 111-181 24-83 (92)
56 3aqb_B Component B of hexapren 20.4 2.6E+02 0.0089 28.3 8.3 87 422-513 130-217 (325)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.3e-165 Score=1369.24 Aligned_cols=532 Identities=35% Similarity=0.637 Sum_probs=496.5
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (616)
.||++|||||+|||+||++ ++++..+.+.+++++||++||+||.... .|++++|+|||+||||||+|||++||+++
T Consensus 21 ~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~l~lID~lqrLGi~~hF~~EI~~~ 96 (554)
T 3g4d_A 21 MRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM---ANSTQKLAFIDSVQRLGVSYHFTKEIEDE 96 (554)
T ss_dssp ----CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC---SSHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred CCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 6999999999999999999 7677788899999999999999997532 69999999999999999999999999999
Q ss_pred HHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCCc
Q 007135 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVE 218 (616)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~ 218 (616)
|++||+. . . . ...||++|||+|||||||||+||| |||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 97 L~~i~~~-~-~------~-~~~dl~~~al~FRlLR~hGy~VS~-dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~ 166 (554)
T 3g4d_A 97 LENIYHN-N-N------D-AENDLYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVH 166 (554)
T ss_dssp HHHHHHS-C-C------C-TTCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCT
T ss_pred HHHHHhc-c-C------C-CCCCHHHHHHHHHHHHhcCCCCCh-hHHhhhcccCCCcccccccchHHHHHHHHHHhCCCC
Confidence 9999985 1 1 1 137999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhhHH
Q 007135 219 EESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNA 298 (616)
Q Consensus 219 gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~ 298 (616)
|| +|||||+.||++||++.+.. ++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+
T Consensus 167 gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~ 241 (554)
T 3g4d_A 167 GE-DILDEAISFTTHHLSLAVAS----LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNM 241 (554)
T ss_dssp TC-HHHHHHHHHHHHHHHHHSTT----CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHHHHhc----cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHH
Confidence 99 99999999999999998865 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHH
Q 007135 299 VQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELEL 377 (616)
Q Consensus 299 ~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ 377 (616)
||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.
T Consensus 242 ~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ 321 (554)
T 3g4d_A 242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIP 321 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 99999999999999999999977 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHh
Q 007135 378 FTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYM 457 (616)
Q Consensus 378 ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl 457 (616)
||+||+|||++++++||+|||+||.+|+|+++|++.++.+.+|+++++|++++|+++++||++||+|+++||+||+||||
T Consensus 322 ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl 401 (554)
T 3g4d_A 322 YTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFK 401 (554)
T ss_dssp HHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999888788999999999999999999999999999999999999
Q ss_pred hhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHH
Q 007135 458 DNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537 (616)
Q Consensus 458 ~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeE 537 (616)
+||++|+|++++++++++++|+.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|
T Consensus 402 ~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeE 481 (554)
T 3g4d_A 402 ANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQ 481 (554)
T ss_dssp HHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHH
T ss_pred hccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccccccC
Q 007135 538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSL 613 (616)
Q Consensus 538 eA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~~ 613 (616)
||++++++||+++||+||++++++++ +|++|+++++|+||+++++|++|||||.|+. ||++|++||++|||+
T Consensus 482 eA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 482 EAYDVFNKHVESAWKDLNQEFLKPTE----MPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCS----SCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999877 9999999999999999999999999999965 999999999999986
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2e-165 Score=1372.72 Aligned_cols=535 Identities=48% Similarity=0.852 Sum_probs=505.8
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKR 137 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~ 137 (616)
.|+++|||||+|||+||+++++++..+.+.+++++||++||+||... . +++++|+|||+||||||+|||++||++
T Consensus 14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~----~~~~~~~L~lID~lqRLGi~~hF~~EI~~ 89 (555)
T 3n0f_A 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNE----KAEFLTLLELIDNVQRLGLGYRFESDIRR 89 (555)
T ss_dssp ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHTTCGGGSHHHHHH
T ss_pred cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 69999999999999999998777778889999999999999999765 5 899999999999999999999999999
Q ss_pred HHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCC
Q 007135 138 FLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLV 217 (616)
Q Consensus 138 ~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~ 217 (616)
+|++||+. ..+++|+ ..||++|||+|||||||||+||| |||++|+|++|+|++++.+||+|||||||||||++
T Consensus 90 ~L~~i~~~--~~~~~~~----~~DL~~~Al~FRLLR~hGy~VS~-dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~ 162 (555)
T 3n0f_A 90 ALDRFVSS--GGFDGVT----KTSLHATALSFRLLRQHGFEVSQ-EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLAL 162 (555)
T ss_dssp HHHHHHHT--CHHHHHT----TTCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhh--ccccccc----cCCHHHHHHHHHHHHhcCCCcCh-HHHhcccccCccchhhhhhhhHHHHHHHHHHhccc
Confidence 99999984 2234443 37999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhhH
Q 007135 218 EEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFN 297 (616)
Q Consensus 218 ~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn 297 (616)
||| +|||||+.||++||++.+..+ ++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||
T Consensus 163 ~gE-~iLdeA~~Fs~~~L~~~~~~~---~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN 238 (555)
T 3n0f_A 163 EGE-NILDEARVFAISHLKELSEEK---IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYN 238 (555)
T ss_dssp TTC-HHHHHHHHHHHHHHHTCCHHH---HCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHH
Confidence 999 999999999999999876531 5778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHH
Q 007135 298 AVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELE 376 (616)
Q Consensus 298 ~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~ 376 (616)
+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+
T Consensus 239 ~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~ 318 (555)
T 3n0f_A 239 MIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELE 318 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 999999999999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhH
Q 007135 377 LFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEY 456 (616)
Q Consensus 377 ~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEY 456 (616)
.||+||+|||++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+++||+||+|||
T Consensus 319 ~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEY 398 (555)
T 3n0f_A 319 LFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDY 398 (555)
T ss_dssp HHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCH
Q 007135 457 MDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASE 536 (616)
Q Consensus 457 l~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~Se 536 (616)
|+||++|+|++++++++|++||+.+|+|+++|+.++|+|++++++|+||+|||+|+++|+++|+++|+|+|||+|+|+|+
T Consensus 399 l~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSe 478 (555)
T 3n0f_A 399 FGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISE 478 (555)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCH
T ss_pred HHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccccc
Q 007135 537 SDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVS 612 (616)
Q Consensus 537 EeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~ 612 (616)
|||++++++||+++||+||++++++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|||
T Consensus 479 EeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 479 ELATESVMNLIDETWKKMNKEKLGGSL----FAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCS----SCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999877 9999999999999999999999999999965 99999999999997
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.8e-164 Score=1362.29 Aligned_cols=531 Identities=35% Similarity=0.654 Sum_probs=508.8
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (616)
.||++|||||+|||+||+++++++..+.+.+++++||++||+||.... .+++++|+|||+||||||+|||++||+++
T Consensus 16 ~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~L~lID~lqrLGi~~hF~~EI~~~ 92 (550)
T 3m00_A 16 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATG---MKLADTLNLIDTIERLGISYHFEKEIDDI 92 (550)
T ss_dssp CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSS---CCHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred CCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 699999999999999999988778788899999999999999997532 68999999999999999999999999999
Q ss_pred HHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCCc
Q 007135 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVE 218 (616)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~ 218 (616)
|++||+.|.. ..||++|||+|||||||||+||| |||++|||++|+|++++.+||+|||||||||||++|
T Consensus 93 L~~i~~~~~~----------~~dl~~~al~FRLLR~hGy~VS~-dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~ 161 (550)
T 3m00_A 93 LDQIYNQNSN----------CNDLCTSALQFRLLRQHGFNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161 (550)
T ss_dssp HHHHHHHCCC----------CSSHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhccc----------CCCHHHHHHHHHHHHhcCCCCCh-HHhhhccccCCCccccchhchHHHHHHHHHHhcCCC
Confidence 9999998743 37999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHH-hhcCCCCCcHHHHHHHhhhhH
Q 007135 219 EESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELAKLDFN 297 (616)
Q Consensus 219 gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~-~Y~~~~~~n~~lLelAKlDFn 297 (616)
|| +|||||+.||++||++.+.+ .+++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||
T Consensus 162 gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn 236 (550)
T 3m00_A 162 AD-DILEDALAFSTIHLESAAPH----LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFN 236 (550)
T ss_dssp TC-GGGTTHHHHHHHHHHHHGGG----CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHHHHhc----cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 99 99999999999999999866 6788999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHH
Q 007135 298 AVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELE 376 (616)
Q Consensus 298 ~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~ 376 (616)
+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+
T Consensus 237 ~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 316 (550)
T 3m00_A 237 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE 316 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHH
Confidence 999999999999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhH
Q 007135 377 LFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEY 456 (616)
Q Consensus 377 ~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEY 456 (616)
.||+||+|||++++++||+|||+||.+|+|+++|++.++.+.+|+++++|++++|+++++||++||+|+++||+||+|||
T Consensus 317 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 396 (550)
T 3m00_A 317 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396 (550)
T ss_dssp HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred hhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCH
Q 007135 457 MDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASE 536 (616)
Q Consensus 457 l~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~Se 536 (616)
|+||++|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+|+++|++||+++|+|+|||+|+|+|+
T Consensus 397 l~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSe 475 (550)
T 3m00_A 397 LSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 475 (550)
T ss_dssp HHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCH
T ss_pred HHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCH
Confidence 999999999999988888766 6699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccC-CCCCCchh-HHHHhhhhccccccC
Q 007135 537 SDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNG-DGHTIQHK-SKNRVLPLLVHPVSL 613 (616)
Q Consensus 537 EeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~-Dg~t~~~~-~k~~I~~ll~~pi~~ 613 (616)
|||++++++||+++||+||++++++++ +|++|+++++|+||+++++|++| ||||.|+. ||++|++||++|||+
T Consensus 476 EeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 476 KEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCS----SCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999877 99999999999999999999998 99999975 999999999999986
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.8e-160 Score=1339.20 Aligned_cols=539 Identities=45% Similarity=0.843 Sum_probs=522.3
Q ss_pred CCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHHH
Q 007135 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFL 139 (616)
Q Consensus 60 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 139 (616)
||++|||||+|||+||+|+++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++|
T Consensus 2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~----~d~~~~l~liD~lqrLGi~~hF~~EI~~~L 77 (543)
T 2ong_A 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE----TDQIRQLELIDDLQRMGLSDHFQNEFKEIL 77 (543)
T ss_dssp CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTGGGTTHHHHHHHH
T ss_pred CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 8999999999999999998777777789999999999999999876 589999999999999999999999999999
Q ss_pred HHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCCcc
Q 007135 140 SRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEE 219 (616)
Q Consensus 140 ~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~g 219 (616)
++||+.|. .+++||+++ ..||++|||+|||||||||+||| |||++|||++|+|++++++||+|||||||||||++||
T Consensus 78 ~~i~~~~~-~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~-dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~g 154 (543)
T 2ong_A 78 SSIYLDHH-YYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQ-EVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEG 154 (543)
T ss_dssp HHHHHTTT-CCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHhhc-ccccccccc-cCCHHHHHHHHHHHHHcCCCccH-HHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCC
Confidence 99999884 578888877 67999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhhHHH
Q 007135 220 ESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299 (616)
Q Consensus 220 E~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~ 299 (616)
| +|||||+.||++||++++..+ .++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+|
T Consensus 155 E-~iL~eA~~Ft~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~ 231 (543)
T 2ong_A 155 E-TTLESAREFATKFLEEKVNEG--GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIV 231 (543)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHSS--CSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHH
Confidence 9 999999999999999998762 2378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHH
Q 007135 300 QAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELF 378 (616)
Q Consensus 300 Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~f 378 (616)
|++||+||++++|||+++||.+ +||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.|
T Consensus 232 Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~f 311 (543)
T 2ong_A 232 QAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQF 311 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9999999999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhh
Q 007135 379 TNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMD 458 (616)
Q Consensus 379 t~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~ 458 (616)
|+||+|||+++++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+++||+||+||||+
T Consensus 312 t~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~ 391 (543)
T 2ong_A 312 TDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLE 391 (543)
T ss_dssp HHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHHH
Q 007135 459 NAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538 (616)
Q Consensus 459 ~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeEe 538 (616)
+|.+|+|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+|+++|+++|+++|+|+|||+|+|+|+||
T Consensus 392 ~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee 471 (543)
T 2ong_A 392 NSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471 (543)
T ss_dssp HHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH
T ss_pred cccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccccc
Q 007135 539 AREHIRDLITATWMKMNSKD-GDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVS 612 (616)
Q Consensus 539 A~~~i~~mI~~~wK~lN~e~-l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~ 612 (616)
|+++++++|+++||+||+++ +++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|||
T Consensus 472 A~~~i~~~ie~~wk~ln~e~~l~~~~----vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 472 ARKHVKWLIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCS----SCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999 98877 9999999999999999999999999999965 99999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.3e-159 Score=1327.76 Aligned_cols=541 Identities=45% Similarity=0.812 Sum_probs=494.0
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (616)
.||++|||||+|||+||+|+++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++
T Consensus 5 ~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~----~d~~~~l~lvD~lqrLGi~~hF~~EI~~~ 80 (549)
T 1n1b_A 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK----MEPVQQLELIHDLKYLGLSDFFQDEIKEI 80 (549)
T ss_dssp ----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcc----cCHHHHHHhHHHHHhCCchhhhHHHHHHH
Confidence 69999999999999999887766777889999999999999999876 58999999999999999999999999999
Q ss_pred HHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCccccccccccccc-ccccccccchHHHHHHHHhhccCC
Q 007135 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKG-KLKSCLGDDIKGILALYEAAYLLV 217 (616)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G-~F~~~l~~dv~glL~LYeAS~l~~ 217 (616)
|++||+.|.. +|+++....||++|||+|||||||||+||| |||++|||++| +|++++++||+|||||||||||++
T Consensus 81 L~~i~~~~~~---~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~-dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~ 156 (549)
T 1n1b_A 81 LGVIYNEHKC---FHNNEVEKMDLYFTALGFRLLRQHGFNISQ-DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLR 156 (549)
T ss_dssp HHHHHHHCHH---HHHCCCCSCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhcc---ccccccccCChhhchhhhhHHHhcCCCcCH-HHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCC
Confidence 9999987432 222223357999999999999999999999 99999999999 999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhhH
Q 007135 218 EEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFN 297 (616)
Q Consensus 218 ~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn 297 (616)
||| +|||||++||++||++++.++++.++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||
T Consensus 157 ~gE-~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn 235 (549)
T 1n1b_A 157 KGE-DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFN 235 (549)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHH
Confidence 999 9999999999999999987532233788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHH
Q 007135 298 AVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELE 376 (616)
Q Consensus 298 ~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~ 376 (616)
+||++||+||++++|||+++||.+ |||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++
T Consensus 236 ~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~ 315 (549)
T 1n1b_A 236 IIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELE 315 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhH
Q 007135 377 LFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEY 456 (616)
Q Consensus 377 ~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEY 456 (616)
.||+||+|||+++++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+++||+||+|||
T Consensus 316 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEY 395 (549)
T 1n1b_A 316 LFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEY 395 (549)
T ss_dssp HHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhHHHHHHHHHhCCCCChHH-HHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCC
Q 007135 457 MDNAWISVSGPVILLHAYTLIANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS 535 (616)
Q Consensus 457 l~~~~vS~G~~~ll~~~~~~~G~~l~~e~-~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S 535 (616)
|++|.+|+|+++++++++++||..+|+++ ++|+.++|++++++++|+||+|||+|+++|+++|+++|+|+|||+|+|+|
T Consensus 396 l~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s 475 (549)
T 1n1b_A 396 LNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNAS 475 (549)
T ss_dssp HHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCC
T ss_pred HHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccccc
Q 007135 536 ESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVS 612 (616)
Q Consensus 536 eEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~ 612 (616)
+|||++++++||+++||+||++++++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|||
T Consensus 476 ~eeA~~~i~~~i~~~wk~ln~e~l~~~~----vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 476 EEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCS----SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999877 9999999999999999999999999999975 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.7e-158 Score=1326.66 Aligned_cols=531 Identities=47% Similarity=0.813 Sum_probs=468.3
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (616)
.||++|||||+|||+||+|+++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++
T Consensus 34 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~----~d~~~~l~lID~lqrLGi~~hFe~EI~~~ 109 (569)
T 2j5c_A 34 WIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE----VDSIRRLELIDDLRRLGISCHFEREIVEI 109 (569)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 69999999999999999997777777788999999999999999876 58999999999999999999999999999
Q ss_pred HHHHH-hhccCCccccccccccCChHHHHHHHHHHHhcCCCCCccccccccccccc-ccccccccchHHHHHHHHhhccC
Q 007135 139 LSRIY-NERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKG-KLKSCLGDDIKGILALYEAAYLL 216 (616)
Q Consensus 139 L~~i~-~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G-~F~~~l~~dv~glL~LYeAS~l~ 216 (616)
|++|| +.+.+ ...||++|||+|||||||||+||| |||++|||++| +|++++++||+|||||||||||+
T Consensus 110 L~~i~~~~~~~---------~~~Dl~~~al~FRlLR~hGy~Vs~-dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~ 179 (569)
T 2j5c_A 110 LNSKYYTNNEI---------DERDLYSTALRFRLLRQYDFSVSQ-EVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLS 179 (569)
T ss_dssp HHHHTTSSCCS---------CTTCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCc---------ccCChhhhhHHhHHHHhcCCCcCH-HHHhcccCCCCCccccchhhccHHHHHHHHHHhcC
Confidence 99999 75432 257999999999999999999999 99999999999 99999999999999999999999
Q ss_pred CcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhh
Q 007135 217 VEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDF 296 (616)
Q Consensus 217 ~~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDF 296 (616)
+||| +|||||+.||++||++++.+ .++++|+++|+|||++|||+++||||||+||++|++++++|++|||||||||
T Consensus 180 ~~gE-~iLdeA~~Ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldF 255 (569)
T 2j5c_A 180 AQGE-ETLRLARDFATKFLQKRVLV---DKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDF 255 (569)
T ss_dssp CTTC-HHHHHHHHHHHHTTSSCC-------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhH
Confidence 9999 99999999999999988765 2378899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHH
Q 007135 297 NAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL 375 (616)
Q Consensus 297 n~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl 375 (616)
|+||++||+||++++|||+++||.+ +||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|+
T Consensus 256 n~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl 335 (569)
T 2j5c_A 256 NMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEEL 335 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 9999999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHh
Q 007135 376 ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEE 455 (616)
Q Consensus 376 ~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleE 455 (616)
+.||+||+|||+++++.||+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||
T Consensus 336 ~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 415 (569)
T 2j5c_A 336 QLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEE 415 (569)
T ss_dssp HHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCC
Q 007135 456 YMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS 535 (616)
Q Consensus 456 Yl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S 535 (616)
||++|.+|+|++++++++++++|..+|+++++|+.++|++++++++|+||+|||+|+++|+++|+++|+|+|||+|+|+|
T Consensus 416 Yl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s 495 (569)
T 2j5c_A 416 YMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNAS 495 (569)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------C
T ss_pred HHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccC-CCCCCchh-HHHHhhhhcccccc
Q 007135 536 ESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNG-DGHTIQHK-SKNRVLPLLVHPVS 612 (616)
Q Consensus 536 eEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~-Dg~t~~~~-~k~~I~~ll~~pi~ 612 (616)
+|||+++++++|+++||+||+++++ ++ +|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 496 ~eeA~~~i~~~ie~~wk~ln~e~l~-~~----vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 496 EEEAREHVRSLIDQTWKMMNKEMMT-SS----FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-CC----SCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cC----CCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999999999998 77 99999999999999999999999 99999965 99999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3.2e-146 Score=1257.60 Aligned_cols=517 Identities=31% Similarity=0.516 Sum_probs=490.2
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHH
Q 007135 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (616)
Q Consensus 88 ~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~a 166 (616)
.++.++|...|++.-++.|++|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+||++++...||++||
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 300 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTA 300 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 57889999999998777888897 99999999999999999999999999999999999998899999888889999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccccccccc---cccchHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcCC
Q 007135 167 LEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSC---LGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNN 243 (616)
Q Consensus 167 l~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~---l~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~~ 243 (616)
|+|||||||||+||| |||++|+|++|+|+++ +.+||+|||||||||||+|||| +|||||+.||++||++++.++
T Consensus 301 l~FRlLR~~Gy~VS~-dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~- 377 (764)
T 3p5p_A 301 LGLRTLRMHGYNVSS-DVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDE-RAMDDARKFAEPYLREALATK- 377 (764)
T ss_dssp HHHHHHHHTTCCCCG-GGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCccH-hHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhcc-
Confidence 999999999999999 9999999999999874 6899999999999999999999 999999999999999988642
Q ss_pred CCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCC------------CcHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007135 244 NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAEHQEELKYVS 311 (616)
Q Consensus 244 ~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAKlDFn~~Q~~hq~El~~ls 311 (616)
+.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++++
T Consensus 378 ~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~ 457 (764)
T 3p5p_A 378 ISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT 457 (764)
T ss_dssp SCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhc
Confidence 3467899999999999999999999999999999998765 4999999999999999999999999999
Q ss_pred HHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccccccc
Q 007135 312 RWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMD 391 (616)
Q Consensus 312 rWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~~~~~ 391 (616)
||||++||.+|||||||++|||||++| |||+||.+|++|||+++|++++||+||+|||+||++.||+||+|||+++++
T Consensus 458 rWwk~~~l~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 535 (764)
T 3p5p_A 458 RWWKESGMADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLH 535 (764)
T ss_dssp HHHHHTSTTTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGG
T ss_pred eeHHhcCCCcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhh
Confidence 999999997799999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHH
Q 007135 392 QLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 471 (616)
Q Consensus 392 ~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~ 471 (616)
+||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++
T Consensus 536 ~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~ 615 (764)
T 3p5p_A 536 EIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTL 615 (764)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcC-CCCHHHHHHHHHHHHHHH
Q 007135 472 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAREHIRDLITAT 550 (616)
Q Consensus 472 ~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~SeEeA~~~i~~mI~~~ 550 (616)
.+++++|..+|+|+++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|||+++++++|+++
T Consensus 616 ~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~ 695 (764)
T 3p5p_A 616 QPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRA 695 (764)
T ss_dssp HHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999976669999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHhhcC-CCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccccccC
Q 007135 551 WMKMNSKDGD-ENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSL 613 (616)
Q Consensus 551 wK~lN~e~l~-~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~~ 613 (616)
||+||+++++ +++ +|++|+++++|+||+++|+|+++||||.|+. ||++|++||++||++
T Consensus 696 wKeln~e~l~~~~~----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 696 LKEASFEYFKPSND----IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHHHSCCSS----SCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999997 666 9999999999999999999999999999876 999999999999987
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=3e-146 Score=1265.24 Aligned_cols=520 Identities=33% Similarity=0.565 Sum_probs=489.0
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHH
Q 007135 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (616)
Q Consensus 88 ~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~a 166 (616)
.++.++|...|++.-++.|++|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+||+++....||++||
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 352 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTA 352 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 57889999999998777888897 99999999999999999999999999999999999998899999988889999999
Q ss_pred HHHHHHHhcCCCCCccccccccccccccccccc---ccchHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcCC
Q 007135 167 LEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNN 243 (616)
Q Consensus 167 l~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~~ 243 (616)
|+|||||||||+||| |||++|+|++|+|++++ .+||+|||||||||||+|||| +|||||+.||++||++++.++.
T Consensus 353 l~FRlLR~~Gy~VS~-dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~ 430 (817)
T 3sdr_A 353 LGFRLLRLHRYNVSP-AIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLREALEKSE 430 (817)
T ss_dssp HHHHHHHHTTCCCCG-GGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCCccH-hHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999 99999999999999865 589999999999999999999 9999999999999999876421
Q ss_pred ----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCC------------CcHHHHHHHhhhhHHHHHHHHHHH
Q 007135 244 ----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAEHQEEL 307 (616)
Q Consensus 244 ----~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAKlDFn~~Q~~hq~El 307 (616)
++++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||
T Consensus 431 ~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL 510 (817)
T 3sdr_A 431 TSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEM 510 (817)
T ss_dssp GGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhh
Confidence 1234779999999999999999999999999999998775 499999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccc
Q 007135 308 KYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDV 387 (616)
Q Consensus 308 ~~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~ 387 (616)
++++||||++||.+|||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+||++.||+||+|||+
T Consensus 511 ~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~ 590 (817)
T 3sdr_A 511 KNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDL 590 (817)
T ss_dssp HHHHHHHHHSSGGGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCG
T ss_pred hhhceeHHhcCCCcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCc
Confidence 99999999999977999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhh
Q 007135 388 NAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467 (616)
Q Consensus 388 ~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~ 467 (616)
+++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++
T Consensus 591 ~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~ 670 (817)
T 3sdr_A 591 SFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQR 670 (817)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHH
T ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhCCCCChHHHHhhh--hhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcC-CCCHHHHHHHH
Q 007135 468 V-ILLHAYTLIANPPTKEALQFLE--EYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAREHI 543 (616)
Q Consensus 468 ~-ll~~~~~~~G~~l~~e~~e~~~--~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~SeEeA~~~i 543 (616)
+ +++++++++|..+|+|+++|+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|||++++
T Consensus 671 ~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i 750 (817)
T 3sdr_A 671 ILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHI 750 (817)
T ss_dssp HHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHH
Confidence 8 7788888899999999999975 456999999999999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccccccC
Q 007135 544 RDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSL 613 (616)
Q Consensus 544 ~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~~ 613 (616)
+++|+++||+||++++++++ +|++|+++++|+||+++|||+++||||.|+. ||++|++||++|||+
T Consensus 751 ~~~Ie~~wKeln~e~l~~~~----~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 751 YSILEPAVKELTREFLKPDD----VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHSCCS----SCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999999777 9999999999999999999999999999865 999999999999985
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.2e-145 Score=1255.74 Aligned_cols=518 Identities=31% Similarity=0.544 Sum_probs=493.0
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHH
Q 007135 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (616)
Q Consensus 88 ~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~a 166 (616)
.++.++|...|++.-++.|+.|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+||+++....||++||
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 324 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTA 324 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHH
Confidence 57889999999998777888897 99999999999999999999999999999999999998899999888788999999
Q ss_pred HHHHHHHhcCCCCCccccccccccccccccccc---ccchHHHHHHHHhhccCCcccHHHHHHHHHHhHHHHHHHHhcCC
Q 007135 167 LEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNN 243 (616)
Q Consensus 167 l~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~~iLdeA~~fs~~~L~~~~~~~~ 243 (616)
|+|||||||||+||| |||++|+|++|+|++++ .+||+|||||||||||+|||| +|||||+.||++||++++..+.
T Consensus 325 l~FRlLR~~Gy~VS~-dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~ 402 (785)
T 3s9v_A 325 MGLRILRLHGYNVSS-DVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGE-TIMEEAKLCTERYLRNALENVD 402 (785)
T ss_dssp HHHHHHHHTTCCCCG-GGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCCH-HHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCc-HHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999 99999999999999865 699999999999999999999 9999999999999999886532
Q ss_pred ----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCC------------CcHHHHHHHhhhhHHHHHHHHHHH
Q 007135 244 ----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAEHQEEL 307 (616)
Q Consensus 244 ----~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAKlDFn~~Q~~hq~El 307 (616)
+.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||
T Consensus 403 ~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL 482 (785)
T 3s9v_A 403 AFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTEL 482 (785)
T ss_dssp TTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999998875 499999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhccc
Q 007135 308 KYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDV 387 (616)
Q Consensus 308 ~~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~rWD~ 387 (616)
++++||||++||.+|||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||+
T Consensus 483 ~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~ 562 (785)
T 3s9v_A 483 QDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDL 562 (785)
T ss_dssp HHHHHHHHHTTTTSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSS
T ss_pred HHHhHHHHHcCCCcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCc
Confidence 99999999999977999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhh
Q 007135 388 NAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467 (616)
Q Consensus 388 ~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~ 467 (616)
+++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++
T Consensus 563 ~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~ 642 (785)
T 3s9v_A 563 SLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALG 642 (785)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHH
T ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcC-CCCHHHHHHHHHHH
Q 007135 468 VILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAREHIRDL 546 (616)
Q Consensus 468 ~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~SeEeA~~~i~~m 546 (616)
++++++++++|..+|+|+++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|||+++++++
T Consensus 643 ~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~ 722 (785)
T 3s9v_A 643 TVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSV 722 (785)
T ss_dssp HHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999976669999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh--HHHHhhhhcccccc
Q 007135 547 ITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK--SKNRVLPLLVHPVS 612 (616)
Q Consensus 547 I~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~--~k~~I~~ll~~pi~ 612 (616)
|+++||+||++++++ . +|++|+++++|+||+++|+|+++||||.|+. ||++|++||++||.
T Consensus 723 Ie~~wKeln~e~l~~-~----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 723 MENALEELNREFVNN-K----IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHS-C----CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcC-C----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999973 2 8999999999999999999999999999864 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=3.8e-114 Score=982.57 Aligned_cols=489 Identities=23% Similarity=0.319 Sum_probs=420.0
Q ss_pred CCCCCCCCCCcCccccCCc---hhhhhHHHHHHHHHHHHHHHHhhccccccc-chhhhHHHHHHHHHhCCccccHHHHHH
Q 007135 62 SANYQPSMWGYDYLQSLSN---EYVVESYAQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKR 137 (616)
Q Consensus 62 ~~~~~ps~W~~~fl~~~~~---~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~ 137 (616)
+..+++. +-.|+.|++. -+......++.++|+..|+++.++.|++|+ |++++||+||+||||||+|||++||++
T Consensus 193 ~~~~q~~--~GS~~~SPsaTAa~l~~~~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~ 270 (727)
T 3pya_A 193 LLKLQSQ--DGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKE 270 (727)
T ss_dssp HGGGCCT--TSSBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred HhcccCC--CCCcccCHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 4455553 4455555332 112223368899999999999888998998 999999999999999999999999999
Q ss_pred HHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccc---cccchHHHHHHHHhhc
Q 007135 138 FLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSC---LGDDIKGILALYEAAY 214 (616)
Q Consensus 138 ~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~---l~~dv~glL~LYeAS~ 214 (616)
+|+++|+.|.++|+||+++....||++|||+|||||||||+||| |||++|+ ++|+|++. +.+||+|||+||||||
T Consensus 271 ~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~-DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~ 348 (727)
T 3pya_A 271 CLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSA-DVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQ 348 (727)
T ss_dssp HHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCG-GGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCH-HHHHhcc-CCCcccccccccccccHHHHHHHHHHH
Confidence 99999999988899999887788999999999999999999999 9999999 78999843 4689999999999999
Q ss_pred cCCcccHHHHHHHHHHhHHHHHHHHhcCC----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCC-------
Q 007135 215 LLVEEESNIFNEAINFTTTHLKEYVKHNN----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------- 283 (616)
Q Consensus 215 l~~~gE~~iLdeA~~fs~~~L~~~~~~~~----~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------- 283 (616)
|++||| +|||||+.||++||++.+.++. |+++++|+++|+|||++|||+++||||||+||++|+++++
T Consensus 349 l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~ 427 (727)
T 3pya_A 349 LAFPRE-EILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTL 427 (727)
T ss_dssp TCCTTC-HHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSE
T ss_pred cCCCch-HHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhh
Confidence 999999 9999999999999999886431 2346789999999999999999999999999999997654
Q ss_pred ------CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhhhhhhchh
Q 007135 284 ------VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357 (616)
Q Consensus 284 ------~n~~lLelAKlDFn~~Q~~hq~El~~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~ 357 (616)
+|++||||||||||+||++||+||++++||||++||.+|||||||++|||||++|++|||+||.+|++|||+++
T Consensus 428 yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~ 507 (727)
T 3pya_A 428 YRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSV 507 (727)
T ss_dssp ECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999977999999999999999999999999999999999999
Q ss_pred hhhhhhcccccCCCHHHHHHHHHHHhhcccc---------cccc---CCch--hHHHHHHHhhhHHHHHHHHHHhcCccc
Q 007135 358 LITTIDDVYDVYGTLDELELFTNAVERWDVN---------AMDQ---LPYY--MKLCFLVLHNSTNEMAFDVLKKQGVHI 423 (616)
Q Consensus 358 li~viDD~fD~yGt~eEl~~ft~ai~rWD~~---------~~~~---lPey--mk~~f~aL~~~~~ei~~~~~k~~g~~~ 423 (616)
+++++||+||+|| |||+.||+||+|||.+ +++. +|+| ||+||.+|+|++||++.++.++||+++
T Consensus 508 l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v 585 (727)
T 3pya_A 508 LVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDV 585 (727)
T ss_dssp HHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999 9999999999999974 3333 3887 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHh-CCCCChHHHHhhhhhhhHHHHHHhH
Q 007135 424 IPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI-ANPPTKEALQFLEEYPNIIRWPSMI 502 (616)
Q Consensus 424 ~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~-G~~l~~e~~e~~~~~p~l~~~~~~I 502 (616)
++|++++|.++++++++||+ + +| |. +++..+.++ |..+++ ++.. +.+..|.++++.|
T Consensus 586 ~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae--llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~i 643 (727)
T 3pya_A 586 NNLLYLSWGDWMEKWKLYGD-E--------GE---------GE--LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRI 643 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-C--------CH---------HH--HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-c--------cc---------ee--eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHH
Confidence 99999999999999999997 2 33 22 333333334 666777 6554 6677799999999
Q ss_pred HHHhcCccCchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhh
Q 007135 503 FRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARM 582 (616)
Q Consensus 503 ~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~ 582 (616)
+||+||+.++++|+ .+++.+.|+..|++|++.++++++ +++|++| |+.++
T Consensus 644 crllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~--~~ip~~~-----tf~~V 693 (727)
T 3pya_A 644 CLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESD--TFRDVSI-----TFLDV 693 (727)
T ss_dssp SCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCT--TTHHHHH-----HHHHH
T ss_pred hHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCC--CCCCCcc-----cHHHH
Confidence 99999999999977 557899999999999999997653 2499999 56666
Q ss_pred hccccccCCCCCCchhHHHHhhhhcccccc
Q 007135 583 AQCTYQNGDGHTIQHKSKNRVLPLLVHPVS 612 (616)
Q Consensus 583 ~~~~Y~~~Dg~t~~~~~k~~I~~ll~~pi~ 612 (616)
++.||.. ||++|+ |+.||.+||++||-
T Consensus 694 ~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 694 AKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 6666764 999998 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.8e-49 Score=418.88 Aligned_cols=249 Identities=13% Similarity=0.078 Sum_probs=226.5
Q ss_pred HHHHHHHHH-HHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhcccccC--CCHHHHHH
Q 007135 302 EHQEELKYV-SRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVY--GTLDELEL 377 (616)
Q Consensus 302 ~hq~El~~l-srWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~y--Gt~eEl~~ 377 (616)
.|.+|++.. ++||+++|+.+.+|+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|++.
T Consensus 17 p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~ 96 (337)
T 1ps1_A 17 PDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQ 96 (337)
T ss_dssp TTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHH
Confidence 455666555 6899999998889999999999999999999999999999 9999999999999999998 69999999
Q ss_pred HHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHhH
Q 007135 378 FTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIP-TLEEY 456 (616)
Q Consensus 378 ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iP-tleEY 456 (616)
|++++.+|+.+ .+|+|+++++.++.+++++++.. .++....+++++|++|++++++||+|+.+|++| |++||
T Consensus 97 ~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEY 169 (337)
T 1ps1_A 97 LTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQY 169 (337)
T ss_dssp HHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHH
T ss_pred HHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 99999999864 48999999999999999998754 355667899999999999999999999999999 99999
Q ss_pred hhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCH
Q 007135 457 MDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASE 536 (616)
Q Consensus 457 l~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~Se 536 (616)
|++|++|+|++++++++++++|..+|+++++. +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++|+|+
T Consensus 170 l~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~ 248 (337)
T 1ps1_A 170 LAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSK 248 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCH
T ss_pred HHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCH
Confidence 99999999999999999999999999998776 56678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007135 537 SDAREHIRDLITATWMKMNSKD 558 (616)
Q Consensus 537 EeA~~~i~~mI~~~wK~lN~e~ 558 (616)
|||++++.++|+++||+||++.
T Consensus 249 eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 249 SRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=4.4e-48 Score=401.30 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=221.9
Q ss_pred HHHHHHHH-HHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhcccccCCCHHHHHHHHH
Q 007135 303 HQEELKYV-SRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLDELELFTN 380 (616)
Q Consensus 303 hq~El~~l-srWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~yGt~eEl~~ft~ 380 (616)
|.+|++.. .+||+++|+.++||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|++
T Consensus 14 ~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~ 92 (300)
T 1di1_A 14 RVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNN 92 (300)
T ss_dssp THHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHH
Confidence 55677665 6777999998889999999999999999888999999999 999999999999999999 78999999999
Q ss_pred HHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhc
Q 007135 381 AVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNA 460 (616)
Q Consensus 381 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~ 460 (616)
++.+|+.+ +.+|+||++++.++++++++++.... .+.++.|+.++++|+ ||+|+..|++||++|||++|
T Consensus 93 ~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r 161 (300)
T 1di1_A 93 RLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYR 161 (300)
T ss_dssp HHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHH
T ss_pred HHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHH
Confidence 99999875 46899999999999999999987652 356777999999997 89999999999999999999
Q ss_pred cccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--------CccchhhhhhcC
Q 007135 461 WISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--------VPKAIQCYMHET 532 (616)
Q Consensus 461 ~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--------~~n~V~cyMkE~ 532 (616)
++|+|++++++++++++|..+|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++
T Consensus 162 ~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~ 238 (300)
T 1di1_A 162 EKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEES 238 (300)
T ss_dssp HTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHc
Confidence 999999999999999999999999988 369999999999999999999999999998 779999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 007135 533 GASESDAREHIRDLITATWMKMNSKD 558 (616)
Q Consensus 533 g~SeEeA~~~i~~mI~~~wK~lN~e~ 558 (616)
|+|+|||++++.++|++.|+++|+..
T Consensus 239 g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 239 KLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=3.3e-46 Score=391.19 Aligned_cols=242 Identities=12% Similarity=0.046 Sum_probs=218.2
Q ss_pred HHHHHHHHH-HHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhcccccCCCHHHHHHHH
Q 007135 302 EHQEELKYV-SRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLDELELFT 379 (616)
Q Consensus 302 ~hq~El~~l-srWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~yGt~eEl~~ft 379 (616)
.|.+|++.. .+||+++|+...||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|+
T Consensus 27 p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~ 105 (320)
T 3bny_A 27 PLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYN 105 (320)
T ss_dssp TTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHH
Confidence 355677665 6777999998779999999999999999888999999999 999999999999999999 8899999999
Q ss_pred HHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhh
Q 007135 380 NAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDN 459 (616)
Q Consensus 380 ~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~ 459 (616)
+++.+|+.+ +.+|+||++++.++++++++++... + .+.++.|+.++ ++++|++|+..|++||++|||++
T Consensus 106 ~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~ 174 (320)
T 3bny_A 106 EKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEY 174 (320)
T ss_dssp HHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHH
T ss_pred HHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHH
Confidence 999999865 4689999999999999999998664 2 24556676777 59999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--------Cccchhhhhhc
Q 007135 460 AWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--------VPKAIQCYMHE 531 (616)
Q Consensus 460 ~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--------~~n~V~cyMkE 531 (616)
|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|||++
T Consensus 175 r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~ 251 (320)
T 3bny_A 175 RERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQE 251 (320)
T ss_dssp HHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHH
Confidence 9999999999999999999999999988 379999999999999999999999999998 78999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 007135 532 TGASESDAREHIRDLITATWMKMNSKD 558 (616)
Q Consensus 532 ~g~SeEeA~~~i~~mI~~~wK~lN~e~ 558 (616)
+|+|+|+|++++.++|++.|+++|+..
T Consensus 252 ~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 252 ADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=3.1e-44 Score=386.48 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=223.8
Q ss_pred HHHHHHHhhCCCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhccccc--CC-CHHHHHHHHHHHhh
Q 007135 309 YVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDV--YG-TLDELELFTNAVER 384 (616)
Q Consensus 309 ~lsrWwk~~~l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~--yG-t~eEl~~ft~ai~r 384 (616)
++.+||+++|+..-+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 65 ~~~~W~~~~gl~~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 65 TTRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 368899999998778899999999999999999999999999 999999999999999996 56 99999999999998
Q ss_pred ccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccc
Q 007135 385 WDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISV 464 (616)
Q Consensus 385 WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~ 464 (616)
+-.. ...+|+++++++.++.+++++++..+ ++....+++++|++++++|++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~----~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFL----PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 5211 22358899999999999999987543 233478999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHHHHHHHHH
Q 007135 465 SGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIR 544 (616)
Q Consensus 465 G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~~~i~ 544 (616)
|+.++++++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|||++++.
T Consensus 220 g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~ 298 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVR 298 (382)
T ss_dssp THHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999888 6788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 007135 545 DLITATWMKMNSKD 558 (616)
Q Consensus 545 ~mI~~~wK~lN~e~ 558 (616)
+||+++||+||+..
T Consensus 299 ~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 299 RRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999853
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=5.8e-31 Score=286.64 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=183.3
Q ss_pred HHHHHHHhhCCCCcchhhhhhhHhHH-hHhCCccCCCc-cchhh-hhhhchhhhhhhhcc-cccCC-CHHH-HHHHHH--
Q 007135 309 YVSRWWRKTGLGELHFARDRIMENFF-WALGEVWEPQF-GYCRR-MSTKANALITTIDDV-YDVYG-TLDE-LELFTN-- 380 (616)
Q Consensus 309 ~lsrWwk~~~l~~l~faRdRlve~Yf-wa~a~~feP~~-s~~Rl-~laK~~~li~viDD~-fD~yG-t~eE-l~~ft~-- 380 (616)
++..|.++.++..=+-.|+++..+-| +.+|.+| |.. +.+|+ +.+|++.|+|++||. +|..| +.+. ...+..
T Consensus 134 ~~~~W~~~~~~l~~~~~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~ 212 (433)
T 3v1v_A 134 RIKRWAEDEVQLYPEEWEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAH 212 (433)
T ss_dssp HHHHHHHHTSCCCC----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHH
Confidence 56789999766331224666777777 5555566 999 79998 999999999999999 49754 3332 122222
Q ss_pred -HHhhccccccccCCc-----hhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q 007135 381 -AVERWDVNAMDQLPY-----YMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLE 454 (616)
Q Consensus 381 -ai~rWD~~~~~~lPe-----ymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtle 454 (616)
++..... ..+.-|. .-..+-.+++++++++.....+ ....+++++|++|+++|++||+|+..|++||+|
T Consensus 213 ~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsle 287 (433)
T 3v1v_A 213 TAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVW 287 (433)
T ss_dssp TTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 2221110 0010010 0124568899999998765444 346899999999999999999999999999999
Q ss_pred hHhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcC-CCccchhhhhhcCC
Q 007135 455 EYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRG-DVPKAIQCYMHETG 533 (616)
Q Consensus 455 EYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rG-d~~n~V~cyMkE~g 533 (616)
|||++|++| |+.+++....+++|..+|++++++ +...+|+++++.++||+|||+||+||+++| +++|+|.|||+++|
T Consensus 288 EYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g 365 (433)
T 3v1v_A 288 EYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQ 365 (433)
T ss_dssp HHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHT
T ss_pred HHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcC
Confidence 999999999 554444446666899999999887 667789999999999999999999999995 78899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Q 007135 534 ASESDAREHIRDLITATWMKMNSKD 558 (616)
Q Consensus 534 ~SeEeA~~~i~~mI~~~wK~lN~e~ 558 (616)
+|+|||++++.+||++.++++.+..
T Consensus 366 ~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 366 LCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.66 E-value=3.6e-16 Score=167.10 Aligned_cols=228 Identities=13% Similarity=0.019 Sum_probs=168.3
Q ss_pred HHHHHHHHHhhC------------CCCcchhhhhhhHhHHhHhCCccCCCccchhh-hhhhchhhhhhhhcccccCCCHH
Q 007135 307 LKYVSRWWRKTG------------LGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLD 373 (616)
Q Consensus 307 l~~lsrWwk~~~------------l~~l~faRdRlve~Yfwa~a~~feP~~s~~Rl-~laK~~~li~viDD~fD~yGt~e 373 (616)
-.+..+|..+.| |..=+-..++.+.+=.|.++..| |..+...+ .++++.+|+|++||.+|..+ +
T Consensus 32 r~~~l~w~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 32 RIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHSCCCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHHhccchhcccccccccccCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 334457887777 32212244566666677777777 99988887 89999999999999999654 6
Q ss_pred HHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 007135 374 ELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTL 453 (616)
Q Consensus 374 El~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtl 453 (616)
++..|.+.+-+ .... + .++..++.+.+.+ +.+..++....++.++|.+++.+++.|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~~---~---~Pl~~al~dl~~r----l~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GREQ---A---HPWWALVNEHFPN----VLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCCC---S---SHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCCC---C---ChHHHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 67777776654 2111 1 1344555555554 445557777889999999999999999863 6778999
Q ss_pred HhHhhhccccchhhHHHHHHHHHhCCCCChHHHH---hhhhhhhHHHHHHhHHHHhcCccCchhhhhc-CCCccchhhhh
Q 007135 454 EEYMDNAWISVSGPVILLHAYTLIANPPTKEALQ---FLEEYPNIIRWPSMIFRLANDLATSSDEVKR-GDVPKAIQCYM 529 (616)
Q Consensus 454 eEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e---~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~r-Gd~~n~V~cyM 529 (616)
++|...++.++|...... |..+|...+. ..+.+..++.....++.|+|||.||.||... |+.+|.|..++
T Consensus 175 ~~Y~~~rR~~sG~~E~~~------~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~ 248 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVG------ASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYV 248 (374)
T ss_dssp TTHHHHHHHHHHCHHHHH------HTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHH------HhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhheh
Confidence 999999888888753322 1223443331 1133445677777799999999999999984 99999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 007135 530 HETGASESDAREHIRDLITATWMKMNSK 557 (616)
Q Consensus 530 kE~g~SeEeA~~~i~~mI~~~wK~lN~e 557 (616)
.++|+|.++|++++..++.....++-+.
T Consensus 249 ~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 249 VSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888653
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.47 E-value=3.1e-05 Score=90.13 Aligned_cols=158 Identities=19% Similarity=0.269 Sum_probs=84.3
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhh-ccccc-----ccchhhhHHHHHHHHHhCCccccH
Q 007135 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE-NKEVD-----YVDALHQLEIVDNLQRLGVSYHFE 132 (616)
Q Consensus 59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~-~~~~~-----~~~~~~~L~lID~lqRLGi~~hF~ 132 (616)
.||+|||+||+|+++|++|+++++..+.+.+++++|+++||+|+. +.+.+ -...++.=| |-.+..++ .+=.
T Consensus 24 ~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~~~~~~g~~g~~S~S~YDTAW-VAmvp~~~--~~~~ 100 (817)
T 3sdr_A 24 IRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGESMITPSAYDTAW-VARVPAID--GSAR 100 (817)
T ss_dssp -----------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCHHHHHH-HHTCBCTT--SCSS
T ss_pred cCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhccccCCCCCcccccCHHHhhH-HheeecCC--CCCC
Confidence 699999999999999999998888889999999999999999997 32100 135566666 55555542 2212
Q ss_pred HHHHHHHHHHHhhccCCccccccccc---cCC-hHHHHHHHHHHHhcCCCCCccccccccccccc-cccc----ccc---
Q 007135 133 DEIKRFLSRIYNERNSRSSYHAKEKQ---ESS-LYAVALEFRLLRQHGFDMHAQGTLSLFMDEKG-KLKS----CLG--- 200 (616)
Q Consensus 133 ~EI~~~L~~i~~~~~~~~~~~~r~~~---~~d-l~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G-~F~~----~l~--- 200 (616)
----++++.|-++-..+| +||.... .+- +.|.|=.-=|.| .++.+ +--+ .| .|-. .+.
T Consensus 101 p~Fp~~~~wil~nQ~~DG-sWg~~~~~~~~d~ll~TlAcvlAL~~---w~~~~-~~i~-----~Gl~fl~~nl~~~~~~~ 170 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDG-SWGIQSHFLLSDRLLATLSCVLVLLK---WNVGD-LQVE-----QGIEFIKSNLELVKDET 170 (817)
T ss_dssp BSSHHHHHHHHHCCCTTS-CCSCTTCCCHHHHHHHHHHHHHHHHH---TTCCH-HHHH-----HHHHHHHHHHTTCCSGG
T ss_pred CCchHHHHHHHHccCCCC-CCCCCCCcchHHHHHHHHHHHHHHHH---ccCCH-HHHH-----HHHHHHHHHHHHhhccc
Confidence 222456777776645555 6775432 112 333333333333 34555 4211 23 2210 011
Q ss_pred ---cc-------hHHHHHHHHhhccCCcccHHHHHHHHH
Q 007135 201 ---DD-------IKGILALYEAAYLLVEEESNIFNEAIN 229 (616)
Q Consensus 201 ---~d-------v~glL~LYeAS~l~~~gE~~iLdeA~~ 229 (616)
.+ +.+||++=++-.|.+|-+...++....
T Consensus 171 ~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~ 209 (817)
T 3sdr_A 171 DQDSLVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQT 209 (817)
T ss_dssp GSCSCCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHH
T ss_pred ccCCCCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHH
Confidence 11 268999988877887633156665443
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=85.98 E-value=14 Score=37.41 Aligned_cols=192 Identities=10% Similarity=0.090 Sum_probs=100.2
Q ss_pred HhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhh-cccccc--ccCCchhHHHHHHHhhh
Q 007135 331 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVER-WDVNAM--DQLPYYMKLCFLVLHNS 407 (616)
Q Consensus 331 e~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~ft~ai~r-WD~~~~--~~lPeymk~~f~aL~~~ 407 (616)
.+|++++-..+ . ..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .+.... ...|+ .++..+|.++
T Consensus 26 ~sF~~a~~~Lp--~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~ 99 (293)
T 3acx_A 26 KSFSYAFDLLP--E--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHV 99 (293)
T ss_dssp HHHHHHHTTSC--H--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHH
T ss_pred CcHHHHHHhCC--H--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHH
Confidence 35555554333 2 45666566778888899999976544446666666654 122110 00022 3566777666
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHH
Q 007135 408 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQ 487 (616)
Q Consensus 408 ~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e 487 (616)
+.+. +. -++.+.+++.++-. +......+|++|+......+.|.--.++...+ |..-.++..+
T Consensus 100 ~~~~--------~l-----~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~ 161 (293)
T 3acx_A 100 AQHK--------NI-----AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYD 161 (293)
T ss_dssp HHHS--------CC-----CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHH
T ss_pred HHHh--------CC-----CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHH
Confidence 5542 21 12445666667643 33345678999988888877776444444444 4321133322
Q ss_pred hhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--CccchhhhhhcCCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 007135 488 FLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--VPKAIQCYMHETGASESD---------AREHIRDLITATWMKMNS 556 (616)
Q Consensus 488 ~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--~~n~V~cyMkE~g~SeEe---------A~~~i~~mI~~~wK~lN~ 556 (616)
.. ..+-.+..++. ++.|+. ....+|- .+.- -|.++|++.|+ ..+.+..++..+..-+.+
T Consensus 162 ~A---~~lG~AlQltN-ilRDv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 162 VA---RRLGESLQLIN-ILRDVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HH---HHHHHHHHHHH-HHHCHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHH-HHHHHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 12222222222 333432 3344553 3332 35678998776 334566666666655554
No 19
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=83.37 E-value=35 Score=34.40 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=85.2
Q ss_pred HhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccC-CC-HHHHHHHHHHHhh-ccccccccCCchhHHHHHHHhhh
Q 007135 331 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY-GT-LDELELFTNAVER-WDVNAMDQLPYYMKLCFLVLHNS 407 (616)
Q Consensus 331 e~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~y-Gt-~eEl~~ft~ai~r-WD~~~~~~lPeymk~~f~aL~~~ 407 (616)
++|+++.-.. |. ..|-.+.-+-.|.=.+||+=|.. +. ...|+.+-+.+.+ ... -|. -+++.+|.++
T Consensus 27 ~sF~~a~~~l--p~--~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g-----~~~--~pv~~al~~~ 95 (294)
T 4hd1_A 27 ENFSVVSLFV--PR--HLRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAG-----EAT--TPAFRALQFT 95 (294)
T ss_dssp TTHHHHTTTC--CT--TTHHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHT-----CCC--SHHHHHHHHH
T ss_pred CcHHHHHHHC--CH--HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC-----CCC--CHHHHHHHHH
Confidence 3555554333 32 24554445667778899999964 32 3345555555544 111 122 2567777766
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCChHHHH
Q 007135 408 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQ 487 (616)
Q Consensus 408 ~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e 487 (616)
+.+.. .. ++.+.+++.++..... ....+|++|+......+.|.--.++...+ |.. +++...
T Consensus 96 ~~~~~--------l~-----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~ 156 (294)
T 4hd1_A 96 IATCN--------LP-----MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERAR 156 (294)
T ss_dssp HHHHT--------CC-----SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHH
T ss_pred HHHcC--------CC-----HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHH
Confidence 65432 11 2335566777654432 34568988888777777665333333333 432 333322
Q ss_pred hhhhhhhHHHHHHhHHHHhcCccCchhhhhcCC--CccchhhhhhcCCCCHHH
Q 007135 488 FLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--VPKAIQCYMHETGASESD 538 (616)
Q Consensus 488 ~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd--~~n~V~cyMkE~g~SeEe 538 (616)
. ....+.-.-|.|=+........+|- .+. -.|.++|+|.++
T Consensus 157 ~-------A~~lG~AlQltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 157 L-------SDATCTALQVANHMQDIDRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp H-------HHHHHHHHHHHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred H-------HHHHHHHHHHHHHHHhchhhhccCceeCCH---HHHHHcCCCHHH
Confidence 2 1112222223332222233345553 333 346778998875
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=81.57 E-value=12 Score=39.34 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.++..+.+++..++.+-+.+..|.... ||.++|+++-..-+|..+..+... ..++. .+++..+. .-.+-+..+
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag-a~~~~~~~---l~~~g~~lG 233 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG-AAPEHIDA---LKNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 466788889999999999999987554 999999988776666544322111 11222 45555443 356778888
Q ss_pred hHHHHhcCccCch
Q 007135 501 MIFRLANDLATSS 513 (616)
Q Consensus 501 ~I~RL~NDI~S~k 513 (616)
+..-+.||+..+.
T Consensus 234 ~aFQI~DDilD~~ 246 (360)
T 3lmd_A 234 MIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 8888999987664
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=79.68 E-value=11 Score=38.35 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.++...++.|-..+..|... .||.++|++.-..-+|.-+..+ +..| ++. .+++..+. .-.+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag-~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG-AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 45566777778888898888888643 4899999987766666543222 1211 222 35554443 35677888
Q ss_pred HhHHHHhcCccCchhhh-----hcCCCccchhhhhhcCCC--CHHHHHHHHHHHHHHHHHHHH
Q 007135 500 SMIFRLANDLATSSDEV-----KRGDVPKAIQCYMHETGA--SESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 500 ~~I~RL~NDI~S~kkE~-----~rGd~~n~V~cyMkE~g~--SeEeA~~~i~~mI~~~wK~lN 555 (616)
++..-+.||+..+.... ..| ..+...+|..+.+- ..|.|++.+.+.++++.+.+.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~g-k~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~ 261 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFT-SETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE 261 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCccCCCcccC-cccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999987775432 223 23666677655431 146666666676776665554
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=66.35 E-value=64 Score=33.44 Aligned_cols=87 Identities=10% Similarity=-0.010 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.++...++.|-+.+..|.. +..||.++|+.+-..-+|..+..+ +..| ++. .+++..+. .-.+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAG-VDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 4567788888899999999888853 445899999988777666543222 2221 222 45555443 35678888
Q ss_pred HhHHHHhcCccCchh
Q 007135 500 SMIFRLANDLATSSD 514 (616)
Q Consensus 500 ~~I~RL~NDI~S~kk 514 (616)
++..-+.||+..+..
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999988754
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=65.93 E-value=94 Score=32.07 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.++...++.+-+.+..|.. +..||.++|+.+-..-+|..+..+ +..| ++. .+++..+. .-.+-+..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIGG-APEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 4567778888899999999988863 456899999987766666543222 1111 222 35554433 35677888
Q ss_pred HhHHHHhcCccCchh
Q 007135 500 SMIFRLANDLATSSD 514 (616)
Q Consensus 500 ~~I~RL~NDI~S~kk 514 (616)
++..-+.||+..+..
T Consensus 213 G~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888889999877643
No 24
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=63.82 E-value=46 Score=34.34 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHH
Q 007135 421 VHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 421 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
..++..+.++...++.|-..+..|.. ...||.++|+.+-..-+|..+..+... ..++. .+++..+. .-.+-...
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 34667788889999999999988853 345899999988777666543322111 11222 35554443 45678888
Q ss_pred HhHHHHhcCccCchh
Q 007135 500 SMIFRLANDLATSSD 514 (616)
Q Consensus 500 ~~I~RL~NDI~S~kk 514 (616)
++..-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 899999999988764
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=61.59 E-value=53 Score=33.11 Aligned_cols=121 Identities=10% Similarity=0.049 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.++...++.|-..+..|......||.++|+..-..-+|..+..+ ..-...|. +++ ..-++-...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~------~l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--Chh------HHHHHHHHH
Confidence 35667777778899999999999765447899999998776666543221 11121232 333 135677888
Q ss_pred HhHHHHhcCccCchhhh-hcCC-------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 500 SMIFRLANDLATSSDEV-KRGD-------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 500 ~~I~RL~NDI~S~kkE~-~rGd-------~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
++..-+.||+..+..+. ..|. ..+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999998775432 2232 12333333 2678899999999999887765
No 26
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=58.69 E-value=33 Score=34.89 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.+-..+..|...+..||.++|+..-..-+|..+..+ ..-...| .+++ ..-.+-...++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 5577788888888755778999999987655555433211 1111123 2333 1355778888889999999
Q ss_pred cCchhhhh-cC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEVK-RG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~~-rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+..+.+ -| | ..+.+.+| | .|.|.+.+.+.++++...+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~----~--l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL----G--LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------CCHHHHH----C--SSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH----H--HHHHHHHHHHHHHHHHHHHHh
Confidence 88754321 12 1 12444443 3 466888889999988766653
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=56.38 E-value=55 Score=33.34 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCcc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 510 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~ 510 (616)
..++.|-..+..|. +..||.++|..+-..-+|..+..+... ..++. .+++..+. .-.+-+..++..-+.||+.
T Consensus 156 ~~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 156 QGMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFALIAGGVLAN-QTEEVIGL---LTQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34667777777774 347899999987544444433211111 11222 35555443 3567788888888999987
Q ss_pred Cchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 511 TSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 511 S~kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
.+.-+. .-| | ..+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKSTYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764332 112 1 12444333 4788999999999999877765
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=55.07 E-value=39 Score=34.35 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHH--HHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH--AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.+-..+..|... .+|.++|+..-..-+|..+..+. .-...| .+++..+. .-++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577777778777543 78999999987766665432211 111123 45665444 356778888899999999
Q ss_pred cCchhhhh-cC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEVK-RG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~~-rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+.-+.+ -| | ..+.+.+|- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 87643321 12 1 124444432 577888999999988877654
No 29
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=54.29 E-value=58 Score=33.54 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.|-..+..|.. ..||.++|+..-..-+|..+..+ +..| ++...+++..+. .-.+-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456777777777754 37899999988655555433222 2222 232245555443 356778888888899998
Q ss_pred cCchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 510 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
..+..+. .-| | ..+.+.+| ..|.|++.+.+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKPNYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CCCHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7664321 111 1 22555444 378899999999998876554
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=48.66 E-value=64 Score=33.32 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.+-..+..|... .+|.++|+.+-..-+|..+... ..-...| .+++..+. .-.+-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577788888888654 7899999988777666543221 1111123 45555444 356778888889999998
Q ss_pred cCchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+.-+. .-| | ..+.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764322 112 1 12444443 2678899999999988877654
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=47.30 E-value=65 Score=32.75 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHH-HHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCc
Q 007135 434 MCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL-HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATS 512 (616)
Q Consensus 434 ~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~ 512 (616)
++.+-..+..|.. ..||.++|+..-..-+|..+..+ ..=..++...+++..+. .-.+-...++..-+.||+..+
T Consensus 154 ~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD~ 228 (304)
T 3lsn_A 154 MVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILDV 228 (304)
T ss_dssp HHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 6777777777754 35899999988554445433211 11111233225555443 356778888889999999877
Q ss_pred hhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 513 SDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 513 kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
..+. .-| | ..+.+.+| ..|.|.+.+++.++++.+.++
T Consensus 229 ~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 229 ESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 5432 112 1 12444444 468899999999998876654
No 32
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=46.90 E-value=1.5e+02 Score=30.37 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
.++..+.+....++.+-+.+..|.. ...||.++|++.-..-+|..+..+ +..| ++. .+++..+. .-.+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDR---TRDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 3456777888889999888887753 456899999987655555533221 1211 222 35555443 35677778
Q ss_pred HhHHHHhcCccCch
Q 007135 500 SMIFRLANDLATSS 513 (616)
Q Consensus 500 ~~I~RL~NDI~S~k 513 (616)
++..-+.||+..+.
T Consensus 217 G~aFQi~DD~ld~~ 230 (334)
T 3pko_A 217 GCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888886653
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=46.49 E-value=75 Score=32.58 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCcc
Q 007135 433 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 510 (616)
Q Consensus 433 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~ 510 (616)
.++.|-..+..|. +..||.++|+..-..-+|.-+..+ +..| ++...+++..+. .-.+-+..++..-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777775 445899999988655555433221 1221 233245555443 3567788888889999987
Q ss_pred Cchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 511 TSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 511 S~kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
.+.-+. .-| | ..+.+.+| ..|.|++.+++.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764332 112 1 22555444 3688999999999998877654
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=45.64 E-value=76 Score=33.03 Aligned_cols=86 Identities=9% Similarity=0.037 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhh
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYS----------SGY-IPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFL 489 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~----------~g~-iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~ 489 (616)
++..+.++...++.|-..+..|.. .+. .||.++|+.+-..-+|..+..+ +..| ++ ..+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSV-SDDRGLAEA- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-CCCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHH-
Confidence 456788888899999999998862 223 6799999988776666543222 1111 12 235554433
Q ss_pred hhhhhHHHHHHhHHHHhcCccCch
Q 007135 490 EEYPNIIRWPSMIFRLANDLATSS 513 (616)
Q Consensus 490 ~~~p~l~~~~~~I~RL~NDI~S~k 513 (616)
.-.+-...++..-+.||+..+.
T Consensus 210 --l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 --AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888888899887653
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=45.27 E-value=92 Score=31.79 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhH-HHHHHHHHhCCC-CChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPV-ILLHAYTLIANP-PTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~-ll~~~~~~~G~~-l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.|-..+..|.. ...||.++|+..-..-+|..+ +.+.. ..++.. .+++..+. .-.+-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELA-KSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC-CCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 356777777777753 237899999987655555433 23333 334442 56665444 356778888888899998
Q ss_pred cCchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 510 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
..+..+. .-| | ..+.+.+| ..|.|.+.+.+.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7664322 112 1 12444343 478899999999998876554
No 36
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=44.82 E-value=71 Score=32.86 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHH--HHHhCCCCChHHHHhhhhhhhHHHHHH
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHA--YTLIANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
++..+.++...++.|-..+..|... ...|.++|+++-..-+|..+.++.. -...| .+++..+. .-.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKK-STVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4567778888899999999999653 3459999999877666654332211 11123 35555443 356788888
Q ss_pred hHHHHhcCccCch
Q 007135 501 MIFRLANDLATSS 513 (616)
Q Consensus 501 ~I~RL~NDI~S~k 513 (616)
+..-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8899999987764
No 37
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=44.01 E-value=45 Score=33.95 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.|-..+..|. +..||.++|+..-..-+|..+..+ +..| ++...+++.. ...-++-+..++..-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~---~~l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAML---PHLDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888885 457899999988655555433221 2221 1211122222 22356778888888899998
Q ss_pred cCchhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~-~rGd---------~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+..+. ..|. ..+.+.+| ..|.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764332 1121 12444444 3688899999999988877654
No 38
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=39.34 E-value=2e+02 Score=28.84 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcC
Q 007135 431 WADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLAND 508 (616)
Q Consensus 431 w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~ND 508 (616)
...++.+-..+..|. +..||.++|..+-..-+|..+..+ ...| ++. .+++..+. .-.+-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEICE-LNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455667766677774 356899999988655555433222 1121 222 35554333 35677888888889999
Q ss_pred ccCchhhh-hcCCC-------ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 509 LATSSDEV-KRGDV-------PKAIQCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 509 I~S~kkE~-~rGd~-------~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
+..+..+. ..|.. .+.+.++ ..+.|.+..+++++++.+.++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 87765432 22322 1222222 367788888888888877665
No 39
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=37.36 E-value=29 Score=26.04 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHh
Q 007135 89 QRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRL 125 (616)
Q Consensus 89 ~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRL 125 (616)
+++.-|.++||.-|..+ .+.++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~T----ensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKIT----ENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCC----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHH
Confidence 55666889999999877 7999999999999864
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=37.22 E-value=1.2e+02 Score=31.04 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
..++.|-..+..|.. ...||.++|+..-..-+|..+..+ +..| ++. .+++..+. .-.+-+..++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~lag-a~~~~~~~---l~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIKAS-IMSGAVLAE-ASEGDIKK---LEGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456778887887753 236899999988544444433221 1111 222 35554443 356778888888899998
Q ss_pred cCchhhh-hcC-----CC----ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEV-KRG-----DV----PKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~-~rG-----d~----~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+.-+. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7664321 111 11 2444333 3688999999999999877654
No 41
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=35.83 E-value=1.4e+02 Score=30.51 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccC
Q 007135 433 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT 511 (616)
Q Consensus 433 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S 511 (616)
.++.|-..+..|. +..+|.++|...-..-+|..+..+... ..++. .+++..+. .-.+-...++..-+.||+..
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ-APEAQWPA---YLQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCGGGHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4566766677774 346899999988555555433221111 11222 34443333 35677788888889999876
Q ss_pred chhhh-hcC-----CC----ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 512 SSDEV-KRG-----DV----PKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 512 ~kkE~-~rG-----d~----~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
+.-+. .-| |. .+.+.+| ..+.|.+..+++++++...+..
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 64321 111 21 2444333 3577888899999988877654
No 42
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=33.67 E-value=1.7e+02 Score=29.98 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.++..+.++...++.+-+.+..|.. ...+|.++|+..-..-+|..+..+... ..++. .+++..+. .-.+-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG-QTAEVAVL---AFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHH
Confidence 4566777888888888887776643 235799999987665555433222111 11222 35554433 356777888
Q ss_pred hHHHHhcCccCchh
Q 007135 501 MIFRLANDLATSSD 514 (616)
Q Consensus 501 ~I~RL~NDI~S~kk 514 (616)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88889999877643
No 43
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=32.91 E-value=1.4e+02 Score=30.45 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHhHhhhccccchhh-HHHHH--HHHHhCCCCChHHHHhhhhhhhHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKW-YSSGYIPTLEEYMDNAWISVSGP-VILLH--AYTLIANPPTKEALQFLEEYPNIIR 497 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW-~~~g~iPtleEYl~~~~vS~G~~-~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~ 497 (616)
.++..+.++...++.|-+.+..| ...+..||.++|+++-..-+|.. +..+. .-...|. +++.. .-.+-.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHH
Confidence 35667788889999999999999 64435689999998877666654 32211 1111232 33322 356777
Q ss_pred HHHhHHHHhcCccCch
Q 007135 498 WPSMIFRLANDLATSS 513 (616)
Q Consensus 498 ~~~~I~RL~NDI~S~k 513 (616)
..++..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7888888888887664
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=31.46 E-value=1.4e+02 Score=30.12 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--h-CCCCChHHHHhhhhhhhHHHHHHhHHHHhcC
Q 007135 432 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--I-ANPPTKEALQFLEEYPNIIRWPSMIFRLAND 508 (616)
Q Consensus 432 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~-G~~l~~e~~e~~~~~p~l~~~~~~I~RL~ND 508 (616)
..++.+-..+..|... .+|.++|+.+-..-+|..+..+ ...| + +. .+++..+. .-++-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777778877543 7899999988766555543222 2221 1 11 23343333 45677888888899999
Q ss_pred ccCchhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 509 LATSSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 509 I~S~kkE~-~rGd---------~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
+..+..+. .-|. ..+...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 87764332 1222 224444432 467888899999999887765
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=28.97 E-value=1.4e+02 Score=30.29 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHH-HHhCCCCChHHH-HhhhhhhhHHHHHHhHHHHhcC
Q 007135 431 WADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEAL-QFLEEYPNIIRWPSMIFRLAND 508 (616)
Q Consensus 431 w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~-~~~G~~l~~e~~-e~~~~~p~l~~~~~~I~RL~ND 508 (616)
...++.+-..+..|. +..||.++|+..-..-+|..+..+... ..++. .+++.. +. .-.+-+..++..-+.||
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag-a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345677777777775 567899999988655555433211111 11222 344443 33 35677888888889999
Q ss_pred ccCchhh-hhcCCCccchhhhhhcCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 007135 509 LATSSDE-VKRGDVPKAIQCYMHETGA------SESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 509 I~S~kkE-~~rGd~~n~V~cyMkE~g~------SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
+..+..+ ..-|..... ++... ..|.|.+..+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9776543 223332111 12222 3578888899999988877653
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=27.82 E-value=21 Score=41.29 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=38.6
Q ss_pred CCCCCCCCCcCccccCCchhh-hhHHHHHHHHHHHHHHHHhhccccc--ccchhhhHHHHHHHHHhCCccccHHHHHHHH
Q 007135 63 ANYQPSMWGYDYLQSLSNEYV-VESYAQRIEKLKGEVRLMLENKEVD--YVDALHQLEIVDNLQRLGVSYHFEDEIKRFL 139 (616)
Q Consensus 63 ~~~~ps~W~~~fl~~~~~~~~-~~~~~~~~~~lk~~V~~~l~~~~~~--~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 139 (616)
.+|+|++|+++++.++..++. ...+.++++.|+++||+|+.+.+.. -...++.=| |-.+..++ -+=.----+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAW-Vamvp~~~--~~~~p~Fp~~~ 80 (785)
T 3s9v_A 4 REFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFRCMGYGETNPSAYDTAW-VARIPAVD--GSDNPHFPETV 80 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHCSSCCCCCCHHHHHH-HTTSBCTT--SCSSBSSHHHH
T ss_pred ccCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhhcCCCCcccCcHHHhhH-HhccccCC--CCCCCCchHHH
Confidence 368999999999998766554 3445778889999999999521100 035666666 44444443 11112224567
Q ss_pred HHHHhhccCCccccccc
Q 007135 140 SRIYNERNSRSSYHAKE 156 (616)
Q Consensus 140 ~~i~~~~~~~~~~~~r~ 156 (616)
+.|-++-..+| +||..
T Consensus 81 ~wil~nQ~~DG-sWg~~ 96 (785)
T 3s9v_A 81 EWILQNQLKDG-SWGEG 96 (785)
T ss_dssp HHHHHCCCTTS-CCSCS
T ss_pred HHHHHccCCCC-CCCCC
Confidence 77776545555 67754
No 47
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=27.26 E-value=54 Score=33.14 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHhHhhhccccchhhHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCc
Q 007135 433 DMCKSFLLEAKWYSSG-YIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 509 (616)
Q Consensus 433 ~~~~a~l~EAkW~~~g-~iPtleEYl~~~~vS~G~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI 509 (616)
.++.|-..+..|...+ ..+|.++|+..-..-+|..+..+ ..-. ++. .+++..+. .-.+-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~-lag-~~~~~~~~---l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGI-IGG-GSDEEIER---LRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HTT-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHH-HcC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566666666664321 24688999887544444432211 1111 222 35565444 356778888889999999
Q ss_pred cCchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007135 510 ATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 556 (616)
Q Consensus 510 ~S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~ 556 (616)
..+..+. ..+...+| ..|.|++.+.+.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8765433 33444444 4678888888888888776654
No 48
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=26.50 E-value=1.7e+02 Score=30.36 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHH
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
++..+.++...++.+-+.+..|.. ...||.++|+.+-..-+|..+..+ +..| ++. .+++..+. .-.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEH-RDRVSVEECLEMEGNKTGALLACA-SSIGAVLGG-ADERTADT---LEKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 456778888899999999998864 347899999988776666544322 2221 222 35555444 356788888
Q ss_pred hHHHHhcCccCch
Q 007135 501 MIFRLANDLATSS 513 (616)
Q Consensus 501 ~I~RL~NDI~S~k 513 (616)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8889999987663
No 49
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=25.94 E-value=2.8e+02 Score=27.79 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHH
Q 007135 421 VHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 421 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
+..+..+.+.+..++.+-..+..|......||.++|+.+-..-+|..+.++...-+ ++. .++ ..-.+-...
T Consensus 110 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~l 181 (301)
T 2q80_A 110 PDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTL 181 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHH
Confidence 34566788888999999999999976666899999998877766654332221111 222 221 134567778
Q ss_pred HhHHHHhcCccCch
Q 007135 500 SMIFRLANDLATSS 513 (616)
Q Consensus 500 ~~I~RL~NDI~S~k 513 (616)
++..-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888887653
No 50
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=25.53 E-value=5.3e+02 Score=25.99 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHH--HHHHhCCCCChHHHHhhhhhhhHHHH
Q 007135 421 VHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH--AYTLIANPPTKEALQFLEEYPNIIRW 498 (616)
Q Consensus 421 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~ 498 (616)
..++..+.++...++.|-+.+..|.. ...||.++|+++-..-+|..+..+. .-...|.. .+ ..-.+-+.
T Consensus 121 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~ 191 (315)
T 3tc1_A 121 ELIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHH
Confidence 34556777888899999999998864 4568999999876666665432211 11112332 22 23567788
Q ss_pred HHhHHHHhcCccCch
Q 007135 499 PSMIFRLANDLATSS 513 (616)
Q Consensus 499 ~~~I~RL~NDI~S~k 513 (616)
.++..-+.||+..+.
T Consensus 192 lG~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 192 FGMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccc
Confidence 888888999987764
No 51
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.15 E-value=2.3e+02 Score=23.09 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=41.6
Q ss_pred chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccc
Q 007135 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLS 186 (616)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~ 186 (616)
..+..=++...+.++|++ ++|++++++.+ ..++-| ....+=...+|.-.-+.|+|+.++. +.+.
T Consensus 26 G~Is~~el~~~l~~~~l~---~~~l~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~g~~~~~-~~l~ 89 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLP---DLILGKIWDLA----DTDGKG----VLSKQEFFVALRLVACAQNGLEVSL-SSLS 89 (99)
T ss_dssp SCCCSHHHHHHHHTSSSC---HHHHHHHHHHH----CCSSSS----SCCSHHHHHHHHHHHHHTTTCCSSG-GGCS
T ss_pred CcCCHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----cCCHHHHHHHHHHHHHHHcCCCCCh-hhcc
Confidence 345556677788899986 67776665543 222111 2234455677888889999999998 6654
No 52
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.67 E-value=2.7e+02 Score=22.23 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=34.3
Q ss_pred chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHHHHHHHHH-hcCCCCCc
Q 007135 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLR-QHGFDMHA 181 (616)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR-~hGy~vS~ 181 (616)
..+..=++...+.++|++ ++|+++++..+ ..++-| ....+=...+|.-.-.+ +.|+.++.
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~~g~~lP~ 85 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLC----DTKDCG----KLSKDQFALAFHLISQKLIKGIDPPH 85 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHH----CTTCSS----SEETTTHHHHHHHHHHHHTSCCCCCS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----cCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 445566778888999976 67777666543 222111 12223333444444444 78998876
No 53
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=23.22 E-value=1.7e+02 Score=29.96 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHhHhhhccccchhhHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHH
Q 007135 423 IIPYLKKAWADMCKSFLLEAKWYSSG--YIPTLEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWP 499 (616)
Q Consensus 423 ~~~~lk~~w~~~~~a~l~EAkW~~~g--~iPtleEYl~~~~vS~G~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~ 499 (616)
++..+.+....++.|-..+..|.... ..||.++|+.+-..-+|..+.++...- .++. .+++ . ...-.+-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 45567778888999999999997655 578999999987776665433221111 1222 2222 1 2345678888
Q ss_pred HhHHHHhcCccCchh
Q 007135 500 SMIFRLANDLATSSD 514 (616)
Q Consensus 500 ~~I~RL~NDI~S~kk 514 (616)
++..-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999876643
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=21.58 E-value=1e+02 Score=30.77 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCcc
Q 007135 433 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 510 (616)
Q Consensus 433 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~ 510 (616)
.++.+-..+..|.. ..||+++|+.+-..-+|..+..+ +..| ++. .+++..+. .-++-+..++..-+.||+.
T Consensus 150 ~~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a-~~lGailag-a~~~~~~~---l~~~G~~lG~aFQI~DD~~ 222 (274)
T 3kra_B 150 GMISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACG-AACGAILGG-AAEEEIQK---LRNFGLYQGTLRGMMEMKN 222 (274)
T ss_dssp THHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHhhc
Confidence 35666666666643 37899999986555555433222 1111 232 45555443 4567888888999999961
Q ss_pred CchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007135 511 TSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMN 555 (616)
Q Consensus 511 S~kkE~~rGd~~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN 555 (616)
. ..|++.+.+.++.+.+-+.|.
T Consensus 223 ~-----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 223 S-----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp T-----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred c-----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 0 124456666666666665544
No 55
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.21 E-value=2.2e+02 Score=22.62 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=34.5
Q ss_pred chhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCc
Q 007135 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHA 181 (616)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~ 181 (616)
..+..=++...+.++|++ ++|+++++..+ ..++-| ....+=...+|.-.-.++.|+.++.
T Consensus 24 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~g~~lp~ 83 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLP---ILELSHIWELS----DFDKDG----ALTLDEFCAAFHLVVARKNGYDLPE 83 (92)
T ss_dssp CEEEHHHHHHHHHHHSSC---HHHHHHHHHHH----CTTCSS----EEEHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcCcHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----CCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 445666778888999976 66777665443 222111 1122222344444446688999887
No 56
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=20.40 E-value=2.6e+02 Score=28.34 Aligned_cols=87 Identities=7% Similarity=0.035 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHhhhccccchhhHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHHH
Q 007135 422 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWPS 500 (616)
Q Consensus 422 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~ 500 (616)
.++..+.++...++.|-..+..|.. ...||.++|+++-..-+|..+..+...-+ ++. .+++..+. .-.+-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 3566777888889999999988864 33689999998877766654332211111 222 45555443 356778888
Q ss_pred hHHHHhcCccCch
Q 007135 501 MIFRLANDLATSS 513 (616)
Q Consensus 501 ~I~RL~NDI~S~k 513 (616)
+..-+.||+..+.
T Consensus 205 ~afQi~DD~ld~~ 217 (325)
T 3aqb_B 205 MSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999987764
Done!