Query 007137
Match_columns 616
No_of_seqs 150 out of 240
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 19:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2291 Oligosaccharyltransfer 100.0 4E-159 8E-164 1269.1 44.8 578 21-613 23-602 (602)
2 PF04597 Ribophorin_I: Ribopho 100.0 9E-127 2E-131 1038.1 49.2 425 28-458 1-432 (432)
3 PF14966 DNA_repr_REX1B: DNA r 98.9 2.6E-08 5.6E-13 88.6 11.5 90 479-568 1-90 (97)
4 PF08487 VIT: Vault protein in 92.7 2 4.3E-05 39.3 11.7 101 29-135 3-117 (118)
5 PF09972 DUF2207: Predicted me 92.4 17 0.00036 40.3 20.9 184 227-432 3-190 (511)
6 smart00609 VIT Vault protein I 89.0 8.4 0.00018 36.2 12.3 105 26-135 12-129 (130)
7 KOG0804 Cytoplasmic Zn-finger 88.6 5.3 0.00012 44.6 12.2 97 499-614 355-452 (493)
8 PF12729 4HB_MCP_1: Four helix 88.6 14 0.0003 34.0 13.6 67 497-567 58-124 (181)
9 PRK09039 hypothetical protein; 87.7 8 0.00017 42.1 12.9 125 434-568 21-153 (343)
10 PRK11637 AmiB activator; Provi 86.8 21 0.00045 39.7 15.8 22 434-455 17-38 (428)
11 PF00261 Tropomyosin: Tropomyo 85.9 6.6 0.00014 40.3 10.6 122 493-615 108-236 (237)
12 PF04156 IncA: IncA protein; 84.9 16 0.00035 35.7 12.4 17 522-538 134-150 (191)
13 PF12072 DUF3552: Domain of un 82.3 29 0.00064 34.8 13.2 51 515-567 61-111 (201)
14 PRK12704 phosphodiesterase; Pr 81.0 63 0.0014 37.3 16.8 24 518-541 68-91 (520)
15 COG3883 Uncharacterized protei 79.5 9.4 0.0002 40.2 8.8 71 520-613 33-103 (265)
16 COG1579 Zn-ribbon protein, pos 79.4 20 0.00044 37.2 11.1 83 525-614 89-173 (239)
17 TIGR03319 YmdA_YtgF conserved 78.8 79 0.0017 36.4 16.7 15 520-534 64-78 (514)
18 smart00787 Spc7 Spc7 kinetocho 78.5 60 0.0013 35.1 14.7 26 512-537 166-191 (312)
19 PF04011 LemA: LemA family; I 78.4 71 0.0015 31.4 14.9 32 478-509 31-62 (186)
20 PF05791 Bacillus_HBL: Bacillu 76.0 53 0.0011 32.6 12.6 16 452-467 28-43 (184)
21 PRK10361 DNA recombination pro 74.0 41 0.00088 38.4 12.4 50 522-574 71-120 (475)
22 COG1579 Zn-ribbon protein, pos 73.4 40 0.00087 35.1 11.3 82 513-608 91-174 (239)
23 cd00176 SPEC Spectrin repeats, 72.8 86 0.0019 29.6 14.0 78 479-559 38-117 (213)
24 PHA02562 46 endonuclease subun 72.7 37 0.0008 38.6 12.1 25 588-612 363-387 (562)
25 TIGR03788 marine_srt_targ mari 72.4 28 0.00061 40.4 11.2 93 37-135 6-111 (596)
26 TIGR03185 DNA_S_dndD DNA sulfu 72.0 80 0.0017 37.2 14.8 42 498-539 189-230 (650)
27 PRK00106 hypothetical protein; 70.9 1.1E+02 0.0025 35.5 15.3 11 462-472 23-33 (535)
28 PF08317 Spc7: Spc7 kinetochor 70.1 64 0.0014 34.7 12.5 20 518-537 177-196 (325)
29 PF10498 IFT57: Intra-flagella 69.8 68 0.0015 35.3 12.7 10 259-268 23-32 (359)
30 PRK09793 methyl-accepting prot 68.9 1.1E+02 0.0024 34.9 14.8 22 595-616 346-367 (533)
31 PF03233 Cauli_AT: Aphid trans 68.7 35 0.00075 33.6 9.0 118 480-610 44-162 (163)
32 PF14362 DUF4407: Domain of un 67.4 1.7E+02 0.0037 30.8 16.3 35 511-545 135-169 (301)
33 TIGR03007 pepcterm_ChnLen poly 66.9 1.2E+02 0.0027 34.1 14.5 15 421-435 121-135 (498)
34 PF07889 DUF1664: Protein of u 66.9 62 0.0013 30.6 10.0 22 588-609 101-122 (126)
35 PF03962 Mnd1: Mnd1 family; I 66.7 71 0.0015 31.9 11.1 81 478-567 70-150 (188)
36 COG0711 AtpF F0F1-type ATP syn 66.3 1.1E+02 0.0024 29.7 12.1 86 478-568 41-126 (161)
37 PHA02562 46 endonuclease subun 66.1 1.2E+02 0.0027 34.4 14.5 32 512-543 214-245 (562)
38 TIGR01005 eps_transp_fam exopo 65.8 1.2E+02 0.0025 36.3 14.7 24 421-444 154-177 (754)
39 PRK15048 methyl-accepting chem 65.5 1.3E+02 0.0029 34.2 14.6 20 597-616 350-369 (553)
40 KOG2150 CCR4-NOT transcription 64.9 69 0.0015 37.2 11.8 73 479-559 6-78 (575)
41 COG3883 Uncharacterized protei 64.9 1.7E+02 0.0037 31.0 13.9 59 479-543 47-105 (265)
42 PRK09174 F0F1 ATP synthase sub 64.9 1E+02 0.0022 31.2 12.0 26 562-591 167-192 (204)
43 PF14257 DUF4349: Domain of un 64.7 21 0.00046 36.9 7.4 61 498-565 105-172 (262)
44 TIGR03185 DNA_S_dndD DNA sulfu 64.7 71 0.0015 37.6 12.5 33 511-543 421-453 (650)
45 TIGR01010 BexC_CtrB_KpsE polys 64.6 1.2E+02 0.0027 32.7 13.5 72 494-567 183-261 (362)
46 COG4942 Membrane-bound metallo 64.4 53 0.0012 36.9 10.6 64 478-543 42-105 (420)
47 PF14362 DUF4407: Domain of un 64.0 1.1E+02 0.0025 32.2 12.8 26 589-614 188-213 (301)
48 PF09726 Macoilin: Transmembra 63.2 65 0.0014 38.6 11.7 26 588-613 634-659 (697)
49 KOG0995 Centromere-associated 62.2 1.6E+02 0.0036 34.3 14.1 47 511-566 273-319 (581)
50 KOG3091 Nuclear pore complex, 62.0 20 0.00043 40.7 6.8 49 526-581 356-404 (508)
51 PRK14474 F0F1 ATP synthase sub 62.0 1E+02 0.0022 32.2 11.7 98 479-584 41-138 (250)
52 KOG0933 Structural maintenance 61.4 1E+02 0.0022 38.2 12.7 27 587-613 910-936 (1174)
53 smart00787 Spc7 Spc7 kinetocho 61.4 1.2E+02 0.0027 32.7 12.5 11 479-489 142-152 (312)
54 PF12325 TMF_TATA_bd: TATA ele 60.2 72 0.0016 29.8 9.1 30 481-510 16-45 (120)
55 KOG0250 DNA repair protein RAD 60.0 1.1E+02 0.0024 38.1 12.9 33 297-337 37-71 (1074)
56 PF06008 Laminin_I: Laminin Do 59.9 84 0.0018 32.6 10.7 26 589-614 219-244 (264)
57 cd07623 BAR_SNX1_2 The Bin/Amp 59.9 80 0.0017 32.1 10.3 61 479-539 75-137 (224)
58 PRK04863 mukB cell division pr 59.4 80 0.0017 41.1 12.2 64 478-543 953-1017(1486)
59 KOG4403 Cell surface glycoprot 59.2 1.9E+02 0.0041 32.8 13.4 36 505-540 293-328 (575)
60 PF09972 DUF2207: Predicted me 58.9 2.9E+02 0.0062 30.6 19.8 128 30-179 3-141 (511)
61 PF06785 UPF0242: Uncharacteri 58.9 1.5E+02 0.0032 32.6 12.2 88 521-611 130-222 (401)
62 PF09731 Mitofilin: Mitochondr 58.8 1.7E+02 0.0037 33.8 14.0 34 580-614 362-395 (582)
63 PF04799 Fzo_mitofusin: fzo-li 58.1 40 0.00086 33.5 7.4 85 442-535 48-137 (171)
64 PF00430 ATP-synt_B: ATP synth 57.8 1.3E+02 0.0029 27.1 10.6 73 447-529 12-84 (132)
65 PRK09343 prefoldin subunit bet 57.7 61 0.0013 30.1 8.3 95 499-614 8-109 (121)
66 PF04740 LXG: LXG domain of WX 57.4 2E+02 0.0043 28.3 12.7 51 478-528 7-60 (204)
67 PF02203 TarH: Tar ligand bind 57.3 53 0.0011 30.8 8.1 30 434-463 6-35 (171)
68 COG5185 HEC1 Protein involved 56.9 2.1E+02 0.0046 32.8 13.4 92 438-540 225-317 (622)
69 PF04065 Not3: Not1 N-terminal 56.8 1.1E+02 0.0023 31.9 10.6 77 478-562 5-81 (233)
70 PRK11519 tyrosine kinase; Prov 56.6 2.4E+02 0.0051 33.8 15.0 19 496-514 282-300 (719)
71 cd07627 BAR_Vps5p The Bin/Amph 56.2 90 0.0019 31.5 10.0 12 585-596 193-204 (216)
72 KOG0250 DNA repair protein RAD 56.2 1.4E+02 0.003 37.3 12.8 29 264-292 63-92 (1074)
73 PF10211 Ax_dynein_light: Axon 56.0 1.5E+02 0.0034 29.5 11.4 9 518-526 111-119 (189)
74 PRK15178 Vi polysaccharide exp 56.0 69 0.0015 36.2 9.8 48 520-567 251-298 (434)
75 PF10168 Nup88: Nuclear pore c 55.8 2.1E+02 0.0046 34.5 14.3 25 112-136 106-135 (717)
76 PF14335 DUF4391: Domain of un 55.7 22 0.00047 36.2 5.4 58 495-555 148-209 (221)
77 cd07664 BAR_SNX2 The Bin/Amphi 55.5 89 0.0019 32.4 9.9 21 483-503 118-138 (234)
78 TIGR00606 rad50 rad50. This fa 55.0 1.8E+02 0.0039 37.3 14.4 97 511-612 744-851 (1311)
79 PF03938 OmpH: Outer membrane 54.3 1.7E+02 0.0037 27.5 11.0 49 520-568 45-96 (158)
80 PRK02224 chromosome segregatio 54.2 1.7E+02 0.0037 35.4 13.6 25 588-612 277-301 (880)
81 TIGR02680 conserved hypothetic 53.8 2.3E+02 0.0051 36.6 15.1 55 512-567 291-345 (1353)
82 PRK14475 F0F1 ATP synthase sub 53.7 2.2E+02 0.0047 27.6 13.2 28 556-586 118-145 (167)
83 KOG4603 TBP-1 interacting prot 53.6 1.2E+02 0.0025 30.3 9.7 55 510-568 85-139 (201)
84 PRK11415 hypothetical protein; 53.5 71 0.0015 27.2 7.3 64 534-612 5-68 (74)
85 PRK13454 F0F1 ATP synthase sub 53.5 2.3E+02 0.0051 27.9 14.9 28 479-506 67-94 (181)
86 KOG4438 Centromere-associated 53.2 1.7E+02 0.0037 33.0 12.0 34 581-614 277-313 (446)
87 PRK08471 flgK flagellar hook-a 53.2 1.5E+02 0.0034 34.8 12.5 122 476-611 88-218 (613)
88 cd07630 BAR_SNX_like The Bin/A 52.7 1.3E+02 0.0027 30.4 10.2 28 480-507 99-126 (198)
89 PF02403 Seryl_tRNA_N: Seryl-t 52.6 1.2E+02 0.0026 27.0 9.1 43 500-542 55-98 (108)
90 TIGR00606 rad50 rad50. This fa 52.4 1.4E+02 0.0031 38.2 12.9 32 511-542 822-853 (1311)
91 KOG0995 Centromere-associated 52.3 2.4E+02 0.0052 33.0 13.3 28 491-520 238-265 (581)
92 PRK11281 hypothetical protein; 52.1 2.2E+02 0.0048 36.1 14.1 43 497-539 62-108 (1113)
93 PRK13922 rod shape-determining 52.1 2.5E+02 0.0053 29.3 12.7 39 520-568 71-109 (276)
94 PF02403 Seryl_tRNA_N: Seryl-t 51.6 95 0.0021 27.6 8.3 29 585-613 76-104 (108)
95 PRK09173 F0F1 ATP synthase sub 51.5 2.2E+02 0.0049 27.1 13.9 24 558-584 112-135 (159)
96 PF03114 BAR: BAR domain; Int 51.4 2.3E+02 0.0049 27.4 11.7 16 514-529 168-183 (229)
97 PRK03918 chromosome segregatio 51.3 2E+02 0.0043 34.8 13.4 25 517-541 199-223 (880)
98 TIGR00634 recN DNA repair prot 51.0 1.5E+02 0.0032 34.3 11.9 27 588-614 344-370 (563)
99 PRK07521 flgK flagellar hook-a 50.5 1.8E+02 0.004 33.0 12.3 122 476-611 77-206 (483)
100 TIGR02492 flgK_ends flagellar 50.5 2.3E+02 0.005 30.4 12.5 123 476-611 83-212 (322)
101 PRK10869 recombination and rep 50.2 1.5E+02 0.0033 34.4 11.7 27 588-614 339-365 (553)
102 COG1196 Smc Chromosome segrega 50.1 1.8E+02 0.004 36.7 13.3 16 282-297 535-550 (1163)
103 PF08441 Integrin_alpha2: Inte 49.9 4E+02 0.0087 29.6 17.2 86 38-138 185-271 (457)
104 KOG4673 Transcription factor T 49.9 1.3E+02 0.0028 35.9 10.8 122 491-614 491-636 (961)
105 PF06785 UPF0242: Uncharacteri 49.8 2.3E+02 0.0049 31.2 11.9 37 525-563 123-159 (401)
106 TIGR01005 eps_transp_fam exopo 49.3 2.4E+02 0.0052 33.7 13.6 89 511-615 313-401 (754)
107 PRK06665 flgK flagellar hook-a 49.2 1.9E+02 0.0041 34.2 12.4 122 476-611 95-223 (627)
108 PF15397 DUF4618: Domain of un 49.1 3.4E+02 0.0073 28.8 12.9 66 478-543 28-99 (258)
109 PF13166 AAA_13: AAA domain 49.0 2.3E+02 0.0049 33.4 13.2 22 513-534 324-345 (712)
110 PRK07191 flgK flagellar hook-a 48.6 2.1E+02 0.0047 32.2 12.4 122 476-611 84-211 (456)
111 KOG1937 Uncharacterized conser 48.5 3.4E+02 0.0073 31.0 13.3 32 512-543 397-428 (521)
112 PRK09174 F0F1 ATP synthase sub 48.4 3.1E+02 0.0066 27.8 14.5 12 473-484 72-83 (204)
113 PF04012 PspA_IM30: PspA/IM30 48.2 2.8E+02 0.0061 27.8 12.1 43 498-542 33-75 (221)
114 COG1340 Uncharacterized archae 47.9 1.9E+02 0.0042 31.1 11.1 65 478-542 180-252 (294)
115 KOG4302 Microtubule-associated 47.8 2.1E+02 0.0047 34.1 12.4 57 476-544 27-87 (660)
116 KOG0994 Extracellular matrix g 47.8 3.6E+02 0.0078 34.4 14.2 13 556-568 1512-1524(1758)
117 TIGR03017 EpsF chain length de 47.4 1.6E+02 0.0034 32.6 11.0 19 420-438 130-148 (444)
118 KOG0979 Structural maintenance 47.4 4.2E+02 0.0092 33.1 14.8 116 476-610 296-411 (1072)
119 PF13514 AAA_27: AAA domain 47.3 1.1E+02 0.0025 38.3 10.8 77 491-567 153-230 (1111)
120 PF11559 ADIP: Afadin- and alp 46.9 2.5E+02 0.0055 26.5 10.9 104 477-601 48-151 (151)
121 PRK06799 flgK flagellar hook-a 46.9 2.4E+02 0.0052 31.7 12.3 120 476-611 88-214 (431)
122 PF04111 APG6: Autophagy prote 46.8 96 0.0021 33.4 8.9 22 593-614 109-130 (314)
123 PF10805 DUF2730: Protein of u 46.7 1.7E+02 0.0037 26.5 9.2 58 479-540 37-94 (106)
124 KOG0996 Structural maintenance 46.6 2.2E+02 0.0048 36.0 12.5 57 509-567 933-989 (1293)
125 TIGR02168 SMC_prok_B chromosom 46.1 1.9E+02 0.0042 35.5 12.5 9 50-58 4-12 (1179)
126 PF07464 ApoLp-III: Apolipopho 46.0 3E+02 0.0064 26.9 11.8 19 498-516 10-28 (155)
127 PF12325 TMF_TATA_bd: TATA ele 45.4 2.6E+02 0.0057 26.1 11.5 82 478-568 31-112 (120)
128 PF07851 TMPIT: TMPIT-like pro 45.4 1.3E+02 0.0027 33.0 9.4 27 516-542 37-63 (330)
129 TIGR02169 SMC_prok_A chromosom 44.9 2.1E+02 0.0045 35.4 12.5 8 50-57 4-11 (1164)
130 PF10212 TTKRSYEDQ: Predicted 44.9 3E+02 0.0065 31.9 12.6 60 479-544 422-481 (518)
131 PF08702 Fib_alpha: Fibrinogen 44.8 2.9E+02 0.0064 26.5 13.6 34 579-612 95-133 (146)
132 PF04156 IncA: IncA protein; 44.7 3.1E+02 0.0066 26.7 13.8 10 594-603 176-185 (191)
133 PRK09841 cryptic autophosphory 44.6 4.2E+02 0.009 31.8 14.5 64 497-566 283-353 (726)
134 TIGR02169 SMC_prok_A chromosom 44.4 1.9E+02 0.0041 35.7 12.1 12 233-244 3-14 (1164)
135 PF13851 GAS: Growth-arrest sp 44.1 1.8E+02 0.0039 29.4 9.8 45 470-515 101-145 (201)
136 cd07673 F-BAR_FCHO2 The F-BAR 44.1 4.1E+02 0.0088 28.0 14.0 69 472-542 19-91 (269)
137 PRK12705 hypothetical protein; 44.1 5.7E+02 0.012 29.7 15.8 11 441-451 12-22 (508)
138 cd07621 BAR_SNX5_6 The Bin/Amp 44.0 1.5E+02 0.0033 30.4 9.4 18 488-505 124-141 (219)
139 PF10112 Halogen_Hydrol: 5-bro 44.0 64 0.0014 32.0 6.6 50 524-575 74-123 (199)
140 KOG0161 Myosin class II heavy 43.9 2.6E+02 0.0057 37.4 13.3 10 405-414 750-759 (1930)
141 cd07663 BAR_SNX5 The Bin/Amphi 43.5 2.7E+02 0.0058 28.7 11.0 20 587-606 195-214 (218)
142 KOG1962 B-cell receptor-associ 43.0 4E+02 0.0086 27.5 13.3 9 447-455 105-113 (216)
143 PRK10807 paraquat-inducible pr 42.9 2.9E+02 0.0063 32.2 12.5 27 589-615 499-525 (547)
144 PRK04778 septation ring format 42.8 1.1E+02 0.0024 35.6 9.1 128 472-611 196-331 (569)
145 PRK02224 chromosome segregatio 42.7 2E+02 0.0044 34.8 11.8 10 49-58 4-13 (880)
146 PRK05683 flgK flagellar hook-a 42.4 2.6E+02 0.0056 33.5 12.2 117 479-611 87-211 (676)
147 PRK06569 F0F1 ATP synthase sub 42.3 3.4E+02 0.0073 26.6 10.9 10 559-568 121-130 (155)
148 TIGR03321 alt_F1F0_F0_B altern 42.3 2.6E+02 0.0057 28.8 11.0 47 556-608 113-159 (246)
149 PRK07353 F0F1 ATP synthase sub 42.0 2.9E+02 0.0062 25.6 12.4 12 439-450 9-20 (140)
150 PF05546 She9_MDM33: She9 / Md 42.0 4E+02 0.0088 27.3 13.4 120 485-613 6-129 (207)
151 TIGR03079 CH4_NH3mon_ox_B meth 42.0 1.3E+02 0.0028 33.3 8.8 21 115-135 333-353 (399)
152 PF11570 E2R135: Coiled-coil r 41.7 2.2E+02 0.0047 27.2 9.1 46 524-571 14-59 (136)
153 KOG0996 Structural maintenance 41.6 3.3E+02 0.0072 34.6 12.9 35 510-544 439-473 (1293)
154 PF14276 DUF4363: Domain of un 41.5 2.1E+02 0.0046 26.0 9.1 84 478-566 27-112 (121)
155 PF03978 Borrelia_REV: Borreli 41.3 2.1E+02 0.0045 28.1 9.2 19 597-615 139-157 (160)
156 PF15450 DUF4631: Domain of un 41.3 4.8E+02 0.01 30.3 13.4 26 588-613 446-471 (531)
157 KOG1666 V-SNARE [Intracellular 40.9 1.2E+02 0.0026 31.3 7.8 83 522-610 7-92 (220)
158 PRK15041 methyl-accepting chem 40.8 5.6E+02 0.012 29.4 14.4 18 599-616 354-371 (554)
159 cd07662 BAR_SNX6 The Bin/Amphi 40.5 3.6E+02 0.0077 27.9 11.3 47 495-542 112-160 (218)
160 PRK10884 SH3 domain-containing 40.1 1.4E+02 0.003 30.4 8.3 21 590-610 146-166 (206)
161 KOG0972 Huntingtin interacting 40.1 3.8E+02 0.0082 29.1 11.6 46 514-565 255-300 (384)
162 PF10211 Ax_dynein_light: Axon 40.0 3.9E+02 0.0085 26.6 12.2 41 520-566 122-162 (189)
163 KOG0946 ER-Golgi vesicle-tethe 39.7 2.4E+02 0.0052 34.4 11.0 71 533-606 793-864 (970)
164 PF04642 DUF601: Protein of un 39.6 54 0.0012 34.4 5.3 35 574-609 232-271 (311)
165 KOG1937 Uncharacterized conser 39.6 4.9E+02 0.011 29.8 12.8 25 589-613 402-426 (521)
166 PF10989 DUF2808: Protein of u 39.6 2.3E+02 0.0049 26.9 9.3 27 111-137 88-114 (146)
167 cd07665 BAR_SNX1 The Bin/Amphi 39.4 2.6E+02 0.0057 29.0 10.3 39 499-537 106-145 (234)
168 PF12128 DUF3584: Protein of u 39.3 2.5E+02 0.0053 35.8 12.1 28 238-265 5-36 (1201)
169 cd00176 SPEC Spectrin repeats, 39.3 3.2E+02 0.007 25.6 10.5 27 588-614 184-210 (213)
170 PF07106 TBPIP: Tat binding pr 39.2 2.2E+02 0.0048 27.5 9.4 83 512-605 73-160 (169)
171 COG0497 RecN ATPase involved i 38.5 5.7E+02 0.012 30.1 13.7 60 497-556 244-304 (557)
172 PRK13428 F0F1 ATP synthase sub 38.0 3.5E+02 0.0076 30.6 12.0 12 599-610 180-191 (445)
173 PF01486 K-box: K-box region; 38.0 2.1E+02 0.0045 25.3 8.3 89 517-615 11-100 (100)
174 PRK07739 flgK flagellar hook-a 37.8 3.6E+02 0.0079 30.9 12.2 119 477-611 96-223 (507)
175 PF11101 DUF2884: Protein of u 37.7 2.6E+02 0.0055 28.8 10.0 37 530-568 183-219 (229)
176 PF07743 HSCB_C: HSCB C-termin 37.4 1.7E+02 0.0037 24.5 7.2 39 501-539 14-52 (78)
177 PF07889 DUF1664: Protein of u 37.2 1.8E+02 0.004 27.4 8.0 21 516-536 59-79 (126)
178 PRK13454 F0F1 ATP synthase sub 36.9 4.1E+02 0.0089 26.2 10.9 12 474-485 51-62 (181)
179 COG1196 Smc Chromosome segrega 36.8 4.5E+02 0.0097 33.4 13.8 16 594-609 881-896 (1163)
180 PRK14472 F0F1 ATP synthase sub 36.8 4.1E+02 0.0088 25.8 11.8 46 556-607 126-171 (175)
181 PRK10780 periplasmic chaperone 36.7 79 0.0017 30.6 5.8 21 524-544 56-76 (165)
182 PRK08147 flgK flagellar hook-a 36.4 4E+02 0.0087 30.8 12.4 121 477-611 86-214 (547)
183 TIGR03017 EpsF chain length de 36.4 5.3E+02 0.011 28.4 13.0 31 512-542 280-310 (444)
184 PF05227 CHASE3: CHASE3 domain 36.3 3.2E+02 0.0069 24.5 12.5 75 484-565 9-83 (138)
185 PF05405 Mt_ATP-synt_B: Mitoch 36.2 2E+02 0.0042 27.6 8.4 25 549-574 110-134 (163)
186 TIGR01000 bacteriocin_acc bact 36.2 6.3E+02 0.014 28.3 13.6 25 589-613 290-314 (457)
187 PF06248 Zw10: Centromere/kine 36.1 5E+02 0.011 30.3 13.2 42 524-565 52-93 (593)
188 TIGR01843 type_I_hlyD type I s 35.9 2.3E+02 0.0049 30.6 9.8 10 405-414 68-77 (423)
189 KOG2264 Exostosin EXT1L [Signa 35.7 90 0.002 36.4 6.7 58 512-572 94-151 (907)
190 TIGR03752 conj_TIGR03752 integ 35.5 1.5E+02 0.0033 33.9 8.4 85 514-613 55-139 (472)
191 TIGR01837 PHA_granule_1 poly(h 35.3 3.6E+02 0.0079 24.9 12.8 96 497-610 21-116 (118)
192 TIGR02338 gimC_beta prefoldin, 35.2 1.8E+02 0.0038 26.3 7.5 88 513-615 19-106 (110)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.1 1.9E+02 0.0042 26.9 7.9 17 593-609 101-117 (132)
194 PF05753 TRAP_beta: Translocon 35.0 1.3E+02 0.0028 30.0 7.1 21 46-66 39-59 (181)
195 PF15556 Zwint: ZW10 interacto 35.0 1.3E+02 0.0028 30.8 7.0 42 525-568 66-107 (252)
196 smart00502 BBC B-Box C-termina 34.8 3.1E+02 0.0068 24.0 11.4 95 479-584 5-103 (127)
197 PF02841 GBP_C: Guanylate-bind 34.8 1.1E+02 0.0024 32.3 7.0 16 594-609 281-296 (297)
198 PF06705 SF-assemblin: SF-asse 34.7 5.2E+02 0.011 26.5 13.3 24 588-611 166-189 (247)
199 cd07650 F-BAR_Syp1p_like The F 34.7 3.8E+02 0.0083 27.4 10.7 70 472-543 12-87 (228)
200 PF06810 Phage_GP20: Phage min 34.6 2.4E+02 0.0053 27.3 8.7 43 517-562 26-68 (155)
201 KOG3433 Protein involved in me 34.5 68 0.0015 32.3 4.9 61 548-609 74-135 (203)
202 PF10168 Nup88: Nuclear pore c 34.4 6.2E+02 0.013 30.6 13.7 24 588-611 690-713 (717)
203 PRK09039 hypothetical protein; 34.3 3.9E+02 0.0085 29.1 11.3 50 513-567 153-202 (343)
204 PRK05431 seryl-tRNA synthetase 33.9 1.1E+02 0.0024 34.3 7.1 28 586-613 76-103 (425)
205 PF13757 VIT_2: Vault protein 33.8 2.9E+02 0.0063 24.0 8.1 56 28-85 11-67 (78)
206 PRK13461 F0F1 ATP synthase sub 33.7 4.3E+02 0.0092 25.2 11.3 27 556-585 113-139 (159)
207 PRK04863 mukB cell division pr 33.5 4.6E+02 0.0099 34.5 13.1 52 234-296 9-61 (1486)
208 PRK13460 F0F1 ATP synthase sub 33.4 4.6E+02 0.0099 25.5 13.3 12 557-568 125-136 (173)
209 KOG0979 Structural maintenance 33.4 4.6E+02 0.01 32.8 12.3 18 429-446 157-174 (1072)
210 PRK14471 F0F1 ATP synthase sub 33.3 4.4E+02 0.0095 25.2 14.0 26 556-584 116-141 (164)
211 PF06705 SF-assemblin: SF-asse 33.2 5.5E+02 0.012 26.4 13.7 12 497-508 36-47 (247)
212 PF05384 DegS: Sensor protein 33.2 2.9E+02 0.0063 27.1 9.0 38 525-568 27-64 (159)
213 PLN02678 seryl-tRNA synthetase 33.2 1.2E+02 0.0026 34.4 7.3 26 588-613 83-108 (448)
214 COG4026 Uncharacterized protei 33.2 2.3E+02 0.005 29.5 8.4 42 525-568 131-172 (290)
215 PF09325 Vps5: Vps5 C terminal 33.0 4.1E+02 0.0089 26.4 10.5 114 476-604 113-232 (236)
216 PF04314 DUF461: Protein of un 32.8 2.1E+02 0.0045 25.8 7.5 80 49-134 18-101 (110)
217 PF13166 AAA_13: AAA domain 32.8 4E+02 0.0086 31.4 11.8 13 601-613 459-471 (712)
218 PRK09793 methyl-accepting prot 32.8 7.9E+02 0.017 28.0 14.7 23 434-456 6-28 (533)
219 KOG4234 TPR repeat-containing 32.6 92 0.002 32.2 5.5 54 488-544 169-225 (271)
220 PRK13455 F0F1 ATP synthase sub 32.5 4.9E+02 0.011 25.5 14.9 29 478-506 62-90 (184)
221 TIGR03545 conserved hypothetic 32.1 6.5E+02 0.014 29.5 13.1 74 496-571 192-270 (555)
222 PRK15321 putative type III sec 31.8 2E+02 0.0043 26.2 6.9 74 494-567 16-99 (120)
223 PF10158 LOH1CR12: Tumour supp 31.7 3.7E+02 0.008 25.5 9.1 104 459-582 10-113 (131)
224 PF04912 Dynamitin: Dynamitin 31.6 4.8E+02 0.01 28.7 11.5 20 548-567 315-334 (388)
225 PF05667 DUF812: Protein of un 31.5 3.6E+02 0.0078 31.9 10.9 15 600-614 515-529 (594)
226 TIGR03007 pepcterm_ChnLen poly 31.4 2.3E+02 0.0051 31.9 9.3 22 523-544 252-273 (498)
227 PF06160 EzrA: Septation ring 31.1 7.7E+02 0.017 28.7 13.6 24 521-544 347-370 (560)
228 PF05700 BCAS2: Breast carcino 30.9 5.8E+02 0.013 25.9 11.2 115 475-605 101-218 (221)
229 PF01601 Corona_S2: Coronaviru 30.9 3.1E+02 0.0068 32.3 10.0 62 513-586 268-330 (610)
230 PF14257 DUF4349: Domain of un 30.7 2.1E+02 0.0046 29.5 8.2 48 561-612 185-232 (262)
231 PRK06945 flgK flagellar hook-a 30.6 5.6E+02 0.012 30.5 12.5 119 478-611 87-213 (651)
232 PF09403 FadA: Adhesion protei 30.1 3.8E+02 0.0083 25.3 8.9 95 509-616 18-115 (126)
233 PF06248 Zw10: Centromere/kine 30.0 5.7E+02 0.012 29.8 12.3 43 521-566 72-114 (593)
234 cd07648 F-BAR_FCHO The F-BAR ( 30.0 6.3E+02 0.014 26.0 12.9 58 472-531 12-73 (261)
235 COG1480 Predicted membrane-ass 29.9 3.6E+02 0.0077 32.4 10.4 122 434-567 17-160 (700)
236 TIGR02449 conserved hypothetic 29.8 1.4E+02 0.0031 25.1 5.3 55 550-614 5-59 (65)
237 COG1256 FlgK Flagellar hook-as 29.6 4.2E+02 0.0091 31.0 11.0 121 476-610 87-214 (552)
238 PF00611 FCH: Fes/CIP4, and EF 29.6 3.3E+02 0.0072 22.7 8.9 33 478-510 20-52 (91)
239 PF06037 DUF922: Bacterial pro 29.5 5E+02 0.011 25.3 10.0 91 420-542 55-146 (161)
240 KOG0933 Structural maintenance 29.3 8.4E+02 0.018 30.8 13.4 31 514-544 409-439 (1174)
241 KOG0980 Actin-binding protein 29.2 7.8E+02 0.017 30.6 13.0 21 241-262 128-148 (980)
242 KOG4637 Adaptor for phosphoino 29.1 6.5E+02 0.014 28.2 11.5 67 478-544 140-207 (464)
243 PF12761 End3: Actin cytoskele 29.0 4.5E+02 0.0097 26.8 9.7 95 457-566 84-178 (195)
244 PF04065 Not3: Not1 N-terminal 29.0 4.5E+02 0.0098 27.4 10.0 52 483-534 40-97 (233)
245 KOG2398 Predicted proline-seri 28.7 4.3E+02 0.0093 31.4 10.9 29 483-511 8-36 (611)
246 KOG2662 Magnesium transporters 28.5 8.5E+02 0.018 27.5 12.5 83 525-615 220-329 (414)
247 TIGR02894 DNA_bind_RsfA transc 28.5 5.9E+02 0.013 25.2 11.8 47 480-528 13-64 (161)
248 COG5293 Predicted ATPase [Gene 28.5 3.4E+02 0.0073 31.2 9.4 60 484-544 316-375 (591)
249 PF04100 Vps53_N: Vps53-like, 28.4 4E+02 0.0087 29.5 10.2 27 499-527 82-108 (383)
250 PRK12715 flgK flagellar hook-a 28.4 7.6E+02 0.016 29.5 13.0 117 477-611 85-207 (649)
251 CHL00019 atpF ATP synthase CF0 28.2 5.8E+02 0.013 25.0 14.1 48 556-609 132-179 (184)
252 PRK12714 flgK flagellar hook-a 28.2 6.5E+02 0.014 29.8 12.5 118 478-611 86-209 (624)
253 PRK13676 hypothetical protein; 28.2 4.2E+02 0.0091 23.9 8.7 46 496-541 5-52 (114)
254 PF05791 Bacillus_HBL: Bacillu 27.9 2.4E+02 0.0051 28.0 7.6 23 522-544 139-161 (184)
255 KOG0612 Rho-associated, coiled 27.9 7.3E+02 0.016 31.9 12.8 77 487-566 511-602 (1317)
256 TIGR01834 PHA_synth_III_E poly 27.8 8.3E+02 0.018 26.7 14.5 29 587-615 286-314 (320)
257 PF06160 EzrA: Septation ring 27.6 5.7E+02 0.012 29.8 11.7 22 516-537 159-180 (560)
258 KOG0804 Cytoplasmic Zn-finger 27.6 8.3E+02 0.018 28.0 12.2 24 395-418 265-289 (493)
259 PF15642 Tox-ODYAM1: Toxin in 27.6 7.8E+02 0.017 26.5 11.4 28 588-615 143-170 (385)
260 PRK10807 paraquat-inducible pr 27.5 2.8E+02 0.0061 32.3 9.2 55 528-586 476-534 (547)
261 cd07653 F-BAR_CIP4-like The F- 27.4 6.7E+02 0.014 25.5 13.2 75 480-559 18-101 (251)
262 PF12128 DUF3584: Protein of u 27.4 6.4E+02 0.014 32.3 12.9 25 588-612 730-754 (1201)
263 PF06013 WXG100: Proteins of 1 27.2 3.3E+02 0.0072 21.9 9.9 65 479-543 9-76 (86)
264 PF04744 Monooxygenase_B: Mono 27.2 3.3E+02 0.0071 30.4 8.9 82 31-135 251-334 (381)
265 PF05278 PEARLI-4: Arabidopsis 27.1 7.9E+02 0.017 26.2 12.3 66 478-543 153-218 (269)
266 TIGR02481 hemeryth_dom hemeryt 27.1 3.3E+02 0.007 24.5 7.9 30 515-544 5-34 (126)
267 TIGR00293 prefoldin, archaeal 27.0 4.8E+02 0.01 23.7 9.4 54 490-543 25-111 (126)
268 PF01920 Prefoldin_2: Prefoldi 27.0 3.3E+02 0.0071 23.6 7.7 18 525-542 5-22 (106)
269 PF10481 CENP-F_N: Cenp-F N-te 26.9 4.8E+02 0.01 28.0 9.7 31 478-508 19-52 (307)
270 PF06008 Laminin_I: Laminin Do 26.8 7.2E+02 0.016 25.7 11.8 57 520-576 89-151 (264)
271 PF06005 DUF904: Protein of un 26.7 3.3E+02 0.0072 23.2 7.2 29 588-616 44-72 (72)
272 PRK05431 seryl-tRNA synthetase 26.7 3.1E+02 0.0067 30.8 9.1 58 481-542 39-97 (425)
273 PF09304 Cortex-I_coil: Cortex 26.7 2.9E+02 0.0062 25.6 7.1 42 513-560 25-66 (107)
274 cd07652 F-BAR_Rgd1 The F-BAR ( 26.6 7.1E+02 0.015 25.5 12.9 36 472-509 12-47 (234)
275 PRK00409 recombination and DNA 26.6 4.5E+02 0.0097 32.0 11.0 48 495-543 548-595 (782)
276 PF08580 KAR9: Yeast cortical 26.6 8.1E+02 0.018 29.5 12.8 27 588-614 342-369 (683)
277 PF13747 DUF4164: Domain of un 26.6 4.5E+02 0.0097 23.2 9.9 50 516-568 6-55 (89)
278 PF09537 DUF2383: Domain of un 26.6 4.5E+02 0.0097 23.2 8.6 60 482-545 2-61 (111)
279 PF00038 Filament: Intermediat 26.6 7.6E+02 0.016 25.8 13.1 43 492-536 93-135 (312)
280 TIGR03042 PS_II_psbQ_bact phot 26.2 3.6E+02 0.0078 26.1 8.1 74 456-541 16-89 (142)
281 KOG4673 Transcription factor T 26.2 5E+02 0.011 31.3 10.6 27 284-310 234-260 (961)
282 PF11744 ALMT: Aluminium activ 26.0 9.8E+02 0.021 26.9 12.8 103 512-616 282-405 (406)
283 TIGR02956 TMAO_torS TMAO reduc 26.0 1.2E+03 0.027 28.1 16.2 40 500-539 59-98 (968)
284 PF13805 Pil1: Eisosome compon 25.9 2.7E+02 0.006 29.6 7.9 98 509-609 55-157 (271)
285 PF06483 ChiC: Chitinase C; I 25.9 1.2E+02 0.0026 30.3 5.0 96 31-137 33-143 (180)
286 PRK14127 cell division protein 25.9 5.3E+02 0.012 23.8 9.0 32 512-543 38-69 (109)
287 COG4477 EzrA Negative regulato 25.8 5.1E+02 0.011 30.3 10.4 155 440-614 6-181 (570)
288 cd07648 F-BAR_FCHO The F-BAR ( 25.8 6.1E+02 0.013 26.1 10.5 21 522-542 161-181 (261)
289 PF04597 Ribophorin_I: Ribopho 25.8 9.9E+02 0.022 26.9 16.5 160 227-399 3-172 (432)
290 cd07596 BAR_SNX The Bin/Amphip 25.7 6E+02 0.013 24.5 10.0 100 477-584 96-217 (218)
291 PF07888 CALCOCO1: Calcium bin 25.7 1.1E+03 0.025 27.6 13.9 21 555-575 378-398 (546)
292 PF02370 M: M protein repeat; 25.6 1.3E+02 0.0028 20.0 3.4 18 518-535 1-18 (21)
293 KOG0963 Transcription factor/C 25.5 6.8E+02 0.015 29.7 11.5 34 511-544 278-311 (629)
294 TIGR01000 bacteriocin_acc bact 25.5 9.9E+02 0.021 26.8 15.1 24 440-463 24-47 (457)
295 PF10368 YkyA: Putative cell-w 25.4 7.2E+02 0.016 25.2 11.8 28 478-505 65-92 (204)
296 PF05008 V-SNARE: Vesicle tran 25.4 4E+02 0.0086 22.2 8.3 72 528-611 2-75 (79)
297 KOG1510 RNA polymerase II holo 25.3 6.2E+02 0.013 24.4 9.9 53 514-568 52-104 (139)
298 PF07445 priB_priC: Primosomal 25.3 5.6E+02 0.012 25.2 9.6 114 498-613 47-168 (173)
299 PF03962 Mnd1: Mnd1 family; I 25.2 5.6E+02 0.012 25.5 9.7 51 517-567 68-122 (188)
300 PRK03947 prefoldin subunit alp 25.0 5.6E+02 0.012 23.8 10.8 29 515-543 91-119 (140)
301 PF08397 IMD: IRSp53/MIM homol 24.9 7.2E+02 0.016 25.0 14.8 68 476-543 12-83 (219)
302 PF00038 Filament: Intermediat 24.8 8.2E+02 0.018 25.6 12.2 24 588-611 267-290 (312)
303 PRK00409 recombination and DNA 24.6 6.9E+02 0.015 30.5 12.0 12 482-493 503-514 (782)
304 PF04740 LXG: LXG domain of WX 24.6 6.6E+02 0.014 24.5 10.2 64 478-543 4-68 (204)
305 COG3206 GumC Uncharacterized p 24.4 8.1E+02 0.018 27.4 11.9 85 480-567 242-332 (458)
306 PF05667 DUF812: Protein of un 24.4 5.3E+02 0.011 30.5 10.6 107 475-584 445-568 (594)
307 KOG4438 Centromere-associated 24.4 1.1E+03 0.024 26.9 14.8 93 434-540 72-167 (446)
308 PF09969 DUF2203: Uncharacteri 24.3 5E+02 0.011 24.2 8.6 9 478-486 14-22 (120)
309 COG1842 PspA Phage shock prote 24.3 8E+02 0.017 25.3 12.2 89 513-611 47-141 (225)
310 PF11221 Med21: Subunit 21 of 24.3 6.2E+02 0.013 24.0 14.4 54 512-567 63-116 (144)
311 PF15233 SYCE1: Synaptonemal c 24.2 6.4E+02 0.014 24.2 10.4 58 513-574 15-72 (134)
312 KOG0612 Rho-associated, coiled 24.2 6.2E+02 0.013 32.5 11.3 45 294-339 356-403 (1317)
313 KOG2391 Vacuolar sorting prote 24.2 2.5E+02 0.0054 30.9 7.3 56 479-539 212-267 (365)
314 PF15450 DUF4631: Domain of un 24.1 1.2E+03 0.026 27.3 12.9 44 513-558 346-389 (531)
315 KOG3048 Molecular chaperone Pr 24.1 1.2E+02 0.0025 29.5 4.3 24 592-615 103-126 (153)
316 cd00632 Prefoldin_beta Prefold 24.1 4.3E+02 0.0093 23.5 7.9 95 513-616 1-103 (105)
317 COG4717 Uncharacterized conser 24.1 1.5E+03 0.032 28.3 14.4 31 512-542 565-595 (984)
318 KOG0994 Extracellular matrix g 24.1 4.4E+02 0.0096 33.7 9.9 64 497-567 1180-1244(1758)
319 TIGR02411 leuko_A4_hydro leuko 24.1 1.1E+03 0.024 27.8 13.3 90 31-137 15-104 (601)
320 TIGR02977 phageshock_pspA phag 24.0 7.6E+02 0.016 25.0 11.4 44 496-541 32-75 (219)
321 PRK12705 hypothetical protein; 24.0 1.2E+03 0.026 27.2 15.3 17 597-613 150-166 (508)
322 KOG4570 Uncharacterized conser 24.0 3.2E+02 0.007 30.1 8.1 98 509-615 269-378 (418)
323 PF05377 FlaC_arch: Flagella a 24.0 99 0.0021 25.2 3.3 29 587-615 4-32 (55)
324 PF10174 Cast: RIM-binding pro 23.9 7.2E+02 0.016 30.4 11.8 34 582-615 547-580 (775)
325 smart00264 BAG BAG domains, pr 23.9 4.5E+02 0.0098 22.5 7.6 23 593-615 55-77 (79)
326 PF09177 Syntaxin-6_N: Syntaxi 23.8 3.5E+02 0.0077 23.7 7.2 31 512-542 33-63 (97)
327 TIGR02680 conserved hypothetic 23.7 7.4E+02 0.016 32.2 12.6 30 494-523 824-853 (1353)
328 PF10337 DUF2422: Protein of u 23.6 8E+02 0.017 27.5 11.7 27 514-540 258-284 (459)
329 PF11932 DUF3450: Protein of u 23.5 4.7E+02 0.01 26.9 9.2 120 480-611 20-141 (251)
330 KOG3026 Splicing factor SPF30 23.5 1.3E+02 0.0028 31.5 4.8 37 525-568 3-39 (262)
331 cd07597 BAR_SNX8 The Bin/Amphi 23.5 8.3E+02 0.018 25.2 14.8 21 548-568 116-136 (246)
332 PF13949 ALIX_LYPXL_bnd: ALIX 23.4 8.3E+02 0.018 25.2 11.5 66 478-543 201-266 (296)
333 PF04108 APG17: Autophagy prot 23.4 7.5E+02 0.016 27.6 11.3 23 478-500 207-229 (412)
334 KOG0976 Rho/Rac1-interacting s 23.4 9.3E+02 0.02 29.8 12.1 106 477-614 99-204 (1265)
335 KOG0980 Actin-binding protein 23.3 1.2E+03 0.027 28.9 13.3 62 483-544 388-457 (980)
336 KOG2662 Magnesium transporters 23.1 4.5E+02 0.0098 29.6 9.2 31 514-544 183-213 (414)
337 PRK04778 septation ring format 23.0 1.2E+03 0.027 27.0 14.3 25 515-539 314-338 (569)
338 COG4942 Membrane-bound metallo 22.9 1.1E+03 0.025 26.6 12.8 70 474-543 56-126 (420)
339 PRK10698 phage shock protein P 22.9 7.8E+02 0.017 25.2 10.5 44 496-541 32-75 (222)
340 COG5391 Phox homology (PX) dom 22.8 8.5E+02 0.019 28.4 11.8 39 472-510 288-326 (524)
341 PHA03161 hypothetical protein; 22.7 7.3E+02 0.016 24.3 9.8 58 482-539 9-82 (150)
342 KOG4674 Uncharacterized conser 22.5 1.2E+03 0.026 31.5 13.8 27 589-615 237-263 (1822)
343 PF04108 APG17: Autophagy prot 22.5 1.1E+03 0.024 26.3 13.0 60 483-542 250-314 (412)
344 KOG3976 Mitochondrial F1F0-ATP 22.4 9.3E+02 0.02 25.4 12.9 12 479-490 123-134 (247)
345 cd00916 Npc2_like Niemann-Pick 22.4 4.3E+02 0.0094 24.3 7.8 65 114-179 34-109 (123)
346 PRK06231 F0F1 ATP synthase sub 22.3 5.7E+02 0.012 25.8 9.2 137 441-581 55-205 (205)
347 cd07680 F-BAR_PACSIN1 The F-BA 22.3 9.3E+02 0.02 25.4 13.0 77 478-559 16-100 (258)
348 PF05911 DUF869: Plant protein 22.3 1E+03 0.022 29.1 12.7 25 588-612 731-755 (769)
349 KOG2391 Vacuolar sorting prote 22.3 6.4E+02 0.014 27.9 9.9 59 472-540 217-275 (365)
350 KOG0018 Structural maintenance 22.2 1E+03 0.022 30.2 12.6 70 485-566 653-722 (1141)
351 PF15456 Uds1: Up-regulated Du 22.1 6.6E+02 0.014 23.6 9.0 28 587-614 78-105 (124)
352 PF13864 Enkurin: Calmodulin-b 22.1 4.1E+02 0.009 23.5 7.3 51 487-537 43-93 (98)
353 KOG4603 TBP-1 interacting prot 22.0 7.2E+02 0.016 25.0 9.3 66 470-540 80-145 (201)
354 PF00521 DNA_topoisoIV: DNA gy 21.8 3.9E+02 0.0085 29.9 8.7 110 480-614 303-415 (426)
355 PF10234 Cluap1: Clusterin-ass 21.8 9.9E+02 0.021 25.5 11.1 28 516-543 188-215 (267)
356 PF07798 DUF1640: Protein of u 21.6 7.7E+02 0.017 24.1 13.4 21 590-610 120-140 (177)
357 smart00150 SPEC Spectrin repea 21.2 4.6E+02 0.01 21.4 8.2 20 594-613 74-93 (101)
358 PF07195 FliD_C: Flagellar hoo 21.1 3.1E+02 0.0066 28.1 7.2 64 480-544 146-219 (239)
359 PRK05658 RNA polymerase sigma 20.9 1.1E+03 0.025 27.6 12.7 24 484-507 218-241 (619)
360 KOG0018 Structural maintenance 20.9 1.4E+03 0.031 29.0 13.4 141 457-609 795-948 (1141)
361 PRK03578 hscB co-chaperone Hsc 20.9 4.7E+02 0.01 25.9 8.1 32 507-538 110-141 (176)
362 PLN02372 violaxanthin de-epoxi 20.8 5.5E+02 0.012 29.1 9.2 98 456-584 349-449 (455)
363 TIGR01386 cztS_silS_copS heavy 20.6 1E+03 0.023 25.3 12.9 20 522-541 282-301 (457)
364 PRK09841 cryptic autophosphory 20.6 1E+03 0.022 28.5 12.4 51 517-567 266-323 (726)
365 COG0419 SbcC ATPase involved i 20.4 1E+03 0.022 29.3 12.6 18 476-493 602-619 (908)
366 PHA02090 hypothetical protein 20.3 48 0.001 27.8 0.9 13 326-338 48-61 (79)
367 PF14399 Transpep_BrtH: NlpC/p 20.1 7.7E+02 0.017 25.6 10.1 88 479-568 221-316 (317)
No 1
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-159 Score=1269.15 Aligned_cols=578 Identities=44% Similarity=0.675 Sum_probs=544.9
Q ss_pred ccCccCCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCccccccccccee
Q 007137 21 FASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVE 100 (616)
Q Consensus 21 ~~~~~~~~~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~ 100 (616)
|++.+.++|+|.|++|||||++|+||++++++++|+|++|+++|.+++++.+..+||+++|...+++++. ...+++.
T Consensus 23 ~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~~---~l~~s~~ 99 (602)
T KOG2291|consen 23 AASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVAFTEGKKKT---LLKLSVN 99 (602)
T ss_pred cccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEeeccCcccc---ccccccC
Confidence 3667789999999999999999999999999999999999999999999999999999999877766542 2456667
Q ss_pred eccCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEecC
Q 007137 101 NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPE 180 (616)
Q Consensus 101 ~~~~~~~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SPY~T~~q~t~v~l~s 180 (616)
+.+.++. ++ .+|.|+||.|+.||++++|.|+++++|+++|+|++|+|+|+|+|+|.||+|++|||.|++|+|+|++||
T Consensus 100 ~~~~~~~-~~-~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~Q~t~ikl~S 177 (602)
T KOG2291|consen 100 PPKKDGA-SE-RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKSQSTTIKLPS 177 (602)
T ss_pred CcccCCC-cc-ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccceeEEEEccc
Confidence 7666553 33 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccCCceeeCCeEEeccCccCCCCCccCEEEEEeeccceeEEEEEEEEEEEeeeeeeEEEEEEEEEEcCCCCCC
Q 007137 181 SRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKG 260 (616)
Q Consensus 181 ~~iesyT~~~~~~~~~~~i~YGP~~~v~pfs~~pi~Vhyenn~Pf~~v~~L~R~IEVSHWGNIavEE~y~L~N~GAkLkG 260 (616)
++|++||+.++.+++|+.++||||+|+|+|+++|+.||||||.||+++++|+|+|||||||||+|||+|+|+|+||+|||
T Consensus 178 s~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg 257 (602)
T KOG2291|consen 178 SKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKG 257 (602)
T ss_pred ccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhccCCCcCcccceeEeeecCCCCccCeeEEeccCeeeeeeeecCCCeeEEEeccCCcccCCcceeEEEeecCCc
Q 007137 261 EFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPL 340 (616)
Q Consensus 261 ~FSR~dyq~~~~~~~~~a~~~l~~~LP~~A~dvYYrD~IGNISTS~~r~~~~~~~LeL~PRFPLfGGWk~~FtiGYn~Pl 340 (616)
+|||+|||+++..++.++++++.+.||++|+|+||||+||||||||+|.++++++|+|+|||||||||||+|+||||+|+
T Consensus 258 ~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~~eleirPRfPlFGGWkt~ftiGy~lP~ 337 (602)
T KOG2291|consen 258 PFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDKTELEIRPRFPLFGGWKTNFTIGYNLPL 337 (602)
T ss_pred CcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCccceEEeccCCccccCceeeEEEecCCcH
Confidence 99999999987778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEeecCCeEEEEEec-cCCCCceEEEEEEEEEEcCCCCccceecCCCcee-eeceeEEEeecCCCCcEEEEEeccCCc
Q 007137 341 KDFLFELEGNRFLNITF-GSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVP 418 (616)
Q Consensus 341 ~~~L~~~~~~y~L~vpf-~~~~~d~~~d~~~vkIiLPEGA~~I~v~~P~~v~-~~~~~~~tYLDt~GRpvVvl~~~Nlv~ 418 (616)
++||++.|++|.|+++| +|+++|++||+++++|+|||||+||++.+||+++ .++++++|||||.||||++++|+|+|+
T Consensus 338 ~eyl~~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~syLDt~GR~Vvv~ek~Nvv~ 417 (602)
T KOG2291|consen 338 EEYLFSKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKYSYLDTNGRPVVVLEKNNVVP 417 (602)
T ss_pred HHHhhccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhhhhhhccCcEEEEEEccccCC
Confidence 99999999999999999 5778999999999999999999999999999999 679999999999999999999999999
Q ss_pred CCceeEEEEEEeCchhhhhhhHHHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHH
Q 007137 419 EHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHD 498 (616)
Q Consensus 419 eh~~~~~V~Y~~~~~~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 498 (616)
.|+++|+|+|+|++..||+|||+|+++||++|+++++|.|+||+|++|++. .|+| |++++.+|++..+++|...|+
T Consensus 418 ~h~~~i~v~Y~f~~~sml~ePL~i~a~ffilf~~~i~y~~~d~~is~~ps~-~a~~---r~~~~~~~~~~~v~~~~~~y~ 493 (602)
T KOG2291|consen 418 DHNQDIVVHYTFSKSSMLQEPLLIIAAFFILFFAVIVYVRLDFNISSDPSM-SATR---RVFQILLQLALEVNKCDVMYC 493 (602)
T ss_pred CCCccEEEEEEechhHhhhccHHHHHHHHHHHHHHheeeecceeeccChhh-hHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999666 5998 799999999999999999999
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecc
Q 007137 499 KLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDC 578 (616)
Q Consensus 499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (616)
+|++++++||+++|+++|++|||..+.++|+++++++++++.||+++ ++.+++|++|+.+.+| ++.+.+..+-..|..
T Consensus 494 ~l~~~~~~~~~t~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~l~t~~-~~~~~~~~~~l~~~~k-~~~~~~~~~~~~v~g 571 (602)
T KOG2291|consen 494 SLSEGRFRYKNTENIPTLGGAKKSSPLEKKDLASELVPLPSPLKTSD-STCVANKLPELSCSVK-LVPKTSVMQKHGVEG 571 (602)
T ss_pred HHHHHHhhccccCCCccccchhhcChhhhhhhhcccCCCcccCCCCC-cchhhhhhhhhhhhhc-cchhHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999997 7999999999999999 777777888888877
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 579 YEKKTGIRDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 579 ~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
++|+-+|.+ |+. +..|.++++.++++++|+|
T Consensus 572 ~~~k~sg~~-e~~---~~~~~~~~~~~~~~i~~~~ 602 (602)
T KOG2291|consen 572 NGKKGSGME-EGM---IANKTQYHQRGVDPILDYL 602 (602)
T ss_pred ccccccccc-hhh---hhcchHHHHhccchhhhcC
Confidence 788877777 555 5566677778888888765
No 2
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=8.8e-127 Score=1038.08 Aligned_cols=425 Identities=45% Similarity=0.763 Sum_probs=400.7
Q ss_pred ceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCC
Q 007137 28 DLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGM 107 (616)
Q Consensus 28 ~~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~ 107 (616)
.|+|+++.|+|||++++|||+++++++|+|++|+++|+|++|.++++++|+++|..++++.+... ..+..+.. .
T Consensus 1 ~~~n~~~~R~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~-----~~~~~~~~-~ 74 (432)
T PF04597_consen 1 VWENTNVERTIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKV-----SKEITEVN-S 74 (432)
T ss_pred CeEEeeEEEEEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCcccccc-----cccccccc-C
Confidence 48999999999999999999999999999999999999999999999999999998765443321 11112221 1
Q ss_pred CCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEecCCCcceee
Q 007137 108 PAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYT 187 (616)
Q Consensus 108 ~~~~~~y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SPY~T~~q~t~v~l~s~~iesyT 187 (616)
..+..+|+|+||.||+||++++|.|+|++++++.|+|++|+|+|+|+|+|++|+|++|||+|++|+|+|++|++++++||
T Consensus 75 ~~~~~~~~i~L~~pl~~~~~~~l~v~~~~~~~~~P~P~~I~q~e~Q~v~~~~~~~~~SpY~t~~q~t~i~~~~~~i~s~t 154 (432)
T PF04597_consen 75 GSEIKYYEITLPKPLAPGEKVTLTVEYVLTHALKPYPAEITQGEKQLVLFTGNAYPLSPYPTKKQKTKIKLPSSKIESYT 154 (432)
T ss_pred CCCcceEEEECCCCCCCCCEEEEEEEEEecccceEcCCcccCCCceEEEEEcCEEecCCccccEEEEEEEecCCceeccc
Confidence 23457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC---CceeeCCeEEeccCccCCCCCccCEEEEEeeccceeEEEEEEEEEEEeeeeeeEEEEEEEEEEcCCCCCCCcch
Q 007137 188 KLE---NTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSR 264 (616)
Q Consensus 188 ~~~---~~~~~~~~i~YGP~~~v~pfs~~pi~Vhyenn~Pf~~v~~L~R~IEVSHWGNIavEE~y~L~N~GAkLkG~FSR 264 (616)
+.. +.+++|++|+||||+|++||+..|+.||||||.||++|++|+|+|||||||||+|||+|+|+|+||+|||+|||
T Consensus 155 ~~~~~~~~~~~~~~i~yGP~~~v~p~~~~~~~vhye~n~P~~~v~~l~R~IeVSHWgni~veE~y~l~N~GA~Lkg~FSR 234 (432)
T PF04597_consen 155 KVEFEKPPKKKGNTITYGPYENVPPFSSQPLSVHYENNAPFLTVTSLERDIEVSHWGNIAVEEYYELRNDGAKLKGGFSR 234 (432)
T ss_pred CccccCCceecCCeEEeccccccCCCCcccEEEEEECCCCceEEEEEEEEEEEcCCccEEEEEEEEEEEcCcccCCCcCH
Confidence 998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCc-CcccceeEeeecCCCCccCeeEEeccCeeeeeeeecCCCeeEEEeccCCcccCCcceeEEEeecCCcccc
Q 007137 265 LDYQARPTI-RGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDF 343 (616)
Q Consensus 265 ~dyq~~~~~-~~~~a~~~l~~~LP~~A~dvYYrD~IGNISTS~~r~~~~~~~LeL~PRFPLfGGWk~~FtiGYn~Pl~~~ 343 (616)
+|||++++. ++++++++|+++||++|+|+||||+|||||||++|.+.++++|+|+|||||||||||+|++|||+|+++|
T Consensus 235 ~d~~~~~~~~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~~~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~p~~~~ 314 (432)
T PF04597_consen 235 LDYQKSQNSNRGSSALKSLETILPASASDVYYRDEIGNISTSHVRPNKDSVELELKPRFPLFGGWKYNFTIGYNLPLSNF 314 (432)
T ss_pred HHHHhhccCCCcChhheEEeccCCCccCCeEEEcCCccEEEEEEEeCCCceEEEEEcCCcccCCcceeEEEEccCChHHh
Confidence 999998765 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCC-eEEEEEeccCCCCceEEEEEEEEEEcCCCCccceecCCCcee-eeceeEEEeecCCCCcEEEEEeccCCcCCc
Q 007137 344 LFELEG-NRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVPEHN 421 (616)
Q Consensus 344 L~~~~~-~y~L~vpf~~~~~d~~~d~~~vkIiLPEGA~~I~v~~P~~v~-~~~~~~~tYLDt~GRpvVvl~~~Nlv~eh~ 421 (616)
|+..++ +|+|+|||++++.|++||+++++|+|||||+||+|.+|++++ .+++.++||||+.|||+|+++++||+|+|+
T Consensus 315 l~~~~~~~y~L~vp~~~~~~d~~~d~~~l~i~LPEGA~~i~v~~P~~~~~~~~~~~~tyLDt~GR~vv~l~~~nlvd~~~ 394 (432)
T PF04597_consen 315 LRKSGDGRYVLKVPFLPGIKDIVYDNVELRIILPEGAKNIKVSSPFPVDSVSVSTHKTYLDTTGRPVVVLEKKNLVDEHN 394 (432)
T ss_pred EEECCCCcEEEEEECcCCcCceEEEEEEEEEECCCCceeeeEeCCccceeeeccceeeeeeccCceEEEEEeccCCHhHC
Confidence 995544 999999999999999999999999999999999999999987 789999999999999999999999999998
Q ss_pred -eeEEEEEEeCchhhhhhhHHHHHHHHHHHHHHHhhee
Q 007137 422 -QFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMH 458 (616)
Q Consensus 422 -~~~~V~Y~~~~~~~l~kPL~i~~~~f~lFl~~i~~~r 458 (616)
++|+|+|+|+..+||+|||+|++++|++|+++|+|+|
T Consensus 395 ~~~~~v~Y~~~~~~~~~kPl~i~~~~f~~fl~~~~l~r 432 (432)
T PF04597_consen 395 DQDFQVTYTYPSSAMLRKPLLIAGAFFILFLAFIVLRR 432 (432)
T ss_pred CeeEEEEEEcCHHHHHHHHHHHHHHHHHHHHheeEEeC
Confidence 9999999999999999999999999999999999987
No 3
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=98.86 E-value=2.6e-08 Score=88.60 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
|.++++.+.+++++|...|..|+++..+|.++|+..+|.+..+.+.+++++++++|..+.+.|+.+...+++++.|.+||
T Consensus 1 ~~~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ 80 (97)
T PF14966_consen 1 VRELLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQ 80 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999995445899999999999
Q ss_pred HHHHHHHHHH
Q 007137 559 AKEKDLQEKV 568 (616)
Q Consensus 559 ~~~~~~~~~~ 568 (616)
..||+--++-
T Consensus 81 ~~Ek~KL~lT 90 (97)
T PF14966_consen 81 EQEKEKLELT 90 (97)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 4
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=92.68 E-value=2 Score=39.32 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred eEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCC-ceEEEEEeCCccccceeEEEEeeCCCCCccc------cccc------
Q 007137 29 LILSKVDRRIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVK------SLSA------ 95 (616)
Q Consensus 29 ~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p-~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~------~~~~------ 95 (616)
+....+.=...+.+.+.+.+++-++.|..+.+ .-.|.|.||++- -++-+++.+++..-.+. ....
T Consensus 3 ~~l~s~~v~~~I~~~~a~t~v~q~f~N~~~~~~E~~y~fpLp~~A--~i~~f~~~i~g~~i~g~v~ek~~A~~~y~~a~~ 80 (118)
T PF08487_consen 3 VPLKSVHVKVTIIDRFARTTVTQTFENPSSEPLEAVYSFPLPEGA--AISGFSMWIGGRTIEGEVKEKEEAKQEYEEAVA 80 (118)
T ss_pred ceEEEEEEEEEEEccEEEEEEEEEEECCCCCcEEEEEEeECCCCe--EEEEEEEEECCEEEEEEEecHHHHHHHHHHHHH
Confidence 44555566677889999999999999988777 456778888763 34555555543211100 0000
Q ss_pred -ccceeeccCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEE
Q 007137 96 -SLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 96 -~L~v~~~~~~~~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v 135 (616)
.-....++. ...+...|.+.+ |+.||+++++.+.|.
T Consensus 81 ~g~~a~lle~--~~~~~~~F~~~v--ni~p~~~v~i~l~Y~ 117 (118)
T PF08487_consen 81 QGKSAALLEQ--SDPNVEVFTVSV--NIPPNEEVTIELTYV 117 (118)
T ss_pred cCCCchhhcc--cCCCCcEEEEEE--EeCCCCEEEEEEEEE
Confidence 000000111 112334699999 899999999999985
No 5
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=92.42 E-value=17 Score=40.27 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=99.0
Q ss_pred EEEEEEEEEEEeeeeeeEEEEEEEEEEcCCCCCCCcchhhhccCCCcC-cccceeEeeecCCCCccCeeEEeccCeeeee
Q 007137 227 VGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIR-GASAFKYLIAKMPPRVHSVYYRDEIGNISTS 305 (616)
Q Consensus 227 ~v~~L~R~IEVSHWGNIavEE~y~L~N~GAkLkG~FSR~dyq~~~~~~-~~~a~~~l~~~LP~~A~dvYYrD~IGNISTS 305 (616)
.++++.=+++|..=|.+.|+|.+...=.|. -.|-|-.++-....... ....++.+...-.. .-|.-.|-
T Consensus 3 ~I~~~~v~~~v~~dG~~~V~E~ity~f~~~-~~giyr~i~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~~~~~ 72 (511)
T PF09972_consen 3 SIDSYDVDATVQEDGSLDVTETITYDFDGS-FHGIYRTIPLKGTGQLGDDKQSIKNFSVSDDG---------SSGKPGTY 72 (511)
T ss_pred cceeeEEEEEECCCCcEEEEEEEEEEeccC-CceEEEEeccCCCCCCCcccccceeEEEEeCC---------CcCCCcce
Confidence 367788888888889999999999886665 22222222222110000 00112222211111 12233333
Q ss_pred eeecCCCeeEEEeccCCcccCCcceeEEEeecCCccccEeecCCeEEEEEeccCCCCceEEEEEEEEEEcCCCCccceec
Q 007137 306 NLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVS 385 (616)
Q Consensus 306 ~~r~~~~~~~LeL~PRFPLfGGWk~~FtiGYn~Pl~~~L~~~~~~y~L~vpf~~~~~d~~~d~~~vkIiLPEGA~~I~v~ 385 (616)
.+....+..++.+.-=.|--.|=...|++-|++.-. +..-++.--|.-.|...--+.-+++++++|.||++...+++.
T Consensus 73 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~Y~v~~~--v~~~~D~~el~w~~~g~~~~~~i~~v~v~i~~P~~~~~~~~~ 150 (511)
T PF09972_consen 73 GIEETDDGYEIRIGIYDPSKNGGTHTYTISYTVKNA--VTNYSDVAELYWNFIGSGWDVPIENVTVTITLPKPVDNSKAW 150 (511)
T ss_pred EEEecCCcceEEEEecCccccCCeEEEEEEEEEECc--eEEcCCeeEEEEEEecCCCCCccceEEEEEECCCCCcceEEE
Confidence 333344445666666666665456678888887643 432233333566665444578999999999999877765543
Q ss_pred CC---CceeeeceeEEEeecCCCCcEEEEEeccCCcCCceeEEEEEEeCc
Q 007137 386 AP---FPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSK 432 (616)
Q Consensus 386 ~P---~~v~~~~~~~~tYLDt~GRpvVvl~~~Nlv~eh~~~~~V~Y~~~~ 432 (616)
.= +..... ++ .....|+++..|+- -++.+.|...||.
T Consensus 151 ~~~g~~~~~~~-------~~-~~~~~v~~~~~~l~--~~~~~~v~~~fP~ 190 (511)
T PF09972_consen 151 GHPGPYGGTVE-------ID-DDDGTVTFTTDNLP--PNEGVEVRVSFPK 190 (511)
T ss_pred EeccCCCccce-------ee-ecCCEEEEEEeccC--CCCeEEEEEEccc
Confidence 21 111111 11 23455667777742 3344555555565
No 6
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=88.96 E-value=8.4 Score=36.22 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=61.9
Q ss_pred CCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCC------CCcccccc-----
Q 007137 26 LSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEG------KGKVKSLS----- 94 (616)
Q Consensus 26 ~~~~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~------k~k~~~~~----- 94 (616)
...+....+.=...+.+.+++++.+.+..|.++.+..-||+...++ ..-++.+...+++. ++|.+..+
T Consensus 12 ~~~~pL~s~~v~~~I~~~~a~t~vtq~f~N~~~~~~e~~~~~~lp~-~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~Ye~A 90 (130)
T smart00609 12 VNGVPLYSLKVNSKVTSRFAHTVVTSRVVNRAVPAQEVTFDVELPK-TAFISNFAMTIDGKTYVGEIKEKEVAQKQYEKA 90 (130)
T ss_pred CCccceEEEEEEEEEECCEEEEEEEEEEECCCCCceEEEEEcCCCC-CcEEEeEEEEECCEEEEEEEeeHHHHHHHHHHH
Confidence 4577777778888899999999999999999866666555543332 23344444333221 11100000
Q ss_pred --cccceeeccCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEE
Q 007137 95 --ASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 95 --~~L~v~~~~~~~~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v 135 (616)
..-...-++.. ..+...|.+.+ ++.||+++++.+.|.
T Consensus 91 ~~~G~~a~L~eq~--~~~~~~F~~~V--NIppg~~v~v~l~Y~ 129 (130)
T smart00609 91 VSQGKTAGLVRAS--GRSMEQFTVSV--NVAPGSKVTFELTYE 129 (130)
T ss_pred HHcCCCeEEEEec--CCccCcEEEEE--EeCCCCEEEEEEEEE
Confidence 00000001111 12124689999 899999999999885
No 7
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.65 E-value=5.3 Score=44.64 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=63.1
Q ss_pred HHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceec
Q 007137 499 KLEASLRDLSR-TGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVD 577 (616)
Q Consensus 499 ~~~~~~~~~~~-~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~ 577 (616)
.|+..+...++ ..|.+...+++|.++.....++.+++.++.+|+.+ .|+.++-..-++....+.
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~----------~E~n~~l~knq~vw~~kl----- 419 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE----------REENKKLIKNQDVWRGKL----- 419 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHH-----
Confidence 45566666666 56777889999999999999999999999999876 133333222222211111
Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 578 CYEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 578 ~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
+++ .-++ ...+.+...|+++|.+.+.+||-.||
T Consensus 420 --~~~-~e~~-~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 420 --KEL-EERE-KEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred --HHH-HHHH-HHHHHHHHHHHHHHHHHHHhHheehh
Confidence 111 1111 22236778899999999999998776
No 8
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=88.59 E-value=14 Score=33.99 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 497 HDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
.......+..+--+.|.+..+...+.++...+...+.+..+.. .+.+.+-.+.++++.+.-+++++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~y~~~ 124 (181)
T PF12729_consen 58 LQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEK----LILSPEEKQLLEEFKEAWKAYRKL 124 (181)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666788887777777776666655555555543 322333445566666666655554
No 9
>PRK09039 hypothetical protein; Validated
Probab=87.66 E-value=8 Score=42.06 Aligned_cols=125 Identities=19% Similarity=0.281 Sum_probs=62.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCch
Q 007137 434 SMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDV 513 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~ 513 (616)
..+---||++.++..+|+.+=++-+=-++= - ..+++++ ++.+.++-.++.-+..--..+++.+..+...-+
T Consensus 21 d~~~~ll~~~~f~l~~f~~~q~fLs~~i~~--~-~~eL~~L-----~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~- 91 (343)
T PRK09039 21 DALSTLLLVIMFLLTVFVVAQFFLSREISG--K-DSALDRL-----NSQIAELADLLSLERQGNQDLQDSVANLRASLS- 91 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--H-HHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 455566778877777787665543322221 1 1223333 333444444444444445566666666665444
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCc-cccchhHhHHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLK-------ELSKELKLVLSFLQSSS-AASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k-------~~~~~~~~~~~~l~~~~-~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
+.++-|..+++.+. ++...+..+..+|..+. .+++..++|.-|+.-=..+++.+
T Consensus 92 -~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 92 -AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred -HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44445555555544 33444445555554431 13444444544444444455543
No 10
>PRK11637 AmiB activator; Provisional
Probab=86.77 E-value=21 Score=39.71 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q 007137 434 SMLREPFMLIFGFFSLFVAGIV 455 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl~~i~ 455 (616)
.+-..|++.++.+.++++++.+
T Consensus 17 ~~~~~~~~~~~ll~~~~~~~~~ 38 (428)
T PRK11637 17 RFAIRPILYASVLSAGVLLCAF 38 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHhhh
Confidence 4455687777664444444433
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.95 E-value=6.6 Score=40.30 Aligned_cols=122 Identities=22% Similarity=0.302 Sum_probs=74.1
Q ss_pred hHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cccchhHhHHHHHHHHHHHHHHHHh
Q 007137 493 CLTTHDKLEASLRDLSRT-GDVQACKAARKAADGLLKELSKELKLVLSFLQSSS-AASQILPKVEELVAKEKDLQEKVMA 570 (616)
Q Consensus 493 r~~~~~~~~~~~~~~~~~-~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~-~~~~~~~k~~e~~~~~~~~~~~~~~ 570 (616)
.-..-..++++-+++... +|......--..+++..++|..+|..+-+.|++-. ....++.+...+...=+.|.+++ .
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l-k 186 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL-K 186 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-H
Confidence 333444444544444332 23333333334455666666666666666665421 11235666666666666666765 6
Q ss_pred cccceeccccccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 571 KHSTVVDCYEKKTGIR-----DSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 571 ~~~~~~~~~e~~~~~~-----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
..-..++.+|+.+..- .++.+|...+.|...+..++|+.+.-|.+
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6667777778876643 47888888889999999999998877654
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.88 E-value=16 Score=35.74 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007137 522 AADGLLKELSKELKLVL 538 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~ 538 (616)
.++..++++.+++.+++
T Consensus 134 ~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 13
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=82.25 E-value=29 Score=34.76 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
.....|..+|.++++-.+++..+..+|..- -..+..+...|.+.++.+.++
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~r--E~~L~~~~~~L~~~e~~l~~~ 111 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQR--EEQLDRRLEQLEKREEELEKK 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777777777777653 455566666666666665554
No 14
>PRK12704 phosphodiesterase; Provisional
Probab=81.05 E-value=63 Score=37.26 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007137 518 AARKAADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 518 ~~~k~~~~~~k~~~~~~~~~~~~l 541 (616)
.-|..++.++++..+++.....+|
T Consensus 68 ~~R~Ele~e~~~~e~~L~qrE~rL 91 (520)
T PRK12704 68 KLRNEFEKELRERRNELQKLEKRL 91 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 15
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.50 E-value=9.4 Score=40.19 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHH
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKI 599 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~ 599 (616)
..+-|++++++.++.+.++..|.+ +-.+|++++.+-.++++++ .+ ...+|+.+++++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~------L~~qi~~~~~k~~~~~~~i-~~----------------~~~eik~l~~eI 89 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIES------LDNQIEEIQSKIDELQKEI-DQ----------------SKAEIKKLQKEI 89 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HH----------------HHHHHHHHHHHH
Confidence 455677777888888888888876 6777888888888888876 11 245567777777
Q ss_pred HHHHHHHHHHHHhh
Q 007137 600 TALRQEVENLLELI 613 (616)
Q Consensus 600 ~~~~~~~~~~~~~~ 613 (616)
.++++.|.+-=+.|
T Consensus 90 ~~~~~~I~~r~~~l 103 (265)
T COG3883 90 AELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776554444
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.37 E-value=20 Score=37.23 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch--hhhhhHHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR--DSENRVAAQQQKITAL 602 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~k~~~~ 602 (616)
-++++|+.++..+..+..+- ..++++-.+++.++.++..++. .++..+ |+.+++- .++.+++.+.++..++
T Consensus 89 ~e~~aL~~E~~~ak~r~~~l--e~el~~l~~~~~~l~~~i~~l~-~~~~~~----e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 89 RELRALNIEIQIAKERINSL--EDELAELMEEIEKLEKEIEDLK-ERLERL----EKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655555555442 3333333333333333333322 222221 3333322 4666666666666666
Q ss_pred HHHHHHHHHhhh
Q 007137 603 RQEVENLLELID 614 (616)
Q Consensus 603 ~~~~~~~~~~~~ 614 (616)
.++.+.|...|+
T Consensus 162 ~~~~~~L~~~l~ 173 (239)
T COG1579 162 SSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHhcC
Confidence 666666655554
No 17
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.84 E-value=79 Score=36.42 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 007137 520 RKAADGLLKELSKEL 534 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~ 534 (616)
|..++.++++..++|
T Consensus 64 R~Ele~el~~~e~rL 78 (514)
T TIGR03319 64 RAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444433333333
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.55 E-value=60 Score=35.06 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 512 DVQACKAARKAADGLLKELSKELKLV 537 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~ 537 (616)
+.+..+...-.+...|..|.+++..|
T Consensus 166 ~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 166 ELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 19
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=78.43 E-value=71 Score=31.38 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSR 509 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 509 (616)
+++..--+|...+.+|..+-.++.+.+..|..
T Consensus 31 ~v~~a~s~I~~~l~rR~dli~~Lv~~v~~y~~ 62 (186)
T PF04011_consen 31 AVQEAWSNIDVQLQRRHDLIPNLVEIVKSYAK 62 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788889999999999999999998876
No 20
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=76.01 E-value=53 Score=32.57 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=6.1
Q ss_pred HHHhheeeeeEEecCc
Q 007137 452 AGIVYMHVDMSISKSS 467 (616)
Q Consensus 452 ~~i~~~rlD~sI~k~~ 467 (616)
+..++..-|.+++..+
T Consensus 28 ~~~il~Qp~v~~s~i~ 43 (184)
T PF05791_consen 28 ANTILQQPDVNFSGIP 43 (184)
T ss_dssp HHHHHHS-----SS--
T ss_pred HHHHHcCCCCCCccCc
Confidence 5556677888887777
No 21
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.00 E-value=41 Score=38.42 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccc
Q 007137 522 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHST 574 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~ 574 (616)
.+..+..++..++..+.++|..+ -....+|...|++...++++.+ ...+.
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~--~~~~~ek~~~l~~~~~~L~~~F-~~LA~ 120 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAA--QQHADDKIRQMINSEQRLSEQF-ENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33344444555666666666665 5556888888888888888876 44444
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.35 E-value=40 Score=35.11 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccc--hhhhh
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGI--RDSEN 590 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~ 590 (616)
..+++..-..+..+..+|..+|.++...++.- ..++-+...++.+.++++-+.- ..+.+ +.|+.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l--~~~i~~l~~~~~~~e~~~~e~~------------~~~e~e~~~i~e 156 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKL--EKEIEDLKERLERLEKNLAEAE------------ARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 34455555666667777777777777776664 4555666666666666666542 11122 24556
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 007137 591 RVAAQQQKITALRQEVEN 608 (616)
Q Consensus 591 ~~~~~~~k~~~~~~~~~~ 608 (616)
+...+.+|+.+|+++++.
T Consensus 157 ~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 157 EGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 567778888888887764
No 23
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=72.84 E-value=86 Score=29.59 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTG--DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEE 556 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e 556 (616)
.....+.+..-+..+...++.+.+..+++.... +.......-..++..+..+.+.+......|+. ..+.+....+
T Consensus 38 ~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~---~~~~~~~~~~ 114 (213)
T cd00176 38 LLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEE---ALDLQQFFRD 114 (213)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444455566666677888888888888888876 67888888889999999999999999999987 3444555555
Q ss_pred HHH
Q 007137 557 LVA 559 (616)
Q Consensus 557 ~~~ 559 (616)
+..
T Consensus 115 ~~~ 117 (213)
T cd00176 115 ADD 117 (213)
T ss_pred HHH
Confidence 444
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=72.70 E-value=37 Score=38.59 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 588 SENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
++++|..++....++.+++..+.+-
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~ 387 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDE 387 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHH
Confidence 3444444444333333334333333
No 25
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=72.39 E-value=28 Score=40.40 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=57.7
Q ss_pred EEEcCCCeEEEEEEEEEEeCCCCCc-eEEEEEeCCccccceeEEEEeeCCCC------CcccccccccceeeccCCCC--
Q 007137 37 RIDLTSQIVRITSTLKVENEGSEPV-SEVLLAFPDLQVKDLALLKASPHEGK------GKVKSLSASLPVENVKPNGM-- 107 (616)
Q Consensus 37 tIDLs~~~Vk~t~~i~vkN~g~~p~-~~y~~~lp~~~~~~ls~i~a~~~~~k------~k~~~~~~~L~v~~~~~~~~-- 107 (616)
.+++++.+++++++.+..|..+.+. -.|.|.||+.. -++-+++.+++.. +|.+... ..+.....+.
T Consensus 6 ~~~V~g~~A~v~v~q~f~N~~~~~~E~~y~fPLp~~a--aV~~f~~~i~~r~i~g~v~eKe~A~~---~Ye~a~~~G~~a 80 (596)
T TIGR03788 6 NITVTGLIARTEVTQTFRNPSQFWVEGRYVFPLPENA--AVDSLTMHIGERVIVGQIMPKAAARA---IYEQAKAEGKKA 80 (596)
T ss_pred EEEEEcceEEEEEEEEEECCCCCcEEEEEEeeCCCCc--EEEEEEEEECCEEEEEEEeeHHHHHH---HHHHHHHhccce
Confidence 5678999999999999999998884 66778888764 4555555554311 1100000 0000000000
Q ss_pred ----CCcceEEEEEcCCCCCCCCeEEEEEEEE
Q 007137 108 ----PAALTFYAVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 108 ----~~~~~~y~V~Lp~pl~pg~~vtl~V~~v 135 (616)
......|++.+. ++.||++++|.+.|.
T Consensus 81 ~Lleq~~~~~F~~~V~-nIpp~~~v~i~l~Y~ 111 (596)
T TIGR03788 81 ALVEQQRPNLFTNKVA-NIGPGETVVVTIEYQ 111 (596)
T ss_pred eeeecccCCceeEEee-ccCCCCEEEEEEEEE
Confidence 011246888885 899999999999887
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.96 E-value=80 Score=37.18 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 498 DKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 498 ~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
.++.+..++.+++...+........++++.+++..++..+..
T Consensus 189 ~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~ 230 (650)
T TIGR03185 189 GDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQ 230 (650)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554444444444444444444444444433
No 27
>PRK00106 hypothetical protein; Provisional
Probab=70.88 E-value=1.1e+02 Score=35.45 Aligned_cols=11 Identities=45% Similarity=0.235 Sum_probs=5.0
Q ss_pred EEecCchHHHh
Q 007137 462 SISKSSAAYLA 472 (616)
Q Consensus 462 sI~k~~~~~~~ 472 (616)
||...+|.+.|
T Consensus 23 ~~~~~~~~~~~ 33 (535)
T PRK00106 23 SIKMKSAKEAA 33 (535)
T ss_pred HHHHhhhHHHH
Confidence 44444554433
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.14 E-value=64 Score=34.74 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007137 518 AARKAADGLLKELSKELKLV 537 (616)
Q Consensus 518 ~~~k~~~~~~k~~~~~~~~~ 537 (616)
...-.+...+.++..++..+
T Consensus 177 ~~~~~l~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 29
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=69.83 E-value=68 Score=35.34 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=6.8
Q ss_pred CCCcchhhhc
Q 007137 259 KGEFSRLDYQ 268 (616)
Q Consensus 259 kG~FSR~dyq 268 (616)
-.++||+=|-
T Consensus 23 ~kpl~r~yFa 32 (359)
T PF10498_consen 23 MKPLSRHYFA 32 (359)
T ss_pred CCCCCHHHhc
Confidence 3677777666
No 30
>PRK09793 methyl-accepting protein IV; Provisional
Probab=68.89 E-value=1.1e+02 Score=34.92 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 007137 595 QQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 595 ~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
..+.+.+-.++|.+|++.|++|
T Consensus 346 ~~~~l~~~s~~I~~i~~~I~~I 367 (533)
T PRK09793 346 TMQEIATSSQKIGDIISVIDGI 367 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666654
No 31
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=68.73 E-value=35 Score=33.56 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQA-CKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~-~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
...|..+-.++.+ .|=.+-.-...|-.+||-+. +..-+.-+++.++.+.+-.++.-.--+. ..+..+.++|++
T Consensus 44 i~h~NNlN~i~~r---~~l~~~kl~sylGleKD~Se~~S~~K~Pf~~~~k~~~~ifkegg~d~~k---~~~~l~~L~e~s 117 (163)
T PF03233_consen 44 INHCNNLNEIVGR---NWLKLSKLLSYLGLEKDPSEGLSKSKSPFESFFKDLSKIFKEGGGDKQK---QLKLLPTLEEIS 117 (163)
T ss_pred HHHHhhHHHHHHH---HHHHHHHHHHHhccccCCccccccCCCcHHHHHHHHHHHHHhcCCchhh---HHHHHHHHHHHH
Confidence 3444444444433 33444455555666777665 4444555666666655555443111111 223455666666
Q ss_pred HHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007137 559 AKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
.+.+++.+.. +... ++.+.-+.++.+|+.+...+.++++++-.|+
T Consensus 118 nki~kLe~~~-k~L~------d~Iv~~~~i~e~IKd~de~L~~I~d~iK~Ii 162 (163)
T PF03233_consen 118 NKIRKLETEV-KKLK------DNIVTEKLIEELIKDFDERLKEIRDKIKKII 162 (163)
T ss_pred HHHHHHHHHH-HhHh------hhccccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6555555543 2222 4455666788888888888888888877664
No 32
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=67.37 E-value=1.7e+02 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSSS 545 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~ 545 (616)
...+.....++.++++.+.+.+++......+..|-
T Consensus 135 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~ 169 (301)
T PF14362_consen 135 AQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEI 169 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555556666666666666666666555553
No 33
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.92 E-value=1.2e+02 Score=34.08 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=9.5
Q ss_pred ceeEEEEEEeCchhh
Q 007137 421 NQFFQVYYKFSKLSM 435 (616)
Q Consensus 421 ~~~~~V~Y~~~~~~~ 435 (616)
..-|.|+|+-+.-..
T Consensus 121 s~vi~Is~~~~dP~~ 135 (498)
T TIGR03007 121 DNLFTISYEDKDPEL 135 (498)
T ss_pred CCeEEEEeeCCCHHH
Confidence 346777777665543
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.86 E-value=62 Score=30.57 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 007137 588 SENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
|..+++..++...-|..||++|
T Consensus 101 i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 101 IGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666665544
No 35
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.75 E-value=71 Score=31.93 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
+...+..++..+-.+.. .+.+.+...+..+... ..|..+-+++++|.++++.|++.|+.- ...=-+++.++
T Consensus 70 ~~~~l~~~~~~~~~~i~----~l~~~i~~~~~~r~~~---~eR~~~l~~l~~l~~~~~~l~~el~~~--~~~Dp~~i~~~ 140 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIE----ELEEKIEEAKKGREES---EEREELLEELEELKKELKELKKELEKY--SENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHH
Confidence 34444555555444444 5666666666666555 788889999999999999999999843 22122455555
Q ss_pred HHHHHHHHHH
Q 007137 558 VAKEKDLQEK 567 (616)
Q Consensus 558 ~~~~~~~~~~ 567 (616)
.+--+..++.
T Consensus 141 ~~~~~~~~~~ 150 (188)
T PF03962_consen 141 KEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHH
Confidence 5544445544
No 36
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=66.29 E-value=1.1e+02 Score=29.69 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
+++.-++++..+-..-...-.+.++.+.+-+ -.=..-...|++..++...+...+...-..+++.. ...+--.|.
T Consensus 41 ~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar-~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~----a~~~I~~e~ 115 (161)
T COG0711 41 KIADDLAEAERLKEEAQALLAEYEQELEEAR-EQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA----AEAEIEAEK 115 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4555555555554444444455555555544 22233345566666666655555555555555432 122223344
Q ss_pred HHHHHHHHHHH
Q 007137 558 VAKEKDLQEKV 568 (616)
Q Consensus 558 ~~~~~~~~~~~ 568 (616)
.+.-.+++..+
T Consensus 116 ~~a~~~l~~~~ 126 (161)
T COG0711 116 ERALEELRAEV 126 (161)
T ss_pred HHHHHHHHHHH
Confidence 44445555554
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.13 E-value=1.2e+02 Score=34.42 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
+++.++.-...+..+.+.+..++..+..+|..
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555443
No 38
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.80 E-value=1.2e+02 Score=36.30 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=13.5
Q ss_pred ceeEEEEEEeCchhhhhhhHHHHH
Q 007137 421 NQFFQVYYKFSKLSMLREPFMLIF 444 (616)
Q Consensus 421 ~~~~~V~Y~~~~~~~l~kPL~i~~ 444 (616)
..-|.|+|+-+.-.+-.+-+-.++
T Consensus 154 s~ii~Is~~~~dP~~Aa~iaN~la 177 (754)
T TIGR01005 154 TRIIAIEFRSEDPKLAAAIPDAIA 177 (754)
T ss_pred cEEEEEEEecCCHHHHHHHHHHHH
Confidence 355677777776555444333333
No 39
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=65.49 E-value=1.3e+02 Score=34.20 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 007137 597 QKITALRQEVENLLELIDEI 616 (616)
Q Consensus 597 ~k~~~~~~~~~~~~~~~~~~ 616 (616)
+.+.+-.++|.++++.|++|
T Consensus 350 ~~l~~~~~~I~~i~~~I~~I 369 (553)
T PRK15048 350 HEIADSSKKIADIISVIDGI 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666654
No 40
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=64.95 E-value=69 Score=37.19 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
.|+-|+.++.=++.-+ +-|++--+++..+-++ +-|-++|+++|..=++|..|-.++|+=-.++||-|| .-|+
T Consensus 6 Lq~eIdr~lkKv~Egv---e~Fd~i~ek~~~~~n~----sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK-~~L~ 77 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGV---EIFDEIYEKLHSANNV----SQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDK-DSLL 77 (575)
T ss_pred HHHHHHHHHHHhhhhH---HHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccH-HHHH
Confidence 3444444444333333 4444445555555544 348899999999888999999999987778999999 3343
Q ss_pred H
Q 007137 559 A 559 (616)
Q Consensus 559 ~ 559 (616)
.
T Consensus 78 d 78 (575)
T KOG2150|consen 78 D 78 (575)
T ss_pred H
Confidence 3
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.92 E-value=1.7e+02 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
++.+-.++.++.++-..++.+.++. .+++...++--|.++.+.+++++.|.+.+..|+.
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~------~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDEL------QKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443332 3456667777778888888888888777766653
No 42
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=64.89 E-value=1e+02 Score=31.24 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=11.9
Q ss_pred HHHHHHHHhcccceeccccccccchhhhhh
Q 007137 562 KDLQEKVMAKHSTVVDCYEKKTGIRDSENR 591 (616)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 591 (616)
.+++.....-...+ ++|++ |+.++.+
T Consensus 167 ~el~~~a~e~A~~I---~~Kll-g~~~dk~ 192 (204)
T PRK09174 167 ADVGSIAEETAAAI---VEQLI-GGTADKA 192 (204)
T ss_pred HHHHHHHHHHHHHH---HHHHh-CcccCHH
Confidence 44555442222333 47776 4445443
No 43
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.74 E-value=21 Score=36.87 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHH
Q 007137 498 DKLEASLRDLSRTGDVQACKAAR-------KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQ 565 (616)
Q Consensus 498 ~~~~~~~~~~~~~~d~~~~~~~~-------k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~ 565 (616)
++|++.++.++..|.+..-+... -.+++++|++..+...|++-|+. +++++|+.+.++++-
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k-------a~~~~d~l~ie~~L~ 172 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEK-------AKTVEDLLEIERELS 172 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHH
Confidence 45555555555555443333222 23344444444444444444442 124455555444443
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.70 E-value=71 Score=37.58 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.+++.+....+.++.++.++..++..++.+++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666654
No 45
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.57 E-value=1.2e+02 Score=32.68 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHHhccCchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 494 LTTHDKLEASLRDLSRTGDVQACKAA-------RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~d~~~~~~~-------~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
..-.+.-+.++.+|++...+-..... -..+++++.++..+++.+.+....+ ++++-.--.++..+++++.+
T Consensus 183 ~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~--~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 183 EQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQ--NPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHHHH
Confidence 33345677888888875543333332 3344444444444444444333332 34444333444445555444
Q ss_pred H
Q 007137 567 K 567 (616)
Q Consensus 567 ~ 567 (616)
.
T Consensus 261 e 261 (362)
T TIGR01010 261 Q 261 (362)
T ss_pred H
Confidence 3
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.39 E-value=53 Score=36.87 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.++.-++++.+-+..-..-.++|++.+.+++ .+++......+....+++++++.|.++-..|+.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e--~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLE--TEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4555555555555444444555666555543 355555555555555555555555555555544
No 47
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=63.98 E-value=1.1e+02 Score=32.16 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++.++..+..++.++.+++.....++
T Consensus 188 ~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 188 RAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444555555444444443
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.18 E-value=65 Score=38.55 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
.+..|....+-+.||+.||..+|+-+
T Consensus 634 ~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 634 AQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455667888899999998754
No 49
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.16 E-value=1.6e+02 Score=34.26 Aligned_cols=47 Identities=26% Similarity=0.271 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
+|++-|++.-..... -++.+...+++|++| +.+|-+|+.++.++..+
T Consensus 273 ~D~nK~~~y~~~~~~----k~~~~~~~l~~l~~E-----ie~kEeE~e~lq~~~d~ 319 (581)
T KOG0995|consen 273 DDVNKFQAYVSQMKS----KKQHMEKKLEMLKSE-----IEEKEEEIEKLQKENDE 319 (581)
T ss_pred hHHHHHHHHHHHHHh----hhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 455555554444433 334444555556655 66777776666655554
No 50
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.02 E-value=20 Score=40.73 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccc
Q 007137 526 LLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEK 581 (616)
Q Consensus 526 ~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~ 581 (616)
.+|.+.+++++|+ +. ..+.+.|+.|...+..+|.+++ .+-+..+.|.+|
T Consensus 356 ri~~i~e~v~eLq-k~-----~ad~~~KI~~~k~r~~~Ls~Ri-LRv~ikqeilr~ 404 (508)
T KOG3091|consen 356 RINAIGERVTELQ-KH-----HADAVAKIEEAKNRHVELSHRI-LRVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHHH-hh-----hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 3444666666666 33 4568999999999999999996 666655544444
No 51
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=62.00 E-value=1e+02 Score=32.16 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
+...++.+......=...-+.+++.+.+.+... ..-...|++..+.+..++-.+-..=..+++... -.+--.|-+
T Consensus 41 I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea-~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a----~~~ie~Ek~ 115 (250)
T PRK14474 41 IANRWQDAEQRQQEAGQEAERYRQKQQSLEQQR-ASFMAQAQEAADEQRQHLLNEAREDVATARDEW----LEQLEREKQ 115 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 333344433333333333334444444433222 233445555555554444444333333333321 111223444
Q ss_pred HHHHHHHHHHHhcccceecccccccc
Q 007137 559 AKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
+..+++++.+....... ++|+++
T Consensus 116 ~a~~~L~~~v~~la~~~---A~kiL~ 138 (250)
T PRK14474 116 EFFKALQQQTGQQMVKI---IRAALA 138 (250)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44555555542222222 466554
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.44 E-value=1e+02 Score=38.25 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
..++|+..+++-.+.++-+|++++.-.
T Consensus 910 kle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 910 KLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 578888888888899999999987644
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.39 E-value=1.2e+02 Score=32.68 Aligned_cols=11 Identities=0% Similarity=0.141 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 007137 479 VQAAIQQVENV 489 (616)
Q Consensus 479 ~~~~~~~~~~~ 489 (616)
.+++.+.+...
T Consensus 142 legLk~~L~~~ 152 (312)
T smart00787 142 LEGLKEGLDEN 152 (312)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.19 E-value=72 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHhcc
Q 007137 481 AAIQQVENVINRCLTTHDKLEASLRDLSRT 510 (616)
Q Consensus 481 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 510 (616)
.+++.+++-+.+|-+-...+-+.+..+.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555544333
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.02 E-value=1.1e+02 Score=38.14 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=17.4
Q ss_pred eccCeeeeeeeecC--CCeeEEEeccCCcccCCcceeEEEeec
Q 007137 297 DEIGNISTSNLWGD--SKKTELLIEPRYPLFGGWRTAFTIGYG 337 (616)
Q Consensus 297 D~IGNISTS~~r~~--~~~~~LeL~PRFPLfGGWk~~FtiGYn 337 (616)
+..|-|=+-|+..= .++..++ ||-|-+ |.+|=|
T Consensus 37 ~~sG~I~sI~L~NFMCHsnL~Ie-------Fg~~vN-fI~G~N 71 (1074)
T KOG0250|consen 37 AESGKIESIHLTNFMCHSNLLIE-------FGPRVN-FIVGNN 71 (1074)
T ss_pred hhcceEEEEEEeeecccccceec-------cCCCce-EeecCC
Confidence 33477777666542 2333444 444544 666644
No 56
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.87 E-value=84 Score=32.63 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
+..+..+++|++++.+.-..+-+.|.
T Consensus 219 ~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 219 QKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666655555554443
No 57
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=59.85 E-value=80 Score=32.14 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHH-hHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 479 VQAAIQQVENVINR-CLTTHDKLEASLRDLSRT-GDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 479 ~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~-~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
+..+.+++..+.++ =..-.-.|.+.|++|-+. +-+...=..|.++-..+.++.+++....+
T Consensus 75 la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~ 137 (224)
T cd07623 75 LAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKRE 137 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 222334455555555431 11111222344444444444554444443
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.42 E-value=80 Score=41.05 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQ-ACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~-~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.++..+--+..++.+|. |=.+++|.+.+..+-+.+ .++..-+.++++++.+.+++...+.++..
T Consensus 953 ~~~~~~~~l~~~~~~~~--~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q 1017 (1486)
T PRK04863 953 DAKQQAFALTEVVQRRA--HFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ 1017 (1486)
T ss_pred HHHHHHHHHHHHHHHHH--hccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555554 223788888776665544 34555555666555555555555555443
No 59
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.18 E-value=1.9e+02 Score=32.78 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 505 RDLSRTGDVQACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 505 ~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
.+++..+.-..+...||.+|+-+-+|.+.=++|.+.
T Consensus 293 ~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 293 PRLSELREGVENETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777788888988888777776666665544
No 60
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=58.91 E-value=2.9e+02 Score=30.56 Aligned_cols=128 Identities=12% Similarity=0.164 Sum_probs=80.3
Q ss_pred EEeEEEEEEEcCCC---eEEEEEEEEEEeCCCCCceEEEEEeCCccc-------cceeEEEEeeCCCCCcccccccccce
Q 007137 30 ILSKVDRRIDLTSQ---IVRITSTLKVENEGSEPVSEVLLAFPDLQV-------KDLALLKASPHEGKGKVKSLSASLPV 99 (616)
Q Consensus 30 ~n~~v~RtIDLs~~---~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~-------~~ls~i~a~~~~~k~k~~~~~~~L~v 99 (616)
.+++++=+++|... .|.|+.++++... -+..+..+|.... .++..+++..++..++ .....+
T Consensus 3 ~I~~~~v~~~v~~dG~~~V~E~ity~f~~~----~~giyr~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~ 74 (511)
T PF09972_consen 3 SIDSYDVDATVQEDGSLDVTETITYDFDGS----FHGIYRTIPLKGTGQLGDDKQSIKNFSVSDDGSSGK----PGTYGI 74 (511)
T ss_pred cceeeEEEEEECCCCcEEEEEEEEEEeccC----CceEEEEeccCCCCCCCcccccceeEEEEeCCCcCC----CcceEE
Confidence 34555556666444 4666666666542 5667788887766 5566666665431101 112222
Q ss_pred eeccCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeec-ceecCcceeeEEEEEEEe
Q 007137 100 ENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQES-AFYLTPYVVKVQSLSVKL 178 (616)
Q Consensus 100 ~~~~~~~~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~I~Q~e~Q~v~f~~n-~y~~SPY~T~~q~t~v~l 178 (616)
+. . .+..-+++....|...|++.+++++|.+.+....+ +|.+.+.|+-- ..+- .+.+.-+++|.+
T Consensus 75 ~~--~----~~~~~~~i~~~~~~~~~~~~~~~~~Y~v~~~v~~~------~D~~el~w~~~g~~~~--~~i~~v~v~i~~ 140 (511)
T PF09972_consen 75 EE--T----DDGYEIRIGIYDPSKNGGTHTYTISYTVKNAVTNY------SDVAELYWNFIGSGWD--VPIENVTVTITL 140 (511)
T ss_pred Ee--c----CCcceEEEEecCccccCCeEEEEEEEEEECceEEc------CCeeEEEEEEecCCCC--CccceEEEEEEC
Confidence 22 1 12234788889998888999999999999999998 55566777632 3333 345777888889
Q ss_pred c
Q 007137 179 P 179 (616)
Q Consensus 179 ~ 179 (616)
|
T Consensus 141 P 141 (511)
T PF09972_consen 141 P 141 (511)
T ss_pred C
Confidence 8
No 61
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=58.88 E-value=1.5e+02 Score=32.56 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch--hhhhh---HHHH
Q 007137 521 KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR--DSENR---VAAQ 595 (616)
Q Consensus 521 k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~---~~~~ 595 (616)
..+|+-..-+..+-..++.+|.+- .-+.-||-+|-|.+.+++.|.+ .-.....|-|..-..-+ .++.| |..+
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l--~~e~~Ekeeesq~LnrELaE~l-ayqq~L~~eyQatf~eq~~ml~kRQ~yI~~L 206 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDAL--QQECGEKEEESQTLNRELAEAL-AYQQELNDEYQATFVEQHSMLDKRQAYIGKL 206 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHHH
Confidence 345555555555555555555553 4557789999999999999876 33333332222222211 23333 3344
Q ss_pred HHHHHHHHHHHHHHHH
Q 007137 596 QQKITALRQEVENLLE 611 (616)
Q Consensus 596 ~~k~~~~~~~~~~~~~ 611 (616)
..|+++|-.||..||.
T Consensus 207 EsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 207 ESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666664
No 62
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.78 E-value=1.7e+02 Score=33.82 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 580 EKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 580 e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++.+..+-.++| .....+++++..+|+.|-.+++
T Consensus 362 ~~~i~~~v~~Er-~~~~~~l~~~~~~~~~le~~~~ 395 (582)
T PF09731_consen 362 EKEIKEKVEQER-NGRLAKLAELNSRLKALEEALD 395 (582)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455 7778888888888877766554
No 63
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=58.14 E-value=40 Score=33.45 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHH-----HHhHhhHHHHHHHHHHHhccCchHHH
Q 007137 442 LIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVI-----NRCLTTHDKLEASLRDLSRTGDVQAC 516 (616)
Q Consensus 442 i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~~~~~~d~~~~ 516 (616)
++++..+++-+.++|-|+-|+-...+-+- -| | -+.-..++++.++ +....+-++++....++.+. .
T Consensus 48 vIa~~~~~Yg~lYlYERLtWT~~AKER~f-K~-Q--fv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~-----V 118 (171)
T PF04799_consen 48 VIAVSGSLYGGLYLYERLTWTNKAKERAF-KR-Q--FVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQ-----V 118 (171)
T ss_dssp ------------------------------------------------------------------HHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHH-HH-H--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-----H
Confidence 45566678888899999999875444331 22 1 3444444443333 22224444454444444332 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007137 517 KAARKAADGLLKELSKELK 535 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~ 535 (616)
..+++.++.|.++++++|.
T Consensus 119 d~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 119 DQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2344445555555554443
No 64
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=57.84 E-value=1.3e+02 Score=27.14 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 007137 447 FSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGL 526 (616)
Q Consensus 447 f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~ 526 (616)
+++++..+++..+.=.+.+... .+++.++.+......-...-..+++.+.+-+...+ ...+.|++..+..
T Consensus 12 l~~~l~~~~~~pi~~~l~~R~~---------~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~-~i~~~a~~~a~~~ 81 (132)
T PF00430_consen 12 LFFLLNKFLYKPIKKFLDERKA---------KIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQ-EIIEEAKEEAEKE 81 (132)
T ss_dssp HHHHHHHHTHHHHHHHCS--S----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444455666666555543222 45555555555555555555555555555444333 2334444444444
Q ss_pred HHH
Q 007137 527 LKE 529 (616)
Q Consensus 527 ~k~ 529 (616)
..+
T Consensus 82 ~~~ 84 (132)
T PF00430_consen 82 KEE 84 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 65
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.67 E-value=61 Score=30.05 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=53.0
Q ss_pred HHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHH------HHHHHHHHHhc
Q 007137 499 KLEASLRDLSRTG-DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAK------EKDLQEKVMAK 571 (616)
Q Consensus 499 ~~~~~~~~~~~~~-d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~------~~~~~~~~~~~ 571 (616)
.+.+.+.+|.... +++.+...+..+++++++....+.+|- .|.. ++.+..-|.-+.-+ ..++.+++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~-~L~~---d~~VYk~VG~vlv~qd~~e~~~~l~~r~--- 80 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE-KLPD---DTPIYKIVGNLLVKVDKTKVEKELKERK--- 80 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC---cchhHHHhhHHHhhccHHHHHHHHHHHH---
Confidence 3444444444433 366677788889998888777766653 3443 56677766654322 11222221
Q ss_pred ccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 572 HSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 572 ~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
.+++.+|+.+.++.+.++.++..+=+.|.
T Consensus 81 --------------E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 81 --------------ELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14556666666666666666655544443
No 66
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=57.37 E-value=2e+02 Score=28.27 Aligned_cols=51 Identities=6% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCc-h--HHHHHHHHHHHHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGD-V--QACKAARKAADGLLK 528 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d-~--~~~~~~~k~~~~~~k 528 (616)
++...++.+.+..+.+..-++.+..+++.+..+.+ . .+..++|.=+..-|.
T Consensus 7 el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~ 60 (204)
T PF04740_consen 7 ELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHI 60 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHH
Confidence 57778888889999999999999999999999988 3 345555555544333
No 67
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=57.30 E-value=53 Score=30.81 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=5.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhheeeeeEE
Q 007137 434 SMLREPFMLIFGFFSLFVAGIVYMHVDMSI 463 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI 463 (616)
.+=.+-++++++|+++++.+..+.-..++-
T Consensus 6 sI~~~L~~~l~~~~~ll~~~~~~~~~~l~~ 35 (171)
T PF02203_consen 6 SIRTKLLLVLALFLLLLLVVGGLGFWGLRS 35 (171)
T ss_dssp -------------------HHCCCCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666555554443
No 68
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=56.88 E-value=2.1e+02 Score=32.78 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHH-HHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHH
Q 007137 438 EPFMLIFGFFSLFV-AGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQAC 516 (616)
Q Consensus 438 kPL~i~~~~f~lFl-~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~ 516 (616)
.-++|=..+|=-|. ++..|...| ..++|+| -.+ -.+..++++.+...-..+-...+.-.++++. +-..
T Consensus 225 ~e~~Vek~lfdY~~~~Y~~fl~~~---~~~~~~e-~El----k~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e---a~k~ 293 (622)
T COG5185 225 YELMVEKLLFDYFTESYKSFLKLE---DNYEPSE-QEL----KLGFEKFVHIINTDIANLKTQNDNLYEKIQE---AMKI 293 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CccCchH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34555555554443 444443333 2334443 111 2344444455544444433344444444332 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 517 KAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
..+++.++..+++++....-+++.
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~ 317 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENY 317 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567777777777777666655543
No 69
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.79 E-value=1.1e+02 Score=31.95 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
+.|+=++.+..-++.-+..|+.+-+-+.. ++-++-|-++++++|-.=++|..+-.++|+=-.++++-+|-. |
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~-------~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~-L 76 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVES-------ATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKK-L 76 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHH-H
Confidence 35666666666666666555555444433 334567899999999988888888888888766788888732 4
Q ss_pred HHHHH
Q 007137 558 VAKEK 562 (616)
Q Consensus 558 ~~~~~ 562 (616)
+..-+
T Consensus 77 ~e~Rk 81 (233)
T PF04065_consen 77 LENRK 81 (233)
T ss_pred HHHHH
Confidence 44333
No 70
>PRK11519 tyrosine kinase; Provisional
Probab=56.55 E-value=2.4e+02 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhccCchH
Q 007137 496 THDKLEASLRDLSRTGDVQ 514 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~~d~~ 514 (616)
-.+.-|+++++|++...+-
T Consensus 282 ~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 282 RLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3457788899998876553
No 71
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=56.22 E-value=90 Score=31.51 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=6.3
Q ss_pred chhhhhhHHHHH
Q 007137 585 IRDSENRVAAQQ 596 (616)
Q Consensus 585 ~~~~~~~~~~~~ 596 (616)
+.|++.-|..++
T Consensus 193 ~~~~e~~ie~~k 204 (216)
T cd07627 193 EIYLESAIESQK 204 (216)
T ss_pred HHHHHHHHHHHH
Confidence 336676644443
No 72
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.21 E-value=1.4e+02 Score=37.32 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=16.7
Q ss_pred hhhhccCCCcCcccc-eeEeeecCCCCccC
Q 007137 264 RLDYQARPTIRGASA-FKYLIAKMPPRVHS 292 (616)
Q Consensus 264 R~dyq~~~~~~~~~a-~~~l~~~LP~~A~d 292 (616)
|+.|--++..+|.+| ++.+.+-|-.+|.+
T Consensus 63 ~vNfI~G~NGSGKSAIltAl~lglG~rAs~ 92 (1074)
T KOG0250|consen 63 RVNFIVGNNGSGKSAILTALTLGLGGRASA 92 (1074)
T ss_pred CceEeecCCCCcHHHHHHHHHHhhcccccc
Confidence 344555555566444 56677777666644
No 73
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.00 E-value=1.5e+02 Score=29.52 Aligned_cols=9 Identities=33% Similarity=0.280 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 007137 518 AARKAADGL 526 (616)
Q Consensus 518 ~~~k~~~~~ 526 (616)
..||.++++
T Consensus 111 ~~rk~l~~e 119 (189)
T PF10211_consen 111 GMRKALQAE 119 (189)
T ss_pred HHHHHHHHH
Confidence 344444443
No 74
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=55.98 E-value=69 Score=36.19 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
-+..+.++++....|...+++=+--+-..++.-..+-|.+++.++-+.
T Consensus 251 v~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~ 298 (434)
T PRK15178 251 VKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEA 298 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444332333444444444444444443
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.80 E-value=2.1e+02 Score=34.49 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCCCC-----CeEEEEEEEEe
Q 007137 112 TFYAVKLPKALGKG-----DSYTFDVLAVF 136 (616)
Q Consensus 112 ~~y~V~Lp~pl~pg-----~~vtl~V~~v~ 136 (616)
....+.||....+. .+.++.+.++.
T Consensus 106 ~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~ 135 (717)
T PF10168_consen 106 GVVVLELPRRWGKNGEFEDGKKEINCRTVP 135 (717)
T ss_pred cEEEEEeccccCccccccCCCcceeEEEEE
Confidence 45788898865432 34567776663
No 76
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=55.71 E-value=22 Score=36.15 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHhccCchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHH
Q 007137 495 TTHDKLEASLRDLSRTGDVQACK----AARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVE 555 (616)
Q Consensus 495 ~~~~~~~~~~~~~~~~~d~~~~~----~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~ 555 (616)
.+|+.+-+++..+........|. ..+.....+..++.+++..|.++++.| .+.+.||+
T Consensus 148 ~lY~~l~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~i~~L~kei~~L~~~~~kE---kq~nrkve 209 (221)
T PF14335_consen 148 ALYESLVNQIIALNAAPNTGEFEKTSLWERIERLEQIEKLEKEIAKLKKKIKKE---KQFNRKVE 209 (221)
T ss_pred HHHHHHHHHHhcchhhhhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHH
Confidence 45555555555555444322322 455566677888999999999999997 44555553
No 77
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=55.52 E-value=89 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHhhHHHHHHH
Q 007137 483 IQQVENVINRCLTTHDKLEAS 503 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~~~~~~ 503 (616)
++-|..++++|..+|+.+..+
T Consensus 118 i~svK~~f~~R~k~~~~~~~a 138 (234)
T cd07664 118 IAAVKGVFDQRMKCWQKWQDA 138 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554444444
No 78
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.03 E-value=1.8e+02 Score=37.32 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----ccchhHhH-------HHHHHHHHHHHHHHHhcccceeccc
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSSSA----ASQILPKV-------EELVAKEKDLQEKVMAKHSTVVDCY 579 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~----~~~~~~k~-------~e~~~~~~~~~~~~~~~~~~~~~~~ 579 (616)
+.+..++..-+.++.++.++.+++..+.+.|..--. ...+...| .|+..+.+++.++- ....... .
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~-~~l~~~~-~- 820 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA-AKLQGSD-L- 820 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccc-c-
Confidence 355666666666666666666666555555543200 01123333 44444555555442 2222111 0
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 580 EKKTGIRDSENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 580 e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
+ .+...++.++...+.++.+++.+++++...
T Consensus 821 ~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e 851 (1311)
T TIGR00606 821 D--RTVQQVNQEKQEKQHELDTVVSKIELNRKL 851 (1311)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123467777777777777776666666543
No 79
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=54.34 E-value=1.7e+02 Score=27.53 Aligned_cols=49 Identities=31% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc---cccchhHhHHHHHHHHHHHHHHH
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSSS---AASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~~---~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.+....+++...+++..+..+|++.. ...+.-.+..|++++.++++...
T Consensus 45 ~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 45 FKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666541 12344556677777777777653
No 80
>PRK02224 chromosome segregation protein; Provisional
Probab=54.18 E-value=1.7e+02 Score=35.42 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 588 SENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
+++++..+++++.++..+++.|..-
T Consensus 277 l~~~i~~~~~~~~~le~e~~~l~~~ 301 (880)
T PRK02224 277 LAEEVRDLRERLEELEEERDDLLAE 301 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.79 E-value=2.3e+02 Score=36.57 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
+...++.....++.+...+.+++..+.+++..- +++++....+|+..+..++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l-~~~~a~~~~~eL~el~~ql~~~ 345 (1353)
T TIGR02680 291 ELETAREEERELDARTEALEREADALRTRLEAL-QGSPAYQDAEELERARADAEAL 345 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666654 4677777777777777776664
No 82
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=53.66 E-value=2.2e+02 Score=27.59 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccch
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR 586 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (616)
|-.+...+++..+ ...+. +.++|+++.+
T Consensus 118 e~~~a~~el~~e~-~~lAv--~~A~kil~~~ 145 (167)
T PRK14475 118 AEAQAAADVKAAA-VDLAA--QAAETVLAAR 145 (167)
T ss_pred HHHHHHHHHHHHH-HHHHH--HHHHHHHHhH
Confidence 3344445555554 22222 2247766544
No 83
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.60 E-value=1.2e+02 Score=30.35 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=35.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 510 TGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 510 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.+++.++++-.+.+..+-.....+|++|++.|-.+ ++-+++++|-+-=+.++|++
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e----emQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTE----EMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777888888877754 34444444444444444554
No 84
>PRK11415 hypothetical protein; Provisional
Probab=53.55 E-value=71 Score=27.24 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=44.2
Q ss_pred HHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 534 LKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
-.+++.+|+.+ .+..+.-.++=..+|+++...- ..... .-+.++..+++++-.|+.+|..+|..
T Consensus 5 ~~d~I~~Lk~~--D~~F~~L~~~h~~Ld~~I~~lE--~~~~~-----------~~d~~i~~LKk~KL~LKDeI~~~L~~ 68 (74)
T PRK11415 5 YRDLISRLKNE--NPRFMSLFDKHNKLDHEIARKE--GSDGR-----------GYNAEVVRMKKQKLQLKDEMLKILQQ 68 (74)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHH--cCCCC-----------CCHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34667778876 6777777777777777777642 11111 11566788899999999999998864
No 85
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=53.48 E-value=2.3e+02 Score=27.89 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRD 506 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 506 (616)
+...++.+...-..-...-.++++.+.+
T Consensus 67 I~~~l~~Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 67 ITNDLAAAEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 86
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.24 E-value=1.7e+02 Score=32.96 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=21.0
Q ss_pred ccccchhhhhhHHHHHHHHHHHH---HHHHHHHHhhh
Q 007137 581 KKTGIRDSENRVAAQQQKITALR---QEVENLLELID 614 (616)
Q Consensus 581 ~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~ 614 (616)
|...-+.|+.++.....|+.++. ...++++-.|.
T Consensus 277 kv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lk 313 (446)
T KOG4438|consen 277 KVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELK 313 (446)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 33334468888888888888888 33444443333
No 87
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=53.19 E-value=1.5e+02 Score=34.85 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHH-----hHhhHHHHHHHHHHHhccCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 007137 476 WDEVQAAIQQVENVINR-----CLTTHDKLEASLRDLSRTGDVQACKA----ARKAADGLLKELSKELKLVLSFLQSSSA 546 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~d~~~~~~----~~k~~~~~~k~~~~~~~~~~~~l~~~~~ 546 (616)
|+..+..+++++.++.. -....+.|-++++.+..+-+..+... .-+.+-..++.+.++|..+...+..
T Consensus 88 ~~~~~~~l~~le~~f~e~~~~gl~~~l~~ff~al~~ls~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~--- 164 (613)
T PRK08471 88 TDYEFSTLQEASQYFPDLDDTGILKDLQDYFNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNE--- 164 (613)
T ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45567778888888863 44556778899999987665543321 2233444444555555555554444
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 547 ASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 547 ~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++...|.++..+-+++.++ .+....+ |-.-.++ -- ..+..+|+.|..|+-.+++
T Consensus 165 --~i~~~V~~iN~ll~~Ia~L--N~qI~~~---~~~g~~~-~~---ndL~DqRD~ll~eLS~~v~ 218 (613)
T PRK08471 165 --ELKVTVDEINSLGKQIAEI--NKQIKEV---EAGKTLK-HA---NELRDKRDELELTLSKLVG 218 (613)
T ss_pred --HHHHHHHHHHHHHHHHHHH--HHHHHhh---hcCCCCC-Cc---hhhHHHHHHHHHHHHhhcC
Confidence 4778888888888888775 3333221 2110111 11 2366777777777766654
No 88
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.74 E-value=1.3e+02 Score=30.43 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDL 507 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 507 (616)
..+++-+..++.+|...+.+++.|-..+
T Consensus 99 ~r~i~a~K~~l~~R~~~~~~~~~a~k~l 126 (198)
T cd07630 99 SRYSESEKDMLFRRTCKLIEFENASKAL 126 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777766666553333
No 89
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.57 E-value=1.2e+02 Score=26.97 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 500 LEASLRDLSRTG-DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 500 ~~~~~~~~~~~~-d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+...+...+.+| |.+.+.+--+.+..+.+++..++..+..+|.
T Consensus 55 ~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 55 LSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455543 5555555555555555555555555444443
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.35 E-value=1.4e+02 Score=38.20 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+.+..++....+++.++..+.+++..++....
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e 853 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQ 853 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444433
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.35 E-value=2.4e+02 Score=33.02 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=11.9
Q ss_pred HHhHhhHHHHHHHHHHHhccCchHHHHHHH
Q 007137 491 NRCLTTHDKLEASLRDLSRTGDVQACKAAR 520 (616)
Q Consensus 491 ~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~ 520 (616)
+.+-..-+.+++.++ .+-++-+.-++.|
T Consensus 238 e~l~~~n~~l~e~i~--e~ek~~~~~eslr 265 (581)
T KOG0995|consen 238 EDLKKTNRELEEMIN--EREKDPGKEESLR 265 (581)
T ss_pred HHHHHHHHHHHHHHH--HHhcCcchHHHHH
Confidence 344444444444444 3334444333333
No 92
>PRK11281 hypothetical protein; Provisional
Probab=52.10 E-value=2.2e+02 Score=36.09 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 497 HDKLEASLRDLSRTG----DVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~----d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
-+.++++++-|.+.. +.++++..-..+.++.++..+++..+..
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 455555655554433 3445555555555566666666555443
No 93
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.05 E-value=2.5e+02 Score=29.26 Aligned_cols=39 Identities=33% Similarity=0.238 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.+.+.+|.++|.+|++.+..++.. .+++++--.++++++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~----------~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQE----------LEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 345666666677777666655543 234444445555554
No 94
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.62 E-value=95 Score=27.61 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=19.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 585 IRDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 585 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
++.+..+|+.+..+..++.++++.++-.|
T Consensus 76 ~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 76 VKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455566666777777777777776554
No 95
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.47 E-value=2.2e+02 Score=27.10 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcccceecccccccc
Q 007137 558 VAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
++.-.++++.+..-... .++|+++
T Consensus 112 ~~a~~el~~~~~~lA~~---~A~kil~ 135 (159)
T PRK09173 112 TDAINAVRSSAVDLAIA---AAEKLLA 135 (159)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33455555554222222 2477663
No 96
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=51.43 E-value=2.3e+02 Score=27.39 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKE 529 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~ 529 (616)
..++.|+...+.....
T Consensus 168 ~~l~~a~~~f~~~~~~ 183 (229)
T PF03114_consen 168 EKLEEAKEEFEALNEE 183 (229)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=51.27 E-value=2e+02 Score=34.78 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007137 517 KAARKAADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~l 541 (616)
+.....+.++++.+.+++..+...+
T Consensus 199 ~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 199 EKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 98
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.04 E-value=1.5e+02 Score=34.34 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
.+.+++.++++++++.+++..+-..|.
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666665555444
No 99
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.55 E-value=1.8e+02 Score=33.04 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHH------hHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--cc
Q 007137 476 WDEVQAAIQQVENVINR------CLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AA 547 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~ 547 (616)
|+......++++.++.. -......|-++++.+..+-+..+ +|..+-++-+.|.+.++.+...|+.-. ..
T Consensus 77 ~~~~~~~l~~le~~~~e~~~~~gl~~~l~~ff~a~~~la~~P~~~~---~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~ 153 (483)
T PRK07521 77 QDTLADGLERLASTVGDNDYEGSPSARLSDFQAALQTAASSPDNTT---LAQAAVDAAQDLANSLNDASDAVQSARADAD 153 (483)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888862 45567888899999987766554 344444445555555554444443321 13
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
.++...|.++..+-+++.++ .+..... | ..|.. - ..+..+|++|..|+-.+++
T Consensus 154 ~~i~~~V~~iN~l~~~Ia~L--N~~I~~~---~--~~g~~---~-ndL~DqRD~ll~~LS~~v~ 206 (483)
T PRK07521 154 AEIADSVDTLNDLLAQFEDA--NNAVVSG---T--ATGRD---A-SDALDQRDKLLKQISQIVG 206 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHh---c--cCCCC---c-hhhHHHHHHHHHHHHhhcC
Confidence 45778888888888888875 3333221 1 23421 2 3466777777777776654
No 100
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=50.52 E-value=2.3e+02 Score=30.40 Aligned_cols=123 Identities=23% Similarity=0.237 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHH-----hHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccc
Q 007137 476 WDEVQAAIQQVENVINR-----CLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AAS 548 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~ 548 (616)
|+..+...+++..++.. -......|-++++.+..+-+..+ +|..+-+.-+.+.+.++.+-..|+.-- ...
T Consensus 83 ~~~~~~~l~~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~---~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~ 159 (322)
T TIGR02492 83 ADSRASALSQIENLFNDLDESGLSTYLNNFFNALQELAKNPDSEA---LRQAVLESAQALANSFNQTSNELQDLRKGINA 159 (322)
T ss_pred HHHHHHHHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788777752 33567788888888887765543 344444444555555555444444321 124
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++...|.++..+-+++.++ .+....+ +-. +|.. - ..+..+|++|..++-.+++
T Consensus 160 ~i~~~V~~iN~ll~~Ia~l--N~~I~~~---~~~-~g~~---~-n~L~DqRD~ll~~LS~~v~ 212 (322)
T TIGR02492 160 EIKSAVTEINSLLKQIASL--NKEIQQV---EAK-SGQD---A-NDLLDQRDLLLKELSQLIG 212 (322)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH---hcc-CCCC---c-hHhHHHHHHHHHHHHhHcC
Confidence 4777778887777777774 3333221 211 2321 1 3466677777777766653
No 101
>PRK10869 recombination and repair protein; Provisional
Probab=50.18 E-value=1.5e+02 Score=34.39 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
.+.+++.++++++++..++..+.+.|+
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556665555555554443
No 102
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.11 E-value=1.8e+02 Score=36.75 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=7.3
Q ss_pred eeecCCCCccCeeEEe
Q 007137 282 LIAKMPPRVHSVYYRD 297 (616)
Q Consensus 282 l~~~LP~~A~dvYYrD 297 (616)
+.+.|+.+...+=-.|
T Consensus 535 ie~alG~~l~~vVV~~ 550 (1163)
T COG1196 535 LEAALGNRLQAVVVEN 550 (1163)
T ss_pred HHHHcccccCCeeeCC
Confidence 4444554444444433
No 103
>PF08441 Integrin_alpha2: Integrin alpha; InterPro: IPR013649 This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of IPR013517 from INTERPRO repeats and to the N terminus of the IPR013513 from INTERPRO cytoplasmic region. ; PDB: 1M1X_A 1U8C_A 1L5G_A 3IJE_A 1JV2_A 2VDN_A 2VC2_A 3NIF_A 3NIG_C 2VDM_A ....
Probab=49.95 E-value=4e+02 Score=29.57 Aligned_cols=86 Identities=15% Similarity=0.275 Sum_probs=54.3
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-ceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCcceEEEE
Q 007137 38 IDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAV 116 (616)
Q Consensus 38 IDLs~~~Vk~t~~i~vkN~g~~p-~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~~~~y~V 116 (616)
+-|+ +--.+..+++|+|.|..+ ...+++.+|+. |.|..+...... ...+.+....... + ....-
T Consensus 185 l~lg-~~~~l~l~v~v~N~GE~AY~a~l~v~~P~~----l~~~~v~~~~~~------~~~~~C~~~~~~~---~-~~~~C 249 (457)
T PF08441_consen 185 LVLG-SDNTLNLNVTVTNKGEDAYEAKLTVTYPSG----LSYSKVEKKQNS------DSPISCSQPESNS---S-STVSC 249 (457)
T ss_dssp EECS-S-EEEEEEEEEEESSS-BSSEEEEEEEETT----EEEEEEE-SSSS------SC--EEEEEESSS---S-CEEEE
T ss_pred EEEC-CCCEEEEEEEEEECCCCCCceeEEEECCCC----cccccccccccc------ccceecccCCCCC---c-eEEEE
Confidence 6666 447889999999999766 67777888875 677666511111 1233455433221 1 15677
Q ss_pred EcCCCCCCCCeEEEEEEEEecc
Q 007137 117 KLPKALGKGDSYTFDVLAVFAH 138 (616)
Q Consensus 117 ~Lp~pl~pg~~vtl~V~~v~t~ 138 (616)
.|..|+.+|+++++.+.+-...
T Consensus 250 ~lgnPl~~~~~~~~~l~f~~~~ 271 (457)
T PF08441_consen 250 SLGNPLKRGSQVTFSLRFDVSS 271 (457)
T ss_dssp EEETSBBTTEEEEEEEEEEE-T
T ss_pred ECChhhhcCCcceEEEEeeccc
Confidence 8899999999898888876543
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=49.88 E-value=1.3e+02 Score=35.86 Aligned_cols=122 Identities=12% Similarity=0.088 Sum_probs=67.4
Q ss_pred HHhHhhHHHHHHHHHHHhccCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 491 NRCLTTHDKLEASLRDLSRTGDVQ------------ACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 491 ~~r~~~~~~~~~~~~~~~~~~d~~------------~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
.+.-..-..|+.-.+++|+..+.. -.++-.+..+.++-++...+.+|++++.++-...|-+-+ ++|
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~--Dlq 568 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS--DLQ 568 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh--hHH
Confidence 333335556677778888876642 234444555555555556677777777665223333333 666
Q ss_pred HHHHHHHHHHHhcccceecccc----cc------ccch--hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 559 AKEKDLQEKVMAKHSTVVDCYE----KK------TGIR--DSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~e----~~------~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
|-.+.-||-..+++..+|--.+ ++ .+-| +...||..+|+.+++...+-+.+...+.
T Consensus 569 k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 569 KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6555554444444444331111 11 1111 4666777788888887777777665543
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.84 E-value=2.3e+02 Score=31.17 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKD 563 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~ 563 (616)
..-|.-.+.|..+..+++.+ ...+--+++++++.-++
T Consensus 123 ~k~k~~~q~LE~li~~~~EE--n~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREE--NQCLQLQLDALQQECGE 159 (401)
T ss_pred HHhcchHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHhH
Confidence 34455566777777777766 44444455555444333
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.33 E-value=2.4e+02 Score=33.73 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhh
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSEN 590 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 590 (616)
.++-...++++.++.-.+.+.+++..+.+.++.+ ...+..+.+.|++.-.+++.++ .+. ...+.
T Consensus 313 ~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~--~~~a~~~~~~L~~~l~~~~~~~-~~~-------------~~~~~ 376 (754)
T TIGR01005 313 ANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQ--ADAAQARESQLVSDVNQLKAAS-AQA-------------GEQQV 376 (754)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HhC-------------cHhHH
Confidence 4455555555555555555555555555555443 2222222323333333333222 111 12244
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 591 RVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 591 ~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
++..+++..+..++--+.++..+.|
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655666555443
No 107
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.17 E-value=1.9e+02 Score=34.23 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHH-----HhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccc
Q 007137 476 WDEVQAAIQQVENVIN-----RCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AAS 548 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~ 548 (616)
|+..+..+.+++.++. .-....+.|-++++.+..+-+..+. |..+-++-+.|.+.++.+...|+.-. ...
T Consensus 95 ~~~~~~~l~~le~if~e~~~~gl~~~l~~ff~al~~ls~~P~~~a~---R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~ 171 (627)
T PRK06665 95 WKTKDKYLSQLEQVYNEPEDQSLRTRLDDFWDSWQDLSNYPEGLAE---RQVVLERAQSLGERIHDRYRSLERIRDMAND 171 (627)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888885 3445677888899998877665543 44444444444444444444443320 124
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++...|.++..+-+++.++ .+....+ |. .|. +- ..+..+|++|..|+-.+++
T Consensus 172 ~i~~~V~~iN~ll~qIa~L--N~qI~~~---~~--~g~---~~-ndLlDqRD~ll~eLS~~v~ 223 (627)
T PRK06665 172 EIEITVEEINNILRNIADL--NEQIVKS---QA--MGD---NP-NDLLDRRDLLVDKLSSLID 223 (627)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh---hc--CCC---Cc-hhhHHHHHHHHHHHHhhcC
Confidence 4777788888888888775 3333322 21 232 12 3466667777777666553
No 108
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=49.09 E-value=3.4e+02 Score=28.76 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDV------QACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~------~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.++.+-+....-++..+.-|+.|-.++.-+..+.+. +.+++..++.+.....|.+++..+-++++.
T Consensus 28 ~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 28 EIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466666777777888888899998888877765443 234444444455555555555555444443
No 109
>PF13166 AAA_13: AAA domain
Probab=48.98 E-value=2.3e+02 Score=33.43 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007137 513 VQACKAARKAADGLLKELSKEL 534 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~ 534 (616)
...+..+-..+...+..+.+.|
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L 345 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKAL 345 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 110
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.61 E-value=2.1e+02 Score=32.25 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHH----HhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--cccc
Q 007137 476 WDEVQAAIQQVENVIN----RCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AASQ 549 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~~ 549 (616)
|+.......+++.++. .-......|-++++.+..+-+..+ +|..+-+.-+.+.+.++.+-..|..-- ...+
T Consensus 84 ~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~a~~~la~~P~~~~---~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~ 160 (456)
T PRK07191 84 YDAGEQYFNALELVVGNKSTSLATGLNNFFSALSAATQLPDSPP---MRQQVIESANAMALRFNNVNNFIVQQKKSIGQQ 160 (456)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778887774 334456677888888887765443 344444444444444444443333210 1234
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 550 ILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 550 ~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
+...|.++..+=+++.++ .+..... | ..|. .- ..+..+|+.|..|+-.+++
T Consensus 161 i~~~V~~iN~ll~~Ia~L--N~~I~~~---~--~~g~---~~-ndL~DqRD~ll~eLS~~v~ 211 (456)
T PRK07191 161 RDATVKQINSLTRSIADY--NQKILKN---R--SDGN---NI-SDLLDQRDLQIKKLSGLIE 211 (456)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHh---h--cCCC---CC-chhHHHHHHHHHHHHhhcC
Confidence 777888888888888775 3333221 2 1332 11 3456667777777666554
No 111
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.46 E-value=3.4e+02 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
++.-..+.--++-.+-++|.++++.+..+|.-
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444445666777777777777777764
No 112
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.41 E-value=3.1e+02 Score=27.78 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.7
Q ss_pred hhchHHHHHHHH
Q 007137 473 RLQWDEVQAAIQ 484 (616)
Q Consensus 473 ~~~~~~~~~~~~ 484 (616)
++-|+.+.++++
T Consensus 72 k~~~~pI~~vLe 83 (204)
T PRK09174 72 RVILPRIGGIIE 83 (204)
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 113
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.20 E-value=2.8e+02 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 498 DKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 498 ~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+.+++.+.+.+ +.+....+.++.++.++.++..++.....+.+
T Consensus 33 rd~e~~l~~a~--~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 33 RDMEEQLRKAR--QALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 45778888899999999999999988776544
No 114
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.89 E-value=1.9e+02 Score=31.08 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHH---HHHH-----hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEAS---LRDL-----SRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~-----~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+++.+.++++..++.-..+|+..++- .+-| +.++-+..+......+..+++++.+.|+.|.+..+
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~ 252 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEK 252 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877777777776665431 1111 22344445555555555555555555555555544
No 115
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.80 E-value=2.1e+02 Score=34.07 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=39.0
Q ss_pred hHHHHHHHH----HHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 476 WDEVQAAIQ----QVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 476 ~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
|+++-..-. .+..+...|+.+|..+-+ .+...++.+.++.....++++.|.+.|...
T Consensus 27 W~~igE~~~e~d~~l~~le~e~~~~y~~kve------------~a~~~~~~L~~~ia~~eael~~l~s~l~~~ 87 (660)
T KOG4302|consen 27 WDEIGESETERDKKLLRLEQECLEIYKRKVE------------EASESKARLLQEIAVIEAELNDLCSALGEP 87 (660)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 776654433 334555677777765544 445578888888888888888888888654
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.78 E-value=3.6e+02 Score=34.41 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 007137 556 ELVAKEKDLQEKV 568 (616)
Q Consensus 556 e~~~~~~~~~~~~ 568 (616)
+|+.+..+.+|++
T Consensus 1512 qi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERV 1524 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 117
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.44 E-value=1.6e+02 Score=32.58 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=11.8
Q ss_pred CceeEEEEEEeCchhhhhh
Q 007137 420 HNQFFQVYYKFSKLSMLRE 438 (616)
Q Consensus 420 h~~~~~V~Y~~~~~~~l~k 438 (616)
...-+.|+|+-+.-..-.+
T Consensus 130 ~s~ii~is~~~~dp~~A~~ 148 (444)
T TIGR03017 130 ESSVISIEFSGVDPRFAAT 148 (444)
T ss_pred CceEEEEEEeCCCHHHHHH
Confidence 3567788887776554433
No 118
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.36 E-value=4.2e+02 Score=33.14 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHH
Q 007137 476 WDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVE 555 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~ 555 (616)
|++....-..+...+++--...+++++..++ ...++.+......+.-.+.+.|.++|+.|++..-..+..++.
T Consensus 296 ~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~------le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~- 368 (1072)
T KOG0979|consen 296 QRELNEALAKVQEKFEKLKEIEDEVEEKKNK------LESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEED- 368 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhH-
Confidence 3344444444444444444444444444333 234445555556666667788889999999764333444443
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
|...+++.+. +.... .-.+..++++ +.-.+|.-++.+.-+++-
T Consensus 369 --~ei~~~~~~~----~~~~~-----~~~~~~id~~-~~~~~~~~~l~~~kr~~~ 411 (1072)
T KOG0979|consen 369 --QEIMKEVLQK----KSSKL-----RDSRQEIDAE-QLKSQKLRDLENKKRKLK 411 (1072)
T ss_pred --HHHHHHHHHH----Hhhhh-----hhhhhhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 3333333332 22211 1134567777 777777777766665553
No 119
>PF13514 AAA_27: AAA domain
Probab=47.25 E-value=1.1e+02 Score=38.32 Aligned_cols=77 Identities=29% Similarity=0.322 Sum_probs=51.9
Q ss_pred HHhHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 491 NRCLTTHDKLEASLRDLSR-TGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 491 ~~r~~~~~~~~~~~~~~~~-~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
+.-+.-|+.++..++.... ..+...+..+...++.++.++..+++.+...+..-..-..+.+.+.+++.++.++.++
T Consensus 153 n~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l 230 (1111)
T PF13514_consen 153 NQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAEL 230 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 3334445555555555443 3455667777777778888888888888777766444566788888888888887754
No 120
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.93 E-value=2.5e+02 Score=26.51 Aligned_cols=104 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHH
Q 007137 477 DEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEE 556 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e 556 (616)
++-...-|.+..-+.+...-.+++...+.+++ ...+.+...-..++.+.+.+..++..+...+|.+ -.|
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~--~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~---------kee 116 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLK--EQLEELERELASAEEKERQLQKQLKSLEAKLKQE---------KEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q ss_pred HHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHH
Q 007137 557 LVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITA 601 (616)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~ 601 (616)
++++-..++..- .++...+ -|+ |.|+..++.++.+
T Consensus 117 ~~klk~~~~~~~-tq~~~e~---rkk------e~E~~kLk~rL~q 151 (151)
T PF11559_consen 117 LQKLKNQLQQRK-TQYEHEL---RKK------EREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHH-HHHHHHH---HHH------HHHHHHHHHHhcC
No 121
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=46.90 E-value=2.4e+02 Score=31.70 Aligned_cols=120 Identities=13% Similarity=0.169 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHH-----hHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccc
Q 007137 476 WDEVQAAIQQVENVINR-----CLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AAS 548 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~ 548 (616)
|+.....+.++..++.. -......|-++++++..+-+..+ +|..+-+.-+.+.+.+..+-..|+.-. ...
T Consensus 88 ~~~~~~~l~~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~---~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~ 164 (431)
T PRK06799 88 YNYMNSALSRVESMVGTTGKNSLSSLMDGFFNAFREVAKNPEQAN---YYDTLISETGKFTSQLNRLAKGLDELEAQTTE 164 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCcCchHHHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788887752 44557788889999888776554 344444444555555555544443320 124
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++...|.++..+=+++.++ .+..... +| ++- ..+..+|+.|..|+-.+++
T Consensus 165 ~i~~~V~~iN~ll~~Ia~L--N~~I~~~-------~~---~~~-ndL~DqRD~ll~eLS~~i~ 214 (431)
T PRK06799 165 DIEAHVNEFNRLAKSLAEA--NKKIGQA-------GT---QVP-NQLLDERDRILTEMSKYAN 214 (431)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHc-------CC---CCc-hhhHHHHHHHHHHHHhhcC
Confidence 4777788888777777764 2222211 23 222 4566677777777666653
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.81 E-value=96 Score=33.42 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 007137 593 AAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
..++++++.+...++...+-||
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444443
No 123
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.68 E-value=1.7e+02 Score=26.46 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
+..+.+.+.. +++|+ +.+|..+..+-..+|+..++-.-..++.+.++++.++.++-..
T Consensus 37 ~~~l~~~~~~-~~~Rl---~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 37 IEKLEERLDE-HDRRL---QALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHH-HHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444433 46666 4689999999999999999999999999888888888776443
No 124
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.64 E-value=2.2e+02 Score=35.97 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 509 RTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 509 ~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
+.++++.|+-.-..++.+.+.+..++..|...+++. ..-.++-..++-+....++|.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~--~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGL--EEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 456666676666677777777777777777777664 333444444444444444443
No 125
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=46.07 E-value=1.9e+02 Score=35.52 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=5.1
Q ss_pred EEEEEeCCC
Q 007137 50 TLKVENEGS 58 (616)
Q Consensus 50 ~i~vkN~g~ 58 (616)
.|.++|..+
T Consensus 4 ~l~~~nf~s 12 (1179)
T TIGR02168 4 KLELAGFKS 12 (1179)
T ss_pred EEEEeCccc
Confidence 456666553
No 126
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=45.98 E-value=3e+02 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhccCchHHH
Q 007137 498 DKLEASLRDLSRTGDVQAC 516 (616)
Q Consensus 498 ~~~~~~~~~~~~~~d~~~~ 516 (616)
..+.+.++++..++|...+
T Consensus 10 ~~~~~~~~~~~~~~~~~Ev 28 (155)
T PF07464_consen 10 KEFQEQVNKLLGSQNQQEV 28 (155)
T ss_dssp HHHHHHHHHHTSS--SS-S
T ss_pred HHHHHHHHHHhCCCcHHHH
Confidence 3444555555555544443
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.43 E-value=2.6e+02 Score=26.13 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
+++.+-+++..+-..|-.+-+.+-..... +-...+.......++.+++++.+....++.-|.. =.+.|+||
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~---~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE------K~E~veEL 101 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEE---NEELRALKKEVEELEQELEELQQRYQTLLELLGE------KSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hHHHHHHH
Confidence 44555566666666666555555443332 3333344444455555555555555555555443 35666666
Q ss_pred HHHHHHHHHHH
Q 007137 558 VAKEKDLQEKV 568 (616)
Q Consensus 558 ~~~~~~~~~~~ 568 (616)
+.==..+|+.+
T Consensus 102 ~~Dv~DlK~my 112 (120)
T PF12325_consen 102 RADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 128
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.38 E-value=1.3e+02 Score=33.00 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 516 CKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
|.++-+.-..+.|++.+.++.+...+.
T Consensus 37 C~ssI~~QkkrLk~L~~sLk~~~~~~~ 63 (330)
T PF07851_consen 37 CSSSISHQKKRLKELKKSLKRCKKSLS 63 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 333333333344555555555544433
No 129
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=44.95 E-value=2.1e+02 Score=35.37 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.7
Q ss_pred EEEEEeCC
Q 007137 50 TLKVENEG 57 (616)
Q Consensus 50 ~i~vkN~g 57 (616)
.|.+.|..
T Consensus 4 ~l~l~nf~ 11 (1164)
T TIGR02169 4 RIELENFK 11 (1164)
T ss_pred EEEEeCee
Confidence 34455543
No 130
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.90 E-value=3e+02 Score=31.89 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+..++.+.+..--+-...|...+.-..++..+ ...|++++.+++++++.+..|+..|-+.
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a------E~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESA------EKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443322 4467777777888888777777777664
No 131
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=44.76 E-value=2.9e+02 Score=26.53 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.1
Q ss_pred ccccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 579 YEKKTGIR-----DSENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 579 ~e~~~~~~-----~~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
+|+.+... +..+-+.++.+|++.|++.|+.++++
T Consensus 95 ~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~ 133 (146)
T PF08702_consen 95 LETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERY 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555443 57777888999999999999988875
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.71 E-value=3.1e+02 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 007137 594 AQQQKITALR 603 (616)
Q Consensus 594 ~~~~k~~~~~ 603 (616)
.+++++++++
T Consensus 176 ~l~~~~~~~~ 185 (191)
T PF04156_consen 176 QLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 133
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.63 E-value=4.2e+02 Score=31.82 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 497 HDKLEASLRDLSRTGDVQAC-------KAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~d~~~~-------~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
.+..|+++++|++..++-.. -..-..+++++.++..+.+++.+.... -.+.|.+++....+++.
T Consensus 283 L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~------~hP~v~~l~~~~~~L~~ 353 (726)
T PRK09841 283 LDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK------DHPTYRALLEKRQTLEQ 353 (726)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHHHHHHH
Confidence 45778899999987644322 222233444444444444444444333 33445555544444433
No 134
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=44.43 E-value=1.9e+02 Score=35.74 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=7.9
Q ss_pred EEEEEeeeeeeE
Q 007137 233 REIEISHWGNVQ 244 (616)
Q Consensus 233 R~IEVSHWGNIa 244 (616)
.-|++.+|++..
T Consensus 3 ~~l~l~nf~s~~ 14 (1164)
T TIGR02169 3 ERIELENFKSFG 14 (1164)
T ss_pred eEEEEeCeeeEC
Confidence 346777787655
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.11 E-value=1.8e+02 Score=29.38 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=35.8
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHH
Q 007137 470 YLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQA 515 (616)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~ 515 (616)
++..+.| +-..+.+.+..+...|-.+|+.|++++.++.+-.+...
T Consensus 101 ~l~~Lk~-e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn 145 (201)
T PF13851_consen 101 ELKDLKW-EHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKN 145 (201)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677 67788888999999999999999999999877554443
No 136
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.08 E-value=4.1e+02 Score=27.95 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=47.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG----DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
.||+ .-...++++...+..|..+=+.+-..|.++.+.- ...+|..+-..+-.+...+.+.=..+..+|+
T Consensus 19 ~r~k--~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~ 91 (269)
T cd07673 19 HNMK--HGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQ 91 (269)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5563 4566799999999999999999999999998753 3346666666555554444444444444444
No 137
>PRK12705 hypothetical protein; Provisional
Probab=44.07 E-value=5.7e+02 Score=29.67 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 007137 441 MLIFGFFSLFV 451 (616)
Q Consensus 441 ~i~~~~f~lFl 451 (616)
++++.++++|+
T Consensus 12 ~~~~~~~~~~~ 22 (508)
T PRK12705 12 LLIGLLLGVLV 22 (508)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 138
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=44.05 E-value=1.5e+02 Score=30.44 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=8.0
Q ss_pred HHHHHhHhhHHHHHHHHH
Q 007137 488 NVINRCLTTHDKLEASLR 505 (616)
Q Consensus 488 ~~~~~r~~~~~~~~~~~~ 505 (616)
.++.+|...+..+++|-.
T Consensus 124 ~~l~rR~ral~~~q~A~k 141 (219)
T cd07621 124 DLLYRRLRCLANYENANK 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 139
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=43.96 E-value=64 Score=32.03 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccce
Q 007137 524 DGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTV 575 (616)
Q Consensus 524 ~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~ 575 (616)
+..+++..+.+..+....... .+.++.+++.++++.-+...+.+ .++...
T Consensus 74 ~~~l~ea~~~i~~i~~~~~~i-~~~~~~~~~~~~~~~~~~I~~~v-~~~P~~ 123 (199)
T PF10112_consen 74 REILEEAKEKIRRIEKAIKRI-RDLEMIEKVSRIEKIARRIFKYV-EKDPER 123 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHH-HHCHHh
Confidence 333444444555555555443 25566677777777666666654 555443
No 140
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.91 E-value=2.6e+02 Score=37.43 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.4
Q ss_pred CCcEEEEEec
Q 007137 405 GRPVVVLQKT 414 (616)
Q Consensus 405 GRpvVvl~~~ 414 (616)
|++.|-+++.
T Consensus 750 G~tKvFfkaG 759 (1930)
T KOG0161|consen 750 GHTKVFFKAG 759 (1930)
T ss_pred cceeeeehHH
Confidence 5555555544
No 141
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=43.53 E-value=2.7e+02 Score=28.74 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 007137 587 DSENRVAAQQQKITALRQEV 606 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~ 606 (616)
|.|.+|+..+.-..-|++=|
T Consensus 195 ~~E~~ik~ak~~~~~~~~~~ 214 (218)
T cd07663 195 MTELEIKHAKNNVSLLQSCI 214 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666555544444444433
No 142
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.00 E-value=4e+02 Score=27.54 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=6.7
Q ss_pred HHHHHHHHh
Q 007137 447 FSLFVAGIV 455 (616)
Q Consensus 447 f~lFl~~i~ 455 (616)
|+||+++++
T Consensus 105 f~LFL~lvI 113 (216)
T KOG1962|consen 105 FVLFLSLVI 113 (216)
T ss_pred HHHHHHHHH
Confidence 678887775
No 143
>PRK10807 paraquat-inducible protein B; Provisional
Probab=42.91 E-value=2.9e+02 Score=32.18 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 589 ENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
-+++..--+.++++.+++..|+++|++
T Consensus 499 ~~~l~~tl~~l~~~~r~lr~l~~~L~~ 525 (547)
T PRK10807 499 YNKMVADMQRLDQVLRELQPVLKTLNE 525 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334344455577777777777777765
No 144
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.79 E-value=1.1e+02 Score=35.57 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=61.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHH----HHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEA----SLRDLSRTGD---VQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~d---~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
|+-.-.++..-+.++...+++-..+|..+.. ++++++..=. .+.|.=..-.++.+.+.+.++|......|+.-
T Consensus 196 A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 196 AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 4433345566666777777777676666544 3333322100 00111112346777788888888877777764
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 545 SAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-DSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 545 ~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
.--.+.+++.+|...=.++-+.+ ||-+..+ +++.....+.+.+.++++..+.+..
T Consensus 276 -~l~~~~~~~~~i~~~Id~Lyd~l-----------ekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 276 -DLDEAEEKNEEIQERIDQLYDIL-----------EREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 12333444444433333333322 3333322 4444444444444444444444433
No 145
>PRK02224 chromosome segregation protein; Provisional
Probab=42.71 E-value=2e+02 Score=34.78 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=6.9
Q ss_pred EEEEEEeCCC
Q 007137 49 STLKVENEGS 58 (616)
Q Consensus 49 ~~i~vkN~g~ 58 (616)
..|.++|.++
T Consensus 4 ~~l~l~nf~~ 13 (880)
T PRK02224 4 DRVRLENFKC 13 (880)
T ss_pred EEEEEECccc
Confidence 3577888774
No 146
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=42.40 E-value=2.6e+02 Score=33.48 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHH----hHhhHHHHHHHHHHHhccCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCccccch
Q 007137 479 VQAAIQQVENVINR----CLTTHDKLEASLRDLSRTGDVQACKA----ARKAADGLLKELSKELKLVLSFLQSSSAASQI 550 (616)
Q Consensus 479 ~~~~~~~~~~~~~~----r~~~~~~~~~~~~~~~~~~d~~~~~~----~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~ 550 (616)
....++++..++.. -....+.|-++++.+..+-+..+... .-+.+-..++.+.++|.++...+. .++
T Consensus 87 ~~~~l~~ld~ll~~~~~gls~~L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn-----~qI 161 (676)
T PRK05683 87 YLGQISQLDKLLSDSTTGISPALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNIN-----SQL 161 (676)
T ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 34456666666532 33456777888888887765543221 223333444444444444444444 447
Q ss_pred hHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 551 LPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 551 ~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
...|.++..+=+++.++ .+....+ + ..|. .- ..+..+|++|..|+..+++
T Consensus 162 ~~~V~~IN~l~~qIA~L--N~qI~~~---~--~~G~---~~-NdLlDqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 162 SAMTDQVNNLTTSIASY--NKQIAQA---S--ASGA---TP-NDLLDARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHh---h--cCCC---Cc-hHhHHHHHHHHHHHHhhcC
Confidence 77888888888877774 3332221 1 1232 11 3466777777777776654
No 147
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.34 E-value=3.4e+02 Score=26.60 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 007137 559 AKEKDLQEKV 568 (616)
Q Consensus 559 ~~~~~~~~~~ 568 (616)
+...++.|.+
T Consensus 121 ~~~~~~~~~~ 130 (155)
T PRK06569 121 QFRTNKSEAI 130 (155)
T ss_pred HHHHhHHHHH
Confidence 4444555544
No 148
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=42.28 E-value=2.6e+02 Score=28.76 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVEN 608 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 608 (616)
|..+.-++++..+....... ++|.++ +.++.+ .+++=+++..+++++
T Consensus 113 E~~~a~~~l~~ei~~la~~~---A~kil~-~~~d~~--~~~~lid~~i~~l~~ 159 (246)
T TIGR03321 113 EQAALSDELRRRTGAEVFAI---ARKVLT-DLADTD--LEERMVDVFVQRLRT 159 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH-HhcChH--HHHHHHHHHHHHhhc
Confidence 44444555555553333333 477764 333332 233334444444433
No 149
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.05 E-value=2.9e+02 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 007137 439 PFMLIFGFFSLF 450 (616)
Q Consensus 439 PL~i~~~~f~lF 450 (616)
|++++.++.++|
T Consensus 9 ~~~~i~flil~~ 20 (140)
T PRK07353 9 PLMAVQFVLLTF 20 (140)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 150
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.98 E-value=4e+02 Score=27.33 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHH
Q 007137 485 QVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDL 564 (616)
Q Consensus 485 ~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~ 564 (616)
++...++.-........+++|++-.=..+.+++..-...|.++++..+++.+.-.. ..+.++.-..-.+++
T Consensus 6 ~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~---------Y~~ai~~Rs~sQrEv 76 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAA---------YDDAIQQRSSSQREV 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 33444444444445566677776665566666666666666666666555544333 334455555666778
Q ss_pred HHHHHhcccceeccccccccc----hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 565 QEKVMAKHSTVVDCYEKKTGI----RDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 565 ~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
-++|--+++=--.-.||.+.= -..+.+.+..+.+++++..+++.+-+.|
T Consensus 77 n~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 77 NELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred HHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887633333111112554431 1244444666777777777777766554
No 151
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=41.98 E-value=1.3e+02 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.2
Q ss_pred EEEcCCCCCCCCeEEEEEEEE
Q 007137 115 AVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 115 ~V~Lp~pl~pg~~vtl~V~~v 135 (616)
.|.=+.|++||++.++.|+..
T Consensus 333 ~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 333 EVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred eeCCCCCcCCCcceEEEEEEe
Confidence 555567999999999998853
No 152
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=41.75 E-value=2.2e+02 Score=27.24 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhc
Q 007137 524 DGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAK 571 (616)
Q Consensus 524 ~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~ 571 (616)
.+++.....+|+.++.++.+. ---++-+++||+..++.++|.=..+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a--~~~~~~r~seldqA~~~~~eae~k~ 59 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASA--EQALNGRRSELDQANKKVKEAEIKQ 59 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 345555777888899988875 3447889999999999999954333
No 153
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.55 E-value=3.3e+02 Score=34.57 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=25.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 510 TGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 510 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+.+++.|++--..++.....+..++.+.+..|+.+
T Consensus 439 ~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~ 473 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEELLEKEERELDEILDSLKQE 473 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566777777777777777777777777777776
No 154
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=41.50 E-value=2.1e+02 Score=25.96 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHh--HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHH
Q 007137 478 EVQAAIQQVENVINRC--LTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVE 555 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~ 555 (616)
.+...++++...+++- -..++.+++.....+..+..=++-.-+..+|. ++.+++.+...++..+ .+++...+.
T Consensus 27 ~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~----i~~sl~rl~~~i~~~d-k~~~l~el~ 101 (121)
T PF14276_consen 27 SIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN----IDISLARLKGYIEAKD-KSESLAELA 101 (121)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH----HHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 4566677776666554 66677777777777766666666555555554 7788888888888752 344444444
Q ss_pred HHHHHHHHHHH
Q 007137 556 ELVAKEKDLQE 566 (616)
Q Consensus 556 e~~~~~~~~~~ 566 (616)
++..+=+.+.|
T Consensus 102 ~lk~~i~~i~~ 112 (121)
T PF14276_consen 102 ELKELIEHIPE 112 (121)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 155
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=41.33 E-value=2.1e+02 Score=28.10 Aligned_cols=19 Identities=5% Similarity=0.405 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 007137 597 QKITALRQEVENLLELIDE 615 (616)
Q Consensus 597 ~k~~~~~~~~~~~~~~~~~ 615 (616)
+=..+.++.||.++..|.|
T Consensus 139 ~~sk~av~qId~iik~leE 157 (160)
T PF03978_consen 139 EMSKDAVEQIDKIIKFLEE 157 (160)
T ss_pred HhHHHHHHHHHHHHHHHhc
Confidence 3456778889999999987
No 156
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=41.32 E-value=4.8e+02 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
|++|-+.-...+.++++++..++.++
T Consensus 446 IdtE~k~R~~eV~~vRqELa~lLssv 471 (531)
T PF15450_consen 446 IDTEGKAREREVGAVRQELATLLSSV 471 (531)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777888888888877654
No 157
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.85 E-value=1.2e+02 Score=31.26 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch---hhhhhHHHHHHH
Q 007137 522 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR---DSENRVAAQQQK 598 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~k 598 (616)
..|++|+.++.+|+...+.+-+.| +++=.++++|+.+.-.+..|++ .+--..| +-..+. -...++...++-
T Consensus 7 ~yEqqy~~l~a~it~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell-~qMdlEv----r~lp~~~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 7 GYEQQYRELSAEITKKIGRALSLP-GSEKKQLLSEIDSKLEEANELL-DQMDLEV----RELPPNFRSSYLSKLREYKSD 80 (220)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHH-HHHHHHH----HhCCchhhhHHHHHHHHHHHH
Confidence 568999999999999999999876 6777777888887777777775 4433333 111221 244555666666
Q ss_pred HHHHHHHHHHHH
Q 007137 599 ITALRQEVENLL 610 (616)
Q Consensus 599 ~~~~~~~~~~~~ 610 (616)
++.++.++....
T Consensus 81 l~~l~~e~k~~~ 92 (220)
T KOG1666|consen 81 LKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHHhh
Confidence 667776666554
No 158
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=40.79 E-value=5.6e+02 Score=29.44 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 007137 599 ITALRQEVENLLELIDEI 616 (616)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~ 616 (616)
+.+-.++|.++++.|++|
T Consensus 354 l~~~~~~I~~i~~~I~~I 371 (554)
T PRK15041 354 ISTSSQKIADIISVIDGI 371 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556677777766654
No 159
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=40.46 E-value=3.6e+02 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 495 TTHDKLEASLRD--LSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 495 ~~~~~~~~~~~~--~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
..|-.+.+|+.+ +.|.+=.+.+++|.|.++...-. ++++.+-..+.+
T Consensus 112 ~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-~kev~~aE~~~~ 160 (218)
T cd07662 112 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK-NKDVLQAETTQQ 160 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChHHHHHHHHH
Confidence 345555555554 35566666677777766654333 455555444444
No 160
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.12 E-value=1.4e+02 Score=30.41 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 007137 590 NRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 590 ~~~~~~~~k~~~~~~~~~~~~ 610 (616)
++++..+.++++|..+.+++-
T Consensus 146 ~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 146 NQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555443
No 161
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=40.10 E-value=3.8e+02 Score=29.06 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQ 565 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~ 565 (616)
..+.-+-.+|.++-|.++++|+++.++.+. +.+.++|++.+-++..
T Consensus 255 ~eit~~LEkI~SREK~lNnqL~~l~q~fr~------a~~~lse~~e~y~q~~ 300 (384)
T KOG0972|consen 255 KEITKALEKIASREKSLNNQLASLMQKFRR------ATDTLSELREKYKQAS 300 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 345555666666666667776666666654 3444455444444333
No 162
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.02 E-value=3.9e+02 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
+..++.+.+++.+++..|..++.. +..+.+.+.+...+.+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~------l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQE------LKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 445555555555555555444443 33444444444444333
No 163
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=2.4e+02 Score=34.40 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch-hhhhhHHHHHHHHHHHHHHH
Q 007137 533 ELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-DSENRVAAQQQKITALRQEV 606 (616)
Q Consensus 533 ~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~k~~~~~~~~ 606 (616)
++.++..+|+.+ +....+-=.|+.+++.+.+.++ ..-+..+|+.|..-.+. -+.++...+.||..++.+|+
T Consensus 793 qv~El~~~l~e~--~~~l~~~q~e~~~~keq~~t~~-~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~ 864 (970)
T KOG0946|consen 793 QVIELLKNLSEE--STRLQELQSELTQLKEQIQTLL-ERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKI 864 (970)
T ss_pred HHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHh
Confidence 344444445554 5555555666667777777664 66666666666543322 23333344444444444443
No 164
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=39.63 E-value=54 Score=34.39 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=23.2
Q ss_pred ceeccccccccch-----hhhhhHHHHHHHHHHHHHHHHHH
Q 007137 574 TVVDCYEKKTGIR-----DSENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 574 ~~~~~~e~~~~~~-----~~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
.-+|+.-|+..|+ -||++ +....-+..|.++|..+
T Consensus 232 sN~DLsaKLe~gknaY~~~ieke-~q~raeL~acEEkl~km 271 (311)
T PF04642_consen 232 SNIDLSAKLEPGKNAYLAAIEKE-NQARAELNACEEKLKKM 271 (311)
T ss_pred ccHHHHHhhcCCcchHHHHHhhH-HHHHHHHHHHHHHHhcc
Confidence 3445566777777 27777 66777777777777654
No 165
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.60 E-value=4.9e+02 Score=29.85 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+.+|-.++.-..||+-+++++=+.|
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444
No 166
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=39.56 E-value=2.3e+02 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCCCCeEEEEEEEEec
Q 007137 111 LTFYAVKLPKALGKGDSYTFDVLAVFA 137 (616)
Q Consensus 111 ~~~y~V~Lp~pl~pg~~vtl~V~~v~t 137 (616)
.....|.+..|+.||.+++|.++-+.+
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~l~~v~N 114 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVVLSPVRN 114 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEEEEeeeC
Confidence 457899999999999999999865543
No 167
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.37 E-value=2.6e+02 Score=29.01 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 499 KLEASLRDLSRT-GDVQACKAARKAADGLLKELSKELKLV 537 (616)
Q Consensus 499 ~~~~~~~~~~~~-~d~~~~~~~~k~~~~~~k~~~~~~~~~ 537 (616)
.|.+.|.+|-+. +-+..+=..|.++=..+.++.++|...
T Consensus 106 ~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kK 145 (234)
T cd07665 106 LLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKK 145 (234)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665443 223233344555555555555555543
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.33 E-value=2.5e+02 Score=35.83 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=13.4
Q ss_pred eee-ee---eEEEEEEEEEEcCCCCCCCcchh
Q 007137 238 SHW-GN---VQVTEHYKLVHGGAQNKGEFSRL 265 (616)
Q Consensus 238 SHW-GN---IavEE~y~L~N~GAkLkG~FSR~ 265 (616)
||| |- |.+..+.++.=+-+.=|-.+=|+
T Consensus 5 s~~~G~v~El~lDG~t~i~GTNG~GKTTlLRl 36 (1201)
T PF12128_consen 5 SHLPGVVAELKLDGHTHICGTNGVGKTTLLRL 36 (1201)
T ss_pred CCCCCceEEEecCCceeeecCCCCcHHHHHHH
Confidence 555 43 24445555554444444455553
No 169
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=39.25 E-value=3.2e+02 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++.++..+.++-..+...++.....|.
T Consensus 184 ~~~~l~~l~~~~~~l~~~~~~~~~~L~ 210 (213)
T cd00176 184 IEEKLEELNERWEELLELAEERQKKLE 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544444443
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.18 E-value=2.2e+02 Score=27.45 Aligned_cols=83 Identities=27% Similarity=0.304 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch--
Q 007137 512 DVQACKAARKAADGLLKELSKELKLV---LSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-- 586 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~---~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-- 586 (616)
+..++....+.+..+++++.++++.+ ++.|.+.|...++...+.++.+--+++.+++ +.+-+|.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL-----------~~l~~~~~~ 141 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL-----------EKLRSGSKP 141 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCCC
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 007137 587 DSENRVAAQQQKITALRQE 605 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~ 605 (616)
--..+++.+.+.....+.+
T Consensus 142 vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred CCHHHHHHHHHHHHHHHHH
No 171
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.51 E-value=5.7e+02 Score=30.06 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHH
Q 007137 497 HDKLEASLRDLS-RTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEE 556 (616)
Q Consensus 497 ~~~~~~~~~~~~-~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e 556 (616)
.+.+-.|++.+. .+.--..|......++.-+-++.....++...+..-+..++-.++|++
T Consensus 244 ~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~ 304 (557)
T COG0497 244 LSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEE 304 (557)
T ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 344444444444 333344555555555555555444444444444443333333444333
No 172
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=38.05 E-value=3.5e+02 Score=30.58 Aligned_cols=12 Identities=8% Similarity=0.338 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 007137 599 ITALRQEVENLL 610 (616)
Q Consensus 599 ~~~~~~~~~~~~ 610 (616)
+.+++++++.++
T Consensus 180 ~~~~~~~~~~~~ 191 (445)
T PRK13428 180 LASLVDRFDSVA 191 (445)
T ss_pred HHHHHHHHHHHh
Confidence 334444444444
No 173
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.96 E-value=2.1e+02 Score=25.29 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhH-hHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHH
Q 007137 517 KAARKAADGLLKELSKELKLVLSFLQSSSAASQILP-KVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQ 595 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~-k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 595 (616)
.........+...+..++..|+..++.- .|-++.. .+.||+.+++++..-+ .+-.. -..+-+.+++..+
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~-~GedL~~Ls~~eL~~LE~~Le~aL-~~VR~--------rK~~~l~~~i~~l 80 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHL-MGEDLESLSLKELQQLEQQLESAL-KRVRS--------RKDQLLMEQIEEL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccccchHHHHHHHHhhhhhH-HHHHH--------HHHHHHHHHHHHH
Confidence 3444556677777888888888776553 2333322 5899999999987765 11111 1123467777888
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 007137 596 QQKITALRQEVENLLELIDE 615 (616)
Q Consensus 596 ~~k~~~~~~~~~~~~~~~~~ 615 (616)
+.|...|.++=..|-.-++|
T Consensus 81 ~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 81 KKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88888888777766655554
No 174
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.78 E-value=3.6e+02 Score=30.90 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHH-----HhHhhHHHHHHHHHHHhccCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 007137 477 DEVQAAIQQVENVIN-----RCLTTHDKLEASLRDLSRTGDVQACKA----ARKAADGLLKELSKELKLVLSFLQSSSAA 547 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~~~~d~~~~~~----~~k~~~~~~k~~~~~~~~~~~~l~~~~~~ 547 (616)
+......++++.++. .-....+.|-++++.+..+-+..+.+. .-+.+-..++.+.++|..++..+..
T Consensus 96 ~~~~~~l~~le~~f~~~~~~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~---- 171 (507)
T PRK07739 96 ETKADALSQMEDIMNEPSDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKS---- 171 (507)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445667778877774 334567788888888888766554322 2233334444444455554444443
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++..-|+++..+=+++-++ .+....+ +. .|. .- ..+..+|++|..|+-.+++
T Consensus 172 -~i~~~V~~iN~ll~~Ia~L--N~~I~~~---~~--~g~---~~-ndLlDqRD~ll~~LS~~v~ 223 (507)
T PRK07739 172 -EIDVTVKEINSLASQISDL--NKQIAKV---EP--NGY---LP-NDLYDQRDLLLDELSKIVN 223 (507)
T ss_pred -HHHHHHHHHHHHHHHHHHH--HHHHHHH---hc--CCC---CC-chhHHHHHHHHHHHHhhcC
Confidence 4677777777777777764 2222221 21 232 11 2355566666666665543
No 175
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=37.74 E-value=2.6e+02 Score=28.78 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 530 LSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 530 ~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
+.++++.-...|+.. +.++|+++..|...+++|+.++
T Consensus 183 ie~~~~~q~~~le~~--a~~lC~~l~~L~~~E~~L~~~I 219 (229)
T PF11101_consen 183 IEQEMEAQAQELEQK--AQALCDSLQQLDQQEQQLQQRI 219 (229)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444443 5556666666666666665543
No 176
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=37.37 E-value=1.7e+02 Score=24.48 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 501 EASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 501 ~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
-+.+...+.++|..++..-++.++...+++.++|.....
T Consensus 14 rE~le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~ 52 (78)
T PF07743_consen 14 REELEEAQNSDDEAELEELKKEIEERIKELIKELAEAFD 52 (78)
T ss_dssp HHHHHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555566578899999999999999999999888873
No 177
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.19 E-value=1.8e+02 Score=27.43 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007137 516 CKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~ 536 (616)
+.++||.+.++...+..++.+
T Consensus 59 l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555444444433
No 178
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=36.86 E-value=4.1e+02 Score=26.17 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=5.4
Q ss_pred hchHHHHHHHHH
Q 007137 474 LQWDEVQAAIQQ 485 (616)
Q Consensus 474 ~~~~~~~~~~~~ 485 (616)
.-|+.+.+++++
T Consensus 51 ~l~~PI~~~l~~ 62 (181)
T PRK13454 51 VALPRIGAVLAE 62 (181)
T ss_pred HHHHHHHHHHHH
Confidence 334445544443
No 179
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.84 E-value=4.5e+02 Score=33.39 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 007137 594 AQQQKITALRQEVENL 609 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~ 609 (616)
....++.++..+++.+
T Consensus 881 ~~~~~~~~l~~~l~~~ 896 (1163)
T COG1196 881 ELEEEKEELEEELREL 896 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 180
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=36.76 E-value=4.1e+02 Score=25.83 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHH
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVE 607 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~ 607 (616)
|-++.-++++..+..-.... ++|+++. .++. +.+++-+++..++++
T Consensus 126 e~~~a~~~l~~~i~~lA~~~---a~kil~~-~l~~--~~~~~li~~~i~~l~ 171 (175)
T PRK14472 126 EKRRALDVLRNEVADLAVKG---AEKIIRT-SLDA--DKQKKVVDSMIQDLS 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHH-HCCH--HHHHHHHHHHHHHhh
Confidence 34444555555553333333 4776543 3333 234444444444443
No 181
>PRK10780 periplasmic chaperone; Provisional
Probab=36.69 E-value=79 Score=30.56 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 007137 524 DGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 524 ~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+.+++.+.+++..+..+++.+
T Consensus 56 q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 56 ASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444443
No 182
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.43 E-value=4e+02 Score=30.76 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHH----HhHhhHHHHHHHHHHHhccCchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 007137 477 DEVQAAIQQVENVIN----RCLTTHDKLEASLRDLSRTGDVQACK----AARKAADGLLKELSKELKLVLSFLQSSSAAS 548 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~~~~~~d~~~~~----~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~ 548 (616)
+......++++.++. .-....+.|-++++.+..+-+..+.. +.-+.+-..++.+.++|..+...+. .
T Consensus 86 ~~~~~~l~~le~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~-----~ 160 (547)
T PRK08147 86 TTRYEQMSKIDNLLSDSTNSLSTTMQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVN-----T 160 (547)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 345556777777774 24455667778888887766554332 1122333444444444444444444 3
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++...|.++..+=+++.++ .+....+ +-.-.|.. - ..+..+|++|..|+-.+++
T Consensus 161 ~i~~~V~~iN~l~~~Ia~L--N~~I~~~---~~~~~g~~-~---ndL~DqRD~ll~eLS~~v~ 214 (547)
T PRK08147 161 AIGSSVDQINNYAKQIASL--NDQITRL---TGVGAGAS-P---NDLLDQRDQLVSELNQIVG 214 (547)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh---hccCCCCC-c---chhHHHHHHHHHHHHhhcC
Confidence 4777888888888888775 3332221 21112331 1 2355666777776666553
No 183
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.39 E-value=5.3e+02 Score=28.44 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
++-...+.+..+++--+.+.+++..+...++
T Consensus 280 ~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~ 310 (444)
T TIGR03017 280 NHPQYKRAQAEINSLKSQLNAEIKKVTSSVG 310 (444)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 184
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=36.34 E-value=3.2e+02 Score=24.47 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHH
Q 007137 484 QQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKD 563 (616)
Q Consensus 484 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~ 563 (616)
.++....+.-....-..+.+++-|=-|||-.-+..=.+. ...+...+..|...++.+ ++-.+.+.+|...=.+
T Consensus 9 ~~v~~~~~~l~~~l~~~e~~~RgYlltgd~~~l~~y~~~----~~~~~~~l~~L~~l~~~~---p~q~~~l~~l~~~~~~ 81 (138)
T PF05227_consen 9 YEVLRAIEQLESALLDQESALRGYLLTGDPEFLEPYQEA----RARLEKALAQLRQLVQDN---PEQQERLDQLEELIDQ 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHcCCHhhhchHHHH----HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Confidence 334444444455556788999999999987654333222 233455566666555554 3334444444444444
Q ss_pred HH
Q 007137 564 LQ 565 (616)
Q Consensus 564 ~~ 565 (616)
..
T Consensus 82 ~~ 83 (138)
T PF05227_consen 82 WR 83 (138)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 185
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=36.24 E-value=2e+02 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=18.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccc
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHST 574 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~ 574 (616)
++-.++.-++..+...+... |++..
T Consensus 110 evk~~Ld~~v~~e~~~r~~~-Q~~l~ 134 (163)
T PF05405_consen 110 EVKRRLDYWVEYEQSVRRRE-QKHLV 134 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 36678888888888888874 65543
No 186
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.22 E-value=6.3e+02 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
..++...++.+.+++.+++..-+.|
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566665555544433
No 187
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=36.06 E-value=5e+02 Score=30.25 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHH
Q 007137 524 DGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQ 565 (616)
Q Consensus 524 ~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~ 565 (616)
-.+.+.+..+|.+++..-..++...++.+-.+++..+.++++
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~ 93 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELE 93 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444332222223334444444444444443
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.86 E-value=2.3e+02 Score=30.65 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=4.6
Q ss_pred CCcEEEEEec
Q 007137 405 GRPVVVLQKT 414 (616)
Q Consensus 405 GRpvVvl~~~ 414 (616)
|-+.+.+...
T Consensus 68 G~~L~~ld~~ 77 (423)
T TIGR01843 68 GQVLVELDAT 77 (423)
T ss_pred CCeEEEEccc
Confidence 4444444433
No 189
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.68 E-value=90 Score=36.37 Aligned_cols=58 Identities=9% Similarity=0.223 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKH 572 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~ 572 (616)
....+++-|+++++|..+++.++.+|+..+-.+ ..++..-=.++.+.+++++|+. ++.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~--q~eL~~Lk~~ieqaq~~~~El~-~~n 151 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQK--QLELSALKGEIEQAQRQLEELR-ETN 151 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--HHHHHHHHhHHHHHHHHHHHHH-hhc
Confidence 345667778888888888888888887777655 5566666677788888888874 443
No 190
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.47 E-value=1.5e+02 Score=33.87 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVA 593 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 593 (616)
.+.+-+-+++-++.|++.+++..++..= ..+.+.-+.|++.+..+-.++ ++...- |+ +..+.+..
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l~~~N------~~l~~eN~~L~~r~~~id~~i-~~av~~----~~----~~~~~~~~ 119 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKLISEN------EALKAENERLQKREQSIDQQI-QQAVQS----ET----QELTKEIE 119 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhHHHHH-HHHHHh----hh----HHHHHHHH
Confidence 3455566666666666666666555432 224444455666555555554 221111 11 12333335
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007137 594 AQQQKITALRQEVENLLELI 613 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~~~~~ 613 (616)
.+++.++++...+++|..-|
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666665544
No 191
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=35.33 E-value=3.6e+02 Score=24.87 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhccccee
Q 007137 497 HDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVV 576 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~ 576 (616)
.++.++.++.+-.-|.... ..+|+.++...+.++.+++......+.. ...-.+++++ ..+..+++.+ .+...
T Consensus 21 ~ek~~k~~~~LVkkGe~~~-ee~k~~~~e~~~~~~e~~~~~~~~~~~~--~~~~~~~le~--~~~~~v~~~L-~~lg~-- 92 (118)
T TIGR01837 21 QEEGSKFFNRLVKEGELAE-KRGQKRFDESVDAAREEVKTALEQTRDQ--VQRNWDKLEK--AFDERVEQAL-NRLNI-- 92 (118)
T ss_pred HHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhhHHHHHH--HHHHHHHHHH-HHcCC--
Confidence 3444555555555555443 4566667766666665555555555432 2223334443 2333444432 22211
Q ss_pred ccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007137 577 DCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 577 ~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
.-..+|..+..++.+|..+++.|-
T Consensus 93 ----------~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 93 ----------PSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 224455666777777777776653
No 192
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.19 E-value=1.8e+02 Score=26.31 Aligned_cols=88 Identities=26% Similarity=0.330 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhH
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRV 592 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 592 (616)
.+.+.+.+..++++.++...-+.+|. .|.. +..+..-|+-+.-. +...|.. ...... -.+++.+|
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~-~l~~---d~~vyk~VG~vlv~-~~~~e~~-~~l~~r---------~e~ie~~i 83 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELE-RLPD---DTPVYKSVGNLLVK-TDKEEAI-QELKEK---------KETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC---cchhHHHhchhhhe-ecHHHHH-HHHHHH---------HHHHHHHH
Confidence 55666677777777777666665543 2332 34444444432211 1111211 111110 01456666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 007137 593 AAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
+.+.++...++.++..+=+.|.+
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776666666666555543
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.09 E-value=1.9e+02 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007137 593 AAQQQKITALRQEVENL 609 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~ 609 (616)
..+.+.+.++.+++++|
T Consensus 101 ~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 194
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.05 E-value=1.3e+02 Score=29.96 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=16.7
Q ss_pred EEEEEEEEEeCCCCCceEEEE
Q 007137 46 RITSTLKVENEGSEPVSEVLL 66 (616)
Q Consensus 46 k~t~~i~vkN~g~~p~~~y~~ 66 (616)
.++++++|.|.|++++...-+
T Consensus 39 ~v~V~~~iyN~G~~~A~dV~l 59 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDVKL 59 (181)
T ss_pred EEEEEEEEEECCCCeEEEEEE
Confidence 678889999999988765544
No 195
>PF15556 Zwint: ZW10 interactor
Probab=35.05 E-value=1.3e+02 Score=30.80 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
..+|+|...-.+-...++.- -+++.++++|-+++-.++++.+
T Consensus 66 eQWKeLKAtYqehVEaIk~a--lt~aL~q~eEaqrK~~qLqeA~ 107 (252)
T PF15556_consen 66 EQWKELKATYQEHVEAIKSA--LTQALPQVEEAQRKRTQLQEAL 107 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776666666667764 6778888999888888888875
No 196
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.84 E-value=3.1e+02 Score=23.98 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCccccchhHhH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELK----LVLSFLQSSSAASQILPKV 554 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~----~~~~~l~~~~~~~~~~~k~ 554 (616)
+...++.+..-.+.....-..+++....++. .+..++..+.+.+..+-+.|. .++.+|... -.++.
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~-----~~~~~ 74 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEE-----NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ-----KENKL 74 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 4445555555555555555555555555553 345555555555555555444 333333332 33444
Q ss_pred HHHHHHHHHHHHHHHhcccceecccccccc
Q 007137 555 EELVAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 555 ~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
..|...-..+...+ .+....++..|+.+.
T Consensus 75 ~~l~~q~~~l~~~l-~~l~~~~~~~e~~l~ 103 (127)
T smart00502 75 KVLEQQLESLTQKQ-EKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444444444443 333333344455543
No 197
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=34.77 E-value=1.1e+02 Score=32.34 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 007137 594 AQQQKITALRQEVENL 609 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~ 609 (616)
.++++...+.++|++|
T Consensus 281 ~~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDL 296 (297)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4677788888888775
No 198
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=34.75 E-value=5.2e+02 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 588 SENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
|++|...-.++..+++++++.+..
T Consensus 166 i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334434444555555555555443
No 199
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.71 E-value=3.8e+02 Score=27.37 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=46.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG------DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~------d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.|| ..+..+++++..++..|..+=+.|-..|+++.+.. +...|..+=..+..+-..+.+.-..|..+|++
T Consensus 12 ~Rl--~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~l~~ 87 (228)
T cd07650 12 IRL--SQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQRIET 87 (228)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 36788899999999999999999999999998754 22334344444444444344444444444443
No 200
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.59 E-value=2.4e+02 Score=27.32 Aligned_cols=43 Identities=30% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHH
Q 007137 517 KAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEK 562 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~ 562 (616)
++.++.+.+++++.+++|+.|...-+. ..++-.++.+++..-+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d---~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKD---NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHH
Confidence 455556666666666666655553222 3444445555554333
No 201
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.51 E-value=68 Score=32.25 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=42.9
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch-hhhhhHHHHHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-DSENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
-.++++-.-++.++.++.+. -+++.+..+..|+.-.|+ +-|++-..+.+|++.|+..++++
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~-~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~l 135 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATG-SQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESL 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888886 488888887778877777 45665236677777776655554
No 202
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.36 E-value=6.2e+02 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 588 SENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
|.+-++.+..++.+++.+|.+|=+
T Consensus 690 I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 690 IKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666665543
No 203
>PRK09039 hypothetical protein; Validated
Probab=34.32 E-value=3.9e+02 Score=29.13 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
.++++++-..++++-++...+|.++..+|..- +++|+.||.++..+....
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a-----~~~~~~~l~~~~~~~~~~ 202 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVA-----LAQRVQELNRYRSEFFGR 202 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHH
Confidence 45555555555556666666666666666553 678899999999888443
No 204
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.88 E-value=1.1e+02 Score=34.28 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=18.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 586 RDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 586 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+.+.++|+.+.++..++.++++.++-.|
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566777777777777777776554
No 205
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=33.77 E-value=2.9e+02 Score=23.98 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred ceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCC-ceEEEEEeCCccccceeEEEEeeCC
Q 007137 28 DLILSKVDRRIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHE 85 (616)
Q Consensus 28 ~~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p-~~~y~~~lp~~~~~~ls~i~a~~~~ 85 (616)
.+..+.+.=+.-+.+.....++.++..|..+.| ...|+|.|+++ ..++-|.|.+++
T Consensus 11 ~LpL~~~~v~a~v~G~~~~~ta~lty~N~~~~plEg~f~fPL~e~--~~V~gfea~i~g 67 (78)
T PF13757_consen 11 PLPLQSSRVTACVNGYSAGTTASLTYENPEDRPLEGVFVFPLDEG--ATVVGFEADIGG 67 (78)
T ss_pred cceEEEeEEEEEEEcccccEEEEEEEECCCCCcEEEEEEEecCCC--cEEEEEEEEeCC
Confidence 344555555566677789999999999999988 46677777665 567888887753
No 206
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.72 E-value=4.3e+02 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccc
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGI 585 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 585 (616)
|-.+.-++++..+..-.... ++|+++.
T Consensus 113 e~~~a~~~l~~ei~~lA~~~---a~kil~~ 139 (159)
T PRK13461 113 EKEKAEYEIKNQAVDLAVLL---SSKALEE 139 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 33444455555542222232 4666443
No 207
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.53 E-value=4.6e+02 Score=34.48 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=25.3
Q ss_pred EEEEeeeeeeEEEEEEEEEEcCCCCCCCcchhhhccCCCcCcc-cceeEeeecCCCCccCeeEE
Q 007137 234 EIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGA-SAFKYLIAKMPPRVHSVYYR 296 (616)
Q Consensus 234 ~IEVSHWGNIavEE~y~L~N~GAkLkG~FSR~dyq~~~~~~~~-~a~~~l~~~LP~~A~dvYYr 296 (616)
.|-+-+|+.+. .+.|++.+.=--|- +.+..|. ..+..+...|.+....+.|.
T Consensus 9 ~l~l~N~~~~~-~~~~~f~~~~~~l~----------G~NGaGKSTll~ai~~~l~~~~~~~~f~ 61 (1486)
T PRK04863 9 SLTLVNWNGFF-ARTFDLDELVTTLS----------GGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (1486)
T ss_pred EEEEecccCcc-ceEEEecCCeEEEE----------CCCCCCHHHHHHHHHccccCCCCeEEEC
Confidence 34566787665 34666665111111 2233343 33555666665555545544
No 208
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.44 E-value=4.6e+02 Score=25.46 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 007137 557 LVAKEKDLQEKV 568 (616)
Q Consensus 557 ~~~~~~~~~~~~ 568 (616)
-++.-++++..+
T Consensus 125 ~~~a~~el~~ei 136 (173)
T PRK13460 125 KGKALSQLQNQI 136 (173)
T ss_pred HHHHHHHHHHHH
Confidence 334445555554
No 209
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.39 E-value=4.6e+02 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=10.5
Q ss_pred EeCchhhhhhhHHHHHHH
Q 007137 429 KFSKLSMLREPFMLIFGF 446 (616)
Q Consensus 429 ~~~~~~~l~kPL~i~~~~ 446 (616)
+.++..+|.+-...++.=
T Consensus 157 ~L~pi~LL~eTekAig~~ 174 (1072)
T KOG0979|consen 157 RLSPIELLVETEKAIGAE 174 (1072)
T ss_pred cCChHHHHHHHHHhcCch
Confidence 345666666666655543
No 210
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.30 E-value=4.4e+02 Score=25.22 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhcccceecccccccc
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
|-.+.-++++..+..-.... ++|+++
T Consensus 116 ek~~a~~~l~~~i~~la~~~---a~kil~ 141 (164)
T PRK14471 116 EKNAAMAEIKNQVANLSVEI---AEKVLR 141 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33444455555542222222 466653
No 211
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=33.25 E-value=5.5e+02 Score=26.35 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 007137 497 HDKLEASLRDLS 508 (616)
Q Consensus 497 ~~~~~~~~~~~~ 508 (616)
+..+.++++++.
T Consensus 36 ~~~i~e~i~~Le 47 (247)
T PF06705_consen 36 FQDIKEQIQKLE 47 (247)
T ss_pred HHHHHHHHHHHH
Confidence 334444555444
No 212
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.24 E-value=2.9e+02 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
+++..+.++|.++...+.. +.+.|..|.+.++..+-+|
T Consensus 27 ~E~~~l~~EL~evk~~v~~------~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSE------VIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544443 5566666666666666665
No 213
>PLN02678 seryl-tRNA synthetase
Probab=33.23 E-value=1.2e+02 Score=34.45 Aligned_cols=26 Identities=8% Similarity=0.291 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+..+|+.+..+++++.++++.++-.|
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666677777777666554
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.19 E-value=2.3e+02 Score=29.53 Aligned_cols=42 Identities=38% Similarity=0.395 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
++.|+.-.++++.+..++.+ ..++.+.++|++..=.+++|++
T Consensus 131 ~d~ke~~ee~kekl~E~~~E--keeL~~eleele~e~ee~~erl 172 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKE--KEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655666655 6666777777776666666665
No 215
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.02 E-value=4.1e+02 Score=26.44 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhH
Q 007137 476 WDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQ-ACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKV 554 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~-~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~ 554 (616)
..+-...++-+..++++|...+..++.+...+.+.++-- .+..+.+.-......+..++..+..+... ..+-.+.+
T Consensus 113 L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~---~~~~~~~i 189 (236)
T PF09325_consen 113 LREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQ---AKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccceeccccccccch-----hhhhhHHHHHHHHHHHHH
Q 007137 555 EELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-----DSENRVAAQQQKITALRQ 604 (616)
Q Consensus 555 ~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~k~~~~~~ 604 (616)
++..+.|-+..+. ||..--+ |++..|..+++-++.-..
T Consensus 190 s~~~k~E~~rf~~------------~k~~d~k~~l~~~~~~~i~~~~~~~~~We~ 232 (236)
T PF09325_consen 190 SENIKKELERFEK------------EKVKDFKSMLEEYAESQIEYQKKMLEAWET 232 (236)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 216
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=32.83 E-value=2.1e+02 Score=25.81 Aligned_cols=80 Identities=16% Similarity=0.332 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCC----CCCcceEEEEEcCCCCCC
Q 007137 49 STLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNG----MPAALTFYAVKLPKALGK 124 (616)
Q Consensus 49 ~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~----~~~~~~~y~V~Lp~pl~p 124 (616)
.-.+|.|.|+++.. +..+....+.+.-.-.....++.-+-... ..+.+. ..+ .+.+.+.-...+..|+.+
T Consensus 18 ~y~ti~N~g~~~~~--L~~v~s~~a~~v~lh~~~~~~g~~~m~~v-~~i~ip---a~~~v~l~pgg~HlmL~g~~~~l~~ 91 (110)
T PF04314_consen 18 AYFTITNNGDQDDR--LVGVSSPAAARVELHETVMEDGVMKMRPV-DSIPIP---AGSTVELKPGGYHLMLMGLKRPLKP 91 (110)
T ss_dssp EEEEEE-CSSSEEE--EEEEE-TTCCEEEEEEECCCCCEEEECCS-S-EEEE---TT-EEEE-CCCCEEEEECESS-B-T
T ss_pred EEEEEEeCCCCCeE--EEEEEcCCCceEEEEEEEccCCeEEEEEC-CCEEEC---CCCeEEecCCCEEEEEeCCcccCCC
Confidence 44788898876654 66666666666555443332221111000 011111 111 234455666677889999
Q ss_pred CCeEEEEEEE
Q 007137 125 GDSYTFDVLA 134 (616)
Q Consensus 125 g~~vtl~V~~ 134 (616)
|+++.+++.+
T Consensus 92 G~~v~ltL~f 101 (110)
T PF04314_consen 92 GDTVPLTLTF 101 (110)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9998888754
No 217
>PF13166 AAA_13: AAA domain
Probab=32.80 E-value=4e+02 Score=31.43 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhh
Q 007137 601 ALRQEVENLLELI 613 (616)
Q Consensus 601 ~~~~~~~~~~~~~ 613 (616)
..+.+|+..|..+
T Consensus 459 ~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 459 PAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444443
No 218
>PRK09793 methyl-accepting protein IV; Provisional
Probab=32.80 E-value=7.9e+02 Score=28.01 Aligned_cols=23 Identities=9% Similarity=0.015 Sum_probs=10.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhh
Q 007137 434 SMLREPFMLIFGFFSLFVAGIVY 456 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl~~i~~ 456 (616)
.+-.+-++++++++++++++.++
T Consensus 6 sI~~rL~~~~~l~~ll~l~~~~~ 28 (533)
T PRK09793 6 RISTTLFLILILCGILQIGSNGM 28 (533)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 219
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.65 E-value=92 Score=32.23 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHHhHhhHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 488 NVINRCLTTHDK---LEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 488 ~~~~~r~~~~~~---~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
..+.||..+|++ +++||.|||+--.. --.+..+..-...|...|++--.+||.+
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~---dPs~~ear~~i~rl~~~i~ernEkmKee 225 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES---DPSRREAREAIARLPPKINERNEKMKEE 225 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CcchHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445789999965 58999999874222 1222233333344666666666777764
No 220
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=32.54 E-value=4.9e+02 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRD 506 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 506 (616)
+++.-++.....-..-...-..+++.+.+
T Consensus 62 ~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 62 GIRSELEEARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444333333444444443
No 221
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.07 E-value=6.5e+02 Score=29.49 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhcc--CchHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHh
Q 007137 496 THDKLEASLRDLSRT--GDVQACKAARKAADGL---LKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMA 570 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~--~d~~~~~~~~k~~~~~---~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~ 570 (616)
-.+.+.+.++.++.. ++...++.+++.++.- .++.-++++.+...|+.+ -.++...+.+|.+.=++=-.++..
T Consensus 192 ~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~--~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 192 DLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQND--KKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhccHhHHHHHHH
Confidence 456777888888877 7777777887777643 333333455555566654 455555566665555444444433
Q ss_pred c
Q 007137 571 K 571 (616)
Q Consensus 571 ~ 571 (616)
.
T Consensus 270 ~ 270 (555)
T TIGR03545 270 K 270 (555)
T ss_pred H
Confidence 3
No 222
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=31.79 E-value=2e+02 Score=26.25 Aligned_cols=74 Identities=9% Similarity=0.169 Sum_probs=55.2
Q ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhccCccccchhHhHHHHHHHHHH
Q 007137 494 LTTHDKLEASLRDLSRTGDVQACKAARKAADGLLK----------ELSKELKLVLSFLQSSSAASQILPKVEELVAKEKD 563 (616)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k----------~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~ 563 (616)
..+|+.|-++|.++--.-|..+++-+--..-.++| .+.++++-|+..|+.+..++.+.+.++-+.---.+
T Consensus 16 vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G~pAF~s~~QQ~~mlq~~l~k~~~~t~L~E~L~GVlV~~~N 95 (120)
T PRK15321 16 VDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQNMLAKVEPGTHLYEALNGVLVGTMN 95 (120)
T ss_pred chHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHhhhHHhhcc
Confidence 45789999999999888888887765555555555 46689999999999887788888888776654444
Q ss_pred HHHH
Q 007137 564 LQEK 567 (616)
Q Consensus 564 ~~~~ 567 (616)
+|-.
T Consensus 96 ~Q~Q 99 (120)
T PRK15321 96 AQSQ 99 (120)
T ss_pred HHHH
Confidence 4443
No 223
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=31.67 E-value=3.7e+02 Score=25.52 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred eeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 459 VDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVL 538 (616)
Q Consensus 459 lD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~ 538 (616)
++.....|+.. .-|+.-.-+-.++-..+++++.|. ++|.. |=+++.+.-|.+|.+.-.+.+.+.+-+
T Consensus 10 l~~~~~rd~~~-leklds~~~l~Lc~R~Q~HL~~cA-------~~Va~-----~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 10 LNLPDSRDPEV-LEKLDSRPVLRLCSRYQEHLNQCA-------EAVAF-----DQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred cCCCCCCChHH-HHccChHHHHHHHHHHHHHHHHHH-------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccc
Q 007137 539 SFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKK 582 (616)
Q Consensus 539 ~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~ 582 (616)
.++.. .++...||+||..-=...+..+ .+....+ |++
T Consensus 77 k~~~k---~ae~L~kv~els~~L~~~~~lL-~~~v~~i---e~L 113 (131)
T PF10158_consen 77 KRFAK---FAEQLEKVNELSQQLSRCQSLL-NQTVPSI---ETL 113 (131)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHH
No 224
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.61 E-value=4.8e+02 Score=28.75 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=11.4
Q ss_pred cchhHhHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~ 567 (616)
+.+.+++..|..+..+..+.
T Consensus 315 P~lv~RL~tL~~lH~~a~~~ 334 (388)
T PF04912_consen 315 PSLVERLKTLKSLHEEAAEF 334 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555553
No 225
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.50 E-value=3.6e+02 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhh
Q 007137 600 TALRQEVENLLELID 614 (616)
Q Consensus 600 ~~~~~~~~~~~~~~~ 614 (616)
.++..+|++|-.-|+
T Consensus 515 r~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 515 RELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544443
No 226
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.36 E-value=2.3e+02 Score=31.85 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 007137 523 ADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 523 ~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+..++.++..+++.+..+...+
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~ 273 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDK 273 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 3344555555555555555543
No 227
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.09 E-value=7.7e+02 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 007137 521 KAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 521 k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+.++.+.+.+.+....+...+...
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~ 370 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQ 370 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555555666666666666554
No 228
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.90 E-value=5.8e+02 Score=25.93 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchh
Q 007137 475 QWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG---DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQIL 551 (616)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~ 551 (616)
.|.+.-........+..-|+. .| +-+.+|..+. --..+.+..+.++.+++++.++|.++-..=|.. -.++.
T Consensus 101 ~w~~al~na~a~lehq~~R~~---NL-eLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~--Q~~~~ 174 (221)
T PF05700_consen 101 AWKEALDNAYAQLEHQRLRLE---NL-ELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRR--QEEAG 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhH
Confidence 466665555555555555542 22 1233333220 113344445555555555555555554433332 22222
Q ss_pred HhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHH
Q 007137 552 PKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQE 605 (616)
Q Consensus 552 ~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~ 605 (616)
.+|..+++..++.+....-.. ++-..++++|...+++..++.++
T Consensus 175 ---~~L~~Le~~W~~~v~kn~eie-------~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 175 ---EELRYLEQRWKELVSKNLEIE-------VACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 234455555555542222221 12223455555555555555443
No 229
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=30.86 E-value=3.1e+02 Score=32.32 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH-HHHHHHHHHHHHhcccceeccccccccch
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL-VAKEKDLQEKVMAKHSTVVDCYEKKTGIR 586 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (616)
..+-.+|-.+++.=..+-.+.|..|.++|... =..|+.-++|| +++|+--- -.+| +|++.||
T Consensus 268 ~~t~~~Al~KiQ~VVN~q~~aL~~L~~qL~nn--F~AISssI~dIy~RLd~leA-------daQV---DRLItGR 330 (610)
T PF01601_consen 268 FTTTASALNKIQDVVNQQGQALNQLTSQLSNN--FGAISSSIQDIYNRLDQLEA-------DAQV---DRLITGR 330 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHH-------H-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHhh-------cccc---cccccch
Confidence 33334444444444444444444444444443 22244444442 23332111 1233 7888888
No 230
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.74 E-value=2.1e+02 Score=29.50 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 561 EKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
-+.+.+++ .-....+..+|..- ++. .+. .-.++=...+++=++.++..
T Consensus 185 ~~~l~~~v-~~sti~i~l~~~~~-~~~-~~~-~~~~~~~~al~~~~~~~~~~ 232 (262)
T PF14257_consen 185 LKYLDDRV-DYSTITISLYEPES-IKP-ESP-SFGSRFRDALKNGWNALVSF 232 (262)
T ss_pred HHHHHHhh-ceEEEEEEEEecCC-CCC-CCC-CcchHHHHHHHHHHHHHHHH
Confidence 33455554 44444555555521 111 222 22233345566656655554
No 231
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.55 E-value=5.6e+02 Score=30.54 Aligned_cols=119 Identities=10% Similarity=0.128 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHH----HhHhhHHHHHHHHHHHhccCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 007137 478 EVQAAIQQVENVIN----RCLTTHDKLEASLRDLSRTGDVQAC----KAARKAADGLLKELSKELKLVLSFLQSSSAASQ 549 (616)
Q Consensus 478 ~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~~~~~~d~~~~----~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~ 549 (616)
.....++++..++. .-....+.|-++++.+...-+..+. -+.-+.+-..++.+.++|.++...+. .+
T Consensus 87 ~~~~~l~~le~l~~~~~~gls~~L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n-----~~ 161 (651)
T PRK06945 87 TYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVN-----TQ 161 (651)
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 45566777777775 2334466777788887776654322 22223333444444444444444444 34
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 550 ILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 550 ~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
+...|+++..+=+++.++ .+....+ | ...|.. - ..+..+|++|..|+..+++
T Consensus 162 I~~~V~~IN~l~~qIA~L--N~~I~~~---~-~~~g~~-~---ndLlDqRD~ll~eLS~~v~ 213 (651)
T PRK06945 162 LTSSVTQINSYTKQIAQL--NDQIAKA---E-SSQGQP-P---NDLLDQRDQLVSELSKLVG 213 (651)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHh---h-ccCCCC-c---chhHHHHHHHHHHHHhhcC
Confidence 777788888877777774 2222221 2 123331 1 2356667777777766654
No 232
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=30.06 E-value=3.8e+02 Score=25.32 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch--
Q 007137 509 RTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-- 586 (616)
Q Consensus 509 ~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-- 586 (616)
+..|.+++-+.-++||+++..|.++=...-.+.+.. ...+...|.++.++-.++-|++ +++-.-+
T Consensus 18 aA~~~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~--ae~a~~~L~~~~~~~~~i~e~~-----------~kl~~~~~~ 84 (126)
T PF09403_consen 18 AATATASVESELNQLEAEYQQLEQKEEARYNEEKQE--AEAAEAELAELKELYAEIEEKI-----------EKLKQDSKV 84 (126)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHGGG
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH-----------HHHHHhcch
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 587 -DSENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 587 -~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
+-.++-+.+-+|.+++..++|.=+.--.+|
T Consensus 85 r~yk~eYk~llk~y~~~~~~L~k~I~~~e~i 115 (126)
T PF09403_consen 85 RWYKDEYKELLKKYKDLLNKLDKEIAEQEQI 115 (126)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 233
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=30.03 E-value=5.7e+02 Score=29.77 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 521 KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 521 k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
..+..+..+..+++..+..+|+. ...+.+-++.|++.+..+++
T Consensus 72 ~~i~~~l~~a~~e~~~L~~eL~~---~~~~l~~L~~L~~i~~~l~~ 114 (593)
T PF06248_consen 72 NEIQPQLRDAAEELQELKRELEE---NEQLLEVLEQLQEIDELLEE 114 (593)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776 44555556666666666654
No 234
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.01 E-value=6.3e+02 Score=26.01 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=39.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHH
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG----DVQACKAARKAADGLLKELS 531 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----d~~~~~~~~k~~~~~~k~~~ 531 (616)
.||+ ....+++.+...+..|..+=+.+-..|.++.+.- ...+|..+=..+-.+...+.
T Consensus 12 ~r~k--~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a 73 (261)
T cd07648 12 HNMK--HGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLS 73 (261)
T ss_pred HHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHH
Confidence 5663 5667799999999999999999999998887643 23455554444444433333
No 235
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=29.93 E-value=3.6e+02 Score=32.39 Aligned_cols=122 Identities=10% Similarity=0.136 Sum_probs=69.4
Q ss_pred hhhhhhHHHHHHHHHHHH--HHHhheeeeeEEec--------------CchHHHhhhchHHHHHHHHHH----HHHHHHh
Q 007137 434 SMLREPFMLIFGFFSLFV--AGIVYMHVDMSISK--------------SSAAYLARLQWDEVQAAIQQV----ENVINRC 493 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl--~~i~~~rlD~sI~k--------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~r 493 (616)
..++.+++++++++..++ .-..+.+.||.+.+ ..+.|+-|. ++..-++.+ ..+-+.+
T Consensus 17 ~~l~~~~~l~~~vv~y~~v~~~~~~~~~~l~~g~Va~~~I~sP~si~d~~~Tee~~k---~~~~sv~~~y~~~~e~t~~~ 93 (700)
T COG1480 17 KYLHVLVLLWAAVVSYTLVLGSVLPNQPDLKLGDVAEQTIYSPGSIEDEKATEEERK---AASDSVEPVYKRDAEITQNI 93 (700)
T ss_pred chhHHHHHHHHHHHHHHHHhhccccccccchhcccccccccCCceechhhhhHHHHH---HHHhccchhhhhhHHHHHHH
Confidence 345666665555554433 44567888886642 222322111 111112222 4455778
Q ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-cchh-HhHHHHHHHHHHHHHH
Q 007137 494 LTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAA-SQIL-PKVEELVAKEKDLQEK 567 (616)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~-~~~~-~k~~e~~~~~~~~~~~ 567 (616)
...|+.+=+++++.|++.+-+.-+.+.+.++ .++.++++|..+- + .+++ ++..-+.++|.+.-..
T Consensus 94 v~~~~~~~~~i~~vk~~~e~~~~~~~e~~~~--------~v~~~~~~l~~~~-n~~~~s~~~i~~lLe~~~~~~~~ 160 (700)
T COG1480 94 VQLYQNFFDAINEVKRSLEENEDENTEYSLK--------QVKQLKDRLLRDT-NTVDISEERILTLLELDSEDLNL 160 (700)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHH--------HHHHHHHHHhhhc-cchhcchHHHHHHHhCChhhhhh
Confidence 8889999999999999888888877777776 2566666655541 2 1222 3444455555554443
No 236
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.76 E-value=1.4e+02 Score=25.09 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=35.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 550 ILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 550 ~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
+.+||..|...-.++++- .......+ ..-...+ +.+..|.+.++++|+.++.-|.
T Consensus 5 Le~kle~Li~~~~~L~~E-N~~Lr~q~--------~~~~~ER-~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSE-NRLLRAQE--------KTWREER-AQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777776666653 12211111 1123455 8999999999999999998775
No 237
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=29.64 E-value=4.2e+02 Score=31.03 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHh-----HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccc
Q 007137 476 WDEVQAAIQQVENVINRC-----LTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AAS 548 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~ 548 (616)
|+-....+.++.+++..- ...-+.|=++++.|..+-+.. ++|+.+-+.-+.+.+.++.+-..|+.-. -..
T Consensus 87 ~~t~~~~L~~le~ll~~~~~~sl~~~L~~ff~s~q~la~~P~~~---a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~ 163 (552)
T COG1256 87 LDTRASQLSQLESLLSEPSESSLSTLLNDFFNSLQELASNPSDT---AARQAVLSKAQTLVNQINNTYEQLTDLRKDINA 163 (552)
T ss_pred HHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 556777788888777433 344566677778877776665 4556665555556655555544443310 134
Q ss_pred chhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007137 549 QILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 549 ~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
++..-|.+|..+=+++.++ .+....+ ...|... ..+-.+|++|..|+.+++
T Consensus 164 ~I~~~V~~vNsLl~qIa~l--N~qI~~~-----~~~g~~~----NdLlDqRD~Lv~eLs~~i 214 (552)
T COG1256 164 EIAATVDEVNSLLKQIADL--NKQIRKV-----KAAGNDP----NDLLDQRDQLVDELSQLI 214 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-----ccCCCCc----hhHHHHHHHHHHHHHhhc
Confidence 5777777777777777764 3333321 3345432 223455677777776664
No 238
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=29.55 E-value=3.3e+02 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRT 510 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 510 (616)
.-...++++..++.+|..+-+++-..|.++.+.
T Consensus 20 ~~~~~~~~l~~~~keRa~lE~~Yak~L~kl~~~ 52 (91)
T PF00611_consen 20 QGIKLLEELASFFKERASLEEEYAKSLQKLAKK 52 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999999887653
No 239
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.45 E-value=5e+02 Score=25.30 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=57.9
Q ss_pred CceeEEEEEEeCchhhhhhhHHHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHH-hHhhHH
Q 007137 420 HNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINR-CLTTHD 498 (616)
Q Consensus 420 h~~~~~V~Y~~~~~~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~ 498 (616)
-...+.++|++|+...-. +.++ ..+..|+...+-+..=+..+.+ =...-.
T Consensus 55 ~~v~l~itytlPr~~~~~---------------------------~~~~--~~~~~W~~~~a~l~~HE~~H~~ia~~~a~ 105 (161)
T PF06037_consen 55 AKVKLDITYTLPRWSRRA---------------------------KAPP--ELRQRWDRFSAGLRRHEEVHGRIAREMAR 105 (161)
T ss_pred eeEEEEEEEECCCccccC---------------------------CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999875222 1222 2556787766655544443322 223345
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 499 KLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
.+++++..+ .+-..|...+..++....++.++..+-|...-
T Consensus 106 ~ie~~l~~L---~~~~~C~~l~~~~~~~~~~~l~~~~~~q~~fD 146 (161)
T PF06037_consen 106 EIEKALKGL---PPDPDCQKLRAEANRRTDAILARHRQRQRDFD 146 (161)
T ss_pred HHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777776 77778988888888877777777766665544
No 240
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.31 E-value=8.4e+02 Score=30.80 Aligned_cols=31 Identities=32% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+.++++.|.......-+.++|+....++++-
T Consensus 409 ~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~ 439 (1174)
T KOG0933|consen 409 SEASTEIKQAKLKLEHLRKELKLREGELATA 439 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 3555566666666666666777666666663
No 241
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=29.22 E-value=7.8e+02 Score=30.56 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=11.8
Q ss_pred eeeEEEEEEEEEEcCCCCCCCc
Q 007137 241 GNVQVTEHYKLVHGGAQNKGEF 262 (616)
Q Consensus 241 GNIavEE~y~L~N~GAkLkG~F 262 (616)
|++.++|+.-++-.| -++.+|
T Consensus 128 Gtle~s~~~l~~av~-D~n~~f 148 (980)
T KOG0980|consen 128 GTLEYSDYQLLTAVD-DLNNGF 148 (980)
T ss_pred CCccccHHHHHHHhc-cHHHHH
Confidence 666666655555444 555554
No 242
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=29.09 E-value=6.5e+02 Score=28.22 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGD-VQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d-~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+....++|+++....--..|+.+..+-+.+..-+. ..+|+.+-|-++.+.+..++-+++-..+.+.+
T Consensus 140 ~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~e 207 (464)
T KOG4637|consen 140 KLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRRE 207 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556667666654444455555555444443333 56888888888888888777777777666665
No 243
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.04 E-value=4.5e+02 Score=26.76 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=54.5
Q ss_pred eeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 457 MHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 457 ~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
.--|||-.++..+|+.||+ .+.+.+-+++..+- ++..+- ...+-....-.|+.+|+-++--.+++.+
T Consensus 84 ~gTdfS~~~~~dwEevrLk-rELa~Le~~l~~~~-----------~~~~~~-~~~~~~~~~lvk~e~EqLL~YK~~ql~~ 150 (195)
T PF12761_consen 84 KGTDFSATEGTDWEEVRLK-RELAELEEKLSKVE-----------QAAESR-RSDTDSKPALVKREFEQLLDYKERQLRE 150 (195)
T ss_pred CCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHH-----------HHHHhc-ccCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3568998889999988874 23333333332221 111111 3444455666788888888887778877
Q ss_pred HHHHhccCccccchhHhHHHHHHHHHHHHH
Q 007137 537 VLSFLQSSSAASQILPKVEELVAKEKDLQE 566 (616)
Q Consensus 537 ~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~ 566 (616)
+.+ ...+.+.++..-=++|...+.|+.-
T Consensus 151 ~~~--~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 151 LEE--GRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred hhc--cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 765 2222255555545555555555544
No 244
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.98 E-value=4.5e+02 Score=27.38 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhcc---CchHHHHHHHHHHHH---HHHHHHHHH
Q 007137 483 IQQVENVINRCLTTHDKLEASLRDLSRT---GDVQACKAARKAADG---LLKELSKEL 534 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~d~~~~~~~~k~~~~---~~k~~~~~~ 534 (616)
-|.+.+-+.+.+.--+.+-+.+...-++ ||-+.+..+||.||. .+|...++.
T Consensus 40 KEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEkes 97 (233)
T PF04065_consen 40 KEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKES 97 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555666666676666555 455789999999997 455554443
No 245
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.68 E-value=4.3e+02 Score=31.38 Aligned_cols=29 Identities=3% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhccC
Q 007137 483 IQQVENVINRCLTTHDKLEASLRDLSRTG 511 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 511 (616)
++.+..++..|+.+=+.+-.+++++.++.
T Consensus 8 ~~~l~~F~~eRa~iE~~y~k~~~~l~~k~ 36 (611)
T KOG2398|consen 8 TKELADFVRERASIEEDYAKRMGKLAAKA 36 (611)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 33444444444444444444444444433
No 246
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=28.52 E-value=8.5e+02 Score=27.54 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhccc------------ceeccccc-----------
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHS------------TVVDCYEK----------- 581 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~------------~~~~~~e~----------- 581 (616)
...+.+++.|+.+.++.+. +.|-+++|..-|..+.|+++..-. -.. -.+
T Consensus 220 ~~lr~~k~~Lt~l~~rvqk------vRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~--~~~~~r~~~~~~~s 291 (414)
T KOG2662|consen 220 ERLRILKKRLTELTSRVQK------VRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTI--KAGISRAKSNRASS 291 (414)
T ss_pred HHHHHHhHHHHHHHHHHHH------HHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccc--cCCccchhhcccch
Confidence 4566677788888888776 788888998888888888755441 000 011
Q ss_pred cccch----hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 582 KTGIR----DSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 582 ~~~~~----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
.+.|+ ++|.-+.+.-..++++.+|+++|.+++|+
T Consensus 292 ~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~Idd 329 (414)
T KOG2662|consen 292 TVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDD 329 (414)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12233 46666677777888888888888888874
No 247
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.51 E-value=5.9e+02 Score=25.19 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHH-----HHHHHHHHHHH
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACK-----AARKAADGLLK 528 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~-----~~~k~~~~~~k 528 (616)
.-+.|.|+.+++.=.+--..|+++-.++.||- +||. .-||.-+.+..
T Consensus 13 lLLAEtVLrhIReG~TQL~AFeEvg~~L~RTs--AACGFRWNs~VRkqY~~~i~ 64 (161)
T TIGR02894 13 LLLAETVLRHIREGSTQLSAFEEVGRALNRTA--AACGFRWNAYVRKQYEEAIE 64 (161)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcccH--HHhcchHHHHHHHHHHHHHH
Confidence 34578889999887788889999999987764 5552 34555555433
No 248
>COG5293 Predicted ATPase [General function prediction only]
Probab=28.48 E-value=3.4e+02 Score=31.19 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=50.6
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 484 QQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 484 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+||..-+++....|+.+.+.=++|=+++ +...+++-|+++.+..+++++.++.++.||+.
T Consensus 316 g~Vkk~~e~v~~F~r~~~e~R~~yl~~e-i~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~ 375 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITEERHDYLQEE-IAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR 375 (591)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667778888888888888887664 77888999999999999999999999999985
No 249
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=28.36 E-value=4e+02 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 007137 499 KLEASLRDLSRTGDVQACKAARKAADGLL 527 (616)
Q Consensus 499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~~~ 527 (616)
+=|+.|... ++|+..+-.||+.|-...
T Consensus 82 ~sE~~V~~i--t~dIk~LD~AKrNLT~SI 108 (383)
T PF04100_consen 82 ESEQMVQEI--TRDIKQLDNAKRNLTQSI 108 (383)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 445555443 677777777777766543
No 250
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=28.36 E-value=7.6e+02 Score=29.51 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHH----hHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--cccch
Q 007137 477 DEVQAAIQQVENVINR----CLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AASQI 550 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~~~ 550 (616)
+.....++++..++.. -....+.|-++++++...-+..+ +|..+-++-+.|.+.++.+-.+|..-. ...++
T Consensus 85 ~~~~~~l~~i~~ll~~~~~gls~~l~~ff~a~q~la~~P~~~~---~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I 161 (649)
T PRK12715 85 DAFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQLNSTPDNIA---TRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQV 161 (649)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677776642 23445677778888877665543 344444444444444444444433310 13458
Q ss_pred hHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 551 LPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 551 ~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
...|.++..+-+++.++ .++ .. +|. .- ..+..+|++|..|+-.+++
T Consensus 162 ~~~V~~iN~l~~qIA~L-N~q-I~---------~~~---~~-ndLlDqRD~ll~eLS~~v~ 207 (649)
T PRK12715 162 TESVKIINRITKELAEV-NGK-LL---------GNN---NI-PELLDHRDELLKQLSGYTD 207 (649)
T ss_pred HHHHHHHHHHHHHHHHH-HHH-Hh---------cCC---Cc-hHhHHHHHHHHHHHHhhcC
Confidence 88888888888888875 232 11 221 11 2466777777777776654
No 251
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.21 E-value=5.8e+02 Score=25.00 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 007137 556 ELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 556 e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
|-.+..++++..+..-.... ++|.++.. ++.+ .+++=+++..+++.++
T Consensus 132 Ek~~a~~~l~~ei~~lav~~---A~kil~~~-ld~~--~~~~lid~~i~~l~~~ 179 (184)
T CHL00019 132 EQQRAINQVRQQVFQLALQR---ALGTLNSC-LNNE--LHLRTINANIGLLGAM 179 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhH-cCHH--HHHHHHHHHHHHHHhc
Confidence 44444555555542222222 46655433 3322 3444445555555443
No 252
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=28.21 E-value=6.5e+02 Score=29.78 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHH----HhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--cccchh
Q 007137 478 EVQAAIQQVENVIN----RCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS--AASQIL 551 (616)
Q Consensus 478 ~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~--~~~~~~ 551 (616)
.....+.++..++. .-....+.|-++++++..+-+.. ++|..+-++-+.|.+.++.+-..|..-. ...++.
T Consensus 86 ~~~~~l~~le~ll~~~~~gls~~l~~ff~alq~la~~P~~~---~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~ 162 (624)
T PRK12714 86 QLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASST---AERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLT 162 (624)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777764 34455677788888887766544 3344444444445544444444443321 134477
Q ss_pred HhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 552 PKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 552 ~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
..|+++..+=+++.++ .+....+ + +|. - ..+..+|++|..|+-.+++
T Consensus 163 ~~V~~IN~l~~~IA~L--N~~I~~~---~---~~~--~---ndLlDqRD~ll~eLS~~v~ 209 (624)
T PRK12714 163 SSVDEVNRLTQQIAKI--NGTIGSS---A---QNA--A---PDLLDQRDALVSKLVGYTG 209 (624)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHh---c---CCC--c---hhhHHHHHHHHHHHHhhcC
Confidence 7788888887777774 2222211 1 221 2 3467788888888777654
No 253
>PRK13676 hypothetical protein; Provisional
Probab=28.20 E-value=4.2e+02 Score=23.90 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 007137 496 THDKLEASLRDLSRTGDVQACKAARKAADG--LLKELSKELKLVLSFL 541 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~--~~k~~~~~~~~~~~~l 541 (616)
+|+.-.+--+-++.|.-...|+.|++.+++ +.+++-.+....+..+
T Consensus 5 i~d~A~eL~~aI~~s~ey~~~~~A~~~l~~d~~a~~li~~F~~~q~~~ 52 (114)
T PRK13676 5 IYDLANELERALRELPEYKALKEAKEAVKADEEAKKLFDEFRALQLEI 52 (114)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 455555555555556666777777766654 3333444444444444
No 254
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.91 E-value=2.4e+02 Score=27.98 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 007137 522 AADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
.+..+.++++.....+++.|.++
T Consensus 139 ~l~~D~~~l~~~~~~l~~~l~~~ 161 (184)
T PF05791_consen 139 KLQKDSRNLKTDVDELQSILAGE 161 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHhcc
Confidence 34444444444444444444443
No 255
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.89 E-value=7.3e+02 Score=31.86 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHHHHHHHHHHH--------------HHHHHhccCccccchh
Q 007137 487 ENVINRCLTTHDKLEASLRDLSRTGDVQ-ACKAARKAADGLLKELSKELK--------------LVLSFLQSSSAASQIL 551 (616)
Q Consensus 487 ~~~~~~r~~~~~~~~~~~~~~~~~~d~~-~~~~~~k~~~~~~k~~~~~~~--------------~~~~~l~~~~~~~~~~ 551 (616)
..+-+.-...++.++++=.+..+..|.. ...+.||.+++..-++..+.. .++..+. + +.+..
T Consensus 511 ~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e-~--~~~~~ 587 (1317)
T KOG0612|consen 511 RKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE-E--NRDLE 587 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh-c--cccHH
Confidence 3333444445566666644444444432 345666777644433332222 1222222 2 66777
Q ss_pred HhHHHHHHHHHHHHH
Q 007137 552 PKVEELVAKEKDLQE 566 (616)
Q Consensus 552 ~k~~e~~~~~~~~~~ 566 (616)
++...++.....+-+
T Consensus 588 d~l~~le~~k~~ls~ 602 (1317)
T KOG0612|consen 588 DKLSLLEESKSKLSK 602 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666544443
No 256
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.85 E-value=8.3e+02 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
.-..||....+.+.||+.++..|-..|.+
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999888877754
No 257
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.61 E-value=5.7e+02 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007137 516 CKAARKAADGLLKELSKELKLV 537 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~~ 537 (616)
|..|-..++..++++.......
T Consensus 159 ~G~a~~~Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 159 YGPAIEELEKQLENIEEEFSEF 180 (560)
T ss_pred hchhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.61 E-value=8.3e+02 Score=28.03 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=9.3
Q ss_pred eeEEEe-ecCCCCcEEEEEeccCCc
Q 007137 395 ETKLSH-LDLTGRPVVVLQKTNVVP 418 (616)
Q Consensus 395 ~~~~tY-LDt~GRpvVvl~~~Nlv~ 418 (616)
++.++| ||.-+.-|--.--+|.|.
T Consensus 265 et~H~yalel~tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 265 ETGHCYALELETQRVWDYAGDNYVH 289 (493)
T ss_pred hhcceEEEeecceeeeecccchhhh
Confidence 344444 233333333333444444
No 259
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=27.58 E-value=7.8e+02 Score=26.50 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 588 SENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
|...++-..+.+-||+++.+.|.+-|.|
T Consensus 143 is~qL~~~~~~r~EL~~~~~~l~~QL~E 170 (385)
T PF15642_consen 143 ISRQLQVIPKHRVELKQKQDDLTKQLEE 170 (385)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 4444444455677999999998887765
No 260
>PRK10807 paraquat-inducible protein B; Provisional
Probab=27.50 E-value=2.8e+02 Score=32.27 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcc---C-ccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch
Q 007137 528 KELSKELKLVLSFLQS---S-SAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR 586 (616)
Q Consensus 528 k~~~~~~~~~~~~l~~---~-~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (616)
.++++.+.++.+.|+. . +...++-+-+.+|++.-++++.++ ......= |-++-||
T Consensus 476 ~~L~~TL~~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~-~~L~~~P---~aLi~g~ 534 (547)
T PRK10807 476 ADMQKTLRELNRSMQGFQPGSPAYNKMVADMQRLDQVLRELQPVL-KTLNEKS---NALVFEA 534 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCc---hhhhcCC
Confidence 3345555555555554 2 122345556666777777777654 3333222 4556665
No 261
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=27.44 E-value=6.7e+02 Score=25.46 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccch
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTG---------DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQI 550 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---------d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~ 550 (616)
-..++.+..++.+|..+-..+-..|.++.+.- ...++..+=..+-.+...+.+.-..+...|.++ +
T Consensus 18 ~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~-----v 92 (251)
T cd07653 18 IDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSN-----V 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 34588999999999999999999999887531 123455555555555444444444444444433 5
Q ss_pred hHhHHHHHH
Q 007137 551 LPKVEELVA 559 (616)
Q Consensus 551 ~~k~~e~~~ 559 (616)
++.+..+.+
T Consensus 93 ~~~l~~~~~ 101 (251)
T cd07653 93 CKELKTLIS 101 (251)
T ss_pred HHHHHHHHH
Confidence 555554443
No 262
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.37 E-value=6.4e+02 Score=32.26 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 588 SENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
.++.+..+++.+++.+++.+.-++.
T Consensus 730 ~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 730 LDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 263
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=27.20 E-value=3.3e+02 Score=21.86 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTG---DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
++.....+....+.-...++.+...++.+..+. -..+|...-..+......+.+.|..+...|..
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~ 76 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666667777777775443 34567777777777777777777777777665
No 264
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=27.16 E-value=3.3e+02 Score=30.36 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=40.2
Q ss_pred EeEEEEEEEcCCCeEEEEEEEEEEeCCCCCce--EEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCC
Q 007137 31 LSKVDRRIDLTSQIVRITSTLKVENEGSEPVS--EVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMP 108 (616)
Q Consensus 31 n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~--~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~ 108 (616)
.+-..-+.++-+.- .+.++++.|.|++|+. +| ...++.++...+...+. . .+-+.+. .
T Consensus 251 ~~v~~A~Y~vpgR~--l~~~l~VtN~g~~pv~LgeF-------~tA~vrFln~~v~~~~~-~------~P~~l~A----~ 310 (381)
T PF04744_consen 251 VKVTDATYRVPGRT--LTMTLTVTNNGDSPVRLGEF-------NTANVRFLNPDVPTDDP-D------YPDELLA----E 310 (381)
T ss_dssp EEEEEEEEESSSSE--EEEEEEEEEESSS-BEEEEE-------ESSS-EEE-TTT-SS-S----------TTTEE----T
T ss_pred EEEeccEEecCCcE--EEEEEEEEcCCCCceEeeeE-------EeccEEEeCcccccCCC-C------Cchhhhc----c
Confidence 33344567777773 4566788899999964 33 34567777433221100 0 0000000 1
Q ss_pred CcceEEEEEcCCCCCCCCeEEEEEEEE
Q 007137 109 AALTFYAVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 109 ~~~~~y~V~Lp~pl~pg~~vtl~V~~v 135 (616)
.+ ..|+=+.|++||++.+++|+..
T Consensus 311 ~g---L~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 311 RG---LSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp T----EEES--S-B-TT-EEEEEEEEE
T ss_pred Cc---ceeCCCCCcCCCceEEEEEEee
Confidence 11 3566567999999999999864
No 265
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.15 E-value=7.9e+02 Score=26.24 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
++.+++.-+.++.=+..=+.+.|++.+..=+.-....+....+...+...+....++..++..|+.
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~ 218 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQ 218 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444333444444455444331111122333333444444444444455554444443
No 266
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=27.11 E-value=3.3e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
.|..+-..+|.+|+++=..++.+...+.+.
T Consensus 5 ~~~~G~~~ID~qH~~l~~~in~l~~a~~~~ 34 (126)
T TIGR02481 5 SLSTGIEEIDAQHKELFELINELYDALSAG 34 (126)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466677889999999999999999988864
No 267
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.03 E-value=4.8e+02 Score=23.69 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHhHhhHHHHHHHHHHHhcc--Cch-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 007137 490 INRCLTTHDKLEASLRDLSRT--GDV-------------------------------QACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 490 ~~~r~~~~~~~~~~~~~~~~~--~d~-------------------------------~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
++..+.-|+...++|+.++.. .++ -++..|++-++.+.+.+++.+..
T Consensus 25 l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~ 104 (126)
T TIGR00293 25 LRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEK 104 (126)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777778777654 222 45677888888888888887777
Q ss_pred HHHHhcc
Q 007137 537 VLSFLQS 543 (616)
Q Consensus 537 ~~~~l~~ 543 (616)
+...++.
T Consensus 105 l~~~l~~ 111 (126)
T TIGR00293 105 LQEALAE 111 (126)
T ss_pred HHHHHHH
Confidence 7766664
No 268
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.01 E-value=3.3e+02 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007137 525 GLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~ 542 (616)
.++.++.+++..+.++++
T Consensus 5 ~~~~~l~~~l~~~~~q~~ 22 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQ 22 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544444
No 269
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.86 E-value=4.8e+02 Score=28.03 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHH---HHhHhhHHHHHHHHHHHh
Q 007137 478 EVQAAIQQVENVI---NRCLTTHDKLEASLRDLS 508 (616)
Q Consensus 478 ~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~ 508 (616)
+++.+..|+..+- ..|..--+.+|+|+++=|
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQK 52 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQK 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5666666666555 456677788888887733
No 270
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.83 E-value=7.2e+02 Score=25.68 Aligned_cols=57 Identities=5% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC------ccccchhHhHHHHHHHHHHHHHHHHhccccee
Q 007137 520 RKAADGLLKELSKELKLVLSFLQSS------SAASQILPKVEELVAKEKDLQEKVMAKHSTVV 576 (616)
Q Consensus 520 ~k~~~~~~k~~~~~~~~~~~~l~~~------~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~ 576 (616)
-+.+++..+.+...|.++..++..- ..+.++..++.|.+++=+++|.+=+..+-..+
T Consensus 89 a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~A 151 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNA 151 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 3556666777777777777766322 23567888888888888888776434444433
No 271
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.70 E-value=3.3e+02 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 588 SENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
...+...+++.+++..++|++||.-|+++
T Consensus 44 L~~en~~L~~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 44 LKEENEQLKQERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34455677888899999999999988874
No 272
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.66 E-value=3.1e+02 Score=30.82 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 481 AAIQQVENVINRCLTTHDKLEASLRDLSRTG-DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 481 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
.+..++.++-.+|- .+..++.+.+..+ |.+++..--|.+..+.+++.+++..+.+++.
T Consensus 39 ~l~~~~~~lr~~rn----~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 39 ELQTELEELQAERN----ALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 3344444444444 6666666666666666666666666655554
No 273
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.66 E-value=2.9e+02 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHH
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAK 560 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~ 560 (616)
....+.++..+..+.++|.+.+..|++.- ....-++.||++.
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~------~s~~qr~~eLqak 66 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQN------ASRNQRIAELQAK 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 33444455555444444333333333322 2244455555543
No 274
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=26.64 E-value=7.1e+02 Score=25.53 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=29.3
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhc
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSR 509 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 509 (616)
.|+ ..-...++.+...+.+|..+-+.+-..|.++..
T Consensus 12 ~rl--K~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak 47 (234)
T cd07652 12 DRL--KQSIASAKEFATFLKKRAAIEEEHARGLKKLAR 47 (234)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 245667999999999999999999988888765
No 275
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.59 E-value=4.5e+02 Score=32.04 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 495 TTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 495 ~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
...+.+++...+++..++ .....+++.++..++++.+++..++.+||.
T Consensus 548 ~~~~~l~~~~~~l~~~~~-~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 548 KLKEELEEKKEKLQEEED-KLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 334555555666666666666666666654
No 276
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.58 E-value=8.1e+02 Score=29.52 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.2
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVA-AQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 614 (616)
|-.+.. .+++|-.+|+.++|.+|+.+.
T Consensus 342 v~~r~n~~L~~rW~~L~~~~d~~L~~~~ 369 (683)
T PF08580_consen 342 VADRLNADLAQRWLELKEDMDSLLEDSQ 369 (683)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 444444 788899999999999887654
No 277
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.57 E-value=4.5e+02 Score=23.19 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 516 CKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
+.++-+.|++.+..|.+.+..-+..++. ..++.+.++.|..-...+-+.+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~---~~~~e~ei~~l~~dr~rLa~eL 55 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRK---RDELEEEIQRLDADRSRLAQEL 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHhhHHHHHHHH
Confidence 4455556666666666666666666655 2444444444444444444443
No 278
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=26.57 E-value=4.5e+02 Score=23.18 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 007137 482 AIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS 545 (616)
Q Consensus 482 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~ 545 (616)
+++++..++...-...+.|++++.+.+ | ..+++-=..+-.+|+..-.+|.+.+..+..+|
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~---~-~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKAE---D-PELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 566777777777777777788887755 3 66777777788888888888888888888775
No 279
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.56 E-value=7.6e+02 Score=25.84 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=25.5
Q ss_pred HhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 492 RCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 492 ~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
........++.-++.++ +++..-..++-.++.+...|..+|.-
T Consensus 93 ~e~~~~~~le~el~~lr--k~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 93 EELAERKDLEEELESLR--KDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh--hhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 33444445555566655 56666666777777776666664443
No 280
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=26.20 E-value=3.6e+02 Score=26.09 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=39.5
Q ss_pred heeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 007137 456 YMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELK 535 (616)
Q Consensus 456 ~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~ 535 (616)
++...-.-.+-++++ . -..++|++..++.-....+.+.+ |..|-..||....+ .-+-.-.-++..+|.
T Consensus 16 Lvsc~~p~~~~p~ty-s-------p~~l~~i~~~~~~i~~~~~r~~e-Lk~lI~kk~W~~vr---n~irgp~g~Lr~dl~ 83 (142)
T TIGR03042 16 LVSCSGPAAAVPPTY-S-------PAQLAQIQRQAEGIEAAKDRLPE-LASLVAKEDWVFTR---NLIHGPMGEVRREMT 83 (142)
T ss_pred HHHcCCCcccCCCCC-C-------HHHHHHHHHHHHHHHHHHHhhHH-HHHHHhhcchHHHH---HHHhccHHHHHHHHH
Confidence 444444444445554 2 23345555555555566667777 77777777765543 334444444555555
Q ss_pred HHHHHh
Q 007137 536 LVLSFL 541 (616)
Q Consensus 536 ~~~~~l 541 (616)
-+...|
T Consensus 84 ~l~~sl 89 (142)
T TIGR03042 84 YLNQSL 89 (142)
T ss_pred HHHHcc
Confidence 554433
No 281
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.20 E-value=5e+02 Score=31.30 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=17.7
Q ss_pred ecCCCCccCeeEEeccCeeeeeeeecC
Q 007137 284 AKMPPRVHSVYYRDEIGNISTSNLWGD 310 (616)
Q Consensus 284 ~~LP~~A~dvYYrD~IGNISTS~~r~~ 310 (616)
+-+-..|..+|=+|.=|-.||-+|-.-
T Consensus 234 ~~~~~~a~~~~n~~~d~~~Ss~~FE~i 260 (961)
T KOG4673|consen 234 MDETTNAQEILNENLDGRTSSKNFEVI 260 (961)
T ss_pred HHhhhhhhhhhccccccccccchhhhc
Confidence 344566777777888888777655443
No 282
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=26.01 E-value=9.8e+02 Score=26.93 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccc----cc
Q 007137 512 DVQACKAARKAADGLLKELSK----ELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEK----KT 583 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~----~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~----~~ 583 (616)
++++=..-|+.+..+...++. -|+++-..+|+-...+.+-+-+.++...-++||..+ ..++...-.-|. ..
T Consensus 282 eiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~~~~~~~~~~~~~~A~~~Lq~~l-~~~~~ll~~s~~~~~~~~ 360 (406)
T PF11744_consen 282 EIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTKSSSIDDHVANLKEAAEDLQSKL-DSQSYLLLNSESPERSFL 360 (406)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH-HhCCccccCCchhhhhhc
Confidence 455555666666666555433 344555555544334556678888888888888887 444411101111 00
Q ss_pred cc--------h-----hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 584 GI--------R-----DSENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 584 ~~--------~-----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
.+ + .+-. ++....=+-|...++|.|.|+.+|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~-lat~aSlLie~v~r~~~iv~~v~eL 405 (406)
T PF11744_consen 361 RPQSSKEAEWTSYELLEALP-LATFASLLIEFVARLENIVEAVEEL 405 (406)
T ss_pred cccccccccccchhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 1 1122 3677788999999999999999884
No 283
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=26.00 E-value=1.2e+03 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.092 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 500 LEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 500 ~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
+..++..+-.+.|........+.+.+..+.+.+.++.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 98 (968)
T TIGR02956 59 IIFSVQLLSNVDDERQRQAIGKKLTLQSETLLHSLKALGE 98 (968)
T ss_pred HHHhchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556667778777777777777766666666665543
No 284
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.93 E-value=2.7e+02 Score=29.63 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccc
Q 007137 509 RTGDVQACKAARKAADGLLKELSKELKLVLSFLQS-----SSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKT 583 (616)
Q Consensus 509 ~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~-----~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~ 583 (616)
.++-.+.+=.+.|.+-..+..+..+......+|.. .+--+|++|||..|.---.++.+.+-+...++= ..+=
T Consensus 55 ~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR---~~LK 131 (271)
T PF13805_consen 55 LSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYR---IHLK 131 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34444555555666666666666666666555542 112367788887777666666666522222221 1111
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHH
Q 007137 584 GIRDSENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 584 ~~~~~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
.-+.+|+.++.....+..|..+|..|
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 22357777777777777777777765
No 285
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=25.92 E-value=1.2e+02 Score=30.33 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=54.3
Q ss_pred EeEEEEEEEcCC-----CeEEEEEEEEEEeCCCCC---ceEEEEEeCCcccccee---E--EEEeeCCCCCccccccccc
Q 007137 31 LSKVDRRIDLTS-----QIVRITSTLKVENEGSEP---VSEVLLAFPDLQVKDLA---L--LKASPHEGKGKVKSLSASL 97 (616)
Q Consensus 31 n~~v~RtIDLs~-----~~Vk~t~~i~vkN~g~~p---~~~y~~~lp~~~~~~ls---~--i~a~~~~~k~k~~~~~~~L 97 (616)
.+.++=.++++. +=--++=++++.|..... -.+|.|-+|..--+++. . +++..++..
T Consensus 33 ~~~ldv~v~~~gf~~GD~NYPI~Pkl~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght---------- 102 (180)
T PF06483_consen 33 TEALDVSVSFTGFKLGDSNYPINPKLTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHT---------- 102 (180)
T ss_pred CceEEEEEEeCCcccCCCCCCcCCcEEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCc----------
Confidence 334444455544 323456678888865433 37777877755422111 1 111111110
Q ss_pred ceeeccCCCCCCcceEEEEEcCC--CCCCCCeEEEEEEEEec
Q 007137 98 PVENVKPNGMPAALTFYAVKLPK--ALGKGDSYTFDVLAVFA 137 (616)
Q Consensus 98 ~v~~~~~~~~~~~~~~y~V~Lp~--pl~pg~~vtl~V~~v~t 137 (616)
..--++.+...+++-..++||. .|+||+++.+.+.|.+-
T Consensus 103 -~~g~NiGGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyLP 143 (180)
T PF06483_consen 103 -AAGNNIGGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYLP 143 (180)
T ss_pred -ccCCcccccCCceEEEEEECCCccccCCCCEEEEeEEEEec
Confidence 0011223345667778999998 99999999999988764
No 286
>PRK14127 cell division protein GpsB; Provisional
Probab=25.92 E-value=5.3e+02 Score=23.81 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
|..++..-.+.+..+...+..+|.++++++..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555556666777777777777776664
No 287
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.81 E-value=5.1e+02 Score=30.29 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhee----------------eeeEEecCchHHHhhhchHHHHHHHHHH-----HHHHHHhHhhHH
Q 007137 440 FMLIFGFFSLFVAGIVYMH----------------VDMSISKSSAAYLARLQWDEVQAAIQQV-----ENVINRCLTTHD 498 (616)
Q Consensus 440 L~i~~~~f~lFl~~i~~~r----------------lD~sI~k~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~~~~~ 498 (616)
+.++..+.++|.+.+++++ +++.|. |+-+.+.+| ..-|.+|.. +.-.+--...+-
T Consensus 6 v~llVilv~~~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~-dEi~kVK~L---~L~GQTe~~Fe~Wrq~W~di~~~~fa 81 (570)
T COG4477 6 VALLVILVAAYAVGYLLRKKNYQRIDKLEERKNELLNLPVN-DEISKVKKL---HLTGQTETKFEEWRQKWDDIVTNSFA 81 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCch-hHHHHHhcC---cccCccHHHHHHHHHHHHHHHHhhcc
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecc
Q 007137 499 KLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDC 578 (616)
Q Consensus 499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (616)
.+|+.+-+=-..-|.=-|+.|+..++. ..+.|..+-..++. +.+-|++|.+.++.-.+++ ...-|.
T Consensus 82 dvEE~lfeAE~~~dkfrF~kA~~~i~~----ie~~l~~iE~~i~~------il~~l~~Lv~sEekN~~~i----~~~~el 147 (570)
T COG4477 82 DVEEHLFEAEALADKFRFNKAKHEIDD----IEQQLTLIEEDIEQ------ILEDLNELVESEEKNSEEI----DHVLEL 147 (570)
T ss_pred cHHHHHHHHHHhhhhhhhHHhhhhHhh----HHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHH----HHHHHH
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 579 YEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 579 ~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
|+++ .-.-++|+ .....-..++-.++++|-.-|+
T Consensus 148 y~el-r~~vl~n~-~~~Ge~~~~lEk~Le~i~~~l~ 181 (570)
T COG4477 148 YEEL-RRDVLANR-HQYGEAAPELEKKLENIEEELS 181 (570)
T ss_pred HHHH-HHHHHHhh-hhhhhhhHHHHHHHHHHHHHHH
No 288
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.80 E-value=6.1e+02 Score=26.12 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 007137 522 AADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+.+++|+..-.++...+....
T Consensus 161 ka~~~Y~~~v~~~~~~~~~~~ 181 (261)
T cd07648 161 KAQDEYKALVEKYNNIRADFE 181 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 289
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.76 E-value=9.9e+02 Score=26.91 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=84.4
Q ss_pred EEEEEEEEEEEeeeeeeEEEEEEEEEEcCCCCCCCcchhhhccCCCcCcccceeEeeecCCCCccCeeEEeccCeeeeee
Q 007137 227 VGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSN 306 (616)
Q Consensus 227 ~v~~L~R~IEVSHWGNIavEE~y~L~N~GAkLkG~FSR~dyq~~~~~~~~~a~~~l~~~LP~~A~dvYYrD~IGNISTS~ 306 (616)
.-++++|.|.++. +-+.+.-.+.++|.|.+--++| .-.-.......+..+.+.+-.......- .+....
T Consensus 3 ~n~~~~R~idl~~-~~vk~~~~i~i~N~g~~p~~~y-----~~~l~~~~~~~ls~~~a~~~~~~~~~~~-----~~~~~~ 71 (432)
T PF04597_consen 3 ENTNVERTIDLSK-SYVKETIEITIKNIGDEPVSEY-----YFALPNDEADHLSYVSAKDKDKKKKLKV-----SKEITE 71 (432)
T ss_pred EEeeEEEEEEccC-cEEEEEEEEEEEECCCCCceEE-----EEEECchhhccEEEEEEEECCCcccccc-----cccccc
Confidence 4578999999986 4467777889999987663332 1110011122333344443333222211 122222
Q ss_pred eecCCCeeEEEeccCCcccCCcceeEEEeecCCcccc-----EeecCCeEEEEEecc-CCCCceEEEEEEEEEEcCCCCc
Q 007137 307 LWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDF-----LFELEGNRFLNITFG-SPMNELVIDNLIVKVVLPEGSG 380 (616)
Q Consensus 307 ~r~~~~~~~LeL~PRFPLfGGWk~~FtiGYn~Pl~~~-----L~~~~~~y~L~vpf~-~~~~d~~~d~~~vkIiLPEGA~ 380 (616)
+..+.....+++.-.-||-.|=+.+.++.|..--.-. +.-.+.+++ ..... .++.-=-.++.+++|.|| ..+
T Consensus 72 ~~~~~~~~~~~i~L~~pl~~~~~~~l~v~~~~~~~~~P~P~~I~q~e~Q~v-~~~~~~~~~SpY~t~~q~t~i~~~-~~~ 149 (432)
T PF04597_consen 72 VNSGSEIKYYEITLPKPLAPGEKVTLTVEYVLTHALKPYPAEITQGEKQLV-LFTGNAYPLSPYPTKKQKTKIKLP-SSK 149 (432)
T ss_pred ccCCCCcceEEEECCCCCCCCCEEEEEEEEEecccceEcCCcccCCCceEE-EEEcCEEecCCccccEEEEEEEec-CCc
Confidence 2222223358888889999999999999886532211 112333443 22211 111122456799999999 555
Q ss_pred cceecCCC---cee-eeceeEEE
Q 007137 381 DISVSAPF---PVN-QWEETKLS 399 (616)
Q Consensus 381 ~I~v~~P~---~v~-~~~~~~~t 399 (616)
..++...- +.. ......|.
T Consensus 150 i~s~t~~~~~~~~~~~~~~i~yG 172 (432)
T PF04597_consen 150 IESYTKVEFEKPPKKKGNTITYG 172 (432)
T ss_pred eecccCccccCCceecCCeEEec
Confidence 55544443 444 34444553
No 290
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.73 E-value=6e+02 Score=24.53 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC----------------------chHHHHHHHHHHHHHHHHHHHHH
Q 007137 477 DEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG----------------------DVQACKAARKAADGLLKELSKEL 534 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----------------------d~~~~~~~~k~~~~~~k~~~~~~ 534 (616)
.+....+..+..+++.|-.....++.+.+.+.+-+ .+.....+.+.+..++...+..+
T Consensus 96 ~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~ 175 (218)
T cd07596 96 KEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERL 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccccc
Q 007137 535 KLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
..=..+...+ |+.++..+=+.+-+..+.-+...++..|.+..
T Consensus 176 ~~El~~f~~~--------~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 176 KEELKRFHEE--------RARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 291
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.66 E-value=1.1e+03 Score=27.58 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhcccce
Q 007137 555 EELVAKEKDLQEKVMAKHSTV 575 (616)
Q Consensus 555 ~e~~~~~~~~~~~~~~~~~~~ 575 (616)
.|++.+++.++|..+.+....
T Consensus 378 ~el~~~e~~lqEer~E~qkL~ 398 (546)
T PF07888_consen 378 RELQMLEEHLQEERMERQKLE 398 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766665543
No 292
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=25.62 E-value=1.3e+02 Score=20.00 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007137 518 AARKAADGLLKELSKELK 535 (616)
Q Consensus 518 ~~~k~~~~~~k~~~~~~~ 535 (616)
+|+|.+|++|..|+.+..
T Consensus 1 ~akk~lEa~~qkLe~e~q 18 (21)
T PF02370_consen 1 EAKKQLEADHQKLEAEKQ 18 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 478999999888877643
No 293
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.52 E-value=6.8e+02 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
-|+.+....--..|.+.+.|++++..+++.+..+
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666667888888888888888877765
No 294
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.48 E-value=9.9e+02 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.312 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhheeeeeEE
Q 007137 440 FMLIFGFFSLFVAGIVYMHVDMSI 463 (616)
Q Consensus 440 L~i~~~~f~lFl~~i~~~rlD~sI 463 (616)
+.++++++++|+..-.+.++|.-+
T Consensus 24 ~~~~~~~~~~~~~WA~~~~~~~~v 47 (457)
T TIGR01000 24 IVPIFLLLVFLVLFSLFAKKEIVI 47 (457)
T ss_pred HHHHHHHHHHHHHHHHhEeeeEEE
Confidence 445556666666666677777654
No 295
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=25.45 E-value=7.2e+02 Score=25.17 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLR 505 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 505 (616)
++....+++...++.|...++.-.+++.
T Consensus 65 ~v~~~~~~a~~nv~~R~k~l~~Ek~ai~ 92 (204)
T PF10368_consen 65 EVKKLSDEALKNVDEREKELKKEKEAIE 92 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444443
No 296
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.41 E-value=4e+02 Score=22.17 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH--HhcccceeccccccccchhhhhhHHHHHHHHHHHHHH
Q 007137 528 KELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV--MAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQE 605 (616)
Q Consensus 528 k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~ 605 (616)
..+.++|...+..++..+ + .+|-..|.+.++.+.|.- +.+-...+ .+-....+ ...+.|+...+++
T Consensus 2 ~~l~~~i~~~l~~~~~~~-~---~~r~~~i~~~e~~l~ea~~~l~qMe~E~-------~~~p~s~r-~~~~~kl~~yr~~ 69 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLS-G---EQRKSLIREIERDLDEAEELLKQMELEV-------RSLPPSER-NQYKSKLRSYRSE 69 (79)
T ss_dssp HHHHHHHHHHHHHGGGS--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CTS-HHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCHHHH-HHHHHHHHHHHHH
Confidence 345556666666666541 2 344444444444443321 12222211 22122333 5566666666666
Q ss_pred HHHHHH
Q 007137 606 VENLLE 611 (616)
Q Consensus 606 ~~~~~~ 611 (616)
++.+=.
T Consensus 70 l~~lk~ 75 (79)
T PF05008_consen 70 LKKLKK 75 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665533
No 297
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=25.30 E-value=6.2e+02 Score=24.40 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
..|..+.+-+-+..-...++|.-|...|-.+ .......++.|-+++.+..|..
T Consensus 52 ~p~~~~~~~laa~i~~~akqId~LIdsLP~~--~~~~e~Ql~~i~kLq~en~e~~ 104 (139)
T KOG1510|consen 52 EPFEEYAQLLAADIAKKAKQIDTLIDSLPGE--EGSAEAQLEKIKKLQEENEEVA 104 (139)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888899999999999988 5666677888888888777753
No 298
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=25.26 E-value=5.6e+02 Score=25.25 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccC-----ccccchhHhHHHHHHHHHHHHHHHH
Q 007137 498 DKLEASLRDLSRTGDVQA---CKAARKAADGLLKELSKELKLVLSFLQSS-----SAASQILPKVEELVAKEKDLQEKVM 569 (616)
Q Consensus 498 ~~~~~~~~~~~~~~d~~~---~~~~~k~~~~~~k~~~~~~~~~~~~l~~~-----~~~~~~~~k~~e~~~~~~~~~~~~~ 569 (616)
.++++.+..+.+..+.+. ..-...++-+...+++.+++...-+-+.. +...++.+++.+-+..++.+.+++
T Consensus 47 ~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi- 125 (173)
T PF07445_consen 47 QEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMI- 125 (173)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHH-
Confidence 344444444444433222 23333445555555655555443222221 113567888889999999999886
Q ss_pred hcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 570 AKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 570 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
...-...+..... .-.-+.++|....+.+..|++-|+.|=+.|
T Consensus 126 ~~~e~~l~~~~~~-~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I 168 (173)
T PF07445_consen 126 QEREQQLEQAQSF-EQQQLQQEILALEQRLQRCRQAIEKIEEQI 168 (173)
T ss_pred HHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221111111 111577788888888888888887776555
No 299
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.17 E-value=5.6e+02 Score=25.55 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcc----ccchhHhHHHHHHHHHHHHHH
Q 007137 517 KAARKAADGLLKELSKELKLVLSFLQSSSA----ASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~----~~~~~~k~~e~~~~~~~~~~~ 567 (616)
+.....+.++..++.+++..+..+|...-. ..+=...++++..+.++++++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l 122 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKEL 122 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555443311 223333455555555555543
No 300
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.05 E-value=5.6e+02 Score=23.79 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.+..|.+-++...+.+++.+..+...|..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~ 119 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQK 119 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777666654
No 301
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=24.93 E-value=7.2e+02 Score=25.03 Aligned_cols=68 Identities=10% Similarity=0.208 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh----ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 476 WDEVQAAIQQVENVINRCLTTHDKLEASLRDLS----RTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
|++.-......++.+..-...-..|-+|+.+.. .++....+.++-..+-..|+.++.++..+...|-.
T Consensus 12 ~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~ 83 (219)
T PF08397_consen 12 WENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHS 83 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666777777777765 23346677777777777777777666666555544
No 302
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.78 E-value=8.2e+02 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 588 SENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
.+.+|+.....++....+-..||+
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 303
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.62 E-value=6.9e+02 Score=30.46 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 007137 482 AIQQVENVINRC 493 (616)
Q Consensus 482 ~~~~~~~~~~~r 493 (616)
+++.+..++...
T Consensus 503 ii~~A~~~~~~~ 514 (782)
T PRK00409 503 IIEEAKKLIGED 514 (782)
T ss_pred HHHHHHHHHhhh
Confidence 444444444433
No 304
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.60 E-value=6.6e+02 Score=24.54 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQA-CKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~-~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
+++.+.+++.++...+...-+.|++....+.+--+... |+- |+.++-..-.+.-..+++..+..
T Consensus 4 d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkG--ka~dsiK~y~~~vh~pll~~~~~ 68 (204)
T PF04740_consen 4 DVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKG--KAYDSIKNYFSEVHIPLLQGLIL 68 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555555555555 432 12222222223335556555554
No 305
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.39 E-value=8.1e+02 Score=27.43 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHh
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGD------VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPK 553 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d------~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k 553 (616)
..+-.|+...-.++...+..+...........+ +.... +-..+-+++-++.+++.++...++.. .+.+...
T Consensus 242 ~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~-~i~~Lr~~~~~~~~~~~~l~~~~~~~--~p~~~~~ 318 (458)
T COG3206 242 SALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESP-TIQDLRQQYAQVRQQIADLSTELGAK--HPQLVAL 318 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccH-HHHHHHHHHHHHHHHHHHHHHhhccc--ChHHHhH
Confidence 333444455555555555555444444333332 11111 34455555666666666776666665 4444444
Q ss_pred HHHHHHHHHHHHHH
Q 007137 554 VEELVAKEKDLQEK 567 (616)
Q Consensus 554 ~~e~~~~~~~~~~~ 567 (616)
=.++...+++.++.
T Consensus 319 ~~q~~~~~~~~~~e 332 (458)
T COG3206 319 EAQLAELRQQIAAE 332 (458)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 306
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.37 E-value=5.3e+02 Score=30.52 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHH---HHHHhHhhHHHHHHHHHHHhccCchHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 007137 475 QWDEVQAAIQQVEN---VINRCLTTHDKLEASLRDLSRTGDVQACK--------------AARKAADGLLKELSKELKLV 537 (616)
Q Consensus 475 ~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~~~~~d~~~~~--------------~~~k~~~~~~k~~~~~~~~~ 537 (616)
+|++++.+-+++.. -+..+-..|..|...+.+.....+-++|. ..-.++-.+-|++.++|+.+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444433 33455566667766666665554444442 22234556677777777777
Q ss_pred HHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccccc
Q 007137 538 LSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 538 ~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
..+|.-. -+-+-++|=.=-|+|-..|..+ ...+.+=+.++.++.
T Consensus 525 ~gkL~Rt--F~v~dElifrdAKkDe~~rkaY-K~La~lh~~c~~Li~ 568 (594)
T PF05667_consen 525 TGKLDRT--FTVTDELIFRDAKKDEAARKAY-KLLASLHENCSQLIE 568 (594)
T ss_pred HHHHHhH--HHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7777764 4444455555555666555553 444444444455543
No 307
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.36 E-value=1.1e+03 Score=26.90 Aligned_cols=93 Identities=15% Similarity=0.024 Sum_probs=57.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHH---HHhHhhHHHHHHHHHHHhcc
Q 007137 434 SMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVI---NRCLTTHDKLEASLRDLSRT 510 (616)
Q Consensus 434 ~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~ 510 (616)
.++.+-|....+.=+++.+.....-.||++.-=-.-+ |+ |.+.++.-|.+.- +.|...|+.+.+...-
T Consensus 72 ei~~~sL~~~~l~ki~~~Fl~~i~v~dF~~~DLlkPe-s~----Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~es---- 142 (446)
T KOG4438|consen 72 EIHAESLQFKLLCKILDMFLMNIGVLDFSFKDLLKPE-SS----RTQRFLSAVVNFALFREEKMDLYRPFIQQLES---- 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCchhhhcCcc-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4455666656656688888888899999985322122 21 4566666664433 6666666666544332
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
.---|+.+|+.|.++.+++..+...
T Consensus 143 -----lle~~~q~da~~qq~~~ele~~d~~ 167 (446)
T KOG4438|consen 143 -----LLELRKQLDAKYQQALKELERFDED 167 (446)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2245777777777777777766544
No 308
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=24.35 E-value=5e+02 Score=24.18 Aligned_cols=9 Identities=0% Similarity=0.346 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 007137 478 EVQAAIQQV 486 (616)
Q Consensus 478 ~~~~~~~~~ 486 (616)
.+..+++++
T Consensus 14 ~l~~~~~~~ 22 (120)
T PF09969_consen 14 LLRPILEEI 22 (120)
T ss_pred HHHHHHHHH
Confidence 344444444
No 309
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.35 E-value=8e+02 Score=25.34 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCccccch-hHhHHHHHHHHHHHHHHHHhccccee-ccccccccch
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFL----QSSSAASQI-LPKVEELVAKEKDLQEKVMAKHSTVV-DCYEKKTGIR 586 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l----~~~~~~~~~-~~k~~e~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ 586 (616)
++..-+.+|.++.++.++......++.+- ... ..++ .+-+.+.+.++..+... .++.+.+ +..++
T Consensus 47 ~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g--~E~LAr~al~~~~~le~~~~~~--~~~~~~~~~~~~~----- 117 (225)
T COG1842 47 LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG--NEDLAREALEEKQSLEDLAKAL--EAELQQAEEQVEK----- 117 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----
Confidence 45566667778888888888777776543 222 2222 23355666666555442 2222221 00122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 587 DSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
++..+..+.+|+.+++.+.+.+..
T Consensus 118 -l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 118 -LKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355557777888888887777654
No 310
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.33 E-value=6.2e+02 Score=24.03 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
.-..|....+.+-++.-.-.++|.-|+..|=.. +..-.+.+..|.+++.++++.
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~--~~see~Q~~~i~~L~~E~~~~ 116 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGI--EVSEEEQLKRIKELEEENEEA 116 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTS--SS-HHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777788888888888876 444556666777777766664
No 311
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=24.24 E-value=6.4e+02 Score=24.16 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccc
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHST 574 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~ 574 (616)
++.++.|||+...++-+...-...|+..|-+- +.+-+ .++|+..+.++.--. ++.|..
T Consensus 15 InelQQaKKk~~EELgEa~~l~eaL~~ELDsL--~~Ekv-hLeeilnkKqe~l~i-Lqlhcq 72 (134)
T PF15233_consen 15 INELQQAKKKSSEELGEAQALWEALQRELDSL--NGEKV-HLEEILNKKQETLRI-LQLHCQ 72 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--hhhHH-HHHHHHHHHHHHHHH-HHHHHH
Confidence 45567789999888888777777777776654 44444 577777666655443 366655
No 312
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.21 E-value=6.2e+02 Score=32.48 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=23.1
Q ss_pred eEEeccCeeeeeeeecC-CCeeEEE-eccCCcc-cCCcceeEEEeecCC
Q 007137 294 YYRDEIGNISTSNLWGD-SKKTELL-IEPRYPL-FGGWRTAFTIGYGLP 339 (616)
Q Consensus 294 YYrD~IGNISTS~~r~~-~~~~~Le-L~PRFPL-fGGWk~~FtiGYn~P 339 (616)
|--|.-|-..||||-.. .+...-+ ..||-|. |-|=.-.| |||+--
T Consensus 356 ~vPevssd~DTsnFd~~~dd~~~~e~~p~~~~~~f~Gn~LPF-IGfTy~ 403 (1317)
T KOG0612|consen 356 VVPEVSSDDDTSNFDVDEDDLRDAETFPPRIPKAFSGNHLPF-IGFTYT 403 (1317)
T ss_pred CCCcCCCCCccccccccccccchhhccCCCCCCCCcCCcCCe-eeeeec
Confidence 33455677789999432 2222333 3445543 44544444 566544
No 313
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.17 E-value=2.5e+02 Score=30.89 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
+.+..+.+..-.+.+..-+..+.++|++ -...++.+.++++.+...|.+++..|+.
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkR-----t~EeL~~G~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKR-----TEEELNIGKQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777766666666543 3456777777777777776666666554
No 314
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=24.14 E-value=1.2e+03 Score=27.26 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
.+.+-...+.+...+|+|+..+..|..+|... --.+..|+.|+.
T Consensus 346 sqile~sv~~l~~~lkDLd~~~~aLs~rld~q--EqtL~~rL~e~~ 389 (531)
T PF15450_consen 346 SQILEDSVAELMRQLKDLDDHILALSWRLDLQ--EQTLNLRLSEAK 389 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHH
Confidence 34455555666666777777777777776653 445556666554
No 315
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=1.2e+02 Score=29.50 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 592 VAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 592 ~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
.+-.++|++-|...||.|-+.|+|
T Consensus 103 kdyfkRKve~l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 103 KDYFKRKVEYLTKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888777654
No 316
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.09 E-value=4.3e+02 Score=23.51 Aligned_cols=95 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHH------HHHHHHHHhcccceeccccccccch
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKE------KDLQEKVMAKHSTVVDCYEKKTGIR 586 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~------~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (616)
+++....=..+..++..+.+++..+.+.+.. .-.-..||..++ +.+=+-++......+ ...+..+
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E------~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea---~~~Le~~ 71 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNE------NKKALEELEKLADDAEVYKLVGNVLVKQEKEEA---RTELKER 71 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCCcchHHHHhhhHHhhccHHHH---HHHHHHH
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 587 --DSENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 587 --~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
+++.+++.+..+++.+..++..+-..|.|+
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=24.09 E-value=1.5e+03 Score=28.33 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
..+.+.+|.+.++.+++.......+.++.+.
T Consensus 565 ~ld~leaa~e~lE~r~~~~e~~~~e~~se~e 595 (984)
T COG4717 565 ALDQLEAAYEALEGRFAAAEAAMAEWQSEWE 595 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3567888999999999988888888887654
No 318
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.09 E-value=4.4e+02 Score=33.67 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cccchhHhHHHHHHHHHHHHHH
Q 007137 497 HDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSS-AASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~-~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
...++++.+.+|++|=+.+|.+.- -++.++|.++..-|.+-+ ...+++.-.++++.+.+++++.
T Consensus 1180 t~rl~~~A~~l~~tGv~gay~s~f-------~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1180 THRLINRAKELKQTGVLGAYASRF-------LDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHhhhccCchhhHhHH-------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788889999888776544 444556666677775432 1344455555555566666553
No 319
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=24.08 E-value=1.1e+03 Score=27.75 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=54.3
Q ss_pred EeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCc
Q 007137 31 LSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAA 110 (616)
Q Consensus 31 n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~ 110 (616)
.-++.=++|+.+..+.-+++|+++...+ +.+...+-. ..|..-+|.+++. .++.+..... +..
T Consensus 15 hy~L~L~vd~~~~~~~G~v~i~l~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~---------~~~~~~~~~~--~~~ 77 (601)
T TIGR02411 15 HTDLNLSVDFTKRKLSGSVTFTLQSLTD-NLNSLVLDT-----SYLDIQKVTINGL---------PADFAIGERK--EPL 77 (601)
T ss_pred EEEEEEEEeecCCEEEEEEEEEEEECCC-CCcEEEEEC-----CCCEEEEEEECCc---------ccceEecccc--CCC
Confidence 3445567888888888888888876432 234555543 2344445554332 1112111111 111
Q ss_pred ceEEEEEcCCCCCCCCeEEEEEEEEec
Q 007137 111 LTFYAVKLPKALGKGDSYTFDVLAVFA 137 (616)
Q Consensus 111 ~~~y~V~Lp~pl~pg~~vtl~V~~v~t 137 (616)
...+.|.||.++++|+..+|.|.|.-+
T Consensus 78 g~~L~I~l~~~l~~g~~~~l~I~Y~~~ 104 (601)
T TIGR02411 78 GSPLTISLPIATSKNKELVLNISFSTT 104 (601)
T ss_pred CCeEEEEeCCccCCCceEEEEEEEeec
Confidence 246899999999999999999988743
No 320
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.04 E-value=7.6e+02 Score=24.96 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007137 496 THDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l 541 (616)
..+++++.|.+.+++ ++...+.+|.++.++.++...+.....+-
T Consensus 32 ~irem~~~l~~ar~~--lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 32 IIQEMEDTLVEVRTT--SARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667666654 77778888888888888888888776553
No 321
>PRK12705 hypothetical protein; Provisional
Probab=23.99 E-value=1.2e+03 Score=27.16 Aligned_cols=17 Identities=18% Similarity=0.091 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007137 597 QKITALRQEVENLLELI 613 (616)
Q Consensus 597 ~k~~~~~~~~~~~~~~~ 613 (616)
+=.++++.++..++.-+
T Consensus 150 ~~~~~~~~e~~~~i~~~ 166 (508)
T PRK12705 150 LLDAELEEEKAQRVKKI 166 (508)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345666666555443
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=3.2e+02 Score=30.11 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch
Q 007137 509 RTGDVQACKAARKAADGLLKELSKE--LKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR 586 (616)
Q Consensus 509 ~~~d~~~~~~~~k~~~~~~k~~~~~--~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 586 (616)
++-|+.+|--+.--+.+.+++++++ .++++..+.. ..+.++|++|++-++...|-.+ ++.-... +.+-|+
T Consensus 269 s~~~s~a~~~~~~v~a~~l~~~~~~~G~~e~l~s~~E---~~e~seKl~~i~~lE~~~k~~v-~~~e~~l----~A~~~k 340 (418)
T KOG4570|consen 269 SPEDSKACREALDVLAAVLKALTSADGASEELSSNDE---DNEGSEKLVEILDLEETEKSKV-PQYEERL----KALHSK 340 (418)
T ss_pred CchhhhhhHHHHHHHHHHHHHHhhhcchHHHHHhhhh---hhhhhHHHHHHHHHHHHHHhch-hhhHHHH----HHHHHH
Q ss_pred -----hhhhhHHHHH-----HHHHHHHHHHHHHHHhhhc
Q 007137 587 -----DSENRVAAQQ-----QKITALRQEVENLLELIDE 615 (616)
Q Consensus 587 -----~~~~~~~~~~-----~k~~~~~~~~~~~~~~~~~ 615 (616)
-++.| +..+ |=+.+-...|+.=+..|+|
T Consensus 341 l~~ew~~~~e-al~~rQl~~qlv~er~~ti~~el~~l~e 378 (418)
T KOG4570|consen 341 LQAEWKIESE-ALLSRQLTTQLVKERLSTIEAELIALYE 378 (418)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 323
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.95 E-value=99 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
++||++..+...++-++.++++|=+++++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 324
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.88 E-value=7.2e+02 Score=30.43 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=24.9
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 582 KTGIRDSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 582 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
......++.++..+..-...++.+||.|++.|.+
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~ 580 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILRE 580 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467777666666778888999999988765
No 325
>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins. BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains
Probab=23.87 E-value=4.5e+02 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 007137 593 AAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
......|.++..+|.+++++||.
T Consensus 55 ~~~R~~RK~~v~~iq~~l~~lD~ 77 (79)
T smart00264 55 PDIREARKRLVRLIQNLLNALDS 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667888999999999999985
No 326
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.83 E-value=3.5e+02 Score=23.73 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
....++.+++.+...++++...|.+|...+.
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555555555554444
No 327
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.65 E-value=7.4e+02 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHH
Q 007137 494 LTTHDKLEASLRDLSRTGDVQACKAARKAA 523 (616)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~ 523 (616)
....+.+.++...+.-..|..++.+++..+
T Consensus 824 ~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 824 KQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 333444444555555566677777766666
No 328
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=23.59 E-value=8e+02 Score=27.55 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
+.+++++.++.+.++.+...+..+.-.
T Consensus 258 ~~L~~~~~~l~~~~~~l~~~l~~~~~E 284 (459)
T PF10337_consen 258 KKLKATKAKLRALYAKLQAALRFLKLE 284 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566677777777666666555544433
No 329
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.53 E-value=4.7e+02 Score=26.90 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHH
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVA 559 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~ 559 (616)
+...+++.+...+-...-....+.+++ +...+..+.++++.+.+++..+....+.- ...+.+.=+++..
T Consensus 20 a~~~~~~~~~~~~~~~~~~~sQ~~id~---------~~~e~~~L~~e~~~l~~e~e~L~~~~~~l--~~~v~~q~~el~~ 88 (251)
T PF11932_consen 20 AATLDQAQQVQQQWVQAAQQSQKRIDQ---------WDDEKQELLAEYRQLEREIENLEVYNEQL--ERQVASQEQELAS 88 (251)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcccceeccccccccch--hhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 560 KEKDLQEKVMAKHSTVVDCYEKKTGIR--DSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
+++++.+.- .....++-..++.+.+= +|+..+=-..+.+.+-..++..+|+
T Consensus 89 L~~qi~~~~-~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~ 141 (251)
T PF11932_consen 89 LEQQIEQIE-ETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLD 141 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhh
No 330
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=23.52 E-value=1.3e+02 Score=31.51 Aligned_cols=37 Identities=35% Similarity=0.390 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.++.++..+|...++.|+.+|++ +||+++++.|+|.+
T Consensus 3 ~eL~sYK~QLqqVeaaL~~dP~N-------eEllkLe~DLkEvI 39 (262)
T KOG3026|consen 3 KELASYKLQLQQVEAALQGDPEN-------EELLKLEKDLKEVI 39 (262)
T ss_pred hHHHHHHHHHHHHHHHHccCCcc-------HHHHHHHHHHHHHH
Confidence 45566677999999999998765 56777777777765
No 331
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.51 E-value=8.3e+02 Score=25.22 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=13.8
Q ss_pred cchhHhHHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~~ 568 (616)
..+.|++.....+=..+|+++
T Consensus 116 ~~vlE~Lk~~~d~l~S~r~lf 136 (246)
T cd07597 116 DGVLEKLKLQLDLLVSLRDLF 136 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 446777776666666666664
No 332
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=23.45 E-value=8.3e+02 Score=25.23 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
+.+...++|...+.+=-.+-+.+.++..+|...+....-+..|..+-+.+.+.-....++.+.|..
T Consensus 201 k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~e 266 (296)
T PF13949_consen 201 KFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDAYKELSSNLEE 266 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455667777777777777778888888888888877766677777777777777777777777776
No 333
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=23.40 E-value=7.5e+02 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKL 500 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~ 500 (616)
+++.+.+.+.+++|+|...-++.
T Consensus 207 ema~lL~sLt~HfDqC~~a~~~~ 229 (412)
T PF04108_consen 207 EMASLLESLTNHFDQCVTAVRHT 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555666665544433
No 334
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.37 E-value=9.3e+02 Score=29.77 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHH
Q 007137 477 DEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEE 556 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e 556 (616)
+.....--|+.-++++|+ .+|-..++ +|.++..++.+.|+..-+|..+-++|-.+ -.+++.|-.|
T Consensus 99 ddlk~~~sQiriLQn~c~----~lE~ekq~---------lQ~ti~~~q~d~ke~etelE~~~srlh~l--e~eLsAk~~e 163 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCL----RLEMEKQK---------LQDTIQGAQDDKKENEIEIENLNSRLHKL--EDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHhhhhHH
Q ss_pred HHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 557 LVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
|+.+-..++++- +.+. +-+ ..+++|..+..++=..+-.-+.
T Consensus 164 If~~~~~L~nk~-----------~~lt-----~~~-~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 164 IFMIGEDLHDKN-----------EELN-----EFN-MEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHHHHHHhhhh-----------hHHh-----HHH-HHHHHHHHHHHHHHHHHHHHHH
No 335
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.29 E-value=1.2e+03 Score=28.94 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhccCchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 483 IQQVENVINRCLTTHDKLEASLRDLSRTGDVQ--------ACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~--------~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
.|++..-...+...=...++|.+.+..-.+-+ ..+..--.+.++|.++-.+..+++.++.+.
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~ 457 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA 457 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556666664443332221 111222234455556666666666665543
No 336
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=23.07 E-value=4.5e+02 Score=29.61 Aligned_cols=31 Identities=32% Similarity=0.218 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
.+|.++...++++.++|..+.-+++..|-..
T Consensus 183 ~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~ 213 (414)
T KOG2662|consen 183 VALEAACSFLDSRLSELETEAYPLLDELTNK 213 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677888888999999888888888888653
No 337
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.03 E-value=1.2e+03 Score=27.03 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 515 ACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
.+......+....+.+..++..+..
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 338
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.95 E-value=1.1e+03 Score=26.65 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=45.4
Q ss_pred hchHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 474 LQWDEVQAAIQQVENVINRCLTTHDKL-EASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.+|++-+.+-.++.++=..--.+=..+ +-+....+..++++......+.++.+..+-...|+.+++.++-
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666655543333333333 3333445668899999998888888887777777777776665
No 339
>PRK10698 phage shock protein PspA; Provisional
Probab=22.94 E-value=7.8e+02 Score=25.17 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007137 496 THDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l 541 (616)
+.+.+++.+.+.++ .++..-+.+|.++.++.++...+.....+-
T Consensus 32 ~i~em~~~l~~~r~--alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 32 MIQEMEDTLVEVRS--TSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777744 477778888888888888888887776543
No 340
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=22.81 E-value=8.5e+02 Score=28.38 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=30.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRT 510 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 510 (616)
-.++|+.++..+..+..++++++..+++.++.+.++...
T Consensus 288 l~~~~s~~~~~~~s~~~~~~~i~~~~~~~~e~~t~l~~~ 326 (524)
T COG5391 288 LNESTSKAIHNILSIFSLFEKILIQLESEEESLTRLLES 326 (524)
T ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888887777666543
No 341
>PHA03161 hypothetical protein; Provisional
Probab=22.72 E-value=7.3e+02 Score=24.28 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHhh----------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 482 AIQQVENVINRCLTT----------------HDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLS 539 (616)
Q Consensus 482 ~~~~~~~~~~~r~~~----------------~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~ 539 (616)
+..++..-++||.++ |+.=..+++++-+.+-...++.--..++++.++-++|+..|..
T Consensus 9 i~~~lEa~VnKr~aVS~fDRFG~~s~lF~~Qf~~t~~~lr~~~~~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 9 LCSAFEAEINKKASVSLFDRFGEKNCIFLHQLDHTKKSLIKHENLKKQKSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666667777653 2223444555555555555555555666666666666655543
No 342
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=22.48 E-value=1.2e+03 Score=31.48 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 589 ENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
...+..+.++..+|-.+|+++...|.+
T Consensus 237 q~~~~~l~q~~~eLs~~ie~~~~~ls~ 263 (1822)
T KOG4674|consen 237 QEKNKSLKQQNEELSKKIESLNLELSK 263 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777777777776666543
No 343
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=22.47 E-value=1.1e+03 Score=26.30 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHH----Hhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 483 IQQVENVINRCLTTHDKLEASLRD----LSR-TGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~~~~~~~~~----~~~-~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
.+++-.++..-...++.++..... +.+ ...+..+.++-..+-+.+.+..+.+...++..+
T Consensus 250 a~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~ 314 (412)
T PF04108_consen 250 AQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFH 314 (412)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444445555544444 222 223334444444444444444444444444333
No 344
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=22.41 E-value=9.3e+02 Score=25.38 Aligned_cols=12 Identities=8% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 007137 479 VQAAIQQVENVI 490 (616)
Q Consensus 479 ~~~~~~~~~~~~ 490 (616)
+...++++.+.+
T Consensus 123 adk~~~k~~~~~ 134 (247)
T KOG3976|consen 123 ADKLIEKILSQL 134 (247)
T ss_pred hHHHHHHHHHHH
Confidence 566667766666
No 345
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=22.39 E-value=4.3e+02 Score=24.27 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCCeEEEEEEEEecccccccCcc-----------cccCCceeEEEeecceecCcceeeEEEEEEEec
Q 007137 114 YAVKLPKALGKGDSYTFDVLAVFAHALRPFPEK-----------ITQADIQLVVFQESAFYLTPYVVKVQSLSVKLP 179 (616)
Q Consensus 114 y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~-----------I~Q~e~Q~v~f~~n~y~~SPY~T~~q~t~v~l~ 179 (616)
..+.+ .+-..-++++..|...+.+.-.|+|-- =....-|.+.|+.+..+.++||.-+.+++++|-
T Consensus 34 ~~i~F-~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P~i~~~v~~~L~ 109 (123)
T cd00916 34 VSIDF-TPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYPGISVTVEWELT 109 (123)
T ss_pred EEEEE-EcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCCCeEEEEEEEEE
Confidence 44554 233444556677777777766777721 123345788899888888999988888888773
No 346
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.34 E-value=5.7e+02 Score=25.79 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHH-----------HHHhHhhHHHHHHHHHHHhc
Q 007137 441 MLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENV-----------INRCLTTHDKLEASLRDLSR 509 (616)
Q Consensus 441 ~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~r~~~~~~~~~~~~~~~~ 509 (616)
+|...++++++..++|..+-=-+......=...+ +++...-+++..+ -.+-....+.-.+...+.+.
T Consensus 55 lInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L--~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e 132 (205)
T PRK06231 55 LIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEI--NQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKS 132 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH---HHHHHHHHHHHhcccceeccccc
Q 007137 510 TGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV---AKEKDLQEKVMAKHSTVVDCYEK 581 (616)
Q Consensus 510 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~---~~~~~~~~~~~~~~~~~~~~~e~ 581 (616)
.--..+-+.+.+-+++-..++.++.......|+++ ..+++-.+.+=. ++|.+-++.++.+....++.-|+
T Consensus 133 ~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~e--i~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~~l~~~~~ 205 (205)
T PRK06231 133 ELEKEANRQANLIIFQARQEIEKERRELKEQLQKE--SVELAMLAAEELIKKKVDREDDDKLVDEFIRELEANEK 205 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHcccCCC
No 347
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=22.31 E-value=9.3e+02 Score=25.37 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc-----Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRT-----GD---VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQ 549 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~d---~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~ 549 (616)
.-..+++.+.+++..|..+=+.+-..|.++... ++ ..++..|=..+-++...+.+.=..|...|.++
T Consensus 16 ~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e----- 90 (258)
T cd07680 16 DGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNE----- 90 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 445679999999999999999999999999873 11 45666665555554444444444444555544
Q ss_pred hhHhHHHHHH
Q 007137 550 ILPKVEELVA 559 (616)
Q Consensus 550 ~~~k~~e~~~ 559 (616)
+.+++.+-|+
T Consensus 91 ~~e~~r~~qk 100 (258)
T cd07680 91 DLEKVKNWQK 100 (258)
T ss_pred HHHHHHHHHH
Confidence 6777766665
No 348
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.30 E-value=1e+03 Score=29.11 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 588 SENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
.+.+|+.-..|+.||++=|.+|=.-
T Consensus 731 qe~EiaaAA~KLAECQeTI~sLGkQ 755 (769)
T PF05911_consen 731 QEKEIAAAAEKLAECQETIASLGKQ 755 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999988443
No 349
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=6.4e+02 Score=27.90 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=35.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
.+|.| +++..+++.+++++.--+..+.+-.-.++ +.+-+.+||+++-.+.+.+.-|-++
T Consensus 217 eklR~-r~eeeme~~~aeq~slkRt~EeL~~G~~k---------L~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 217 EKLRR-RREEEMERLQAEQESLKRTEEELNIGKQK---------LVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhHHH---------HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 67788888888887776666666544444 4455566666666655555444333
No 350
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.24 E-value=1e+03 Score=30.16 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHH
Q 007137 485 QVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDL 564 (616)
Q Consensus 485 ~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~ 564 (616)
.+..|..+|-.+-+++.+-.. +++-+..-.+-...++++++.+.-+++.+- -+++..-.|++..+.++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~---~~~e~~~v~~~i~~le~~~~~~~~~~~~~k---------~~l~~~~~El~~~~~~i 720 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK---RRKEVSSVESKIHGLEMRLKYSKLDLEQLK---------RSLEQNELELQRTESEI 720 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 455566666666666665544 333666666666666666665554444332 12455555666665555
Q ss_pred HH
Q 007137 565 QE 566 (616)
Q Consensus 565 ~~ 566 (616)
.+
T Consensus 721 ~~ 722 (1141)
T KOG0018|consen 721 DE 722 (1141)
T ss_pred Hh
Confidence 53
No 351
>PF15456 Uds1: Up-regulated During Septation
Probab=22.11 E-value=6.6e+02 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
..|.+++...+|++++.+|+..+=+-+.
T Consensus 78 ~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 78 KAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566677888888888888877655443
No 352
>PF13864 Enkurin: Calmodulin-binding
Probab=22.08 E-value=4.1e+02 Score=23.47 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=41.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 487 ENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLV 537 (616)
Q Consensus 487 ~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~ 537 (616)
..+++.--.-++.+....+.+.-+-|+-....-|..+|.+++++.+.|+-+
T Consensus 43 ~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 43 QELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555677888888899999999999999999999999999888755
No 353
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.00 E-value=7.2e+02 Score=25.02 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=46.9
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 470 YLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSF 540 (616)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 540 (616)
|++.|. ++.+++.++++++.+.|. ..++-+.-+.+.=.+...|..-..++.+.++....|..+-+.
T Consensus 80 el~~ld-~~i~~l~ek~q~l~~t~s----~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 80 ELQVLD-GKIVALTEKVQSLQQTCS----YVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355554 578888888888887776 566777777777777777777777777777766666655444
No 354
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=21.83 E-value=3.9e+02 Score=29.92 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHH
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVA 559 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~ 559 (616)
.++.+-+...++.|+.+|++=-+..- ..++.-...++.-.+.+ +.+..+..-++.+ -. ..++-++|.+
T Consensus 303 ~~~~eIL~~f~~~R~~~~~kR~~~~l--------~kl~~~l~il~gl~~~~-~~idfIi~vI~~s--~~-~~~~k~~L~~ 370 (426)
T PF00521_consen 303 DSLKEILKEFYEFRLEYYQKRKQYLL--------EKLEERLHILEGLIKAL-NKIDFIIEVIRGS--ID-KNKAKKDLIE 370 (426)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-HTHHHHHHHHHHS--SS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHH-HHHHHHHHHHhcc--cc-chHHHHHHHh
Confidence 34445556667888877765433211 12222222333333333 5666666666664 11 3333333333
Q ss_pred HHHHHHHHHHhcccceeccccccccch---hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 560 KEKDLQEKVMAKHSTVVDCYEKKTGIR---DSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
. +.+ +.||.+++.+ ....++..+++.++++..|++.+...+.
T Consensus 371 ~---L~~----------~q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~ 415 (426)
T PF00521_consen 371 E---LSE----------EQADYLLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILP 415 (426)
T ss_dssp H---HCH----------HHHHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---chH----------HHHHHHHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 3457777765 3444556677777777777777666553
No 355
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.81 E-value=9.9e+02 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 516 CKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
+.+..+++++..+.-..++...+.+|++
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 356
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.56 E-value=7.7e+02 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 007137 590 NRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 590 ~~~~~~~~k~~~~~~~~~~~~ 610 (616)
.+.+.+..|++++..||+.=+
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei 140 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEI 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555554433
No 357
>smart00150 SPEC Spectrin repeats.
Probab=21.23 E-value=4.6e+02 Score=21.44 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007137 594 AQQQKITALRQEVENLLELI 613 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~~~~~ 613 (616)
.++.+..++..+-+.|.+.+
T Consensus 74 ~i~~~~~~l~~~w~~l~~~~ 93 (101)
T smart00150 74 EIEERLEELNERWEELKELA 93 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554443
No 358
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=21.12 E-value=3.1e+02 Score=28.07 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHH----------hHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 480 QAAIQQVENVINR----------CLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 480 ~~~~~~~~~~~~~----------r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+.--+.|.+++.. -.++...+.+.+..|-.+. -..+......++.+.+.+++++..+..+|..-
T Consensus 146 ~~np~~V~~lF~~~~~~~~~~~~~~Gi~~~l~~~l~~~~~~~-~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~ 219 (239)
T PF07195_consen 146 AENPDAVQALFAGDGTKDGTVYSTSGIATRLNDYLDSYTGSS-TGSITSRIDSLNSQIKSLDKQIEDLEERLESK 219 (239)
T ss_pred hhCHHHHHHHHccCccccccccccccHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777888765 5678888999999887433 36777888888999999999988888888763
No 359
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=20.94 E-value=1.1e+03 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHH
Q 007137 484 QQVENVINRCLTTHDKLEASLRDL 507 (616)
Q Consensus 484 ~~~~~~~~~r~~~~~~~~~~~~~~ 507 (616)
+++...++.....|..+..+..++
T Consensus 218 ~~v~~~~~~i~~~~~~~~~~~~k~ 241 (619)
T PRK05658 218 EKVLEKFKALAKQYKKLRKAQEKK 241 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666777777777665
No 360
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.90 E-value=1.4e+03 Score=29.04 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=68.0
Q ss_pred eeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 457 MHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 457 ~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
.++||--.+|.-..+-|++ ..|...-.++..+- ++-..+....+.+..+.. |+ ++.--+.+.++++..+.+..
T Consensus 795 ~~l~fe~~~d~~~~ve~~~-~~v~~~~~~~~~~~-~~e~~~~k~i~e~~~~e~-k~----k~~~~~~~~e~~e~~k~~~~ 867 (1141)
T KOG0018|consen 795 NQLDFEKQKDTQRRVERWE-RSVEDLEKEIEGLK-KDEEAAEKIIAEIEELEK-KN----KSKFEKKEDEINEVKKILRR 867 (1141)
T ss_pred hhhhheecccHHHHHHHHH-HHHHHHHHhHHhhH-HHHHHHHHHHhhHHHHHH-HH----HHHHHHHHHHHHHHHHHHHH
Confidence 6778877777766544321 11222222222222 222333333333344444 44 33333444455555555554
Q ss_pred HHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccch-------------hhhhhHHHHHHHHHHHH
Q 007137 537 VLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-------------DSENRVAAQQQKITALR 603 (616)
Q Consensus 537 ~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-------------~~~~~~~~~~~k~~~~~ 603 (616)
+...+..- +.++.-.=+.+-+++-+.++++ .+.... |..=-+.+|. ....++. ++||+++..
T Consensus 868 ~~~~~tkl--~~~i~~~es~ie~~~~er~~lL-~~ckl~-~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~ 942 (1141)
T KOG0018|consen 868 LVKELTKL--DKEITSIESKIERKESERHNLL-SKCKLE-DIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQ 942 (1141)
T ss_pred HHHHHHHH--hhhhhhhhhHHHHHHHHHHHHH-HHhhhc-cccccccCCCccccceecccccccccHHHH-HHHHHHHHH
Confidence 44444432 3445556667777777777765 332211 1111122333 1445544 788888888
Q ss_pred HHHHHH
Q 007137 604 QEVENL 609 (616)
Q Consensus 604 ~~~~~~ 609 (616)
++++.+
T Consensus 943 ~~l~~~ 948 (1141)
T KOG0018|consen 943 SVLNRI 948 (1141)
T ss_pred HHHHHh
Confidence 887776
No 361
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=20.88 E-value=4.7e+02 Score=25.86 Aligned_cols=32 Identities=25% Similarity=0.139 Sum_probs=23.9
Q ss_pred HhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 507 LSRTGDVQACKAARKAADGLLKELSKELKLVL 538 (616)
Q Consensus 507 ~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~ 538 (616)
....+|.+++..-+..++++.+++.+++..+.
T Consensus 110 ~~~~~d~~~L~~l~~e~~~~~~~~~~~l~~~~ 141 (176)
T PRK03578 110 ARAARDVDALDALLAELRDERRERYAELGALL 141 (176)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888888888888877777665
No 362
>PLN02372 violaxanthin de-epoxidase
Probab=20.77 E-value=5.5e+02 Score=29.12 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=49.1
Q ss_pred heeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHh-HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH--HHH
Q 007137 456 YMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRC-LTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKE--LSK 532 (616)
Q Consensus 456 ~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~--~~~ 532 (616)
+.+.|=|-...|+- +. +....+|+....+-+- ..+-+++++.+.+ .+|..++.++. +.+
T Consensus 349 F~~tDNsCgpep~l-~~-----~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~------------~~~~~~~~~~~~~~~~ 410 (455)
T PLN02372 349 FVRTDNTCGPEPPL-LE-----RLEKDVEEGEKTIVKEARQIEEELEKEVEK------------LGKEEESLFKRVALEE 410 (455)
T ss_pred heeeCCCCCCCchH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 35666666655554 33 4566777775555333 3334444444443 23334444444 444
Q ss_pred HHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccccc
Q 007137 533 ELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG 584 (616)
Q Consensus 533 ~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 584 (616)
.+++|+..+... +.||.|.++++-+.+ ......| ||+.+
T Consensus 411 ~~~~l~~~~~~f---------~~~lskee~~~l~~~-~~~~~~v---ek~f~ 449 (455)
T PLN02372 411 GLKELEQDEENF---------LKELSKEEKELLEKL-KMEASEV---EKLFG 449 (455)
T ss_pred HHHHHHHHHHHH---------HhhhhHHHHHHHHHH-HHHHHHH---HHHhh
Confidence 555444444332 335666666665554 4444444 66544
No 363
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=20.65 E-value=1e+03 Score=25.33 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007137 522 AADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l 541 (616)
....+...+++-+.+++.-.
T Consensus 282 ~~~~~~~~l~~~i~~ll~~~ 301 (457)
T TIGR01386 282 SNLEELERLSRMVSDMLFLA 301 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554433
No 364
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.55 E-value=1e+03 Score=28.50 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCc-------cccchhHhHHHHHHHHHHHHHH
Q 007137 517 KAARKAADGLLKELSKELKLVLSFLQSSS-------AASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 517 ~~~~k~~~~~~k~~~~~~~~~~~~l~~~~-------~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
..+.+=+++++.++.+++.....+|..-- ...+....++++..+++++.++
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666655544443321 1222334455555555555543
No 365
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.39 E-value=1e+03 Score=29.27 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 007137 476 WDEVQAAIQQVENVINRC 493 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~r 493 (616)
|++++....++++.+..+
T Consensus 602 ~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 602 LKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555555
No 366
>PHA02090 hypothetical protein
Probab=20.32 E-value=48 Score=27.82 Aligned_cols=13 Identities=46% Similarity=1.291 Sum_probs=10.0
Q ss_pred CCcceeEE-EeecC
Q 007137 326 GGWRTAFT-IGYGL 338 (616)
Q Consensus 326 GGWk~~Ft-iGYn~ 338 (616)
|||||+-+ +|||.
T Consensus 48 g~~ktna~flgy~i 61 (79)
T PHA02090 48 GGWKTNAEFLGYAI 61 (79)
T ss_pred CCccccceeeeeee
Confidence 99999875 57664
No 367
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=20.13 E-value=7.7e+02 Score=25.59 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHh-------HhhHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccch
Q 007137 479 VQAAIQQVENVINRC-------LTTHDKL-EASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQI 550 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r-------~~~~~~~-~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~ 550 (616)
.......+-.+++++ -..|..| +++...+...+ ...+...-+.+-..+..+.+-+...-..-+ ...-.++
T Consensus 221 ~~~~~~~~~~~~~~~gtgg~~~R~l~a~fL~~~~~~~~~~~-~~~~~~~~~~i~~~W~~~~~~~~k~~~~~~-~~~~~~i 298 (317)
T PF14399_consen 221 LRELLRFLFNMIEKRGTGGGGFRNLYADFLQEAAELLGNPE-LAEAAELFEEIAQLWRQLANLLVKASLSKS-PDDLEEI 298 (317)
T ss_pred HHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHH
Confidence 445555666666666 4455444 33333333222 223333333333333333322222111111 0124678
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 007137 551 LPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 551 ~~k~~e~~~~~~~~~~~~ 568 (616)
++++++|..+|+++.+.|
T Consensus 299 ~~~l~~i~~~E~~~~~~L 316 (317)
T PF14399_consen 299 ADILEKIAELEEELYEAL 316 (317)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998875
Done!