Query 007137
Match_columns 616
No_of_seqs 150 out of 240
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txp_A HnRNP C, heterogeneous 79.8 1.6 5.5E-05 29.4 3.1 24 593-616 2-25 (28)
2 3oja_B Anopheles plasmodium-re 79.0 12 0.00042 40.9 12.0 22 588-609 549-570 (597)
3 3mq9_A Bone marrow stromal ant 77.4 2.3 8E-05 45.5 5.5 23 587-609 447-469 (471)
4 3rkg_A Magnesium transporter M 76.1 12 0.00042 37.8 10.0 113 479-614 128-244 (261)
5 1m1j_C Fibrinogen gamma chain; 74.2 12 0.0004 40.4 9.7 27 587-613 109-135 (409)
6 3na7_A HP0958; flagellar bioge 71.6 74 0.0025 31.5 14.4 29 515-543 57-85 (256)
7 1m1j_B Fibrinogen beta chain; 71.6 51 0.0017 36.0 14.1 25 589-613 174-198 (464)
8 2efr_A General control protein 71.4 23 0.00078 33.2 9.8 63 551-614 69-136 (155)
9 3iee_A Putative exported prote 67.7 20 0.00069 36.3 9.1 117 479-607 90-212 (270)
10 2dfs_A Myosin-5A; myosin-V, in 66.3 35 0.0012 41.1 12.4 9 405-413 745-753 (1080)
11 3rh3_A Uncharacterized DUF3829 63.6 28 0.00095 35.2 9.2 121 479-608 82-205 (264)
12 2fxo_A Myosin heavy chain, car 63.0 27 0.00094 31.3 8.4 54 515-568 31-85 (129)
13 3na7_A HP0958; flagellar bioge 61.7 1.1E+02 0.0038 30.1 13.5 25 589-613 149-173 (256)
14 2x3c_A Toxic extracellular end 61.4 6.8 0.00023 41.1 4.6 16 47-62 38-53 (343)
15 2qyw_A Vesicle transport throu 59.9 36 0.0012 29.4 8.2 81 521-610 18-98 (102)
16 1m1j_B Fibrinogen beta chain; 57.4 67 0.0023 35.1 11.6 25 589-613 167-191 (464)
17 1vcs_A Vesicle transport throu 57.2 51 0.0017 28.4 8.7 78 523-610 10-87 (102)
18 1c1g_A Tropomyosin; contractIl 56.7 1.3E+02 0.0043 28.0 13.8 29 588-616 256-284 (284)
19 3ghg_A Fibrinogen alpha chain; 55.7 40 0.0014 37.3 9.4 17 478-494 50-66 (562)
20 1ykh_B RNA polymerase II holoe 54.8 1.2E+02 0.0042 27.3 12.6 52 514-567 53-104 (132)
21 2d4y_A HAP1, flagellar HOOK-as 53.9 86 0.003 33.6 11.9 121 476-610 21-149 (463)
22 2pih_A Protein YMCA; regulate 52.9 1E+02 0.0035 28.3 10.6 49 494-542 7-57 (151)
23 3ra3_A P1C; coiled coil domain 52.7 15 0.00051 24.2 3.3 17 593-609 10-26 (28)
24 2x3v_A Syndapin I, protein kin 51.5 2E+02 0.0069 28.9 15.0 76 479-559 32-115 (337)
25 1gs9_A Apolipoprotein E, APOE4 51.1 1.3E+02 0.0046 28.0 11.2 63 501-568 45-115 (165)
26 3u0c_A Invasin IPAB, 62 kDa an 50.3 1.7E+02 0.0059 27.7 14.0 72 484-568 96-172 (201)
27 3u9w_A Leukotriene A-4 hydrola 50.3 1.3E+02 0.0045 33.3 13.0 90 31-137 18-107 (608)
28 1fxk_A Prefoldin; archaeal pro 49.7 52 0.0018 27.8 7.6 27 588-614 77-103 (107)
29 3ghg_A Fibrinogen alpha chain; 48.9 47 0.0016 36.8 8.6 30 478-507 65-94 (562)
30 1deq_A Fibrinogen (alpha chain 48.5 1.9E+02 0.0064 30.8 12.8 27 479-508 54-80 (390)
31 1i84_S Smooth muscle myosin he 48.4 30 0.001 41.8 7.8 9 239-247 360-368 (1184)
32 3etw_A Adhesin A; antiparallel 48.3 89 0.0031 28.0 8.9 38 481-518 34-71 (119)
33 1zhc_A Hypothetical protein HP 47.7 84 0.0029 25.7 8.1 62 534-612 5-66 (76)
34 3ghg_C Fibrinogen gamma chain; 46.7 81 0.0028 33.9 9.9 26 588-613 110-135 (411)
35 1yke_B RNA polymerase II holoe 46.2 1.8E+02 0.0062 26.9 11.1 52 514-567 53-104 (151)
36 3oja_B Anopheles plasmodium-re 46.0 70 0.0024 34.8 9.8 24 591-614 559-582 (597)
37 2cly_A ATP synthase B chain, m 45.6 57 0.002 32.0 8.0 34 479-512 82-116 (214)
38 2wps_A Trimeric autotransporte 44.4 67 0.0023 28.0 7.2 60 499-560 17-84 (107)
39 3cvf_A Homer-3, homer protein 43.0 71 0.0024 26.7 7.0 22 547-568 8-29 (79)
40 3hnw_A Uncharacterized protein 42.7 1.9E+02 0.0066 26.2 10.6 79 460-542 18-106 (138)
41 4ioe_A Secreted protein ESXB; 42.2 1.3E+02 0.0045 24.1 9.2 36 479-514 14-49 (93)
42 3vkg_A Dynein heavy chain, cyt 41.8 1.4E+02 0.0046 40.3 12.7 46 499-544 1921-1967(3245)
43 4hpq_C ATG17, KLTH0D15642P; au 41.6 1.4E+02 0.0049 32.0 11.0 19 478-496 205-223 (413)
44 3onj_A T-snare VTI1; helix, HA 41.3 1E+02 0.0034 26.2 8.0 46 522-568 5-50 (97)
45 1i84_S Smooth muscle myosin he 41.0 50 0.0017 39.9 8.2 7 328-334 576-582 (1184)
46 2avr_X Adhesion A; antiparalle 40.7 1.3E+02 0.0045 27.0 8.7 20 515-534 6-25 (119)
47 2nrj_A HBL B protein; enteroto 39.5 2E+02 0.0067 29.9 11.5 29 477-505 86-114 (346)
48 3r2p_A Apolipoprotein A-I; amp 37.6 1.2E+02 0.0041 28.5 8.7 90 518-615 82-184 (185)
49 1wle_A Seryl-tRNA synthetase; 37.3 77 0.0026 34.8 8.3 61 478-542 78-147 (501)
50 3fb2_A Spectrin alpha chain, b 37.3 1.2E+02 0.004 28.5 8.7 21 594-614 195-215 (218)
51 4i0x_B ESAT-6-like protein MAB 37.1 1.4E+02 0.0049 24.9 8.3 66 479-544 16-86 (103)
52 2zqm_A Prefoldin beta subunit 36.2 72 0.0025 27.3 6.4 26 588-613 82-107 (117)
53 3gwk_C SAG1039, putative uncha 35.2 1.2E+02 0.0042 24.6 7.5 49 495-543 29-80 (98)
54 3qne_A Seryl-tRNA synthetase, 35.0 1.1E+02 0.0039 33.4 9.1 42 501-542 60-102 (485)
55 2ve7_C Kinetochore protein NUF 34.2 1.5E+02 0.0051 29.5 9.1 74 478-559 121-194 (250)
56 3kd4_A Putative protease; stru 33.7 4.8E+02 0.017 28.1 14.7 181 30-227 7-204 (506)
57 2dq0_A Seryl-tRNA synthetase; 32.3 1.5E+02 0.005 32.1 9.4 61 479-543 40-101 (455)
58 3cve_A Homer protein homolog 1 31.2 1.3E+02 0.0045 24.6 6.7 19 550-568 5-23 (72)
59 3m9b_A Proteasome-associated A 31.0 40 0.0014 33.9 4.2 22 589-610 74-95 (251)
60 3u1c_A Tropomyosin alpha-1 cha 31.0 1.1E+02 0.0037 26.3 6.6 20 589-608 43-62 (101)
61 1d7m_A Cortexillin I; coiled-c 30.8 2.1E+02 0.0071 24.5 7.9 26 531-558 27-52 (101)
62 1s35_A Beta-I spectrin, spectr 30.5 3.2E+02 0.011 25.0 13.7 86 527-614 116-210 (214)
63 2k6w_A Putative uncharacterize 30.4 2.8E+02 0.0094 24.5 9.3 27 108-134 79-105 (120)
64 3isy_A Bsupi, intracellular pr 30.3 2E+02 0.0068 25.6 8.3 70 46-125 19-93 (120)
65 3vkg_A Dynein heavy chain, cyt 30.0 4.3E+02 0.015 35.7 14.5 10 321-330 1585-1594(3245)
66 3qne_A Seryl-tRNA synthetase, 30.0 65 0.0022 35.3 6.1 27 587-613 82-108 (485)
67 2jee_A YIIU; FTSZ, septum, coi 29.7 1.2E+02 0.004 25.5 6.2 29 588-616 53-81 (81)
68 1wle_A Seryl-tRNA synthetase; 29.2 4E+02 0.014 29.1 12.3 28 586-613 126-153 (501)
69 1wyy_A E2 glycoprotein; membra 28.9 1.7E+02 0.006 27.0 7.7 34 580-613 94-139 (149)
70 2efk_A CDC42-interacting prote 28.5 4.2E+02 0.014 25.8 14.2 64 479-542 19-93 (301)
71 3s84_A Apolipoprotein A-IV; fo 28.1 2.1E+02 0.0073 28.7 9.2 125 480-615 62-194 (273)
72 1m1j_A Fibrinogen alpha subuni 27.8 4.9E+02 0.017 28.4 12.1 29 478-509 51-79 (491)
73 1nfn_A Apolipoprotein E3; lipi 27.6 1.6E+02 0.0056 27.9 7.8 14 594-607 147-160 (191)
74 3g9g_A Suppressor of yeast pro 27.4 2.6E+02 0.0087 28.5 9.7 33 478-510 54-86 (287)
75 3haj_A Human pacsin2 F-BAR; pa 27.2 6E+02 0.02 27.1 15.6 81 472-559 29-117 (486)
76 3aco_A Pacsin2, protein kinase 26.7 4.4E+02 0.015 26.6 11.5 66 479-544 41-114 (350)
77 4e81_A Chaperone protein DNAK; 26.7 2.4E+02 0.0082 27.2 9.0 48 524-572 171-218 (219)
78 2avr_X Adhesion A; antiparalle 26.4 3.5E+02 0.012 24.2 9.8 59 478-536 31-89 (119)
79 2g30_A AP-2 complex subunit be 26.1 1.9E+02 0.0065 28.9 8.3 63 46-143 56-118 (258)
80 3edu_A Beta-I spectrin, spectr 25.9 4E+02 0.014 24.7 12.9 97 511-611 74-175 (218)
81 3gm3_A Protein tyrosine kinase 25.8 1.7E+02 0.006 27.2 7.2 27 518-544 78-104 (153)
82 2dfs_A Myosin-5A; myosin-V, in 25.6 1.2E+02 0.0042 36.4 7.9 26 511-536 914-939 (1080)
83 3edv_A Spectrin beta chain, br 25.6 4.8E+02 0.016 25.5 13.6 46 522-568 223-268 (323)
84 1p9i_A Cortexillin I/GCN4 hybr 25.4 96 0.0033 20.8 3.9 26 516-541 4-29 (31)
85 3oja_A Leucine-rich immune mol 24.8 2.7E+02 0.0091 29.5 9.8 19 593-611 445-463 (487)
86 2oee_A UPF0342 protein YHEA; M 24.7 1.8E+02 0.0061 25.0 6.9 47 496-542 5-53 (117)
87 2yy0_A C-MYC-binding protein; 24.5 1E+02 0.0034 23.7 4.6 34 510-543 18-51 (53)
88 3mq7_A Bone marrow stromal ant 24.5 3.8E+02 0.013 23.9 11.4 61 464-533 8-68 (121)
89 4dnd_A Syntaxin-10, SYN10; str 24.4 3.5E+02 0.012 24.2 8.9 57 478-542 35-91 (130)
90 2dq0_A Seryl-tRNA synthetase; 23.7 4.2E+02 0.014 28.5 11.0 27 587-613 80-106 (455)
91 3u1c_A Tropomyosin alpha-1 cha 23.6 2.2E+02 0.0077 24.2 7.2 30 514-543 26-55 (101)
92 3u59_A Tropomyosin beta chain; 23.3 1.8E+02 0.0062 24.7 6.6 8 557-564 49-56 (101)
93 4dvz_A Cytotoxicity-associated 23.3 2.7E+02 0.0092 29.9 8.9 17 599-615 522-538 (569)
94 3us6_A Histidine-containing ph 23.2 1.7E+02 0.0059 26.6 6.8 66 497-564 71-140 (153)
95 2czy_A Paired amphipathic heli 23.2 1.5E+02 0.005 24.2 5.7 54 477-530 5-59 (77)
96 3lss_A Seryl-tRNA synthetase; 23.2 1.4E+02 0.0048 32.7 7.2 29 585-613 113-141 (484)
97 2ke4_A CDC42-interacting prote 22.9 1.8E+02 0.0063 24.9 6.5 28 588-615 60-87 (98)
98 3kbt_A Beta-I spectrin, spectr 22.9 5.4E+02 0.018 25.1 13.6 111 497-611 167-284 (326)
99 1uk5_A BAG-family molecular ch 22.3 1.6E+02 0.0056 26.0 6.1 23 593-615 81-103 (111)
100 4dvy_P Cytotoxicity-associated 22.1 2.4E+02 0.0081 31.5 8.4 132 467-615 667-798 (876)
101 4adz_A CSOR; transcription, co 22.0 2.9E+02 0.01 25.2 7.9 88 515-610 46-134 (136)
102 1ic2_A Tropomyosin alpha chain 22.0 2.2E+02 0.0075 23.2 6.6 25 589-613 40-64 (81)
103 2v0o_A FCHO2, FCH domain only 21.8 4.6E+02 0.016 25.1 10.1 137 471-615 24-188 (276)
104 3u59_A Tropomyosin beta chain; 21.6 3.4E+02 0.012 22.9 8.0 30 514-543 26-55 (101)
105 1yew_A Particulate methane mon 21.5 6.4E+02 0.022 26.7 11.3 81 33-136 254-336 (382)
106 3mq7_A Bone marrow stromal ant 21.4 3.6E+02 0.012 24.1 8.0 47 489-544 19-65 (121)
107 3uul_A Utrophin; spectrin repe 21.2 3.4E+02 0.012 22.2 9.1 17 594-610 82-98 (118)
108 1ses_A Seryl-tRNA synthetase; 21.2 1.4E+02 0.0047 31.9 6.5 33 510-542 63-95 (421)
109 2nrj_A HBL B protein; enteroto 21.1 3.4E+02 0.011 28.1 9.3 41 523-565 153-193 (346)
110 2jee_A YIIU; FTSZ, septum, coi 20.9 3.3E+02 0.011 22.7 7.4 32 512-543 42-73 (81)
111 3fav_A ESAT-6-like protein ESX 20.8 3.5E+02 0.012 22.1 8.3 63 481-543 14-79 (101)
112 2qup_A BH1478 protein; structu 20.7 3.6E+02 0.012 24.5 8.4 84 525-616 41-136 (145)
113 3rfr_A PMOB; membrane, oxidore 20.6 3.9E+02 0.013 28.6 9.5 81 32-135 287-367 (419)
114 4f7g_B Talin-1; alpha-helix bu 20.6 4.9E+02 0.017 25.4 9.8 130 483-615 30-185 (216)
115 2yy0_A C-MYC-binding protein; 20.3 95 0.0033 23.8 3.7 25 591-615 20-44 (53)
116 3fav_B ESAT-6, 6 kDa early sec 20.2 3.4E+02 0.011 21.7 8.0 61 484-544 15-78 (94)
117 1m1j_C Fibrinogen gamma chain; 20.1 4.1E+02 0.014 28.4 9.8 27 588-614 103-129 (409)
118 3abh_A Pacsin2, protein kinase 20.1 6.3E+02 0.022 24.8 15.7 66 479-544 41-114 (312)
119 3ije_A Integrin alpha-V; integ 20.0 4.7E+02 0.016 30.9 11.3 87 37-138 616-703 (967)
120 2p22_C Protein SRN2; endosome, 20.0 3.7E+02 0.013 25.7 8.6 50 513-568 64-113 (192)
No 1
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=79.83 E-value=1.6 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 593 AAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
+++.+.+..++++||+||+.|+.|
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567778889999999999999864
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.02 E-value=12 Score=40.93 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 007137 588 SENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
+|.++...++++.+++++++.+
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHH
Confidence 3444445555555555555444
No 3
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.38 E-value=2.3 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 007137 587 DSENRVAAQQQKITALRQEVENL 609 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~ 609 (616)
+.|++|..+.+|+++++-+|+.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888764
No 4
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=76.06 E-value=12 Score=37.77 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHH-HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDK-LEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
..++.+.+-+.++.+...++. ...++.++...-+ +.+++. ++..++.|+.+.++.+. +-+-++||
T Consensus 128 LEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~-------~~~L~~-Ll~~~k~L~~~~~kv~~------vr~~leel 193 (261)
T 3rkg_A 128 LESIFINVMSALETDFKLHSQICIQILNDLENEVN-------RLKLRH-LLIKSKDLTLFYQKTLL------IRDLLDEL 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------HHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHH-HHHHhHHHHHHHHHHHH------HHHHHHHH
Confidence 344455555555555444433 2334444443222 122322 23344455555555444 55556666
Q ss_pred HHHHHHHHHHHHhcccceeccccccccch---hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 558 VAKEKDLQEKVMAKHSTVVDCYEKKTGIR---DSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
..-|..+.+.++. +|..... ++|.-+.+.-+..+++.++++++.+.++
T Consensus 194 LddDeDm~~myLT---------~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~ 244 (261)
T 3rkg_A 194 LENDDDLANMYLT---------VKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIK 244 (261)
T ss_dssp HTCHHHHHHTCCS---------SCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHhhcc---------CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555422 2221111 5777778888888888888888888776
No 5
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.23 E-value=12 Score=40.37 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
.+++.+..+++|+++|+++|..|...+
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888888887644
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.64 E-value=74 Score=31.47 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.+....+.++.+..++...++....+|.+
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555555543
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.63 E-value=51 Score=35.99 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+..+..+.+|++.|.+++..+.+..
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556677777777776665543
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.41 E-value=23 Score=33.19 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=33.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhcccceeccccccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 551 LPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-----DSENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 551 ~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++|-......=+.+.+++ ...-+.++-+||.|..- .++.++..-+.|...+.+++|+.+.-|.
T Consensus 69 sqrEd~yEeqIk~L~~kL-KEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKL-KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 44444444456655532 3555666666777777777776665543
No 9
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=67.74 E-value=20 Score=36.33 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
-|.+.+.+..++..|...|..+++ +..|.+.+|.. .++|-++.. .++..++.+.-..+=.. -+.++++.+++.
T Consensus 90 rqnL~q~~~~lf~s~~~~~an~~~-~~sYlkaed~k---kgkKL~~~n-~~l~~~~~e~k~~ifd~--Lsp~aeqAE~~l 162 (270)
T 3iee_A 90 RRNLKQNYTGLFQARTEFYANFDT-YLSYLKKKDVT---NAKKLLDVN-YQLSTQMSEYKQNIFDI--LSPFTEQAELVL 162 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCHH---HHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence 477888889999999999988764 66778888865 555544443 33555555544444332 344788888888
Q ss_pred HHHHHHHHHHHhcccc------eeccccccccchhhhhhHHHHHHHHHHHHHHHH
Q 007137 559 AKEKDLQEKVMAKHST------VVDCYEKKTGIRDSENRVAAQQQKITALRQEVE 607 (616)
Q Consensus 559 ~~~~~~~~~~~~~~~~------~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~ 607 (616)
=.|.=|||.+++.-.. ..|.|.|. ..-++ +.+++|+.+|...++
T Consensus 163 L~DhPLKeqIla~kkm~~~~q~ii~l~~rk----~~~D~-~~l~~~~~eLek~l~ 212 (270)
T 3iee_A 163 LVDNPLKAQIMSVRKMSSTMQSILNLYARK----HRMDG-PRIDLKVAELTKQLD 212 (270)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHTCT----TSCCH-HHHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHh----ccccH-HHHHHHHHHHHHHHH
Confidence 7787778776432211 11222222 13444 567777777766555
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.32 E-value=35 Score=41.08 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=4.8
Q ss_pred CCcEEEEEe
Q 007137 405 GRPVVVLQK 413 (616)
Q Consensus 405 GRpvVvl~~ 413 (616)
|++.|=++.
T Consensus 745 G~TKVF~r~ 753 (1080)
T 2dfs_A 745 GKTKIFFRA 753 (1080)
T ss_dssp CSSEEEECT
T ss_pred ccccchhcc
Confidence 555555543
No 11
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=63.56 E-value=28 Score=35.22 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
-|.+.+.+..+++.|...|..|++ +..|-+.+|.. .-+++...+.+++-++++.-..+=.. -+.++++.+++.
T Consensus 82 r~~L~q~~~~lf~s~~~~yan~~~-~~SYlk~ed~~----~~akL~~~~~~l~~em~e~k~~ifd~--lsp~aeqAE~vl 154 (264)
T 3rh3_A 82 RQNLKQNYAGLFNVRTQFYDNFNK-FLAYKKSKDTA----KTAQLLDENYKLSVELSEYKQVIFDI--LSPLTEQAESEL 154 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence 366777889999999999998875 45566677763 33455556666776776544444332 344788888888
Q ss_pred HHHHHHHHHHHhccc--cee-ccccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 007137 559 AKEKDLQEKVMAKHS--TVV-DCYEKKTGIRDSENRVAAQQQKITALRQEVEN 608 (616)
Q Consensus 559 ~~~~~~~~~~~~~~~--~~~-~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 608 (616)
=.|.=|||.++.--. ..+ +.++ +++-+..-++ +.++-|..+++.++|.
T Consensus 155 L~DhPLKeqIla~kkm~~~~~~~~~-l~~rq~~~D~-~rld~~~~el~~qLea 205 (264)
T 3rh3_A 155 LADEPLKDQIMAMRKMSGTVQSIMN-LYSRKHAMDG-VRIDLKMAELEKELKA 205 (264)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHH-HHTCTTCCCH-HHHHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHHHHH-HHhhccCCcH-HHHHHHHHHHHHHHHH
Confidence 888888887643211 111 0011 1111223445 6677788888877664
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.00 E-value=27 Score=31.29 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccchhHhHHHHHHHHHHHHHHH
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQSSSA-ASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~-~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.....|+.++..+..+.++.+.|+..|+++.. .+++-++...|++...++-+.+
T Consensus 31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 31 KSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999998732 2556666666666555555544
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.70 E-value=1.1e+02 Score=30.12 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+.+++.+.+.++++..+.+.+...|
T Consensus 149 ~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 149 ENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444444444444444333
No 14
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=61.38 E-value=6.8 Score=41.11 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=12.8
Q ss_pred EEEEEEEEeCCCCCce
Q 007137 47 ITSTLKVENEGSEPVS 62 (616)
Q Consensus 47 ~t~~i~vkN~g~~p~~ 62 (616)
..++++|+|.|++|.+
T Consensus 38 ~~vk~tvtN~g~~~~~ 53 (343)
T 2x3c_A 38 VRVNLTLTNTGDKPIR 53 (343)
T ss_dssp CEEEEEEEECSSSCEE
T ss_pred eEEEEEEEeCCCCceE
Confidence 4567788899999975
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=59.86 E-value=36 Score=29.38 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHH
Q 007137 521 KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKIT 600 (616)
Q Consensus 521 k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~ 600 (616)
...|++++.+..+|+..+.++.....+.+--..+.++.+.=.+..|+| .+--..+ .+-....| +..+.|+.
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl-~qMelE~-------r~~p~s~R-~~~~~klr 88 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETL-AEMEEEL-------RYAPLTFR-NPMMSKLR 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HhCCHHHH-HHHHHHHH
Confidence 356788888888888888888542112222334445544445555554 3332222 11123456 77888888
Q ss_pred HHHHHHHHHH
Q 007137 601 ALRQEVENLL 610 (616)
Q Consensus 601 ~~~~~~~~~~ 610 (616)
+.+++++.|=
T Consensus 89 ~Yk~dL~~lk 98 (102)
T 2qyw_A 89 NYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 16
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.35 E-value=67 Score=35.07 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
...|..++.++++++++|..|-..+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666554433
No 17
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=57.25 E-value=51 Score=28.38 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHH
Q 007137 523 ADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITAL 602 (616)
Q Consensus 523 ~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~ 602 (616)
.|++++.+..+|+..+.++...+ +.+=-..+.++.+.=.+..|+| .+--..| .+-....+ ...+.|+.+.
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~-geerk~~i~~ie~~l~EA~ell-~qMelE~-------r~~p~~~R-~~~~~klr~Y 79 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLP-PDEKKQMVANVEKQLEEARELL-EQMDLEV-------REIPPQSR-GMYSNRMRSY 79 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSC-TTTHHHHHHHHHHHHHHHHHHH-HHHHHHH-------TTSCTTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HhCCHHhH-HHHHHHHHHH
Confidence 47889999999999999887642 3333344555555555555654 3333322 11122334 5666666666
Q ss_pred HHHHHHHH
Q 007137 603 RQEVENLL 610 (616)
Q Consensus 603 ~~~~~~~~ 610 (616)
+++++.|-
T Consensus 80 k~dL~~lk 87 (102)
T 1vcs_A 80 KQEMGKLE 87 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 18
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=56.72 E-value=1.3e+02 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 588 SENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
+..++.....++..+..+++++.+.|..|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 256 LEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45555666677777888888888877654
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.75 E-value=40 Score=37.27 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhH
Q 007137 478 EVQAAIQQVENVINRCL 494 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~ 494 (616)
|+|+++.+...=+.+|+
T Consensus 50 rLQglLdkqErDltkrI 66 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI 66 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHH
Confidence 35666666555554444
No 20
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=54.81 E-value=1.2e+02 Score=27.30 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
..|.+..+.+-.++-.-.++|.-|...|=.. ...-.+.+..|.++++++++.
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~--~~see~Q~~ri~~L~~E~~~~ 104 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV--DVSAEEQLRKIDMLQKKLVEV 104 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT--TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555568899999999876 566677888888888888775
No 21
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=53.85 E-value=86 Score=33.62 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHH----hHhhHHHHHHHHHHHhccCchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 007137 476 WDEVQAAIQQVENVINR----CLTTHDKLEASLRDLSRTGDVQACK----AARKAADGLLKELSKELKLVLSFLQSSSAA 547 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~~~~~~d~~~~~----~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~ 547 (616)
|+-....++++++++.. -....+.|-++++.+..+-+..+.. +.-+.+-..++.+.+.|..++..+.
T Consensus 21 ~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n----- 95 (463)
T 2d4y_A 21 LTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVN----- 95 (463)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 56677888899888863 4456778888899888766554321 1223333444444455555554444
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 007137 548 SQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 548 ~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
.++...|.++..+=+++.++ .+....+ |-.-.|.. - ..+..+|+.|..|+-.++
T Consensus 96 ~~i~~~V~~iN~l~~qIa~L--N~qI~~~---~~~~~g~~-~---ndLlDqRD~ll~eLS~~v 149 (463)
T 2d4y_A 96 IAIGSSVAQINNYAKQIANL--NDQISRM---TGVGAGAS-P---NDLLDQRDQLVSELNKIV 149 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHH---C------------CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHh---hccCCCCC-c---hHhHHHHHHHHHHHHhhc
Confidence 44888888888888888875 3333322 21101321 1 235667777777776664
No 22
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=52.94 E-value=1e+02 Score=28.26 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Q 007137 494 LTTHDKLEASLRDLSRTGDVQACKAARKAADG--LLKELSKELKLVLSFLQ 542 (616)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~--~~k~~~~~~~~~~~~l~ 542 (616)
..+|+...+-.+.++.|-...+|+.|++++++ +.+.+=.+...+|..+.
T Consensus 7 ~~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~ 57 (151)
T 2pih_A 7 KDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAV 57 (151)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777777777776653 34444444444444443
No 23
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.75 E-value=15 Score=24.18 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007137 593 AAQQQKITALRQEVENL 609 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~ 609 (616)
..+.||+.+|+++|.+|
T Consensus 10 daleqkiaalkqkiasl 26 (28)
T 3ra3_A 10 DALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47899999999999886
No 24
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=51.45 E-value=2e+02 Score=28.88 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccch
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRT--------GDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQI 550 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--------~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~ 550 (616)
-...++.+..++.+|..+=+.+-..|.++.+. -+..++..+=..+-.+...+.+.-..+...|..+ +
T Consensus 32 g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~-----v 106 (337)
T 2x3v_A 32 GHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNE-----D 106 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 45568999999999999999999999888763 2245566666666666666666555666666554 6
Q ss_pred hHhHHHHHH
Q 007137 551 LPKVEELVA 559 (616)
Q Consensus 551 ~~k~~e~~~ 559 (616)
++.+..+++
T Consensus 107 ~~~l~~~~~ 115 (337)
T 2x3v_A 107 LEKVKNWQK 115 (337)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 25
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=51.06 E-value=1.3e+02 Score=27.99 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHH--------HHHHHHHHHHHHH
Q 007137 501 EASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVE--------ELVAKEKDLQEKV 568 (616)
Q Consensus 501 ~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~--------e~~~~~~~~~~~~ 568 (616)
.+++..+..|.=...+++ .|.....++++.+..++.+|.-- ..++.+++. .|++.-.++|.++
T Consensus 45 ~~~v~ql~~sel~qel~~---~l~~~ld~l~~~~~~l~~~L~P~--t~el~~~l~~~~e~Lr~~L~~d~EelR~~l 115 (165)
T 1gs9_A 45 EQVQEELLSSQVTQELRA---LMDETMKELKAYKSELEEQLTPV--AEETRARLSKELQAAQARLGADMEDVRGRL 115 (165)
T ss_dssp HHHHHHHHSSHHHHHHHH---HHHHHHHHHHHHHHHHTTSCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655544444444 56666777777777777777643 555555544 2444455556654
No 26
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=50.32 E-value=1.7e+02 Score=27.73 Aligned_cols=72 Identities=17% Similarity=0.330 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHH--HH---H
Q 007137 484 QQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVE--EL---V 558 (616)
Q Consensus 484 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~--e~---~ 558 (616)
+.+++.++.-...-+.+++|+++| ++ .++.++++.+++..++++|..-+-+.--..||+ |+ .
T Consensus 96 D~~qTaL~eAQ~AtD~y~~Ainny---------~~----Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~~~~~~~ 162 (201)
T 3u0c_A 96 DKINTLLSETEGLTRDYEKQINKL---------KN----ADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTI 162 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HH----HHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---------hH----HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHHHHhhhh
Confidence 334555555555555556666554 33 344556688899999999987533333344543 33 4
Q ss_pred HHHHHHHHHH
Q 007137 559 AKEKDLQEKV 568 (616)
Q Consensus 559 ~~~~~~~~~~ 568 (616)
|+|..++++-
T Consensus 163 ~~~~~~~~~~ 172 (201)
T 3u0c_A 163 KKDAAVKDRT 172 (201)
T ss_dssp HHHHHHHHHH
T ss_pred hccchhhhhh
Confidence 6777777763
No 27
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=50.25 E-value=1.3e+02 Score=33.34 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=57.0
Q ss_pred EeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCc
Q 007137 31 LSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAA 110 (616)
Q Consensus 31 n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~ 110 (616)
.-+++=+||+.+....-+++|++++..+ ..++..+-. ..|..-++.+++.+ +........ ..+
T Consensus 18 Hy~L~l~vD~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~~---------~~~~~~~~~--~~~ 80 (608)
T 3u9w_A 18 HLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE---------VKYALGERQ--SYK 80 (608)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE---------CCEEECCCC--GGG
T ss_pred EEEEEEEEECCCCEEEEEEEEEEEECCC-CCCEEEEEC-----CCCEEEEEEECCEE---------cceeccccc--ccc
Confidence 3456668899999999999999987653 245555432 23444455554321 112111110 112
Q ss_pred ceEEEEEcCCCCCCCCeEEEEEEEEec
Q 007137 111 LTFYAVKLPKALGKGDSYTFDVLAVFA 137 (616)
Q Consensus 111 ~~~y~V~Lp~pl~pg~~vtl~V~~v~t 137 (616)
.....|.||.|+.+|++++|.|.|..+
T Consensus 81 ~~~l~I~l~~~l~~g~~~~l~I~y~~~ 107 (608)
T 3u9w_A 81 GSPMEISLPIALSKNQEIVIEISFETS 107 (608)
T ss_dssp CEEEEEEEEEEECTTCEEEEEEEEECC
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEEE
Confidence 246899999999999999999998653
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.67 E-value=52 Score=27.76 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++.+|+.+..++..+..+++.+-..|.
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666665555443
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.87 E-value=47 Score=36.75 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDL 507 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 507 (616)
++..+-+++..+...+-..|+.+..-.+.+
T Consensus 65 rINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 65 RINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 455555556666666666665555444444
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.45 E-value=1.9e+02 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLS 508 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 508 (616)
+|+++++...=+..|. +.|.+.|.+|+
T Consensus 54 Lqg~Ldk~er~~~~rI---e~L~~~L~~~s 80 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRI---NKLRDSLFNYQ 80 (390)
T ss_pred HHHHHHHhhhhHHHHH---HHHHHHHHHHH
Confidence 4566655554333333 34444444443
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.40 E-value=30 Score=41.84 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=6.2
Q ss_pred eeeeeEEEE
Q 007137 239 HWGNVQVTE 247 (616)
Q Consensus 239 HWGNIavEE 247 (616)
|.|||.|.+
T Consensus 360 hlGni~f~~ 368 (1184)
T 1i84_S 360 QLGNIVFKK 368 (1184)
T ss_dssp HTTTCCCBC
T ss_pred hhcCceeec
Confidence 777777653
No 32
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=48.30 E-value=89 Score=27.99 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHH
Q 007137 481 AAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKA 518 (616)
Q Consensus 481 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~ 518 (616)
.+.|....-+..-...|..+++.+.+....++...|+.
T Consensus 34 a~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~ 71 (119)
T 3etw_A 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKS 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 33344444444444555555555555555555554443
No 33
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=47.65 E-value=84 Score=25.71 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007137 534 LKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLEL 612 (616)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 612 (616)
-.+++++|+.+ .+..+.-..+=..+|+++..+- .... ..+ ++..+++++-.|+.+|..++..
T Consensus 5 ~~d~I~~Lk~~--d~~f~~L~~eH~~LD~~I~~le--~~~~------------~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 5 FRDEISVLKAN--NPHFDKIFEKHNQLDDDIKTAE--QQNA------------SDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHSTTT--STTHHHHHHHHHHHHHHHHHHH--TTCS------------CHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh--cCCC------------ChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 35677778876 6777777777777777776642 1111 122 6677888888888888887754
No 34
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.69 E-value=81 Score=33.92 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
++.-+.+..+|+++|++++..|....
T Consensus 110 l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 110 LQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445667788888888888776543
No 35
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=46.16 E-value=1.8e+02 Score=26.86 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 567 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~ 567 (616)
..|.+..+.+-.++-.-.++|.-|+..|=.. ...-.+.+..|.++++++++.
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLPg~--~~seeeQ~~ri~~Le~E~~~~ 104 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV--DVSAEEQLRKIDMLQKKLVEV 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS--SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666678999999999876 666777888888888888775
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.96 E-value=70 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 591 RVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 591 ~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
++..+++..+++++|+..+++-++
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555666666666666666554
No 37
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=45.64 E-value=57 Score=32.02 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHH-HHhHhhHHHHHHHHHHHhccCc
Q 007137 479 VQAAIQQVENVI-NRCLTTHDKLEASLRDLSRTGD 512 (616)
Q Consensus 479 ~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~d 512 (616)
..+.++++.+.+ +-|..--+.+.+++..-|...+
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~ 116 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQA 116 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566665555 4455555666666666555543
No 38
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=44.35 E-value=67 Score=28.04 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCccccchhHhHHHHHHH
Q 007137 499 KLEASLRDLSRTGDVQACKAARKAADG--------LLKELSKELKLVLSFLQSSSAASQILPKVEELVAK 560 (616)
Q Consensus 499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~--------~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~ 560 (616)
+++..+..++.++|-.+-+.+--+..+ ....-+..++-|-..+.+- +.|+-|||+|+..+
T Consensus 17 ~~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L--~dDAed~~~~~~~~ 84 (107)
T 2wps_A 17 HIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTL--MKQIEDKIEEILSK 84 (107)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHH--HHHHHHHHHHHHHH
Confidence 667777777777665554443222222 2444456666666666654 66777777777654
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.04 E-value=71 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=15.1
Q ss_pred ccchhHhHHHHHHHHHHHHHHH
Q 007137 547 ASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 547 ~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
..++..|++++-.....+.++|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v 29 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQL 29 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 6667778877777777777776
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.65 E-value=1.9e+02 Score=26.22 Aligned_cols=79 Identities=14% Similarity=0.016 Sum_probs=33.6
Q ss_pred eeEEecCchHHHhhhchHHHHHHHHHHHHHHH----------HhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 007137 460 DMSISKSSAAYLARLQWDEVQAAIQQVENVIN----------RCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKE 529 (616)
Q Consensus 460 D~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~ 529 (616)
+++|.-++ ++ ..|+ +++..+++-..-+. .|+.+--.+.-+=.-++.......+..--+..+.+..+
T Consensus 18 ~Y~i~g~e-~e-e~L~--~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~ 93 (138)
T 3hnw_A 18 VIKLGGYE-SE-EYLQ--RVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYD 93 (138)
T ss_dssp EEEECSCS-CH-HHHH--HHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCC-cH-HHHH--HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666443 33 4453 55555544433333 23333333333333334344444444444444444444
Q ss_pred HHHHHHHHHHHhc
Q 007137 530 LSKELKLVLSFLQ 542 (616)
Q Consensus 530 ~~~~~~~~~~~l~ 542 (616)
|..++..++-++.
T Consensus 94 lK~el~~~~~k~e 106 (138)
T 3hnw_A 94 LKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 41
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=42.20 E-value=1.3e+02 Score=24.09 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchH
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQ 514 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~ 514 (616)
+.....++...-+........|...++.+..+..=.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~ 49 (93)
T 4ioe_A 14 LERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGA 49 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 455556666666666666778888888887776643
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.81 E-value=1.4e+02 Score=40.31 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 499 KLEASLRDLSRT-GDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 499 ~~~~~~~~~~~~-~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
+++.-|.|+..+ ..++..+..-...+.++++.+++...++.++..+
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 2344555444444555555555555555555543
No 43
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=41.57 E-value=1.4e+02 Score=31.95 Aligned_cols=19 Identities=11% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 007137 478 EVQAAIQQVENVINRCLTT 496 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~ 496 (616)
+++.+.+.+.+++|+|..+
T Consensus 205 elA~~L~SLT~HyDqC~~l 223 (413)
T 4hpq_C 205 ELADFLKSFTDHFDKCSAL 223 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777644
No 44
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=41.27 E-value=1e+02 Score=26.24 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 522 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
..|++++.+..+|+..+.++...+ +.+=-..+.++...-.+..|++
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~-ge~Rk~~i~~ie~~ldEA~ell 50 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQP-LSQRNTTLKHVEQQQDELFDLL 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999887542 3333333444444444555543
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.00 E-value=50 Score=39.91 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=3.7
Q ss_pred cceeEEE
Q 007137 328 WRTAFTI 334 (616)
Q Consensus 328 Wk~~Fti 334 (616)
+..+|+|
T Consensus 576 ~~~~F~i 582 (1184)
T 1i84_S 576 DKTEFCI 582 (1184)
T ss_dssp TTCEEEE
T ss_pred CCCcEEE
Confidence 4555654
No 46
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=40.72 E-value=1.3e+02 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007137 515 ACKAARKAADGLLKELSKEL 534 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~ 534 (616)
+.-+.-+.||+++..|-++=
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE 25 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQE 25 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 47
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=39.53 E-value=2e+02 Score=29.93 Aligned_cols=29 Identities=0% Similarity=0.028 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 007137 477 DEVQAAIQQVENVINRCLTTHDKLEASLR 505 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 505 (616)
+++-.+.+++.+..++-...|..|-++++
T Consensus 86 p~Iv~~~~~I~~Y~~~f~syy~~L~~~~d 114 (346)
T 2nrj_A 86 KQLLDTLNGIVEYDTTFDNYYETMVEAIN 114 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555666666666666666666666654
No 48
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=37.63 E-value=1.2e+02 Score=28.47 Aligned_cols=90 Identities=22% Similarity=0.205 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHH----HHHHHHHHhcccceecccccccc-ch----hh
Q 007137 518 AARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKE----KDLQEKVMAKHSTVVDCYEKKTG-IR----DS 588 (616)
Q Consensus 518 ~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~----~~~~~~~~~~~~~~~~~~e~~~~-~~----~~ 588 (616)
..|+.+..+..++...+.+....++.- +-..++++...= .++++++ .+++... =+++.. +. -+
T Consensus 82 ~Lr~~l~kdlee~r~~l~P~~~e~~~~-----~~~~~e~lr~~l~Py~~el~~~~-~~~~e~L--r~~L~p~~e~lr~~l 153 (185)
T 3r2p_A 82 GLRQEMSKDLEEVKAKVQPYLDDFQKK-----WQEEMELYRQKVEPLRAELQEGA-RQKLHEL--QEKLSPLGEEMRDRA 153 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTT--TTTSHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHH-HhhHHHH--HHHHHHHHHHHHHHH
Confidence 356677777777777777777777754 445555555433 3444443 2222211 011111 01 13
Q ss_pred hhhHHHHHHH----HHHHHHHHHHHHHhhhc
Q 007137 589 ENRVAAQQQK----ITALRQEVENLLELIDE 615 (616)
Q Consensus 589 ~~~~~~~~~k----~~~~~~~~~~~~~~~~~ 615 (616)
...+..++.+ .++++++|+.-++.|.|
T Consensus 154 ~~~~e~lk~~l~Py~ee~k~kl~~~leeLke 184 (185)
T 3r2p_A 154 RAHVDALRTHLAPYSDELRQRLAARLEALKE 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 3333444444 46666777776666644
No 49
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.33 E-value=77 Score=34.82 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG---------DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---------d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+-..+..++.++..+|- .+...+.++|.+| |.+++.+..+.+..+.|++.+++.++.++|.
T Consensus 78 ~~r~~~~~~~~l~~~rn----~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKE----AVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 3344445555443 4456666666777777777777766666664
No 50
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=37.29 E-value=1.2e+02 Score=28.52 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007137 594 AQQQKITALRQEVENLLELID 614 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~~~~~~ 614 (616)
.++.+.+++..+-+.|.+.+.
T Consensus 195 ~I~~~~~~l~~rW~~l~~~l~ 215 (218)
T 3fb2_A 195 DISSRRNEVLDRWRRLKAQMI 215 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666665554
No 51
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=37.07 E-value=1.4e+02 Score=24.92 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc--C---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRT--G---DVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~---d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
++.....+.....+-...-+.|+..++.+..+ . ...+|+......+...+++...|.++...|...
T Consensus 16 l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 16 IEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444455556677777777777 3 355677777778887777777777777777764
No 52
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.19 E-value=72 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
++.+|+.+..+++.+..+++.+-+.|
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 53
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=35.17 E-value=1.2e+02 Score=24.64 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 495 TTHDKLEASLRDLSRT---GDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 495 ~~~~~~~~~~~~~~~~---~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.....|...++.+..+ ....+|...-.......+.+.+.|.++...|+.
T Consensus 29 ~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 29 EVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333 234455555555555555555555555555544
No 54
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.05 E-value=1.1e+02 Score=33.39 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=25.7
Q ss_pred HHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 501 EASLRDLSRTG-DVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 501 ~~~~~~~~~~~-d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
...+.++|+.| |.+++.+.-+.+..+.|++..++.++.++|.
T Consensus 60 sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 60 QKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444 4666666667777777777777766666653
No 55
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.19 E-value=1.5e+02 Score=29.52 Aligned_cols=74 Identities=8% Similarity=0.057 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEEL 557 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~ 557 (616)
|...++.-+.+.+.-|-.....+++.++++. +..+..+.+.++.+++.++|..+..++..+ -+++.++..-+
T Consensus 121 Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e------~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~--~te~~p~~k~~ 192 (250)
T 2ve7_C 121 RTSRFLSGIINFIHFREACRETYMEFLWQYK------SSADKMQQLNAAHQEALMKLERLEKEVDED--TTVTIPSAVYV 192 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHSCC---------------CTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHH
Confidence 5677777777777777766667777777644 355666777777788888888877777765 55555554433
Q ss_pred HH
Q 007137 558 VA 559 (616)
Q Consensus 558 ~~ 559 (616)
.+
T Consensus 193 ~q 194 (250)
T 2ve7_C 193 AQ 194 (250)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 56
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=33.72 E-value=4.8e+02 Score=28.13 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=93.1
Q ss_pred EEeEEEEEEEcC--CC-eEEEEEEEEEEeC-CCCC-ceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccC
Q 007137 30 ILSKVDRRIDLT--SQ-IVRITSTLKVENE-GSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKP 104 (616)
Q Consensus 30 ~n~~v~RtIDLs--~~-~Vk~t~~i~vkN~-g~~p-~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~ 104 (616)
+-.....++.+. ++ ..+....++|-|. |-+. ..++.+.+.+. .+++..+.|..-...++..... .=.+.....
T Consensus 7 ~~~~~~~~~~v~~dg~~~~~~~~~ikIl~~~G~~~~~a~i~i~yd~~-~e~l~~~~a~t~~~dGk~i~~~-~~~i~~~~~ 84 (506)
T 3kd4_A 7 EYGKVSKAWTLHADGSQEYRSSMELTLFTHTAMNSTYGESFIVYNPD-FQTLKIHSSYTRQKDGTIVKTP-DNAFVEVLP 84 (506)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEECSHHHHTSGGGEEEEEECTT-TEEEEEEEEEEECTTSCEEECC-GGGEEEECC
T ss_pred eEEEEEEEEEEccCCcEEEEEEEEEEEcChhhhhhccceEEEEeCCC-CcEEEEEEEEEECCCCCEEEcc-hhheEEecc
Confidence 334444455553 33 4566666677664 3332 56666766543 5778888887622222221000 001222211
Q ss_pred ---CC--CCCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEec
Q 007137 105 ---NG--MPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLP 179 (616)
Q Consensus 105 ---~~--~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SPY~T~~q~t~v~l~ 179 (616)
.+ .-++.+.-.+.+| .+++|+.+.+..+... +.| -++ + |....++.+.+|+.....+|..|
T Consensus 85 ~~~~~~~~y~d~k~~~~~~p-~v~~G~iIey~Y~i~~-----~~~-~~~--~-----~~~~~~fq~~~Pv~~~~~~v~~P 150 (506)
T 3kd4_A 85 RFAADAPAYNQLKEMVVVHT-GLELGATIYLDYSIIT-----KPG-YYP--A-----LDINERLQETSPVKECKVSISVP 150 (506)
T ss_dssp GGGTTCGGGTTCEEEEEECC-SCCTTCEEEEEEEEEE-----CTT-SCS--S-----CEEEEECCCSSCEEEEEEEEEEE
T ss_pred ccccccccccCceEEEEEcC-CCCCCcEEEEEEEEEe-----cCC-CCC--c-----ceeeeeccCCceEEEEEEEEEcC
Confidence 00 0134567788887 5899997776554432 222 121 1 11112456788999999999998
Q ss_pred CCCcceeeccC----Cc-eeeC--CeEEeccCccCCCCCccCEEEEEeeccceeE
Q 007137 180 ESRIESYTKLE----NT-KIHG--SEIKYGPYENLPSFSYSPIVVHFESNQPFAV 227 (616)
Q Consensus 180 s~~iesyT~~~----~~-~~~~--~~i~YGP~~~v~pfs~~pi~Vhyenn~Pf~~ 227 (616)
...--.+...+ +. +..+ ..++|- ..|+||+..+|..-...+..|.+.
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~nipa~~~E~~~p~~~~~~p~v~ 204 (506)
T 3kd4_A 151 EGTPLACGLYGSPVKAVEESHDGIKEVHWT-LRNIPASSREAFQPKNREASPHLV 204 (506)
T ss_dssp TTSCCEEEEETCCCCCEEEEETTEEEEEEE-EEEECCCCCCTTCCSSCTTSCEEE
T ss_pred CCCcEEEEecCCCcCceEEecCCeEEEEEE-EccCCCCCCCCCCCcccccCcEEE
Confidence 76544433221 11 1122 345554 578888776554433345555444
No 57
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.34 E-value=1.5e+02 Score=32.10 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRT-GDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
-..+..++.++..+|- .+...+.++|.. .|.+++.+..+.+..+.|++.+++.++.++|..
T Consensus 40 ~r~~~~~~~~l~~~~n----~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 40 WRTKLKEINRLRHERN----KIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 444555555554 566777777777788888888777777777643
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.25 E-value=1.3e+02 Score=24.59 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=10.8
Q ss_pred hhHhHHHHHHHHHHHHHHH
Q 007137 550 ILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 550 ~~~k~~e~~~~~~~~~~~~ 568 (616)
+..|++++-...+.+.+++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v 23 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQL 23 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4556666555555555554
No 59
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.05 E-value=40 Score=33.95 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007137 589 ENRVAAQQQKITALRQEVENLL 610 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~ 610 (616)
...++..++++..|++|++.|.
T Consensus 74 ~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556788888888888888774
No 60
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.00 E-value=1.1e+02 Score=26.26 Aligned_cols=20 Identities=5% Similarity=0.267 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 007137 589 ENRVAAQQQKITALRQEVEN 608 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~ 608 (616)
+.+|++++.|++-+..++|.
T Consensus 43 E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 61
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.81 E-value=2.1e+02 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccCccccchhHhHHHHH
Q 007137 531 SKELKLVLSFLQSSSAASQILPKVEELV 558 (616)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~k~~e~~ 558 (616)
.+++..+++.|.++ +.+-..++.||+
T Consensus 27 k~eL~~~l~~l~~e--~~~R~~~i~el~ 52 (101)
T 1d7m_A 27 KDQLNSLLASLESE--GAEREKRLRELE 52 (101)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34455555555554 444445555555
No 62
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=30.46 E-value=3.2e+02 Score=25.03 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhccccee----ccccccccch-----hhhhhHHHHHH
Q 007137 527 LKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVV----DCYEKKTGIR-----DSENRVAAQQQ 597 (616)
Q Consensus 527 ~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~-----~~~~~~~~~~~ 597 (616)
..++..=|......|.+.+.+. -.+-|+.++++-+.++..+ ..+...+ +..++++... .|..++..++.
T Consensus 116 ~~~~~~Wl~~~E~~l~~~~~g~-~~~~v~~llkkh~~f~~~l-~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~~~l~~ 193 (214)
T 1s35_A 116 AKQAEAILSNQEYTLAHLEPPD-SLEAAEAGIRKFEDFLGSM-ENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIED 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCS-SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3334444444455555554343 3466777777777666654 2222221 1224444322 35566666666
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007137 598 KITALRQEVENLLELID 614 (616)
Q Consensus 598 k~~~~~~~~~~~~~~~~ 614 (616)
+.+.++++++.-...|+
T Consensus 194 rw~~l~~~~~~R~~~L~ 210 (214)
T 1s35_A 194 RHRKNNEKAQEASVLLR 210 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677666666555554
No 63
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=30.44 E-value=2.8e+02 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=21.1
Q ss_pred CCcceEEEEEcCCCCCCCCeEEEEEEE
Q 007137 108 PAALTFYAVKLPKALGKGDSYTFDVLA 134 (616)
Q Consensus 108 ~~~~~~y~V~Lp~pl~pg~~vtl~V~~ 134 (616)
+.+.+.-...|..|+++|+++.+++.+
T Consensus 79 PGG~HvML~gl~~~l~~G~~v~ltL~F 105 (120)
T 2k6w_A 79 PGGYHFMLLGLKRPLKAGEEVELDLLF 105 (120)
T ss_dssp TTTEEEEEEEESSCBCTTCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEE
Confidence 345566677789999999999888764
No 64
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=30.34 E-value=2e+02 Score=25.60 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=40.8
Q ss_pred EEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCc-----ccccccccceeeccCCCCCCcceEEEEEcCC
Q 007137 46 RITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGK-----VKSLSASLPVENVKPNGMPAALTFYAVKLPK 120 (616)
Q Consensus 46 k~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k-----~~~~~~~L~v~~~~~~~~~~~~~~y~V~Lp~ 120 (616)
.+...++++|.++.+.. +.++.+....+.... .+++.- .+-....+....++ +++...|.+++|.
T Consensus 19 ~v~~~ltv~N~s~~~v~---l~f~Sgq~~Df~v~d---~~G~~VwrwS~~~~FtQa~~~~tl~----pGE~~~f~~~w~~ 88 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIE---FQFSTGQKFELVVYD---SEHKERYRYSKEKMFTQAFQNLTLE----SGETYDFSDVWKE 88 (120)
T ss_dssp CEEEEEEEEECSSSCEE---EEESSSCCEEEEEEC---TTCCEEEETTTTCCCCCCCEEEEEC----TTCEEEEEEEESS
T ss_pred eEEEEEEEEcCCCCcEE---EEeCCCCEEEEEEEC---CCCCEEEEccccchhhhhhceEEEC----CCCEEEEEEEeCC
Confidence 56788899999988775 777777654444432 111100 00011122223333 3445789999998
Q ss_pred CCCCC
Q 007137 121 ALGKG 125 (616)
Q Consensus 121 pl~pg 125 (616)
++.||
T Consensus 89 ~~~pG 93 (120)
T 3isy_A 89 VPEPG 93 (120)
T ss_dssp CCCSE
T ss_pred CCCCc
Confidence 88888
No 65
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.05 E-value=4.3e+02 Score=35.70 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=7.3
Q ss_pred CCcccCCcce
Q 007137 321 RYPLFGGWRT 330 (616)
Q Consensus 321 RFPLfGGWk~ 330 (616)
|-.+||.|-.
T Consensus 1585 ~pllf~~f~~ 1594 (3245)
T 3vkg_A 1585 RPILYSNWLT 1594 (3245)
T ss_dssp SSCCCCSSCC
T ss_pred cCcchhhhcc
Confidence 4468999964
No 66
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.00 E-value=65 Score=35.34 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
.+..+|+.+..+..++.++++.++-.|
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555666666777777777666554
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.66 E-value=1.2e+02 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007137 588 SENRVAAQQQKITALRQEVENLLELIDEI 616 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 616 (616)
.+.+.+.+++-+..-.++|++||.-+|++
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45566677888888888899998888764
No 68
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.16 E-value=4e+02 Score=29.10 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=19.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 586 RDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 586 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+.+.++|+.+..+..++.++++.++-.|
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566777777777777777777654
No 69
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=28.89 E-value=1.7e+02 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=15.1
Q ss_pred cccccch------------hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 580 EKKTGIR------------DSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 580 e~~~~~~------------~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+|++.|| .++++...+++-.++|.+=|++|=++|
T Consensus 94 DRLItGRl~s~nltL~eI~~Le~s~~~L~k~~~eLq~~IdnlN~TL 139 (149)
T 1wyy_A 94 DRLITGGRGGSDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESL 139 (149)
T ss_dssp --------------CCCCTTCCCCCCCCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6667776 356664445555666666666654443
No 70
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=28.49 E-value=4.2e+02 Score=25.76 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC-------ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRTG-------DV----QACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-------d~----~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
-..+++.+...+.+|..+=+.+-..|.++.+.- +. .++..+=..+-.+...+.+.-..+...|.
T Consensus 19 g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~~a~~L~ 93 (301)
T 2efk_A 19 GLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLS 93 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999988888886542 21 14555545555544444444444444443
No 71
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.15 E-value=2.1e+02 Score=28.72 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccCccccchh
Q 007137 480 QAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQAC--------KAARKAADGLLKELSKELKLVLSFLQSSSAASQIL 551 (616)
Q Consensus 480 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~--------~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~ 551 (616)
..+-+++..+-.+-.-+.+++.+.++. |+..+ ...|++++....++...+.+....+++. +.
T Consensus 62 ~~~~~~~eelr~kL~p~~~el~~~l~~-----~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k-----~~ 131 (273)
T 3s84_A 62 TQVNTQAEQLRRQLTPYAQRMERVLRE-----NADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVK-----ID 131 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHH-----HH
Q ss_pred HhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 552 PKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 552 ~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
.++++|...=.-+-+.+-.+....+...-..+.-..-+-+ ..++...++|+++++-..+.+.+
T Consensus 132 ~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~-~~l~~~~eeLr~~L~p~ae~lr~ 194 (273)
T 3s84_A 132 QTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELK-ARISASAEELRQRLAPLAEDVRG 194 (273)
T ss_dssp HHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 72
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.79 E-value=4.9e+02 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSR 509 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 509 (616)
|+|+++.+...=+..|+ ++|-+.|.+|++
T Consensus 51 rLqglL~kqerdv~~rI---~kLkn~L~~~s~ 79 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRI---DNIRQQLADSQN 79 (491)
T ss_dssp THHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHH---HHHHHHHHHHHh
Confidence 45788888777777776 355566666544
No 73
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.59 E-value=1.6e+02 Score=27.92 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 007137 594 AQQQKITALRQEVE 607 (616)
Q Consensus 594 ~~~~k~~~~~~~~~ 607 (616)
.+.++.++|++++.
T Consensus 147 kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 147 RLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 33444444444443
No 74
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=27.39 E-value=2.6e+02 Score=28.45 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRT 510 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 510 (616)
++..++..+...+..|..+=+.+-+.|+++.+.
T Consensus 54 ~~k~i~keL~~f~kERa~IEe~YakqLrkLakk 86 (287)
T 3g9g_A 54 QVKLLNKDFYLLFKELANLKRNYAQQLRKIIAE 86 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566678999999999999999999999988774
No 75
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=27.18 E-value=6e+02 Score=27.13 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=58.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 472 ARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRT--------GDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--------~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.|++ .-...++++..++.+|..+=+.+-..|.++.+. -+..+|..+=..+-.+...+.+.-..+...|+.
T Consensus 29 ~r~~--~g~~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~ 106 (486)
T 3haj_A 29 KRID--DGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMN 106 (486)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 345668999999999999999999999888763 234577777777777777777777777777765
Q ss_pred CccccchhHhHHHHHH
Q 007137 544 SSAASQILPKVEELVA 559 (616)
Q Consensus 544 ~~~~~~~~~k~~e~~~ 559 (616)
+ +++.+...++
T Consensus 107 ~-----v~~~l~~~~~ 117 (486)
T 3haj_A 107 D-----DFEKIKNWQK 117 (486)
T ss_dssp T-----HHHHHHHHHH
T ss_pred h-----hHHHHHHHHH
Confidence 5 5565555543
No 76
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=26.71 E-value=4.4e+02 Score=26.62 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRT--------GDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--------~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
-..+++++..++..|..+=+.+-..|.++.+. -+..++..+=..+-.+...+.+.-..+...|.++
T Consensus 41 g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~ 114 (350)
T 3aco_A 41 GHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMND 114 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999998888888763 3455677666666666666655555555555543
No 77
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=26.69 E-value=2.4e+02 Score=27.22 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcc
Q 007137 524 DGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKH 572 (616)
Q Consensus 524 ~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~ 572 (616)
+.+...+.+.+.++..-|..++ ..++-.|..||++.=..+..+++++|
T Consensus 171 ~~~k~~i~~~l~~~~~~L~~~~-~~~i~~~~~~L~~~~~~i~~~~~~~~ 218 (219)
T 4e81_A 171 ADDKTAIESALTALETALKGED-KAAIEAKMQELAQVSQKLMEIAQQQH 218 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHTHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455566667777777777652 45667777777776666666655443
No 78
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.40 E-value=3.5e+02 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
+-..+.|....-+......|.++++.+.++.+.++..-|+..=+.+-.+|+++-++|..
T Consensus 31 qeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 31 EERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777888888999999999988888887777666666666665444433
No 79
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=26.14 E-value=1.9e+02 Score=28.86 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=42.1
Q ss_pred EEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCcceEEEEEcCCCCCCC
Q 007137 46 RITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKG 125 (616)
Q Consensus 46 k~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~~~~y~V~Lp~pl~pg 125 (616)
++..++++.|....|.+.|.+.+...-. -+.+... ..+|.||+||
T Consensus 56 ~i~l~l~~~N~s~~~is~faIQfNkNsF------------------------GL~p~~~-----------~~~~~~L~pg 100 (258)
T 2g30_A 56 HIYMEMNFTNKALQHMTDFAIQFNKNSF------------------------GVIPSTP-----------LAIHTPLMPN 100 (258)
T ss_dssp EEEEEEEEEECSSSCBCCCEEEECCBTT------------------------CCEESSC-----------CCCCSCBCTT
T ss_pred EEEEEEEEecCCccceeeeEEEEccccc------------------------CcccCcc-----------ccCCCccCCC
Confidence 4458889999888888877776644321 1111110 1257789999
Q ss_pred CeEEEEEEEEeccccccc
Q 007137 126 DSYTFDVLAVFAHALRPF 143 (616)
Q Consensus 126 ~~vtl~V~~v~t~~l~P~ 143 (616)
++.+..|-..+++...+.
T Consensus 101 qs~~v~lpl~~~~~~~~~ 118 (258)
T 2g30_A 101 QSIDVSLPLNTLGPVMKM 118 (258)
T ss_dssp CEEEEEEEEESCSCBCCC
T ss_pred CcEEEEEeeecCCcccCC
Confidence 999999998887766644
No 80
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=25.94 E-value=4e+02 Score=24.69 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccc----eeccccccccch
Q 007137 511 GDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHST----VVDCYEKKTGIR 586 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~ 586 (616)
.+....+.-...++..+..|.+.+..-...|... -++..--.++.....-+.++- ...+. -.+..+.+...-
T Consensus 74 ~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a---~~~~~F~~~~~e~~~Wl~ek~-~~l~~~~g~dl~~v~~l~~~h 149 (218)
T 3edu_A 74 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAAS---YDLHRYFYTGAEILGLIDEKH-RELPEDVGLDASTAESFHRVH 149 (218)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HCCC-------------CCSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhCCCccCCCHHHHHHHHHHH
Confidence 4566677777788888888888877777777652 111111112222222222221 10000 000112221111
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 587 -DSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 587 -~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
-.+++|+.++.+++.|.++.+.|+.
T Consensus 150 ~~~e~dL~~~~~~v~~l~~~a~~L~~ 175 (218)
T 3edu_A 150 TAFERELHLLGVQVQQFQDVATRLQT 175 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888777777664
No 81
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=25.75 E-value=1.7e+02 Score=27.20 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 518 AARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 518 ~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
++++.+|..+|-|++++.+|.+++|.-
T Consensus 78 s~~~EIema~k~L~kDM~eLIs~MkLA 104 (153)
T 3gm3_A 78 SSRTEIEGTQKLLNKDLAELINKMRLA 104 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999863
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.63 E-value=1.2e+02 Score=36.41 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 007137 511 GDVQACKAARKAADGLLKELSKELKL 536 (616)
Q Consensus 511 ~d~~~~~~~~k~~~~~~k~~~~~~~~ 536 (616)
+.++.++..++.++.+..+|+..+.+
T Consensus 914 r~~~~l~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 914 RSVERYKKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp --------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555543
No 83
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=25.59 E-value=4.8e+02 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 522 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 522 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
.+..+.+++..=|.+....|.+.+.+.++ +-++.+++.-+++++-+
T Consensus 223 ~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~-~~~e~ll~~h~~l~~ei 268 (323)
T 3edv_A 223 RFFSMVRDLMLWMEDVIRQIEAQEKPRDV-SSVELLMNNHQGIKAEI 268 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCCCH-HHHHHHHHHHHHHHHHH
Confidence 34556666666777777777765444443 45666666666666654
No 84
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.36 E-value=96 Score=20.83 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007137 516 CKAARKAADGLLKELSKELKLVLSFL 541 (616)
Q Consensus 516 ~~~~~k~~~~~~k~~~~~~~~~~~~l 541 (616)
+++--.++|++.|.+..++.+++++.
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566777777777777766654
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.77 E-value=2.7e+02 Score=29.50 Aligned_cols=19 Identities=5% Similarity=-0.102 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007137 593 AAQQQKITALRQEVENLLE 611 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~ 611 (616)
..+.++.+.++.+++.+-.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhh
Confidence 3333344444444444433
No 86
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=24.71 E-value=1.8e+02 Score=24.96 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Q 007137 496 THDKLEASLRDLSRTGDVQACKAARKAADG--LLKELSKELKLVLSFLQ 542 (616)
Q Consensus 496 ~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~--~~k~~~~~~~~~~~~l~ 542 (616)
+|+...+-.+.++.|-....|+.|++.+++ +.+.+=.+...++..+.
T Consensus 5 I~d~A~eL~~~I~~s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~ 53 (117)
T 2oee_A 5 FYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQ 53 (117)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHSHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 556666666667778888888888888764 34444444444444443
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.53 E-value=1e+02 Score=23.67 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=27.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 510 TGDVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 510 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.-|+.+++.-...+.+++.+|.+++.++.++|..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888888763
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.51 E-value=3.8e+02 Score=23.92 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred ecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Q 007137 464 SKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKE 533 (616)
Q Consensus 464 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~ 533 (616)
..++|.. .-+ +++.=+..+..++.+.+.--+ +.+++- ---.++|+.+-.++...+++....
T Consensus 8 ANSeAC~-dGL---rAq~ECrN~T~lLq~qLTqAQ---e~l~~~--eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 8 ANSEAAR-DGL---RAVMEARNVTHLLQQELTEAQ---KGFQDV--EAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp ---CHHH-HHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHH-HHH---HHHHHHHhHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455653 555 567777888888877665433 112211 112456777766666666554444
No 89
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.36 E-value=3.5e+02 Score=24.24 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 478 EVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 478 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
+|+..++.+..++.+...+-+. ..+-....++.+++.|...++++...|.+|...+.
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~--------~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQE--------SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788777777777655433221 11122346777777777777777777777776665
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.66 E-value=4.2e+02 Score=28.49 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 587 DSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 587 ~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
.+.++|+.+..+..++.++++.++-.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455666666777777777776554
No 91
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.55 E-value=2.2e+02 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
..+..-.|.++.+...+..++.+|+.+++.
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666677777777777777777777764
No 92
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.29 E-value=1.8e+02 Score=24.70 Aligned_cols=8 Identities=38% Similarity=0.189 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 007137 557 LVAKEKDL 564 (616)
Q Consensus 557 ~~~~~~~~ 564 (616)
|+++-+.+
T Consensus 49 L~kKiq~l 56 (101)
T 3u59_A 49 LQKKLKGT 56 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 93
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=23.29 E-value=2.7e+02 Score=29.89 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhc
Q 007137 599 ITALRQEVENLLELIDE 615 (616)
Q Consensus 599 ~~~~~~~~~~~~~~~~~ 615 (616)
-++|.++|+.|-.+++|
T Consensus 522 nQELtqKIdNLNQAVSE 538 (569)
T 4dvz_A 522 NQKVTDKVDNLNQAVSV 538 (569)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35677777777776665
No 94
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.23 E-value=1.7e+02 Score=26.63 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccCch---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCccccchhHhHHHHHHHHHHH
Q 007137 497 HDKLEASLRDLSRTGDV---QACKAARKAADGLLKELS-KELKLVLSFLQSSSAASQILPKVEELVAKEKDL 564 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~d~---~~~~~~~k~~~~~~k~~~-~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~ 564 (616)
++.+....|.+|.+--. ..+......+|..-++-+ ..+..+...|+.+ -..+..+++.+.+++++.
T Consensus 71 ~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e--~~~v~~~L~~~~~le~q~ 140 (153)
T 3us6_A 71 FKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQE--YLLVKNKLETLLRLEQQI 140 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 56667777777765332 344445555555444322 2355666666665 556666666666666554
No 95
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.21 E-value=1.5e+02 Score=24.18 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHH
Q 007137 477 DEVQAAIQQVENVINRCLTTHDKLEASLRDLSR-TGDVQACKAARKAADGLLKEL 530 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~d~~~~~~~~k~~~~~~k~~ 530 (616)
+.+..-+.+|..-+......|++|-+-+++|++ ..|+...-+--+.+=..|.+|
T Consensus 5 ~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdL 59 (77)
T 2czy_A 5 EDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDL 59 (77)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHH
Confidence 456777888888887778999999999999985 557666555555555555544
No 96
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.16 E-value=1.4e+02 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 585 IRDSENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 585 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
++.+..+|+.+..+..++.++++.++-.|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777888888888888888888887665
No 97
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.90 E-value=1.8e+02 Score=24.93 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 588 SENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
++.+|+...+|++.|+.++..+-..|+|
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777666666554
No 98
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=22.86 E-value=5.4e+02 Score=25.08 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhccc-
Q 007137 497 HDKLEASLRDLSRTG--DVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHS- 573 (616)
Q Consensus 497 ~~~~~~~~~~~~~~~--d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~- 573 (616)
.+.+.+..+.+..++ +....+.-...++..++.+.+.+..-...|+.. .++..-..++.....-+.++- ....
T Consensus 167 v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a---~~~~~f~~~~~e~~~Wl~ek~-~~L~~ 242 (326)
T 3kbt_A 167 VDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAAS---YDLHRYFYTGAEILGLIDEKH-RELPE 242 (326)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhCcc
Confidence 344444445554443 455566667778888888888888887777753 122221222222222222221 1100
Q ss_pred ---ceeccccccccc-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007137 574 ---TVVDCYEKKTGI-RDSENRVAAQQQKITALRQEVENLLE 611 (616)
Q Consensus 574 ---~~~~~~e~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~ 611 (616)
......+.++.. +..+++|+.++.+++.|..+-+.|+.
T Consensus 243 ~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~ 284 (326)
T 3kbt_A 243 DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQT 284 (326)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111222221 13677777778888777777766654
No 99
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=22.30 E-value=1.6e+02 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 007137 593 AAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 593 ~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
....++|.+++.+|.++|+.||.
T Consensus 81 ~~vR~aRK~aVk~iQ~~l~~LD~ 103 (111)
T 1uk5_A 81 ADVRQARRDGVRKVQTILEKLEQ 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999984
No 100
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=22.12 E-value=2.4e+02 Score=31.52 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred chHHHhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 007137 467 SAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSA 546 (616)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~ 546 (616)
+|+.+|| +.+..+.+..+-.....-.+.+..+|.+|..+ |..-|-.-+.++...++.+++|...+|.-.-
T Consensus 667 ea~kear-----~~a~~~nlkGI~~ElsdKlENiNknLkDf~ks-----fde~KNGKNkDFSKv~etlk~L~~SvKDlgI 736 (876)
T 4dvy_P 667 EANRDAR-----AIAYTQNLKGIKRELSDKLEKISKDLKDFSKS-----FDEFKNGKNKDFSKAEETLKALKGSVKDLGI 736 (876)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCC----------CCHHHHHHHHHHHSTT
T ss_pred hhhhHHH-----HHHhccchhhhhHHHHHHHHHHHHHHHhhccc-----chhhhCCCcccHHHHHHHHHHHHhHHHHhcc
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 547 ASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 547 ~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
..++.+||.-|.+.=.+.+--=..-.+.+ |+. +...++- .--...-+|+.+||+.|-.++.|
T Consensus 737 NqEv~dKIDNLNQAlsefKnGKngDFSkV----eQA--lsDLknS-kkdLsrNQELtqKVdNLNQAVsE 798 (876)
T 4dvy_P 737 NPEWISKVENLNAALNEFKNGKNKDFSKV----TQA--KSDLENS-VKDVIINQKVTDKVDNLNQAVSV 798 (876)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-----CHHH----HHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCchhh----hhh--hhHHHhh-HHhhhhhHHHHHHHHHHHHHHHH
No 101
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=22.04 E-value=2.9e+02 Score=25.22 Aligned_cols=88 Identities=10% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccccc-chhhhhhHH
Q 007137 515 ACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG-IRDSENRVA 593 (616)
Q Consensus 515 ~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~ 593 (616)
.+...||++-.++|-..-++..++.-+..+.-+.|+.-.+.-+.+.=..+...++..|... |....+. |. .
T Consensus 46 g~~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~--CV~~ai~~g~------~ 117 (136)
T 4adz_A 46 GYHKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRH--CVADAALKGG------T 117 (136)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCH------H
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCC------h
Confidence 3456788899999999999999999998876678888888888776666555566666542 2222111 21 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007137 594 AQQQKITALRQEVENLL 610 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~~ 610 (616)
...+|++|+..-|..++
T Consensus 118 e~~ekI~El~~~I~k~~ 134 (136)
T 4adz_A 118 EIDAKVEEATKAIGRLL 134 (136)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 12355666666665554
No 102
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.03 E-value=2.2e+02 Score=23.22 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137 589 ENRVAAQQQKITALRQEVENLLELI 613 (616)
Q Consensus 589 ~~~~~~~~~k~~~~~~~~~~~~~~~ 613 (616)
+.+|.++++|++.+..++|..-+.|
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666554443
No 103
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.75 E-value=4.6e+02 Score=25.12 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HhhhchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 007137 471 LARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTG----DVQACKAARKAADGLLKELSKELKLVLSFLQSSSA 546 (616)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~ 546 (616)
..|+ +.-...++.+.+.+.+|..+=+.+-..|.++.+.- ...+|..+=..+-.+...+.+.-..+...|...
T Consensus 24 ~~~~--~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~~~~gs~~~~w~~~~~~~e~~a~~h~~~a~~l~~~-- 99 (276)
T 2v0o_A 24 YHNM--KHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQEL-- 99 (276)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSSGGGHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred ccchhHhHHHHHHHHHHHHH------HHHhcccceecccccc------------------ccchhhhhhHHHHHHHHHHH
Q 007137 547 ASQILPKVEELVAKEKDLQE------KVMAKHSTVVDCYEKK------------------TGIRDSENRVAAQQQKITAL 602 (616)
Q Consensus 547 ~~~~~~k~~e~~~~~~~~~~------~~~~~~~~~~~~~e~~------------------~~~~~~~~~~~~~~~k~~~~ 602 (616)
...+..-..+..+.-|..++ ++...........+|. .+++.++-- +.|.+.+
T Consensus 100 ~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~----~~k~~ka 175 (276)
T 2v0o_A 100 IKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKA----AVKSKKA 175 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH----HHHHHHH
Q ss_pred HHHHHHHHHhhhc
Q 007137 603 RQEVENLLELIDE 615 (616)
Q Consensus 603 ~~~~~~~~~~~~~ 615 (616)
+++-..-++.+.+
T Consensus 176 ~~~Y~~~v~~~n~ 188 (276)
T 2v0o_A 176 TDTYKLYVEKYAL 188 (276)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 104
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.55 E-value=3.4e+02 Score=22.93 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 514 QACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 514 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
..+..-.|.++.+...+..++..|+.+++.
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~ 55 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKG 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555566666666666666666666664
No 105
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=21.47 E-value=6.4e+02 Score=26.71 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCeEEEEEEEEEEeCCCCCce--EEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCc
Q 007137 33 KVDRRIDLTSQIVRITSTLKVENEGSEPVS--EVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAA 110 (616)
Q Consensus 33 ~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~--~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~ 110 (616)
-..-+.++-+.- .+.++++.|.|++|+. +| ...++.|+.+.+...+. .-+-+.+. ..+
T Consensus 254 v~~A~Y~vpgR~--l~~~~~VtN~g~~pvrlgeF-------~tA~vrFln~~~~~~~~-------~~P~~lla----~~g 313 (382)
T 1yew_A 254 VEDATYRVPGRA--MRMKLTITNHGNSPIRLGEF-------YTASVRFLDSDVYKDTT-------GYPEDLLA----EDG 313 (382)
T ss_dssp EEEEEEESSCSE--EEEEEEEEECSSSCEEEEEE-------ECSSCEEECTTTCCCCS-------CCCGGGEE----TTC
T ss_pred eeccEEecCCcE--EEEEEEEEcCCCCceEeeeE-------EeccEEEeCCcccccCC-------CChHHhhc----cCC
Confidence 334577777774 4566788899999964 33 34567777432210000 00000000 011
Q ss_pred ceEEEEEcCCCCCCCCeEEEEEEEEe
Q 007137 111 LTFYAVKLPKALGKGDSYTFDVLAVF 136 (616)
Q Consensus 111 ~~~y~V~Lp~pl~pg~~vtl~V~~v~ 136 (616)
..|+=+.|++||++.++.|+..=
T Consensus 314 ---L~vsd~~pI~PGETr~~~v~a~d 336 (382)
T 1yew_A 314 ---LSVSDNSPLAPGETRTVDVTASD 336 (382)
T ss_dssp ---EEESCCSCBCTTCEEEEEEEEEC
T ss_pred ---ceeCCCCCcCCCceeEEEEEeeh
Confidence 36666789999999999998763
No 106
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.40 E-value=3.6e+02 Score=24.07 Aligned_cols=47 Identities=6% Similarity=0.125 Sum_probs=22.0
Q ss_pred HHHHhHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 489 VINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 489 ~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
....|..+=++++..|..= +..-...+++...-++.+..|.+.|+.+
T Consensus 19 Aq~ECrN~T~lLq~qLTqA---------Qe~l~~~eaQAaTCNqTV~tL~~SL~~e 65 (121)
T 3mq7_A 19 AVMEARNVTHLLQQELTEA---------QKGFQDVEAQAATANHTVMALMASLDAE 65 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555441 1122223444444555555555555544
No 107
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.20 E-value=3.4e+02 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007137 594 AQQQKITALRQEVENLL 610 (616)
Q Consensus 594 ~~~~k~~~~~~~~~~~~ 610 (616)
.++.|+.++.++-+.|.
T Consensus 82 ~i~~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 82 EIQEQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.18 E-value=1.4e+02 Score=31.95 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=21.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007137 510 TGDVQACKAARKAADGLLKELSKELKLVLSFLQ 542 (616)
Q Consensus 510 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~ 542 (616)
..|.+++.+..+.+..+.|++.+++.++.++|.
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 63 PEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777776666665
No 109
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.08 E-value=3.4e+02 Score=28.13 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHH
Q 007137 523 ADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQ 565 (616)
Q Consensus 523 ~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~ 565 (616)
++++...+......++..|+++ +.++.+.=.||..+.++++
T Consensus 153 l~~d~~~f~~~~~~l~~~L~~~--~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 153 IGHDVRAFGSNKELLQSILKNQ--GADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHTGGGC
T ss_pred HHhhHhhHHhHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHH
Confidence 3333333444444555555554 4444333334444333333
No 110
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.89 E-value=3.3e+02 Score=22.71 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 512 DVQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 512 d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
+.+...+.|..++.+...|.++....+.+|.+
T Consensus 42 e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 42 EVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777888888888888887777775
No 111
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=20.78 E-value=3.5e+02 Score=22.10 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007137 481 AAIQQVENVINRCLTTHDKLEASLRDLSRTGD---VQACKAARKAADGLLKELSKELKLVLSFLQS 543 (616)
Q Consensus 481 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~d---~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 543 (616)
.....+.....+-....+.++..++.+..+.. ..+|+..-...+...+++...|.++...|..
T Consensus 14 ~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~ 79 (101)
T 3fav_A 14 QEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQ 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555677777777777764 3456666667777777777777777777765
No 112
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=20.71 E-value=3.6e+02 Score=24.54 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecccccccc----ch-hhhhhHHHHHHHH
Q 007137 525 GLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG----IR-DSENRVAAQQQKI 599 (616)
Q Consensus 525 ~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~-~~~~~~~~~~~k~ 599 (616)
.+++++=.+|.+.-.+|..+ +-+.+|.++-+.+++.+ .......=.+++.-+ |+ -+=.-|+..-+|+
T Consensus 41 e~L~~ll~~I~~~G~rL~~~-------~t~~~l~~YK~lVk~Fl-~~~v~~~~~l~~~~~~~r~gr~r~y~iV~~ID~kL 112 (145)
T 2qup_A 41 ERLQALMSKIDDQGKLLSET-------RTIEELRKYKELVKEFV-GDAVELGLRLEERRGFNRRGRTKIYKIVKEVDRKL 112 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHH-HHHHHHHHHHHTC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHH-HHHHHHHheehhhcccCCCCCeeEEeehhHHhHHH
Confidence 44555555565555555543 33778888888888864 322211101122222 43 1222234556667
Q ss_pred HHHHHHH-------HHHHHhhhcC
Q 007137 600 TALRQEV-------ENLLELIDEI 616 (616)
Q Consensus 600 ~~~~~~~-------~~~~~~~~~~ 616 (616)
.+|.+++ =+||+.++||
T Consensus 113 ~eLt~~ll~~ek~~i~iL~~I~EI 136 (145)
T 2qup_A 113 LDLTDAVLAKEKKGLDILNMVGEI 136 (145)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHhHHHHHHhhh
Confidence 7777665 2467777765
No 113
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=20.61 E-value=3.9e+02 Score=28.64 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred eEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCcc
Q 007137 32 SKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAAL 111 (616)
Q Consensus 32 ~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~~ 111 (616)
+-..-+.++-+.- .+.+++++|.|++|+. |-+-...++.++.+.+...+. .....|-. +.+.
T Consensus 287 ~v~~A~Y~vpgR~--l~~~~~VtN~g~~pvr-----lgeF~tA~vrFlnp~v~~~~~---~~p~~l~a--------~~GL 348 (419)
T 3rfr_A 287 ELNGGVYKVPGRE--LTINVKVKNGTSQPVR-----LGEYTAAGLRFLNPTVFTQKP---DFPDYLLA--------DRGL 348 (419)
T ss_dssp EEEEEEEESSSSE--EEEEEEEECCSSSCBE-----EEEEECSSCEEECTTTCSSCC---CCCTTTEE--------SCCC
T ss_pred EEeceEEecCCcE--EEEEEEEecCCCCceE-----EeeEEEccEEEeCcccccCCC---CCchhhhh--------ccCC
Confidence 3334567777773 4567788999999973 112234567777432211000 00000100 0111
Q ss_pred eEEEEEcCCCCCCCCeEEEEEEEE
Q 007137 112 TFYAVKLPKALGKGDSYTFDVLAV 135 (616)
Q Consensus 112 ~~y~V~Lp~pl~pg~~vtl~V~~v 135 (616)
. + |.|++||++.++.|+..
T Consensus 349 ---~-s-~~pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 349 ---S-N-DDVIAPGESKEIVVKIQ 367 (419)
T ss_dssp ---C-C-CCCBCTTCEEEEEEEEE
T ss_pred ---C-C-CCCcCCCcceEEEEEee
Confidence 2 2 34999999999999865
No 114
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=20.59 E-value=4.9e+02 Score=25.41 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHhhHH--HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHH-
Q 007137 483 IQQVENVINRCLTTHD--KLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVA- 559 (616)
Q Consensus 483 ~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~- 559 (616)
||+....++++..--+ .|..+...+-+. +-...+.--+.+...-+++...+.++...-+.+ ..++.-+|..+-.
T Consensus 30 Cd~AI~~in~~i~dLd~AsLaA~s~~L~~~-~~~s~~~~qeq~~~~~~eL~~~i~~l~~AAk~~--~e~LG~av~~~a~~ 106 (216)
T 4f7g_B 30 CETAIAALNSCLRDLDQASLAAVSQQLAPR-EGISQEALHTQMLTAVQEISHLIEPLASAARAE--ASQLGHKVSQMAQY 106 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCccHHHHHHHHHHHHHHHHHhhhHHHHhhhcC--HHHHhHHHHHHHHH
Confidence 4444444444443222 233444445443 445567777778888888888888988888887 5556555555544
Q ss_pred ---------------HHHHHHHHHHhcccceeccccccc------cch-h-hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 560 ---------------KEKDLQEKVMAKHSTVVDCYEKKT------GIR-D-SENRVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 560 ---------------~~~~~~~~~~~~~~~~~~~~e~~~------~~~-~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
.|.+-|.-++.+.-+++++.=.++ +|- . ..+.=..+..-.+.+++-|++++.+|+|
T Consensus 107 ~epLv~aa~gaAS~t~ds~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~l~eai~d~~~tl~~ 185 (216)
T 4f7g_B 107 FEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNE 185 (216)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445545566666665544444 232 2 3343245566666778888888888775
No 115
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.30 E-value=95 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 007137 591 RVAAQQQKITALRQEVENLLELIDE 615 (616)
Q Consensus 591 ~~~~~~~k~~~~~~~~~~~~~~~~~ 615 (616)
++..+++..++|+.|++.|.+.++|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666554
No 116
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=20.20 E-value=3.4e+02 Score=21.71 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=39.5
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 484 QQVENVINRCLTTHDKLEASLRDLSRT---GDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 484 ~~~~~~~~~r~~~~~~~~~~~~~~~~~---~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
..+.....+-....+.|...++.+..+ ....+|.......+...+++...|.++...|...
T Consensus 15 ~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~ 78 (94)
T 3fav_B 15 SAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555566665544 3567788888888888888888888888888764
No 117
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.10 E-value=4.1e+02 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007137 588 SENRVAAQQQKITALRQEVENLLELID 614 (616)
Q Consensus 588 ~~~~~~~~~~k~~~~~~~~~~~~~~~~ 614 (616)
.+.+|..++..+..+.++|+.|-..|.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356677788888888888887765554
No 118
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=20.08 E-value=6.3e+02 Score=24.83 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007137 479 VQAAIQQVENVINRCLTTHDKLEASLRDLSRT--------GDVQACKAARKAADGLLKELSKELKLVLSFLQSS 544 (616)
Q Consensus 479 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--------~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~ 544 (616)
-..+++++..++..|..+=+.+-..|.++.+. -+..++..|=..+-.+...+.+.-..+...|.++
T Consensus 41 g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~ 114 (312)
T 3abh_A 41 GHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMND 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999888888764 2445666666666666555555555555555544
No 119
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=20.01 E-value=4.7e+02 Score=30.92 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=56.9
Q ss_pred EEEcCCCeEEEEEEEEEEeCCCCC-ceEEEEEeCCccccceeEEEEeeCCCCCcccccccccceeeccCCCCCCcceEEE
Q 007137 37 RIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYA 115 (616)
Q Consensus 37 tIDLs~~~Vk~t~~i~vkN~g~~p-~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~~~~~~~~~~~~~~y~ 115 (616)
++-+++. -+.+.+++++|.|..+ .....+.+|+. |.|.++..... . ...+.++.... .+.....
T Consensus 616 ~~~vg~~-~~l~l~v~v~N~gE~Ay~t~l~~~~p~~----l~~~~v~~~~~---~---~~~~~C~~~~~----n~~~~~~ 680 (967)
T 3ije_A 616 KIYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPLQ----ADFIGVVRNNE---A---LARLSCAFKTE----NQTRQVV 680 (967)
T ss_dssp EEETTSC-EEEEEEEEEEECSSCEESCEEEEECCTT----EEEEEECCSCT---T---SBCCEEEEECS----SSCCEEE
T ss_pred eEEecCC-cEEEEEEEEEeCCCCcccceEEEEeCCC----CCeeeeecccC---C---cccceeecCCC----CCceEEE
Confidence 3444444 4789999999998765 67778888876 77766543211 0 12355654221 1123457
Q ss_pred EEcCCCCCCCCeEEEEEEEEecc
Q 007137 116 VKLPKALGKGDSYTFDVLAVFAH 138 (616)
Q Consensus 116 V~Lp~pl~pg~~vtl~V~~v~t~ 138 (616)
-.|..|+..|+++++.|.+-..+
T Consensus 681 C~lgnP~~~~~~v~f~l~f~~~~ 703 (967)
T 3ije_A 681 CDLGNPMKAGTQLLAGLRFSVHQ 703 (967)
T ss_dssp EECCSEECTTCEEEEEEEEEECC
T ss_pred eeCCCCcCCCCEEEEEEEEeccc
Confidence 78899999999999998876553
No 120
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.00 E-value=3.7e+02 Score=25.69 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 007137 513 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 568 (616)
Q Consensus 513 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~ 568 (616)
+++++..+..+ +.+.+++.+++.+|... -..+-+++.+++.+..+++.+.
T Consensus 64 ~q~~~~~~e~l----~s~ae~ll~l~~~Le~~--r~~l~~~l~~~~~L~~~~~~k~ 113 (192)
T 2p22_C 64 LTDFAGKIHAF----RDQFKQLEENFEDLHEQ--KDKVQALLENARILESKYVASW 113 (192)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 33444445555555543 4556666777777776665553
Done!