BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007138
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 32/213 (15%)
Query: 239 LVSFPEVALPSKLKNIWISTCDA--LKSLPEAWMCDTNSSLEILSIHGCRSL-TYIAAVQ 295
L FP+ A +L ++ T DA L LP+ L+ + R+L IA++
Sbjct: 93 LPQFPDQAF--RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLN 150
Query: 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSK-NELPAT 354
L++LSI C + L E + S T EH + + SL ++ LPA+
Sbjct: 151 ---RLRELSIRACPELTELP--EPLAS----TDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 355 ------LESLEVGNLP-----------PSLKSLYVYGCSKLESIAERLDNNTSLETISIE 397
L+SL++ N P P L+ L + GC+ L + L+ + ++
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 398 RCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP 430
C NL LP +H L QL+ + + C NL P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 38/257 (14%)
Query: 159 KSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLS--NCEGLV 216
K+ +LL+D R+ + +L+S+ + DQ + RL +L+ + GL
Sbjct: 69 KATADLLEDATQPGRVAL----ELRSVPLPQFPDQ-------AFRLSHLQHXTIDAAGLX 117
Query: 217 KLPQXXXXXXXXREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNS 275
+LP + + + + L + P +A ++L+ + I C L LPE + T++
Sbjct: 118 ELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDA 175
Query: 276 SLEILSIHGCRSLT--YIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS---RRYTSCL 330
S E + +SL + LP SI++ N+++L + S+ +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLP-----ASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTS 390
LE LD+ C +L +N P + G P LK L + CS L ++ + T
Sbjct: 231 LEELDLRGCTAL-----RNYPP-----IFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 391 LETISIERCGNLKILPS 407
LE + + C NL LPS
Sbjct: 279 LEKLDLRGCVNLSRLPS 295
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 45/177 (25%)
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGC--SKLESIAERLDNN 388
L L I +CP LT ELP L S + L +L + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE--GGLPCAKLRRLDISD 446
+L+++ I R L L +H+L +L+ + + C L ++P GG A L+RL + D
Sbjct: 206 QNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKD 262
Query: 447 CKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503
C +NL +L + HR + L L +RGC
Sbjct: 263 C-----------------SNLLTLPLD---------------IHRLTQLEKLDLRGC 287
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 384 RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAK----- 438
+ D T L+T+ +C N+ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 439 -LRRLDISDCKRLEG 452
RR ++ ++ G
Sbjct: 329 VARRFNLPGVRQGYG 343
>pdb|1JV5|B Chain B, Anti-Blood Group A Fv
Length = 117
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 34 WEDWIPLRSGQGVEW 48
W +W+ LR GQG+EW
Sbjct: 33 WINWVKLRPGQGLEW 47
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 28/132 (21%)
Query: 276 SLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRR--YTSCL--- 330
S+ + GCR +T I + + + +C + + + + ++ R ++ C
Sbjct: 61 SIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSVKXIGRCTFSGCYALK 120
Query: 331 -------LEHLDISSCPSLTCIFSKNELP-----------ATLESLEVGNLPPSLKSLY- 371
L+ + + + C F + +P AT ESLE +LP S ++L+
Sbjct: 121 SILLPLXLKSIGVEAFKG--CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSXETLHN 178
Query: 372 --VYGCSKLESI 381
GC KL+SI
Sbjct: 179 GLFSGCGKLKSI 190
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 229 REIEICKCSSLVSFPEVALPSKLKNIWIST---CDALK-SLPEAWMCDTNSSLEILSIHG 284
+ I C S + + LP LK+I + CD + ++PE + +
Sbjct: 106 KXIGRCTFSGCYALKSILLPLXLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFAT----- 160
Query: 285 CRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTC 344
C SL Y++ +L S C ++++ + ++ R Y C E + + +
Sbjct: 161 CESLEYVSLPDSXETLHNGLFSGCGKLKSIKLPRNLKIIRDY--CFAECILLENXEFPNS 218
Query: 345 IFSKNELPATLESLEVGNLPPSLKSL---YVYGCSKLESIAERLDNN 388
++ + + ++ +P S L YGC+ LESI+ + NN
Sbjct: 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESIS--IQNN 263
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 384 RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAK----- 438
+ D T L+T+ +C ++ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 439 -LRRLDISDCKRLEG 452
RR ++ ++ G
Sbjct: 329 VARRFNLPGVRQGYG 343
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 384 RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAK----- 438
+ D T L+T+ +C ++ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 439 -LRRLDISDCKRLEG 452
RR ++ ++ G
Sbjct: 329 VARRFNLPGVRQGYG 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,299,961
Number of Sequences: 62578
Number of extensions: 669680
Number of successful extensions: 1592
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1575
Number of HSP's gapped (non-prelim): 21
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)