Query 007138
Match_columns 616
No_of_seqs 228 out of 2850
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 19:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.3E-34 1.6E-38 327.5 27.2 254 163-446 206-461 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-32 3.8E-37 316.0 26.9 512 16-583 88-605 (968)
3 PLN03210 Resistant to P. syrin 99.9 3.5E-23 7.5E-28 239.0 25.2 133 389-566 778-910 (1153)
4 PLN03210 Resistant to P. syrin 99.9 4E-22 8.7E-27 230.2 24.5 345 160-588 549-909 (1153)
5 KOG0618 Serine/threonine phosp 99.9 3.7E-24 8E-29 222.0 -1.6 159 55-260 3-167 (1081)
6 KOG4194 Membrane glycoprotein 99.9 3.4E-22 7.3E-27 197.3 7.0 362 170-580 79-447 (873)
7 KOG0444 Cytoskeletal regulator 99.8 5.4E-23 1.2E-27 204.2 -2.8 359 150-563 13-376 (1255)
8 KOG4194 Membrane glycoprotein 99.8 7.4E-22 1.6E-26 194.9 3.2 352 160-560 93-450 (873)
9 KOG0618 Serine/threonine phosp 99.8 7.8E-22 1.7E-26 205.0 -5.9 409 52-584 47-488 (1081)
10 KOG0444 Cytoskeletal regulator 99.8 1.4E-21 2.9E-26 194.4 -5.1 369 134-557 22-394 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.5E-27 192.1 -13.7 477 51-583 46-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.7E-20 3.8E-25 177.5 -11.7 458 47-567 65-544 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.7E-18 147.7 16.5 258 202-563 201-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.4 2E-12 4.3E-17 139.6 16.2 255 226-583 201-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.4 3E-12 6.5E-17 139.1 12.5 95 202-308 199-293 (754)
16 KOG4341 F-box protein containi 99.4 4E-14 8.6E-19 135.7 -2.3 269 138-453 161-442 (483)
17 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.5E-16 134.6 12.3 181 365-583 241-426 (754)
18 KOG4341 F-box protein containi 99.3 3.3E-13 7.2E-18 129.5 -1.8 310 141-502 138-461 (483)
19 KOG0617 Ras suppressor protein 99.1 1.4E-12 3.1E-17 109.9 -4.7 158 365-568 33-191 (264)
20 cd00116 LRR_RI Leucine-rich re 99.1 3E-11 6.5E-16 121.5 1.3 43 461-503 161-203 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.1 4.5E-10 9.8E-15 124.3 10.2 252 137-417 541-798 (889)
22 cd00116 LRR_RI Leucine-rich re 99.0 4.7E-11 1E-15 120.1 1.5 210 365-582 81-317 (319)
23 KOG4237 Extracellular matrix p 99.0 1E-11 2.2E-16 118.5 -3.9 112 139-260 86-199 (498)
24 KOG0617 Ras suppressor protein 98.9 3.9E-11 8.6E-16 101.3 -4.1 153 386-582 30-183 (264)
25 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 119.8 6.1 129 139-284 521-651 (889)
26 KOG4237 Extracellular matrix p 98.9 7.1E-11 1.5E-15 112.8 -4.6 80 200-282 65-147 (498)
27 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 99.4 0.8 154 47-236 118-281 (505)
28 KOG3207 Beta-tubulin folding c 98.6 3.5E-08 7.5E-13 96.1 3.4 204 70-308 119-336 (505)
29 PRK15386 type III secretion pr 98.5 7.1E-07 1.5E-11 88.9 11.7 60 523-586 154-214 (426)
30 PF14580 LRR_9: Leucine-rich r 98.5 4.7E-08 1E-12 86.7 2.5 83 491-585 40-126 (175)
31 KOG2120 SCF ubiquitin ligase, 98.4 5.3E-09 1.2E-13 96.5 -6.2 59 365-423 313-373 (419)
32 KOG2120 SCF ubiquitin ligase, 98.4 3.5E-08 7.7E-13 91.2 -2.1 151 248-416 233-390 (419)
33 KOG0532 Leucine-rich repeat (L 98.3 5E-08 1.1E-12 98.0 -3.5 189 368-582 78-270 (722)
34 KOG1259 Nischarin, modulator o 98.3 7E-07 1.5E-11 82.8 3.9 126 365-503 284-409 (490)
35 PF14580 LRR_9: Leucine-rich r 98.2 1.1E-06 2.5E-11 77.9 3.4 102 202-309 19-124 (175)
36 KOG1259 Nischarin, modulator o 98.1 8E-07 1.7E-11 82.4 0.9 37 71-107 213-251 (490)
37 PRK15386 type III secretion pr 98.1 1.7E-05 3.7E-10 79.3 10.0 139 386-582 49-187 (426)
38 KOG1909 Ran GTPase-activating 98.1 6.5E-07 1.4E-11 85.0 -0.2 189 365-558 92-307 (382)
39 KOG1909 Ran GTPase-activating 97.9 5.3E-06 1.1E-10 79.0 2.7 195 382-584 85-310 (382)
40 KOG0532 Leucine-rich repeat (L 97.9 3.7E-07 7.9E-12 92.0 -5.8 181 378-583 62-245 (722)
41 COG4886 Leucine-rich repeat (L 97.9 1E-05 2.3E-10 83.8 4.4 34 523-558 253-286 (394)
42 PF13855 LRR_8: Leucine rich r 97.9 2.2E-05 4.7E-10 56.8 4.7 56 494-558 2-58 (61)
43 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.2E-10 57.1 4.3 57 525-583 1-60 (61)
44 KOG1947 Leucine rich repeat pr 97.8 6.7E-06 1.5E-10 87.9 0.8 111 202-312 188-309 (482)
45 KOG1947 Leucine rich repeat pr 97.8 5.2E-06 1.1E-10 88.7 -0.4 121 161-288 180-308 (482)
46 PLN03150 hypothetical protein; 97.7 7.4E-05 1.6E-09 81.5 7.5 90 367-457 420-509 (623)
47 COG4886 Leucine-rich repeat (L 97.6 6.7E-05 1.5E-09 77.8 5.6 81 492-583 208-288 (394)
48 KOG2982 Uncharacterized conser 97.5 7.7E-05 1.7E-09 69.6 3.7 93 192-285 61-156 (418)
49 KOG3665 ZYG-1-like serine/thre 97.5 9.6E-05 2.1E-09 80.5 4.8 160 23-214 85-262 (699)
50 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.1E-09 47.5 3.5 41 202-244 1-41 (44)
51 PF12799 LRR_4: Leucine Rich r 97.3 0.00021 4.5E-09 47.3 3.1 41 525-567 1-41 (44)
52 PLN03150 hypothetical protein; 97.3 0.00083 1.8E-08 73.4 8.7 108 203-312 419-529 (623)
53 KOG2982 Uncharacterized conser 97.2 0.00015 3.3E-09 67.7 2.0 190 329-567 71-267 (418)
54 KOG3665 ZYG-1-like serine/thre 97.2 0.00023 5E-09 77.6 3.1 108 141-260 122-231 (699)
55 KOG0531 Protein phosphatase 1, 97.1 0.00016 3.4E-09 75.2 0.7 103 365-476 95-197 (414)
56 KOG0531 Protein phosphatase 1, 97.1 7.8E-05 1.7E-09 77.5 -1.7 188 365-581 72-264 (414)
57 KOG1859 Leucine-rich repeat pr 96.9 2.4E-05 5.1E-10 81.5 -7.4 55 202-259 209-264 (1096)
58 KOG1859 Leucine-rich repeat pr 96.8 0.00022 4.9E-09 74.5 -1.2 107 460-584 182-291 (1096)
59 KOG1644 U2-associated snRNP A' 96.1 0.0096 2.1E-07 52.9 5.1 34 202-236 88-123 (233)
60 KOG1644 U2-associated snRNP A' 95.8 0.02 4.3E-07 51.0 5.4 86 488-583 59-151 (233)
61 KOG2739 Leucine-rich acidic nu 95.5 0.0091 2E-07 55.4 2.5 60 47-107 40-105 (260)
62 KOG2123 Uncharacterized conser 95.5 0.00044 9.6E-09 64.1 -5.9 80 491-583 17-99 (388)
63 KOG3864 Uncharacterized conser 95.2 0.0061 1.3E-07 54.2 0.5 85 389-476 101-187 (221)
64 KOG3864 Uncharacterized conser 94.8 0.009 1.9E-07 53.1 0.2 72 488-565 120-192 (221)
65 KOG2123 Uncharacterized conser 94.4 0.0058 1.3E-07 56.9 -1.9 37 73-109 20-57 (388)
66 KOG2739 Leucine-rich acidic nu 94.2 0.015 3.3E-07 53.9 0.5 58 202-260 65-127 (260)
67 KOG4579 Leucine-rich repeat (L 94.1 0.012 2.7E-07 48.8 -0.3 111 439-567 29-140 (177)
68 COG5238 RNA1 Ran GTPase-activa 93.8 0.034 7.5E-07 51.8 1.9 188 365-558 58-281 (388)
69 COG5238 RNA1 Ran GTPase-activa 93.5 0.067 1.4E-06 49.9 3.3 195 365-567 92-320 (388)
70 PF00560 LRR_1: Leucine Rich R 92.4 0.072 1.6E-06 29.1 1.2 21 203-224 1-21 (22)
71 KOG4579 Leucine-rich repeat (L 90.8 0.024 5.2E-07 47.2 -2.7 93 164-267 48-140 (177)
72 PF13504 LRR_7: Leucine rich r 90.7 0.2 4.3E-06 25.4 1.6 9 550-558 2-10 (17)
73 PF00560 LRR_1: Leucine Rich R 90.7 0.15 3.3E-06 27.8 1.3 16 527-543 2-17 (22)
74 PF13306 LRR_5: Leucine rich r 88.8 2.8 6E-05 35.1 8.4 56 386-445 9-66 (129)
75 PF13306 LRR_5: Leucine rich r 83.6 3.9 8.5E-05 34.2 6.6 80 488-580 30-111 (129)
76 smart00367 LRR_CC Leucine-rich 81.5 0.88 1.9E-05 25.9 1.2 18 436-453 1-18 (26)
77 smart00369 LRR_TYP Leucine-ric 70.2 3.4 7.3E-05 23.4 1.6 20 548-568 1-20 (26)
78 smart00370 LRR Leucine-rich re 70.2 3.4 7.3E-05 23.4 1.6 20 548-568 1-20 (26)
79 smart00364 LRR_BAC Leucine-ric 57.2 7 0.00015 22.3 1.2 18 549-567 2-19 (26)
80 KOG3763 mRNA export factor TAP 46.7 12 0.00026 39.2 1.9 15 249-263 270-284 (585)
81 PF13516 LRR_6: Leucine Rich r 46.2 16 0.00034 20.1 1.5 15 92-106 1-15 (24)
82 KOG4308 LRR-containing protein 44.9 0.42 9.2E-06 50.2 -9.0 194 366-564 88-304 (478)
83 smart00365 LRR_SD22 Leucine-ri 38.4 27 0.00058 20.0 1.7 17 549-566 2-18 (26)
84 KOG3763 mRNA export factor TAP 29.2 33 0.00071 36.1 1.8 67 224-291 216-286 (585)
85 PF05725 FNIP: FNIP Repeat; I 29.0 1.1E+02 0.0023 19.9 3.7 31 549-580 12-42 (44)
86 smart00368 LRR_RI Leucine rich 24.5 60 0.0013 18.7 1.6 13 202-214 2-14 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.3e-34 Score=327.48 Aligned_cols=254 Identities=20% Similarity=0.145 Sum_probs=124.4
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
..++.+++|++|+++++.....++. .+..+ ++|++|++++|...+.+|..++.+++|++|++++|.....+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPY-----EIGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCCh-----hHhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 4456666666666666543222322 24444 66666666666654556666666666666666666433334
Q ss_pred C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCCCcccccccc
Q 007138 243 P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGI 320 (616)
Q Consensus 243 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~ 320 (616)
| .+..+++|++|++++|.....++..+ ..+++|+.|+++++......+.. ..+++|+.|++++|.-...+ +..+
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l 352 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNL 352 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHH
Confidence 4 33446666666666665433444432 34466666666655432222221 34456666666666432222 3333
Q ss_pred cccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccc
Q 007138 321 QSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCG 400 (616)
Q Consensus 321 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 400 (616)
.. +++|+.|+++++ .+.. ..|..+..+ ++++.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 353 ~~-----~~~L~~L~Ls~n-~l~~-----~~p~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 353 GK-----HNNLTVLDLSTN-NLTG-----EIPEGLCSS------GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred hC-----CCCCcEEECCCC-eeEe-----eCChhHhCc------CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 32 456666666653 2221 112222222 444455555444444444444444555555555544
Q ss_pred ccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 401 NLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 401 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
..+.+|..+..+++|+.|++++|.....++.....+++|+.|++++
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 4444444444445555555544433223333233333444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-32 Score=316.02 Aligned_cols=512 Identities=18% Similarity=0.185 Sum_probs=380.7
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC-CCCCccEEeecCCc---chhhhhcC
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE-HLPALEMLVIEGCE---ELLVSVAS 91 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~~~~L~~L~l~~c~---~l~~~~~~ 91 (616)
++..+++|+.|++.++. +....+... . ..+++|++|++++|. +.+.+|. .+++|++|++++|. .++..+..
T Consensus 88 ~~~~l~~L~~L~Ls~n~-~~~~ip~~~-~--~~l~~L~~L~Ls~n~-l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ-LSGPIPDDI-F--TTSSSLRYLNLSNNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred HHhCCCCCCEEECCCCc-cCCcCChHH-h--ccCCCCCEEECcCCc-cccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 36779999999999873 443333222 1 378999999999986 5556774 68999999999997 34567889
Q ss_pred CCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCc
Q 007138 92 LPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSL 171 (616)
Q Consensus 92 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 171 (616)
+++|++|++++|.... ..+..++....+...+..++. +.+.+|..+.+++.|+..+++.+...+ ..+..++.+++|
T Consensus 163 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 238 (968)
T PLN00113 163 FSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSL 238 (968)
T ss_pred CCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCCCC
Confidence 9999999999998654 334455666666666555442 345677666666666665555554422 344557899999
Q ss_pred cEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-CCCCCC
Q 007138 172 KRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSK 250 (616)
Q Consensus 172 ~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~ 250 (616)
++|++++|.....++. .+..+ ++|++|++++|...+.+|..+..+++|++|++++|.....+|. +..+++
T Consensus 239 ~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 239 NHLDLVYNNLTGPIPS-----SLGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred CEEECcCceeccccCh-----hHhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 9999999864333433 36666 8999999999988778899999999999999999865555663 456899
Q ss_pred CcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCCCcccccccccccccccCC
Q 007138 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSC 329 (616)
Q Consensus 251 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 329 (616)
|+.|++++|.....++..+ ..+++|+.|+++++.....++.. ...++|+.|+++++.-...+ +..+.. ++
T Consensus 310 L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~-----~~ 380 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCS-----SG 380 (968)
T ss_pred CcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhC-----cC
Confidence 9999999998655566544 56789999999987644344432 55679999999988533333 443333 67
Q ss_pred CccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc
Q 007138 330 LLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL 409 (616)
Q Consensus 330 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l 409 (616)
+|+.|+++++. +. +.+|..+..+ ++|+.|++++|...+.+|..+..+++|+.|++++|...+.++..+
T Consensus 381 ~L~~L~l~~n~-l~-----~~~p~~~~~~------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 381 NLFKLILFSNS-LE-----GEIPKSLGAC------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred CCCEEECcCCE-ec-----ccCCHHHhCC------CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 89999998843 33 2344445444 899999999998888888889999999999999998777788778
Q ss_pred cCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccc
Q 007138 410 HNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF 489 (616)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 489 (616)
..+++|+.|++++|.....+|.. ...++|+.|++++| .+++..|. .+.++++|+.|++++|.... ..+..+
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n-~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~----~~p~~~ 519 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRN-QFSGAVPR---KLGSLSELMQLKLSENKLSG----EIPDEL 519 (968)
T ss_pred ccCCCCcEEECcCceeeeecCcc-cccccceEEECcCC-ccCCccCh---hhhhhhccCEEECcCCccee----eCChHH
Confidence 89999999999999766566553 34458999999994 77777775 56788999999999996331 233456
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG 569 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 569 (616)
..+++|+.|++++| .....+|... ..+++|++|++++|+....+|..+..++.|+++++++|+-...+|..+
T Consensus 520 ~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 520 SSCKKLVSLDLSHN-QLSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred cCccCCCEEECCCC-cccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 78899999999996 2233445444 368999999999987777899889999999999999987777788765
Q ss_pred CcCCcceEEEcCCc
Q 007138 570 LPSSLLQLQIYCCP 583 (616)
Q Consensus 570 ~~~~L~~L~i~~c~ 583 (616)
.+..+....+.+++
T Consensus 592 ~~~~~~~~~~~~n~ 605 (968)
T PLN00113 592 AFLAINASAVAGNI 605 (968)
T ss_pred hhcccChhhhcCCc
Confidence 54455555555554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.5e-23 Score=239.04 Aligned_cols=133 Identities=27% Similarity=0.376 Sum_probs=76.2
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccce
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLH 468 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~ 468 (616)
++|+.|++++|+.+..+|..+.++++|+.|++++|..+..+|... .+++|++|++++|..+... |
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-p------------- 842 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-P------------- 842 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-c-------------
Confidence 355555555555555555555555555555555555555554433 3335555555555444221 1
Q ss_pred eeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccC
Q 007138 469 SLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDL 548 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 548 (616)
....+|+.|++++| .++.+|.... .+++|+.|++.+|++++.+|.....+
T Consensus 843 ---------------------~~~~nL~~L~Ls~n--~i~~iP~si~-------~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 843 ---------------------DISTNISDLNLSRT--GIEEVPWWIE-------KFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred ---------------------ccccccCEeECCCC--CCccChHHHh-------cCCCCCEEECCCCCCcCccCcccccc
Confidence 11245667777665 5566665442 56777777777777777777666677
Q ss_pred ccccEEEecCCCCCcccC
Q 007138 549 QNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~ 566 (616)
+.|+.+++++|..++.++
T Consensus 893 ~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 893 KHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCeeecCCCccccccc
Confidence 777777777777776543
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4e-22 Score=230.23 Aligned_cols=345 Identities=22% Similarity=0.313 Sum_probs=229.3
Q ss_pred cchhHHhcCCCccEEeeccCC--C---cc-ccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEE
Q 007138 160 SHNELLQDICSLKRLTITSCP--K---LQ-SLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEI 233 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~--~---l~-~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 233 (616)
.....|..|++|+.|.+.... . +. .++. .+ ..++.+|+.|++.+++. ..+|..+ ...+|++|++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-----~~---~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-----GF---DYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCc-----ch---hhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEEC
Confidence 345567888888888886432 1 11 1111 12 22346788888888765 6777766 4678888888
Q ss_pred cCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCC
Q 007138 234 CKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNI 311 (616)
Q Consensus 234 ~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l 311 (616)
.++ .+..++ ....+++|+.++++++..+..+|.. ..+++|+.|++++|..+..++.. ..+++|+.|++++|..+
T Consensus 619 ~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 619 QGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 886 466665 3445788888888887777777653 45577888888877777666544 45567777777777777
Q ss_pred CcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCc
Q 007138 312 RTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSL 391 (616)
Q Consensus 312 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 391 (616)
+.+ |..+ .+++|+.|++++|..+.. +| ... .+|+.|+++++. +..+|..+ .+++|
T Consensus 695 ~~L--p~~i------~l~sL~~L~Lsgc~~L~~-~p-----~~~---------~nL~~L~L~~n~-i~~lP~~~-~l~~L 749 (1153)
T PLN03210 695 EIL--PTGI------NLKSLYRLNLSGCSRLKS-FP-----DIS---------TNISWLDLDETA-IEEFPSNL-RLENL 749 (1153)
T ss_pred Ccc--CCcC------CCCCCCEEeCCCCCCccc-cc-----ccc---------CCcCeeecCCCc-cccccccc-ccccc
Confidence 666 4433 156677777777765543 22 111 566777776664 34455433 45666
Q ss_pred cEEEccccccccc------c-cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccc
Q 007138 392 ETISIERCGNLKI------L-PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNL 464 (616)
Q Consensus 392 ~~L~l~~~~~l~~------~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l 464 (616)
+.|.+.++..... + +......++|+.|++++|+.+..+|.....+++|+.|++++|+.++.. |.
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~-------- 820 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PT-------- 820 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CC--------
Confidence 6666665432110 0 011123356666666666666666665555556666666666655432 11
Q ss_pred ccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc
Q 007138 465 TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS 544 (616)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 544 (616)
. ..+++|+.|++++ |..+..++. .+++|+.|++++ +.++.+|..
T Consensus 821 -----------------------~-~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~s 864 (1153)
T PLN03210 821 -----------------------G-INLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWW 864 (1153)
T ss_pred -----------------------C-CCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHH
Confidence 2 2578899999999 566777765 357899999999 679999999
Q ss_pred cccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCchhhhh
Q 007138 545 IVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPLIAEK 588 (616)
Q Consensus 545 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~ 588 (616)
+..+++|+.|++.+|++++.+|.. ..+++|+.+++++|+.+...
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999999999999999999999884 34789999999999988653
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-24 Score=222.03 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=102.1
Q ss_pred EeeccCCCcccccCCCC-C--CccEEeecCCcchh---hhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCc
Q 007138 55 LHIISCSKLQGTFPEHL-P--ALEMLVIEGCEELL---VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 128 (616)
Q Consensus 55 L~l~~c~~l~~~~p~~~-~--~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (616)
+++++|. ++ .+|... + .+..|.+..+..+. ..+.+..+|+.|+++.+.....
T Consensus 3 vd~s~~~-l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-------------------- 60 (1081)
T KOG0618|consen 3 VDASDEQ-LE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-------------------- 60 (1081)
T ss_pred ccccccc-Cc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC--------------------
Confidence 5566663 44 566432 1 17777777766443 3344455699999999876543
Q ss_pred ceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEE
Q 007138 129 QVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 208 (616)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~ 208 (616)
|..+..+.+|...+++.+.+ ...+.....+.+|++|.|.+ ..++.+|.+ +..+ .+|++|+
T Consensus 61 --------p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~Ld 120 (1081)
T KOG0618|consen 61 --------PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLD 120 (1081)
T ss_pred --------CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhheecc-chhhcCchh-----HHhh----hcccccc
Confidence 34455555555555555443 12335568889999999876 446666654 7777 8899999
Q ss_pred ccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 209 LSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
+++|.+ ..+|..+..++.++.+..++|..+..++... ++.+++..+.
T Consensus 121 lS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~ 167 (1081)
T KOG0618|consen 121 LSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNV 167 (1081)
T ss_pred cchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhh
Confidence 999887 6788878888888888888874444444322 4555554444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.4e-22 Score=197.32 Aligned_cols=362 Identities=18% Similarity=0.201 Sum_probs=236.2
Q ss_pred CccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCC
Q 007138 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVAL 247 (616)
Q Consensus 170 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~ 247 (616)
.-+.|+++++. +..+.. ..+.++ ++|+++++..|.. +.+|...+...+|+.|++.+| .+..+. ++..
T Consensus 79 ~t~~LdlsnNk-l~~id~----~~f~nl----~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDF----EFFYNL----PNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccc-cccCcH----HHHhcC----Ccceeeeeccchh-hhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence 34556776643 443322 235555 7777777777654 677765555666777777776 455554 3344
Q ss_pred CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCCCCCccccccccccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
++.|+.|+++.|. +..++...+ ..-.++++|+++++ .++.+... ..+.+|..|.++++ .++.+ |... +
T Consensus 148 l~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrN-rittL--p~r~----F 217 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRN-RITTL--PQRS----F 217 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCC-CCCCCceEEeeccc-cccccccccccccchheeeecccC-ccccc--CHHH----h
Confidence 7777777777765 555543321 22256777777764 35554433 33447777778777 45555 3221 1
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
.++++|+.|++.. +.+.. ++.+....+ ++|+.|.+..|....--...+..+.++++|++..|.....-
T Consensus 218 k~L~~L~~LdLnr-N~iri----------ve~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 218 KRLPKLESLDLNR-NRIRI----------VEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred hhcchhhhhhccc-cceee----------ehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 2367788888876 44442 111122222 77888888877554433445677889999999887633322
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE 484 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 484 (616)
..++-++++|+.|+++.| .+..+....| -+++|+.|++++ ++++...++ .+.-+..|+.|.|+.|.... .
T Consensus 286 ~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~---sf~~L~~Le~LnLs~Nsi~~----l 356 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG---SFRVLSQLEELNLSHNSIDH----L 356 (873)
T ss_pred cccccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChh---HHHHHHHhhhhcccccchHH----H
Confidence 335678999999999987 5555544444 457899999998 788776665 56677888999999987543 2
Q ss_pred cCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCc
Q 007138 485 RGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 485 ~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~ 563 (616)
....|..+.+|++|++++| .+...-.. -..++..+++|+.|++.+ ++++.||. .+..++.|+.|++.+ |.+.
T Consensus 357 ~e~af~~lssL~~LdLr~N--~ls~~IED---aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-Naia 429 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSN--ELSWCIED---AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIA 429 (873)
T ss_pred HhhHHHHhhhhhhhcCcCC--eEEEEEec---chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccce
Confidence 2236788899999999986 33322221 123555789999999999 78999987 788899999999998 8888
Q ss_pred ccCCCCC-cCCcceEEEc
Q 007138 564 YFPEKGL-PSSLLQLQIY 580 (616)
Q Consensus 564 ~l~~~~~-~~~L~~L~i~ 580 (616)
++-...+ .-.|++|.+.
T Consensus 430 SIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 430 SIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecccccccchhhhhhhc
Confidence 8776544 2367777665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.4e-23 Score=204.21 Aligned_cols=359 Identities=20% Similarity=0.257 Sum_probs=198.4
Q ss_pred CCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCcc
Q 007138 150 NIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLR 229 (616)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 229 (616)
+.+.+.+.+...+.....|++++.|.+.. +++..+|.+ ++.+ .+|++|.+..|.. +.+...+..++.|+
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSDLPRLR 81 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-HhhhhhhccchhhH
Confidence 34444444445555667788888888876 446666654 6666 7788888888665 45555566777888
Q ss_pred EEEEcCCC-CCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEE
Q 007138 230 EIEICKCS-SLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSI 305 (616)
Q Consensus 230 ~L~l~~~~-~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l 305 (616)
.+.+++|. +-..+| .+..+..|..|++++|. ++..|... ....++-.|+++++ +++.+|.. ..++-|-.|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcc
Confidence 88887763 123455 45557788888888776 66666553 33356666777764 46665543 23345555666
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC-chhhhhh
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK-LESIAER 384 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~ 384 (616)
+++ .++.+ |.-+.. +.+|+.|.+++.+- .. +...- ++++ .+|+.|.+++... ...+|..
T Consensus 158 S~N-rLe~L--PPQ~RR-----L~~LqtL~Ls~NPL-~h-fQLrQ----LPsm------tsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 158 SNN-RLEML--PPQIRR-----LSMLQTLKLSNNPL-NH-FQLRQ----LPSM------TSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccc-hhhhc--CHHHHH-----HhhhhhhhcCCChh-hH-HHHhc----Cccc------hhhhhhhcccccchhhcCCCc
Confidence 665 45555 433333 55566666666221 11 11111 1112 5566666665432 3456666
Q ss_pred ccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccc
Q 007138 385 LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNL 464 (616)
Q Consensus 385 ~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l 464 (616)
+..+.+|..++++.| .+..+|..+-.+++|+.|.+++| .++.+......-.+|++|+++. +.++.. |. .+.++
T Consensus 218 ld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~L-P~---avcKL 290 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVL-PD---AVCKL 290 (1255)
T ss_pred hhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccc-hH---HHhhh
Confidence 666777777777664 36667777777777777777776 3443332221112677777776 455442 22 34444
Q ss_pred ccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc
Q 007138 465 TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS 544 (616)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 544 (616)
++|+.|.+.+|...+ ...+.++.++.+|+++..++| +++-+|.+.. .++.|+.|.+.+ +.+.++|..
T Consensus 291 ~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aanN--~LElVPEglc-------RC~kL~kL~L~~-NrLiTLPea 357 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAANN--KLELVPEGLC-------RCVKLQKLKLDH-NRLITLPEA 357 (1255)
T ss_pred HHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhcc--ccccCchhhh-------hhHHHHHhcccc-cceeechhh
Confidence 455555555444332 223334444555555555443 4444444432 344555555544 344445544
Q ss_pred cccCccccEEEecCCCCCc
Q 007138 545 IVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 545 ~~~~~~L~~L~l~~c~~l~ 563 (616)
+.-++.|+.|++++++++-
T Consensus 358 IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhcCCcceeeccCCcCcc
Confidence 4445555555555544443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.4e-22 Score=194.93 Aligned_cols=352 Identities=17% Similarity=0.222 Sum_probs=248.4
Q ss_pred cchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCC
Q 007138 160 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSL 239 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 239 (616)
.....|..+++|+++++..+. ++.+|.. .....+|+.|++.+|...+.-.+.+..++.|+.|+++.| .+
T Consensus 93 id~~~f~nl~nLq~v~l~~N~-Lt~IP~f---------~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~i 161 (873)
T KOG4194|consen 93 IDFEFFYNLPNLQEVNLNKNE-LTRIPRF---------GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LI 161 (873)
T ss_pred CcHHHHhcCCcceeeeeccch-hhhcccc---------cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hh
Confidence 566778899999999998754 5655543 111256889999887764444556777888999999887 57
Q ss_pred CCCCCC--CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCCCCCccc
Q 007138 240 VSFPEV--ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLT 315 (616)
Q Consensus 240 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~ 315 (616)
..++.- ..-.++++|++++|. ++.+...-+ .++.+|..|.++.+ .++.++.. ..+++|+.|++..+ .++.+.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~irive 237 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIVE 237 (873)
T ss_pred hcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeeeh
Confidence 777633 335689999998887 665544322 44457888888875 46666654 34678888888776 344331
Q ss_pred ccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEE
Q 007138 316 VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETIS 395 (616)
Q Consensus 316 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 395 (616)
+- .+..++.|+.|.+.. +++.. ..++.|..- .++++|+++.|....--..++..++.|+.|+
T Consensus 238 ~l------tFqgL~Sl~nlklqr-N~I~k-L~DG~Fy~l----------~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 238 GL------TFQGLPSLQNLKLQR-NDISK-LDDGAFYGL----------EKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hh------hhcCchhhhhhhhhh-cCccc-ccCcceeee----------cccceeecccchhhhhhcccccccchhhhhc
Confidence 11 122256677777765 44443 333433221 7889999998866554455678889999999
Q ss_pred cccccccccccccccCCCCCcEEEeccCCCCcccCCCCCC-CCCceEEEccCCcccccchhhhHhhhcccccceeeecCC
Q 007138 396 IERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP-CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474 (616)
Q Consensus 396 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~ 474 (616)
++.|..-..-+.++..+++|+.|++++| .+..++++.+. +..|+.|.++. ++++.+-.. .|..+++|+.|||+.
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~---af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG---AFVGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhh---HHHHhhhhhhhcCcC
Confidence 9998766666677888999999999998 67778776653 25789999998 677664322 567788999999999
Q ss_pred ChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc-cccccCccccE
Q 007138 475 NMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTE 553 (616)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~ 553 (616)
|...|... .....+.++++|++|.+.+| +++.++... +..+++|++|++.+ +.+.+|- ..+..+ .|++
T Consensus 375 N~ls~~IE-Daa~~f~gl~~LrkL~l~gN--qlk~I~krA------fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 375 NELSWCIE-DAAVAFNGLPSLRKLRLTGN--QLKSIPKRA------FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred CeEEEEEe-cchhhhccchhhhheeecCc--eeeecchhh------hccCcccceecCCC-Ccceeecccccccc-hhhh
Confidence 98777211 12345778999999999997 889888854 55799999999999 5577664 467777 8888
Q ss_pred EEecCCC
Q 007138 554 LVLVNCP 560 (616)
Q Consensus 554 L~l~~c~ 560 (616)
|.+..-+
T Consensus 444 Lv~nSss 450 (873)
T KOG4194|consen 444 LVMNSSS 450 (873)
T ss_pred hhhcccc
Confidence 8877543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=7.8e-22 Score=204.96 Aligned_cols=409 Identities=20% Similarity=0.219 Sum_probs=210.4
Q ss_pred cceEeeccCCCcccccCCC---CCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCC
Q 007138 52 LRELHIISCSKLQGTFPEH---LPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 126 (616)
Q Consensus 52 L~~L~l~~c~~l~~~~p~~---~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (616)
|++|++++.. .+.||.. ++.|+.|.++++. +.+.+...+..|+++.+..+.....
T Consensus 47 L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l------------------ 106 (1081)
T KOG0618|consen 47 LKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL------------------ 106 (1081)
T ss_pred eEEeeccccc--cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC------------------
Confidence 6666665543 2244432 2445555555543 3334445555555555555543332
Q ss_pred CcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcE
Q 007138 127 SNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEY 206 (616)
Q Consensus 127 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 206 (616)
|.++..++.|...+++.+.+ ...+..+..+..+..+..+++..+..+ +. ..++.
T Consensus 107 ----------P~~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~l---------g~-----~~ik~ 160 (1081)
T KOG0618|consen 107 ----------PASISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRL---------GQ-----TSIKK 160 (1081)
T ss_pred ----------chhHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhh---------cc-----ccchh
Confidence 23344444444444444433 122233344455555554444222222 11 22666
Q ss_pred EEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCC
Q 007138 207 LRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286 (616)
Q Consensus 207 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 286 (616)
+++..+...+.++..+..+++ .|++++|. +. .-....+++|+.+....+. +..+. ...++++.|+..+|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~-~~dls~~~~l~~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-ME-VLDLSNLANLEVLHCERNQ-LSELE-----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccch-hh-hhhhhhccchhhhhhhhcc-cceEE-----ecCcchheeeeccCc
Confidence 666666665566666555555 57777764 33 3334456777777666654 22221 223556666666554
Q ss_pred CCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCc
Q 007138 287 SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPS 366 (616)
Q Consensus 287 ~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~ 366 (616)
+........+.+++.++++.. ++..+ |+++.. +.+|+.+.+
T Consensus 231 -l~~~~~~p~p~nl~~~dis~n-~l~~l--p~wi~~-----~~nle~l~~------------------------------ 271 (1081)
T KOG0618|consen 231 -LTTLDVHPVPLNLQYLDISHN-NLSNL--PEWIGA-----CANLEALNA------------------------------ 271 (1081)
T ss_pred -ceeeccccccccceeeecchh-hhhcc--hHHHHh-----cccceEecc------------------------------
Confidence 223333344445555555554 33333 333333 444444444
Q ss_pred ccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC--------------
Q 007138 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-------------- 432 (616)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------- 432 (616)
..|.. ..+|..+...++|+.|.+..|. ++.+|....++++|++|++..| ++..+|..
T Consensus 272 ------n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 272 ------NHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ------cchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhh
Confidence 44422 3344444444444444444432 3444444444444444444443 33333221
Q ss_pred ------------CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEE
Q 007138 433 ------------GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTI 500 (616)
Q Consensus 433 ------------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i 500 (616)
....+.|+.|++.+ +.+++.. +..+.++++|+.|++++|.... .....+.++..|++|++
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c---~p~l~~~~hLKVLhLsyNrL~~----fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLAN-NHLTDSC---FPVLVNFKHLKVLHLSYNRLNS----FPASKLRKLEELEELNL 414 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhc-Ccccccc---hhhhccccceeeeeeccccccc----CCHHHHhchHHhHHHhc
Confidence 11223566666666 5555432 2255667777777777774221 11113456677777777
Q ss_pred ecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCc-CCcceEE
Q 007138 501 RGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLP-SSLLQLQ 578 (616)
Q Consensus 501 ~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~ 578 (616)
+|| +++.++.... .+..|++|...+ +.+...| .+.+++.|+.+|++. |+|+.+-.. ..+ |+|++|+
T Consensus 415 SGN--kL~~Lp~tva-------~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 415 SGN--KLTTLPDTVA-------NLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred ccc--hhhhhhHHHH-------hhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 776 7777776653 567777777766 5677777 666777778888774 777764442 334 6788888
Q ss_pred EcCCch
Q 007138 579 IYCCPL 584 (616)
Q Consensus 579 i~~c~~ 584 (616)
++|+++
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 887764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.4e-21 Score=194.37 Aligned_cols=369 Identities=15% Similarity=0.217 Sum_probs=271.3
Q ss_pred CCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCC
Q 007138 134 GPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCE 213 (616)
Q Consensus 134 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 213 (616)
+.+|.....++.+.-+.+..... ...++-++.+.+|++|.++.+. +..+.. .+..+ +.|+.+.+..|.
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~-L~~vhG-----ELs~L----p~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQ-LISVHG-----ELSDL----PRLRSVIVRDNN 89 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhh-hHhhhh-----hhccc----hhhHHHhhhccc
Confidence 45666655555544443333332 1344556899999999998854 444433 36666 889999998876
Q ss_pred CCc-ccccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc
Q 007138 214 GLV-KLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI 291 (616)
Q Consensus 214 ~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 291 (616)
.-. .+|..+-++..|..|++++| .++..| .+....++-.|++++|. ++.||.... .++..|-.|+++++ .++.+
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~N-rLe~L 165 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNN-RLEML 165 (1255)
T ss_pred cccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccc-hhhhc
Confidence 533 68888889999999999998 588888 45568899999999887 777876543 56678888899875 46666
Q ss_pred ccc-CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEE
Q 007138 292 AAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 370 (616)
Q Consensus 292 ~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 370 (616)
|+. ..+..|+.|.+++++ +..+.+. ....++.|+.|.+++-+.- ...+|.++..+ .+|..+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NP-L~hfQLr------QLPsmtsL~vLhms~TqRT-----l~N~Ptsld~l------~NL~dv 227 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNP-LNHFQLR------QLPSMTSLSVLHMSNTQRT-----LDNIPTSLDDL------HNLRDV 227 (1255)
T ss_pred CHHHHHHhhhhhhhcCCCh-hhHHHHh------cCccchhhhhhhcccccch-----hhcCCCchhhh------hhhhhc
Confidence 654 556688899998884 2222111 1122566777777773322 25677888777 899999
Q ss_pred EecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 371 YVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++.| .+..+|..+..+++|+.|++++|. ++.+....+...+|+.|.++.| .+..+|.....++.|+.|.+.+ +.+
T Consensus 228 DlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL 303 (1255)
T KOG0444|consen 228 DLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKL 303 (1255)
T ss_pred ccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-Ccc
Confidence 99987 556688889999999999999976 6667666777889999999998 7889998887778999999888 566
Q ss_pred c-cchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccce
Q 007138 451 E-GGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTT 529 (616)
Q Consensus 451 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~ 529 (616)
+ ..+|. .++++.+|+.+..++|..+. .++++..+++|++|.++.| .+..+|..+ ..++.|++
T Consensus 304 ~FeGiPS---GIGKL~~Levf~aanN~LEl-----VPEglcRC~kL~kL~L~~N--rLiTLPeaI-------HlL~~l~v 366 (1255)
T KOG0444|consen 304 TFEGIPS---GIGKLIQLEVFHAANNKLEL-----VPEGLCRCVKLQKLKLDHN--RLITLPEAI-------HLLPDLKV 366 (1255)
T ss_pred cccCCcc---chhhhhhhHHHHhhcccccc-----CchhhhhhHHHHHhccccc--ceeechhhh-------hhcCCcce
Confidence 4 23343 67889999999999887543 5678899999999999986 788888876 47899999
Q ss_pred EecccCccccccccccccCccccEEEec
Q 007138 530 LWISRFPNLERLSSSIVDLQNLTELVLV 557 (616)
Q Consensus 530 L~l~~c~~l~~i~~~~~~~~~L~~L~l~ 557 (616)
||+..++++..=|.--..-++|+.-+|.
T Consensus 367 LDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred eeccCCcCccCCCCcchhhhcceeeecc
Confidence 9999999988765422222455544443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.1e-22 Score=192.12 Aligned_cols=477 Identities=20% Similarity=0.207 Sum_probs=218.9
Q ss_pred CcceEeeccCCCcccccC--CCCCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCC
Q 007138 51 KLRELHIISCSKLQGTFP--EHLPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 126 (616)
Q Consensus 51 ~L~~L~l~~c~~l~~~~p--~~~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (616)
.|+.+.++.+. +.-..+ ..++.|.+|++.++. .++++++++..++.++++++.....+.. +++...+.+.+.
T Consensus 46 ~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~---i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ---IGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH---Hhhhhhhhhhhc
Confidence 45666666654 221122 235566677776665 3456677777777777777765543321 111111111111
Q ss_pred CcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcE
Q 007138 127 SNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEY 206 (616)
Q Consensus 127 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 206 (616)
..+.. .+++.++..+-.+...+-.++.. ...++.+.++.+|..+++.++. ++.+++. .+. + ..|++
T Consensus 122 s~n~~--~el~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~-l~~l~~~----~i~-m----~~L~~ 187 (565)
T KOG0472|consen 122 SSNEL--KELPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNK-LKALPEN----HIA-M----KRLKH 187 (565)
T ss_pred cccce--eecCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhccccc-hhhCCHH----HHH-H----HHHHh
Confidence 11100 12223333333333333333332 1333444555555555555533 4444433 122 3 55666
Q ss_pred EEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCC
Q 007138 207 LRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286 (616)
Q Consensus 207 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 286 (616)
||...|-. +.+|+.++.+.+|+-|+++.| ++..+|++..+..|++++++.|. ++-++... +..++++..|++.++
T Consensus 188 ld~~~N~L-~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~-~~~L~~l~vLDLRdN- 262 (565)
T KOG0472|consen 188 LDCNSNLL-ETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH-LKHLNSLLVLDLRDN- 262 (565)
T ss_pred cccchhhh-hcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHH-hcccccceeeecccc-
Confidence 66665433 566666777777777777665 46666666666667777666654 44444332 134566666666654
Q ss_pred CCcccccc-CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcc--c-ccccCCCccccccccc--
Q 007138 287 SLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLT--C-IFSKNELPATLESLEV-- 360 (616)
Q Consensus 287 ~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~-~~~~~~~~~~l~~l~~-- 360 (616)
+++..|.. ..+++|+.|+++++ .++.+ |...+. + .|+.|.+.+.+--+ . +.. +.....++.+.-
T Consensus 263 klke~Pde~clLrsL~rLDlSNN-~is~L--p~sLgn-----l-hL~~L~leGNPlrTiRr~ii~-~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 263 KLKEVPDEICLLRSLERLDLSNN-DISSL--PYSLGN-----L-HLKFLALEGNPLRTIRREIIS-KGTQEVLKYLRSKI 332 (565)
T ss_pred ccccCchHHHHhhhhhhhcccCC-ccccC--Cccccc-----c-eeeehhhcCCchHHHHHHHHc-ccHHHHHHHHHHhh
Confidence 35555544 33455666666665 45544 433333 2 34555444422100 0 000 000000000000
Q ss_pred -CCCCCcccEEEecCCC-CchhhhhhccCCCCccEEEccccccccccccccc---CCCCCcEEEeccCCCCcccCCCCCC
Q 007138 361 -GNLPPSLKSLYVYGCS-KLESIAERLDNNTSLETISIERCGNLKILPSGLH---NLRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 361 -~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
..-+.+-+.=.-..-. .-+.+| .....-+.+.|++++ ..++.+|.... .-.-....+++.| .+..+|.....
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~ 409 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVE 409 (565)
T ss_pred ccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHH
Confidence 0000000000000000 000000 111122444455544 23444444221 1112344555554 34444443322
Q ss_pred CCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccccccc
Q 007138 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDK 515 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~ 515 (616)
+..+.+.-+...+.+ +-+|. .+..+++|..|++++|.... .+..+..+..|+.|+|+.| ....+|....
T Consensus 410 lkelvT~l~lsnn~i-sfv~~---~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~N--rFr~lP~~~y 478 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKI-SFVPL---ELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFN--RFRMLPECLY 478 (565)
T ss_pred HHHHHHHHHhhcCcc-ccchH---HHHhhhcceeeecccchhhh-----cchhhhhhhhhheeccccc--ccccchHHHh
Confidence 212221111121222 22222 33444455555555553211 1123345556777777775 5666666542
Q ss_pred ccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCc
Q 007138 516 RLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCP 583 (616)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 583 (616)
.+..++.+-.++ ++++++++ ++..+.+|++|++++ +.++.+|+. +.+.+|++|+++|+|
T Consensus 479 -------~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 479 -------ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -------hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 233344443443 66777766 377777777888777 777777774 567777778777776
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.7e-20 Score=177.46 Aligned_cols=458 Identities=20% Similarity=0.213 Sum_probs=258.0
Q ss_pred ccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCce
Q 007138 47 EWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSV 121 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 121 (616)
.++..|.+|++.+.. +. .+|. .+.+++.++++.+. .++..+...+.|+.++.+++.....+.. ++....+
T Consensus 65 ~nL~~l~vl~~~~n~-l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~---i~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNK-LS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS---IGRLLDL 139 (565)
T ss_pred hcccceeEEEeccch-hh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch---HHHHhhh
Confidence 446666666666654 33 3443 23344555555544 3345555566666666665554442221 1111111
Q ss_pred eecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhcc
Q 007138 122 VCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS 201 (616)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~ 201 (616)
...+..++-. .++|..+.++..+...+...+.. .+.++.... |+.|++|+...+ -++.+|+. ++.+
T Consensus 140 ~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~-----lg~l---- 205 (565)
T KOG0472|consen 140 EDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA-MKRLKHLDCNSN-LLETLPPE-----LGGL---- 205 (565)
T ss_pred hhhhcccccc--ccCchHHHHHHHHHHhhccccch-hhCCHHHHH-HHHHHhcccchh-hhhcCChh-----hcch----
Confidence 1111111111 13455556666665555555544 234555544 999999987664 36777765 6777
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-C-CCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-V-ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
.+|..|++..|+. ..+| .|..|..|++|++..| .++.+|. . ..++++..|++.+|+ +++.|... .-+.+|+.
T Consensus 206 ~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~--clLrsL~r 279 (565)
T KOG0472|consen 206 ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI--CLLRSLER 279 (565)
T ss_pred hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccCchHH--HHhhhhhh
Confidence 8899999999876 6888 6899999999999987 5887873 3 359999999999987 88888764 34477999
Q ss_pred EEeccCCCCcccccc-CCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEec-cCCCCccc---------ccc
Q 007138 280 LSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDI-SSCPSLTC---------IFS 347 (616)
Q Consensus 280 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l-~~c~~l~~---------~~~ 347 (616)
|+++++. +..++.. +.. .|+.|.+.+++ ++.+ ... +..++. .-|++|.= ..|..+.. ..+
T Consensus 280 LDlSNN~-is~Lp~sLgnl-hL~~L~leGNP-lrTi--Rr~ii~~gT~---~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYSLGNL-HLKFLALEGNP-LRTI--RREIISKGTQ---EVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hcccCCc-cccCCcccccc-eeeehhhcCCc-hHHH--HHHHHcccHH---HHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 9999754 6666544 444 77778777774 3332 110 000000 01222210 00111110 001
Q ss_pred cCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCC---CCccEEEcccccccccccccccCCCCCcEEEeccCC
Q 007138 348 KNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN---TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCG 424 (616)
Q Consensus 348 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~ 424 (616)
.+.+|..-.. -+.+.|++++- ....+|...... .-.+.++++.|. +.++|..+..++.+...-+..+.
T Consensus 352 ~~~~~~~~~~-------i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 352 SESFPDIYAI-------ITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred CCcccchhhh-------hhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcC
Confidence 1112111000 23445555543 233344332221 235666776654 55566655555554443333333
Q ss_pred CCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 425 NLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 425 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
.+..+|......++|..|++++ +-+.+ +|. .++.+..|+.++++.|. +..-++.+..+.-|+.+-.++|
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~N-N~Ln~-LP~---e~~~lv~Lq~LnlS~Nr-----Fr~lP~~~y~lq~lEtllas~n- 491 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSN-NLLND-LPE---EMGSLVRLQTLNLSFNR-----FRMLPECLYELQTLETLLASNN- 491 (565)
T ss_pred ccccchHHHHhhhcceeeeccc-chhhh-cch---hhhhhhhhheecccccc-----cccchHHHhhHHHHHHHHhccc-
Confidence 4444454444555666666665 33332 332 34455556777776663 1112222223334555555544
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..++..+ ...+..|.+||+.+ +.+..+|+.++++++|++|++.| +.++ .|.
T Consensus 492 -qi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g-Npfr-~Pr 544 (565)
T KOG0472|consen 492 -QIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG-NPFR-QPR 544 (565)
T ss_pred -cccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecC-CccC-CCH
Confidence 777777763 24789999999998 78999999999999999999999 5555 454
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.7e-13 Score=147.73 Aligned_cols=258 Identities=28% Similarity=0.360 Sum_probs=146.9
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+-..|+++++.. +.+|..+. ++|+.|.+.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 4567888888754 67887664 47888888886 5777775 36788888888774 6666532 25677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. +..++. .+++|+.|+++++ +++.+ |.. .++|++|++++ +.++. .+. +
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~L--P~~--------p~~L~~LdLS~-N~L~~-Lp~--l---------- 320 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------PPGLQELSVSD-NQLAS-LPA--L---------- 320 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC-ccccc--ccc--------ccccceeECCC-Ccccc-CCC--C----------
Confidence 77653 444442 3456777777666 44444 321 23566666666 23332 110 1
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
|.+|+.|++++|.. ..+|.. ..+|+.|++++|. ++.+|.. .++|+.|++++| .+..+|... .+|+.
T Consensus 321 --p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l~---~~L~~ 386 (788)
T PRK15387 321 --PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNN-RLTSLPALP---SGLKE 386 (788)
T ss_pred --cccccccccccCcc-cccccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcc-ccccCcccc---cccce
Confidence 13455555555432 233321 1256666665543 3344432 234555555554 344444321 14555
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++ +.+++. | ...++|+.|++++| .+..+|.
T Consensus 387 LdLs~-N~Lt~L-P----------------------------------~l~s~L~~LdLS~N--~LssIP~--------- 419 (788)
T PRK15387 387 LIVSG-NRLTSL-P----------------------------------VLPSELKELMVSGN--RLTSLPM--------- 419 (788)
T ss_pred EEecC-CcccCC-C----------------------------------CcccCCCEEEccCC--cCCCCCc---------
Confidence 55555 334321 1 11246777777775 5666654
Q ss_pred CCCCccceEecccCccccccccccccCccccEEEecCCCCCc
Q 007138 522 PLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 563 (616)
.+.+|+.|++++ ++++.+|..+..+++|+.|++++ |.+.
T Consensus 420 -l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 420 -LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG-NPLS 458 (788)
T ss_pred -chhhhhhhhhcc-CcccccChHHhhccCCCeEECCC-CCCC
Confidence 235677777777 56777777777778888888887 4443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=2e-12 Score=139.62 Aligned_cols=255 Identities=27% Similarity=0.336 Sum_probs=149.6
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEE
Q 007138 226 SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI 305 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 305 (616)
.+-..|+++++ .++.+|. ...++|+.|++.+|. ++.+|.. .++|++|+++++ .++.++. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 45667888887 5777875 235689999998876 6666642 367888888775 4665552 3457777777
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL 385 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (616)
+++ .+..+ +.. ..+|+.|+++++ +++. + |.. |++|+.|++++|... .+|..
T Consensus 270 s~N-~L~~L--p~l--------p~~L~~L~Ls~N-~Lt~-L-----P~~---------p~~L~~LdLS~N~L~-~Lp~l- 320 (788)
T PRK15387 270 FSN-PLTHL--PAL--------PSGLCKLWIFGN-QLTS-L-----PVL---------PPGLQELSVSDNQLA-SLPAL- 320 (788)
T ss_pred cCC-chhhh--hhc--------hhhcCEEECcCC-cccc-c-----ccc---------ccccceeECCCCccc-cCCCC-
Confidence 666 34443 221 134556666552 3332 1 110 044555555554222 23321
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+|+.|++++|. ++.+|.. ..+|+.|++++| .+..+|.. . .+|+.|++++ +.++.+ |
T Consensus 321 --p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l-p--~~L~~L~Ls~-N~L~~L-P---------- 378 (788)
T PRK15387 321 --PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPTL-P--SELYKLWAYN-NRLTSL-P---------- 378 (788)
T ss_pred --cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCCC-C--cccceehhhc-cccccC-c----------
Confidence 1234445554433 2333321 124455555444 33334321 1 1344444443 233221 1
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
....+|+.|++++| .++.+|. .+++|+.|++++ +.++.+|..
T Consensus 379 ------------------------~l~~~L~~LdLs~N--~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l- 420 (788)
T PRK15387 379 ------------------------ALPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSG-NRLTSLPML- 420 (788)
T ss_pred ------------------------ccccccceEEecCC--cccCCCC----------cccCCCEEEccC-CcCCCCCcc-
Confidence 11247899999987 6777765 357899999999 568888853
Q ss_pred ccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCc
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCP 583 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 583 (616)
...|+.|++++ |.++.+|.. ..+++|+.|++++++
T Consensus 421 --~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 35789999999 889999974 347899999999986
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=3e-12 Score=139.11 Aligned_cols=95 Identities=25% Similarity=0.393 Sum_probs=42.7
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. +.+|..+. .+|+.|++++| .++.+|. ....+|+.|++++|. +..+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMELSINR-ITELPERLP----SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEECcCCc-cCcCChhHh----CCCCEEE
Confidence 4455555555543 44554332 35555555554 3444442 123455555555554 334443321 2455555
Q ss_pred eccCCCCccccccCCCCCccEEEEecC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
++++ .+..++. ..+++|+.|++++|
T Consensus 269 Ls~N-~L~~LP~-~l~~sL~~L~Ls~N 293 (754)
T PRK15370 269 LFHN-KISCLPE-NLPEELRYLSVYDN 293 (754)
T ss_pred CcCC-ccCcccc-ccCCCCcEEECCCC
Confidence 5432 2333332 12234555555444
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.36 E-value=4e-14 Score=135.74 Aligned_cols=269 Identities=21% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 138 PRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
..++++++|.+.+|.+.+. .....+...+++|++|++..|..++.. .+..+.+.|++|++|++++|+.+..
T Consensus 161 ~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhCCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhc
Confidence 4455555555555554432 223334455555555555555555542 3444455555555555555554332
Q ss_pred --cccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-
Q 007138 218 --LPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV- 294 (616)
Q Consensus 218 --~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 294 (616)
+-....++..++.+...|| ..++.-....+...++.+..+++..|..+++...+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC-----------------------~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGC-----------------------LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred CcchHHhccchhhhhhhhccc-----------------------ccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2222333444444444444 33222211111122233333444444444333322
Q ss_pred --CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEe
Q 007138 295 --QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 372 (616)
Q Consensus 295 --~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 372 (616)
..+..|+.+..++|..+++..+.....+ +++|+.+.+..|.++++. -...+.. +. +.|+.+++
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~-----~~~L~~l~l~~c~~fsd~-~ft~l~r--------n~-~~Le~l~~ 353 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQH-----CHNLQVLELSGCQQFSDR-GFTMLGR--------NC-PHLERLDL 353 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcC-----CCceEEEeccccchhhhh-hhhhhhc--------CC-hhhhhhcc
Confidence 2234445555555554444322222222 455555555555554431 0000100 00 55666666
Q ss_pred cCCCCchh--hhhhccCCCCccEEEcccccccccc-----cccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEEc
Q 007138 373 YGCSKLES--IAERLDNNTSLETISIERCGNLKIL-----PSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLDI 444 (616)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 444 (616)
.+|..... +-....+++.|+++.++.|..++.. ...-..+..|+.+.+++|+.+..-. .....|++|+.+++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 66543321 2233455677777777777655442 2223456677778888877655321 22335667888888
Q ss_pred cCCcccccc
Q 007138 445 SDCKRLEGG 453 (616)
Q Consensus 445 ~~c~~l~~~ 453 (616)
.+|..++..
T Consensus 434 ~~~q~vtk~ 442 (483)
T KOG4341|consen 434 IDCQDVTKE 442 (483)
T ss_pred echhhhhhh
Confidence 887666543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=1.2e-11 Score=134.56 Aligned_cols=181 Identities=18% Similarity=0.248 Sum_probs=101.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|... .+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..... +|+.|++
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~--sL~~L~L 311 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPS--GITHLNV 311 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchh--hHHHHHh
Confidence 45666666665432 4444332 36666666654 3445554332 36666666665 45555543322 5666666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.++.. |.. -.++|+.|++++|.... .+..+ .++|+.|++++| .+..+|... +
T Consensus 312 s~-N~Lt~L-P~~-----l~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N--~L~~LP~~l---------p 366 (754)
T PRK15370 312 QS-NSLTAL-PET-----LPPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKN--QITVLPETL---------P 366 (754)
T ss_pred cC-CccccC-Ccc-----ccccceeccccCCcccc-----CChhh--cCcccEEECCCC--CCCcCChhh---------c
Confidence 66 345432 211 12456666666654211 01111 257777888775 556666533 4
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-----CCcCCcceEEEcCCc
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-----GLPSSLLQLQIYCCP 583 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 583 (616)
++|+.|++++| .+..+|..+. +.|+.|++++ +++..+|.. ...+.+..+++.++|
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 67888888874 5667775443 3677777777 667776652 123667777777776
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.27 E-value=3.3e-13 Score=129.49 Aligned_cols=310 Identities=18% Similarity=0.247 Sum_probs=205.2
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc-
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP- 219 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~- 219 (616)
.-|+.|.+.+|..+.. .....+...++++++|++.+|..+++ ..+..++..|.+|++|++..|..++...
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 5688899999988765 35566778899999999999988776 4677888888999999999988877432
Q ss_pred -cccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc---C
Q 007138 220 -QSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV---Q 295 (616)
Q Consensus 220 -~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~ 295 (616)
.....+++|++|+++.|+.+++- + ++.+. .+...++.+..++|...+.-... .
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~-------g-----------v~~~~-----rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGN-------G-----------VQALQ-----RGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcC-------c-----------chHHh-----ccchhhhhhhhcccccccHHHHHHHhc
Confidence 22345888888888888755441 0 11110 22333555655677544332111 3
Q ss_pred CCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCC
Q 007138 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGC 375 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~ 375 (616)
...-+..+++..|..+++..+....- .+..|+.++.++|..+++ .+...+-. .. ++|+.+.++.|
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~-----~c~~lq~l~~s~~t~~~d-~~l~aLg~---~~------~~L~~l~l~~c 330 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIAC-----GCHALQVLCYSSCTDITD-EVLWALGQ---HC------HNLQVLELSGC 330 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhh-----hhhHhhhhcccCCCCCch-HHHHHHhc---CC------CceEEEecccc
Confidence 44567777788898888763222212 256799999999998876 33222211 11 78999999999
Q ss_pred CCchhh--hhhccCCCCccEEEccccccccc--ccccccCCCCCcEEEeccCCCCccc-----CCCCCCCCCceEEEccC
Q 007138 376 SKLESI--AERLDNNTSLETISIERCGNLKI--LPSGLHNLRQLQGIKIWNCGNLVSF-----PEGGLPCAKLRRLDISD 446 (616)
Q Consensus 376 ~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~ 446 (616)
...... .....+++.|+.+++.+|..... +-..-.+++.|+.|.++.|..++.- ....-....|+.+.+++
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 865443 22345678999999999875543 2223358999999999988765533 12112335899999999
Q ss_pred CcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 447 CKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 447 c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
|+.+++.. ...+.++++|+.+++-++....... ......++|+++...+..
T Consensus 411 ~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~--i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 411 CPLITDAT---LEHLSICRNLERIELIDCQDVTKEA--ISRFATHLPNIKVHAYFA 461 (483)
T ss_pred CCCchHHH---HHHHhhCcccceeeeechhhhhhhh--hHHHHhhCccceehhhcc
Confidence 99887753 3477888999999988876332110 011224567777665543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-12 Score=109.88 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=120.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..+..|.++++ .+..+|+.+..+.+|+.|++++|. ++++|..+..+++|+.|.++-| .+...|.+...++.|+.||+
T Consensus 33 s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 55667777776 445677788888899999998755 7888888999999999998765 66778888777788999999
Q ss_pred cCCcccc-cchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 445 SDCKRLE-GGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 445 ~~c~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
.+ +++. ..+|. .|..+.-|+.|++++| ..+.+|...+ .
T Consensus 110 ty-nnl~e~~lpg-------------------------------nff~m~tlralyl~dn--dfe~lp~dvg-------~ 148 (264)
T KOG0617|consen 110 TY-NNLNENSLPG-------------------------------NFFYMTTLRALYLGDN--DFEILPPDVG-------K 148 (264)
T ss_pred cc-cccccccCCc-------------------------------chhHHHHHHHHHhcCC--CcccCChhhh-------h
Confidence 88 4443 33332 3445566777777765 5667777664 5
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
+++|+.|.+.+ +.+-++|..++.++.|++|+|++ ++++-+|++
T Consensus 149 lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 149 LTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred hcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence 78888888888 66778888888899999999998 888887773
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=3e-11 Score=121.52 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=17.6
Q ss_pred hcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 461 LHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 461 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
+..+.+|+.|++++|.....+.......+..+++|++|++++|
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3444455555555544222111111112233345555555553
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=4.5e-10 Score=124.25 Aligned_cols=252 Identities=22% Similarity=0.266 Sum_probs=146.5
Q ss_pred CCCCCCCcEEEecCCCC-cccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCC
Q 007138 137 KPRIPKLEELEIKNIEN-ETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGL 215 (616)
Q Consensus 137 ~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 215 (616)
....++|+.|-+.+-.. .. ....++|..++.|+.||+++|..+..+|.. ++.+ -+||+|+++++..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~---~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I- 607 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLL---EISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI- 607 (889)
T ss_pred CCCCCccceEEEeecchhhh---hcCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-
Confidence 35566888888876542 22 267778999999999999999988888876 8888 8999999999664
Q ss_pred cccccccCCCCCccEEEEcCCCCCCCCCCCCC-CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc
Q 007138 216 VKLPQSSLSLSSLREIEICKCSSLVSFPEVAL-PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 294 (616)
Q Consensus 216 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 294 (616)
..+|..+++++.|.+|++..+..+..++.+.. +++||+|.+.....-.+.........+.+|+.+....... ..+...
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l 686 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDL 686 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhh
Confidence 79999999999999999999877777765544 9999999997654111111110113335555555543222 111111
Q ss_pred CCCCCc----cEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEE
Q 007138 295 QLPPSL----KQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 370 (616)
Q Consensus 295 ~~~~~L----~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 370 (616)
...+.| +.+.+.++.. ... ..... .+.+|+.|.+.+|........ .. .....+. .+ +++..+
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~-~~~--~~~~~-----~l~~L~~L~i~~~~~~e~~~~--~~-~~~~~~~--~f-~~l~~~ 752 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSK-RTL--ISSLG-----SLGNLEELSILDCGISEIVIE--WE-ESLIVLL--CF-PNLSKV 752 (889)
T ss_pred hhhHHHHHHhHhhhhccccc-cee--ecccc-----cccCcceEEEEcCCCchhhcc--cc-cccchhh--hH-HHHHHH
Confidence 111122 2222222211 111 12222 367899999998876542110 00 0000000 00 344444
Q ss_pred EecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcE
Q 007138 371 YVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417 (616)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 417 (616)
.+.+|...... .+..-.++|+.|.+..|..+..+......+..++.
T Consensus 753 ~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 753 SILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred Hhhcccccccc-chhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 45555444322 22233458888888887777665444444444443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=4.7e-11 Score=120.11 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=109.6
Q ss_pred CcccEEEecCCCCchhhhhhccCC---CCccEEEcccccccc----cccccccCC-CCCcEEEeccCCCCc----ccCCC
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNN---TSLETISIERCGNLK----ILPSGLHNL-RQLQGIKIWNCGNLV----SFPEG 432 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~----~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~ 432 (616)
++|+.|++++|......+..+..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|.... .+...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 566666666665543333333222 347777777765431 122234455 677777777764221 11112
Q ss_pred CCCCCCceEEEccCCccccc-chhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc--
Q 007138 433 GLPCAKLRRLDISDCKRLEG-GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS-- 509 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~-- 509 (616)
...+++|++|++++| .+++ ..+.....+..+++|+.|++++|.....+.......+..+++|++|++++| .+..
T Consensus 161 ~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~ 237 (319)
T cd00116 161 LRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAG 237 (319)
T ss_pred HHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHH
Confidence 223346777777774 3443 222222344555677888887775322222222224566788888888886 2322
Q ss_pred ccccccccCCCCCCCCccceEecccCcccc-----ccccccccCccccEEEecCCCCCcccCCCC------Cc-CCcceE
Q 007138 510 FPLEDKRLGTALPLPASLTTLWISRFPNLE-----RLSSSIVDLQNLTELVLVNCPKLKYFPEKG------LP-SSLLQL 577 (616)
Q Consensus 510 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~------~~-~~L~~L 577 (616)
+......+ ....+.|++|++.+|. ++ .+...+..+++|+.+++++ +.+.+-+... .. +.|+++
T Consensus 238 ~~~l~~~~---~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 238 AAALASAL---LSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred HHHHHHHH---hccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhc
Confidence 11101000 0023688888888864 32 2333455667888888888 5555432210 11 456666
Q ss_pred EEcCC
Q 007138 578 QIYCC 582 (616)
Q Consensus 578 ~i~~c 582 (616)
+|.+.
T Consensus 313 ~~~~~ 317 (319)
T cd00116 313 WVKDD 317 (319)
T ss_pred ccCCC
Confidence 66554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=1e-11 Score=118.51 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.|..+++|+..+++++.+ ..+.++.|+.+++|..|.+.+...|++++.. .+..| ..|+.|.+.-|...-..
T Consensus 86 aF~~l~~LRrLdLS~N~I-s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~----~F~gL----~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNI-SFIAPDAFKGLASLLSLVLYGNNKITDLPKG----AFGGL----SSLQRLLLNANHINCIR 156 (498)
T ss_pred hccchhhhceecccccch-hhcChHhhhhhHhhhHHHhhcCCchhhhhhh----HhhhH----HHHHHHhcChhhhcchh
Confidence 456666666666666654 3456666777777777777776667777765 35555 56666666665553333
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCD 260 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~ 260 (616)
...+..+++|..|.+.+| .+..++. +..+..++.+.+..++
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 445667777777777776 3555542 3336667777766665
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.91 E-value=3.9e-11 Score=101.30 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=114.7
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+.+++.|.++.|. +..+|..+..+.+|+.|.+++| .++.+|....+++.|+.|.+.- +++
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl--------------- 91 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRL--------------- 91 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhh---------------
Confidence 344567777777744 5666667777777777777776 5667776666666677766654 334
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
.+.+.+|..+|.|+.|++.+|+..-..+|..+ ..++.|+.|.+++ +..+.+|..+
T Consensus 92 -----------------~~lprgfgs~p~levldltynnl~e~~lpgnf-------f~m~tlralyl~d-ndfe~lp~dv 146 (264)
T KOG0617|consen 92 -----------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNF-------FYMTTLRALYLGD-NDFEILPPDV 146 (264)
T ss_pred -----------------hcCccccCCCchhhhhhccccccccccCCcch-------hHHHHHHHHHhcC-CCcccCChhh
Confidence 22344889999999999999866666777654 4788999999999 7789999999
Q ss_pred ccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCC
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCC 582 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c 582 (616)
+++++|+.|.++. +.+-++|.+ +.+..|++|+|-|+
T Consensus 147 g~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 147 GKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc
Confidence 9999999999999 888888874 44667777777765
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-09 Score=119.85 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=93.0
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCC-ccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
.....+.+.+.+...... ..-..++.|++|-+.+... +..++. +.+..+ +.|+.||+++|.....
T Consensus 521 ~~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~----~ff~~m----~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISG----EFFRSL----PLLRVLDLSGNSSLSK 586 (889)
T ss_pred chhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCH----HHHhhC----cceEEEECCCCCccCc
Confidence 344556666554333221 1124456788888877653 333322 236666 9999999999999899
Q ss_pred cccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEecc
Q 007138 218 LPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHG 284 (616)
Q Consensus 218 ~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 284 (616)
+|..++.+-+|++|+++++ .+..+| .+..+..|.+|++..+..+..++... ..+++|+.|.+..
T Consensus 587 LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred CChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 9999999999999999997 688888 55679999999999988777775442 3478899888864
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=7.1e-11 Score=112.81 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=54.8
Q ss_pred ccCCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCC
Q 007138 200 LSCRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSS 276 (616)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 276 (616)
+|+.-..++|..|.+ +.+|+ .|+.+++|+.|++++| .++.|.+ +..+++|-.|-++++.++++++...+ ..+..
T Consensus 65 LP~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSS 141 (498)
T ss_pred CCCcceEEEeccCCc-ccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHH
Confidence 456778889988776 66655 6788999999999987 5666653 33477788888888777888876532 33344
Q ss_pred ccEEEe
Q 007138 277 LEILSI 282 (616)
Q Consensus 277 L~~L~l 282 (616)
++-|.+
T Consensus 142 lqrLll 147 (498)
T KOG4237|consen 142 LQRLLL 147 (498)
T ss_pred HHHHhc
Confidence 444433
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=99.45 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred ccCCCcceEeeccCCCc-cc--ccCCCCCCccEEeecCCcc-----hhhhhcCCCCccEEEeCCCcceeecccccccCCC
Q 007138 47 EWFPKLRELHIISCSKL-QG--TFPEHLPALEMLVIEGCEE-----LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l-~~--~~p~~~~~L~~L~l~~c~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 118 (616)
.++++|+.+.+.+|+-- .+ .....||+++.|+|+++-. +......+|+|+.|+++.|........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence 56888888888887511 01 1223578888888877741 113445688888888888765431110
Q ss_pred CceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhh
Q 007138 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 198 (616)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~ 198 (616)
..-..++.|+.|.+..|.-. |.........+|+|+.|++..+..+...... ..
T Consensus 191 ----------------~~~~~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~--- 243 (505)
T KOG3207|consen 191 ----------------NTTLLLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEIILIKATS-----TK--- 243 (505)
T ss_pred ----------------cchhhhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhcccccceecch-----hh---
Confidence 11124556666666666544 2244444556666666666665322211110 11
Q ss_pred hccCCCcEEEccCCCCCcccc--cccCCCCCccEEEEcCC
Q 007138 199 ELSCRLEYLRLSNCEGLVKLP--QSSLSLSSLREIEICKC 236 (616)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 236 (616)
.++.|+.|+|++|+.++ ++ ...+.++.|+.|+++.|
T Consensus 244 -i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 244 -ILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred -hhhHHhhccccCCcccc-cccccccccccchhhhhcccc
Confidence 12456666666665533 22 23555666666666655
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.5e-08 Score=96.08 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCCCccEEeecCCcc----hhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcE
Q 007138 70 HLPALEMLVIEGCEE----LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEE 145 (616)
Q Consensus 70 ~~~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 145 (616)
.+.+|+++.|.+|+- ...-...|+.++.||++.+-...|.... .+...+++|+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~----------------------~i~eqLp~Le~ 176 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL----------------------KIAEQLPSLEN 176 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH----------------------HHHHhcccchh
Confidence 578899999998872 2235678999999999999887765543 23356777777
Q ss_pred EEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC
Q 007138 146 LEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL 225 (616)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l 225 (616)
|.++.-.-... .....-..+++|+.|.++.|. ++ + .++..+...|++|+.|++.+|............+
T Consensus 177 LNls~Nrl~~~---~~s~~~~~l~~lK~L~l~~CG-ls--~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 177 LNLSSNRLSNF---ISSNTTLLLSHLKQLVLNSCG-LS--W-----KDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred cccccccccCC---ccccchhhhhhhheEEeccCC-CC--H-----HHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 77654333222 222233478999999999997 44 2 3466666777999999999996544333345568
Q ss_pred CCccEEEEcCCCCCCCCC---CCCCCCCCcEEEccCCCCccccchhh-----ccCCCCCccEEEeccCCC--CccccccC
Q 007138 226 SSLREIEICKCSSLVSFP---EVALPSKLKNIWISTCDALKSLPEAW-----MCDTNSSLEILSIHGCRS--LTYIAAVQ 295 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~~~~--l~~~~~~~ 295 (616)
..|+.|++++|+. .+++ ..+.++.|+.|+++.|. +.++...- ....+++|+.|++..++. +..+....
T Consensus 246 ~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 246 QTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hHHhhccccCCcc-cccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 8899999999864 4443 55679999999998876 54443211 113459999999987653 33333335
Q ss_pred CCCCccEEEEecC
Q 007138 296 LPPSLKQLSISDC 308 (616)
Q Consensus 296 ~~~~L~~L~l~~~ 308 (616)
..++|+.+.+...
T Consensus 324 ~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 324 TLENLKHLRITLN 336 (505)
T ss_pred ccchhhhhhcccc
Confidence 5567777665443
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=7.1e-07 Score=88.91 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecCCCC-CcccCCCCCcCCcceEEEcCCchhh
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPK-LKYFPEKGLPSSLLQLQIYCCPLIA 586 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~L~~L~i~~c~~l~ 586 (616)
.+++|++|++.+|..+. +|..+. .+|+.|++..+.. --.++...+++++ .|++.+|..+.
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 35667777777666442 332222 4667777665321 1123333445556 66666665443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=4.7e-08 Score=86.66 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=32.6
Q ss_pred ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc-ccCccccEEEecCCCCCcccCCC-
Q 007138 491 RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI-VDLQNLTELVLVNCPKLKYFPEK- 568 (616)
Q Consensus 491 ~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~l~~c~~l~~l~~~- 568 (616)
.+.+|++|++++| .++.++.-. .++.|++|++++ +.++++...+ ..+|+|++|++++ |+++++...
T Consensus 40 ~l~~L~~L~Ls~N--~I~~l~~l~--------~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~ 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNN--QITKLEGLP--------GLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELE 107 (175)
T ss_dssp T-TT--EEE-TTS----S--TT------------TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCG
T ss_pred hhcCCCEEECCCC--CCccccCcc--------ChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhH
Confidence 4567777777776 566655433 467777777777 5677775443 3577777777777 777666553
Q ss_pred --CCcCCcceEEEcCCchh
Q 007138 569 --GLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 569 --~~~~~L~~L~i~~c~~l 585 (616)
..+++|++|++.++|-.
T Consensus 108 ~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGGG-TT--EEE-TT-GGG
T ss_pred HHHcCCCcceeeccCCccc
Confidence 22577777777777743
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.3e-09 Score=96.51 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=33.0
Q ss_pred CcccEEEecCCCCch-hhhhhccCCCCccEEEccccccccc-ccccccCCCCCcEEEeccC
Q 007138 365 PSLKSLYVYGCSKLE-SIAERLDNNTSLETISIERCGNLKI-LPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~l~~l~~L~~L~l~~~ 423 (616)
|++.+|++++|..+. .....+..++.|++|.++.|+.+.- -...+...|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 455555555554332 2233455666777777777765321 1113466777777777766
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.5e-08 Score=91.20 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc---CCCCCccEEEEecCCC-CCccccccccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV---QLPPSLKQLSISDCDN-IRTLTVEEGIQSS 323 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~ 323 (616)
-.+|+.++++.|.+++.........++..|.+|+++.|......... ...++|+.|++++|.+ +..-++.....
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~-- 310 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR-- 310 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH--
Confidence 33444444444444444443333344555666666655433322111 3445677777777642 21111122222
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhh---hccCCCCccEEEccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAE---RLDNNTSLETISIERCG 400 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 400 (616)
.+++|.+|++++|..++. + ....+-.+ +.|++|.++.|..+. |. .+...|.|..|++.+|-
T Consensus 311 ---rcp~l~~LDLSD~v~l~~----~-~~~~~~kf------~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 ---RCPNLVHLDLSDSVMLKN----D-CFQEFFKF------NYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---hCCceeeeccccccccCc----h-HHHHHHhc------chheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 377888888888877765 1 11111111 778888888886542 32 35567888999988876
Q ss_pred ccccccccccCCCCCc
Q 007138 401 NLKILPSGLHNLRQLQ 416 (616)
Q Consensus 401 ~l~~~~~~l~~l~~L~ 416 (616)
..+........+++|+
T Consensus 375 sdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 375 SDTTMELLKEMLSHLK 390 (419)
T ss_pred CchHHHHHHHhCcccc
Confidence 5544432334455544
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=5e-08 Score=98.02 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=132.5
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCC
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDC 447 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 447 (616)
...+++.|.+ ..+|..+..|..|+.+.++.|. +..+|..+.++..|+.++++.| .+..+|.....+ -|+.+-+++
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec-
Confidence 3445555533 3466666666677777777644 6677888888888888888877 567777777666 588888877
Q ss_pred cccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCcc
Q 007138 448 KRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASL 527 (616)
Q Consensus 448 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L 527 (616)
++++...+ .++...+|..||.+.|.... .+.-+..+.+|+.|.+..| .+..+|.+. ..-.|
T Consensus 153 Nkl~~lp~----~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn--~l~~lp~El--------~~LpL 213 (722)
T KOG0532|consen 153 NKLTSLPE----EIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRN--HLEDLPEEL--------CSLPL 213 (722)
T ss_pred CccccCCc----ccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhh--hhhhCCHHH--------hCCce
Confidence 66765433 34566788888888776332 2234567788888888876 777888776 34568
Q ss_pred ceEecccCccccccccccccCccccEEEecCCCCCcccCC----CCCcCCcceEEEcCC
Q 007138 528 TTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE----KGLPSSLLQLQIYCC 582 (616)
Q Consensus 528 ~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~c 582 (616)
..||++. +++..||..+.++..|++|-+.+ |-|++=|. .+...-.++|++.-|
T Consensus 214 i~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 8888885 78999998899999999999987 77777544 233344556666555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=7e-07 Score=82.83 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=70.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..|+++++++| .+..+..+..-.|.++.|+++.|.. ..+. .+..+++|.+|++++| .+..+......+.+.+.|.+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 56777777776 3444555555566777888877653 3332 2667777788888776 44444333333446677777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
+. +.+. ..+.++++-+|..||+++|.++. .....++.++|.|+++.+.+|
T Consensus 360 a~-N~iE-----~LSGL~KLYSLvnLDl~~N~Ie~---ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQ-NKIE-----TLSGLRKLYSLVNLDLSSNQIEE---LDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hh-hhHh-----hhhhhHhhhhheeccccccchhh---HHHhcccccccHHHHHhhcCC
Confidence 66 3442 23455566666666666665332 112234455555555555553
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.1e-06 Score=77.90 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCcEEEccCCCCCcccccccC-CCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSL-SLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEIL 280 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 280 (616)
.++++|++.+|.. ..+. .++ .+.+|+.|++++| .++.++.+..++.|++|++++|. ++++...+. ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-KNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-HH-TT--EE
T ss_pred ccccccccccccc-cccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH-HhCCcCCEE
Confidence 3466666666554 3332 343 3566666666666 45556555556666666666665 445533211 234666666
Q ss_pred EeccCCCCcccc---ccCCCCCccEEEEecCC
Q 007138 281 SIHGCRSLTYIA---AVQLPPSLKQLSISDCD 309 (616)
Q Consensus 281 ~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~ 309 (616)
+++++. +.++. ....+++|+.|++.+++
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 666532 33222 22345566666666653
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=8e-07 Score=82.43 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=20.9
Q ss_pred CCCccEEeecCCc--chhhhhcCCCCccEEEeCCCccee
Q 007138 71 LPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 71 ~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~ 107 (616)
|.+|+.+.++.|+ .+......-|.|+++.+.......
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccc
Confidence 4556666666665 233334445666776666555443
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.7e-05 Score=79.28 Aligned_cols=139 Identities=26% Similarity=0.438 Sum_probs=84.7
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+.+++.|++++| .++.+|. --++|++|.+++|..+..+|..... +|++|++++|..+... |
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~--nLe~L~Ls~Cs~L~sL-P---------- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPE--GLEKLTVCHCPEISGL-P---------- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhh--hhhheEccCccccccc-c----------
Confidence 34567778888877 4666662 1235778888777777666654333 7888888877655321 1
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
+.|+.|++.++ ....++. .+++|+.|.+.+++.....+...
T Consensus 112 ---------------------------~sLe~L~L~~n--~~~~L~~----------LPssLk~L~I~~~n~~~~~~lp~ 152 (426)
T PRK15386 112 ---------------------------ESVRSLEIKGS--ATDSIKN----------VPNGLTSLSINSYNPENQARIDN 152 (426)
T ss_pred ---------------------------cccceEEeCCC--CCccccc----------CcchHhheecccccccccccccc
Confidence 34677777543 2223322 46678888886533221111000
Q ss_pred ccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCC
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCC 582 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 582 (616)
.--++|++|.+.+|..+. +| ..++.+|+.|.++.+
T Consensus 153 ~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 153 LISPSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred ccCCcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 112689999999988653 44 346789999999865
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=6.5e-07 Score=85.02 Aligned_cols=189 Identities=17% Similarity=0.131 Sum_probs=85.7
Q ss_pred CcccEEEecCCCCchhhh----hhccCCCCccEEEcccccccccc-------------cccccCCCCCcEEEeccCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLDNNTSLETISIERCGNLKIL-------------PSGLHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~-------------~~~l~~l~~L~~L~l~~~~~~~ 427 (616)
|.|++++|++|-+-...+ ..+.++.+|++|.+.+|..-..- ..-...-++|+.+....|. +.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-le 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cc
Confidence 477777777765433222 22445667777777776532211 0112234566666665552 22
Q ss_pred ccCCC-----CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 428 SFPEG-----GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 428 ~~~~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
..+.. ...++.|+.+.+.+...-..........+..+++|+.||+.+|.....+...-...+..+++|++|.+.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 22211 1122456666665521111111111124556666666666666533333333333455556666666666
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccccc-----cccccccCccccEEEecC
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~~~~~~L~~L~l~~ 558 (616)
|.-.-.........+.. ..|+|++|.+.+| .++. +...+...|.|+.|++.+
T Consensus 251 cll~~~Ga~a~~~al~~---~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKE---SAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred cccccccHHHHHHHHhc---cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 42111111110000000 2456666666663 3332 111344456666666666
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=5.3e-06 Score=78.99 Aligned_cols=195 Identities=17% Similarity=0.111 Sum_probs=131.3
Q ss_pred hhhccCCCCccEEEcccccccccccc----cccCCCCCcEEEeccCCCCcccC--------------CCCCCCCCceEEE
Q 007138 382 AERLDNNTSLETISIERCGNLKILPS----GLHNLRQLQGIKIWNCGNLVSFP--------------EGGLPCAKLRRLD 443 (616)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~--------------~~~~~~~~L~~L~ 443 (616)
...+..++.|+.|++++|-.-...+. .+.++..|++|++.+| .+.... .....-+.|+++.
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 34566678999999999865433333 3467899999999998 443211 1112235899999
Q ss_pred ccCCcccccchhh-hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 444 ISDCKRLEGGFHR-YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 444 l~~c~~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
... +++.+..-. .-..+...+.|+.+.+..|.+...+......++.++++|++|++.+|....+. ...+...+.
T Consensus 164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~ 238 (382)
T KOG1909|consen 164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALS 238 (382)
T ss_pred eec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhc
Confidence 988 677554333 33367777899999999887655555555567899999999999997322221 112344556
Q ss_pred CCCccceEecccCccccccc-----c-ccccCccccEEEecCCCCCcc-----cCCC-CCcCCcceEEEcCCch
Q 007138 523 LPASLTTLWISRFPNLERLS-----S-SIVDLQNLTELVLVNCPKLKY-----FPEK-GLPSSLLQLQIYCCPL 584 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~-----~-~~~~~~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~i~~c~~ 584 (616)
.+++|++|.+++|. ++.-. . .-...|.|+.+.+.+ +.++. +... .-.|.|+.|++++|..
T Consensus 239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78899999999986 44321 1 234589999999999 55544 1111 1257899999998863
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.90 E-value=3.7e-07 Score=91.97 Aligned_cols=181 Identities=22% Similarity=0.257 Sum_probs=115.3
Q ss_pred chhhhhhccC--CCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchh
Q 007138 378 LESIAERLDN--NTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 378 ~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
++.+|..... +..-...+++.|. ...+|.....|..|+.+.++.| .+..+|........|.+++++. +.+....+
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~ 138 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPD 138 (722)
T ss_pred hhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCCh
Confidence 3444443332 3344556777755 6678988999999999999987 5678888777777899999988 55644322
Q ss_pred hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccC
Q 007138 456 RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRF 535 (616)
Q Consensus 456 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c 535 (616)
.+ ..| -|+.|-+++|+.. ..++.+..++.|.+|+.+.| .+..++...+ .+.+|+.|.+..
T Consensus 139 -~l---C~l-pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~n--ei~slpsql~-------~l~slr~l~vrR- 198 (722)
T KOG0532|consen 139 -GL---CDL-PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKN--EIQSLPSQLG-------YLTSLRDLNVRR- 198 (722)
T ss_pred -hh---hcC-cceeEEEecCccc-----cCCcccccchhHHHhhhhhh--hhhhchHHhh-------hHHHHHHHHHhh-
Confidence 11 111 3555555655422 22334455666777777765 5556655543 466777777777
Q ss_pred ccccccccccccCccccEEEecCCCCCcccCCCC-CcCCcceEEEcCCc
Q 007138 536 PNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG-LPSSLLQLQIYCCP 583 (616)
Q Consensus 536 ~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~ 583 (616)
+++..+|..+. .-.|.+|+++ ||++..||... .+..|++|-+.++|
T Consensus 199 n~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 199 NHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhCCHHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 56667776555 3356677776 47777777753 36777777777766
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.88 E-value=1e-05 Score=83.79 Aligned_cols=34 Identities=35% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
.+++++.|++++ +.+..++. +..+.+|+.+++++
T Consensus 253 ~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred cccccceecccc-cccccccc-ccccCccCEEeccC
Confidence 355566666665 44555553 55566666666665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=2.2e-05 Score=56.83 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=26.4
Q ss_pred CccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 494 SLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 494 ~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+|++|++++| .+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS--TESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC--CCCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 4455555553 444444322 22445555555554 33444443 344555555555554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.9e-05 Score=57.10 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=50.3
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
|+|++|++++| .++.+|. .+..+++|++|++++ +.++.++...+ +++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999995 7999986 778999999999997 89999998654 7899999999875
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.78 E-value=6.7e-06 Score=87.86 Aligned_cols=111 Identities=27% Similarity=0.457 Sum_probs=57.4
Q ss_pred CCCcEEEccCCCCCcc--cccccCCCCCccEEEEcCC-CCCCCCC-----CCCCCCCCcEEEccCCCCccccchhhccCC
Q 007138 202 CRLEYLRLSNCEGLVK--LPQSSLSLSSLREIEICKC-SSLVSFP-----EVALPSKLKNIWISTCDALKSLPEAWMCDT 273 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 273 (616)
+.|+.|.+.+|..++. +-.....+++|+.|++++| ......+ ....+++|+.+++..+..+.+.........
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5666666666655443 3334455666666666552 2222211 112256666666666665555444333344
Q ss_pred CCCccEEEeccCCCCcccccc---CCCCCccEEEEecCCCCC
Q 007138 274 NSSLEILSIHGCRSLTYIAAV---QLPPSLKQLSISDCDNIR 312 (616)
Q Consensus 274 ~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~ 312 (616)
+++|++|.+.+|..+++.... ..++.|+.|++++|..++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 566666666656543332221 344566666666666554
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.76 E-value=5.2e-06 Score=88.71 Aligned_cols=121 Identities=24% Similarity=0.344 Sum_probs=71.7
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCC-CCCcccc----cccCCCCCccEEEEcC
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNC-EGLVKLP----QSSLSLSSLREIEICK 235 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~ 235 (616)
.......++.|+.|.+.+|..+.... +..+...+++|+.|+++++ ......+ .....+++|+.|+++.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 33444557777777777776666521 2333344477778877763 2222221 2234467777777777
Q ss_pred CCCCCCCC--CCC-CCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCC
Q 007138 236 CSSLVSFP--EVA-LPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSL 288 (616)
Q Consensus 236 ~~~l~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 288 (616)
+..+++.. .+. .+++|+.|.+.+|..+++.........++.|++|++++|..+
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 75555443 222 267788888777776555544444455677888888877665
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.70 E-value=7.4e-05 Score=81.46 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred ccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
++.|+++++...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.....+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666677777777777665556666666777777777776644445665555556677777766
Q ss_pred Ccccccchhhh
Q 007138 447 CKRLEGGFHRY 457 (616)
Q Consensus 447 c~~l~~~~~~~ 457 (616)
+.+++.+|..
T Consensus 500 -N~l~g~iP~~ 509 (623)
T PLN03150 500 -NSLSGRVPAA 509 (623)
T ss_pred -CcccccCChH
Confidence 4566666543
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.63 E-value=6.7e-05 Score=77.77 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=58.0
Q ss_pred cCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCCc
Q 007138 492 FSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLP 571 (616)
Q Consensus 492 l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 571 (616)
..+|++|.+++| ..+....... .+..+..+.+.+ +.+..++..+..++++++|++.+ +.+.+++..+..
T Consensus 208 ~~~L~~l~~~~N-~~~~~~~~~~--------~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~ 276 (394)
T COG4886 208 LSALEELDLSNN-SIIELLSSLS--------NLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSL 276 (394)
T ss_pred hhhhhhhhhcCC-cceecchhhh--------hcccccccccCC-ceeeeccchhccccccceecccc-cccccccccccc
Confidence 345888888874 2222222222 466777777666 55666666788899999999998 899999886667
Q ss_pred CCcceEEEcCCc
Q 007138 572 SSLLQLQIYCCP 583 (616)
Q Consensus 572 ~~L~~L~i~~c~ 583 (616)
.+++.+++++..
T Consensus 277 ~~l~~L~~s~n~ 288 (394)
T COG4886 277 TNLRELDLSGNS 288 (394)
T ss_pred CccCEEeccCcc
Confidence 899999998854
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=7.7e-05 Score=69.61 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=60.5
Q ss_pred hHHhhhhhccCCCcEEEccCCCCCc--ccccccCCCCCccEEEEcCCCCCCCCCCC-CCCCCCcEEEccCCCCccccchh
Q 007138 192 DQQQQLCELSCRLEYLRLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEV-ALPSKLKNIWISTCDALKSLPEA 268 (616)
Q Consensus 192 ~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~ 268 (616)
+++..++..++.++.+|+.+|.... ++...+.+++.|+.|+++.|+--..+... ....+|++|.+.+.. +.--...
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~ 139 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQST 139 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhh
Confidence 4456666667889999999987633 55556778999999999988654455444 357788888887754 3221111
Q ss_pred hccCCCCCccEEEeccC
Q 007138 269 WMCDTNSSLEILSIHGC 285 (616)
Q Consensus 269 ~~~~~~~~L~~L~l~~~ 285 (616)
.....+|.+++++++.+
T Consensus 140 s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhcchhhhhhhhccc
Confidence 11234466777777654
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=9.6e-05 Score=80.46 Aligned_cols=160 Identities=23% Similarity=0.284 Sum_probs=91.2
Q ss_pred cceeecccccccccccccCCC----------cccccCCCcceEeeccCCCcccccC----CCCCCccEEeecCCc----c
Q 007138 23 LETLRFENMQEWEDWIPLRSG----------QGVEWFPKLRELHIISCSKLQGTFP----EHLPALEMLVIEGCE----E 84 (616)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~----------~~~~~~~~L~~L~l~~c~~l~~~~p----~~~~~L~~L~l~~c~----~ 84 (616)
|++|.+.++...+.+.-.... -....-.+|++|+|++-..+....| ..+|.|+.|.+++-. .
T Consensus 85 L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d 164 (699)
T KOG3665|consen 85 LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD 164 (699)
T ss_pred ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh
Confidence 777777777655444332100 0003467888888887543332222 357888888888754 3
Q ss_pred hhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhH
Q 007138 85 LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNEL 164 (616)
Q Consensus 85 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (616)
.......+|+|..||+++++.....+. +.+.+|+.|.+.++..... .....
T Consensus 165 F~~lc~sFpNL~sLDIS~TnI~nl~GI--------------------------S~LknLq~L~mrnLe~e~~---~~l~~ 215 (699)
T KOG3665|consen 165 FSQLCASFPNLRSLDISGTNISNLSGI--------------------------SRLKNLQVLSMRNLEFESY---QDLID 215 (699)
T ss_pred HHHHhhccCccceeecCCCCccCcHHH--------------------------hccccHHHHhccCCCCCch---hhHHH
Confidence 334556788899999998887665333 3445555555555444332 33334
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG 214 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 214 (616)
+..+++|+.||+|.-.....- ......-......++||.||.++...
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDT---KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCCCeeeccccccccch---HHHHHHHHhcccCccccEEecCCcch
Confidence 567888888888875433321 01011111122236778888777543
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00019 Score=47.52 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
++|++|++++|.. +++|..++++++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3678888888765 677777788888888888887 4665543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.00021 Score=47.35 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=29.9
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|++|++++ +.++.+|..+..+++|++|++++ +.+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 4678888888 56888886688888888888888 56777654
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.27 E-value=0.00083 Score=73.37 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.++.|+|++|.....+|..++.+++|+.|++++|.....+| .+..+++|+.|++++|.....+|..+ ..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEE
Confidence 37788888887766788888888888888888885445666 45668888888888887555666654 5668888888
Q ss_pred eccCCCCcccccc--CCCCCccEEEEecCCCCC
Q 007138 282 IHGCRSLTYIAAV--QLPPSLKQLSISDCDNIR 312 (616)
Q Consensus 282 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~ 312 (616)
++++..-..++.. ....++..+++.++..+.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 8876533333322 122345567777665443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00015 Score=67.68 Aligned_cols=190 Identities=16% Similarity=0.152 Sum_probs=101.8
Q ss_pred CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc-ccccc
Q 007138 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL-KILPS 407 (616)
Q Consensus 329 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~ 407 (616)
+.++++++.+ +.+.+ ...+...++.+ |.|+.|+++.|+....+........+|+.|-+.+...- +....
T Consensus 71 ~~v~elDL~~-N~iSd---WseI~~ile~l------P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 71 TDVKELDLTG-NLISD---WSEIGAILEQL------PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred hhhhhhhccc-chhcc---HHHHHHHHhcC------ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 4466666665 33332 11122334444 77888888877554433322245568888888775421 23334
Q ss_pred cccCCCCCcEEEeccCCCCcccCCC----CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhh
Q 007138 408 GLHNLRQLQGIKIWNCGNLVSFPEG----GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMI 483 (616)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 483 (616)
.+..+|.+++|+++.|. +..+-.. ..-.+.+++++...|.... +..-|.
T Consensus 141 ~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------------------w~~~~~------- 193 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------------------WLNKNK------- 193 (418)
T ss_pred hhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHH-------------------HHHHHh-------
Confidence 55677888888888762 1111000 0001134445444443221 111121
Q ss_pred hcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCC
Q 007138 484 ERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPK 561 (616)
Q Consensus 484 ~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~ 561 (616)
--.-+|++..+.+..| .++....+.+ +-.+|++--|.+.. +++.++.+ .+..|+.|..|++.+.|-
T Consensus 194 ----l~r~Fpnv~sv~v~e~--PlK~~s~ek~-----se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 194 ----LSRIFPNVNSVFVCEG--PLKTESSEKG-----SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ----HHhhcccchheeeecC--cccchhhccc-----CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcc
Confidence 1134678888888775 3444333321 12456666677776 56666654 677888888888888666
Q ss_pred CcccCC
Q 007138 562 LKYFPE 567 (616)
Q Consensus 562 l~~l~~ 567 (616)
...+..
T Consensus 262 ~d~l~~ 267 (418)
T KOG2982|consen 262 SDPLRG 267 (418)
T ss_pred cccccC
Confidence 555544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00023 Score=77.57 Aligned_cols=108 Identities=20% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+|++|++.+-.... ...+......+|+|++|.+++-.-.. .++.++-..+++|..||+++++. +.+ .
T Consensus 122 ~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~TnI-~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGTNI-SNL-S 189 (699)
T ss_pred HhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecc--------hhHHHHhhccCccceeecCCCCc-cCc-H
Confidence 466666665533322 12333444556777777776632111 12333334447777777777443 444 4
Q ss_pred ccCCCCCccEEEEcCCCCCC--CCCCCCCCCCCcEEEccCCC
Q 007138 221 SSLSLSSLREIEICKCSSLV--SFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~L~~L~l~~~~ 260 (616)
+++.+++|+.|.+++-.... ++-.+..+.+|+.||+++-.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 56667777777766643221 12244556777777776544
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.00016 Score=75.22 Aligned_cols=103 Identities=24% Similarity=0.303 Sum_probs=57.2
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.+++.|++.++.. ..+...+..+++|+.|++++|. ++.+ .++..++.|+.|++.+| .+..+.... .++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~~~-~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLSGN-LISDISGLE-SLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccch-hhcccchhhhhcchheeccccc-cccc-cchhhccchhhheeccC-cchhccCCc-cchhhhcccC
Confidence 5566666666532 2233224556677777777755 3333 24556666777777776 344443322 1346777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCCh
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM 476 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 476 (616)
++ +.++..-+. . ...+.+++.+++++|.
T Consensus 170 ~~-n~i~~ie~~--~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SY-NRIVDIEND--E-LSELISLEELDLGGNS 197 (414)
T ss_pred Cc-chhhhhhhh--h-hhhccchHHHhccCCc
Confidence 77 344333211 0 3566677777777765
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.07 E-value=7.8e-05 Score=77.50 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=100.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..++.+.+..+...+ +-..+..+++|+.|++.+|. +..+...+..+++|++|++++| .++.+... ..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l-~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEGL-STLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccch-hhccchhhhee
Confidence 445555555442222 22235566778888887755 4444333667778888888776 44444322 22225777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc--ccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG--FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++ +.++.. ..+..++.|+.+++++|.... .+. ...+.+++.+++.+| .+..+....
T Consensus 148 ~~-N~i~~~-----~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n--~i~~i~~~~-------- 205 (414)
T KOG0531|consen 148 SG-NLISDI-----SGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGN--SIREIEGLD-------- 205 (414)
T ss_pred cc-Ccchhc-----cCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCC--chhcccchH--------
Confidence 77 445332 234446777777777775322 112 356677777777775 333333322
Q ss_pred CCCccceEecccCccccccccccccCcc--ccEEEecCCCCCcccC-CCCCcCCcceEEEcC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQN--LTELVLVNCPKLKYFP-EKGLPSSLLQLQIYC 581 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~--L~~L~l~~c~~l~~l~-~~~~~~~L~~L~i~~ 581 (616)
....+..+++.. +.+..+. .+..... |+.+++.+ +.+..++ .......+..+++.+
T Consensus 206 ~~~~l~~~~l~~-n~i~~~~-~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 206 LLKKLVLLSLLD-NKISKLE-GLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHHhhccc-ccceecc-CcccchhHHHHHHhccc-Cccccccccccccccccccchhh
Confidence 233333344444 3344333 2223333 77888887 6666653 223345555555554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=2.4e-05 Score=81.49 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCCcEEEccCCCCCcccccc-cCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQS-SLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC 259 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 259 (616)
++|++||+++|.. ..+|.. ...++ |+.|.+++| .++.+-.+.++.+|+.|++++|
T Consensus 209 ~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ccccccccccchh-ccccccchhhhh-heeeeeccc-HHHhhhhHHhhhhhhccchhHh
Confidence 5566666666543 444431 12233 555555554 3444444455555555555554
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.77 E-value=0.00022 Score=74.50 Aligned_cols=107 Identities=26% Similarity=0.224 Sum_probs=77.7
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
++.-++.|+.|+|+.|.... ...+..+++|++|||++| .+..+|.... .-..|+.|.+++ +.++
T Consensus 182 SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN--~L~~vp~l~~-------~gc~L~~L~lrn-N~l~ 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYN--CLRHVPQLSM-------VGCKLQLLNLRN-NALT 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccc--hhccccccch-------hhhhheeeeecc-cHHH
Confidence 56777889999999887332 225678899999999987 4555544331 123489999998 6788
Q ss_pred ccccccccCccccEEEecCCCCCcccCC---CCCcCCcceEEEcCCch
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPE---KGLPSSLLQLQIYCCPL 584 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~ 584 (616)
++- ++.++.+|+-|++++ |-+....+ .+.+..|.+|++.|+|.
T Consensus 246 tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 776 778899999999998 66655443 34467889999999873
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.13 E-value=0.0096 Score=52.92 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCCcEEEccCCCCCccccc--ccCCCCCccEEEEcCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQ--SSLSLSSLREIEICKC 236 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 236 (616)
++|+.|.+.+|.. .++.+ .+..+++|++|.+-+|
T Consensus 88 p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 88 PNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cccceEEecCcch-hhhhhcchhccCCccceeeecCC
Confidence 4455555555443 22111 1334555555555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.76 E-value=0.02 Score=51.02 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=59.9
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCCCccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l 565 (616)
.+.+++.|.+|.+.+| .+..+..... ..++.|++|.+.+ +.+..+.. .+..||+|+.|.+-+ +.+...
T Consensus 59 ~lp~l~rL~tLll~nN--rIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k 128 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN--RITRIDPDLD------TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG-NPVEHK 128 (233)
T ss_pred cCCCccccceEEecCC--cceeeccchh------hhccccceEEecC-cchhhhhhcchhccCCccceeeecC-Cchhcc
Confidence 5677788888888876 6776665542 3577888888888 56766654 466788888888888 555554
Q ss_pred CCC-----CCcCCcceEEEcCCc
Q 007138 566 PEK-----GLPSSLLQLQIYCCP 583 (616)
Q Consensus 566 ~~~-----~~~~~L~~L~i~~c~ 583 (616)
... ..+|+|+.|++.+-.
T Consensus 129 ~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecCcceEeehhhhh
Confidence 442 126888888887654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.50 E-value=0.0091 Score=55.36 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=40.6
Q ss_pred ccCCCcceEeeccCCCcc-cccCCCCCCccEEeecCCc-----chhhhhcCCCCccEEEeCCCccee
Q 007138 47 EWFPKLRELHIISCSKLQ-GTFPEHLPALEMLVIEGCE-----ELLVSVASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l~-~~~p~~~~~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~~~~~~ 107 (616)
..|.+|+.|++.++.-.+ ..+| .+|+|+.|.++.+. .+......+|+|++|++++|.+..
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 458888888888875222 1233 37888888888774 333444556888888888887654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00044 Score=64.08 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=54.5
Q ss_pred ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC--
Q 007138 491 RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-- 568 (616)
Q Consensus 491 ~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-- 568 (616)
.+.+.++|+..|| .+..+.... .++.|++|.++- ++|+++. .+..|++|++|+++. |.+.++.+.
T Consensus 17 dl~~vkKLNcwg~--~L~DIsic~--------kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGC--GLDDISICE--------KMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRK-NCIESLDELEY 83 (388)
T ss_pred HHHHhhhhcccCC--CccHHHHHH--------hcccceeEEeec-cccccch-hHHHHHHHHHHHHHh-cccccHHHHHH
Confidence 3556677777776 555555544 577788888876 5677765 466778888888877 677766652
Q ss_pred -CCcCCcceEEEcCCc
Q 007138 569 -GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 -~~~~~L~~L~i~~c~ 583 (616)
..+|+|.+|++.++|
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 236777777777665
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0061 Score=54.16 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=58.1
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC--CCCCCCCCceEEEccCCcccccchhhhHhhhccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP--EGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTN 466 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 466 (616)
..++.++-+++....+-..-+..++.++.|.+.+|..+.... ......++|+.|+++.|+++|+. .++.+.++++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~---GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG---GLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh---HHHHHHHhhh
Confidence 356777777766555444456677888888888887665321 11123459999999999999885 4556677777
Q ss_pred ceeeecCCCh
Q 007138 467 LHSLYIGGNM 476 (616)
Q Consensus 467 L~~L~l~~~~ 476 (616)
|+.|.+.+..
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 7777776543
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.009 Score=53.13 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=49.4
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc-cccccCccccEEEecCCCCCccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
.+..++.++.|.+.+| ..+.....+. .....++|+.|++++|+.|++-. .++.++++|+.|.+.+.+.+...
T Consensus 120 ~L~~l~~i~~l~l~~c-k~~dD~~L~~-----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANC-KYFDDWCLER-----LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHhccchhhhheeccc-cchhhHHHHH-----hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 4466677777777773 3333322221 11257899999999999998754 37889999999999886665553
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.0058 Score=56.92 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=18.7
Q ss_pred CccEEeecCCcchh-hhhcCCCCccEEEeCCCcceeec
Q 007138 73 ALEMLVIEGCEELL-VSVASLPALCKFEIGGCKKVVWR 109 (616)
Q Consensus 73 ~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~~~~~~ 109 (616)
+.++|+..+|..-. +...+++.|+.|.|+-|.+.+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~ 57 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA 57 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch
Confidence 34445555554221 33445666666666666555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.24 E-value=0.015 Score=53.93 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCcEEEccCC--CCCcccccccCCCCCccEEEEcCCCCCC---CCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNC--EGLVKLPQSSLSLSSLREIEICKCSSLV---SFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|+.|.++.| .....++....++++|++|++++|. ++ .++....+.+|..|++..|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 55666666665 3323344334445666666666652 33 22233345555555555554
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.10 E-value=0.012 Score=48.82 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=47.7
Q ss_pred ceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc-ccccCCccEEEEecCCCcccccccccccc
Q 007138 439 LRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG-FHRFSSLRHLTIRGCDDDMVSFPLEDKRL 517 (616)
Q Consensus 439 L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~i~~~~~~l~~l~~~~~~~ 517 (616)
+..+++++|+-. -+++.+..+.+...|...+|++|.... .+.. ...++-.+.|++++| .+..+|.+..
T Consensus 29 ~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~n--eisdvPeE~A-- 97 (177)
T KOG4579|consen 29 LHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANN--EISDVPEELA-- 97 (177)
T ss_pred hhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchh--hhhhchHHHh--
Confidence 455666666422 123333344444455555555553110 0000 122334444555543 4455555432
Q ss_pred CCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 518 GTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 518 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+++|+.|+++.+ .+...|..+..+.+|-.|+..+ +....++-
T Consensus 98 -----am~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 98 -----AMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred -----hhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 4555555555552 2333443333344555555444 44444443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.80 E-value=0.034 Score=51.77 Aligned_cols=188 Identities=16% Similarity=0.042 Sum_probs=98.7
Q ss_pred CcccEEEecCCCCc---hhh-------hhhccCCCCccEEEcccccccccccc----cccCCCCCcEEEeccCCCCcccC
Q 007138 365 PSLKSLYVYGCSKL---ESI-------AERLDNNTSLETISIERCGNLKILPS----GLHNLRQLQGIKIWNCGNLVSFP 430 (616)
Q Consensus 365 ~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~ 430 (616)
.+|+..++++...- +.+ ...+..||.|+.+++++|..-...|. .+.+-+.|++|.+.+| .+.-+.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 56666666653211 122 23567788999999998876555544 3467788999999887 444321
Q ss_pred C--------------CCCCCCCceEEEccCCcccccch-hhhHhhhcccccceeeecCCChHHHHHh-hhcCccccccCC
Q 007138 431 E--------------GGLPCAKLRRLDISDCKRLEGGF-HRYMIALHNLTNLHSLYIGGNMEIWKSM-IERGRGFHRFSS 494 (616)
Q Consensus 431 ~--------------~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~ 494 (616)
. .+..-|.|+++.... +++.... ..+-..+..-..|+.+.+..|.+.-.+. .....++..+.+
T Consensus 137 G~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~ 215 (388)
T COG5238 137 GGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS 215 (388)
T ss_pred hhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence 1 011234788887776 4554332 2222334333577777776664332211 111224455677
Q ss_pred ccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc------ccccCccccEEEecC
Q 007138 495 LRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS------SIVDLQNLTELVLVN 558 (616)
Q Consensus 495 L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~------~~~~~~~L~~L~l~~ 558 (616)
|+.|+|.+|..... ... .++.+....+.|++|.+.+|---..-.. .-..+|+|..|...+
T Consensus 216 LevLDlqDNtft~~--gS~--~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 216 LEVLDLQDNTFTLE--GSR--YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred ceeeeccccchhhh--hHH--HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 77778777522111 110 1122223345577777777642211111 112356666666666
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.55 E-value=0.067 Score=49.94 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=117.8
Q ss_pred CcccEEEecCCCCchhhhh----hccCCCCccEEEccccccccc----cccc---------ccCCCCCcEEEeccCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIAE----RLDNNTSLETISIERCGNLKI----LPSG---------LHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~----~~~~---------l~~l~~L~~L~l~~~~~~~ 427 (616)
|.++..++++|.+-..+|. .+.+-+.|.+|.+++|..-.. +..+ ...=|.|+.+....|+ +.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-le 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hc
Confidence 8999999999977655554 356678999999998853322 1111 1245788888888763 33
Q ss_pred ccCCC----CCCC-CCceEEEccCCcccccchhhhH-----hhhcccccceeeecCCChHHHHHhhhcCccccccCCccE
Q 007138 428 SFPEG----GLPC-AKLRRLDISDCKRLEGGFHRYM-----IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497 (616)
Q Consensus 428 ~~~~~----~~~~-~~L~~L~l~~c~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 497 (616)
..+.. .+.. .+|+.+.+.+ +. +-|..+ ..+..+++|+.||+.+|-....+...-...+...+.|++
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~q-Ng---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQ-NG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeee-cC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 33321 1111 3788888887 33 334433 356789999999999997444333333345566788999
Q ss_pred EEEecCCCccccccccccccCCCCCCCCccceEecccCccccc------ccc-ccccCccccEEEecCCCCCcccCC
Q 007138 498 LTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER------LSS-SIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 498 L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------i~~-~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
|.+.+|.-.-.....-...... ...|+|..|...++..-.. ++. .-..+|-|..+.+.+ |++.....
T Consensus 247 L~lnDClls~~G~~~v~~~f~e--~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~~d 320 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNE--KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKELAD 320 (388)
T ss_pred ccccchhhccccHHHHHHHhhh--hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhHHH
Confidence 9999973222211111100001 1468888888877332111 121 234577888888887 66666443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.44 E-value=0.072 Score=29.10 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=12.2
Q ss_pred CCcEEEccCCCCCcccccccCC
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLS 224 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~ 224 (616)
+|++|++++|.. +.+|.++++
T Consensus 1 ~L~~Ldls~n~l-~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNL-TSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEE-SEEGTTTTT
T ss_pred CccEEECCCCcC-EeCChhhcC
Confidence 356677777643 466665443
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.82 E-value=0.024 Score=47.16 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
.+....+|+..+++++. ++++|+. +...++-++.|++++|.. .++|..+..++.|+.|+++.|+......
T Consensus 48 ~l~~~~el~~i~ls~N~-fk~fp~k--------ft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG-FKKFPKK--------FTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred HHhCCceEEEEecccch-hhhCCHH--------Hhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchH
Confidence 34556677777887743 5555443 233446788888888765 7888888888999999998886433322
Q ss_pred CCCCCCCCcEEEccCCCCccccch
Q 007138 244 EVALPSKLKNIWISTCDALKSLPE 267 (616)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~l~~~~~ 267 (616)
.+..+.++-.|+..++. ...++.
T Consensus 118 vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHHHHhHHHhcCCCCc-cccCcH
Confidence 44447777777777665 334443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.71 E-value=0.2 Score=25.37 Aligned_cols=9 Identities=56% Similarity=0.571 Sum_probs=3.8
Q ss_pred cccEEEecC
Q 007138 550 NLTELVLVN 558 (616)
Q Consensus 550 ~L~~L~l~~ 558 (616)
+|+.|++++
T Consensus 2 ~L~~L~l~~ 10 (17)
T PF13504_consen 2 NLRTLDLSN 10 (17)
T ss_dssp T-SEEEETS
T ss_pred ccCEEECCC
Confidence 344444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.68 E-value=0.15 Score=27.80 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=8.3
Q ss_pred cceEecccCcccccccc
Q 007138 527 LTTLWISRFPNLERLSS 543 (616)
Q Consensus 527 L~~L~l~~c~~l~~i~~ 543 (616)
|++|++++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 455555554 4445554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.83 E-value=2.8 Score=35.10 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred cCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEcc
Q 007138 386 DNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDIS 445 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 445 (616)
..+++|+.+.+.+ .++.++. .+..+++|+.+.+.+. +..++...+ .+++++.+.+.
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 3344555555542 2333322 3445555555555442 344443332 23345555553
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.60 E-value=3.9 Score=34.18 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=31.2
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+++|+.+++.+ .+..++... +..+++|+.+.+.+ .+..++. .+..+++|+.+.+.. ++..++
T Consensus 30 ~F~~~~~l~~i~~~~---~~~~i~~~~------F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~ 96 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN---NLTSIGDNA------FSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIG 96 (129)
T ss_dssp TTTT-TT-SEEEESS---TTSCE-TTT------TTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEH
T ss_pred hcccccccccccccc---cccccceee------eecccccccccccc--cccccccccccccccccccccCc--cccEEc
Confidence 445555566666644 244443322 22344566666643 3444433 344466666666643 244444
Q ss_pred CCCC-cCCcceEEEc
Q 007138 567 EKGL-PSSLLQLQIY 580 (616)
Q Consensus 567 ~~~~-~~~L~~L~i~ 580 (616)
.... -..|+.+.+.
T Consensus 97 ~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 97 SSSFSNCNLKEINIP 111 (129)
T ss_dssp TTTTTT-T--EEE-T
T ss_pred hhhhcCCCceEEEEC
Confidence 4322 0144444443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.54 E-value=0.88 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=15.0
Q ss_pred CCCceEEEccCCcccccc
Q 007138 436 CAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~ 453 (616)
|++|+.|++++|.++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 458999999999988774
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=70.23 E-value=3.4 Score=23.37 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=13.8
Q ss_pred CccccEEEecCCCCCcccCCC
Q 007138 548 LQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 548 ~~~L~~L~l~~c~~l~~l~~~ 568 (616)
+++|++|++.+ |+++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 677777653
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=70.23 E-value=3.4 Score=23.37 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=13.8
Q ss_pred CccccEEEecCCCCCcccCCC
Q 007138 548 LQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 548 ~~~L~~L~l~~c~~l~~l~~~ 568 (616)
+++|++|++.+ |+++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 677777653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=57.22 E-value=7 Score=22.31 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=13.1
Q ss_pred ccccEEEecCCCCCcccCC
Q 007138 549 QNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~ 567 (616)
+.|+.|++++ |+++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4677777777 77777776
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.71 E-value=12 Score=39.22 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=7.4
Q ss_pred CCCcEEEccCCCCcc
Q 007138 249 SKLKNIWISTCDALK 263 (616)
Q Consensus 249 ~~L~~L~l~~~~~l~ 263 (616)
..|++|.+.+|+..+
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 345555555555433
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.18 E-value=16 Score=20.08 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=9.1
Q ss_pred CCCccEEEeCCCcce
Q 007138 92 LPALCKFEIGGCKKV 106 (616)
Q Consensus 92 ~~~L~~L~l~~~~~~ 106 (616)
+++|++|++++|.+.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 467888888888743
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.87 E-value=0.42 Score=50.16 Aligned_cols=194 Identities=22% Similarity=0.149 Sum_probs=0.0
Q ss_pred cccEEEecCCCCc----hhhhhhccCCCCccEEEccccccccc----ccccccCC-CCCcEEEeccCCCCc----ccCCC
Q 007138 366 SLKSLYVYGCSKL----ESIAERLDNNTSLETISIERCGNLKI----LPSGLHNL-RQLQGIKIWNCGNLV----SFPEG 432 (616)
Q Consensus 366 ~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~ 432 (616)
.+..+.+.+|... ..+...+...+.|+.|++++|..... +-.++... +.+++|++..|.... .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Q ss_pred CCCCCCceEEEccCCcccccchhhhHhhhcc----cccceeeecCCChHHHHHhhhcCccccccCC-ccEEEEecCCCcc
Q 007138 433 GLPCAKLRRLDISDCKRLEGGFHRYMIALHN----LTNLHSLYIGGNMEIWKSMIERGRGFHRFSS-LRHLTIRGCDDDM 507 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~i~~~~~~l 507 (616)
....+.++.++++.|.............+.. ..+++.|.+..+......+......+...+. +++|+++.| .+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n--~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN--KL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc--Cc
Q ss_pred ccccccccccCCCCCCC-CccceEecccCcccccccc----ccccCccccEEEecCCCCCcc
Q 007138 508 VSFPLEDKRLGTALPLP-ASLTTLWISRFPNLERLSS----SIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 508 ~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~i~~----~~~~~~~L~~L~l~~c~~l~~ 564 (616)
... ....+...+..+ +.+++++++.|+....-.. .+..++.++++.+.+ +.+.+
T Consensus 246 ~d~--g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~ 304 (478)
T KOG4308|consen 246 GDV--GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN-NPLTD 304 (478)
T ss_pred chH--HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc-Ccccc
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=38.37 E-value=27 Score=19.96 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=9.1
Q ss_pred ccccEEEecCCCCCcccC
Q 007138 549 QNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~ 566 (616)
++|+.|++++ |+++.+.
T Consensus 2 ~~L~~L~L~~-NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQ-NKIKKIE 18 (26)
T ss_pred CccCEEECCC-Cccceec
Confidence 4555566665 5555443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.21 E-value=33 Score=36.14 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=33.9
Q ss_pred CCCCccEEEEcCCCCCCCCC---CCC-CCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc
Q 007138 224 SLSSLREIEICKCSSLVSFP---EVA-LPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI 291 (616)
Q Consensus 224 ~l~~L~~L~l~~~~~l~~~~---~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 291 (616)
+.+.+..+++++| ++.++. .+. ..|+|+.|+|++|....+-...........|++|-+.+++..+++
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 4566667777776 344433 222 267777777777632211111111122345666666666544444
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.98 E-value=1.1e+02 Score=19.93 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=14.7
Q ss_pred ccccEEEecCCCCCcccCCCCCcCCcceEEEc
Q 007138 549 QNLTELVLVNCPKLKYFPEKGLPSSLLQLQIY 580 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~ 580 (616)
+++++|.+.+ .-=+.+....++++|++|.+.
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEee
Confidence 3455555533 222333344445566666554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.45 E-value=60 Score=18.70 Aligned_cols=13 Identities=38% Similarity=0.184 Sum_probs=8.8
Q ss_pred CCCcEEEccCCCC
Q 007138 202 CRLEYLRLSNCEG 214 (616)
Q Consensus 202 ~~L~~L~l~~~~~ 214 (616)
++|++|+|++|..
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4577777777655
Done!